BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040261
         (343 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/343 (55%), Positives = 246/343 (71%), Gaps = 1/343 (0%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F++++ M P+PP + SFN L G +AK K Y  V+SL+KR++ IGL PD  T NILIN
Sbjct: 77  FSVFNHLIDMQPTPP-ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILIN 135

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           C+C + +V  G  VLG +LR   +P+ VTFTSL+KGLC  SRI EA  L  K+   G +P
Sbjct: 136 CYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRP 195

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V TY TL+NGLC TG+T++A+ L EEM NGNG FGV  KP+ + Y TI D LCK+G +D
Sbjct: 196 NVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLID 255

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           K KELFL+MK   I+PDVV Y+S+I G C+   W  AK LF EM+D+GV PNVVTFNV++
Sbjct: 256 KGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLI 315

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK GKM+EA+ LL+LMIQ G  PD   YNTL+DGFCL GR++ A++LFVSMES G  
Sbjct: 316 DALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIE 375

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D  SY +LINGYCK+  +  A  LY EM+ K I PTV+TYNT
Sbjct: 376 TDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNT 418



 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 174/329 (52%), Gaps = 12/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   +     ++    LF  +   G+ P++ T+N+LI+  CK G++     +
Sbjct: 271 PDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHL 330

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++   +PD  T+ +LI G C E RI +A  LF  + + G + D  +Y  LING C+
Sbjct: 331 LKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCK 390

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           +G  + A  L+ EM         +CK   P  ITY+T+  GL +EG V  A  LF +MK 
Sbjct: 391 SGRMVEAKKLYREM---------MCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKV 441

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
            ++ P+  TY  L+ G C  N  +EA  LF  + +   QP++  FN +++ LCK  K++ 
Sbjct: 442 HDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEI 501

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  L   +   G+ P+   Y  ++ G C +G++  AK+LF+ ME  GC  ++ ++  L+ 
Sbjct: 502 ARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMR 561

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           G+C+N E++  + L  EM  K   P   T
Sbjct: 562 GFCQNDEMQKVVELLQEMAEKDFSPDAST 590



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 177/341 (51%), Gaps = 13/341 (3%)

Query: 7   MLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLF-----PDLYTYNILIN 60
           M+RM   P  V    +L G C+  N      L   + LN  G F     P+L  Y  +I+
Sbjct: 188 MVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLH-EEMLNGNGGFGVTIKPNLVCYCTIID 246

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G +  G  +   +     +PD V ++S+I G+C   R   A  LF ++   G  P
Sbjct: 247 SLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHP 306

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V T+  LI+ LC+ G    A +L + M    GE      PD  TY+T+ DG C EG +D
Sbjct: 307 NVVTFNVLIDALCKAGKMEEANHLLKLMIQ-RGE-----SPDTFTYNTLIDGFCLEGRID 360

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A++LF+ M+ + I  D V+Y  LI G+C +    EAK L+ EMM + + P V+T+N ++
Sbjct: 361 DARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLL 420

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             L + GK+ +A  L   M    + P++  YN L+DG C    ++ A ELF  +E++   
Sbjct: 421 TGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQ 480

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +  +  LI+G CK ++IE A  L++ +  +G+ P V+TY
Sbjct: 481 PSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITY 521



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 165/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +  +   L K+   D    LF  +   G+ PD+  Y+ +I+  C  GR      +
Sbjct: 236 PNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGL 295

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+ VTF  LI  LC   ++ EA  L   +   G  PD FTY TLI+G C 
Sbjct: 296 FNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCL 355

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +LF  M +   E       DA++Y+ + +G CK G + +AK+L+ +M  + I
Sbjct: 356 EGRIDDARDLFVSMESKGIE------TDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEI 409

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V+TY +L+ G        +A  LF EM    + P   T+N++++ LCKN  + EA  
Sbjct: 410 MPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAME 469

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +     +P   ++N L+DG C   ++  A+ELF  +   G   +V +Y ++I+G C
Sbjct: 470 LFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLC 529

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+ ++E A  L+  M  KG  P +VT+NT
Sbjct: 530 KSGQLENAKDLFLGMEEKGCAPNLVTFNT 558



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 158/319 (49%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN+L   L K    +    L K +   G  PD +TYN LI+ FC  GR+     +
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       DAV++  LI G C   R++EA  L+ ++      P V TY TL+ GL R
Sbjct: 366 FVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFR 425

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A NLF EM   +        P++ TY+ + DGLCK   + +A ELF  +++ + 
Sbjct: 426 EGKVRDAWNLFGEMKVHD------LTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDF 479

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +  +  LI G C A     A+ LF  +  +G++PNV+T+ V+++ LCK+G+++ A  
Sbjct: 480 QPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKD 539

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M + G  P+   +NTLM GFC    + +  EL   M       D  +  I+++   
Sbjct: 540 LFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLS 599

Query: 315 KNKEIEGALSLYSEMLSKG 333
           K+++    L L     ++G
Sbjct: 600 KDEKYREYLHLLPTFPAQG 618



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 6/169 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +++H   P  C++NIL   L KN H    + LF  L +    P +  +N LI+  CK  +
Sbjct: 439 MKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARK 498

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +  R+      P+ +T+T +I GLC   ++  A  LF  +   GC P++ T+ T
Sbjct: 499 IEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNT 558

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           L+ G C+       + L +EMA  +        PDA T S + D L K+
Sbjct: 559 LMRGFCQNDEMQKVVELLQEMAEKD------FSPDASTISIVVDLLSKD 601



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 8/191 (4%)

Query: 161 PDAITYSTITDGLCKEGFVDKAK--ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           PD           CK G + +++   +F  + D    P + ++ +L+        + +  
Sbjct: 53  PDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVI 112

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L+  M   G+ P+ +T N+++N  C   K+D    +L  M++ G  P+   + +L+ G 
Sbjct: 113 SLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGL 172

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG----- 333
           CL  R++ A  L   M   G   +V +YG L+NG C       A+ L+ EML+       
Sbjct: 173 CLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGV 232

Query: 334 -IRPTVVTYNT 343
            I+P +V Y T
Sbjct: 233 TIKPNLVCYCT 243



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F Y L  H   P +  FN L   L K +  +    LF RL+  GL P++ TY ++I+  
Sbjct: 470 LFHY-LENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGL 528

Query: 63  CKMGRVSPGF-VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           CK G++     + LG   + C  P+ VTF +L++G C    + +   L  ++      PD
Sbjct: 529 CKSGQLENAKDLFLGMEEKGC-APNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPD 587

Query: 122 VFTYTTLINGLCR 134
             T + +++ L +
Sbjct: 588 ASTISIVVDLLSK 600


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 178/343 (51%), Positives = 236/343 (68%), Gaps = 1/343 (0%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F  FD M+R HP PP + SFN L G LAK  HY  + SL+  +   GL PDL+T +IL N
Sbjct: 76  FHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILAN 134

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           C C + RVS     +  ILR  + P+ VT+T+LIKGLC E RI EA  LF +++  GC P
Sbjct: 135 CLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTP 194

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  TY TLI GLC+TG+  +AL L +EM N   ++GV CKP  ITYS I DGLCK G  D
Sbjct: 195 NAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRED 254

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AKELF +MK + + PDV++Y++LI GFC A  W+++K LF EM+DQGVQP++VTF+V++
Sbjct: 255 EAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLI 314

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK GK+ EA +LLE+MIQ G+ P+   YN+L+DGFC+ G +N A+ELF+SM S G  
Sbjct: 315 DTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLE 374

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D  SY  LINGYCK  +++ A++LY+EML  G  P V TY T
Sbjct: 375 PDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGT 417



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 172/326 (52%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++ L         +D    LF  +   G+ PD+ T+++LI+  CK G+V+    +
Sbjct: 270 PDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKL 329

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    P+ +T+ SLI G C    +  A  LF  + + G +PD  +YTTLING C+
Sbjct: 330 LEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCK 389

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A+NL+ EM        V   P+  TY T+  GL ++G V  AK+LF  MK   +
Sbjct: 390 TWKVKEAMNLYNEM------LQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGV 443

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + +   Y   + G C  +   EA  LF E+     + N+  ++ +++ LCK GK++ A  
Sbjct: 444 SANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWE 503

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E + Q G++PD   YN ++ GFC  G+V+ A  LF  ME NGC  D+ +Y  L+ G+C
Sbjct: 504 LFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFC 563

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           +  ++E  + L  +M+ K + P   +
Sbjct: 564 EGNKLEEVIKLLHKMVQKDVSPNAAS 589



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 178/334 (53%), Gaps = 12/334 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKR-LNSIGLF-----PDLYTYNILINCFCKMGRV 68
           P   ++  L   L +  + +  L L K  LN    +     P + TY+I+I+  CK+GR 
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +   +      PD +++++LI G C   +  ++  LF ++   G +PD+ T++ L
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL 313

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I+ LC+ G    A  L E M     + G+V  P+ ITY+++ DG C  G ++ A+ELFL 
Sbjct: 314 IDTLCKEGKVTEAKKLLEVMI----QRGIV--PNLITYNSLIDGFCMVGDLNSARELFLS 367

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M  + + PD ++YT+LI G+C      EA  L+ EM+  G  PNV T+  ++  L + GK
Sbjct: 368 MPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGK 427

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + +A +L  +M   GV  ++ +Y   +DG C    +  A ELF  ++S     ++ +Y  
Sbjct: 428 VGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSC 487

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           LI+G CK  ++E A  L+ ++  +G++P VVTYN
Sbjct: 488 LIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYN 521



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 127/277 (45%), Gaps = 41/277 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L          ++   LF  + S GL PD  +Y  LIN +CK  +V     +
Sbjct: 340 PNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNL 399

Query: 75  LGRILRSCFTPDAVTFTSLIKGL-----------------------------------CA 99
              +L+   +P+  T+ +L+KGL                                   C 
Sbjct: 400 YNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCK 459

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
              + EA  LF +L+++  K ++  Y+ LI+GLC+ G    A  LFE+++          
Sbjct: 460 NDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEG------L 513

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           +PD +TY+ +  G CK G VD A  LF KM++    PD++ Y +L+ GFC  N   E   
Sbjct: 514 QPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIK 573

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           L  +M+ + V PN  +  ++++ LCK+ K  +   LL
Sbjct: 574 LLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLL 610



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 244 CKNGKMD--EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           CK G +   +A    +LM++    P  S +N L+ G       ++   L+  M   G   
Sbjct: 65  CKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSP 124

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D+F+  IL N  C    +  AL+  + +L +G  P VVTY T
Sbjct: 125 DLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTT 166



 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 48/98 (48%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++NI+     K    D    LF+++   G  PD+  YN L+  FC+  ++     +
Sbjct: 515 PDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKL 574

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
           L ++++   +P+A + T ++  LC + +  +   L  K
Sbjct: 575 LHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPK 612


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 171/339 (50%), Positives = 233/339 (68%), Gaps = 1/339 (0%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ M+ M  +P  +  FN LFG LAK K Y  V+S+  R+NSIGL  +  + NIL+NC C
Sbjct: 95  FNQMIHMQTTPA-LSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLKNFISLNILLNCLC 153

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV  GFVV G ILR  + P+  TFT+L+KGLC E +I EA  +F  +  F C+P   
Sbjct: 154 SVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAI 213

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           T   LI+GLCRTG+T  AL L E M NGN +FG+ CKP  ++YS I D LCK+G V++AK
Sbjct: 214 TCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAK 273

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           E F++MK++ I P+VVTYTSL+ G C A++W EAK LFIEM+D G+ P+VVTF+V++  L
Sbjct: 274 EFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGAL 333

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EAS L +LM+Q  V P    YN L++G+CL G V+  K++F+SM +  C  D 
Sbjct: 334 CKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDA 393

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            SY IL+  YCK+ E+ GA+ LY EM+ +GI+PTV+TY+
Sbjct: 394 GSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYS 432



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 160/322 (49%), Gaps = 34/322 (10%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P + +Y+ +I+  CK G V         +      P+ VT+TSL+ GLC+ S   EA  L
Sbjct: 251 PTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRL 310

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F ++   G  PDV T++ LI  LC+ G    A  LF+ M     E      P   TY+ +
Sbjct: 311 FIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVE------PSTRTYNIL 364

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +G C  G VD+ K++FL M ++    D  +Y+ L++ +C  ++ + A  L+ EMMD+G+
Sbjct: 365 IEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGI 424

Query: 230 QPNVVTF----------------------------NVIMNELCKNGKMDEASRLLELMIQ 261
           QP V+T+                            NV ++ LCKNG + EA  +   +  
Sbjct: 425 QPTVITYSKVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLEN 484

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
                + +++N+L++G C + ++  A ELF  + +     DV +Y I+I G CK  + + 
Sbjct: 485 CKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQK 544

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A  L+ EM  KG  P VVT+NT
Sbjct: 545 AYDLFLEMEEKGCAPNVVTFNT 566



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 151/354 (42%), Gaps = 34/354 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++ +   L K+   +     F  +   G+FP++ TY  L++  C          +
Sbjct: 251 PTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRL 310

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD VTF+ LI  LC   ++ EA+ LF  +     +P   TY  LI G C 
Sbjct: 311 FIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCL 370

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       +F  M N        C+ DA +YS +    CK+  V  A  L+ +M D  I
Sbjct: 371 AGMVDEGKKIFLSMVNKR------CQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGI 424

Query: 195 NPDVVTYTSL----------------------------IRGFCYANDWNEAKCLFIEMMD 226
            P V+TY+ +                            + G C     +EA  +F  + +
Sbjct: 425 QPTVITYSKVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLEN 484

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
                NV  FN ++N +C++ K++ A  L   +    ++PD   Y  ++ G C  G+  +
Sbjct: 485 CKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQK 544

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           A +LF+ ME  GC  +V ++  L+ G C N E    + L  +M ++ + P   T
Sbjct: 545 AYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMAARKLSPDAST 598



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 138/296 (46%), Gaps = 38/296 (12%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V +F++L G L K         LF  +    + P   TYNILI  +C  G V  
Sbjct: 317 HGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDE 376

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL-- 128
           G  +   ++      DA +++ L+K  C +S +  A  L+ ++   G +P V TY+ +  
Sbjct: 377 GKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYSKVGD 436

Query: 129 --------------------------INGLCRTGHTIVALNLFEEMANGNGEFGVVCK-- 160
                                     ++GLC+ G    AL++F  + N        CK  
Sbjct: 437 ARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLEN--------CKFA 488

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
            +   ++++ +G+C+   ++ A ELF ++ +E + PDVVTYT +I G C      +A  L
Sbjct: 489 SNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDL 548

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           F+EM ++G  PNVVTFN +M  LC N +  +   LL  M    + PDAS    +MD
Sbjct: 549 FLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVMD 604



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 19/241 (7%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S++IL     K+      + L++ +   G+ P + TY+          +V     + G I
Sbjct: 395 SYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYS----------KVGDARKLFGEI 444

Query: 79  LRSCFTPDAVTFT---SLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
                  D+++++     + GLC    + EA  +F  L       +V  + +LING+CR+
Sbjct: 445 QFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRS 504

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
               +A  LF  + N         +PD +TY+ +  GLCK G   KA +LFL+M+++   
Sbjct: 505 EKLEIAWELFNRLCNE------ALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCA 558

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+VVT+ +L+RG C  ++  +   L  +M  + + P+  T  ++M+ L K+    E   L
Sbjct: 559 PNVVTFNTLMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVMDILLKDENYHECLNL 618

Query: 256 L 256
           L
Sbjct: 619 L 619



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M    +  + ++   L+   C      E   +F  ++ +G +PN  TF  ++  LC  G
Sbjct: 132 RMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEG 191

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG-------CM 300
           K+ EA R+ ++M     RP A     L+ G C TG    A +L  +M  NG       C 
Sbjct: 192 KIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAM-INGNSDFGINCK 250

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             V SY  +I+  CK+  +E A   + EM  KGI P VVTY +
Sbjct: 251 PTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTS 293



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 8/177 (4%)

Query: 174 CKEG--FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           CK G   + +A   F +M      P +  + +L         +     +   M   G+  
Sbjct: 81  CKSGDFTLHEALHFFNQMIHMQTTPALSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLK 140

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N ++ N+++N LC   ++ E   +  ++++ G RP+   +  L+ G CL G++  A  +F
Sbjct: 141 NFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVF 200

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK----GI--RPTVVTYN 342
             M    C     + G+LI+G C+      AL L+  M++     GI  +PTVV+Y+
Sbjct: 201 KIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYS 257


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 175/341 (51%), Positives = 230/341 (67%), Gaps = 1/341 (0%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F  F  M+  +P+PP + SF  L   LAK KHY  V  L+ ++   G+ PD  T NIL+N
Sbjct: 81  FQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLN 139

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           C C + RV  G  V+  ILR  + PD VT+T+LIKGLC E RI +AA LFT+++  GC P
Sbjct: 140 CLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTP 199

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  TY TL+ GLCRTG+  +AL L +EM N +  +G+  KP  I+YS I D LCK+   D
Sbjct: 200 NAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRED 259

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A++LF +MK + + P V++YTSLI GFC    W EAK LF EM++QGVQPNVVTFNV++
Sbjct: 260 EARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLI 319

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK GK+ EA  LLE+MIQ G+ P+   YN+L++GFCL G +N A+ELFVSM S GC 
Sbjct: 320 DVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCE 379

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            DV  Y +LINGYCK  ++E A+ LY+ ML  G RP V TY
Sbjct: 380 PDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTY 420



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 168/327 (51%), Gaps = 6/327 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +++    P V S+  L         ++    LF  + + G+ P++ T+N+LI+  CK G+
Sbjct: 268 MKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGK 327

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +L  +++    P+ +T+ SLI+G C    +  A  LF  + + GC+PDV  YT 
Sbjct: 328 VIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTV 387

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LING C+T     A+ L+      NG   V  +PD  TY  +  GL + G V  AK+LF 
Sbjct: 388 LINGYCKTSKVEEAMKLY------NGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFG 441

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            MK   I  D+  Y   + G C      EA  LF ++    ++ ++  FN +++ LCK G
Sbjct: 442 VMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAG 501

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K++ A  L E + Q  ++PD   YN ++  FC  G+V +A  LF  ME NGC  D  +Y 
Sbjct: 502 KLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYA 561

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGI 334
            LI G+ ++K++E  + L   M+ + +
Sbjct: 562 TLIRGFFESKKLEKVVELLHMMVQRDV 588



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 161/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++I+   L K++  D    LF+ +   G+ P + +Y  LI+ FC  G+      +
Sbjct: 240 PVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRL 299

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+ VTF  LI  LC E +++EA  L   +   G  P++ TY +LI G C 
Sbjct: 300 FNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCL 359

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  LF  M +        C+PD I Y+ + +G CK   V++A +L+  M     
Sbjct: 360 VGDLNSARELFVSMPSKG------CEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGK 413

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TY +L+ G        +AK LF  M   G+  ++  + + +N LCKNG + EA  
Sbjct: 414 RPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAME 473

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +    ++ D   +N L+DG C  G++  A ELF  +       DV +Y I+I+ +C
Sbjct: 474 LFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFC 533

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  ++  A  L+ +M   G  P  +TY T
Sbjct: 534 RGGQVVKANILFQKMEKNGCTPDKITYAT 562



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 174/334 (52%), Gaps = 12/334 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKR-LNSIGLF-----PDLYTYNILINCFCKMGRV 68
           P   ++  L   L +  +    L L +  LN   L+     P + +Y+I+I+  CK  R 
Sbjct: 199 PNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRE 258

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +   +     TP  +++TSLI G C   +  EA  LF ++   G +P+V T+  L
Sbjct: 259 DEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVL 318

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I+ LC+ G  I A +L E M     + G+V  P+ +TY+++ +G C  G ++ A+ELF+ 
Sbjct: 319 IDVLCKEGKVIEAKDLLEVMI----QRGIV--PNLLTYNSLIEGFCLVGDLNSARELFVS 372

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M  +   PDV+ YT LI G+C  +   EA  L+  M+  G +P+V T+  ++  L + GK
Sbjct: 373 MPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGK 432

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + +A +L  +M   G+  D  +Y   ++G C  G +  A ELF  ++S     D+  +  
Sbjct: 433 VGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNC 492

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           LI+G CK  ++E A  L+ ++  + ++P VVTYN
Sbjct: 493 LIDGLCKAGKLETAWELFEKLPQEELQPDVVTYN 526



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 144/289 (49%), Gaps = 14/289 (4%)

Query: 63  CKMGRVSP--GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CK G ++    F     ++ S  TP   +FT L+ GL       +   L+ ++R  G  P
Sbjct: 70  CKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  T   L+N LC          + E +A   G       PD +TY+T+  GLC E  + 
Sbjct: 130 DCCTLNILLNCLCNVNR------VGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRIS 183

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG------VQPNVV 234
           KA  LF +M+     P+ +TY +L++G C   + + A  L  EM++         +P V+
Sbjct: 184 KAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVI 243

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           ++++I++ LCK+ + DEA  L E M   G+ P    Y +L+ GFC  G+   AK LF  M
Sbjct: 244 SYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEM 303

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + G   +V ++ +LI+  CK  ++  A  L   M+ +GI P ++TYN+
Sbjct: 304 VNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNS 352



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 130/256 (50%), Gaps = 6/256 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L          ++   LF  + S G  PD+  Y +LIN +CK  +V     +
Sbjct: 345 PNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKL 404

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+    PD  T+ +L+ GL    ++ +A  LF  ++ +G   D++ Y   +NGLC+
Sbjct: 405 YNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCK 464

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ LF ++ + N +  + C      ++ + DGLCK G ++ A ELF K+  E +
Sbjct: 465 NGCLFEAMELFNKLKSYNIKLDIEC------FNCLIDGLCKAGKLETAWELFEKLPQEEL 518

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY  +I  FC      +A  LF +M   G  P+ +T+  ++    ++ K+++   
Sbjct: 519 QPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVE 578

Query: 255 LLELMIQIGVRPDASV 270
           LL +M+Q  V  D ++
Sbjct: 579 LLHMMVQRDVSLDVNI 594



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 63/125 (50%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +++++  P  +  + I    L KN      + LF +L S  +  D+  +N LI+  CK G
Sbjct: 442 VMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAG 501

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++   + +  ++ +    PD VT+  +I   C   ++++A  LF K+   GC PD  TY 
Sbjct: 502 KLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYA 561

Query: 127 TLING 131
           TLI G
Sbjct: 562 TLIRG 566


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 171/340 (50%), Positives = 230/340 (67%), Gaps = 1/340 (0%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M+R  P+P  + SFN L   LAK KHY  V SL+ ++   GL  D  T NIL+NC C
Sbjct: 57  FHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLC 115

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + R+  GF     ILR  ++P+ VT+ +LIKGLC E RI EA  LF +++  GC PDV 
Sbjct: 116 NVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVV 175

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLI GLC TG+  +AL L +EM N    + + CKP+ ITY+ I DGLCK G  D+AK
Sbjct: 176 TYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAK 235

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +LF +MK + + P +++Y SLI GFC A  W E+K L  EM+DQG+QP++VTFNV+++ L
Sbjct: 236 QLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTL 295

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA +LL +MI+ G+ PD   YN+L++GFC+ G +N A+ELFVSM S GC  DV
Sbjct: 296 CKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDV 355

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY +LINGY K  ++E A+ LY+EML  G RP V+TY++
Sbjct: 356 ISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDS 395



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 168/329 (51%), Gaps = 12/329 (3%)

Query: 15  PPVCSFNIL---FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P + S+N L   F C  K   ++    L   +   GL PD+ T+N+LI+  CK G+V   
Sbjct: 248 PSIISYNSLIHGFCCAGK---WEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEA 304

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +LG ++ S   PD VT+ SLI+G C    +  A  LF  + + GC+PDV +Y  LING
Sbjct: 305 KKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLING 364

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
             +T     A+ L+ EM        V  +P+ ITY ++  G+   G VD AK+LF  MK 
Sbjct: 365 YSKTLKVEEAMKLYNEM------LLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 418

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             I  +  TY   + G C  +   EA  LF E+     +  +   N +++ LCK GK++ 
Sbjct: 419 HGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLET 478

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  L E +   G  P+   Y  ++ GFC  G+V++A  L   ME+NGC  D+ +Y  L+ 
Sbjct: 479 AWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMR 538

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           G+ ++ ++E  + L   M  K + P  +T
Sbjct: 539 GFYESNKLEEVVQLLHRMAQKDVSPDAIT 567



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 173/333 (51%), Gaps = 12/333 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKR-LNSIGLF-----PDLYTYNILINCFCKMGRV 68
           P V ++  L   L    + +  L L +  LN I  +     P++ TYNI+++  CK+GR 
Sbjct: 172 PDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRE 231

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +   +      P  +++ SLI G C   +  E+  L  ++   G +PD+ T+  L
Sbjct: 232 DEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVL 291

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I+ LC+ G  I A  L   M     E G+V  PD +TY+++ +G C  G ++ A+ELF+ 
Sbjct: 292 IDTLCKEGKVIEAKKLLGVMI----ESGIV--PDLVTYNSLIEGFCMVGDLNSARELFVS 345

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M  +   PDV++Y  LI G+       EA  L+ EM+  G +PNV+T++ ++  +   GK
Sbjct: 346 MPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGK 405

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +D+A +L  +M   G+  ++  Y   +DG C    +  A +LF  ++S+    ++ +   
Sbjct: 406 VDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNC 465

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           LI+G CK  ++E A  L+ ++ ++G  P VVTY
Sbjct: 466 LIDGLCKAGKLETAWELFEKLSNEGHEPNVVTY 498



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 8/177 (4%)

Query: 174 CKEGFVDKAKEL--FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           CK G V     L  F  M      P + ++  L+ G      +++   L+ +M   G+  
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           +  T N+++N LC   ++ E       +++ G  P+   YNTL+ G C+  R++ A  LF
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR------PTVVTYN 342
           + M+  GC  DV +YG LI G C    I  AL L+ EML+   R      P V+TYN
Sbjct: 163 LRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYN 219



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 244 CKNGKMD--EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           CK G +    A     LM++    P  S +N L+ G       ++   L+  M  +G   
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D  +  IL+N  C    +    + ++ +L +G  P +VTYNT
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNT 144


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 171/341 (50%), Positives = 227/341 (66%), Gaps = 9/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F  F  M+  +P+PP + SF  L   LAK KHY  V  L+ ++   G+ PD  T NIL+N
Sbjct: 81  FQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLN 139

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           C C + RV  G  V+  ILR  + PD VT+T+LIKGLC E RI +AA LFT+++  GC P
Sbjct: 140 CLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTP 199

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  TY TL+ GLCRTG+  +AL L +EM N +  +G+  KP  I+YS I D LCK+   D
Sbjct: 200 NAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRED 259

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A++LF +MK + + P V++YTSL+        W EAK LF EM++QGVQPNVVTFNV++
Sbjct: 260 EARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVLI 311

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK GK+ EA  LLE+MIQ G+ P+   YN+L++GFCL G +N A+ELFVSM S GC 
Sbjct: 312 DVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCE 371

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            DV  Y +LINGYCK  ++E A+ LY+ ML  G RP V TY
Sbjct: 372 PDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTY 412



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 160/302 (52%), Gaps = 6/302 (1%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           ++    LF  + + G+ P++ T+N+LI+  CK G+V     +L  +++    P+ +T+ S
Sbjct: 285 WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNS 344

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LI+G C    +  A  LF  + + GC+PDV  YT LING C+T     A+ L+      N
Sbjct: 345 LIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY------N 398

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
           G   V  +PD  TY  +  GL + G V  AK+LF  MK   I  D+  Y   + G C   
Sbjct: 399 GMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNG 458

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              EA  LF ++    ++ ++  FN +++ LCK GK++ A  L E + Q  ++PD   YN
Sbjct: 459 CLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYN 518

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            ++  FC  G+V +A  LF  ME NGC  D  +Y  LI G+ ++K++E  + L   M+ +
Sbjct: 519 IMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQR 578

Query: 333 GI 334
            +
Sbjct: 579 DV 580



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 130/256 (50%), Gaps = 6/256 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L          ++   LF  + S G  PD+  Y +LIN +CK  +V     +
Sbjct: 337 PNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKL 396

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+    PD  T+ +L+ GL    ++ +A  LF  ++ +G   D++ Y   +NGLC+
Sbjct: 397 YNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCK 456

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ LF ++ + N +  + C      ++ + DGLCK G ++ A ELF K+  E +
Sbjct: 457 NGCLFEAMELFNKLKSYNIKLDIEC------FNCLIDGLCKAGKLETAWELFEKLPQEEL 510

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY  +I  FC      +A  LF +M   G  P+ +T+  ++    ++ K+++   
Sbjct: 511 QPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVE 570

Query: 255 LLELMIQIGVRPDASV 270
           LL +M+Q  V  D ++
Sbjct: 571 LLHMMVQRDVSLDVNI 586



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 8/177 (4%)

Query: 174 CKEGFVD--KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           CK G +   +A + F  M   N  P + ++T L+ G      +++   L+ +M   G+ P
Sbjct: 70  CKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           +  T N+++N LC   ++ E   ++  +++ G  PD   Y TL+ G C+  R+++A  LF
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLF 189

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG------IRPTVVTYN 342
             M+  GC  +  +YG L+ G C+   I  AL L+ EML+         +P V++Y+
Sbjct: 190 TRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYS 246



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 63/125 (50%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +++++  P  +  + I    L KN      + LF +L S  +  D+  +N LI+  CK G
Sbjct: 434 VMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAG 493

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++   + +  ++ +    PD VT+  +I   C   ++++A  LF K+   GC PD  TY 
Sbjct: 494 KLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYA 553

Query: 127 TLING 131
           TLI G
Sbjct: 554 TLIRG 558



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 52/128 (40%)

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           +A   F  MM     P + +F  +++ L K     +   L   M   G+ PD    N L+
Sbjct: 79  QAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +  C   RV     +   +   G + D+ +Y  LI G C    I  A  L++ M   G  
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCT 198

Query: 336 PTVVTYNT 343
           P  +TY T
Sbjct: 199 PNAITYGT 206



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 244 CKNGKMD--EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           CK G +   +A +   LM+     P  S +  L+ G       ++   L+  M  +G   
Sbjct: 70  CKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D  +  IL+N  C    +   L++ + +L +G  P +VTY T
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTT 171


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/340 (46%), Positives = 215/340 (63%), Gaps = 26/340 (7%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M+R  P+P  + SFN L   LAK KHY  V SL+ ++   GL  D  T NIL+NC C
Sbjct: 57  FHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLC 115

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + R+  GF     ILR  ++P+ VT+ +LIKGLC E RI EA  LF +++  GC PDV 
Sbjct: 116 NVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVV 175

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLI GLC TG+  +AL L +EM N    + + CKP+ ITY+ I DGLCK G  D+AK
Sbjct: 176 TYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAK 235

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +LF +MK + + P+                         EM+DQG+QP++VTFNV+++ L
Sbjct: 236 QLFEEMKTQGMIPN-------------------------EMLDQGLQPDMVTFNVLIDTL 270

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA +LL +MI+ G+ PD   YN+L++GFC+ G +N A+ELFVSM S GC  DV
Sbjct: 271 CKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDV 330

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY +LINGY K  ++E A+ LY+EML  G RP V+TY++
Sbjct: 331 ISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDS 370



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 170/336 (50%), Gaps = 16/336 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFP----------DLYTYNILINCFCK 64
           P V ++NI+   L K    D    LF+ + + G+ P          D+ T+N+LI+  CK
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCK 272

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
            G+V     +LG ++ S   PD VT+ SLI+G C    +  A  LF  + + GC+PDV +
Sbjct: 273 EGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVIS 332

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  LING  +T     A+ L+ EM        V  +P+ ITY ++  G+   G VD AK+
Sbjct: 333 YNVLINGYSKTLKVEEAMKLYNEM------LLVGKRPNVITYDSLLKGIFLAGKVDDAKK 386

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           LF  MK   I  +  TY   + G C  +   EA  LF E+     +  +   N +++ LC
Sbjct: 387 LFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLC 446

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K GK++ A  L E +   G  P+   Y  ++ GFC  G+V++A  L   ME+NGC  D+ 
Sbjct: 447 KAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDII 506

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +Y  L+ G+ ++ ++E  + L   M  K + P  +T
Sbjct: 507 TYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAIT 542


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 151/340 (44%), Positives = 208/340 (61%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML MHP PP    FN L   +AK K Y TV SL  +++S G+ PD+YT NILIN FC
Sbjct: 57  FNRMLHMHP-PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFC 115

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + R+   F VL +IL+    PD  TFT+LI+GLC E +I +A  LF K+   G +P+V 
Sbjct: 116 HLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVV 175

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+ G+T  A+ L   M  GN      C+PD + Y++I D LCK+  V +A 
Sbjct: 176 TYGTLINGLCKVGNTNAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCKDRQVTEAF 229

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF KM  + I+PD+ TYTSLI   C   +W     L  +M++  + P+VV F+ +++ L
Sbjct: 230 NLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDAL 289

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  ++++MI  GV P+   YN LMDG CL   ++ A ++F +M  NG   +V
Sbjct: 290 CKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNV 349

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  LINGYCK + ++ A  L+ EM  K + P  VTYNT
Sbjct: 350 ISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 389



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 175/329 (53%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  +   L K++      +LF ++   G+ PD++TY  LI+  C +        +
Sbjct: 207 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTL 266

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++ S   PD V F++++  LC E +I EA  +   +   G +P+V TY  L++G C 
Sbjct: 267 LNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCL 326

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +F+ M + NG       P+ I+Y+T+ +G CK   +DKA  LF +M  + +
Sbjct: 327 QSEMDEAVKVFDTMVH-NGY-----APNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL 380

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY +L+   C+     +A  LF EM+  G  P++ T+ ++++ LCK   +DEA  
Sbjct: 381 IPNTVTYNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMA 439

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ +    + PD  +Y  ++DG C  G +  A+++F ++ S G   +V +Y I+ING C
Sbjct: 440 LLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLC 499

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   ++ A  L+ EM   G  P   TYNT
Sbjct: 500 RRGLLDEANKLFMEMDGNGCSPDGCTYNT 528



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 162/345 (46%), Gaps = 28/345 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L   L     +  V +L  ++ +  + PD+  ++ +++  CK G+++    V
Sbjct: 242 PDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDV 301

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++     P+ VT+ +L+ G C +S + EA  +F  +   G  P+V +Y TLING C+
Sbjct: 302 VDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCK 361

Query: 135 TGHTIVALNLFEEMAN-------------------GNGEFGVVC---------KPDAITY 166
                 A  LFEEM                     G  +  +            PD  TY
Sbjct: 362 IQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIALFHEMVAHGQIPDLATY 421

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
             + D LCK+  +D+A  L   ++  N++PD+  YT +I G C A +   A+ +F  +  
Sbjct: 422 RILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSS 481

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G++PNV T+ +++N LC+ G +DEA++L   M   G  PD   YNT+  G        R
Sbjct: 482 KGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALR 541

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           A +L   M + G   DV +  +L+   C +K  +    + SE + 
Sbjct: 542 AIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQILSEFVQ 586



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 9/252 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+  +   P V S+N L     K +  D    LF+ +    L P+  TYN L++  
Sbjct: 336 VFDTMVH-NGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-X 393

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +GR+     +   ++     PD  T+  L+  LC +S + EA AL   +      PD+
Sbjct: 394 CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDI 453

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YT +I+G+CR G    A ++F  +++         +P+  TY+ + +GLC+ G +D+A
Sbjct: 454 QIYTIVIDGMCRAGELEAARDIFSNLSSKG------LRPNVRTYTIMINGLCRRGLLDEA 507

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF++M     +PD  TY ++ +G     +   A  L  EM+ +G   +V T  +++  
Sbjct: 508 NKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEM 567

Query: 243 LCKNGKMDEASR 254
           LC + K+D++ +
Sbjct: 568 LCDD-KLDQSVK 578



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M   +  P  V +  L+        +     L  +M   G+ P+V T N+
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  ++++G +PD + + TL+ G C+ G++  A  LF  M   G
Sbjct: 110 LINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 169

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +V +YG LING CK      A+ L   M     +P VV Y +
Sbjct: 170 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTS 214



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 8/177 (4%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P + ++ IL   L K  H D  ++L K +    + PD+  Y I+I+  C+ G +  
Sbjct: 412 HGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEA 471

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   +      P+  T+T +I GLC    + EA  LF ++   GC PD  TY T+  
Sbjct: 472 ARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQ 531

Query: 131 GLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           GL +    + A+ L +EM A G          D  T + + + LC +      K++ 
Sbjct: 532 GLLQNKEALRAIQLLQEMLARG-------FSADVSTTTLLVEMLCDDKLDQSVKQIL 581



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 60/132 (45%)

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N  ++A   F  M+     P+ V FN ++  + K  +      L   M   G+ PD    
Sbjct: 48  NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 107

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N L++ FC   R+  A  +   +   G   D  ++  LI G C   +I  AL L+ +M+ 
Sbjct: 108 NILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 167

Query: 332 KGIRPTVVTYNT 343
           +G +P VVTY T
Sbjct: 168 EGFQPNVVTYGT 179


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/340 (44%), Positives = 208/340 (61%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ +L MHP PP +  F  L   +AK KHY TVLSL  +++S G+ P++YT NILIN FC
Sbjct: 44  FNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFC 102

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV   F VL +IL+    PD  TFT+LI+GLC E +I EA  LF K+   G +P+V 
Sbjct: 103 HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVV 162

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+ G+T  A+ L   M  GN      C+PD + Y++I D LCK+  V +A 
Sbjct: 163 TYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCKDRQVTEAF 216

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+PD+ TYTSL+   C   +W     L  +M++  + P+VV F+ +++ L
Sbjct: 217 NLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL 276

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  ++++MIQ GV PD   Y TLMDG CL   ++ A ++F  M   G   DV
Sbjct: 277 CKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDV 336

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  LINGYCK  +I+ A+ L+ EM  K   P   TYNT
Sbjct: 337 ISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 376



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 176/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  +   L K++      +LF ++   G+ PD++TY  L++  C +        +
Sbjct: 194 PDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTL 253

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++ S   PD V F++++  LC E ++ EA  +   +   G +PDV TYTTL++G C 
Sbjct: 254 LNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 313

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +F+ M            PD I+Y+T+ +G CK   +DKA  LF +M  +  
Sbjct: 314 QSEMDEAVKVFDMMVRKG------FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW 367

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY +L+ G C+     +A  LF EM+ +G  P++VT++++++ LCKN  ++EA  
Sbjct: 368 IPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMA 427

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ +    + PD  VYN ++DG C  G +  A++LF ++ S G    V++Y I+I+G C
Sbjct: 428 LLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLC 487

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +  A  L+ EM      P   TYNT
Sbjct: 488 KRGLLNEANKLFMEMDGNDCSPDGCTYNT 516



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 171/340 (50%), Gaps = 7/340 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+    SP  + ++  L   L     +  V +L  ++ +  + PD+  ++ +++
Sbjct: 216 FNLFSQMVGQGISPD-IFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 274

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G+V+    ++  +++    PD VT+T+L+ G C +S + EA  +F  +   G  P
Sbjct: 275 ALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAP 334

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV +YTTLING C+      A+ LFEEM            PD  TY+T+  GLC  G + 
Sbjct: 335 DVISYTTLINGYCKIHKIDKAMYLFEEMCRKE------WIPDTKTYNTLMHGLCHVGRLQ 388

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  LF +M      PD+VTY+ L+   C      EA  L   +    + P++  +N+I+
Sbjct: 389 DAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIII 448

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + +C+ G+++ A  L   +   G+ P    YN ++ G C  G +N A +LF+ M+ N C 
Sbjct: 449 DGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCS 508

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            D  +Y  +  G+ +N E   A+ L  EML++G    V T
Sbjct: 509 PDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVST 548



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 147/296 (49%), Gaps = 6/296 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  F+ +   L K         +   +   G+ PD+ TY  L++  C    +     V
Sbjct: 264 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 323

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R  F PD +++T+LI G C   +I +A  LF ++      PD  TY TL++GLC 
Sbjct: 324 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCH 383

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ LF EM    G+      PD +TYS + D LCK   +++A  L   ++  N+
Sbjct: 384 VGRLQDAIALFHEMV-ARGQM-----PDLVTYSILLDSLCKNCHLEEAMALLKAIEASNL 437

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPD+  Y  +I G C A +   A+ LF  +  +G+ P+V T+N++++ LCK G ++EA++
Sbjct: 438 NPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANK 497

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           L   M      PD   YNT+  GF       RA +L   M + G   DV +  +L+
Sbjct: 498 LFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLV 553



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 7/274 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I D M++     P V ++  L          D  + +F  +   G  PD+ +Y  LIN +
Sbjct: 288 IVDMMIQ-RGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGY 346

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+ ++     +   + R  + PD  T+ +L+ GLC   R+ +A ALF ++ A G  PD+
Sbjct: 347 CKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDL 406

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY+ L++ LC+  H   A+ L + +   N        PD   Y+ I DG+C+ G ++ A
Sbjct: 407 VTYSILLDSLCKNCHLEEAMALLKAIEASN------LNPDIQVYNIIIDGMCRAGELEAA 460

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++LF  +  + ++P V TY  +I G C     NEA  LF+EM      P+  T+N I   
Sbjct: 461 RDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARG 520

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
             +N +   A +LLE M+  G   D S    L++
Sbjct: 521 FLQNNETLRAIQLLEEMLARGFSADVSTTTLLVE 554



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R     P V S+  L     K    D  + LF+ +      PD  TYN L++  
Sbjct: 323 VFDMMVR-KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGL 381

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +GR+     +   ++     PD VT++ L+  LC    + EA AL   + A    PD+
Sbjct: 382 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDI 441

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  +I+G+CR G    A +LF  +++          P   TY+ +  GLCK G +++A
Sbjct: 442 QVYNIIIDGMCRAGELEAARDLFSNLSSKG------LHPSVWTYNIMIHGLCKRGLLNEA 495

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF++M   + +PD  TY ++ RGF   N+   A  L  EM+ +G   +V T  +++  
Sbjct: 496 NKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEM 555

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           L  +G +D++S    LM+ +    D   +  + +GF L G
Sbjct: 556 LSDDG-LDQSSCF--LMLSVLSEDDRRYFIFIPEGFDLLG 592



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F ++   +  P +V +  L+        ++    L  +M   GV PNV T N+
Sbjct: 37  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNI 96

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  ++++G +PD + + TL+ G C+ G++  A  LF  M   G
Sbjct: 97  LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 156

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +V +YG LING CK      A+ L   M     +P VV Y +
Sbjct: 157 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTS 201



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI---GVRP 266
           + N  ++A   F  ++     P++V F  ++  +    KM   S +L L  Q+   GV P
Sbjct: 33  HFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSI---AKMKHYSTVLSLSTQMDSFGVPP 89

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           +    N L++ FC   RV  A  +   +   G   D  ++  LI G C   +I  AL L+
Sbjct: 90  NVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLF 149

Query: 327 SEMLSKGIRPTVVTYNT 343
            +M+ +G +P VVTY T
Sbjct: 150 DKMIDEGFQPNVVTYGT 166


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 146/340 (42%), Positives = 219/340 (64%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F++M+  HP  P +  F+ L   L + KHY TVLSL KR+  + +  D++ +NILINCF 
Sbjct: 72  FNHMIHKHP-LPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFS 130

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++ RV   F VLG+I++  F PDAVTF+SLI GLC E +   A   F ++ A G +P++ 
Sbjct: 131 RLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLH 190

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY T+I G C+ G T VA+ L ++M    G      +PD + Y+TI DGLCK+  V +A 
Sbjct: 191 TYNTIIKGFCKIGKTTVAVGLLKKMDKAGG------RPDIVIYNTIIDGLCKDRLVSEAL 244

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           ++F ++K + + PDV TY+ L+ G C ++   EA  LF EMM   + P+VVTFN+++++L
Sbjct: 245 DIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKL 304

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G + EA  ++++MI+ GV P+ + YN+LM+G+CL  +V  A+ +F +M + GCM +V
Sbjct: 305 CKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNV 364

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY ILINGYCK + I+ A  L+ EM  +G+ P    YNT
Sbjct: 365 VSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNT 404



 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 187/328 (57%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F+ L   L     +   +  F  + + G  P+L+TYN +I  FCK+G+ +    +
Sbjct: 152 PDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGL 211

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ ++   PD V + ++I GLC +  + EA  +F++++  G +PDVFTY+ L++GLC 
Sbjct: 212 LKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCN 271

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A  LF EM + N        PD +T++ + D LCKEG + +A+ +   M ++ +
Sbjct: 272 SDQKEEASALFNEMMSLN------IMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGV 325

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY SL+ G+C  N   EA+ +F  M+ +G  PNVV++N+++N  CK  ++DEA  
Sbjct: 326 EPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARE 385

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M   G+ P+   YNTL+ G C  GR   A+ELF  M++ GC  D+ +  IL++  C
Sbjct: 386 LFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLC 445

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ AL L+  M    ++P +VTY+
Sbjct: 446 KLGYLDNALRLFRAMQDSCLKPNLVTYD 473



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 136/272 (50%), Gaps = 6/272 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N +   L K++     L +F  +   G+ PD++TY+IL++  C   +      +
Sbjct: 222 PDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASAL 281

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD VTF  L+  LC E  + EA  +   +   G +P+  TY +L+NG C 
Sbjct: 282 FNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCL 341

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F+ M          C P+ ++Y+ + +G CK   +D+A+ELF +M    +
Sbjct: 342 QNKVFEARMVFDAMITKG------CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGL 395

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+   Y +LI G C A    EA+ LF +M  QG  P++VT  ++++ LCK G +D A R
Sbjct: 396 IPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALR 455

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           L   M    ++P+   Y+ L+     +G++ R
Sbjct: 456 LFRAMQDSCLKPNLVTYDILIRAMYKSGKIYR 487


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 151/340 (44%), Positives = 207/340 (60%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML MHP PP    FN L   +AK K Y TV SL  +++S G+ PD+YT NILIN FC
Sbjct: 55  FNRMLHMHP-PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFC 113

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + R    F VL +IL+    PD  TFT+LI+GLC E +I +A  LF K+   G +P+V 
Sbjct: 114 HLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVV 173

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+ G+T  A+ L   M  GN      C+PD + Y++I D LCK+  V +A 
Sbjct: 174 TYGTLINGLCKVGNTNAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCKDRQVTEAF 227

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF KM  + I+PD+ TYTSLI   C   +W     L  +M++  + P+VV F+ +++ L
Sbjct: 228 NLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDAL 287

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  ++++MI  GV P+   YN LMDG CL   ++ A ++F +M  NG   +V
Sbjct: 288 CKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNV 347

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  LINGYCK + ++ A  L+ EM  K + P  VTYNT
Sbjct: 348 ISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 387



 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 176/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  +   L K++      +LF ++   G+ PD++TY  LI+  C +        +
Sbjct: 205 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTL 264

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++ S   PD V F++++  LC E +I EA  +   +   G +P+V TY  L++G C 
Sbjct: 265 LNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCL 324

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +F+ M + NG       P+ I+Y+T+ +G CK   +DKA  LF +M  + +
Sbjct: 325 QSEMDEAVKVFDTMVH-NGY-----APNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL 378

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY +L+ G C+     +A  LF EM+  G  P++ T+ ++++ LCK   +DEA  
Sbjct: 379 IPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMA 438

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ +    + PD  +Y  ++DG C  G +  A+++F ++ S G   +V +Y I+ING C
Sbjct: 439 LLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLC 498

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   ++ A  L+ EM   G  P   TYNT
Sbjct: 499 RRGLLDEANKLFMEMDGNGCSPDGCTYNT 527



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 164/326 (50%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L   L     +  V +L  ++ +  + PD+  ++ +++  CK G+++    V
Sbjct: 240 PDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDV 299

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++     P+ VT+ +L+ G C +S + EA  +F  +   G  P+V +Y TLING C+
Sbjct: 300 VDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCK 359

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LFEEM            P+ +TY+T+  GLC  G +  A  LF +M     
Sbjct: 360 IQRMDKATYLFEEMCQKE------LIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQ 413

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ TY  L+   C  +  +EA  L   +    + P++  + ++++ +C+ G+++ A  
Sbjct: 414 IPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARD 473

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   +   G+RP+   Y  +++G C  G ++ A +LF+ M+ NGC  D  +Y  +  G  
Sbjct: 474 IFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLL 533

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           +NKE   A+ L  EML++G    V T
Sbjct: 534 QNKEALRAIQLLQEMLARGFSADVST 559



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 156/317 (49%), Gaps = 6/317 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  F+ +   L K         +   +   G+ P++ TYN L++  C    +     V
Sbjct: 275 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 334

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++ + + P+ +++ +LI G C   R+ +A  LF ++      P+  TY TL++GLC 
Sbjct: 335 FDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCH 394

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ LF EM   +G+      PD  TY  + D LCK+  +D+A  L   ++  N+
Sbjct: 395 VGRLQDAIALFHEMV-AHGQI-----PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNM 448

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD+  YT +I G C A +   A+ +F  +  +G++PNV T+ +++N LC+ G +DEA++
Sbjct: 449 DPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANK 508

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M   G  PD   YNT+  G        RA +L   M + G   DV +  +L+   C
Sbjct: 509 LFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 568

Query: 315 KNKEIEGALSLYSEMLS 331
            +K  +    + SE + 
Sbjct: 569 DDKLDQSVKQILSEFVQ 585



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 8/252 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+  +   P V S+N L     K +  D    LF+ +    L P+  TYN L++  
Sbjct: 334 VFDTMVH-NGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGL 392

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +GR+     +   ++     PD  T+  L+  LC +S + EA AL   +      PD+
Sbjct: 393 CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDI 452

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YT +I+G+CR G    A ++F  +++         +P+  TY+ + +GLC+ G +D+A
Sbjct: 453 QIYTIVIDGMCRAGELEAARDIFSNLSSKG------LRPNVRTYTIMINGLCRRGLLDEA 506

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF++M     +PD  TY ++ +G     +   A  L  EM+ +G   +V T  +++  
Sbjct: 507 NKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEM 566

Query: 243 LCKNGKMDEASR 254
           LC + K+D++ +
Sbjct: 567 LCDD-KLDQSVK 577



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 8/177 (4%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P + ++ IL   L K  H D  ++L K +    + PD+  Y I+I+  C+ G +  
Sbjct: 411 HGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEA 470

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   +      P+  T+T +I GLC    + EA  LF ++   GC PD  TY T+  
Sbjct: 471 ARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQ 530

Query: 131 GLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           GL +    + A+ L +EM A G          D  T + + + LC +      K++ 
Sbjct: 531 GLLQNKEALRAIQLLQEMLARG-------FSADVSTTTLLVEMLCDDKLDQSVKQIL 580



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M   +  P  V +  L+        +     L  +M   G+ P+V T N+
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 107

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   +   A  +L  ++++G++PD + + TL+ G C+ G++  A  LF  M   G
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 167

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +V +YG LING CK      A+ L   M     +P VV Y +
Sbjct: 168 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTS 212



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 59/132 (44%)

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N  ++A   F  M+     P+ V FN ++  + K  +      L   M   G+ PD    
Sbjct: 46  NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 105

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N L++ FC   R   A  +   +   G   D  ++  LI G C   +I  AL L+ +M+ 
Sbjct: 106 NILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 165

Query: 332 KGIRPTVVTYNT 343
           +G +P VVTY T
Sbjct: 166 EGFQPNVVTYGT 177


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 153/341 (44%), Positives = 217/341 (63%), Gaps = 8/341 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHY-DTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           F++ML   P P  +  FN L   + K +HY D V+SL K++   GL PD YT ++LINCF
Sbjct: 109 FNHMLHRKPRPC-IIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCF 167

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            ++ RV  GF VL +I++       VTF +LI GLC   +  +A  LF  + A G +PDV
Sbjct: 168 FQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDV 227

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYTT+INGLC+ G T+ A  LF +M    GE G  C+PD +TYSTI D LCK+  V++A
Sbjct: 228 HTYTTIINGLCKIGETVAAAGLFRKM----GEAG--CQPDVVTYSTIIDSLCKDRRVNEA 281

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++F  MK + I+P++ TY SLI+G C  + W EA  +  EMM   + PN+VTF++++N 
Sbjct: 282 LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 341

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G + EA  +L+ M ++GV P+   Y++LM+G+ L   V  A++LF  M + GC  D
Sbjct: 342 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPD 401

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           VFSY ILINGYCK K I  A  L++EM+ +G+ P +V+YNT
Sbjct: 402 VFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNT 442



 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 183/338 (54%), Gaps = 7/338 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF YM +     P + ++N L   L     +    ++   + S+ + P++ T+++LIN F
Sbjct: 284 IFSYM-KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIF 342

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G V     VL  +      P+ VT++SL+ G   ++ ++EA  LF  +   GCKPDV
Sbjct: 343 CKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDV 402

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           F+Y  LING C+      A  LF EM +          PD ++Y+T+ DGLC+ G + +A
Sbjct: 403 FSYNILINGYCKAKRIGEAKQLFNEMIHQG------LTPDIVSYNTLIDGLCQLGRLREA 456

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF  M      PD+ TY+ L+ GFC      +A  LF  M    ++PN+V +N++++ 
Sbjct: 457 HDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDA 516

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           +CK+  + EA +L   +   G++P+  +Y T+++G C  G ++ A E F +ME +GC  +
Sbjct: 517 MCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPN 576

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            FSY ++I G+ ++K+   A+ L  EM  KG    V T
Sbjct: 577 EFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 184/329 (55%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L K         LF+++   G  PD+ TY+ +I+  CK  RV+    +
Sbjct: 225 PDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDI 284

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P+  T+ SLI+GLC  SR  EA+A+  ++ +    P++ T++ LIN  C+
Sbjct: 285 FSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCK 344

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  + + M     E GV  +P+ +TYS++ +G   +  V +A++LF  M  +  
Sbjct: 345 EGNVFEARGVLKTMT----EMGV--EPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGC 398

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV +Y  LI G+C A    EAK LF EM+ QG+ P++V++N +++ LC+ G++ EA  
Sbjct: 399 KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHD 458

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+  G  PD   Y+ L+DGFC  G + +A  LF +M+S     ++  Y ILI+  C
Sbjct: 459 LFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMC 518

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K++ ++ A  L+SE+  +G++P V  Y T
Sbjct: 519 KSRNLKEARKLFSELFVQGLQPNVQIYTT 547


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/340 (44%), Positives = 208/340 (61%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ +L MHP PP +  F  L   +AK KHY TVLSL  +++S G+ P++YT NILIN FC
Sbjct: 53  FNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFC 111

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV   F VL +IL+    PD  TFT+LI+GLC E +I EA  LF K+   G +P+V 
Sbjct: 112 HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVV 171

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+ G+T  A+ L   M  GN      C+PD + Y++I D LCK+  V +A 
Sbjct: 172 TYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCKDRQVTEAF 225

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+PD+ TYTSL+   C   +W     L  +M++  + P+VV F+ +++ L
Sbjct: 226 NLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL 285

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  ++++MIQ GV PD   Y TLMDG CL   ++ A ++F  M   G   DV
Sbjct: 286 CKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDV 345

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  LINGYCK  +I+ A+ L+ EM  K   P   TYNT
Sbjct: 346 ISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 385



 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 176/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  +   L K++      +LF ++   G+ PD++TY  L++  C +        +
Sbjct: 203 PDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTL 262

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++ S   PD V F++++  LC E ++ EA  +   +   G +PDV TYTTL++G C 
Sbjct: 263 LNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 322

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +F+ M            PD I+Y+T+ +G CK   +DKA  LF +M  +  
Sbjct: 323 QSEMDEAVKVFDMMVRKG------FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW 376

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY +L+ G C+     +A  LF EM+ +G  P++VT++++++ LCKN  ++EA  
Sbjct: 377 IPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMA 436

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ +    + PD  VYN ++DG C  G +  A++LF ++ S G    V++Y I+I+G C
Sbjct: 437 LLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLC 496

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +  A  L+ EM      P   TYNT
Sbjct: 497 KRGLLNEANKLFMEMDGNDCSPDGCTYNT 525



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 169/333 (50%), Gaps = 7/333 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+    SP  + ++  L   L     +  V +L  ++ +  + PD+  ++ +++
Sbjct: 225 FNLFSQMVGQGISPD-IFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 283

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G+V+    ++  +++    PD VT+T+L+ G C +S + EA  +F  +   G  P
Sbjct: 284 ALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAP 343

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV +YTTLING C+      A+ LFEEM            PD  TY+T+  GLC  G + 
Sbjct: 344 DVISYTTLINGYCKIHKIDKAMYLFEEMCRKE------WIPDTKTYNTLMYGLCHVGRLQ 397

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  LF +M      PD+VTY+ L+   C      EA  L   +    + P++  +N+I+
Sbjct: 398 DAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIII 457

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + +C+ G+++ A  L   +   G+ P    YN ++ G C  G +N A +LF+ M+ N C 
Sbjct: 458 DGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCS 517

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
            D  +Y  +  G+ +N E   A+ L  EML++G
Sbjct: 518 PDGCTYNTIARGFLQNNETLRAIQLLEEMLARG 550



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 141/288 (48%), Gaps = 6/288 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  F+ +   L K         +   +   G+ PD+ TY  L++  C    +     V
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 332

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R  F PD +++T+LI G C   +I +A  LF ++      PD  TY TL+ GLC 
Sbjct: 333 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCH 392

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ LF EM    G+      PD +TYS + D LCK   +++A  L   ++  N+
Sbjct: 393 VGRLQDAIALFHEMV-ARGQM-----PDLVTYSILLDSLCKNRHLEEAMALLKAIEASNL 446

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPD+  Y  +I G C A +   A+ LF  +  +G+ P+V T+N++++ LCK G ++EA++
Sbjct: 447 NPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANK 506

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L   M      PD   YNT+  GF       RA +L   M + G   D
Sbjct: 507 LFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSAD 554



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 9/267 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           I D M++    P  V    ++ G CL      D  + +F  +   G  PD+ +Y  LIN 
Sbjct: 297 IVDMMIQRGVEPDVVTYTTLMDGHCL--QSEMDEAVKVFDMMVRKGFAPDVISYTTLING 354

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +CK+ ++     +   + R  + PD  T+ +L+ GLC   R+ +A ALF ++ A G  PD
Sbjct: 355 YCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPD 414

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY+ L++ LC+  H   A+ L + +   N        PD   Y+ I DG+C+ G ++ 
Sbjct: 415 LVTYSILLDSLCKNRHLEEAMALLKAIEASN------LNPDIQVYNIIIDGMCRAGELEA 468

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A++LF  +  + ++P V TY  +I G C     NEA  LF+EM      P+  T+N I  
Sbjct: 469 ARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIAR 528

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDA 268
              +N +   A +LLE M+  G   D+
Sbjct: 529 GFLQNNETLRAIQLLEEMLARGFSADS 555



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F ++   +  P +V +  L+        ++    L  +M   GV PNV T N+
Sbjct: 46  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNI 105

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  ++++G +PD + + TL+ G C+ G++  A  LF  M   G
Sbjct: 106 LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 165

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +V +YG LING CK      A+ L   M     +P VV Y +
Sbjct: 166 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTS 210



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI---GVRP 266
           + N  ++A   F  ++     P++V F  ++  + K   M   S +L L  Q+   GV P
Sbjct: 42  HFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAK---MKHYSTVLSLSTQMDSFGVPP 98

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           +    N L++ FC   RV  A  +   +   G   D  ++  LI G C   +I  AL L+
Sbjct: 99  NVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLF 158

Query: 327 SEMLSKGIRPTVVTYNT 343
            +M+ +G +P VVTY T
Sbjct: 159 DKMIDEGFQPNVVTYGT 175


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 143/340 (42%), Positives = 216/340 (63%), Gaps = 6/340 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F++ML   P P  +    +L   +   ++YD V+SL K++  +GL P++YT +I +NCFC
Sbjct: 80  FNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFC 139

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++ RV  GF VL ++++    P  VTFT+LI GLC      +A  LF  + A GC+PDV+
Sbjct: 140 QLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVY 199

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY T+INGLC+ G T  A  L ++M          C+P+ +TYST+ D LC++  V++A 
Sbjct: 200 TYNTIINGLCKIGETAAAAGLLKKMEEAG------CQPNMVTYSTLIDSLCRDRLVNEAL 253

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           ++F  MK + I+PD+ TYTSLI+G C  + W EA  L  EM    + P++VTFNV+++  
Sbjct: 254 DIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTF 313

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  +L+ M ++GV P+   Y++LM G+ L   V  A++LF  M + GC  ++
Sbjct: 314 CKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNI 373

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           FSY ILINGYCK K I+ A+ L++EM+ +G+ P  V+YNT
Sbjct: 374 FSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNT 413



 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 190/327 (58%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L K   +   + LF  + + G  PD+YTYN +IN  CK+G  +    +
Sbjct: 161 PTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGL 220

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++  +   P+ VT+++LI  LC +  + EA  +F+ ++A G  PD+FTYT+LI GLC+
Sbjct: 221 LKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCK 280

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L  EM + N        PD +T++ + D  CKEG V +A  +   M +  +
Sbjct: 281 FSRWKEASALLNEMTSLN------IMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGV 334

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTY+SL+ G+    D  EA+ LF  M+ +G +PN+ ++N+++N  CK  ++DEA +
Sbjct: 335 EPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQ 394

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   MI  G+ P+   YNTL+ GFC  G++  A++LF +M +NG + D+F+Y IL++G+C
Sbjct: 395 LFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFC 454

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K   +  A  L+  M S  ++P +V Y
Sbjct: 455 KQGYLGKAFRLFRAMQSTYLKPNLVMY 481



 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 182/338 (53%), Gaps = 11/338 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF YM +     P + ++  L   L K   +    +L   + S+ + PD+ T+N+L++ F
Sbjct: 255 IFSYM-KAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTF 313

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G+VS    VL  +      P+ VT++SL+ G    + ++EA  LF  +   GCKP++
Sbjct: 314 CKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNI 373

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           F+Y  LING C+      A+ LF EM +          P+ ++Y+T+  G C+ G + +A
Sbjct: 374 FSYNILINGYCKAKRIDEAMQLFNEMIHQG------LTPNNVSYNTLIHGFCQLGKLREA 427

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++LF  M      PD+ TY+ L+ GFC      +A  LF  M    ++PN+V + ++++ 
Sbjct: 428 QDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHA 487

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           +CK+G   +A +L   +   G++P   +Y T+++G C  G ++ A E F +ME++GC  D
Sbjct: 488 MCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPD 547

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKG----IRP 336
             SY ++I G  ++K+   AL L  EM  +G    +RP
Sbjct: 548 EISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADVRP 585



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 163/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ L   L +++  +  L +F  + + G+ PD++TY  LI   CK  R      +
Sbjct: 231 PNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASAL 290

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD VTF  L+   C E ++ EA  +   +   G +P+V TY++L+ G   
Sbjct: 291 LNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSL 350

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A  LF  M          CKP+  +Y+ + +G CK   +D+A +LF +M  + +
Sbjct: 351 WTDVVEARKLFHVMITKG------CKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGL 404

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V+Y +LI GFC      EA+ LF  M   G  P++ T++++++  CK G + +A R
Sbjct: 405 TPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFR 464

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M    ++P+  +Y  L+   C +G    A++LF  +   G    V  Y  +ING C
Sbjct: 465 LFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLC 524

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ AL  +  M + G  P  ++YN
Sbjct: 525 KEGLLDEALEAFRNMEADGCPPDEISYN 552


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 150/340 (44%), Positives = 208/340 (61%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ MLRM P PP    FN L   +AK KH+ T+LSL  +++S G+ P++YT +ILIN FC
Sbjct: 49  FNRMLRMQP-PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFC 107

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV   F VL +IL+    PD  TFT+LI+G+  E +I EA  LF K+   G +PDV 
Sbjct: 108 HLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVV 167

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+ G+T  A+ L   M   N      C+P+   Y+TI D LCK+  V +A 
Sbjct: 168 TYGTLINGLCKVGNTSAAIRLLGSMVQKN------CQPNVFAYNTIIDSLCKDRQVTEAF 221

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+PD+ TY SLI   C   +W     L  EM+D  + P+VV+FN +++ L
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDAL 281

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  +++ MIQ GV P+   Y  LMDG CL   ++ A ++F +M   GCM +V
Sbjct: 282 CKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNV 341

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  LINGYCK + I+ A+ L+ EM  + + P  VTY+T
Sbjct: 342 ISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYST 381



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 177/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K++      +LF  + + G+ PD++TYN LI+  C +        +
Sbjct: 199 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 258

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ S   PD V+F +++  LC E ++ EA  +  K+   G +P+V TYT L++G C 
Sbjct: 259 LNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCL 318

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +F+ M          C P+ I+Y+T+ +G CK   +DKA  LF +M  + +
Sbjct: 319 LSEMDEAVKVFDTMVCKG------CMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQEL 372

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY++LI G C+     +A  LF EM+     PN+VT+ ++++ LCKN  + EA  
Sbjct: 373 IPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMA 432

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ +    + PD  V N  +DG C  G +  A++LF ++ S G   DV++Y I+ING C
Sbjct: 433 LLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLC 492

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   ++ A  L+ EM   G       YNT
Sbjct: 493 RRGLLDEASKLFREMDENGCTLNGCIYNT 521



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L     +  V +L   +    + PD+ ++N +++  CK G+V+    V
Sbjct: 234 PDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDV 293

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++++    P+ VT+T+L+ G C  S + EA  +F  +   GC P+V +Y TLING C+
Sbjct: 294 VDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCK 353

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ LF EM            PD +TYST+  GLC    +  A  LF +M   + 
Sbjct: 354 IQRIDKAMYLFGEMCRQE------LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQ 407

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++VTY  L+   C      EA  L   +    + P++   N+ ++ +C+ G+++ A  
Sbjct: 408 IPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARD 467

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++PD   Y+ +++G C  G ++ A +LF  M+ NGC  +   Y  +  G+ 
Sbjct: 468 LFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFL 527

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           +N E   A+ L  EM+++G      T
Sbjct: 528 RNNETSRAIQLLQEMVARGFSADAST 553



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 124/276 (44%), Gaps = 29/276 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L          D  + +F  +   G  P++ +YN LIN +CK+ R+     +
Sbjct: 304 PNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYL 363

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G + R    PD VT+++LI GLC   R+ +A ALF ++ A    P++ TY  L++ LC+
Sbjct: 364 FGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCK 423

Query: 135 TGHTIVALNLFEEMANGN------------------GEFGVV-----------CKPDAIT 165
             +   A+ L + +   N                  GE                +PD  T
Sbjct: 424 NRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWT 483

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           YS + +GLC+ G +D+A +LF +M +     +   Y ++ RGF   N+ + A  L  EM+
Sbjct: 484 YSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMV 543

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            +G   +  T  + +  L  +G      ++L   +Q
Sbjct: 544 ARGFSADASTMTLFVKMLSDDGLDQSLKQILREFVQ 579



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M      P  V +  L+         +    L  +M   G+ PN+ T ++
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  ++++G +PD + + TL+ G  + G++  A  LF  M   G
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEG 161

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              DV +YG LING CK      A+ L   M+ K  +P V  YNT
Sbjct: 162 FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNT 206


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 147/343 (42%), Positives = 209/343 (60%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             +F+ MLRM P PP +  F+ L   + + KHY TVLSL+K+++S G+  + YT NILIN
Sbjct: 39  LSLFNRMLRMRP-PPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILIN 97

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FC + R+   F VLG IL+  + P   TFT+LI+GLC E +I EA  LF K+   G +P
Sbjct: 98  SFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQP 157

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV TY TLINGLC+ G+T  A+     M   N      C+P  + YSTI D LCK+  + 
Sbjct: 158 DVLTYGTLINGLCKVGNTSTAIRFLRSMEQRN------CRPTVVVYSTIIDSLCKDRQLT 211

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  LF  M  + I+P+  TY+SLI G C    W EA  LF  M+ + + P+ +TFN ++
Sbjct: 212 EALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLV 271

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK G + +A  ++++MIQ  ++PD   YN+LMDG CL   + +   +F +M   GC+
Sbjct: 272 DALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCV 331

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             V SY  LINGYCK + ++ A+ L+ EM  +G+ P  VTYNT
Sbjct: 332 PSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNT 374



 Score =  203 bits (517), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 173/328 (52%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K++     LSLF  + + G+ P+ +TY+ LI+  C +G       +
Sbjct: 192 PTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRL 251

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD +TF +L+  LC E  +++A  +   +     KPDV TY +L++G C 
Sbjct: 252 FYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCL 311

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  +N+F+ M          C P  I+Y+T+ +G CK   +DKA  LF +M  + +
Sbjct: 312 RSEMGKTVNVFDTMVRKG------CVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGL 365

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY +LI G C+     +A  LF EM+  G  P++VT+ ++ + LCKN ++ EA  
Sbjct: 366 IPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMV 425

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+++    + PD  +Y+ +MDG C  G +  A++LF  + S G   DV +Y I+ING C
Sbjct: 426 LLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLC 485

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +   +  A  L+ EM   G  P   TYN
Sbjct: 486 QQGLLAEASKLFGEMDENGCSPNACTYN 513



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 161/309 (52%), Gaps = 6/309 (1%)

Query: 32  HYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFT 91
           H+   + LF  +    + PD  T+N L++  CK G V     V+  +++S   PD VT+ 
Sbjct: 244 HWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYN 303

Query: 92  SLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151
           SL+ G C  S + +   +F  +   GC P V +YTTLING C+      A+ LFEEM+  
Sbjct: 304 SLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMS-- 361

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
             + G++  PD +TY+T+  GLC  G +  A  LF +M      PD+VTY  L    C  
Sbjct: 362 --QQGLI--PDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKN 417

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           +   EA  L   +    + P++  ++++M+ +C+ G+++ A  L   +   G+ PD   Y
Sbjct: 418 HRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTY 477

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             +++G C  G +  A +LF  M+ NGC  +  +Y ++  G+ +N E   A+ L+ EMLS
Sbjct: 478 TIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLS 537

Query: 332 KGIRPTVVT 340
           +G    V T
Sbjct: 538 RGFSIDVST 546



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 132/277 (47%), Gaps = 6/277 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L             +++F  +   G  P + +Y  LIN +CK+  +     +
Sbjct: 297 PDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGL 356

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    PD VT+ +LI GLC   R+ +A ALF ++  +G  PD+ TY  L + LC+
Sbjct: 357 FEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCK 416

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ L + +   N        PD   YS + DG+C+ G ++ A++LF K+  + +
Sbjct: 417 NHRLAEAMVLLKVIEGTN------LDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGL 470

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDV TYT +I G C      EA  LF EM + G  PN  T+N+I     +N +   A +
Sbjct: 471 HPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQ 530

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           L + M+  G   D S    L++     G     K++ 
Sbjct: 531 LFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQIL 567



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 126/254 (49%), Gaps = 7/254 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R     P V S+  L     K +  D  + LF+ ++  GL PD  TYN LI+  
Sbjct: 321 VFDTMVR-KGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGL 379

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +GR+     +   ++     PD VT+  L   LC   R+ EA  L   +      PD+
Sbjct: 380 CHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDI 439

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+ +++G+CR G    A +LF ++++          PD  TY+ + +GLC++G + +A
Sbjct: 440 HIYSIVMDGMCRAGELEAARDLFSKLSSKG------LHPDVRTYTIMINGLCQQGLLAEA 493

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF +M +   +P+  TY  + RGF   N+   A  LF EM+ +G   +V T  +++  
Sbjct: 494 SKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEM 553

Query: 243 LCKNGKMDEASRLL 256
           L  +G      ++L
Sbjct: 554 LSDDGLDQSVKQIL 567



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A  LF +M      P +V ++ L+        ++    L+ +M   G+  N  T N+
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  ++++G +P  + + TL+ G C+ G++  A +LF  M   G
Sbjct: 95  LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEG 154

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              DV +YG LING CK      A+     M  +  RPTVV Y+T
Sbjct: 155 FQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYST 199


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  294 bits (752), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 147/340 (43%), Positives = 213/340 (62%), Gaps = 6/340 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F++ML   P P  +    +L   +   ++YDTV+SL K++   GL P++YT +ILINCF 
Sbjct: 85  FNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFS 144

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV   F VL +I++    P  VTFT+LI  LC   +  +A  LF  + A GC+PDV+
Sbjct: 145 HLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVY 204

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TYTT+INGLC+ G T  A  L ++M          C+P+ +TYSTI D   K+  V++A 
Sbjct: 205 TYTTIINGLCKIGETAAAAGLLKKMEEAG------CQPNVVTYSTIIDSHRKDRRVNEAL 258

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           ++F  MK + I+PD+ TY SLI+G C  + W EA  L  EM    + P++VTFNV+++ +
Sbjct: 259 DIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTI 318

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  +L+ M ++GV PD   Y++LM G+ L   V  A++LF +M + GC  DV
Sbjct: 319 CKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDV 378

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           FSY ILINGYCK K I+ A  L++EM+ +G+ P  V+YNT
Sbjct: 379 FSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNT 418



 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 184/328 (56%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L K   +   + LF  + + G  PD+YTY  +IN  CK+G  +    +
Sbjct: 166 PTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGL 225

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++  +   P+ VT++++I     + R+ EA  +F+ ++  G  PD+FTY +LI GLC 
Sbjct: 226 LKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCN 285

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L  EM + N        PD +T++ + D +CKEG V +A+ +   M +  +
Sbjct: 286 FSQWKEASALLNEMRSLN------IMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGV 339

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY+SL+ G+   ++  EA+ LF  M+ +G +P+V ++N+++N  CK  ++DEA +
Sbjct: 340 EPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQ 399

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   MI  G+ P+   YNTL+ G C  G +  A+ LF +M +NG + ++F+Y IL++G+C
Sbjct: 400 LFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFC 459

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K      A  L+  M S   +P +V YN
Sbjct: 460 KQGYFGKAFRLFRAMQSTYSKPNLVMYN 487



 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 183/338 (54%), Gaps = 7/338 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF YM ++    P + ++N L   L     +    +L   + S+ + PD+ T+N+L++  
Sbjct: 260 IFSYM-KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTI 318

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G+VS    VL  +      PD VT++SL+ G    S ++EA  LF  +   GCKPDV
Sbjct: 319 CKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDV 378

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           F+Y  LING C+      A  LF EM +          P+ ++Y+T+  GLC+ G + +A
Sbjct: 379 FSYNILINGYCKVKRIDEAKQLFNEMIHQG------LTPNNVSYNTLIHGLCQLGSLREA 432

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + LF  M      P++ TY+ L+ GFC    + +A  LF  M     +PN+V +N++++ 
Sbjct: 433 RNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDA 492

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           +CK+G + +A +L   +   G++P+A +Y T+++G C  G ++ A E F +ME +GC  D
Sbjct: 493 MCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPD 552

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             SY ++I G+  +K+   A+ L  EM  KG    V T
Sbjct: 553 EISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 163/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +     K++  +  L +F  +   G+ PD++TYN LI   C   +      +
Sbjct: 236 PNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASAL 295

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD VTF  L+  +C E ++ EA  +   +   G +PDV TY++L+ G   
Sbjct: 296 LNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSL 355

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A  LF+ M          CKPD  +Y+ + +G CK   +D+AK+LF +M  + +
Sbjct: 356 RSEVVEARKLFDAMITKG------CKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGL 409

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V+Y +LI G C      EA+ LF  M   G  PN+ T++++++  CK G   +A R
Sbjct: 410 TPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFR 469

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M     +P+  +YN L+D  C +G +  A++LF  +   G   +   Y  +ING C
Sbjct: 470 LFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLC 529

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ AL  +  M   G  P  ++YN
Sbjct: 530 KEGLLDEALEAFRNMEEDGCPPDEISYN 557


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  293 bits (750), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 145/340 (42%), Positives = 207/340 (60%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML   P PP    FN L   +AK KH+ T+LSL ++++S G+ PD+YT  I+IN  C
Sbjct: 58  FNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLC 116

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV   F  L +IL+    PDA TFT+LI+GLC E +I EA  LF K+   G +P+V 
Sbjct: 117 HLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVV 176

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+ G+T  A+ L   M  GN      C+P+ + +ST+ D LCK+  V +A 
Sbjct: 177 TYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +F +M  + I+P++VTY SLI G C   +W     L  EM+D  + P+V T N +++ L
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 290

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G + EA  ++++MI  GV P+   YN LMDG CL   V+ A ++F +M    C+ +V
Sbjct: 291 CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV 350

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  LINGYCK + ++ A+ L+ EM  + + P  VTYNT
Sbjct: 351 ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNT 390



 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 175/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  F+ L   L K++      ++F  + + G+ P++ TYN LI+  CK+        +
Sbjct: 208 PNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTL 267

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++ S   PD  T  +++  LC E  + EA  +   +   G +P+V TY  L++G C 
Sbjct: 268 MNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCL 327

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                VA+ +F+ M + +      C  + I+Y+T+ +G CK   VDKA  LF +M  + +
Sbjct: 328 RNEVDVAVKVFDTMVHKD------CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 381

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY +LI G C+     +A  LF EM+ +G  P++VT+  + + LCKN  +D+A  
Sbjct: 382 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMA 441

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ +      PD  +Y T++DG C  G +  A++LF ++ S G   +V++Y I+I+G C
Sbjct: 442 LLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLC 501

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +  A  L+SEM   G  P   TYN
Sbjct: 502 KQGLLAEASKLFSEMNKNGCSPNDCTYN 529



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 165/340 (48%), Gaps = 7/340 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F IF  M+    SP  + ++N L   L K   +  V +L   +    + PD++T N +++
Sbjct: 230 FNIFSEMITKGISPN-IVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G V+    V+  ++     P+ VT+ +L+ G C  + +  A  +F  +    C  
Sbjct: 289 ALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVA 348

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V +Y TLING C+      A+ LFEEM+           P+ +TY+T+  GLC  G + 
Sbjct: 349 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQE------LTPNTVTYNTLIHGLCHVGRLQ 402

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  LF +M      PD+VTY +L    C     ++A  L   +      P++  +  I+
Sbjct: 403 DAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTIL 462

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + +C+ G++++A  L   +   G++P+   YN ++ G C  G +  A +LF  M  NGC 
Sbjct: 463 DGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCS 522

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +  +Y ++  G+ +N E    + L  EML++G    V T
Sbjct: 523 PNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST 562



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 6/240 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S+N L     K +  D  + LF+ ++   L P+  TYN LI+  C +GR+     +  
Sbjct: 350 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 409

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     PD VT+ +L   LC    + +A AL   +      PD+  YTT+++G+CR G
Sbjct: 410 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 469

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A +LF  +++         +P+  TY+ +  GLCK+G + +A +LF +M     +P
Sbjct: 470 ELEDARDLFSNLSSKG------LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSP 523

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +  TY  + RGF   N+      L  EM+ +G   +V T  +++  L  +G      ++L
Sbjct: 524 NDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL 583



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 35/200 (17%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D+A   F +M  +   P  V +  L+         +    L  +M   G+ P+V T  +
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N LC   ++D A   L  ++++G +PDA+ + TL+ G C+ G++  A  LF  M   G
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 299 CMRDVFSYGILING-----------------------------------YCKNKEIEGAL 323
              +V +YG LING                                    CK++++  A 
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           +++SEM++KGI P +VTYN+
Sbjct: 231 NIFSEMITKGISPNIVTYNS 250



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%)

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
           + N  +EA   F  M+ +   P+ V FN ++  + K         L   M   G+ PD  
Sbjct: 47  HFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVY 106

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
               +++  C   RV+ A      +   G   D  ++  LI G C   +I  AL L+ +M
Sbjct: 107 TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM 166

Query: 330 LSKGIRPTVVTYNT 343
           + +G +P VVTY T
Sbjct: 167 IGEGFQPNVVTYGT 180



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +  +   + +    +    LF  L+S GL P+++TYNI+I+  CK G ++    +
Sbjct: 453 PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKL 512

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + ++  +P+  T+  + +G    +  +    L  ++ A G   DV T T L+  L  
Sbjct: 513 FSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 572

Query: 135 TG 136
            G
Sbjct: 573 DG 574


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  293 bits (749), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 148/340 (43%), Positives = 205/340 (60%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML MHP PP +  F  L   + K KHY TVLSL  +++S G+ P++YT NILIN FC
Sbjct: 56  FNRMLHMHP-PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFC 114

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + R+   F VL +IL+    P+  TF +LI+GLC E +I E   LF K+   G +P+V 
Sbjct: 115 HLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVV 174

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+ G T  A+ L   M  GN      C+PD + Y++I D LCK+  V +A 
Sbjct: 175 TYGTLINGLCKVGSTSAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCKDRQVTQAF 228

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+P + TY SLI   C   +W     L  EM++  + PNVV F+ +++ L
Sbjct: 229 NLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDAL 288

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  ++++MI+ GV P+   YN LMDG CL   ++ A ++F +M   G   DV
Sbjct: 289 CKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDV 348

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  LINGYCK + IE A+ L+ EM  K + P  VTY+T
Sbjct: 349 VSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 388



 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 179/331 (54%), Gaps = 12/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  +   L K++      +LF  +   G+ P ++TYN LI+  C +        +
Sbjct: 206 PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL 265

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ S   P+ V F++++  LC E ++MEA  +   +   G +P+V TY  L++G C 
Sbjct: 266 LNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCL 325

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
                 A+ +F+ M         VCK   PD ++YST+ +G CK   ++KA  LF +M  
Sbjct: 326 RSEMDEAVKVFDTM---------VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR 376

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + + P+ VTY++L+ G C+     +A  LF EM+ +G  P+ V++ ++++ LCKN ++DE
Sbjct: 377 KELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDE 436

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  LL+ +    + PD  +Y  ++DG C  G +  A++LF ++ S G   +V++Y I+IN
Sbjct: 437 AIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMIN 496

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G C+   +  A  L+ EM  KG  P   TYN
Sbjct: 497 GLCQQGLLAEASKLFGEMKRKGYSPNGCTYN 527



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 165/340 (48%), Gaps = 7/340 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+    SP  + ++N L   L     +  V +L   + +  + P++  ++ +++
Sbjct: 228 FNLFSEMIHQGISPS-IFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 286

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G+V     V+  +++    P+ VT+ +L+ G C  S + EA  +F  +   G  P
Sbjct: 287 ALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAP 346

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV +Y+TLING C+      A+ LFEEM            P+ +TYST+  GLC  G + 
Sbjct: 347 DVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE------LIPNTVTYSTLMHGLCHVGRLQ 400

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  LF +M      PD V+Y  L+   C     +EA  L   +    + P++  + +++
Sbjct: 401 DAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVI 460

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + +C+ G+++ A  L   +   G+ P+   Y  +++G C  G +  A +LF  M+  G  
Sbjct: 461 DGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYS 520

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +  +Y ++  G+ +N E    + L  EML++G    V T
Sbjct: 521 PNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVST 560



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 157/321 (48%), Gaps = 14/321 (4%)

Query: 15  PPVCSFNILFGCLAKN----KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           P V  F+ +   L K     + +D V  + KR    G+ P++ TYN L++  C    +  
Sbjct: 276 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKR----GVEPNVVTYNALMDGHCLRSEMDE 331

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              V   ++   F PD V++++LI G C   RI +A  LF ++      P+  TY+TL++
Sbjct: 332 AVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMH 391

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLC  G    A+ LF EM    G+      PD ++Y  + D LCK   +D+A  L   ++
Sbjct: 392 GLCHVGRLQDAIALFHEMVT-RGQI-----PDFVSYCILLDYLCKNRRLDEAIALLKAIE 445

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
             N++PD+  YT +I G C A +   A+ LF  +  +G+ PNV T+ +++N LC+ G + 
Sbjct: 446 GSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLA 505

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EAS+L   M + G  P+   YN +  GF       R  +L   M + G   DV +  +L+
Sbjct: 506 EASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLV 565

Query: 311 NGYCKNKEIEGALSLYSEMLS 331
                +   +    + SE L 
Sbjct: 566 EMLSDDGLDQSVKQILSEFLQ 586



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 35/200 (17%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M   +  P +  +T L+        ++    L  +M   G+ PN+ T N+
Sbjct: 49  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 108

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  ++++G +P+ + +NTL+ G C+ G++     LF  M   G
Sbjct: 109 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 168

Query: 299 CMRDVFSYGILING-----------------------------------YCKNKEIEGAL 323
              +V +YG LING                                    CK++++  A 
Sbjct: 169 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAF 228

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           +L+SEM+ +GI P++ TYN+
Sbjct: 229 NLFSEMIHQGISPSIFTYNS 248



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 58/132 (43%)

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N  ++A   F  M+     P++  F  ++  + K         L   M   G+ P+    
Sbjct: 47  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 106

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N L++ FC   R+  A  +   +   G   ++ ++  LI G C   +I   L L+ +M+ 
Sbjct: 107 NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 166

Query: 332 KGIRPTVVTYNT 343
           +G +P VVTY T
Sbjct: 167 EGFQPNVVTYGT 178


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/340 (43%), Positives = 205/340 (60%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML MHP PP +  F  L   + K KHY TVLSL  +++S G+ P++YT NILIN FC
Sbjct: 47  FNRMLHMHP-PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFC 105

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + R+   F VL +IL+    P+  TF +LI+GLC E +I E   LF K+   G +P+V 
Sbjct: 106 HLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVV 165

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+ G T  A+ L   M  GN      C+PD + Y++I D LCK+  V +A 
Sbjct: 166 TYGTLINGLCKVGSTSAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCKDRQVTQAF 219

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+P + TY SLI   C   +W     L  EM++  + PNVV F+ +++ L
Sbjct: 220 NLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDAL 279

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  ++++MI+ GV P+   YN LMDG CL   ++ A ++F +M   G   DV
Sbjct: 280 CKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDV 339

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  LINGYCK + IE A+ L+ EM  K + P  VTY+T
Sbjct: 340 VSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 379



 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 179/331 (54%), Gaps = 12/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  +   L K++      +LF  +   G+ P ++TYN LI+  C +        +
Sbjct: 197 PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL 256

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ S   P+ V F++++  LC E ++MEA  +   +   G +P+V TY  L++G C 
Sbjct: 257 LNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCL 316

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
                 A+ +F+ M         VCK   PD ++YST+ +G CK   ++KA  LF +M  
Sbjct: 317 RSEMDEAVKVFDTM---------VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR 367

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + + P+ VTY++L+ G C+     +A  LF EM+ +G  P+ V++ ++++ LCKN ++DE
Sbjct: 368 KELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDE 427

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  LL+ +    + PD  +Y  ++DG C  G +  A++LF ++ S G   +V++Y I+IN
Sbjct: 428 AIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMIN 487

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G C+   +  A  L+ EM  KG  P   TYN
Sbjct: 488 GLCQQGLLAEASKLFGEMKRKGYSPNGCTYN 518



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 165/340 (48%), Gaps = 7/340 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+    SP  + ++N L   L     +  V +L   + +  + P++  ++ +++
Sbjct: 219 FNLFSEMIHQGISPS-IFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 277

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G+V     V+  +++    P+ VT+ +L+ G C  S + EA  +F  +   G  P
Sbjct: 278 ALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAP 337

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV +Y+TLING C+      A+ LFEEM            P+ +TYST+  GLC  G + 
Sbjct: 338 DVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE------LIPNTVTYSTLMHGLCHVGRLQ 391

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  LF +M      PD V+Y  L+   C     +EA  L   +    + P++  + +++
Sbjct: 392 DAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVI 451

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + +C+ G+++ A  L   +   G+ P+   Y  +++G C  G +  A +LF  M+  G  
Sbjct: 452 DGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYS 511

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +  +Y ++  G+ +N E    + L  EML++G    V T
Sbjct: 512 PNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVST 551



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 157/321 (48%), Gaps = 14/321 (4%)

Query: 15  PPVCSFNILFGCLAKN----KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           P V  F+ +   L K     + +D V  + KR    G+ P++ TYN L++  C    +  
Sbjct: 267 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKR----GVEPNVVTYNALMDGHCLRSEMDE 322

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              V   ++   F PD V++++LI G C   RI +A  LF ++      P+  TY+TL++
Sbjct: 323 AVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMH 382

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLC  G    A+ LF EM    G+      PD ++Y  + D LCK   +D+A  L   ++
Sbjct: 383 GLCHVGRLQDAIALFHEMVT-RGQI-----PDFVSYCILLDYLCKNRRLDEAIALLKAIE 436

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
             N++PD+  YT +I G C A +   A+ LF  +  +G+ PNV T+ +++N LC+ G + 
Sbjct: 437 GSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLA 496

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EAS+L   M + G  P+   YN +  GF       R  +L   M + G   DV +  +L+
Sbjct: 497 EASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLV 556

Query: 311 NGYCKNKEIEGALSLYSEMLS 331
                +   +    + SE L 
Sbjct: 557 EMLSDDGLDQSVKQILSEFLQ 577



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 35/200 (17%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M   +  P +  +T L+        ++    L  +M   G+ PN+ T N+
Sbjct: 40  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 99

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  ++++G +P+ + +NTL+ G C+ G++     LF  M   G
Sbjct: 100 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 159

Query: 299 CMRDVFSYGILING-----------------------------------YCKNKEIEGAL 323
              +V +YG LING                                    CK++++  A 
Sbjct: 160 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAF 219

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           +L+SEM+ +GI P++ TYN+
Sbjct: 220 NLFSEMIHQGISPSIFTYNS 239



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 58/132 (43%)

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N  ++A   F  M+     P++  F  ++  + K         L   M   G+ P+    
Sbjct: 38  NTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 97

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N L++ FC   R+  A  +   +   G   ++ ++  LI G C   +I   L L+ +M+ 
Sbjct: 98  NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 157

Query: 332 KGIRPTVVTYNT 343
           +G +P VVTY T
Sbjct: 158 EGFQPNVVTYGT 169


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/341 (43%), Positives = 214/341 (62%), Gaps = 8/341 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAK-NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           F++ML   P  P +  FN L   + +  ++YD V+SL K++   GL P+  T NILINCF
Sbjct: 78  FNHMLHRKP-LPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCF 136

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C M  V  GF VL ++++    P  +TFT+LI GLC      +A  LF  + A GC+PDV
Sbjct: 137 CLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDV 196

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +TYTT+INGLC+ G T  A  L ++M    GE G  C+PD +TYST+ D LCK+  V++A
Sbjct: 197 YTYTTIINGLCKMGETAAAAGLIKKM----GEVG--CQPDVVTYSTLIDSLCKDRLVNEA 250

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++F  MK + I+P VV+YTSLI+G C  + W EA  +  EM    + P++VTF+++++ 
Sbjct: 251 LDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDI 310

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G + EA  +L+ M ++GV P+   YN+LM G+ L   V  A++LF  M + GC  D
Sbjct: 311 FCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPD 370

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           VFSY ILINGYC  K I+ A  L++EM+ +G+ P  V+Y T
Sbjct: 371 VFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTT 411



 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 175/331 (52%), Gaps = 7/331 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF YM +     P V S+  L   L     +    ++   + S+ + PD+ T+++LI+ F
Sbjct: 253 IFSYM-KAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIF 311

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G V     VL  +      P+ +T+ SL+ G   +  ++EA  LF  +   GCKPDV
Sbjct: 312 CKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDV 371

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           F+Y+ LING C       A  LF EM +          P+ ++Y+T+    C+ G + +A
Sbjct: 372 FSYSILINGYCMVKRIDEAKQLFNEMIHQG------LTPNTVSYTTLIHAFCQLGKLREA 425

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +ELF  M      PD+ TY+ L+ GFC      +A  LF  M    ++PN+V + ++++ 
Sbjct: 426 RELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDS 485

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           +CK+G ++ A +L   +   G++PD  +Y T+++G C  G ++ A E F  ME +GC  +
Sbjct: 486 MCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPN 545

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
            FSY ++I G+ ++K+   A+ L  EM  KG
Sbjct: 546 EFSYNVIIRGFLQHKDESRAVQLIGEMRDKG 576



 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 177/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L K         L K++  +G  PD+ TY+ LI+  CK   V+    +
Sbjct: 194 PDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDI 253

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P  V++TSLI+GLC+ SR  EA+A+  ++ +    PD+ T++ LI+  C+
Sbjct: 254 FSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCK 313

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+ + A  + + M     E GV  +P+ ITY+++  G   +  V +A++LF  M     
Sbjct: 314 EGNVLEAQGVLKTMT----EMGV--EPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGC 367

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV +Y+ LI G+C     +EAK LF EM+ QG+ PN V++  +++  C+ GK+ EA  
Sbjct: 368 KPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARE 427

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M   G  PD   Y+ L++GFC  G + +A  LF +M+      ++  Y ILI+  C
Sbjct: 428 LFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMC 487

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+  +  A  L+SE+   G++P V  Y T
Sbjct: 488 KSGNLNHARKLFSELFVHGLQPDVQIYTT 516



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 166/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K++  +  L +F  + + G+ P + +Y  LI   C   R      +
Sbjct: 229 PDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAM 288

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD VTF+ LI   C E  ++EA  +   +   G +P+V TY +L++G   
Sbjct: 289 LNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSL 348

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A  LF+ M          CKPD  +YS + +G C    +D+AK+LF +M  + +
Sbjct: 349 QMEVVEARKLFDVMITRG------CKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGL 402

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V+YT+LI  FC      EA+ LF +M   G  P++ T++V++   CK G + +A R
Sbjct: 403 TPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFR 462

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M    ++P+  +Y  L+D  C +G +N A++LF  +  +G   DV  Y  +ING C
Sbjct: 463 LFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLC 522

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ AL  + +M   G  P   +YN
Sbjct: 523 KEGLLDEALEAFRKMEEDGCPPNEFSYN 550


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 145/340 (42%), Positives = 207/340 (60%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML   P PP    FN L   +AK KH+ T+LSL ++++S G+ PD+YT  I+IN  C
Sbjct: 58  FNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLC 116

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV   F  L +IL+    PDA TFT+LI+GLC E +I EA  LF K+   G +P+V 
Sbjct: 117 HLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVV 176

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+ G+T  A+ L   M  GN      C+P+ + +ST+ D LCK+  V +A 
Sbjct: 177 TYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +F +M  + I+P++VTY SLI G C   +W     L  EM+D  + P+V T N +++ L
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 290

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G + EA  ++++MI  GV P+   YN LMDG CL   V+ A ++F +M    C+ +V
Sbjct: 291 CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV 350

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  LINGYCK + ++ A+ L+ EM  + + P  VTYNT
Sbjct: 351 ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNT 390



 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 175/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  F+ L   L K++      ++F  + + G+ P++ TYN LI+  CK+        +
Sbjct: 208 PNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTL 267

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++ S   PD  T  +++  LC E  + EA  +   +   G +P+V TY  L++G C 
Sbjct: 268 MNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCL 327

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                VA+ +F+ M + +      C  + I+Y+T+ +G CK   VDKA  LF +M  + +
Sbjct: 328 RNEVDVAVKVFDTMVHKD------CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 381

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY +LI G C+     +A  LF EM+ +G  P++VT+  + + LCKN  +D+A  
Sbjct: 382 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMA 441

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ +      PD  +Y T++DG C  G +  A++LF ++ S G   +V++Y I+I+G C
Sbjct: 442 LLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLC 501

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +  A  L+SEM   G  P   TYN
Sbjct: 502 KQGLLAEASKLFSEMNKNGCSPNDCTYN 529



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 165/340 (48%), Gaps = 7/340 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F IF  M+    SP  + ++N L   L K   +  V +L   +    + PD++T N +++
Sbjct: 230 FNIFSEMITKGISPN-IVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 288

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G V+    V+  ++     P+ VT+ +L+ G C  + +  A  +F  +    C  
Sbjct: 289 ALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVA 348

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V +Y TLING C+      A+ LFEEM+           P+ +TY+T+  GLC  G + 
Sbjct: 349 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQE------LTPNTVTYNTLIHGLCHVGRLQ 402

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  LF +M      PD+VTY +L    C     ++A  L   +      P++  +  I+
Sbjct: 403 DAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTIL 462

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + +C+ G++++A  L   +   G++P+   YN ++ G C  G +  A +LF  M  NGC 
Sbjct: 463 DGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCS 522

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +  +Y ++  G+ +N E    + L  EML++G    V T
Sbjct: 523 PNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST 562



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 6/240 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S+N L     K +  D  + LF+ ++   L P+  TYN LI+  C +GR+     +  
Sbjct: 350 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 409

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     PD VT+ +L   LC    + +A AL   +      PD+  YTT+++G+CR G
Sbjct: 410 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 469

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A +LF  +++         +P+  TY+ +  GLCK+G + +A +LF +M     +P
Sbjct: 470 ELEDARDLFSNLSSKG------LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSP 523

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +  TY  + RGF   N+      L  EM+ +G   +V T  +++  L  +G      ++L
Sbjct: 524 NDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL 583



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 35/200 (17%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D+A   F +M  +   P  V +  L+         +    L  +M   G+ P+V T  +
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N LC   ++D A   L  ++++G +PDA+ + TL+ G C+ G++  A  LF  M   G
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 299 CMRDVFSYGILING-----------------------------------YCKNKEIEGAL 323
              +V +YG LING                                    CK++++  A 
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           +++SEM++KGI P +VTYN+
Sbjct: 231 NIFSEMITKGISPNIVTYNS 250



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 59/134 (44%)

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
           + N  +EA   F  M+ +   P+ V FN ++  + K         L   M   G+ PD  
Sbjct: 47  HFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVY 106

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
               +++  C   RV+ A      +   G   D  ++  LI G C   +I  AL L+ +M
Sbjct: 107 TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM 166

Query: 330 LSKGIRPTVVTYNT 343
           + +G +P VVTY T
Sbjct: 167 IGEGFQPNVVTYGT 180



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +  +   + +    +    LF  L+S GL P+++TYNI+I+  CK G ++    +
Sbjct: 453 PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKL 512

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + ++  +P+  T+  + +G    +  +    L  ++ A G   DV T T L+  L  
Sbjct: 513 FSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 572

Query: 135 TG 136
            G
Sbjct: 573 DG 574


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/340 (44%), Positives = 212/340 (62%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M+R++P P  V  F    G  AK K Y TV+SL  +++   +  ++Y+ NILINC C
Sbjct: 81  FYRMVRINPRPS-VVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLC 139

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++  V     VLG++ +    PDA+TF +LI GLC E +I EA  LF ++   G +P+V 
Sbjct: 140 RLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVI 199

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +YTT+INGLC+TG+T +A+++F++M   NG     CKP+ +TYSTI D LCK+  V+ A 
Sbjct: 200 SYTTVINGLCKTGNTSMAVDVFKKMEQ-NG-----CKPNVVTYSTIIDSLCKDRLVNDAM 253

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           E   +M +  I P+V TY S++ GFC     NEA  LF EM+ + V PN VTF ++++ L
Sbjct: 254 EFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGL 313

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G + EA  + E M + GV PD S YN LMDG+CL   +N AK++F  M   GC    
Sbjct: 314 CKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGA 373

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY ILINGYCK++ ++ A SL +EM  K + P  VTY+T
Sbjct: 374 HSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYST 413



 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 175/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K++  +  +     +   G+ P+++TYN +++ FC +G+++    +
Sbjct: 231 PNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRL 290

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+ VTFT L+ GLC E  + EA  +F  +   G +PD+ TY  L++G C 
Sbjct: 291 FKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCL 350

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +FE M          C P A +Y+ + +G CK   +D+AK L  +M  + +
Sbjct: 351 QRLMNEAKKVFEIMIRKG------CAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKAL 404

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPD VTY++L++G C      EA  LF EM   G  PN+VT+ ++++  CK+G +DEA +
Sbjct: 405 NPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALK 464

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M +  + P+   Y  L++G  + G++  AKELF  +  +G   D+ +Y ++I G  
Sbjct: 465 LLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLL 524

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    + A  L+ +M   G  P   +YN
Sbjct: 525 KEGLSDEAYDLFRKMEDDGFLPNSCSYN 552



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 134/262 (51%), Gaps = 6/262 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L       +  +    +F+ +   G  P  ++YNILIN +CK  R+     +
Sbjct: 336 PDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSL 395

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD VT+++L++GLC   R  EA  LF ++ ++G  P++ TY  L++G C+
Sbjct: 396 LAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCK 455

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            GH   AL L + M     E      P+ + Y+ + +G+   G ++ AKELF K+  +  
Sbjct: 456 HGHLDEALKLLKSMKEKKLE------PNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGT 509

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ TYT +I+G       +EA  LF +M D G  PN  ++NV++    +N     A R
Sbjct: 510 RPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIR 569

Query: 255 LLELMIQIGVRPDASVYNTLMD 276
           L++ M+      + S +  L+D
Sbjct: 570 LIDEMVGKRFSVNLSTFQMLLD 591



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD A   F +M   N  P VV +   +  F     ++    L  +M    V  NV + N+
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N LC+   +D +  +L  M ++G+ PDA  +N L++G C  G++  A ELF  M   G
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +V SY  +ING CK      A+ ++ +M   G +P VVTY+T
Sbjct: 194 HEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYST 238


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 151/359 (42%), Positives = 210/359 (58%), Gaps = 26/359 (7%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ MLRM P PP    FN L   +AK KH+ T+LSL  +++S G+ P++YT +ILIN FC
Sbjct: 49  FNRMLRMQP-PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFC 107

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV   F VL +IL+    PD  TFT+LI+G+C E +I EA  LF K+   G +PDV 
Sbjct: 108 HLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVV 167

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+ G+T  A+ L   M   N      C+P+   Y+TI D LCK+  V +A 
Sbjct: 168 TYGTLINGLCKVGNTSAAIRLLGSMVQKN------CQPNVFAYNTIIDSLCKDRQVTEAF 221

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+PD+ TY SLI   C   +W     L  EM+D  + P+VV+FN +++ L
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDAL 281

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  +++ MIQ GV P+   Y  LMDG CL   ++ A ++F +M   GCM +V
Sbjct: 282 CKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNV 341

Query: 304 FSYGILINGYCKNKEIEGAL-------------------SLYSEMLSKGIRPTVVTYNT 343
            SY  LINGYCK + I+ A+                    ++  M+ KG  P V++YNT
Sbjct: 342 ISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNT 400



 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 179/342 (52%), Gaps = 13/342 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L     +  V +L   +    + PD+ ++N +++  CK G+V+    V
Sbjct: 234 PDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDV 293

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++++    P+ VT+T+L+ G C  S + EA  +F  +   GC P+V +Y TLING C+
Sbjct: 294 VDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCK 353

Query: 135 TGHTIVA-------------LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
                 A             LN+ E +   +      C P+ I+Y+T+ +G CK   +DK
Sbjct: 354 IQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDK 413

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  LF +M  + + PD VTY++LI G C+     +A  LF EM+     PN+VT+ ++++
Sbjct: 414 AMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLD 473

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCKN  + EA  LL+ +    + PD  V N  +DG C  G +  A++LF ++ S G   
Sbjct: 474 YLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQP 533

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           DV++Y I+ING C+   ++ A  L+ EM   G       YNT
Sbjct: 534 DVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNT 575



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 29/243 (11%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D  + +F  +   G  P++ +YN LIN +CK+ R+     + G + R    PD VT+++L
Sbjct: 377 DEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTL 436

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN- 152
           I GLC   R+ +A ALF ++ A    P++ TY  L++ LC+  +   A+ L + +   N 
Sbjct: 437 IHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNL 496

Query: 153 -----------------GEFGVV-----------CKPDAITYSTITDGLCKEGFVDKAKE 184
                            GE                +PD  TYS + +GLC+ G +D+A +
Sbjct: 497 DPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASK 556

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           LF +M +     +   Y ++ RGF   N+ + A  L  EM+ +G   +  T  + +  L 
Sbjct: 557 LFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLS 616

Query: 245 KNG 247
            +G
Sbjct: 617 DDG 619



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M      P  V +  L+         +    L  +M   G+ PN+ T ++
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  ++++G +PD + + TL+ G C+ G++  A  LF  M   G
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEG 161

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              DV +YG LING CK      A+ L   M+ K  +P V  YNT
Sbjct: 162 FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNT 206


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  290 bits (742), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 144/341 (42%), Positives = 223/341 (65%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ +LR + +PP    FN + G L K+KHY TVL L +++   G+ P+L   NILINCF
Sbjct: 72  LFNRLLRRNTTPPAF-EFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCF 130

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++G +   F V  +IL+  + PD +TFT+LIKGLC + +I +A     K+ A G   D 
Sbjct: 131 CQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQ 190

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y TLI+GLC+ G T  AL+L + + +GN     + +P+ + Y+TI D +CK   V++A
Sbjct: 191 ISYGTLIHGLCKVGETRAALDLLQRV-DGN-----LVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF +M  + I+PDVVTY++LI GFC     N+A  LF +M+ + ++P+V TFN+++N 
Sbjct: 245 FDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNA 304

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK+GKM E   + ++M++ G++P+   YN+LMDG+CL   VN+AK +F +M   G   D
Sbjct: 305 FCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPD 364

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + SY I+ING+CK K+ + A++L+ EM  K I P VVTY++
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405



 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 185/340 (54%), Gaps = 7/340 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+    SP  V    ++ G     K  D +  LF ++    + PD+YT+NIL+N
Sbjct: 245 FDLFSEMISKGISPDVVTYSALISGFCILGKLNDAI-DLFNKMILENIKPDVYTFNILVN 303

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FCK G++  G  V   +++    P+ VT+ SL+ G C    + +A ++F  +   G  P
Sbjct: 304 AFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNP 363

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+ +Y+ +ING C+      A+NLF+EM   N        PD +TYS++ DGL K G + 
Sbjct: 364 DIQSYSIMINGFCKIKKFDEAMNLFKEMHRKN------IIPDVVTYSSLIDGLSKSGRIS 417

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A +L  +M D  + P + TY S++   C  +  ++A  L  ++ D+G+QPN+ T+++++
Sbjct: 418 YALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILI 477

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LC++GK+++A ++ E ++  G   +   Y  ++ GFC+ G  N A  L   ME NGC+
Sbjct: 478 KGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCI 537

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            D  +Y I+I    K  E + A  L  EM+++G+RP  + 
Sbjct: 538 PDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIA 577



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 175/323 (54%), Gaps = 6/323 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K       L L +R++   + P++  YN +I+  CK+  V+  F +   +
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +PD VT+++LI G C   ++ +A  LF K+     KPDV+T+  L+N  C+ G  
Sbjct: 252 ISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
                +F+ M           KP+ +TY+++ DG C    V+KAK +F  M    +NPD+
Sbjct: 312 KEGKTVFDMMMKQG------IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDI 365

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            +Y+ +I GFC    ++EA  LF EM  + + P+VVT++ +++ L K+G++  A +L++ 
Sbjct: 366 QSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQ 425

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M   GV P    YN+++D  C   +V++A  L   ++  G   ++++Y ILI G C++ +
Sbjct: 426 MHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGK 485

Query: 319 IEGALSLYSEMLSKGIRPTVVTY 341
           +E A  ++  +L KG    V TY
Sbjct: 486 LEDARKVFEGLLVKGHNLNVDTY 508



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 173/327 (52%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   + K K  +    LF  + S G+ PD+ TY+ LI+ FC +G+++    +
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDL 282

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     PD  TF  L+   C + ++ E   +F  +   G KP+  TY +L++G C 
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCL 342

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  MA G    GV   PD  +YS + +G CK    D+A  LF +M  +NI
Sbjct: 343 VKEVNKAKSIFNTMAQG----GV--NPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY+SLI G   +   + A  L  +M D+GV P + T+N I++ LCK  ++D+A  
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIA 456

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  +   G++P+   Y+ L+ G C +G++  A+++F  +   G   +V +Y I+I G+C
Sbjct: 457 LLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFC 516

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
                  AL+L S+M   G  P   TY
Sbjct: 517 VEGLFNEALALLSKMEDNGCIPDAKTY 543



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 90/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           K + I+YS+ +        VD A  LF ++   N  P    +  ++     +  ++    
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  +M  +G++PN+V  N+++N  C+ G +  A  +   ++++G  PD   + TL+ G C
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLC 166

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
           L G++ +A      + + G   D  SYG LI+G CK  E   AL L   +    ++P VV
Sbjct: 167 LKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVV 226

Query: 340 TYNT 343
            YNT
Sbjct: 227 MYNT 230


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/340 (43%), Positives = 205/340 (60%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML MHP PP    F  L   +AK KHY TVLSL  +++S G+ PD+YT NILIN FC
Sbjct: 100 FNRMLHMHP-PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFC 158

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + R+   F VL ++L+    PD  TF +LI+GLC E +I EA  LF K    G +PDV 
Sbjct: 159 HLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVV 218

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TL+NGLC+ G+T  A+ L   M   N      C+P+ I Y+TI D LCK+  V +A 
Sbjct: 219 TYGTLMNGLCKVGNTSAAIRLLRSMVQKN------CRPNVIAYNTIIDSLCKDRQVTEAF 272

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+PD+ TY SLI   C   +W     L  EM++  + PNVV F+ +++ L
Sbjct: 273 NLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL 332

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G +  A  ++++MI+ GV PD   Y  LMDG CL   ++ A ++F +M   GC+ +V
Sbjct: 333 CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNV 392

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY ILINGYC+ + ++ A+ L  +M  +G+    VTYNT
Sbjct: 393 RSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 432



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M   +  P  V +T L+        ++    L  +M   G+ P+V T N+
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 152

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  ++++G +PD + +NTL+ G C+ G++  A  LF      G
Sbjct: 153 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 212

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              DV +YG L+NG CK      A+ L   M+ K  RP V+ YNT
Sbjct: 213 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNT 257



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI---GVRP 266
           + N  ++A   F  M+     P+ V F  ++  +    KM   S +L L  Q+   G+ P
Sbjct: 89  HFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSI---AKMKHYSTVLSLSTQMDSFGIPP 145

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D    N L++ FC   R+  A  +   +   GC  D  ++  LI G C   +I  AL L+
Sbjct: 146 DVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLF 205

Query: 327 SEMLSKGIRPTVVTYNT 343
            + + +G +P VVTY T
Sbjct: 206 DKTIGEGFQPDVVTYGT 222


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/349 (42%), Positives = 212/349 (60%), Gaps = 16/349 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNI---------L 58
           +R+    P   +FNIL  CL   K  +  L+    +   G  PD+ TY+I         L
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           I+  CK G+V     +L  +++     D VT+++LIKGLC E RI EA  LF  ++  GC
Sbjct: 61  IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC 120

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           +PD  TY TL+ GLC+TG+  +AL L +EM N  G +G+ CKP  I+YS I DGLCK+  
Sbjct: 121 RPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRR 180

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
            D+A+ELF +MK + + PDV++YTSLI GFC++  W +AKCLF EM+D G+QP+V T  V
Sbjct: 181 EDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGV 240

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++  CK GK+ EA+ LLE+M+  G   D   Y+TL+ G C+  R++ A +LF+SM+  G
Sbjct: 241 LIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLG 300

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLS-------KGIRPTVVT 340
           C  D  +YG L+ G C+  +I  AL L+ EML+       K IRP V T
Sbjct: 301 CRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTT 349



 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 140/334 (41%), Positives = 210/334 (62%), Gaps = 6/334 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+  L      +  ++    LF  +  +G+ PD+ T ++LI+  CK G+V     +
Sbjct: 491 PDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKL 550

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++     D VT T+L+KGLC + RI +A  LF K++  GC P+V T  TL+ GLC+
Sbjct: 551 LEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQ 610

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+  +AL L + M +    +G+ CKP+AI+YS I DGLCK G  D+A+ELF +MK   +
Sbjct: 611 SGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGV 670

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV++YTSLI GFC +  W +AK LF EM+D GVQP+V TF+V+++ LCK GK+ EA+ 
Sbjct: 671 IPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANE 730

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE+MIQ G  P+   Y TL+ G C+  R++ A +LF+ M+  GC+ DV +YG L+ G C
Sbjct: 731 LLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLC 790

Query: 315 KNKEIEGALSLYSEMLSK------GIRPTVVTYN 342
           +   I+ AL L+ +MLS         +P V++Y+
Sbjct: 791 QTGNIKTALELHKKMLSDTGQYGTNFKPDVISYS 824



 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/341 (41%), Positives = 210/341 (61%), Gaps = 13/341 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKR-LNSIGLF------PDLYTYNILINCFCKMGR 67
           P   ++  L   L +    +  L L +  LN    +      PD+ T ++LI+  CK G+
Sbjct: 303 PDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGK 362

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +L  +++     D VT+++LIKGLC E RI EA  LF  ++  GC+PD  TY T
Sbjct: 363 VIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGT 422

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L+ GLC+TG+  +AL L +EM N  G +G+ CKP  I+YS I DGLCK+   D+A+ELF 
Sbjct: 423 LMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFE 482

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +MK + I PDV++YT+LI GFC +  W +AKCLF EM+D G+QP+V T +V+++ LCK G
Sbjct: 483 EMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKG 542

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+ EA++LLE++IQ G   D     TL+ G C+  R+++A +LF+ M+  GCM +V +  
Sbjct: 543 KVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCA 602

Query: 308 ILINGYCKNKEIEGALSLYSEMLSK----GI--RPTVVTYN 342
            L+ G C++  I+ AL L+  MLS     GI  +P  ++Y+
Sbjct: 603 TLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYS 643



 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 153/238 (64%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+  L     ++  +     LF  +  IG+ PD+ T+++LI+  CK G+V     +
Sbjct: 672 PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANEL 731

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    P+ VT+T+L+KGLC   RI EA  LF K++  GC PDV TY TL+ GLC+
Sbjct: 732 LEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQ 791

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG+   AL L ++M +  G++G   KPD I+YS I DGLCK G  D+A+ELF +MK   +
Sbjct: 792 TGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGV 851

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            P+V++YTSLI GFC +    +AK LF EM+DQGVQ N VT++V+++  CK G++D+A
Sbjct: 852 IPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 909



 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 186/371 (50%), Gaps = 42/371 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+  L      +  ++    LF  +  +G+ PD+ T  +LI+ FCK G+V     +
Sbjct: 198 PDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANEL 257

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++      D VT+++LIKGLC + RI EA  LF  ++  GC+PD   Y TL+ GLC+
Sbjct: 258 LEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQ 317

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC-KPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           TG   +AL+L +EM N   ++G+ C +PD  T S + D LCKEG V +A EL   M    
Sbjct: 318 TGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRG 377

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF----------------- 236
              D+VTY++LI+G C  +  +EA  LF+ M   G +P+ +T+                 
Sbjct: 378 CILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIAL 437

Query: 237 ------------------------NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
                                   ++I++ LCK+ + DEA  L E M   G+ PD   Y 
Sbjct: 438 QLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYT 497

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           TL+ GFCL+G+  +AK LF  M   G   DV +  +LI+  CK  ++  A  L   ++ +
Sbjct: 498 TLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQR 557

Query: 333 GIRPTVVTYNT 343
           G    VVT  T
Sbjct: 558 GCILDVVTCTT 568



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/312 (35%), Positives = 166/312 (53%), Gaps = 21/312 (6%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFT---------SLIKGL 97
           GLFPD +T+NILINC C + RV+ G   +  I+R  + PD VT++          LI  L
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDIL 64

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C E +++EA  L   +   GC  D+ TY+TLI GLC       A  LF  M        +
Sbjct: 65  CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQK------L 118

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE------NINPDVVTYTSLIRGFCYA 211
            C+PDAITY T+  GLC+ G ++ A +L  +M ++         P +++Y+ +I G C  
Sbjct: 119 GCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 178

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
              +EA+ LF EM  QG+ P+V+++  +++  C +GK ++A  L   M+ +G++PD +  
Sbjct: 179 RREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTS 238

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             L+D FC  G+V  A EL   M   GC+ D+ +Y  LI G C    I  A  L+  M  
Sbjct: 239 GVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKK 298

Query: 332 KGIRPTVVTYNT 343
            G RP  + Y T
Sbjct: 299 LGCRPDAIAYGT 310



 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 171/335 (51%), Gaps = 12/335 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S++I+   L K++  D    LF+ + + G+ PD+ +Y  LI+ FC  G+      +
Sbjct: 456 PTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 515

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     PD  T + LI  LC + +++EA  L   +   GC  DV T TTL+ GLC 
Sbjct: 516 FNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCM 575

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-- 192
                 A  LF +M        + C P+ +T +T+  GLC+ G +  A EL   M  +  
Sbjct: 576 KHRISKATQLFLKMQK------LGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTS 629

Query: 193 ----NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
               N  P+ ++Y+ +I G C     +EA+ LF EM   GV P+V+++  +++  C++GK
Sbjct: 630 PYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGK 689

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
             +A  L   M+ IGV+PD + ++ L+D  C  G+V  A EL   M   GC+ +  +Y  
Sbjct: 690 WKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTT 749

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L+ G C N  I  A  L+ +M   G  P VVTY T
Sbjct: 750 LVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGT 784



 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 179/347 (51%), Gaps = 25/347 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKR-LNSIGLF-----PDLYTYNILINCFCKMGRV 68
           P   ++  L   L +  + +  L L +  LN  G +     P L +Y+I+I+  CK  R 
Sbjct: 122 PDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRE 181

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +   +      PD +++TSLI G C   +  +A  LF ++   G +PDV T   L
Sbjct: 182 DEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVL 241

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I+  C+ G  I A  L E M +        C  D +TYST+  GLC +  + +A +LF+ 
Sbjct: 242 IDMFCKEGKVIEANELLEVMVHRG------CILDIVTYSTLIKGLCMKHRISEATQLFMS 295

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ-------PNVVTFNVIMN 241
           MK     PD + Y +L++G C     N A  L  EM++   Q       P+V T +++++
Sbjct: 296 MKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLID 355

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK GK+ EA+ LLE+MIQ G   D   Y+TL+ G C+  R++ A  LF+SM+  GC  
Sbjct: 356 ILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRP 415

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSK----GI--RPTVVTYN 342
           D  +YG L+ G C+   I  AL L+ EML+     GI  +PT+++Y+
Sbjct: 416 DAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYS 462



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 169/321 (52%), Gaps = 18/321 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNS------IGLFPDLYTYNILINCFCKMGRV 68
           P V +   L   L ++ +    L L K + S      I   P+  +Y+I+I+  CK GR 
Sbjct: 596 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRE 655

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +   +      PD +++TSLI G C   +  +A  LF ++   G +PDV T++ L
Sbjct: 656 DEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVL 715

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I+ LC+ G  I A  L E M          C P+ +TY+T+  GLC    + +A +LF+K
Sbjct: 716 IDMLCKEGKVIEANELLEVMIQRG------CIPNTVTYTTLVKGLCMNDRISEATQLFMK 769

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ------PNVVTFNVIMNE 242
           M+     PDVVTY +L++G C   +   A  L  +M+    Q      P+V+++++I++ 
Sbjct: 770 MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDG 829

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK+G+ DEA  L + M  +GV P+   Y +L+ GFC +G++  AK LF  M   G   +
Sbjct: 830 LCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLN 889

Query: 303 VFSYGILINGYCKNKEIEGAL 323
             +Y ++I+G+CK  +I+ AL
Sbjct: 890 AVTYSVMIHGFCKEGQIDKAL 910



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 93/169 (55%), Gaps = 15/169 (8%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV---------I 239
           M+   + PD  T+  LI   C     NE       +M +G  P++VT+++         +
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LCK GK+ EA+ LLE+MIQ G   D   Y+TL+ G C+  R++ A  LF+SM+  GC
Sbjct: 61  IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC 120

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSK----GI--RPTVVTYN 342
             D  +YG L+ G C+   I  AL L+ EML+     GI  +PT+++Y+
Sbjct: 121 RPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYS 169


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 147/340 (43%), Positives = 205/340 (60%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML MHP PP    F  L   +AK KHY TVLSL  +++S G+ PD+YT NILIN FC
Sbjct: 138 FNRMLHMHP-PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFC 196

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + R+   F VL ++L+    PD  TF +LI+GLC E +I EA  LF K    G +PDV 
Sbjct: 197 HLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVV 256

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TL+NGLC+ G+T  A+ L   M   N      C+P+ I Y+TI D LCK+  V +A 
Sbjct: 257 TYGTLMNGLCKVGNTSAAIRLLRSMVQKN------CRPNVIAYNTIIDSLCKDRQVTEAF 310

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+PD+ TY SLI   C   +W     L  EM++  + PNVV F+ +++ L
Sbjct: 311 NLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL 370

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G +  A  ++++MI+ GV PD   Y  LMDG CL   ++ A ++F +M   GC+ +V
Sbjct: 371 CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNV 430

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY ILINGYC+ + ++ A+ L  +M  +G+    VTYNT
Sbjct: 431 RSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 470



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K++      +LF  + + G+ PD++TYN LI+  C +        +
Sbjct: 288 PNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTL 347

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ S   P+ V F++++  LC E  I  A  +   +   G +PDV TYT L++G C 
Sbjct: 348 LNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCL 407

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +F+ M +        C P+  +Y+ + +G C+   +DKA  L  +M  + +
Sbjct: 408 RSEMDEAVKVFDTMVHKG------CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL 461

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D VTY +LI G C+      A  LF EM+  G  P++VT+ ++++ LCKN  + EA  
Sbjct: 462 IADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMV 521

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ +    +  D  VYN  +DG C  G +  A++LF ++ S G   DV +Y I+I+G C
Sbjct: 522 LLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLC 581

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   ++ A  L+ +M   G       YNT
Sbjct: 582 KRGLLDEANKLFRKMDENGCSRDGCIYNT 610



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 126/256 (49%), Gaps = 8/256 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+      P V S+NIL     + +  D  + L ++++  GL  D  TYN LI+  
Sbjct: 417 VFDTMVH-KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGL 475

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +GR+     +   ++ S   PD VT+  L+  LC    + EA  L   +       D+
Sbjct: 476 CHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADI 535

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y   I+G+CR G    A +LF  +++         +PD  TY+ +  GLCK G +D+A
Sbjct: 536 LVYNIAIDGMCRAGELEAARDLFSNLSSKG------LQPDVRTYNIMIHGLCKRGLLDEA 589

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF KM +   + D   Y ++IRGF  +N+   A  L  EM+ +G   +V T  +I+  
Sbjct: 590 NKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEM 649

Query: 243 LCKNGKMDEASRLLEL 258
           L  +G +D++   L L
Sbjct: 650 LSDDG-LDQSFERLRL 664



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 134/274 (48%), Gaps = 7/274 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M++     P V ++  L          D  + +F  +   G  P++ +YNILIN +
Sbjct: 382 VVDMMIK-RGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 440

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++ R+     +L ++       D VT+ +LI GLC   R+  A ALF ++ A G  PD+
Sbjct: 441 CQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDL 500

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  L++ LC+  H   A+ L + +   N         D + Y+   DG+C+ G ++ A
Sbjct: 501 VTYRILLDYLCKNHHLAEAMVLLKAIEGSN------LDADILVYNIAIDGMCRAGELEAA 554

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++LF  +  + + PDV TY  +I G C     +EA  LF +M + G   +   +N I+  
Sbjct: 555 RDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRG 614

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
             ++ +   A++LL+ M+  G   D S    +++
Sbjct: 615 FLRSNETFGATQLLQEMLAEGFSADVSTTTLIVE 648



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M   +  P  V +T L+        ++    L  +M   G+ P+V T N+
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 190

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  ++++G +PD + +NTL+ G C+ G++  A  LF      G
Sbjct: 191 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 250

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              DV +YG L+NG CK      A+ L   M+ K  RP V+ YNT
Sbjct: 251 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNT 295



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI---GVRP 266
           + N  ++A   F  M+     P+ V F  ++  +    KM   S +L L  Q+   G+ P
Sbjct: 127 HFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSI---AKMKHYSTVLSLSTQMDSFGIPP 183

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D    N L++ FC   R+  A  +   +   GC  D  ++  LI G C   +I  AL L+
Sbjct: 184 DVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLF 243

Query: 327 SEMLSKGIRPTVVTYNT 343
            + + +G +P VVTY T
Sbjct: 244 DKTIGEGFQPDVVTYGT 260


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 146/340 (42%), Positives = 207/340 (60%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M P PP V  F  +   +A  KHY TVLSL K+++S+G+  D+YT  I+IN FC
Sbjct: 62  FNRMLHMQP-PPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFC 120

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV  GF VL +I +    PD  TFT+LI+GLC E +I EA  LF K+   G +P+  
Sbjct: 121 HLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGV 180

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLI+GLC+ G++  A+ L   M   N      C+P+ ITY+TI D L K+  V++A 
Sbjct: 181 TYGTLIHGLCKVGNSRAAIRLLRSMVQKN------CEPNVITYNTIIDCLFKDRQVNEAL 234

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +F +M  + I+P+V TY S+I G C  ++W     L  EM+D  + PNVV F  +++ L
Sbjct: 235 NIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDAL 294

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G +  A  ++++MIQ GV PD   Y  LMDG CL   ++ A ++F +M   GC  +V
Sbjct: 295 CKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNV 354

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  LINGYCK + I+ A+ L+ EM  + + P +VTYNT
Sbjct: 355 ISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNT 394



 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 175/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +  CL K++  +  L++F  + + G+ P++ TYN +I+  CK         +
Sbjct: 212 PNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATL 271

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++ S   P+ V FT+L+  LC E  +  A  +   +   G +PDV TYT L++G C 
Sbjct: 272 MNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCL 331

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F+ M          C P+ I+YST+ +G CK   +DKA  LF +M    +
Sbjct: 332 RSEMDEADKVFDTMVRKG------CAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQREL 385

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++VTY +LI G C+     +A  LF EM+  G  P++VT+ ++++ LCK   +D+A  
Sbjct: 386 VPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMA 445

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+ +    + PD   YN ++DG C  G +  A +LF S+ S G   DV++Y I+ING C
Sbjct: 446 MLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLC 505

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               +  A  L+ EM + G  P   TYN
Sbjct: 506 LQGLLAEATKLFREMNTDGCSPDDCTYN 533



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 164/319 (51%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K   +  V +L   +    + P++  +  L++  CK G V+    V
Sbjct: 247 PNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDV 306

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +++    PD VT+T+L+ G C  S + EA  +F  +   GC P+V +Y+TLING C+
Sbjct: 307 VDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCK 366

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ LFEEM            P+ +TY+T+  GLC  G +  A  LF +M     
Sbjct: 367 IQRIDKAMYLFEEMCQRE------LVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQ 420

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY  L+   C     ++A  +   +    + P++ ++N++++ +C+ G+++ A  
Sbjct: 421 IPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGD 480

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G+ PD   Y  +++G CL G +  A +LF  M ++GC  D  +Y ++  G+ 
Sbjct: 481 LFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFL 540

Query: 315 KNKEIEGALSLYSEMLSKG 333
           +N E   A+ L  EML +G
Sbjct: 541 RNNETLSAIQLLQEMLGRG 559



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 136/277 (49%), Gaps = 6/277 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L          D    +F  +   G  P++ +Y+ LIN +CK+ R+     +
Sbjct: 317 PDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYL 376

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+ VT+ +LI GLC   R+ +A ALF ++ A G  PD+ TY  L++ LC+
Sbjct: 377 FEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCK 436

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T H   A+ + + +   N        PD  +Y+ + DG+C+ G ++ A +LF  +  + +
Sbjct: 437 TRHLDQAMAMLKAIEGSN------LAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGL 490

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDV TYT +I G C      EA  LF EM   G  P+  T+N+I     +N +   A +
Sbjct: 491 HPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQ 550

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           LL+ M+  G   DAS    +++     G     K++ 
Sbjct: 551 LLQEMLGRGFSADASTITLIVEMLSDDGLDQSVKQIL 587



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 126/259 (48%), Gaps = 7/259 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R     P V S++ L     K +  D  + LF+ +    L P++ TYN LI+  
Sbjct: 341 VFDTMVR-KGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGL 399

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +GR+     +   ++ S   PD VT+  L+  LC    + +A A+   +      PD+
Sbjct: 400 CHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDI 459

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y  +I+G+CR G    A +LF  +++          PD  TY+ + +GLC +G + +A
Sbjct: 460 QSYNIVIDGMCRVGELEAAGDLFSSLSSKG------LHPDVWTYTIMINGLCLQGLLAEA 513

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF +M  +  +PD  TY  + RGF   N+   A  L  EM+ +G   +  T  +I+  
Sbjct: 514 TKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEM 573

Query: 243 LCKNGKMDEASRLLELMIQ 261
           L  +G      ++L   +Q
Sbjct: 574 LSDDGLDQSVKQILHEFVQ 592



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D+A   F +M      P VV +  ++        ++    L  +M   G+  +V T  +
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAI 114

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++D    +L  + ++G +PD + + TL+ G C+ G++  A  LF  M   G
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG 174

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +  +YG LI+G CK      A+ L   M+ K   P V+TYNT
Sbjct: 175 FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNT 219



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%)

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N  +EA   F  M+     P+VV F  I+  +           L + M  +G+  D    
Sbjct: 53  NTIDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTL 112

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             +++ FC   RV+    +   +   G   D  ++  LI G C   +I  AL L+ +M+ 
Sbjct: 113 AIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVG 172

Query: 332 KGIRPTVVTYNT 343
           +G +P  VTY T
Sbjct: 173 EGFQPNGVTYGT 184


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 139/340 (40%), Positives = 205/340 (60%), Gaps = 6/340 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F++ML   P P  +    +L   +   ++Y  V+SL K++   GL PD+YT +ILI+CF 
Sbjct: 82  FNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFS 141

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV   F V  ++++    PDAVTF +LI GLC   +  +A   F    A GC+P V+
Sbjct: 142 HLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVY 201

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TYTT+INGLC+ G T  A  LF++M          C+P+ +TY+ + D LCK+  V++A 
Sbjct: 202 TYTTIINGLCKIGETTAAAGLFKKMEEAG------CQPNVVTYNILIDSLCKDKLVNEAL 255

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           ++F  MK + I+PD+ TY SLI+G C    W EA  L  EM    + PN+ TFNV+++ +
Sbjct: 256 DIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAI 315

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  + + M ++GV PD   Y++LM G+ L   +  A++LF +M + GC  D 
Sbjct: 316 CKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDA 375

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           FSY ILI GYCK K I+ A  L++EM+ +G+ P  V YNT
Sbjct: 376 FSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNT 415



 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 176/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L K         LFK++   G  P++ TYNILI+  CK   V+    +
Sbjct: 198 PTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDI 257

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +PD  T+ SLI+GLC   R  EA+AL  ++ +    P++FT+  L++ +C+
Sbjct: 258 FSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICK 317

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F+ M     E GV  +PD +TYS++  G      + +A++LF  M  +  
Sbjct: 318 EGKVSEAQGVFKTMT----EMGV--EPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGC 371

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  +Y  LI+G+C A   +EAK LF EM+ QG+ P+ V +N +++ LC+ G++ EA  
Sbjct: 372 KPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQD 431

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M   G  PD   Y+ L+DGFC  G + +A  LF  M+S     D+  Y ILI+  C
Sbjct: 432 LFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMC 491

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   ++ A  L+SE+  +G+ P V  Y T
Sbjct: 492 KFGNLKDARKLFSELFVQGLLPNVQIYTT 520



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 173/331 (52%), Gaps = 7/331 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF YM     SP  + ++N L   L   + +    +L   + S+ + P+++T+N+L++  
Sbjct: 257 IFSYMKAKRISPD-IFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAI 315

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G+VS    V   +      PD VT++SL+ G      I+EA  LF  +   GCKPD 
Sbjct: 316 CKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDA 375

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           F+Y  LI G C+      A  LF EM +          PD + Y+T+  GLC+ G + +A
Sbjct: 376 FSYNILIKGYCKAKRIDEAKQLFNEMIHQG------LTPDNVNYNTLIHGLCQLGRLREA 429

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++LF  M      PD+ TY+ L+ GFC      +A  LF  M    ++P++  +N++++ 
Sbjct: 430 QDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDA 489

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           +CK G + +A +L   +   G+ P+  +Y T+++  C  G ++ A E F +ME +GC  D
Sbjct: 490 MCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPD 549

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
            FSY ++I G+ + K+   A  L  EM  +G
Sbjct: 550 EFSYNVIIRGFLQYKDESRAAQLIGEMRDRG 580



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 167/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++NIL   L K+K  +  L +F  + +  + PD++TYN LI   C   R      +
Sbjct: 233 PNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASAL 292

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+  TF  L+  +C E ++ EA  +F  +   G +PDV TY++L+ G   
Sbjct: 293 LNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSL 352

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A  LF+ M          CKPDA +Y+ +  G CK   +D+AK+LF +M  + +
Sbjct: 353 RMEIVEARKLFDAMITKG------CKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGL 406

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD V Y +LI G C      EA+ LF  M   G  P++ T++++++  CK G + +A R
Sbjct: 407 TPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFR 466

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L  +M    ++PD ++YN L+D  C  G +  A++LF  +   G + +V  Y  +IN  C
Sbjct: 467 LFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLC 526

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ AL  +  M   G  P   +YN
Sbjct: 527 KEGLLDEALEAFRNMEGDGCPPDEFSYN 554



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 130/266 (48%), Gaps = 7/266 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M  M   P  V   ++++G   + +  +    LF  + + G  PD ++YNILI  +
Sbjct: 327 VFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVE-ARKLFDAMITKGCKPDAFSYNILIKGY 385

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  R+     +   ++    TPD V + +LI GLC   R+ EA  LF  + + G  PD+
Sbjct: 386 CKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDL 445

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FTY+ L++G C+ G+   A  LF  M +         KPD   Y+ + D +CK G +  A
Sbjct: 446 FTYSMLLDGFCKEGYLGKAFRLFRVMQS------TYLKPDIAMYNILIDAMCKFGNLKDA 499

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++LF ++  + + P+V  YT++I   C     +EA   F  M   G  P+  ++NVI+  
Sbjct: 500 RKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRG 559

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDA 268
             +      A++L+  M   G   +A
Sbjct: 560 FLQYKDESRAAQLIGEMRDRGFVAEA 585



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 9/201 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M+    +P  V ++N L   L +         LFK ++S G  PDL+TY++L++ F
Sbjct: 397 LFNEMIHQGLTPDNV-NYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGF 455

Query: 63  CKMGRVSPGFVVLGRILRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           CK G +   F +  R+++S +  PD   +  LI  +C    + +A  LF++L   G  P+
Sbjct: 456 CKEGYLGKAFRLF-RVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPN 514

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V  YTT+IN LC+ G    AL  F  M  G+G     C PD  +Y+ I  G  +     +
Sbjct: 515 VQIYTTIINNLCKEGLLDEALEAFRNM-EGDG-----CPPDEFSYNVIIRGFLQYKDESR 568

Query: 182 AKELFLKMKDENINPDVVTYT 202
           A +L  +M+D     +  T T
Sbjct: 569 AAQLIGEMRDRGFVAEAGTTT 589


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  287 bits (734), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 139/329 (42%), Positives = 209/329 (63%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           PP+  F  + G L K KHY TV+SL K++ + G+ PDL T +ILINCFC +G+++  F V
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG+IL+  + P+ +   +L+KGLC +  + ++     K+ A G + D  +Y  L+NGLC+
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A+ L   + + +       +PD + YSTI DGLCK+  VD+A +L+ +M    I
Sbjct: 128 IGETRCAIKLLRTIEDRS------TRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGI 181

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+TYT+LI GFC A    EA  L  EM+ + + PN+ T+N +++ LCK GK+ E+  
Sbjct: 182 FPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKN 241

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL +M + GV+PD  +Y+ LMDG+CL G V +AK++F+ M   G   DV+SY I+ING C
Sbjct: 242 LLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLC 301

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K K ++ A++L  EML K + P  VTY++
Sbjct: 302 KGKRVDEAMNLLREMLHKNMIPDTVTYSS 330



 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 181/341 (53%), Gaps = 7/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +   +L++   P  +   N L   L         L    ++ + G   D  +Y IL+N
Sbjct: 65  FSVLGKILKLGYQPNTII-LNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLN 123

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+G       +L  I      PD V ++++I GLC +  + EA  L++++ A G  P
Sbjct: 124 GLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFP 183

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV TYTTLI G C  G  + A  L  EM   N        P+  TY+T+ D LCKEG V 
Sbjct: 184 DVITYTTLICGFCLAGQLMEAFGLLNEMILKN------INPNIYTYNTLIDTLCKEGKVK 237

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           ++K L   M  + + PDVV Y+ L+ G+C   +  +AK +F+ M+  GV P+V ++N+I+
Sbjct: 238 ESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIII 297

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N LCK  ++DEA  LL  M+   + PD   Y++L+DG C  GR+    +L   M   G  
Sbjct: 298 NGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQP 357

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++ +Y  L++G CKN+ ++ A++L+ +M  +GI+P   TY
Sbjct: 358 ANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTY 398



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 173/327 (52%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+K  D    L+  +N+ G+FPD+ TY  LI  FC  G++   F +
Sbjct: 148 PDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGL 207

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+  T+ +LI  LC E ++ E+  L   +   G KPDV  Y+ L++G C 
Sbjct: 208 LNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCL 267

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F  M     + GV   PD  +Y+ I +GLCK   VD+A  L  +M  +N+
Sbjct: 268 VGEVQKAKQIFLVMV----QTGV--NPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNM 321

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY+SLI G C          L  EM  +G   N+VT+N +++ LCKN  +D+A  
Sbjct: 322 IPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIA 381

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M + G++P+   Y  L+DG C  GR+ + + LF  +   G   DV++Y ++I+G C
Sbjct: 382 LFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLC 441

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K    + AL++ S+M   G  P  VT+
Sbjct: 442 KEGMFDEALAMKSKMEDNGCIPNAVTF 468



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 3   IFDYMLRMHP--SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           I D    MH    P  + ++N L   L KN++ D  ++LF ++   G+ P+ YTY  LI+
Sbjct: 344 ILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALID 403

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK GR+  G  +   +L   +  D  T+T +I GLC E    EA A+ +K+   GC P
Sbjct: 404 GLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIP 463

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEM 148
           +  T+  +I  L        A  L  EM
Sbjct: 464 NAVTFEIIIRSLLEKDENDKAEKLLHEM 491


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 146/340 (42%), Positives = 207/340 (60%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  MLRM+P P  V  F    G +AK K Y TV+SL  +++  G+  ++Y+ NILINC C
Sbjct: 80  FYRMLRMNPRPS-VVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLC 138

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++  V     VLG++ +    PDA+TF +LI G C E  I EA  LF ++   G +PDV 
Sbjct: 139 RLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVI 198

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y+T+INGLC++G+T +AL L  +M          CKP+ + Y+TI D LCK+  V+ A 
Sbjct: 199 SYSTVINGLCKSGNTSMALQLLRKMEEKG------CKPNLVAYTTIIDSLCKDTLVNDAM 252

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L  +M D  I PDVVTY++++ GFC     NEA  LF EM+ + V PN VTF ++++ L
Sbjct: 253 DLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGL 312

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G + EA  + E M + G  P+A  YN LMDG+CL  +++ A+++   M   GC   V
Sbjct: 313 CKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVV 372

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY ILINGYCK + ++ A SL  EM  K + P  VTY+T
Sbjct: 373 HSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYST 412



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 177/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  +   L K+   +  + L   +   G+ PD+ TY+ +++ FC +G ++   ++
Sbjct: 230 PNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATIL 289

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+ VTFT L+ GLC E  + EA  +F  +   G +P+ +TY  L++G C 
Sbjct: 290 FNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCL 349

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  + + M +        C P   +Y+ + +G CK   +D+AK L ++M ++ +
Sbjct: 350 NNQMDEAQKVLDIMVDKG------CAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKEL 403

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY++L++G C      EA  LF EM   G+ P+++T++ +++ LCK+G +DEA +
Sbjct: 404 TPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALK 463

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M +  + PD  +YN L++G  + G++  AKELF  + ++G    + +Y I+I G  
Sbjct: 464 LLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLL 523

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    + A  L+ +M   G  P   +YN
Sbjct: 524 KEGLSDEAYELFRKMEDDGFLPNSCSYN 551



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 161/329 (48%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +++ +        H +    LF  +    + P+  T+ IL++  CK G VS    
Sbjct: 264 PPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARC 323

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   + +    P+A T+ +L+ G C  +++ EA  +   +   GC P V +Y  LING C
Sbjct: 324 VFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYC 383

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A +L  EM+           PD +TYST+  GLC+ G   +A  LF +M    
Sbjct: 384 KRRRLDEAKSLLVEMSEKE------LTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSG 437

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD++TY++L+ G C     +EA  L   M +  ++P++V +N+++  +   GK++ A 
Sbjct: 438 LLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAK 497

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   +   G++P    Y  ++ G    G  + A ELF  ME +G + +  SY ++I G+
Sbjct: 498 ELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGF 557

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +N++   A+ L  EM+ K       T+ 
Sbjct: 558 LQNQDSSTAIRLIDEMVGKRFSADSSTFQ 586



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 147/297 (49%), Gaps = 6/297 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F IL   L K         +F+ +   G  P+ YTYN L++ +C   ++     V
Sbjct: 300 PNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKV 359

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P   ++  LI G C   R+ EA +L  ++      PD  TY+TL+ GLC+
Sbjct: 360 LDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQ 419

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    ALNLF+EM +     G++  PD +TYST+ DGLCK G +D+A +L   M++  I
Sbjct: 420 VGRPQEALNLFKEMCSS----GLL--PDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKI 473

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+V Y  LI G   A     AK LF ++   G+QP + T+ +++  L K G  DEA  
Sbjct: 474 EPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYE 533

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           L   M   G  P++  YN ++ GF      + A  L   M       D  ++ +L++
Sbjct: 534 LFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 83/165 (50%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M   N  P VV +   +        ++    L  +M   GV  NV + N+
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNI 132

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N LC+   +  A  +L  M ++G++PDA  +NTL++G C+ G +  A  LF  M   G
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRG 192

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              DV SY  +ING CK+     AL L  +M  KG +P +V Y T
Sbjct: 193 HQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTT 237


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 142/341 (41%), Positives = 221/341 (64%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ +LR + +PP    FN + G L K+KHY TVL L +++   G+ P+L   NILINCF
Sbjct: 72  LFNRLLRRNTTPPAF-EFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCF 130

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++G +   F V  +IL+  + PD +TFT+L KGLC + +I +A     K+ A G   D 
Sbjct: 131 CQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQ 190

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y TLI+GLC+ G T  AL+L + + +GN     + +P+ + Y+TI D +CK   V++A
Sbjct: 191 ISYGTLIHGLCKVGETRAALDLLQRV-DGN-----LVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF +M  + I+PDVVTY++LI GFC      +A  LF +M+ + ++P+V TFN+++N 
Sbjct: 245 FDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNA 304

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK+GKM E   + ++M++ G++P+   YN+LMDG+CL   VN+AK +F +M   G   D
Sbjct: 305 FCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPD 364

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + SY I+ING+CK K+ + A++L+ EM  K I P VVTY++
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 181/334 (54%), Gaps = 7/334 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+    SP  V    ++ G     K  D +  LF ++    + PD+YT+NIL+N
Sbjct: 245 FDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAI-DLFNKMILENIKPDVYTFNILVN 303

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FCK G++  G  V   +++    P+ VT+ SL+ G C    + +A ++F  +   G  P
Sbjct: 304 AFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNP 363

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+ +Y+ +ING C+      A+NLF+EM   N        PD +TYS++ DGL K G + 
Sbjct: 364 DIQSYSIMINGFCKIKKFDEAMNLFKEMHRKN------IIPDVVTYSSLIDGLSKSGRIS 417

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A +L  +M D  + P++ TY S++   C  +  ++A  L  +  D+G QP++ T+++++
Sbjct: 418 YALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILI 477

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LC++GK+++A ++ E ++  G   D   Y  ++ GFC+ G  N A  L   ME NGC+
Sbjct: 478 KGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCI 537

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            D  +Y I+I    K  E + A  L  EM+++G+
Sbjct: 538 PDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 571



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 111/327 (33%), Positives = 173/327 (52%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   + K K  +    LF  + S G+ PD+ TY+ LI+ FC +G++     +
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDL 282

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     PD  TF  L+   C + ++ E   +F  +   G KP+  TY +L++G C 
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCL 342

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  MA G    GV   PD  +YS + +G CK    D+A  LF +M  +NI
Sbjct: 343 VKEVNKAKSIFNTMAQG----GV--NPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY+SLI G   +   + A  L  +M D+GV PN+ T+N I++ LCK  ++D+A  
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIA 456

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL      G +PD S Y+ L+ G C +G++  A+++F  +   G   DV++Y I+I G+C
Sbjct: 457 LLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFC 516

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
                  AL+L S+M   G  P   TY
Sbjct: 517 VEGLFNEALALLSKMEDNGCIPDAKTY 543



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 175/323 (54%), Gaps = 6/323 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K       L L +R++   + P++  YN +I+  CK+  V+  F +   +
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +PD VT+++LI G C   ++ +A  LF K+     KPDV+T+  L+N  C+ G  
Sbjct: 252 VSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
                +F+ M           KP+ +TY+++ DG C    V+KAK +F  M    +NPD+
Sbjct: 312 KEGKTVFDMMMKQG------IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDI 365

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            +Y+ +I GFC    ++EA  LF EM  + + P+VVT++ +++ L K+G++  A +L++ 
Sbjct: 366 QSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQ 425

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M   GV P+   YN+++D  C T +V++A  L    +  G   D+ +Y ILI G C++ +
Sbjct: 426 MHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGK 485

Query: 319 IEGALSLYSEMLSKGIRPTVVTY 341
           +E A  ++ ++L KG    V  Y
Sbjct: 486 LEDARKVFEDLLVKGYNLDVYAY 508



 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 179/342 (52%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  +L+M   P  + +F  L   L              ++ ++G   D  +Y  LI+
Sbjct: 140 FSVFAKILKMGYVPDTI-TFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIH 198

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+G       +L R+  +   P+ V + ++I  +C    + EA  LF+++ + G  P
Sbjct: 199 GLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISP 258

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV TY+ LI+G C  G    A++LF +M   N       KPD  T++ + +  CK+G + 
Sbjct: 259 DVVTYSALISGFCILGKLKDAIDLFNKMILEN------IKPDVYTFNILVNAFCKDGKMK 312

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           + K +F  M  + I P+ VTY SL+ G+C   + N+AK +F  M   GV P++ ++++++
Sbjct: 313 EGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMI 372

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N  CK  K DEA  L + M +  + PD   Y++L+DG   +GR++ A +L   M   G  
Sbjct: 373 NGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVP 432

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++ +Y  +++  CK  +++ A++L ++   KG +P + TY+
Sbjct: 433 PNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYS 474



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S++I+     K K +D  ++LFK ++   + PD+ TY+ LI+   K GR+S    +
Sbjct: 363 PDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQL 422

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      P+  T+ S++  LC   ++ +A AL TK +  G +PD+ TY+ LI GLC+
Sbjct: 423 VDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQ 482

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  +FE++             D   Y+ +  G C EG  ++A  L  KM+D   
Sbjct: 483 SGKLEDARKVFEDLLVKGYNL------DVYAYTIMIQGFCVEGLFNEALALLSKMEDNGC 536

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            PD  TY  +I      ++ + A+ L  EM+ +G+  N
Sbjct: 537 IPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           K + I+YS+ +        VD A  LF ++   N  P    +  ++     +  ++    
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  +M  +G++PN+V  N+++N  C+ G +  A  +   ++++G  PD   + TL  G C
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLC 166

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
           L G++ +A      + + G   D  SYG LI+G CK  E   AL L   +    ++P VV
Sbjct: 167 LKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVV 226

Query: 340 TYNT 343
            YNT
Sbjct: 227 MYNT 230


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/340 (43%), Positives = 209/340 (61%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F++M+  +P P  +  F  LF  L + KHY TV+SL K++   G+  D+ +  ILINCFC
Sbjct: 79  FNHMVNTNPLPS-IVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFC 137

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++  V  GF VLG+I++    P+ +TF++LI G C E +I  A  LF  + A G KP+V 
Sbjct: 138 RLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVH 197

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y+ +I GLCR G T   + L E M        V C+PD + Y+TI D LCK+  V++A 
Sbjct: 198 SYSIIIKGLCRVGKTTEVIKLLEHMKV------VGCEPDVVIYNTIVDRLCKDRLVNEAV 251

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +F KMK   I P VVTYTSLI G      W EA  L  EM    + P++V F+V+++ +
Sbjct: 252 HIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIM 311

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G++ EA  +L+ M ++GV PD + YNTLM+G+CL   V  A+++F  M S G M DV
Sbjct: 312 CKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDV 371

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           FS+ IL+NGYCK K I+ A  L+ EM  +G+ P  V+YNT
Sbjct: 372 FSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNT 411



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 177/357 (49%), Gaps = 41/357 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L             + LF  + + G  P++++Y+I+I   C++G+ +    +
Sbjct: 159 PNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKL 218

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD V + +++  LC +  + EA  +F K++  G  P V TYT+LI+GL  
Sbjct: 219 LEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRN 278

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  EM  GN        PD + +S + D +CKEG V +A+ +   M +  +
Sbjct: 279 LGRWKEAFGLLNEMKGGN------IMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGV 332

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TY +L+ G+C   +  EA+ +F  M+ +G  P+V +F++++N  CK  ++DEA +
Sbjct: 333 EPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQ 392

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG-------------CMR 301
           L + M   G+ PD   YNTL+ G C   R   A+ELF  M SNG             C+ 
Sbjct: 393 LFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLS 452

Query: 302 ----------------------DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
                                 D+ +Y I+I+G CK  + + A  L++E+  KG++P
Sbjct: 453 KQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQP 509



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 162/323 (50%), Gaps = 6/323 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L K++  +  + +F ++   G+ P + TY  LI+    +GR    F +
Sbjct: 229 PDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGL 288

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD V F+ LI  +C E  + EA  +   +   G +PDV TY TL+NG C 
Sbjct: 289 LNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCL 348

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A  +FE M +  G       PD  ++S + +G CK   +D+AK+LF +M    +
Sbjct: 349 RMEVVEARKVFEVMIS-KGRM-----PDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGL 402

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD V+Y +LI G C A    EA+ LF +M   G  PN+VT++++++ L K G +D+A  
Sbjct: 403 IPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMG 462

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M   G++PD   YN ++DG C  G+   A+ELF  +   G   + +     I+G C
Sbjct: 463 LFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVC 522

Query: 315 KNKEIEGALSLYSEMLSKGIRPT 337
           K   ++ A   + +M      P 
Sbjct: 523 KGGLLDEAHKAFRQMEKDDCSPA 545



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           ++ A   F  M + N  P +V +  L         +     L  +M   G+  +V++  +
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C+   +D    +L  +I++G+ P+   ++TL++GFC+ G++ RA ELF  M + G
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +V SY I+I G C+  +    + L   M   G  P VV YNT
Sbjct: 192 YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNT 236



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 10  MHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           MH +  PP + +++IL  CL+K  + D  + LF+ + + GL PDL TYNI+I+  CK G+
Sbjct: 432 MHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGK 491

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
                 +   +      P+    T  I G+C    + EA   F ++    C P
Sbjct: 492 FKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSP 544


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 145/340 (42%), Positives = 209/340 (61%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M+RM+P P  V  F    G  AK K Y TV+SL  +++  G+  ++Y+ N+LINC C
Sbjct: 76  FYRMVRMNPRPS-VAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLC 134

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++  V     +LG++ +    P A TF +LI GLC E +I EA  LF ++   G +P+V 
Sbjct: 135 RLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVI 194

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y T+INGLC+TG+T +A+++F++M   NG     CKPD +TY+TI D LCK+  V+ A 
Sbjct: 195 SYNTIINGLCKTGNTSMAVDVFKKMEQ-NG-----CKPDVVTYNTIIDSLCKDRLVNDAM 248

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           E   +M D  I P+V TY  ++ GFC     NEA  LF EM+ + V P+ VT  ++++ L
Sbjct: 249 EFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGL 308

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G + EA  + E M + GV P+ S YN LMDG+CL   +N AK++F  M   GC   V
Sbjct: 309 CKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGV 368

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY ILING+CK++ ++ A SL +EM  K + P  VTY+T
Sbjct: 369 HSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYST 408



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 175/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K++  +  +     +   G+ P+++TYN +++ FC +G+++    +
Sbjct: 226 PDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRL 285

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD VT T L+ GLC E  + EA  +F  +   G +P++ TY  L++G C 
Sbjct: 286 FKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCL 345

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +FE M          C P   +Y+ + +G CK   +D+AK L  +M  + +
Sbjct: 346 QRLMNEAKKVFEIMIRQG------CAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKAL 399

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPD VTY++L++G C      EA  +F EM   G+ PN+VT++++++  CK+G +DEA +
Sbjct: 400 NPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALK 459

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M +  + P+   +  L++G  + G++  AKELF  + ++G    + +Y ++I G  
Sbjct: 460 LLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLL 519

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    + A  L+ +M   G  P   +YN
Sbjct: 520 KEGLSDEAYDLFRKMEDDGFLPNSCSYN 547



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 160/329 (48%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++N +          +    LFK +    + PD  T  IL++  CK G VS   +
Sbjct: 260 PPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARL 319

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   +      P+  T+ +L+ G C +  + EA  +F  +   GC P V +Y  LING C
Sbjct: 320 VFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFC 379

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           ++     A +L  EM      +     PD +TYST+  GLC+ G   +A  +F +M    
Sbjct: 380 KSRRMDEAKSLLAEM------YHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYG 433

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P++VTY+ L+ GFC     +EA  L   M ++ ++PN+V   +++  +   GK++ A 
Sbjct: 434 LLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAK 493

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   +   G+RP    Y  ++ G    G  + A +LF  ME +G + +  SY ++I G+
Sbjct: 494 ELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGF 553

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +N++   A+ L  EM+ K     + T+ 
Sbjct: 554 LQNQDSSTAIRLIDEMVGKRFSANLSTFQ 582



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 136/262 (51%), Gaps = 6/262 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L       +  +    +F+ +   G  P +++YNILIN FCK  R+     +
Sbjct: 331 PNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSL 390

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD VT+++L++GLC   R  EA  +F ++ ++G  P++ TY+ L++G C+
Sbjct: 391 LAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCK 450

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            GH   AL L + M     E      P+ + ++ + +G+   G ++ AKELF K+  + I
Sbjct: 451 HGHLDEALKLLKSMQEKKLE------PNIVHHTILIEGMFIAGKLEVAKELFSKLFADGI 504

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P + TYT +I+G       +EA  LF +M D G  PN  ++NV++    +N     A R
Sbjct: 505 RPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIR 564

Query: 255 LLELMIQIGVRPDASVYNTLMD 276
           L++ M+      + S +  L+D
Sbjct: 565 LIDEMVGKRFSANLSTFQMLLD 586



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M   N  P V  +   +  F     ++    L  +M   GV  NV + NV
Sbjct: 69  IDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNV 128

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N LC+   +D A  +L  M ++G+ P AS +N L++G C  G++  A ELF  M   G
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRG 188

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +V SY  +ING CK      A+ ++ +M   G +P VVTYNT
Sbjct: 189 HEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNT 233



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 46/98 (46%)

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           N  +D+A      M+++  RP  + +   +  F    + +    L   M+  G   +V+S
Sbjct: 66  NISIDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYS 125

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +LIN  C+   ++ A+S+  +M   GI PT  T+N 
Sbjct: 126 LNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNA 163


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 151/340 (44%), Positives = 214/340 (62%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M  +PP +  FN +    AK KHY T +SL  RL   G+ PDL T NILINCFC
Sbjct: 47  FNRMLCMRHTPP-IIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFC 105

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            MG+++ GF VL +IL+  + P  +TFT+LIKGLC + ++ +A     KL A G K D  
Sbjct: 106 HMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQV 165

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLING+C+ G T  A+ L  ++       G + KP+   Y+TI D LCK   V +A 
Sbjct: 166 SYGTLINGVCKIGDTRGAIKLVRKID------GRLTKPNVEMYNTIIDALCKYQLVSEAY 219

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+ DVVTYT+LI GFC A+   EA  L  EM+ + + PNV T+N++++ L
Sbjct: 220 GLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  +L +M++  V+PD   Y+TLMDG+ L   + +A+ +F +M   G   DV
Sbjct: 280 CKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDV 339

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY ILING+CKNK ++ AL+L+ EM  K + P +VTY++
Sbjct: 340 HSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 158/285 (55%), Gaps = 6/285 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P++YTYNIL++  CK G+V     VL  +L++C  PD +T+++L+ G      + +A  +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHV 326

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F  +   G  PDV +YT LING C+      ALNLF+EM   N        P  +TYS++
Sbjct: 327 FNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSL 380

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DGLCK G +    +L  +M+D  I  +V+TY SLI G C     + A  LF +M DQG+
Sbjct: 381 IDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGI 440

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +P   TF ++++ LCK G++ +A    + ++  G   D   YN +++G C  G +  A  
Sbjct: 441 RPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALT 500

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +   ME NGC+ +  ++ I+IN   K  E + A  L  +M+ +G+
Sbjct: 501 MLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGL 545



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 172/330 (52%), Gaps = 6/330 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P V  +N +   L K +       LF  + + G+  D+ TY  LI  FC   ++    
Sbjct: 195 TKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAI 254

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  ++     P+  T+  L+  LC E ++ EA  +   +     KPDV TY+TL++G 
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGY 314

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
                   A ++F  M+      GV   PD  +Y+ + +G CK   VD+A  LF +M  +
Sbjct: 315 FLVYELKKAQHVFNAMS----LMGVT--PDVHSYTILINGFCKNKMVDEALNLFKEMHQK 368

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N+ P +VTY+SLI G C +   +    L  EM D+G+  NV+T+N +++ LCKNG +D A
Sbjct: 369 NMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRA 428

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L   M   G+RP +  +  L+DG C  GR+  A+E F  + + G   DV+ Y ++ING
Sbjct: 429 IALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMING 488

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +CK   +E AL++ S+M   G  P  VT++
Sbjct: 489 HCKQGLLEEALTMLSKMEENGCVPNAVTFD 518



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD A   F +M      P ++ +  ++  F     ++ A  L   +  +G+QP+++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C  G++     +L  +++ G +P    + TL+ G CL G+VN+A      + + G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 159

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              D  SYG LING CK  +  GA+ L  ++  +  +P V  YNT
Sbjct: 160 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNT 204



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  V ++N L   L KN H D  ++LF ++   G+ P  +T+ IL++  CK GR+     
Sbjct: 406 PANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQE 465

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
               +L   +  D   +  +I G C +  + EA  + +K+   GC P+  T+  +IN L 
Sbjct: 466 AFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALF 525

Query: 134 RTGHTIVALNLFEEM 148
           +      A  L  +M
Sbjct: 526 KKDENDKAEKLLRQM 540


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 138/329 (41%), Positives = 211/329 (64%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           PP+  FN + G L K KHY T +SLFK++   G+ PDL+T NILINCFC +G+++  F V
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG+IL+  + P+ +T  +L+KGLC +  + ++     K+ A G + D  +Y TL+NGLC+
Sbjct: 68  LGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCK 127

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  AL L   + + +       +P+ + Y+TI DGLCK+  V++A +L+ +M    I
Sbjct: 128 IGETRSALKLLRMIEDRS------TRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V+TY++LI GFC A    EA  L  EM+ + + PNV T+ ++M+ LCK GK+ EA  
Sbjct: 182 FPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKN 241

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL +M + GV+P+   YNTLMDG+CL G V  AK++F +M   G   +V+SY I+I+  C
Sbjct: 242 LLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLC 301

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+K ++ A++L  E+L K + P  VTY++
Sbjct: 302 KSKRVDEAMNLLREVLHKNMVPNTVTYSS 330



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 180/341 (52%), Gaps = 7/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +   +L++   P  + + N L   L         L    ++ + G   D  +Y  L+N
Sbjct: 65  FTVLGKILKLGYQPNTI-TLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLN 123

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+G       +L  I      P+ V + ++I GLC +  + EA  L++++ A G  P
Sbjct: 124 GLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFP 183

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V TY+TLI G C  G  + A  L  EM   N        P+  TY+ + D LCKEG V 
Sbjct: 184 NVITYSTLIYGFCLAGQLMEAFGLLNEMILKN------INPNVYTYTILMDALCKEGKVK 237

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AK L   M  E + P+VV+Y +L+ G+C   +   AK +F  M+ +GV PNV ++N+++
Sbjct: 238 EAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMI 297

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK+ ++DEA  LL  ++   + P+   Y++L+DGFC  GR+  A +L   M   G  
Sbjct: 298 DRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQP 357

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            DV +Y  L++  CKN+ ++ A +L+ +M  +GI+P   TY
Sbjct: 358 ADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTY 398



 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 181/335 (54%), Gaps = 6/335 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+    + P V  +N +   L K+K  +    L+  +++ G+FP++ TY+ LI  FC  G
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAG 199

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++   F +L  ++     P+  T+T L+  LC E ++ EA  L   +   G KP+V +Y 
Sbjct: 200 QLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYN 259

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TL++G C  G    A  +F  M     + GV   P+  +Y+ + D LCK   VD+A  L 
Sbjct: 260 TLMDGYCLIGEVQNAKQMFHTMV----QKGV--NPNVYSYNIMIDRLCKSKRVDEAMNLL 313

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            ++  +N+ P+ VTY+SLI GFC       A  L  EM  +G   +VVT+  +++ LCKN
Sbjct: 314 REVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKN 373

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
             +D+A+ L   M + G++P+   Y  L+DG C  GR   A++LF  +   GC  +V++Y
Sbjct: 374 QNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTY 433

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++I+G CK   ++ AL++ S+M   G  P  VT+
Sbjct: 434 NVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTF 468



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 163/320 (50%), Gaps = 11/320 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL   L K        +L   +   G+ P++ +YN L++ +C +G V     +
Sbjct: 218 PNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQM 277

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    P+  ++  +I  LC   R+ EA  L  ++      P+  TY++LI+G C+
Sbjct: 278 FHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCK 337

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL+L +EM +  G+       D +TY+++ D LCK   +DKA  LF+KMK+  I
Sbjct: 338 LGRITSALDLLKEMYH-RGQ-----PADVVTYTSLLDALCKNQNLDKATALFMKMKERGI 391

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TYT+LI G C       A+ LF  ++ +G + NV T+NV+++ LCK G +DEA  
Sbjct: 392 QPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALA 451

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M + G  PDA  +  ++       + ++A++L   M +   +R  F      +G  
Sbjct: 452 MKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDLLR--FRD---FHGER 506

Query: 315 KNKEIEGALSLYSEMLSKGI 334
              E + A  L  EM++KG+
Sbjct: 507 SPNENDKAEKLLHEMIAKGL 526


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  283 bits (725), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 141/334 (42%), Positives = 211/334 (63%), Gaps = 6/334 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+  L      +  ++    LF  +  +G+ PD+ T ++LI+  CK G+V     +
Sbjct: 335 PDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKL 394

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD VT T+L+KGLC + RI +A  LF K++  GC P+V T  TL+ GLC+
Sbjct: 395 LEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQ 454

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+  +AL L + M +    +G+ CKP+AI+YS I DGLCK G  D+A+ELF +MK   +
Sbjct: 455 SGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGV 514

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV++YTSLI GFC +  W +AK LF EM+D GVQP+V TF+V+++ LCK GK+ EA+ 
Sbjct: 515 IPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANE 574

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE+MIQ G  P+   Y TL+ G C+  R++ A +LF+ M+  GC+ DV +YG L+ G C
Sbjct: 575 LLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLC 634

Query: 315 KNKEIEGALSLYSEMLSK------GIRPTVVTYN 342
           +   I+ AL L+ +MLS         +P V++Y+
Sbjct: 635 QTGNIKTALELHKKMLSDTGQYGTNFKPDVISYS 668



 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 138/334 (41%), Positives = 210/334 (62%), Gaps = 6/334 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+  L     ++  ++    LF  +  +G+  D+ T ++LI+  CK G+V     +
Sbjct: 154 PDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANEL 213

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++     D VT+++LIKGLC + RI EA  LF  ++  GC+PD   Y TL+ GLC+
Sbjct: 214 LEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQ 273

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG+   AL L +EM N  G +G+ CKP  I+YS I DGLCK+   D+A+ELF +MK + I
Sbjct: 274 TGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGI 333

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV++YT+LI GFC +  W +AKCLF EM+D G+QP+V T +V+++ LCK GK+ EA++
Sbjct: 334 MPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANK 393

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE++IQ G  PD     TL+ G C+  R+++A +LF+ M+  GCM +V +   L+ G C
Sbjct: 394 LLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLC 453

Query: 315 KNKEIEGALSLYSEMLSK----GI--RPTVVTYN 342
           ++  I+ AL L+  MLS     GI  +P  ++Y+
Sbjct: 454 QSGNIKIALELHKNMLSDTSPYGINCKPNAISYS 487



 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 133/303 (43%), Positives = 199/303 (65%), Gaps = 6/303 (1%)

Query: 46  IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME 105
           +G+ PD+ T  +LI+ FCK G+V     +L  +++     D VT+++LIKGLC + RI E
Sbjct: 4   VGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISE 63

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           A  LF  ++  GC+PD   Y TL+ GLC+TG   +AL+L +EM N   ++G+ CKP  ++
Sbjct: 64  ATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVS 123

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           YS I DGLCK+   D+A+ELF +MK + + PDV++YTSLI GFC +  W +AKCLF EM+
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEML 183

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D G++ +V T +++++ LCK GK+ EA+ LLE+MIQ G   D   Y+TL+ G C+  R++
Sbjct: 184 DVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRIS 243

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK----GI--RPTVV 339
            A  LF+SM+  GC  D  +YG L+ G C+   I  AL L+ EML+     GI  +PT++
Sbjct: 244 EATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLI 303

Query: 340 TYN 342
           +Y+
Sbjct: 304 SYS 306



 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 153/238 (64%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+  L     ++  +     LF  +  IG+ PD+ T+++LI+  CK G+V     +
Sbjct: 516 PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANEL 575

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    P+ VT+T+L+KGLC   RI EA  LF K++  GC PDV TY TL+ GLC+
Sbjct: 576 LEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQ 635

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG+   AL L ++M +  G++G   KPD I+YS I DGLCK G  D+A+ELF +MK   +
Sbjct: 636 TGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGV 695

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            P+V++YTSLI GFC +    +AK LF EM+DQGVQ N VT++V+++  CK G++D+A
Sbjct: 696 IPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 753



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 172/335 (51%), Gaps = 12/335 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S++I+   L K++  D    LFK + + G+ PD+ +Y  LI+ FC  G+      +
Sbjct: 300 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 359

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     PD  T + LI  LC + +++EA  L   +   GC PDV T TTL+ GLC 
Sbjct: 360 FNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCM 419

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-- 192
                 A  LF +M        + C P+ +T +T+  GLC+ G +  A EL   M  +  
Sbjct: 420 KHRISKATQLFLKMQK------LGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTS 473

Query: 193 ----NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
               N  P+ ++Y+ +I G C     +EA+ LF EM   GV P+V+++  +++  C++GK
Sbjct: 474 PYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGK 533

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
             +A  L   M+ IGV+PD + ++ L+D  C  G+V  A EL   M   GC+ +  +Y  
Sbjct: 534 WKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTT 593

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L+ G C N  I  A  L+ +M   G  P VVTY T
Sbjct: 594 LVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGT 628



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 173/336 (51%), Gaps = 18/336 (5%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + +++ L   L           LF  +  +G  PD   Y  L+   C+ G+++    +  
Sbjct: 45  IVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQ 104

Query: 77  RILRSCFT------PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            +L           P  V+++ +I GLC + R  EA  LF +++A G  PDV +YT+LI+
Sbjct: 105 EMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIH 164

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G CR+G    A  LF EM +      V  + D  T S + D LCKEG V +A EL   M 
Sbjct: 165 GFCRSGKWEKAKCLFNEMLD------VGIRSDVTTSSMLIDILCKEGKVIEANELLEVMI 218

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
                 D+VTY++LI+G C  +  +EA  LF+ M   G +P+ + +  +M  LC+ G ++
Sbjct: 219 QRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNIN 278

Query: 251 EASRLLELMIQ------IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
            A +L + M+       I  +P    Y+ ++DG C   R + A+ELF  M++ G M DV 
Sbjct: 279 TALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVI 338

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           SY  LI+G+C + + E A  L++EML  GI+P V T
Sbjct: 339 SYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTT 374



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 169/321 (52%), Gaps = 18/321 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNS------IGLFPDLYTYNILINCFCKMGRV 68
           P V +   L   L ++ +    L L K + S      I   P+  +Y+I+I+  CK GR 
Sbjct: 440 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRE 499

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +   +      PD +++TSLI G C   +  +A  LF ++   G +PDV T++ L
Sbjct: 500 DEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVL 559

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I+ LC+ G  I A  L E M          C P+ +TY+T+  GLC    + +A +LF+K
Sbjct: 560 IDMLCKEGKVIEANELLEVMIQRG------CIPNTVTYTTLVKGLCMNDRISEATQLFMK 613

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ------PNVVTFNVIMNE 242
           M+     PDVVTY +L++G C   +   A  L  +M+    Q      P+V+++++I++ 
Sbjct: 614 MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDG 673

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK+G+ DEA  L + M  +GV P+   Y +L+ GFC +G++  AK LF  M   G   +
Sbjct: 674 LCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLN 733

Query: 303 VFSYGILINGYCKNKEIEGAL 323
             +Y ++I+G+CK  +I+ AL
Sbjct: 734 AVTYSVMIHGFCKEGQIDKAL 754



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 137/272 (50%), Gaps = 12/272 (4%)

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           +L     PD  T   LI   C E +++EA  L   +   GC  D+ TY+TLI GLC    
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE----- 192
              A  LF  M        + C+PDAI Y T+  GLC+ G ++ A  L  +M ++     
Sbjct: 61  ISEATQLFMSMKK------LGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYG 114

Query: 193 -NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               P +V+Y+ +I G C     +EA+ LF EM  QG+ P+V+++  +++  C++GK ++
Sbjct: 115 IKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEK 174

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  L   M+ +G+R D +  + L+D  C  G+V  A EL   M   GC+ D+ +Y  LI 
Sbjct: 175 AKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIK 234

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G C    I  A  L+  M   G RP  + Y T
Sbjct: 235 GLCMKHRISEATRLFMSMQKLGCRPDAIAYGT 266


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  283 bits (724), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 142/340 (41%), Positives = 209/340 (61%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M+RM+P P  V  F    G +AK K Y + +SL  +++  G+  ++Y+ N+LINC C
Sbjct: 84  FYRMVRMNPRPS-VVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLC 142

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++  V     V+G++ +    PDA+TF +LI GLC E +I EA  LF ++   G +P+V 
Sbjct: 143 RLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVI 202

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y T+INGLC+ G+TI+A+ +F +M    G      KP+ +TY+TI D LCK+  V++A 
Sbjct: 203 SYNTVINGLCKNGNTIMAVRVFRKMEQNRG------KPNVVTYNTIIDSLCKDRLVNEAV 256

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           E   +M D  I PDVVTY +++ GFC     NEA  LF EM+ + V P+ VTFN++++ L
Sbjct: 257 EFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGL 316

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G + EA  + E M + G  P+A  YN LMDG+CL  +++ A ++   M   GC  ++
Sbjct: 317 CKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNL 376

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY ILINGYCK+K +  A  L SEM  K + P  VTY+T
Sbjct: 377 SSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYST 416



 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 176/327 (53%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L         + LF  +   G  P++ +YN +IN  CK G       V
Sbjct: 164 PDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRV 223

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++ ++   P+ VT+ ++I  LC +  + EA    +++   G  PDV TY T+++G C 
Sbjct: 224 FRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCS 283

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  LF+EM   N        PD +T++ + DGLCKEG V +A+ +   M ++  
Sbjct: 284 LGQLNEATRLFKEMVGRN------VMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGA 337

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY +L+ G+C  N  +EA  +   M+ +G  PN+ ++N+++N  CK+ +M+EA R
Sbjct: 338 EPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKR 397

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M +  + PD   Y+TLM G C  GR   A  LF  M S+G + D+ +Y IL++G+C
Sbjct: 398 LLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFC 457

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K+  ++ AL L  EM  + I+P ++ Y
Sbjct: 458 KHGHLDEALKLLKEMHERRIKPNIILY 484



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 176/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K++  +  +     +   G+ PD+ TYN +++ FC +G+++    +
Sbjct: 234 PNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRL 293

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD VTF  L+ GLC E  + EA  +   +   G +P+ +TY  L++G C 
Sbjct: 294 FKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCL 353

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +   M       G  C P+  +Y+ + +G CK   +++AK L  +M ++N+
Sbjct: 354 HNQMDEAIKVLGIM------IGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNL 407

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY++L++G C      EA  LF EM   G+ P+++ ++++++  CK+G +DEA +
Sbjct: 408 TPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALK 467

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M +  ++P+  +Y  L+ G  + G++  AKELF  + ++G   D+++Y ++I G  
Sbjct: 468 LLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLL 527

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    + A   + +M   G  P   +YN
Sbjct: 528 KEGLSDEAYEFFRKMEDDGFLPDSCSYN 555



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 164/329 (49%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++N +          +    LFK +    + PD  T+NIL++  CK G VS    
Sbjct: 268 PPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARC 327

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   +      P+A T+ +L+ G C  +++ EA  +   +   GC P++ +Y  LING C
Sbjct: 328 VSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYC 387

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           ++     A  L  EM+  N        PD +TYST+  GLC+ G   +A  LF +M    
Sbjct: 388 KSKRMNEAKRLLSEMSEKN------LTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSG 441

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD++ Y+ L+ GFC     +EA  L  EM ++ ++PN++ + +++  +   GK++ A 
Sbjct: 442 LLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAK 501

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   +   G+RPD   YN ++ G    G  + A E F  ME +G + D  SY ++I G+
Sbjct: 502 ELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGF 561

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +N++   A+ L  EM+ K       T+ 
Sbjct: 562 LQNQDSSTAIQLIDEMVGKRFSADSSTFQ 590



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 150/297 (50%), Gaps = 6/297 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FNIL   L K         + + +   G  P+ YTYN L++ +C   ++     V
Sbjct: 304 PDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKV 363

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG ++     P+  ++  LI G C   R+ EA  L +++      PD  TY+TL+ GLC+
Sbjct: 364 LGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQ 423

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    ALNLF+EM +     G++  PD + YS + DG CK G +D+A +L  +M +  I
Sbjct: 424 VGRPREALNLFKEMCSS----GLL--PDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI 477

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+++ YT LIRG   A     AK LF ++   G++P++ T+NV++  L K G  DEA  
Sbjct: 478 KPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYE 537

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
               M   G  PD+  YN ++ GF      + A +L   M       D  ++ +L++
Sbjct: 538 FFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 87/165 (52%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M   N  P VV +   +        ++ A  L  +M   GV  NV + NV
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNV 136

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N LC+   +D A  ++  M ++G++PDA  +NTL++G C  G++  A  LF  M  +G
Sbjct: 137 LINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSG 196

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +V SY  +ING CKN     A+ ++ +M     +P VVTYNT
Sbjct: 197 HEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNT 241


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 141/340 (41%), Positives = 202/340 (59%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML MHP PP +  F  +   + K K Y TVLSL ++++S G+  ++YT N+LIN FC
Sbjct: 62  FNRMLHMHP-PPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFC 120

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV+  F VL +IL+    PD  +FT+LIKGLC E +I EA  LF K+   G +PDV 
Sbjct: 121 HLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVV 180

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            Y TLINGLC+TGHT  A+ L   M  GN      C+PD + Y T+   LCK+    +A 
Sbjct: 181 IYATLINGLCKTGHTSAAIRLLRSMEKGN------CQPDVVVYGTLIHSLCKDRQQTQAF 234

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+P++VT  SL+   C   +W     L  EM+D  + PN ++   +++ L
Sbjct: 235 NLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDAL 294

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G + +A  ++++M Q GV PD   Y  L+DG CL   ++ A ++F  M   GC  +V
Sbjct: 295 CKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNV 354

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           FSY  LINGYCK + ++ A+ L+ EM  + + P  VTYNT
Sbjct: 355 FSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNT 394



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 173/329 (52%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  L   L K++      +LF  + + G+ P++ T N L+   C +G       +
Sbjct: 212 PDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTL 271

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ S   P+A++ T+++  LC E  + +A  +   +   G +PDV TYT LI+G C 
Sbjct: 272 LNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCL 331

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +F+ M +        C P+  +Y+T+ +G CK   +DKA  LF +M  + +
Sbjct: 332 RSEMDEAVKVFDMMVHKG------CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKL 385

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY +LI G C+     +A  LF EM+  G  P++VT+ ++++ LCKN  +D+A  
Sbjct: 386 IPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMA 445

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ +    + PD  +Y  ++DG C  G +  A++LF ++ S G   +V++Y I+ +G C
Sbjct: 446 LLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLC 505

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   ++ A  L+ EM          TYNT
Sbjct: 506 KRGLLDEATKLFMEMDENACSADGCTYNT 534



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 173/342 (50%), Gaps = 11/342 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGC--LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNIL 58
           F +F  M+    SP  V   ++++    L + KH +T+L+    +    + P+  +   +
Sbjct: 234 FNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLN---EMVDSKIMPNAISLTTV 290

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           ++  CK G V+    V+  + +S   PD VT+T+LI G C  S + EA  +F  +   GC
Sbjct: 291 VDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGC 350

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF+Y TLING C+      A+ LFEEM            P+ +TY+T+  GLC  G 
Sbjct: 351 APNVFSYNTLINGYCKIERMDKAMYLFEEMCRQK------LIPNTVTYNTLIHGLCHVGR 404

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +  A  LF +M      PD+VTY  L+   C     ++A  L   +    + P++  + +
Sbjct: 405 LQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTI 464

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ +C+ G++++A  L   +   G++P+   YN +  G C  G ++ A +LF+ M+ N 
Sbjct: 465 VIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENA 524

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           C  D  +Y  +  G+ +N E   A+ L  EML++G    V T
Sbjct: 525 CSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVST 566



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 135/270 (50%), Gaps = 8/270 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+      P V S+N L     K +  D  + LF+ +    L P+  TYN LI+  
Sbjct: 341 VFDMMVH-KGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGL 399

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +GR+     +   ++     PD VT+  L+  LC    + +A AL   +      PD+
Sbjct: 400 CHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDI 459

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YT +I+G+CR G    A +LF  +++         KP+  TY+ +T GLCK G +D+A
Sbjct: 460 QIYTIVIDGMCRAGELEDARDLFSNLSSKG------LKPNVWTYNIMTHGLCKRGLLDEA 513

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF++M +   + D  TY ++ +GF   N+ + A  L  EM+ +G   +V T  +++  
Sbjct: 514 TKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGM 573

Query: 243 LCKNG-KMDEASRLLELMIQIGVRPDASVY 271
           L  +G    EA +L ++   + ++   +V+
Sbjct: 574 LSDDGLDQSEAHKLEDMFPHLRIQVKDTVF 603



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 78/165 (47%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M   +  P +V +  ++        ++    L  +M   G+  NV T NV
Sbjct: 55  LDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNV 114

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   +++ A  +L  ++++G +PD + + TL+ G CL G++  A  LF  M   G
Sbjct: 115 LINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEG 174

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              DV  Y  LING CK      A+ L   M     +P VV Y T
Sbjct: 175 FQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGT 219



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%)

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           + + N  ++A   F  M+     P++V F  I+  + K  +      L   M   G+  +
Sbjct: 49  YLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHN 108

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
               N L++ FC   RVN A  +   +   GC  D  S+  LI G C   +I  AL L+ 
Sbjct: 109 VYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFD 168

Query: 328 EMLSKGIRPTVVTYNT 343
           +M+ +G +P VV Y T
Sbjct: 169 KMIWEGFQPDVVIYAT 184


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/342 (42%), Positives = 210/342 (61%), Gaps = 9/342 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ +L + P PP V  FN L G L K KHY TV+SL K+++   + P++YT  ILINC C
Sbjct: 57  FNQLLGIRPLPP-VVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLC 115

Query: 64  KMGR--VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
              R  V   F  LG++ +    P  VTF +L+ GLC++++I++A  LF ++   G  P 
Sbjct: 116 HSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPS 175

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TYTT+I GLC+ GHT  AL L ++M          CKPD + Y+T+ D LCK+   ++
Sbjct: 176 LITYTTIIKGLCKIGHTTNALQLLKKMEEKG------CKPDVVAYNTVIDSLCKDRRANE 229

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A   F +M D+ I P+VVTY+S++ GFC     NEA  LF +M+ + V PN VTF ++++
Sbjct: 230 AMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVD 289

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G + EA R+ E+M + GV PDA  Y+ LMDG+CL  +++ A++LF  M   G   
Sbjct: 290 GLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAP 349

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            V  Y ILING+CK++ +  A +L SEM  + + P  VTY+T
Sbjct: 350 SVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYST 391



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 181/328 (55%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K++  +  +  F  +   G+ P++ TY+ +++ FC +G+++    +
Sbjct: 209 PDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSL 268

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+ VTFT L+ GLC E  I+EA  +F  +   G +PD +TY+ L++G C 
Sbjct: 269 FKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCL 328

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF+ M  G G       P    Y+ + +G CK   +++AK L  +M D ++
Sbjct: 329 QSQMDEAQKLFDIMV-GKG-----FAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDL 382

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY++L++GFC A     A+ LF EM   G+ P+ +T++++++ LCK+G +DEA R
Sbjct: 383 TPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFR 442

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M +  + P   +YN L+ G C  G++  A+ELF ++   G    V +Y ++I+G  
Sbjct: 443 LLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLL 502

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K      A  ++ +M+  G  P   TYN
Sbjct: 503 KEGLSNEACEMFRKMVVNGCLPNSCTYN 530



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 149/297 (50%), Gaps = 6/297 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F IL   L K         +F+ +   G+ PD YTY+ L++ +C   ++     +
Sbjct: 279 PNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKL 338

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++   F P    +  LI G C   R+ EA  L +++      PD  TY+TL+ G C+
Sbjct: 339 FDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQ 398

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA  LF+EM +    +G++  PD+ITYS + DGLCK G +D+A  L   M++  I
Sbjct: 399 AGRPQVAQKLFKEMCS----YGLL--PDSITYSILLDGLCKHGHLDEAFRLLKAMQESKI 452

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +  Y  LI+G C       A+ LF  +  +G+QP+VVT+ V+++ L K G  +EA  
Sbjct: 453 EPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACE 512

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           +   M+  G  P++  YN  + GF   G  + A  L   M   G   D  ++ +L++
Sbjct: 513 MFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 2/200 (1%)

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
           + +A+ N   G+   P  + ++ +   L K+        L  +M   NI P+V T T LI
Sbjct: 52  DAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILI 111

Query: 206 RGFCYAN--DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
              C++N    + A     +M   G+QP  VTF  ++N LC   K+ +A +L + + ++G
Sbjct: 112 NCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMG 171

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
             P    Y T++ G C  G    A +L   ME  GC  DV +Y  +I+  CK++    A+
Sbjct: 172 FAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAM 231

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
             +SEM+ +GI P VVTY++
Sbjct: 232 YFFSEMVDQGIPPNVVTYSS 251



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 37/188 (19%)

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN------ 246
           NI+P  +T       +   +   +A   F +++     P VV FN ++  L K       
Sbjct: 29  NISPSSITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTV 88

Query: 247 ----GKMDEAS---------------------------RLLELMIQIGVRPDASVYNTLM 275
                +MD ++                             L  M ++G++P    + TL+
Sbjct: 89  ISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLL 148

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +G C   ++  A +LF  +   G    + +Y  +I G CK      AL L  +M  KG +
Sbjct: 149 NGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCK 208

Query: 336 PTVVTYNT 343
           P VV YNT
Sbjct: 209 PDVVAYNT 216


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 148/340 (43%), Positives = 213/340 (62%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M  +PP +  FN +    AK KHY T +SL  RL   G+ PDL T NILINCFC
Sbjct: 47  FNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFC 105

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            MG+++ GF VL +IL+  + PD VT  +LIKGLC + ++ +A     KL A G + +  
Sbjct: 106 HMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQV 165

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLING+C+ G T  A+ L +++       G + KP+ + YSTI D LCK   V +A 
Sbjct: 166 SYGTLINGVCKIGDTRAAIKLLQKID------GRLTKPNVVMYSTIIDALCKYQLVSEAY 219

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+ DVVTY++LI GFC      EA  L  EM+ + + PNV T+N++++ L
Sbjct: 220 GLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  +L +M++  V+PD   Y+TLMDG+ L   V +A+ +F +M   G   DV
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDV 339

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y ILING+CKNK ++ AL+L+ EM  K + P +VTY++
Sbjct: 340 HTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 158/294 (53%), Gaps = 11/294 (3%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P++YTYNIL++  CK G+V     VL  +L++C  PD +T+++L+ G      + +A  +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F  +   G  PDV TYT LING C+      ALNLF+EM   N        P  +TYS++
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSL 380

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DGLCK G +    +L  +M D     +V+TY+SLI G C     + A  LF +M DQG+
Sbjct: 381 IDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGI 440

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +PN  TF ++++ LCK G++ +A  + + ++  G   +   YN ++DG C  G +  A  
Sbjct: 441 RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALT 500

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS-----KGIRPTV 338
           +   ME NGC+ D  ++ I+I    K  E  G +    ++       KG  P++
Sbjct: 501 MLSKMEDNGCIPDAVTFEIIIIALFKKDENGGNVGFDKKVWEIVEHKKGETPSI 554



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/272 (38%), Positives = 158/272 (58%), Gaps = 8/272 (2%)

Query: 31   KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
            KHY T +SL  RL   G+ PDL+T NILINCFC MG+++  F +L +IL+  + PD +TF
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 91   TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
            T+LI GLC + ++ +A     KL A G + +  +Y TLING+C+ G T  A+ L  ++  
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID- 1058

Query: 151  GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
                 G + KPD + Y+TI D LCK   V KA  LF +M  + I+ DVVTY +LI GFC 
Sbjct: 1059 -----GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCI 1113

Query: 211  ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK--MDEASRLLELMIQIGVRPDA 268
                 EA  L  +M+ + + PNV T+N++++ LCK GK  +DE+  +L  M   G + +A
Sbjct: 1114 VGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANA 1173

Query: 269  SVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
              +  ++         ++ ++L   M + G +
Sbjct: 1174 VTFEIIISALFEKDENDKVEKLLHEMIARGLL 1205



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 173/329 (52%), Gaps = 6/329 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P V  ++ +   L K +       LF  +   G+  D+ TY+ LI  FC  G++    
Sbjct: 195 TKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAI 254

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  ++     P+  T+  L+  LC E ++ EA ++   +     KPDV TY+TL++G 
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
                   A ++F  M+      GV   PD  TY+ + +G CK   VD+A  LF +M  +
Sbjct: 315 FLVYEVKKAQHVFNAMS----LMGVT--PDVHTYTILINGFCKNKMVDEALNLFKEMHQK 368

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N+ P +VTY+SLI G C +        L  EM D+G   NV+T++ +++ LCKNG +D A
Sbjct: 369 NMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRA 428

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L   M   G+RP+   +  L+DG C  GR+  A+E+F  + + G   +V++Y ++I+G
Sbjct: 429 IALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDG 488

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +CK   +E AL++ S+M   G  P  VT+
Sbjct: 489 HCKQGLLEEALTMLSKMEDNGCIPDAVTF 517



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 166/328 (50%), Gaps = 6/328 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   + N L   L         L    +L + G   +  +Y  LIN  CK+G       
Sbjct: 126 PPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIK 185

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L +I      P+ V ++++I  LC    + EA  LF+++   G   DV TY+TLI G C
Sbjct: 186 LLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFC 245

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A+ L  EM            P+  TY+ + D LCKEG V +AK +   M    
Sbjct: 246 IEGKLKEAIGLLNEMVLK------TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC 299

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PDV+TY++L+ G+    +  +A+ +F  M   GV P+V T+ +++N  CKN  +DEA 
Sbjct: 300 VKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEAL 359

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + M Q  + P    Y++L+DG C +GR+    +L   M   G   +V +Y  LI+G 
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGL 419

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           CKN  ++ A++L+++M  +GIRP   T+
Sbjct: 420 CKNGHLDRAIALFNKMKDQGIRPNTFTF 447



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 8/238 (3%)

Query: 106  AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
            A +L  +L   G +PD+FT   LIN  C  G      ++  ++            PD IT
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRG------YHPDTIT 998

Query: 166  YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
            ++T+ +GLC +G V+KA     K+  +    + V+Y +LI G C   D   A  L  ++ 
Sbjct: 999  FTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID 1058

Query: 226  DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             +  +P+VV +N I++ LCK+  + +A  L   M   G+  D   YNTL+ GFC+ G++ 
Sbjct: 1059 GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLK 1118

Query: 286  RAKELFVSMESNGCMRDVFSYGILINGYCKNKE--IEGALSLYSEMLSKGIRPTVVTY 341
             A  L   M       +V +Y IL++  CK  +  ++ +LS+ S+M   G +   VT+
Sbjct: 1119 EAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTF 1176



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 83/165 (50%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD A   F +M      P ++ +  ++  F     ++ A  L   +  +G+QP+++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C  G++     +L  +++ G  PD    NTL+ G CL G+V +A      + + G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +  SYG LING CK  +   A+ L  ++  +  +P VV Y+T
Sbjct: 160 FQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYST 204



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%)

Query: 182  AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
            A  L  +++ + I PD+ T   LI  FC+         +  +++ +G  P+ +TF  ++N
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLIN 1004

Query: 242  ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             LC  G++++A    + ++  G + +   Y TL++G C  G    A +L   ++      
Sbjct: 1005 GLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKP 1064

Query: 302  DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            DV  Y  +I+  CK++ +  A  L+ EM  KGI   VVTYNT
Sbjct: 1065 DVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNT 1106



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 3   IFDYMLRMHP--SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           ++D +  MH    P  V +++ L   L KN H D  ++LF ++   G+ P+ +T+ IL++
Sbjct: 393 VWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLD 452

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK GR+     V   +L   +  +  T+  +I G C +  + EA  + +K+   GC P
Sbjct: 453 GLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIP 512

Query: 121 DVFTYTTLINGLCR 134
           D  T+  +I  L +
Sbjct: 513 DAVTFEIIIIALFK 526


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  280 bits (717), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 146/340 (42%), Positives = 210/340 (61%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M  +PP +  FN +    AK KHY T +SL  RL   G+ PDL T NILINCFC
Sbjct: 47  FNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFC 105

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            MG+++ GF VL +IL+  + PD VT  +LIKGLC + ++ +A     KL A G + +  
Sbjct: 106 HMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQV 165

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLING+C+ G T  A+    ++       G + KPD + Y+TI D +CK   V +A 
Sbjct: 166 SYATLINGVCKIGDTRAAIKFLRKID------GRLTKPDVVMYNTIIDAMCKYQLVSEAY 219

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+ DVVTY +LI GFC      EA  L  EM+ + + PNV T+N++++ L
Sbjct: 220 GLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  +L +M++  V+PD   Y+TLMDG+ L   V +A+ +F +M   G   DV
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDV 339

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y ILING+CKNK ++ AL+L+ EM  K + P +VTY++
Sbjct: 340 HTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 160/285 (56%), Gaps = 6/285 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P++YTYNIL++  CK G+V     VL  +L++C  PD +T+++L+ G      + +A  +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F  +   G  PDV TYT LING C+      ALNLF+EM   N        P  +TYS++
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSL 380

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DGLCK G +    +L  +M+D     DV+TY+SLI G C     + A  LF +M DQ +
Sbjct: 381 IDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEI 440

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +PN+ TF ++++ LCK G++ +A  + + ++  G   +   YN +++G C  G +  A  
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALT 500

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +   ME NGC+ + F++  +I    K  E + A  L  +M+++G+
Sbjct: 501 MLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 174/331 (52%), Gaps = 6/331 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P V  +N +   + K +       LF  +   G+  D+ TYN LI  FC +G++    
Sbjct: 195 TKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAI 254

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  ++     P+  T+  L+  LC E ++ EA ++   +     KPDV TY+TL++G 
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
                   A ++F  M+      GV   PD  TY+ + +G CK   VD+A  LF +M  +
Sbjct: 315 FLVYEVKKAQHVFNAMS----LMGVT--PDVHTYTILINGFCKNKMVDEALNLFKEMHQK 368

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N+ P +VTY+SLI G C +   +    L  EM D+G   +V+T++ +++ LCKNG +D A
Sbjct: 369 NMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRA 428

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L   M    +RP+   +  L+DG C  GR+  A+E+F  + + G   +V++Y ++ING
Sbjct: 429 IALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMING 488

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +CK   +E AL++ S+M   G  P   T+ T
Sbjct: 489 HCKQGLLEEALTMLSKMEDNGCIPNAFTFET 519



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD A   F +M      P ++ +  ++  F     ++ A  L   +  +G+QP+++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C  G++     +L  +++ G  PD    NTL+ G CL G+V +A      + + G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +  SY  LING CK  +   A+    ++  +  +P VV YNT
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNT 204



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    P  V +++ L   L KN H D  ++LF ++    + P+++T+ IL++  CK GR
Sbjct: 400 MRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGR 459

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     V   +L   +  +  T+  +I G C +  + EA  + +K+   GC P+ FT+ T
Sbjct: 460 LKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFET 519

Query: 128 LINGLCRTGHTIVALNLFEEM 148
           +I  L +      A  L  +M
Sbjct: 520 IIIALFKKDENDKAEKLLRQM 540



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F IL   L K         +F+ L + G   ++YTYN++IN  CK G +     +
Sbjct: 442 PNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTM 501

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           L ++  +   P+A TF ++I  L  +    +A  L  ++ A G
Sbjct: 502 LSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/340 (43%), Positives = 211/340 (62%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M  +PP +  FN +    AK KHY T +SL  RL   G+ PDL T NILINCFC
Sbjct: 47  FNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFC 105

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            MG+++ GF VL +IL+  + PD VT  +LIKGLC + ++ +A     KL A G + +  
Sbjct: 106 HMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQV 165

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLING+C+ G T  A+ L  ++       G + KP+   YSTI D LCK   V +A 
Sbjct: 166 SYATLINGVCKIGDTRGAIKLLRKID------GRLTKPNVEMYSTIIDALCKYQLVSEAY 219

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+ DVVTY++LI GFC      EA  L  EM+ + + PNV T+N++++ L
Sbjct: 220 GLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  +L +M++  V+PD   Y+TLMDG+ L   V +A+ +F +M   G   DV
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDV 339

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y ILING+CKNK ++ AL+L+ EM  K + P +VTY++
Sbjct: 340 HTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 160/285 (56%), Gaps = 6/285 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P++YTYNIL++  CK G+V     VL  +L++C  PD +T+++L+ G      + +A  +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F  +   G  PDV TYT LING C+      ALNLF+EM   N        P  +TYS++
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSL 380

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DGLCK G +    +L  +M+D     DV+TY+SLI G C     + A  LF +M DQ +
Sbjct: 381 IDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEI 440

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +PN+ TF ++++ LCK G++ +A  + + ++  G   +   YN +++G C  G +  A  
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALT 500

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +   ME NGC+ + F++  +I    K  E + A  L  +M+++G+
Sbjct: 501 MLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 172/331 (51%), Gaps = 6/331 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P V  ++ +   L K +       LF  +   G+  D+ TY+ LI  FC  G++    
Sbjct: 195 TKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAI 254

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  ++     P+  T+  L+  LC E ++ EA ++   +     KPDV TY+TL++G 
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
                   A ++F  M+      GV   PD  TY+ + +G CK   VD+A  LF +M  +
Sbjct: 315 FLVYEVKKAQHVFNAMS----LMGVT--PDVHTYTILINGFCKNKMVDEALNLFKEMHQK 368

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N+ P +VTY+SLI G C +        L  EM D+G   +V+T++ +++ LCKNG +D A
Sbjct: 369 NMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRA 428

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L   M    +RP+   +  L+DG C  GR+  A+E+F  + + G   +V++Y ++ING
Sbjct: 429 IALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMING 488

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +CK   +E AL++ S+M   G  P   T+ T
Sbjct: 489 HCKQGLLEEALTMLSKMEDNGCIPNAFTFET 519



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 165/328 (50%), Gaps = 6/328 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   + N L   L         L    +L + G   +  +Y  LIN  CK+G       
Sbjct: 126 PPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIK 185

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L +I      P+   ++++I  LC    + EA  LF+++   G   DV TY+TLI G C
Sbjct: 186 LLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFC 245

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A+ L  EM            P+  TY+ + D LCKEG V +AK +   M    
Sbjct: 246 IEGKLKEAIGLLNEMVLK------TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC 299

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PDV+TY++L+ G+    +  +A+ +F  M   GV P+V T+ +++N  CKN  +DEA 
Sbjct: 300 VKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEAL 359

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + M Q  + P    Y++L+DG C +GR+    +L   M   G   DV +Y  LI+G 
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGL 419

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           CKN  ++ A++L+++M  + IRP + T+
Sbjct: 420 CKNGHLDRAIALFNKMKDQEIRPNIFTF 447



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 162/306 (52%), Gaps = 6/306 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           + L ++++     P++  Y+ +I+  CK   VS  + +   +     + D VT+++LI G
Sbjct: 184 IKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYG 243

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
            C E ++ EA  L  ++      P+V+TY  L++ LC+ G    A ++   M        
Sbjct: 244 FCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVM------LK 297

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
              KPD ITYST+ DG      V KA+ +F  M    + PDV TYT LI GFC     +E
Sbjct: 298 ACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDE 357

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  LF EM  + + P +VT++ +++ LCK+G++     L++ M   G   D   Y++L+D
Sbjct: 358 ALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLID 417

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C  G ++RA  LF  M+      ++F++ IL++G CK   ++ A  ++ ++L+KG   
Sbjct: 418 GLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHL 477

Query: 337 TVVTYN 342
            V TYN
Sbjct: 478 NVYTYN 483



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD A   F +M      P ++ +  ++  F     ++ A  L   +  +G+QP+++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C  G++     +L  +++ G  PD    NTL+ G CL G+V +A      + + G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +  SY  LING CK  +  GA+ L  ++  +  +P V  Y+T
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYST 204



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    P  V +++ L   L KN H D  ++LF ++    + P+++T+ IL++  CK GR
Sbjct: 400 MRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGR 459

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     V   +L   +  +  T+  +I G C +  + EA  + +K+   GC P+ FT+ T
Sbjct: 460 LKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFET 519

Query: 128 LINGLCRTGHTIVALNLFEEM 148
           +I  L +      A  L  +M
Sbjct: 520 IIIALFKKDENDKAEKLLRQM 540



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F IL   L K         +F+ L + G   ++YTYN++IN  CK G +     +
Sbjct: 442 PNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTM 501

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           L ++  +   P+A TF ++I  L  +    +A  L  ++ A G
Sbjct: 502 LSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 143/341 (41%), Positives = 206/341 (60%), Gaps = 6/341 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ +L  +   PP   F  + G L K K Y T LSL +++   G+ PD  T N+L+NCF
Sbjct: 44  LFNRLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCF 103

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            ++G +   F V  +IL+  + PDAVTFT LIKGLC +  + +A     K+ A G + D 
Sbjct: 104 SQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ 163

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y TLINGLCR G T  A+ L   +       G + +P+ + YSTI D +CK+  V+ A
Sbjct: 164 VSYGTLINGLCRVGETKAAVQLLRRVD------GKLVRPNVVMYSTIIDSMCKDKLVNDA 217

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L+ +M  + I+PDVVTY+SLI GFC       A  LF  M+   + PNV TF+++++ 
Sbjct: 218 FDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDG 277

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK GK+ EA  +L +M++  V+ D   YN+LMDG+CL  +VN+AK LF  M   G   D
Sbjct: 278 FCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPD 337

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V+SY I+ING+CK K ++ A+ L+ EM  K I P VVTYN+
Sbjct: 338 VWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNS 378



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 180/341 (52%), Gaps = 7/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  +L+    P  V +F IL   L         L    ++ + G   D  +Y  LIN
Sbjct: 113 FSVFAKILKKGYHPDAV-TFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLIN 171

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C++G       +L R+      P+ V ++++I  +C +  + +A  L+ ++ +    P
Sbjct: 172 GLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISP 231

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV TY++LI+G C  G    A++LF  M + N        P+  T+S + DG CKEG V 
Sbjct: 232 DVVTYSSLISGFCVVGKLKYAVDLFNRMISDN------INPNVYTFSILIDGFCKEGKVR 285

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AK +   M  +N+  DVVTY SL+ G+C     N+AK LF  M  +GV P+V ++++++
Sbjct: 286 EAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMI 345

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N  CK   +DEA +L E M    + P+   YN+L+DG C +GR + A EL   M   G  
Sbjct: 346 NGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQP 405

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++ +Y  +++  CKN  ++ A+ L +++  KGI+P + TY
Sbjct: 406 SNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTY 446



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 187/338 (55%), Gaps = 15/338 (4%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           F ++  M+    SP  V   +++ G C+     Y   + LF R+ S  + P++YT++ILI
Sbjct: 218 FDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKY--AVDLFNRMISDNINPNVYTFSILI 275

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           + FCK G+V     VL  +++     D VT+ SL+ G C   ++ +A +LF  +   G  
Sbjct: 276 DGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVT 335

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKE 176
           PDV++Y+ +ING C+      A+ LFEEM          CK   P+ +TY+++ DGLCK 
Sbjct: 336 PDVWSYSIMINGFCKIKMVDEAMKLFEEMH---------CKQIFPNVVTYNSLVDGLCKS 386

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G    A EL  +M D     +++TY S++   C  N  ++A  L  ++ ++G+QP++ T+
Sbjct: 387 GRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTY 446

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            V++N LCK G++D+A ++ E ++  G  P+   Y +L++GFC  G  +    +   M+ 
Sbjct: 447 TVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKD 506

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           NGC+ +  +Y ILI+   +  E + A  L  EM+++G+
Sbjct: 507 NGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 177/327 (54%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   + K+K  +    L+  + S  + PD+ TY+ LI+ FC +G++     +
Sbjct: 196 PNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDL 255

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++     P+  TF+ LI G C E ++ EA  +   +     K DV TY +L++G C 
Sbjct: 256 FNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCL 315

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A +LF  MA    + GV   PD  +YS + +G CK   VD+A +LF +M  + I
Sbjct: 316 VKQVNKAKSLFNVMA----QRGVT--PDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQI 369

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTY SL+ G C +   + A  L  EM D+G   N++T+N I++ +CKN  +D+A  
Sbjct: 370 FPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIV 429

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  + + G++PD   Y  L++G C  GR++ A+++F  +   G   ++++Y  LING+C
Sbjct: 430 LLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFC 489

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
                +  L++ S+M   G  P  +TY
Sbjct: 490 NKGFFDEGLAMLSKMKDNGCIPNAITY 516


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 138/341 (40%), Positives = 208/341 (60%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ +LR +P+PP +  F  + G L K+KHY TVLSLF+++   G+ P+   +NILINCF
Sbjct: 57  LFNCLLRQNPTPPDM-EFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCF 115

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++G +   F VL +IL+  + PD +T  + IKG C + +I +A     KL A G   D 
Sbjct: 116 CQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQ 175

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y TLINGLC+ G T  AL L   +       G + + D + YSTI D +CK+  V+ A
Sbjct: 176 VSYGTLINGLCKVGETRAALELLRRVD------GKLVQLDVVMYSTIIDSMCKDKNVNDA 229

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L+ +M    I+ ++VTY++LI GFC      +A  LF +M  + + P+V TFN++++ 
Sbjct: 230 FDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDA 289

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G++ EA   L +M++ G++PD   YN+LMDG+CL   VN AK +  +M   G    
Sbjct: 290 FCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTAT 349

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V SY I+ING+CK K ++ A+ L+ EM  K I P V+TYN+
Sbjct: 350 VRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNS 390



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 177/342 (51%), Gaps = 9/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           F +   +L+M   P  +     + G CL    H    L+   +L ++G   D  +Y  LI
Sbjct: 125 FSVLAKILKMGYEPDTITLNTFIKGFCLKGQIH--QALNFHDKLVALGFHLDQVSYGTLI 182

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           N  CK+G       +L R+       D V ++++I  +C +  + +A  L++++ +    
Sbjct: 183 NGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRIS 242

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
            ++ TY+ LI+G C  G    A+ LF +M + N        PD  T++ + D  CKEG V
Sbjct: 243 SNIVTYSALISGFCIVGKLKDAIGLFNKMTSEN------INPDVYTFNILVDAFCKEGRV 296

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            +AK     M  + I PD+VTY SL+ G+C  N+ N AK +   M  +GV   V ++N++
Sbjct: 297 KEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIV 356

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +N  CK   +D+A +L + M    + P+   YN+L+DG C +GR++ A EL   M   G 
Sbjct: 357 INGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQ 416

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             D+ +Y  +++  CKN  ++ A++L  ++  +GIRP + TY
Sbjct: 417 QPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTY 458



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 166/307 (54%), Gaps = 6/307 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           + LF ++ S  + PD+YT+NIL++ FCK GRV      L  +++    PD VT+ SL+ G
Sbjct: 265 IGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDG 324

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
            C  + +  A ++   +   G    V +Y  +ING C+      A+ LF+EM +      
Sbjct: 325 YCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQ---- 380

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
               P+ ITY+++ DGLCK G +  A EL   M D    PD++TY+S++   C  +  ++
Sbjct: 381 --IFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDK 438

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  L I++ DQG++PN+ T+ ++++ LCK G++++A  + E ++  G     + Y  ++ 
Sbjct: 439 AIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQ 498

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           GFC  G  + A  L   M+ N C+ D  +Y I+I       E + A  L  EM+++G+  
Sbjct: 499 GFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLY 558

Query: 337 TVVTYNT 343
           + + Y +
Sbjct: 559 SFLEYGS 565



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 168/323 (52%), Gaps = 6/323 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K       L L +R++   +  D+  Y+ +I+  CK   V+  F +   +
Sbjct: 177 SYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEM 236

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    + + VT+++LI G C   ++ +A  LF K+ +    PDV+T+  L++  C+ G  
Sbjct: 237 VSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRV 296

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A N    M           KPD +TY+++ DG C    V+ AK +   M    +   V
Sbjct: 297 KEAKNGLAMMMKQG------IKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATV 350

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            +Y  +I GFC     ++A  LF EM  + + PNV+T+N +++ LCK+G++  A  L++L
Sbjct: 351 RSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDL 410

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M   G +PD   Y++++D  C    V++A  L + ++  G   ++++Y ILI+G CK   
Sbjct: 411 MHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGR 470

Query: 319 IEGALSLYSEMLSKGIRPTVVTY 341
           +E A +++ ++L KG   TV TY
Sbjct: 471 LEDARNIFEDLLVKGYNLTVNTY 493



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 141/353 (39%), Gaps = 87/353 (24%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S+NI+     K K  D  + LFK ++   +FP++ TYN LI+  CK GR+S    ++ 
Sbjct: 350 VRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELID 409

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI------- 129
            +      PD +T++S++  LC    + +A AL  KL+  G +P+++TYT LI       
Sbjct: 410 LMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGG 469

Query: 130 ----------------------------NGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
                                        G C  G    AL+L  +M + +      C P
Sbjct: 470 RLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNS------CIP 523

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA------ND-- 213
           DAITY  I   L  +   DKA++L  +M    +    + Y S    F  A      ND  
Sbjct: 524 DAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSL 583

Query: 214 --------WNEAKCLF-----------IEMMDQGVQ-PNVVTFNVIMNELCKNGKMDEAS 253
                    N AK L              M D+ V+ P+V+ ++      C   K     
Sbjct: 584 QCTSSQESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYST-----CDWSKQ---- 634

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
                    G   D + Y  ++ GFC  G  + +  L   ME NGC+ D  +Y
Sbjct: 635 ---------GYILDVNTYTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAVTY 678



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 1/179 (0%)

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           ++ST T        VD A  LF  +  +N  P  + +  ++     +  ++    LF +M
Sbjct: 38  SFSTSTTFHNNNDVVD-AVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKM 96

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
             +G++PN V FN+++N  C+ G +  A  +L  ++++G  PD    NT + GFCL G++
Sbjct: 97  EYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQI 156

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++A      + + G   D  SYG LING CK  E   AL L   +  K ++  VV Y+T
Sbjct: 157 HQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYST 215



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 118/287 (41%), Gaps = 42/287 (14%)

Query: 10  MHP--SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           MH     P + +++ +   L KN   D  ++L  +L   G+ P++YTY ILI+  CK GR
Sbjct: 411 MHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGR 470

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +   +L   +     T+T +I+G C+     EA +L +K++   C PD  TY  
Sbjct: 471 LEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEI 530

Query: 128 LINGLCRTGHTIVALNLFEEMAN----------GNGEFGVVCKPDAITYSTITDGLCKEG 177
           +I  L        A  L  EM            G+     +  P     +        + 
Sbjct: 531 IICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQE 590

Query: 178 FVDKAKELFLK-----------MKDENIN-PDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
             + AK L  +           M+D+++  P V+ Y++         DW++         
Sbjct: 591 SGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTC--------DWSK--------- 633

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            QG   +V T+ V++   C +G  DE+  LL  M   G  PDA  Y+
Sbjct: 634 -QGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAVTYD 679


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 138/313 (44%), Positives = 191/313 (61%), Gaps = 7/313 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ +L MHP PP +  F  L   +AK KHY TVLSL  +++S G+ P++YT NILIN FC
Sbjct: 33  FNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFC 91

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV   F VL +IL+    PD  TFT+LI+GLC E +I EA  LF K+   G +P+V 
Sbjct: 92  HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVV 151

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+ G+T  A+ L   M  GN      C+PD + Y++I D LCK+  V +A 
Sbjct: 152 TYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCKDRQVTEAF 205

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+PD+ TYTSL+   C   +W     L  +M++  + P+VV F+ +++ L
Sbjct: 206 NLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL 265

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  ++++MIQ GV PD   Y TLMDG CL   ++ A ++F  M   G   DV
Sbjct: 266 CKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDV 325

Query: 304 FSYGILINGYCKN 316
            SY  LIN   K+
Sbjct: 326 ISYTTLINAGKKD 338


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  273 bits (698), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 146/340 (42%), Positives = 199/340 (58%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M P PPP   FN +   L  NKHY TV+SLFK+    G+ PDL T +ILINCFC
Sbjct: 45  FNLMLLMRP-PPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFC 103

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
               ++  F V   IL+  F P+A+T  +LIKGLC    I +A     +L A G + D  
Sbjct: 104 HQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQV 163

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+TG T     L  ++       G   KPD + Y+TI + LCK   +  A 
Sbjct: 164 SYGTLINGLCKTGETKAVARLLRKLE------GHSVKPDVVMYNTIINSLCKNKLLGDAC 217

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +++ +M  + I+PDVVTYT+LI GFC      EA  L  EM  + + PNV TFN++++ L
Sbjct: 218 DVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDAL 277

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K GKM EA  LL +M++  ++PD   YN+L+DG+ L   V  AK +F SM   G   DV
Sbjct: 278 SKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDV 337

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             Y  +ING CK K ++ A+SL+ EM  K + P +VTYN+
Sbjct: 338 QCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNS 377



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 167/327 (51%), Gaps = 6/327 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           L  H   P V  +N +   L KNK       ++  +   G+ PD+ TY  LI+ FC MG 
Sbjct: 188 LEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGH 247

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +   F +L  +      P+  TF  LI  L  E ++ EA  L   +     KPDVFTY +
Sbjct: 248 LKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNS 307

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+G         A  +F  MA    + GV   PD   Y+ + +GLCK   VD+A  LF 
Sbjct: 308 LIDGYFLVDEVKHAKYVFYSMA----QRGVT--PDVQCYTNMINGLCKTKMVDEAMSLFE 361

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +MK +N+ PD+VTY SLI G C  +    A  L   M +QG+QP+V ++ ++++ LCK+G
Sbjct: 362 EMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSG 421

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           ++++A  + + ++  G   +   Y  L++  C  G  + A +L   ME  GCM D  ++ 
Sbjct: 422 RLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFD 481

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGI 334
           I+I    +  E + A  +  EM+++G+
Sbjct: 482 IIIRALFEKDENDKAEKILREMIARGL 508



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 163/324 (50%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K      V  L ++L    + PD+  YN +IN  CK   +     V   +
Sbjct: 164 SYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEM 223

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +PD VT+T+LI G C    + EA +L  +++     P+V T+  LI+ L + G  
Sbjct: 224 IVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKM 283

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  L   M           KPD  TY+++ DG      V  AK +F  M    + PDV
Sbjct: 284 KEAKILLAVMMKA------CIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDV 337

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
             YT++I G C     +EA  LF EM  + + P++VT+N +++ LCKN  ++ A  L + 
Sbjct: 338 QCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKR 397

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + G++PD   Y  L+DG C +GR+  AKE+F  + + G   +V +Y +LIN  CK   
Sbjct: 398 MKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGF 457

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
            + AL L S+M  KG  P  VT++
Sbjct: 458 FDEALDLKSKMEDKGCMPDAVTFD 481



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 149/288 (51%), Gaps = 6/288 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L        H     SL   +    + P++ T+NILI+   K G++    ++
Sbjct: 230 PDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKIL 289

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++++C  PD  T+ SLI G      +  A  +F  +   G  PDV  YT +INGLC+
Sbjct: 290 LAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCK 349

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A++LFEEM + N        PD +TY+++ DGLCK   +++A  L  +MK++ I
Sbjct: 350 TKMVDEAMSLFEEMKHKN------MIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGI 403

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV +YT L+ G C +    +AK +F  ++ +G   NV  + V++N LCK G  DEA  
Sbjct: 404 QPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALD 463

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L   M   G  PDA  ++ ++         ++A+++   M + G +++
Sbjct: 464 LKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGLLKE 511



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 94/187 (50%), Gaps = 7/187 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M +   +P   C  N++ G L K K  D  +SLF+ +    + PD+ TYN LI+  
Sbjct: 324 VFYSMAQRGVTPDVQCYTNMING-LCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGL 382

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK   +     +  R+      PD  ++T L+ GLC   R+ +A  +F +L A G   +V
Sbjct: 383 CKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNV 442

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YT LIN LC+ G    AL+L  +M +        C PDA+T+  I   L ++   DKA
Sbjct: 443 HAYTVLINRLCKAGFFDEALDLKSKMEDKG------CMPDAVTFDIIIRALFEKDENDKA 496

Query: 183 KELFLKM 189
           +++  +M
Sbjct: 497 EKILREM 503


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 138/341 (40%), Positives = 208/341 (60%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F++++ M P P  V  FN + G + K KH    +SL K++   G+ P ++T +I INC+
Sbjct: 71  LFNHLINMQPLPS-VIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCY 129

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +G +   F VLG +L+  + P+ +T T+++KGLC    + +A      + A G   D 
Sbjct: 130 CHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDE 189

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y TLINGLC+ G +I A  L +EM       G V KP+ + Y+ I D  CK+    KA
Sbjct: 190 VCYGTLINGLCKIGRSIDAFQLLQEME------GQVVKPNIVIYNMIIDSFCKDELTCKA 243

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++L+LK+ D  I+PD++TYTSLIRGFC    W E K L  EM+++ + PNV TFNV+++ 
Sbjct: 244 RDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDA 303

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ GKM EA  +  LM++ G +PD   +NTL+ G CL G V  A++LF ++   G + D
Sbjct: 304 FCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPD 363

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V+SY ILI GYCK K I+ A+SL++EM  K +   +V Y++
Sbjct: 364 VWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSS 404



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 166/305 (54%), Gaps = 6/305 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L     +   +  V  L   + +  + P++YT+N+LI+ FC+ G++     +
Sbjct: 257 PDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGM 316

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    PD VTF +LI G C    ++EA  LF  +   G  PDV++YT LI G C+
Sbjct: 317 FNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCK 376

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A++LF EM   N         D + YS++ DGLCK G +  A ELF  + ++  
Sbjct: 377 CKRIDEAVSLFNEMRCKNMVL------DIVLYSSLIDGLCKSGRISYAWELFSTINNDGP 430

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V+TY  LI  FC   D +    LF  M  +G+ P V+T+N+++N  CK+ ++ EA  
Sbjct: 431 PPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMN 490

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL +M    + PD+  YN+L DG C +GR++ A ELF  M   G   DV +Y +L++ +C
Sbjct: 491 LLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFC 550

Query: 315 KNKEI 319
           K +++
Sbjct: 551 KAQDV 555



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N++     K++       L+ ++  +G+ PD+ TY  LI  FC+ G+      +
Sbjct: 222 PNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQL 281

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++     P+  TF  LI   C + +++EA  +F  +   G +PD+ T+ TLI+G C 
Sbjct: 282 MCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCL 341

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+ + A  LF+ +     E G++  PD  +Y+ +  G CK   +D+A  LF +M+ +N+
Sbjct: 342 HGNVLEARKLFDTVF----ERGIL--PDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNM 395

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D+V Y+SLI G C +   + A  LF  + + G  PNV+T+N++++  CK   +D    
Sbjct: 396 VLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIE 455

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L +LM   G+ P    YN L++G+C + R+  A  L   M+S     D  +Y  L +G C
Sbjct: 456 LFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLC 515

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+  I  A  L+  M   G    V TYN 
Sbjct: 516 KSGRISDAWELFKVMHVGGPPVDVATYNV 544



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 63/122 (51%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++NIL     K +  D  + LFK +   GL P + TYNILIN +CK  R+     
Sbjct: 431 PPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMN 490

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      PD++T+ SL  GLC   RI +A  LF  +   G   DV TY  L++  C
Sbjct: 491 LLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFC 550

Query: 134 RT 135
           + 
Sbjct: 551 KA 552



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A  LF  + +    P V+ + ++I           A  L  +M+ +GV P++ T ++
Sbjct: 65  IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
            +N  C  G+M  A  +L ++++ G +P+     T+M G C+ G V +A +   ++ + G
Sbjct: 125 WINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQG 184

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            + D   YG LING CK      A  L  EM  + ++P +V YN
Sbjct: 185 MLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYN 228


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 138/342 (40%), Positives = 210/342 (61%), Gaps = 9/342 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAK--NKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           F+++LR  P+   +  FN + G L K  N HY T +SL +RL   G+ PD++T+NILINC
Sbjct: 54  FNHLLRTKPTSS-IIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINC 112

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +C M  ++  F ++ +IL+  + PD +TF +LIKGLC   ++ EA      + A G   D
Sbjct: 113 YCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLD 172

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            F+Y TLINGLC+ G T  AL +  ++       G + K + + Y+TI D LCK   V  
Sbjct: 173 QFSYGTLINGLCKIGETRTALQMLRKID------GKLVKINVVMYNTIIDSLCKHKLVID 226

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A EL+ +M  + I+PDVVT+++LI GFC      EA  LF EM+ + + P+  TFN++++
Sbjct: 227 AYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVD 286

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G +  A  +L +M++ GV P+   Y++LMDG+CL  +VN+AK +  ++   G   
Sbjct: 287 ALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAP 346

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  SY  +ING+CK K ++ ALSL+++M  KGI P  VTYN+
Sbjct: 347 NAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNS 388



 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 176/342 (51%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +   +L+M   P  + +FN L   L  N      L     + ++G   D ++Y  LIN
Sbjct: 123 FSMMAKILKMGYEPDTI-TFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLIN 181

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+G       +L +I       + V + ++I  LC    +++A  L++++ A    P
Sbjct: 182 GLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISP 241

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV T++ LI G C  G    A  LF EM   N        PD  T++ + D LCKEG + 
Sbjct: 242 DVVTFSALIYGFCIVGQLEEAFGLFREMVLKN------INPDYYTFNILVDALCKEGNLK 295

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            AK + + M  E + P+VVTY+SL+ G+C  N  N+AK +   +   G  PN  ++  ++
Sbjct: 296 GAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMI 355

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N  CK   +DEA  L   M   G+ PD   YN+L+DG C +GR++ A EL   M  NG  
Sbjct: 356 NGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQP 415

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++F+Y  LI+  CKN  ++ A++L  ++  +GI+P + T+N
Sbjct: 416 ANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFN 457



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 171/327 (52%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N +   L K+K       L+ ++ +  + PD+ T++ LI  FC +G++   F +  
Sbjct: 208 VVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFR 267

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     PD  TF  L+  LC E  +  A  +   +   G  P+V TY++L++G C   
Sbjct: 268 EMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVN 327

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
                +N  + + N   + G    P+A +Y T+ +G CK   VD+A  LF  M+ + I P
Sbjct: 328 Q----VNKAKHVLNTISQMGAA--PNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAP 381

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTY SLI G C +   + A  L  EM D G   N+ T+N +++ LCKN  +D+A  L+
Sbjct: 382 DKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALV 441

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + +   G++PD   +N L+ G C  GR+  A+++F  + S G   + ++Y I++NG CK 
Sbjct: 442 KKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKE 501

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
              + A +L S+M   GI P  VTY T
Sbjct: 502 GLFDEAEALLSKMDDNGIIPDAVTYET 528



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 166/320 (51%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L          +    LF+ +    + PD YT+NIL++  CK G +     +
Sbjct: 241 PDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNM 300

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    P+ VT++SL+ G C  +++ +A  +   +   G  P+  +Y T+ING C+
Sbjct: 301 LVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCK 360

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL+LF +M     +F  +  PD +TY+++ DGLCK G +  A EL  +M D   
Sbjct: 361 IKMVDEALSLFNDM-----QFKGIA-PDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQ 414

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++ TY  LI   C  +  ++A  L  ++ DQG+QP++ TFN+++  LCK G++  A  
Sbjct: 415 PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQD 474

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + ++  G   +A  YN +++G C  G  + A+ L   M+ NG + D  +Y  LI    
Sbjct: 475 VFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALF 534

Query: 315 KNKEIEGALSLYSEMLSKGI 334
              E E A  L  EM+++ +
Sbjct: 535 HKDENEKAEKLLREMIARDV 554


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/340 (40%), Positives = 212/340 (62%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ +L ++P+PP +  F  + G L K   Y T +SL + +   G+  DL T+NILINCF 
Sbjct: 44  FNRILNINPTPP-IFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFS 102

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++G     F V   IL+  + P+A+T T+LIKGLC + +I +A     K+ A G   +  
Sbjct: 103 QLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKV 162

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            Y TLINGLC+ G T  AL L   +       G + +P+ + Y+TI D +CK   V++A 
Sbjct: 163 CYGTLINGLCKVGQTSAALQLLRRVD------GKLVQPNVVMYNTIIDSMCKVKLVNEAF 216

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M  + I+PDVVTY++LI GFC     N+A  LF +M+ + + P+V TF+++++  
Sbjct: 217 DLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGF 276

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G++ EA  +L +M++ G++PD   Y +LMDG+CL  +VN+AK +F +M   G   +V
Sbjct: 277 CKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANV 336

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY I+ING+CK K+++ A++L+ EM  K I P VVTYN+
Sbjct: 337 QSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNS 376



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 177/327 (54%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   + K K  +    L+  + S G+ PD+ TY+ LI+ FC +G+++    +
Sbjct: 194 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGL 253

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     PD  TF+ L+ G C E R+ EA  +   +   G KPDV TY +L++G C 
Sbjct: 254 FNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCL 313

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  MA G    GV    +  +Y+ + +G CK   VD+A  LF +M  +NI
Sbjct: 314 VKQVNKAKSIFNTMAQG----GVTA--NVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNI 367

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY SLI G C +   + A  L  EM D+GV  + +T+N I++ LCKN ++D+A  
Sbjct: 368 IPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 427

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M   G++PD   Y  L+DG C  GR+  A+ +F  +   G    V++Y ++I G+C
Sbjct: 428 LLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFC 487

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
            N   + AL+L S+M   G  P   TY
Sbjct: 488 DNDLFDKALALLSKMEDNGCIPNAKTY 514



 Score =  203 bits (517), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 181/342 (52%), Gaps = 9/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           F +F  +L+    P  +    ++ G CL    H    L    ++ ++G   +   Y  LI
Sbjct: 111 FSVFANILKKGYEPNAITLTTLIKGLCLKGQIH--QALHFHDKVVALGFHLNKVCYGTLI 168

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           N  CK+G+ S    +L R+      P+ V + ++I  +C    + EA  L++++ + G  
Sbjct: 169 NGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGIS 228

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PDV TY+ LI+G C  G    A+ LF +M +          PD  T+S + DG CKEG V
Sbjct: 229 PDVVTYSALISGFCILGKLNDAIGLFNKMISEE------INPDVYTFSILVDGFCKEGRV 282

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            +AK +   M  + I PDVVTY SL+ G+C     N+AK +F  M   GV  NV ++N++
Sbjct: 283 KEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIM 342

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +N  CK  K+DEA  L + M    + PD   YN+L+DG C +G+++ A +L   M   G 
Sbjct: 343 INGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGV 402

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             D  +Y  +++  CKN +++ A++L ++M  +GI+P + TY
Sbjct: 403 PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTY 444



 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 176/325 (54%), Gaps = 7/325 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           VC +  L   L K       L L +R++   + P++  YN +I+  CK+  V+  F +  
Sbjct: 162 VC-YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 220

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++    +PD VT+++LI G C   ++ +A  LF K+ +    PDV+T++ L++G C+ G
Sbjct: 221 EMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEG 280

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A N+   M           KPD +TY ++ DG C    V+KAK +F  M    +  
Sbjct: 281 RVKEAKNVLAMMMKQG------IKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTA 334

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +V +Y  +I GFC     +EA  LF EM  + + P+VVT+N +++ LCK+GK+  A +L+
Sbjct: 335 NVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLV 394

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M   GV  D   YN+++D  C   +V++A  L   M+  G   D+++Y ILI+G CK 
Sbjct: 395 DEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKG 454

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
             ++ A +++ ++L KG   TV TY
Sbjct: 455 GRLKDAQNIFEDLLVKGYNITVYTY 479



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 172/320 (53%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L          +  + LF ++ S  + PD+YT++IL++ FCK GRV     V
Sbjct: 229 PDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNV 288

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD VT+ SL+ G C   ++ +A ++F  +   G   +V +Y  +ING C+
Sbjct: 289 LAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCK 348

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+NLF+EM   N        PD +TY+++ DGLCK G +  A +L  +M D  +
Sbjct: 349 IKKVDEAMNLFKEMHCKN------IIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGV 402

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY S++   C  +  ++A  L  +M D+G+QP++ T+ ++++ LCK G++ +A  
Sbjct: 403 PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQN 462

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E ++  G       Y  ++ GFC     ++A  L   ME NGC+ +  +Y I+I    
Sbjct: 463 IFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLF 522

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           +  E + A  L  EM+++G+
Sbjct: 523 EKDENDMAEKLLREMIARGL 542


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  271 bits (692), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 140/342 (40%), Positives = 205/342 (59%), Gaps = 7/342 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            +F  ++ MHP P  V  FN++ G + K KHY T +SL K++   G+ P + T +ILINC
Sbjct: 64  ALFTRLITMHPLPS-VVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINC 122

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +C +G +   F VLG +L+  +  +A+T T+++KGLC    + +A      + A G   D
Sbjct: 123 YCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLD 182

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TY TLINGLC+ G T  A  L  +M       G V +P+ + Y+ I DGLCK+G V +
Sbjct: 183 EVTYGTLINGLCKIGLTREAFELLHKME------GQVVRPNVVIYNMIVDGLCKDGLVTE 236

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A++L+  +    I+PDV TYT LI GFC    W E   L  +M+D+ V  NV T+N++++
Sbjct: 237 ARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILID 296

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G + +A  +  LMI+ G RPD   +NTLM G+CL   V  A++LF +    G   
Sbjct: 297 ALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITP 356

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           DV+SY ILI GYCKN  I+ ALSL+++M  K + P +VTY++
Sbjct: 357 DVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSS 398



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 165/331 (49%), Gaps = 41/331 (12%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G   D  TY  LIN  CK+G     F +L ++      P+ V +  ++ GLC +  + EA
Sbjct: 178 GFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEA 237

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L++ +   G  PDVFTYT LI+G C  G       L  +M + N    V       TY
Sbjct: 238 RDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVY------TY 291

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + + D LCK+G + KA ++   M +    PD+VT+ +L+ G+C  ND  EA+ LF    +
Sbjct: 292 NILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAE 351

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G+ P+V ++N+++   CKN ++DEA  L   M    + P+   Y++L+DG C +GR++ 
Sbjct: 352 CGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISY 411

Query: 287 AKELFVSMESNG---------CMRD--------------------------VFSYGILIN 311
           A ELF ++   G          M D                          V SY ILIN
Sbjct: 412 AWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILIN 471

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           GYCK+K I+ A++L+ EM  + + P  VTYN
Sbjct: 472 GYCKSKRIDEAMNLFEEMHRRNLVPDSVTYN 502



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/269 (35%), Positives = 149/269 (55%), Gaps = 6/269 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           ++YTYNILI+  CK G +     +   ++     PD VTF +L+ G C  + ++EA  LF
Sbjct: 287 NVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLF 346

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
                 G  PDV++Y  LI G C+      AL+LF +M            P+ +TYS++ 
Sbjct: 347 DTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKK------LAPNIVTYSSLI 400

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           DGLCK G +  A ELF  + D   +P+V+TY  ++   C     ++A  LF  M ++G+ 
Sbjct: 401 DGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLT 460

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PNV ++N+++N  CK+ ++DEA  L E M +  + PD+  YN L+DG C +GR++ A EL
Sbjct: 461 PNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWEL 520

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEI 319
           F  M   G   DV +Y IL + + K + +
Sbjct: 521 FNVMHDGGPPVDVITYNILFDAFSKIQHV 549



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 172/328 (52%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N++   L K+        L+  +   G+ PD++TY  LI+ FC +G+      +
Sbjct: 216 PNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRL 275

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++      +  T+  LI  LC +  + +A  +   +   G +PD+ T+ TL++G C 
Sbjct: 276 LCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCL 335

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A  LF+  A    E G+   PD  +Y+ +  G CK   +D+A  LF KM  + +
Sbjct: 336 YNDVVEARKLFDTFA----ECGIT--PDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKL 389

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++VTY+SLI G C +   + A  LF  + D G  PNV+T+N++++ LCK   +D+A  
Sbjct: 390 APNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIE 449

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L  LM + G+ P+ S YN L++G+C + R++ A  LF  M     + D  +Y  LI+G C
Sbjct: 450 LFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLC 509

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K+  I  A  L++ M   G    V+TYN
Sbjct: 510 KSGRISHAWELFNVMHDGGPPVDVITYN 537



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 2/170 (1%)

Query: 175 KEGF--VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           K GF  +D A  LF ++   +  P VV +  ++        +  A  L  +M  +G+ P+
Sbjct: 53  KSGFDAIDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPS 112

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           +VT ++++N  C  G M  A  +L ++++ G + +A    T+M G C+ G V +A E   
Sbjct: 113 IVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHD 172

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           S+ + G + D  +YG LING CK      A  L  +M  + +RP VV YN
Sbjct: 173 SVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYN 222



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 1/128 (0%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           PSP  V ++NI+   L K +  D  + LF  +   GL P++ +YNILIN +CK  R+   
Sbjct: 424 PSPN-VITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEA 482

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +   + R    PD+VT+  LI GLC   RI  A  LF  +   G   DV TY  L + 
Sbjct: 483 MNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDA 542

Query: 132 LCRTGHTI 139
             +  H I
Sbjct: 543 FSKIQHVI 550


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  270 bits (690), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 151/408 (37%), Positives = 217/408 (53%), Gaps = 76/408 (18%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M+R       + SFN+L G LAK KHY  V SL+K+++  GL P+ +T NILINC C
Sbjct: 84  FDLMMR------SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLC 137

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV  G   +  I+R  + PD VT+TSLIKGLC E RI EA  LF +++  GC P+V 
Sbjct: 138 NVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVV 197

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLI GLCRTG+  +AL L +EM NG   + + CKP+  +Y+ I D LCK G   +AK
Sbjct: 198 TYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAK 257

Query: 184 ELFLKMKDENINPDVV-----------------------------------TYTSLIRGF 208
            LF +M D+ + PDVV                                   T+TSLI GF
Sbjct: 258 RLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGF 317

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C   D + AK LF+ M  +G +P+V+++ V++   CK   ++EA +L   M+++G  PD 
Sbjct: 318 CLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDM 377

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSME-------------------SNGCM--------- 300
             +  L+ G  L G+V  AK+LF  ++                    NGC+         
Sbjct: 378 KTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNE 437

Query: 301 -------RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                   D+ S+  LI+G CK +++E A  L+ ++  +G++P VVTY
Sbjct: 438 LKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTY 485



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+NI+   L K   +     LF  +   G+ PD+ T++ LI+  CK G V      
Sbjct: 235 PNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKF 294

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD  TFTSLI+G C    +  A  LF  + + G +PDV +YT LI G C+
Sbjct: 295 LETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCK 354

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T +   A+ L+ EM        V   PD  T+  +  GL   G V  AK+LF  +K   +
Sbjct: 355 TFNVEEAMKLYNEM------LRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAV 408

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++   +  + G C      EA  LF E+    ++ ++ +FN +++ LCK  K++ A  
Sbjct: 409 PKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWE 468

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E + Q G++PD   Y  +++GFC  G+V+ A  LF  ME NGC  ++ +Y  L++G+ 
Sbjct: 469 LFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFY 528

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           KN ++E  + L  +M+ K +      Y
Sbjct: 529 KNNKLEEVVKLLHKMIQKDVSLAASIY 555



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 113/262 (43%), Gaps = 47/262 (17%)

Query: 88  VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           ++F  L+  L       +  +L+ K+   G  P+ FT   LIN LC        L+    
Sbjct: 92  ISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLS---A 148

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           MA                      G+ + G++                PDVVTYTSLI+G
Sbjct: 149 MA----------------------GIMRRGYI----------------PDVVTYTSLIKG 170

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ------ 261
            C  +  +EA  LFI M   G  PNVVT+  ++  LC+ G ++ A +L + M+       
Sbjct: 171 LCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYA 230

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
           I  +P+   YN ++D  C  G+   AK LF  M   G   DV ++  LI+  CK   +  
Sbjct: 231 INCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIE 290

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A      M+ +GI P + T+ +
Sbjct: 291 AKKFLETMMLRGIVPDLFTFTS 312



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 117/243 (48%), Gaps = 6/243 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+ +L     K  + +  + L+  +  +G +PD+ T+ +L+      G+V     +
Sbjct: 340 PDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKL 399

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G +       +    +  + GLC    + EA  LF +L+++  K D+ ++  LI+GLC+
Sbjct: 400 FGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCK 459

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LFE+++          +PD +TY  + +G CK G VD A  LF  M++   
Sbjct: 460 ARKLETAWELFEKLSQEG------LQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGC 513

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+++TY++L+ GF   N   E   L  +M+ + V      + ++ + + K+ K  E   
Sbjct: 514 TPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDEKCREWLD 573

Query: 255 LLE 257
           +L+
Sbjct: 574 ILQ 576



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 6/170 (3%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +++ H  P  +   ++    L KN      + LF  L S  +  D+ ++N LI+  CK  
Sbjct: 402 VVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKAR 461

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++   + +  ++ +    PD VT+  +I G C   ++  A  LF  +   GC P++ TY+
Sbjct: 462 KLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYS 521

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
            L++G  +       + L  +M   +          A  Y+ + D + K+
Sbjct: 522 ALLHGFYKNNKLEEVVKLLHKMIQKDVSLA------ASIYTIVEDMVSKD 565



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 49/112 (43%)

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++++FN+++  L K     +   L + M   G+ P+    N L++  C   RV       
Sbjct: 90  SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAM 149

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +   G + DV +Y  LI G C    I  A  L+  M   G  P VVTY T
Sbjct: 150 AGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGT 201


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/340 (41%), Positives = 198/340 (58%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ MLR HP PPP+  F+ L G + +  HY T +SLF +L+S G+ P + T  ILINC+C
Sbjct: 43  FNRMLRKHP-PPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYC 101

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
               +S  F +LG IL+  F P+ VTF +LI G C    + +A A    L A G   D F
Sbjct: 102 HQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEF 161

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y +LINGLC+ G T  AL L ++M         + +P+ ITYST+ DGLCK+  +  A 
Sbjct: 162 SYGSLINGLCKNGQTRDALQLLQKMEED------LVRPNLITYSTVIDGLCKDRLIADAL 215

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF  +    I  DVV Y SLI G C    W EA  L   M+   + P+  TFN++++ L
Sbjct: 216 RLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDAL 275

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G++ EA  +  +M++ G +PD   YN LM+GFCL+  V+ A+ELF  M   G   DV
Sbjct: 276 CKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDV 335

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y +LINGYCK   ++ A+ L+ E+  K + P + TYN+
Sbjct: 336 LNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNS 375



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 177/329 (53%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L      N      ++    L + G   D ++Y  LIN  CK G+      +
Sbjct: 123 PNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQL 182

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      P+ +T++++I GLC +  I +A  LF+ + + G   DV  Y +LI+G C 
Sbjct: 183 LQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCS 242

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L   M  GN        PD  T++ + D LCKEG + +A+ +F  M     
Sbjct: 243 VGQWREATRLLTMMVRGN------INPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGE 296

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY +L+ GFC +N+ +EA+ LF  M+ +G++P+V+ +NV++N  CK   +DEA  
Sbjct: 297 KPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMV 356

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + +    + P+ + YN+L+DG C  GR++  +EL   M   G   D+ +Y I ++ +C
Sbjct: 357 LFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFC 416

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+K  E A+SL+ +++ +GI P    Y+ 
Sbjct: 417 KSKPYEKAISLFRQIV-QGIWPDFYMYDV 444



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 173/329 (52%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ +   L K++     L LF  + S G+  D+  YN LI+  C +G+      +
Sbjct: 193 PNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRL 252

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R    PD  TF  L+  LC E RI+EA  +F  +   G KPD+ TY  L+ G C 
Sbjct: 253 LTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCL 312

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           + +   A  LF  M     E      PD + Y+ + +G CK   VD+A  LF +++ +N+
Sbjct: 313 SNNVSEARELFNRMVKRGLE------PDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNL 366

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ TY SLI G C     +  + L  EM D+G  P++VT+N+ ++  CK+   ++A  
Sbjct: 367 VPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAIS 426

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   ++Q G+ PD  +Y+ +++ FC   ++  A+E    +  +GC  +V +Y I+IN  C
Sbjct: 427 LFRQIVQ-GIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALC 485

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+   + A++L S+M      P  VT+ T
Sbjct: 486 KDCSFDEAMTLLSKMDDNDCPPDAVTFET 514



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 165/321 (51%), Gaps = 13/321 (4%)

Query: 17  VCSFN-ILFGC--LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           V ++N ++ GC  + + +    +L++  R N   + PD YT+NIL++  CK GR+     
Sbjct: 230 VVAYNSLIHGCCSVGQWREATRLLTMMVRGN---INPDDYTFNILVDALCKEGRIVEAQG 286

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   +++    PD VT+ +L++G C  + + EA  LF ++   G +PDV  Y  LING C
Sbjct: 287 VFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYC 346

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A+ LF+E+   N        P+  TY+++ DGLCK G +   +EL  +M D  
Sbjct: 347 KIDMVDEAMVLFKEIRCKN------LVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRG 400

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +PD+VTY   +  FC +  + +A  LF +++ QG+ P+   ++VI+   CK  K+  A 
Sbjct: 401 QSPDIVTYNIFLDAFCKSKPYEKAISLFRQIV-QGIWPDFYMYDVIVENFCKGEKLKIAE 459

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             L+ ++  G  P+   Y  +++  C     + A  L   M+ N C  D  ++  +I   
Sbjct: 460 EALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGAL 519

Query: 314 CKNKEIEGALSLYSEMLSKGI 334
            +  E + A  L  EM+ +G+
Sbjct: 520 QERNETDKAEKLRLEMIERGL 540



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 88/165 (53%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD     F +M  ++  P +  +  L+        +  A  LF ++  +G+ P++ T  +
Sbjct: 36  VDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTI 95

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C    +  A  LL  ++++G +P+   +NTL++GFC+ G V++A    + + + G
Sbjct: 96  LINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKG 155

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              D FSYG LING CKN +   AL L  +M    +RP ++TY+T
Sbjct: 156 YPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYST 200



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NI      K+K Y+  +SLF+++   G++PD Y Y++++  FCK  ++      
Sbjct: 403 PDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYMYDVIVENFCKGEKLKIAEEA 461

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     P+  T+T +I  LC +    EA  L +K+    C PD  T+ T+I  L  
Sbjct: 462 LQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQE 521

Query: 135 TGHTIVALNLFEEM 148
              T  A  L  EM
Sbjct: 522 RNETDKAEKLRLEM 535


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 139/340 (40%), Positives = 206/340 (60%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ MLRM P PPP+  F  + G L K KHY  V+ LF+R+   G+  +  T NILIN +C
Sbjct: 37  FNRMLRMRP-PPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYC 95

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + +++  F V  +IL+  + PD +T+T+LI+GLC   ++ E+     +L + G K D  
Sbjct: 96  HLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHV 155

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+ G T  AL L  ++       G +C+PD + Y+TI DGLCK+  V  A 
Sbjct: 156 SYGTLINGLCKIGQTGPALRLLRKIE------GEICRPDVVMYNTIIDGLCKDKLVRDAF 209

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M ++ + P+VVTYTSLI GFC     ++A  L  EM+ + V PNV TFN +++ L
Sbjct: 210 DLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGL 269

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GKM EA  L+ +M++ GV PD   YN LMDG+ L     +AK +F  M   G   DV
Sbjct: 270 CKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDV 329

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY ++I+G  K K ++ A+ L+  M ++ + P VV Y++
Sbjct: 330 HSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSS 369



 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 179/329 (54%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L K+K       L+  +    +FP++ TY  LI  FC +G++   F +
Sbjct: 187 PDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGL 246

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+  TF +L+ GLC E ++ EA +L   +   G  PDVFTY  L++G   
Sbjct: 247 LNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFL 306

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A N+F  MA    + GV C  D  +YS +  GL K   +D+A +LF  M++EN+
Sbjct: 307 VKEAGKAKNVFNIMA----QMGVTC--DVHSYSVMISGLSKMKMLDEAMDLFEGMRNENV 360

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV Y+SLI G C +   N A     EM D+G  PNV+T+  +++ LCK+ ++D+A  
Sbjct: 361 IPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIA 420

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ +   G++ +   YN L+DG C  GR+  A+++F  +   G   DV +Y I+ING C
Sbjct: 421 LLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLC 480

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K    + AL+L S+M  KG  P  + Y T
Sbjct: 481 KESLFDEALTLLSKMEDKGCVPDAIAYET 509



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 114/210 (54%), Gaps = 6/210 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S++++   L+K K  D  + LF+ + +  + PD+  Y+ LI+  CK GR++     + 
Sbjct: 329 VHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVD 388

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P+ +T+TSLI  LC   ++ +A AL  K++  G + +++TY  L++GLC+ G
Sbjct: 389 EMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDG 448

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +F+++             D +TYS + +GLCKE   D+A  L  KM+D+   P
Sbjct: 449 RLTDAQKVFQDLLMKGHNV------DVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVP 502

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           D + Y ++I  F   +  ++A+ L  EM+D
Sbjct: 503 DAIAYETIINAFFEKDMNDKAEKLLREMID 532



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 120/239 (50%), Gaps = 6/239 (2%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           +A   F ++      P +  +  ++  L +T H  + ++LF+ M       G+  + + I
Sbjct: 32  DAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRME----LHGI--QSNYI 85

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T + + +  C    ++ A  +F K+      PD++TYT+LIRG C      E+      +
Sbjct: 86  TLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRL 145

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + QG++ + V++  ++N LCK G+   A RLL  +     RPD  +YNT++DG C    V
Sbjct: 146 VSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLV 205

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A +L+  M       +V +Y  LI G+C   +++ A  L +EM+ K + P V T+NT
Sbjct: 206 RDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNT 264



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 62/129 (48%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           N+A   F  M+     P ++ F  I+  L K         L + M   G++ +    N L
Sbjct: 31  NDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNIL 90

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++ +C   ++N A  +F  +   G   D+ +Y  LI G C N +++ +L+ +  ++S+GI
Sbjct: 91  INSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGI 150

Query: 335 RPTVVTYNT 343
           +   V+Y T
Sbjct: 151 KLDHVSYGT 159


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  266 bits (681), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 139/329 (42%), Positives = 202/329 (61%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           PP+  FN +    AK KHY T +SL  RL   G+ PDL+T NILINCFC MG+++ GF V
Sbjct: 305 PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSV 364

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +IL+  + P  VT  +LIKGLC + ++ +A     KL A G + +  +Y TLING+C+
Sbjct: 365 LAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 424

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A+ L  ++       G + KP+   YSTI D LCK   V +A  LF +M  + I
Sbjct: 425 IGDTRGAIKLLRKID------GRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGI 478

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + DVVTY++LI GFC      EA  L  EM+ + + P+V T+ ++++ L K GK+ EA  
Sbjct: 479 SADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKS 538

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L +M++  V+PD   YNTLM+G+ L   V +A+ +F +M   G   DV +Y ILING+C
Sbjct: 539 VLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFC 598

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+K ++ AL+L+ EM  K + P  VTY++
Sbjct: 599 KSKMVDEALNLFKEMHQKNMVPDTVTYSS 627



 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 158/285 (55%), Gaps = 6/285 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD+ TY IL++   K G+V     VL  +L++C  PD  T+ +L+ G      + +A  +
Sbjct: 515 PDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHV 574

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F  +   G  PDV TYT LING C++     ALNLF+EM   N        PD +TYS++
Sbjct: 575 FNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKN------MVPDTVTYSSL 628

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DGLCK G +    +L  +M+D     DV+TY SLI G C     ++A  LF +M DQG+
Sbjct: 629 VDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGI 688

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +PN  TF ++++ LCK G++ +A  + + ++  G   D  +YN ++ G C  G +  A  
Sbjct: 689 RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALT 748

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +   ME NGC+ +  ++ I+IN   K  E + A  L  +M+++G+
Sbjct: 749 MLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793



 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 175/330 (53%), Gaps = 6/330 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P V  ++ +   L K +       LF  +   G+  D+ TY+ LI  FC +G++    
Sbjct: 443 TKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAI 502

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  ++     PD  T+T L+  L  E ++ EA ++   +     KPDVFTY TL+NG 
Sbjct: 503 GLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGY 562

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
                   A ++F  M+      GV   PD  TY+ + +G CK   VD+A  LF +M  +
Sbjct: 563 LLVYEVKKAQHVFNAMS----LMGVT--PDVHTYTILINGFCKSKMVDEALNLFKEMHQK 616

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N+ PD VTY+SL+ G C +   +    L  EM D+G   +V+T+N +++ LCKNG +D+A
Sbjct: 617 NMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKA 676

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L   M   G+RP+   +  L+DG C  GR+  A+E+F  + + G   DV+ Y ++I G
Sbjct: 677 IALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYG 736

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +CK   +E AL++ S+M   G  P  VT++
Sbjct: 737 HCKQGLLEEALTMLSKMEENGCIPNAVTFD 766



 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/269 (39%), Positives = 160/269 (59%), Gaps = 7/269 (2%)

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL +IL+  + PD VT  +LIKGLC + ++ EA     KL A G + +  +Y TLING+C
Sbjct: 50  VLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVC 109

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R G T  A+    ++       G + KP+   Y+TI D LCK   V +A  LF +M  + 
Sbjct: 110 RIGDTRAAIKFLRKID------GRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKG 163

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I+ +VVTY++LI GFC      EA  L   M+ + + PNV T+N++++ LCK GK+ EA 
Sbjct: 164 ISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAK 223

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L +M++  V+ +   Y+TLMDG+ L   V +A+ +F +M   G   DV SY I+ING+
Sbjct: 224 SVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGF 283

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK K ++ AL+L+ EM+     P ++ +N
Sbjct: 284 CKIKRVDKALNLFKEMILSRF-PPIIQFN 311



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 156/330 (47%), Gaps = 7/330 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   + N L   L         L    +L + G   +  +Y  LIN  C++G       
Sbjct: 60  PPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIK 119

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
            L +I      P+   + ++I  LC    + EA  LF+++   G   +V TY+TLI G C
Sbjct: 120 FLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFC 179

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    AL L   M            P+  TY+ + D LCKEG V +AK +   M    
Sbjct: 180 IVGKLKEALGLLNVMVLKT------INPNVCTYNILVDALCKEGKVKEAKSVLAVMLKAC 233

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  +V+TY++L+ G+    +  +A+ +F  M   GV P+V ++N+++N  CK  ++D+A 
Sbjct: 234 VKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKAL 293

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + MI +   P    +N ++D F      + A  L   +E  G   D+F+  ILIN +
Sbjct: 294 NLFKEMI-LSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCF 352

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C   +I    S+ +++L +G  P+ VT NT
Sbjct: 353 CHMGQITFGFSVLAKILKRGYPPSTVTLNT 382



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 9/295 (3%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P++ TYNIL++  CK G+V     VL  +L++C   + +T+++L+ G      + +A  +
Sbjct: 201 PNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHV 260

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK-PDAITYST 168
           F  +   G  PDV +Y  +ING C+      ALNLF+EM        ++ + P  I ++ 
Sbjct: 261 FNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM--------ILSRFPPIIQFNK 312

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           I D   K      A  L  +++ + I PD+ T   LI  FC+         +  +++ +G
Sbjct: 313 ILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRG 372

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
             P+ VT N ++  LC  G++ +A    + ++  G + +   Y TL++G C  G    A 
Sbjct: 373 YPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAI 432

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +L   ++      +V  Y  +I+  CK + +  A  L+SEM  KGI   VVTY+T
Sbjct: 433 KLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYST 487



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 7/331 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P V  +N +   L K +       LF  +   G+  ++ TY+ LI  FC +G++    
Sbjct: 129 AKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEAL 188

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  ++     P+  T+  L+  LC E ++ EA ++   +     K +V TY+TL++G 
Sbjct: 189 GLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGY 248

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
                   A ++F  M+      GV   PD  +Y+ + +G CK   VDKA  LF +M   
Sbjct: 249 FLVYEVKKAQHVFNAMS----LMGVT--PDVHSYNIMINGFCKIKRVDKALNLFKEMILS 302

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              P ++ +  ++  F     ++ A  L   +  +G+QP++ T N+++N  C  G++   
Sbjct: 303 RF-PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFG 361

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             +L  +++ G  P     NTL+ G CL G+V +A      + + G   +  SY  LING
Sbjct: 362 FSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLING 421

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            CK  +  GA+ L  ++  +  +P V  Y+T
Sbjct: 422 VCKIGDTRGAIKLLRKIDGRLTKPNVEMYST 452



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    P  V ++N L   L KN H D  ++LF ++   G+ P+ +T+ IL++  CK GR
Sbjct: 648 MRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGR 707

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     V   +L   +  D   +  +I G C +  + EA  + +K+   GC P+  T+  
Sbjct: 708 LKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDI 767

Query: 128 LINGLCRTGHTIVALNLFEEM 148
           +IN L +      A  L  +M
Sbjct: 768 IINALFKKDENDKAEKLLRQM 788



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%)

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +  +++ +G  P+ VT N ++  LC  G++ EA    + ++  G + +   Y TL++G C
Sbjct: 50  VLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVC 109

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G    A +    ++      +V  Y  +I+  CK + +  A  L+SEM  KGI   VV
Sbjct: 110 RIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVV 169

Query: 340 TYNT 343
           TY+T
Sbjct: 170 TYST 173


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  266 bits (681), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 130/340 (38%), Positives = 202/340 (59%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+R  P P  V  F+  F  +A+ K ++ VL   K+L   G+  ++YT NI+INCF
Sbjct: 75  LFQEMIRSRPLPSLV-DFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCF 133

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  +    + VLG++++  + PD  TF +LIKGL  E ++ EA  L  ++   GC+PDV
Sbjct: 134 CRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDV 193

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY +++NG+CR+G T +AL+L  +M   N       K D  TYSTI D LC++G +D A
Sbjct: 194 VTYNSIVNGICRSGDTSLALDLLRKMEERN------VKADVFTYSTIIDSLCRDGCIDAA 247

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M+ + I   VVTY SL+RG C A  WN+   L  +M+ + + PNV+TFNV+++ 
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K GK+ EA+ L + MI  G+ P+   YNTLMDG+C+  R++ A  +   M  N C  D
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + ++  LI GYC  K ++  + ++  +  +G+    VTY+
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 176/338 (52%), Gaps = 17/338 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN+L     K         L+K + + G+ P++ TYN L++ +C   R+S    +
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R+  +PD VTFTSLIKG C   R+ +   +F  +   G   +  TY+ L+ G C+
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G   +A  LF+EM +     GV+  PD +TY  + DGLC  G ++KA E+F  ++   +
Sbjct: 416 SGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +  +V YT++I G C      +A  LF  +  +GV+PNV+T+ V+++ LCK G + EA+ 
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN--- 311
           LL  M + G  P+   YNTL+      G +  + +L   M+S G   D  S  ++I+   
Sbjct: 530 LLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLL 589

Query: 312 --------GYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                    YC +K  +    L     S+ IR + +T+
Sbjct: 590 SAMKRLTLRYCLSKGSKSRQDLLELSGSEKIRLSSLTF 627



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 174/342 (50%), Gaps = 8/342 (2%)

Query: 4   FDYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            D + +M        V +++ +   L ++   D  +SLFK + + G+   + TYN L+  
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G+ + G ++L  ++     P+ +TF  L+     E ++ EA  L+ ++   G  P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY TL++G C       A N+ + M          C PD +T++++  G C    VD 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNK------CSPDIVTFTSLIKGYCMVKRVDD 386

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
             ++F  +    +  + VTY+ L++GFC +     A+ LF EM+  GV P+V+T+ ++++
Sbjct: 387 GMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD 446

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LC NGK+++A  + E + +  +     +Y T+++G C  G+V  A  LF S+   G   
Sbjct: 447 GLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKP 506

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +V +Y ++I+G CK   +  A  L  +M   G  P   TYNT
Sbjct: 507 NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNT 548



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 62/140 (44%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V ++ IL   L  N   +  L +F+ L    +   +  Y  +I   CK G+V  
Sbjct: 432 HGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVED 491

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            + +   +      P+ +T+T +I GLC +  + EA  L  K+   G  P+  TY TLI 
Sbjct: 492 AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIR 551

Query: 131 GLCRTGHTIVALNLFEEMAN 150
              R G    +  L EEM +
Sbjct: 552 AHLRDGDLTASAKLIEEMKS 571


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  266 bits (681), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 130/340 (38%), Positives = 202/340 (59%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+R  P P  V  F+  F  +A+ K ++ VL   K+L   G+  ++YT NI+INCF
Sbjct: 75  LFQEMIRSRPLPSLV-DFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCF 133

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  +    + VLG++++  + PD  TF +LIKGL  E ++ EA  L  ++   GC+PDV
Sbjct: 134 CRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDV 193

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY +++NG+CR+G T +AL+L  +M   N       K D  TYSTI D LC++G +D A
Sbjct: 194 VTYNSIVNGICRSGDTSLALDLLRKMEERN------VKADVFTYSTIIDSLCRDGCIDAA 247

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M+ + I   VVTY SL+RG C A  WN+   L  +M+ + + PNV+TFNV+++ 
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K GK+ EA+ L + MI  G+ P+   YNTLMDG+C+  R++ A  +   M  N C  D
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + ++  LI GYC  K ++  + ++  +  +G+    VTY+
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 162/297 (54%), Gaps = 6/297 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN+L     K         L+K + + G+ P++ TYN L++ +C   R+S    +
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R+  +PD VTFTSLIKG C   R+ +   +F  +   G   +  TY+ L+ G C+
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G   +A  LF+EM +     GV+  PD +TY  + DGLC  G ++KA E+F  ++   +
Sbjct: 416 SGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +  +V YT++I G C      +A  LF  +  +GV+PNV+T+ V+++ LCK G + EA+ 
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           LL  M + G  P+   YNTL+      G +  + +L   M+S G   D  S  ++I+
Sbjct: 530 LLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 174/342 (50%), Gaps = 8/342 (2%)

Query: 4   FDYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            D + +M        V +++ +   L ++   D  +SLFK + + G+   + TYN L+  
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G+ + G ++L  ++     P+ +TF  L+     E ++ EA  L+ ++   G  P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY TL++G C       A N+ + M          C PD +T++++  G C    VD 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNK------CSPDIVTFTSLIKGYCMVKRVDD 386

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
             ++F  +    +  + VTY+ L++GFC +     A+ LF EM+  GV P+V+T+ ++++
Sbjct: 387 GMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD 446

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LC NGK+++A  + E + +  +     +Y T+++G C  G+V  A  LF S+   G   
Sbjct: 447 GLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKP 506

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +V +Y ++I+G CK   +  A  L  +M   G  P   TYNT
Sbjct: 507 NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNT 548



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 160/319 (50%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
             V ++N L   L K   ++    L K + S  + P++ T+N+L++ F K G++     +
Sbjct: 261 SSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANEL 320

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++    +P+ +T+ +L+ G C ++R+ EA  +   +    C PD+ T+T+LI G C 
Sbjct: 321 YKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCM 380

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  + +F  ++    + G+V   +A+TYS +  G C+ G +  A+ELF +M    +
Sbjct: 381 VKRVDDGMKVFRNIS----KRGLV--ANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+TY  L+ G C      +A  +F ++    +   +V +  I+  +CK GK+++A  
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWN 494

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   GV+P+   Y  ++ G C  G ++ A  L   ME +G   +  +Y  LI  + 
Sbjct: 495 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 554

Query: 315 KNKEIEGALSLYSEMLSKG 333
           ++ ++  +  L  EM S G
Sbjct: 555 RDGDLTASAKLIEEMKSCG 573



 Score = 37.4 bits (85), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 4/111 (3%)

Query: 237 NVIMNELCKNG----KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           NV   E  ++G    K D+A  L + MI+    P    ++        T + N   +   
Sbjct: 53  NVCFRERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCK 112

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +E NG   ++++  I+IN +C+  +   A S+  +++  G  P   T+NT
Sbjct: 113 QLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNT 163


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/410 (35%), Positives = 215/410 (52%), Gaps = 76/410 (18%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M+R       + SFN L   LAK +HY  V SL+K+++  GL+PDL T NILINC C
Sbjct: 84  FDLMMR------SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLC 137

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + R++ G   +  I+R  + PD VTFT+LIKGLC E RI+EA  LF +++  GC P+V 
Sbjct: 138 NVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVV 197

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLI GLC  G+  +AL   +EM N    +   C+P+ I+YS I DGLCK G  ++A 
Sbjct: 198 TYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAI 257

Query: 184 ELFLKMKDENINPDVV-----------------------------------TYTSLIRGF 208
            LF +M D+ + P+VV                                   TYTSLI+GF
Sbjct: 258 CLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGF 317

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C   D N AK LF+ M  +G +P+V+++N+++N  CK  K++EA +L   M+ +G+ PD 
Sbjct: 318 CLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDV 377

Query: 269 SVYNTLMDGFCLTGRVNRAKELFV-----------------------------------S 293
                L+    L G+V+ AKELF                                     
Sbjct: 378 KTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNE 437

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +ES     D+ ++G LI+G CK  ++E A  L+ ++  +GI+P  + Y++
Sbjct: 438 LESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSS 487



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 173/322 (53%), Gaps = 6/322 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++I+   L K  +++  + LF  +   G+ P++ T+++LI+  CK G+V     +
Sbjct: 235 PNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKL 294

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    P+  T+TSLIKG C    +  A  LF  + + G +PDV +Y  LING C+
Sbjct: 295 LEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCK 354

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A+ LF EM +      V   PD  T   +   L   G VD AKELF  +K   +
Sbjct: 355 TLKVEEAMKLFNEMLH------VGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAM 408

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D+      + G C      EA  LF E+    ++ ++ TF  +++ LCK GK++ A  
Sbjct: 409 PKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWE 468

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E + + G++PDA  Y++++ GFC  G+V++A  LF  ME NGC  D+ +Y IL+ G+ 
Sbjct: 469 LFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFY 528

Query: 315 KNKEIEGALSLYSEMLSKGIRP 336
           ++ ++E  + L   M+ K + P
Sbjct: 529 ESNKLEKVVQLLHRMIEKDVWP 550



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 156/336 (46%), Gaps = 46/336 (13%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C+F+ M+      P V +F++L   L K         L + +  IG+ P+L+TY  LI  
Sbjct: 258 CLFNEMVD-QGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKG 316

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FC +G ++    +   +    + PD +++  LI G C   ++ EA  LF ++   G  PD
Sbjct: 317 FCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPD 376

Query: 122 VFTYTTLI-----------------------------------NGLCRTGHTIVALNLFE 146
           V T   L+                                   +GLC+ G+   A+ LF 
Sbjct: 377 VKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFN 436

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           E+ + N       K D  T+  + DGLCK G ++ A ELF K+ +E I PD + Y+S+I 
Sbjct: 437 ELESYN------MKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIH 490

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           GFC     ++A  LF +M + G  P+++T++++M    ++ K+++  +LL  MI+  V P
Sbjct: 491 GFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWP 550

Query: 267 DASVYNTLMDGFCLTGRVNRAKEL----FVSMESNG 298
           D  +Y  + D  C   +     +L    FV    NG
Sbjct: 551 DDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNG 586


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 130/342 (38%), Positives = 202/342 (59%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             +F  M+R  P P  V  F+  F  +A+ K ++ VL   K+L   G+  ++YT NI+IN
Sbjct: 63  IALFQEMIRSRPLPSLV-DFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMIN 121

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CFC+  +    + VLG++++  + PD  TF +LIKGL  E ++ EA  L  ++   GC+P
Sbjct: 122 CFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQP 181

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV TY +++NG+CR+G T +AL+L  +M   N       K D  TYSTI D LC++G +D
Sbjct: 182 DVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VKADVFTYSTIIDSLCRDGCID 235

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  LF +M+ + I   VVTY SL+RG C A  WN+   L  +M+ + + PNV+TFNV++
Sbjct: 236 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 295

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   K GK+ EA+ L + MI  G+ P+   YNTLMDG+C+  R++ A  +   M  N C 
Sbjct: 296 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 355

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            D+ ++  LI GYC  K ++  + ++  +  +G+    VTY+
Sbjct: 356 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 397



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 176/338 (52%), Gaps = 17/338 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN+L     K         L+K + + G+ P++ TYN L++ +C   R+S    +
Sbjct: 286 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 345

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R+  +PD VTFTSLIKG C   R+ +   +F  +   G   +  TY+ L+ G C+
Sbjct: 346 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 405

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G   +A  LF+EM +     GV+  PD +TY  + DGLC  G ++KA E+F  ++   +
Sbjct: 406 SGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 459

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +  +V YT++I G C      +A  LF  +  +GV+PNV+T+ V+++ LCK G + EA+ 
Sbjct: 460 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 519

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN--- 311
           LL  M + G  P+   YNTL+      G +  + +L   M+S G   D  S  ++I+   
Sbjct: 520 LLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLL 579

Query: 312 --------GYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                    YC +K  +    L     S+ IR + +T+
Sbjct: 580 SAMKRLTLRYCLSKGSKSRQDLLELSGSEKIRLSSLTF 617



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 170/327 (51%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +++ +   L ++   D  +SLFK + + G+   + TYN L+   CK G+ + G ++L 
Sbjct: 218 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLK 277

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ +TF  L+     E ++ EA  L+ ++   G  P++ TY TL++G C   
Sbjct: 278 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 337

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A N+ + M          C PD +T++++  G C    VD   ++F  +    +  
Sbjct: 338 RLSEANNMLDLMVRNK------CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVA 391

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTY+ L++GFC +     A+ LF EM+  GV P+V+T+ ++++ LC NGK+++A  + 
Sbjct: 392 NAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 451

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E + +  +     +Y T+++G C  G+V  A  LF S+   G   +V +Y ++I+G CK 
Sbjct: 452 EDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 511

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  A  L  +M   G  P   TYNT
Sbjct: 512 GSLSEANILLRKMEEDGNAPNDCTYNT 538



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 134/354 (37%), Gaps = 42/354 (11%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V ++ IL   L  N   +  L +F+ L    +   +  Y  +I   CK G+V  
Sbjct: 422 HGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVED 481

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            + +   +      P+ +T+T +I GLC +  + EA  L  K+   G  P+  TY TLI 
Sbjct: 482 AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIR 541

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVC--KPDAITYSTITDGL-----------CKEG 177
              R G    +  L EEM +        C    DA +   + D L           C   
Sbjct: 542 AHLRDGDLTASAKLIEEMKS--------CGFSADASSIKMVIDMLLSAMKRLTLRYCLSK 593

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN----EAKCLFIEMMDQGVQ--- 230
                ++L      E I    +T+  +          N    EA+ +    +++ ++   
Sbjct: 594 GSKSRQDLLELSGSEKIRLSSLTFVKMFPCNTITTSLNVNTIEARGMNSAELNRDLRKLR 653

Query: 231 --------PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
                    N     ++ NEL   G  D      +LM+ + +  DA  Y          G
Sbjct: 654 RSSVLKKFKNRDVRVLVTNELLTWGLEDAE---CDLMVDLELPTDAVHYAHRAGRMRRPG 710

Query: 283 R---VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           R   V  A+EL   M   G   +  +Y  LI+G+CK   ++ A  +   M++KG
Sbjct: 711 RKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG 764



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/332 (18%), Positives = 138/332 (41%), Gaps = 24/332 (7%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +  +   + K    +   +LF  L   G+ P++ TY ++I+  CK G +S   ++L ++ 
Sbjct: 466 YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKME 525

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+  T+ +LI+    +  +  +A L  ++++ G   D  +   +I+ L      +
Sbjct: 526 EDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRL 585

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTIT-------DGLCKEGFVDKAKELFLKMKDE 192
                  + +    +   +   + I  S++T       + +     V+  +   +   + 
Sbjct: 586 TLRYCLSKGSKSRQDLLELSGSEKIRLSSLTFVKMFPCNTITTSLNVNTIEARGMNSAEL 645

Query: 193 NINPDVVTYTSLIRGFCYAN----------DW--NEAKCLFIEMMDQGVQPNVVTFNVIM 240
           N +   +  +S+++ F   +           W   +A+C    M+D  +  + V +    
Sbjct: 646 NRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDL--MVDLELPTDAVHYAHRA 703

Query: 241 NELCKNGK---MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
             + + G+   +  A  L + MIQ G+ P+   Y++L+DGFC   R++ A ++   M + 
Sbjct: 704 GRMRRPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTK 763

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
           G     +    L+    K  E EG  +L  ++
Sbjct: 764 GDSDIRYLLAGLMRKKRKGSETEGWENLPDDL 795


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 133/329 (40%), Positives = 201/329 (61%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           PP+  FN + G LAK K Y T +SL K++   G+  +  T NILINCFC +G+++  F V
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG+IL+  + PD +T  +L+KGLC +  + ++     K+ A G + D  +Y TL+NGLC+
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCK 127

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A+ L   + + +       +P+ + Y+TI DGLCK+  V++A +L+ +M    I
Sbjct: 128 IGETRCAVKLLRMIEDRS------TRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +TYT+LI GFC       A  L  EM+ + + P V  +N+++N LCK G + EA  
Sbjct: 182 FPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKN 241

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL +M + G++P    Y+TLMDG+CL G V  AK++F +M   G   +V+SY I+ING C
Sbjct: 242 LLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLC 301

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K K ++ A++L  EML K + P  VTYN+
Sbjct: 302 KCKRVDEAMNLLREMLHKNMVPDTVTYNS 330



 Score =  203 bits (517), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 175/335 (52%), Gaps = 6/335 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+    + P V  +N +   L K+K  +    L+  +++ G+FPD  TY  LI  FC +G
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLG 199

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++   F +L  ++     P    +  LI  LC E  + EA  L   +   G KP V TY+
Sbjct: 200 QLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYS 259

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TL++G C  G    A  +F  M     + GV   P+  +Y+ + +GLCK   VD+A  L 
Sbjct: 260 TLMDGYCLVGEVQNAKQIFHAMV----QMGV--NPNVYSYNIMINGLCKCKRVDEAMNLL 313

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +N+ PD VTY SLI G C +     A  L  EM  +G   +VVT+  +++ LCKN
Sbjct: 314 REMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKN 373

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
             +D+A+ L   M + G++P    Y  L+DG C  GR+  A+ELF  +   GC  DV++Y
Sbjct: 374 QNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTY 433

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++I+G CK    + AL++ S+M   G  P  VT+
Sbjct: 434 TVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTF 468



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 169/334 (50%), Gaps = 11/334 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D M+ +    P V  +NIL   L K  +     +L   +   G+ P + TY+ L++
Sbjct: 205 FSLLDEMI-LKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMD 263

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +C +G V     +   +++    P+  ++  +I GLC   R+ EA  L  ++      P
Sbjct: 264 GYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVP 323

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TY +LI+GLC++G    ALNL  EM +  G+       D +TY+++ D LCK   +D
Sbjct: 324 DTVTYNSLIDGLCKSGRITSALNLMNEMHH-RGQ-----PADVVTYTSLLDALCKNQNLD 377

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA  LF+KMK+  I P + TYT+LI G C       A+ LF  ++ +G   +V T+ V++
Sbjct: 378 KATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMI 437

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK G  DEA  +   M   G  P+A  +  ++         ++A++L   M + G +
Sbjct: 438 SGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLL 497

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
             V  + +  + + +N E + A  L  EM++KG+
Sbjct: 498 --VLDFKV-ADVFVQN-ENDKAEKLLHEMIAKGL 527


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/340 (38%), Positives = 207/340 (60%), Gaps = 6/340 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ +L      P +  F  + G L K+ HY TV+SL +++   G+  DL   +ILINCF 
Sbjct: 59  FNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFS 118

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++G+    F VL +IL+  + P+ +T T+LIKGLC + +I +A     K+ A G   +  
Sbjct: 119 QLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKV 178

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+ G T  AL L   +       G + +P+ + Y+TI D +CK   V++A 
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVD------GKLVQPNVVMYNTIIDSMCKVKLVNEAF 232

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M  + I+PDVVTY +LI GFC      +A  LF +M+ + + PNV TFN++++  
Sbjct: 233 DLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGF 292

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++ EA  +L +M++ G++PD   YN+LMD +CL   VN+AK +F ++   G   ++
Sbjct: 293 CKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNI 352

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY I+I+G+CK K+++ A++L+ EM    I P VVTYN+
Sbjct: 353 HSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNS 392



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 173/327 (52%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   + K K  +    L+  + S G+ PD+ TYN LI+ FC +G++     +
Sbjct: 210 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDL 269

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+  TF  L+ G C E R+ EA  +   +   G KPDVFTY +L++  C 
Sbjct: 270 FNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCL 329

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  ++    + GV   P+  +YS +  G CK   VD+A  LF +M   NI
Sbjct: 330 VKEVNKAKHIFNTIS----QRGV--NPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNI 383

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY SLI G C     + A  L  EM D+GV  + +T+N I++ LCKN ++D+A  
Sbjct: 384 IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 443

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M   G++PD   Y TL+DG C  GR+  A+ +F  +   G + DV  Y  +I G+C
Sbjct: 444 LLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFC 503

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +   + +L L S+M   G  P  VTY
Sbjct: 504 SHGLFDESLDLLSKMEENGCIPNAVTY 530



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 181/344 (52%), Gaps = 9/344 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           F +   +L+M   P  +    ++ G CL    H    L    ++ ++G   +  +Y  LI
Sbjct: 127 FSVLAKILKMGYEPNVITLTTLIKGLCLKGQIH--QALQFHDKVVALGFHLNKVSYGTLI 184

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           N  CK+G+ S    +L R+      P+ V + ++I  +C    + EA  L++++ + G  
Sbjct: 185 NGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGIS 244

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PDV TY  LI+G C  G    A +LF +M   N        P+  T++ + DG CKE  +
Sbjct: 245 PDVVTYNALISGFCIVGKMKDATDLFNKMIFEN------INPNVYTFNILVDGFCKERRL 298

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            +AK +   M  + I PDV TY SL+  +C   + N+AK +F  +  +GV PN+ +++++
Sbjct: 299 KEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIM 358

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  CK  K+DEA  L + M    + PD   YN+L+DG C  G+++ A +L   M   G 
Sbjct: 359 IHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGV 418

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             D  +Y  +++  CKN +++ A++L ++M  +GI+P + TY T
Sbjct: 419 PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTT 462



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 170/320 (53%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L               LF ++    + P++YT+NIL++ FCK  R+     V
Sbjct: 245 PDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNV 304

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD  T+ SL+   C    + +A  +F  +   G  P++ +Y+ +I+G C+
Sbjct: 305 LAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCK 364

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+NLF+EM   N        PD +TY+++ DGLCK G +  A +L  +M D  +
Sbjct: 365 IKKVDEAMNLFKEMHCNN------IIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGV 418

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY S++   C  +  ++A  L  +M D+G+QP++ T+  +++ LCKNG++++A  
Sbjct: 419 PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARI 478

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E ++  G   D ++Y  ++ GFC  G  + + +L   ME NGC+ +  +Y I+I    
Sbjct: 479 VFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLF 538

Query: 315 KNKEIEGALSLYSEMLSKGI 334
              E + A  L  EM+++G+
Sbjct: 539 DKDENDKAEKLLREMITRGL 558



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P    ++N +   L KN   D  ++L  ++   G+ PD+ TY  L++  CK GR+    +
Sbjct: 419 PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARI 478

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   +L   +  D   +T++I+G C+     E+  L +K+   GC P+  TY  +I  L 
Sbjct: 479 VFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLF 538

Query: 134 RTGHTIVALNLFEEM 148
                  A  L  EM
Sbjct: 539 DKDENDKAEKLLREM 553


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 134/341 (39%), Positives = 210/341 (61%), Gaps = 8/341 (2%)

Query: 4   FDYMLRMHPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           F+++L +H +P PP   FN +   L K KH+ T LSL +++   G+  D +T+NILINCF
Sbjct: 48  FNHLL-LHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCF 106

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            ++G  S  F +  +IL+  + P A+TF +LIKGLC +  I +A     K+ A G   D 
Sbjct: 107 SQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQ 166

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y TLINGLC+ G    AL L + +       G + +P+A+ Y+ I D +CK   V+ A
Sbjct: 167 VSYGTLINGLCKVGRITAALQLLKRVD------GKLVQPNAVMYNMIIDNMCKAKLVNDA 220

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L+ +M  + I PDV TY +LI GF   +  N A  LF +M  + + PNV TFN++++ 
Sbjct: 221 FDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDG 280

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK GK+++A  +L +M++  ++PD   YN+LMDG+C   +VN+AK++F SM S G + +
Sbjct: 281 FCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIAN 340

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V  Y  ++NG+CK K ++ A++L+ EM  + I P VVTY++
Sbjct: 341 VQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSS 381



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 181/323 (56%), Gaps = 12/323 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L    +     +  + LF ++    + P++YT+NIL++ FCK G+V+   VV
Sbjct: 234 PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVV 293

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD VT+ SL+ G C+ +++ +A  +F  + + G   +V  YTT++NG C+
Sbjct: 294 LAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCK 353

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
                 A+NLFEEM          C+   P+ +TYS++ DGLCK G +  A +L  +M D
Sbjct: 354 IKMVDEAINLFEEMR---------CRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHD 404

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               P++VTY+S++   C  +  ++A  L   + DQG++P++ T+ +++  LC++G++++
Sbjct: 405 RGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLED 464

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  + E ++  G   D   Y  ++ GFC  G  ++A  L   ME NGC+ +  +Y ++I 
Sbjct: 465 AQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVIL 524

Query: 312 GYCKNKEIEGALSLYSEMLSKGI 334
              +  E + A  L  EM+ +G+
Sbjct: 525 SLFEKDENDTAEKLLREMIVRGL 547



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 175/341 (51%), Gaps = 7/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F IF  +L+    P  + +FN L   L    H    L    ++ + G   D  +Y  LIN
Sbjct: 116 FSIFAKILKKGYHPTAI-TFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLIN 174

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+GR++    +L R+      P+AV +  +I  +C    + +A  L++++ A    P
Sbjct: 175 GLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICP 234

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DVFTY  LI+G         A++LF +M   N        P+  T++ + DG CKEG V+
Sbjct: 235 DVFTYNALISGFSAVSKLNYAIDLFNKMKKEN------INPNVYTFNILVDGFCKEGKVN 288

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            AK +   M  ++I PDVVTY SL+ G+C  N  N+AK +F  M   GV  NV  +  ++
Sbjct: 289 DAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMV 348

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N  CK   +DEA  L E M    + P+   Y++L+DG C  GR+  A +L   M   G  
Sbjct: 349 NGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQP 408

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++ +Y  +++  CKN  ++ A++L + +  +GIRP + TY
Sbjct: 409 PNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTY 449



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 175/327 (53%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N++   + K K  +    L+ ++ +  + PD++TYN LI+ F  + +++    +
Sbjct: 199 PNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDL 258

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++ +    P+  TF  L+ G C E ++ +A  +   +     KPDV TY +L++G C 
Sbjct: 259 FNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCS 318

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F+ MA+G    GV+   +   Y+T+ +G CK   VD+A  LF +M+   I
Sbjct: 319 INKVNKAKDIFDSMASG----GVIA--NVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKI 372

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTY+SLI G C       A  L  EM D+G  PN+VT++ I++ LCKN  +D+A  
Sbjct: 373 IPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIA 432

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  +   G+RPD   Y  L+ G C +GR+  A+ +F  +   G   DV++Y ++I G+C
Sbjct: 433 LLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFC 492

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
                + AL+L S+M   G  P   TY
Sbjct: 493 DKGFFDKALALLSKMEDNGCIPNAKTY 519



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 2/142 (1%)

Query: 9   RMHP--SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
            MH    PP + +++ +   L KN H D  ++L   L   G+ PD+YTY ILI   C+ G
Sbjct: 401 EMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSG 460

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R+     V   +L   +  D   +T +I+G C +    +A AL +K+   GC P+  TY 
Sbjct: 461 RLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYE 520

Query: 127 TLINGLCRTGHTIVALNLFEEM 148
            +I  L        A  L  EM
Sbjct: 521 LVILSLFEKDENDTAEKLLREM 542


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/340 (39%), Positives = 208/340 (61%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M  + P +  F  + G L K KH+ T +SL K++   G+ PDL T +ILINCFC
Sbjct: 120 FNGMLLMR-NTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFC 178

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +G+++  F VLG+IL+  + P+ +  T+L+KGLC +  + ++     K+ A G + +  
Sbjct: 179 HLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQV 238

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TL+NGLC+ G T  A+ L   + + +       +PD + Y+TI DGLCK+  V++A 
Sbjct: 239 SYGTLLNGLCKIGETRCAIKLLRMIEDRS------TRPDVVMYNTIIDGLCKDKLVNEAY 292

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           + + +M    I PDV+TY++LI GFC A     A  L  EM  + + P+V T+ ++++ L
Sbjct: 293 DFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDAL 352

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  LL +M + GV+P+   Y+TLMDG+CL G V+ AK++F +M        V
Sbjct: 353 CKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSV 412

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY I+ING CK K ++ A++L  EML K + P  VTYN+
Sbjct: 413 CSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNS 452



 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 112/320 (35%), Positives = 177/320 (55%), Gaps = 14/320 (4%)

Query: 23  LFGCLAKNKHY-DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           L G + K+ H+ D V++   ++N +       +Y  L+N  CK+G       +L  I   
Sbjct: 214 LKGEVKKSLHFHDKVVAQGFQMNQV-------SYGTLLNGLCKIGETRCAIKLLRMIEDR 266

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
              PD V + ++I GLC +  + EA   +T++ + G  PDV TY+TLI G C  G  + A
Sbjct: 267 STRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGA 326

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
            +L  EM   N        PD  TY+ + D LCKEG + +AK L   M  E + P+VVTY
Sbjct: 327 FSLLNEMTLKN------INPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTY 380

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           ++L+ G+C   + + AK +F  M+   V P+V ++N+++N LCK   +DEA  LL  M+ 
Sbjct: 381 STLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLH 440

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
             V P+   YN+L+DG C +GR+  A +L   +   G   DV +Y  L++G CKN+ ++ 
Sbjct: 441 KNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDK 500

Query: 322 ALSLYSEMLSKGIRPTVVTY 341
           A++L+ +M  +GI+P   TY
Sbjct: 501 AIALFMKMKERGIQPNKYTY 520



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 174/335 (51%), Gaps = 6/335 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+    + P V  +N +   L K+K  +     +  +NS G+FPD+ TY+ LI  FC  G
Sbjct: 262 MIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAG 321

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++   F +L  +      PD  T+T LI  LC E ++ EA  L   +   G KP+V TY+
Sbjct: 322 QLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYS 381

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TL++G C  G    A  +F  M            P   +Y+ + +GLCK   VD+A  L 
Sbjct: 382 TLMDGYCLVGEVHNAKQIFHAMVQTE------VNPSVCSYNIMINGLCKGKSVDEAMNLL 435

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +N+ P+ VTY SLI G C +     A  L  E+  +G   +V+T+  +++ LCKN
Sbjct: 436 REMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKN 495

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
             +D+A  L   M + G++P+   Y  L+DG C   R+  A++LF  +   GC  DV++Y
Sbjct: 496 QNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTY 555

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++I G CK   ++ AL++ S+M   G  P  VT+
Sbjct: 556 NVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTF 590



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/324 (32%), Positives = 164/324 (50%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K       + L + +      PD+  YN +I+  CK   V+  +     +
Sbjct: 239 SYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEM 298

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 PD +T+++LI G C   ++M A +L  ++      PDV+TYT LI+ LC+ G  
Sbjct: 299 NSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKL 358

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A NL   M       GV  KP+ +TYST+ DG C  G V  AK++F  M    +NP V
Sbjct: 359 KEAKNLLGVMTKE----GV--KPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSV 412

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            +Y  +I G C     +EA  L  EM+ + V PN VT+N +++ LCK+G++  A  L++ 
Sbjct: 413 CSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKE 472

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           +   G   D   Y +L+DG C    +++A  LF+ M+  G   + ++Y  LI+G CK   
Sbjct: 473 LHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGAR 532

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           ++ A  L+  +L KG    V TYN
Sbjct: 533 LKNAQKLFQHILVKGCCIDVYTYN 556



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 147/287 (51%), Gaps = 6/287 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL   L K        +L   +   G+ P++ TY+ L++ +C +G V     +
Sbjct: 340 PDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQI 399

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++++   P   ++  +I GLC    + EA  L  ++      P+  TY +LI+GLC+
Sbjct: 400 FHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCK 459

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    AL+L +E+ +  G+       D ITY+++ DGLCK   +DKA  LF+KMK+  I
Sbjct: 460 SGRITSALDLMKELHH-RGQ-----PADVITYTSLLDGLCKNQNLDKAIALFMKMKERGI 513

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TYT+LI G C       A+ LF  ++ +G   +V T+NV++  LCK G +DEA  
Sbjct: 514 QPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALA 573

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           +   M   G  PDA  +  ++         ++A++L   M + G + 
Sbjct: 574 MKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLH 620



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 4   FDYMLRMHP--SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            D M  +H    P  V ++  L   L KN++ D  ++LF ++   G+ P+ YTY  LI+ 
Sbjct: 467 LDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDG 526

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK  R+     +   IL      D  T+  +I GLC E  + EA A+ +K+   GC PD
Sbjct: 527 LCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPD 586

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEM 148
             T+  +I  L        A  L  EM
Sbjct: 587 AVTFEIIIRSLFEKDENDKAEKLLHEM 613


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  263 bits (672), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 138/340 (40%), Positives = 205/340 (60%), Gaps = 6/340 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+++L M     P+  FN +   L K  H+ T +S  K++    + PDL+T+NILINCFC
Sbjct: 51  FNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFC 110

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +G ++  F VL +I +  F PD VT T+LIKGLC   ++ EA      + A G   D  
Sbjct: 111 HLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQV 170

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+TG T  AL +  ++       G++ +P+ + Y+TI D LCK+  V  A 
Sbjct: 171 SYGTLINGLCKTGETRAALQVLRKID------GLLVQPNVVMYNTIIDSLCKDKLVIHAS 224

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L  +M  + I PDVVTYT+LI G        EA  LF +M+ + ++P+V TFN++++ L
Sbjct: 225 DLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGL 284

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G+M +A  +L +MI+ GV  +   YN+LMDG+ L  + N+A  +F +M   G   DV
Sbjct: 285 CKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDV 344

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY I+ING CK K ++ A++L+ EM SK + P  VTYN+
Sbjct: 345 QSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNS 384



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 176/320 (55%), Gaps = 7/320 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  V    +++GCL   +  + V  LF ++    + PD+YT+NIL++  CK G +     
Sbjct: 237 PDVVTYTTLIYGCLIVGRLKEAV-GLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARN 295

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL  +++     + VT+ SL+ G     +  +A  +F  +   G  PDV +Y+ +INGLC
Sbjct: 296 VLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLC 355

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +T     A+NLF+EM + +        P+ +TY+++ DGL K G +  A +L  +M +  
Sbjct: 356 KTKMVDEAVNLFKEMHSKS------MAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRG 409

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              DV+TY+SL+   C  +  ++A  L  ++ DQG+QPN+ T+ ++++ LCKNG++ +A 
Sbjct: 410 QPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQ 469

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + + ++  G   D  +YN +++G C  G  + A  L   ME NGC+ D  +Y  L+   
Sbjct: 470 AVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRAL 529

Query: 314 CKNKEIEGALSLYSEMLSKG 333
            +N + + A+ L  EM+ +G
Sbjct: 530 FENDKNDKAVKLLREMIVQG 549



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 179/373 (47%), Gaps = 41/373 (10%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYT--------- 54
           F   + +    P + +FNIL  C     H +   S+  ++  +G  PD  T         
Sbjct: 86  FSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLC 145

Query: 55  --------------------------YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
                                     Y  LIN  CK G       VL +I      P+ V
Sbjct: 146 LNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVV 205

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
            + ++I  LC +  ++ A+ L +++      PDV TYTTLI G    G    A+ LF +M
Sbjct: 206 MYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQM 265

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
              N       KPD  T++ + DGLCKEG + KA+ +   M  + ++ ++VTY SL+ G+
Sbjct: 266 LLKN------IKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGY 319

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
                 N+A  +F  M  +GV P+V ++++++N LCK   +DEA  L + M    + P+ 
Sbjct: 320 FLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNT 379

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             YN+L+DG    GR++ A +L   M + G   DV +Y  L++  CKN +++ A++L ++
Sbjct: 380 VTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITK 439

Query: 329 MLSKGIRPTVVTY 341
           +  +GI+P + TY
Sbjct: 440 IKDQGIQPNIYTY 452



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 172/354 (48%), Gaps = 29/354 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K       L + ++++ + + P++  YN +I+  CK   V     +   +
Sbjct: 171 SYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEM 230

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     PD VT+T+LI G     R+ EA  LF ++     KPDV+T+  L++GLC+ G  
Sbjct: 231 IVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEM 290

Query: 139 IVALNLFEEMANGNGEFGVV-----------------------------CKPDAITYSTI 169
             A N+   M     +  +V                               PD  +YS +
Sbjct: 291 KKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIM 350

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +GLCK   VD+A  LF +M  +++ P+ VTY SLI G       ++A  L  EM ++G 
Sbjct: 351 INGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQ 410

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             +V+T++ +++ LCKN ++D+A  L+  +   G++P+   Y  L+DG C  GR+  A+ 
Sbjct: 411 PADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQA 470

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  +   G   DV  Y +++NG CK    + ALSL S+M   G  P  VTY T
Sbjct: 471 VYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYET 524


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  263 bits (672), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 137/342 (40%), Positives = 203/342 (59%), Gaps = 8/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+RM P P  V  F+ LF  +   KHY  V+SLF+ +  +G+       NI+ N +
Sbjct: 49  LFHRMVRMKPLPS-VIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSY 107

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPD 121
           C   R+   F VL   L++    + VTF +L+ GL AE+++ +A  LF KL R   C+P+
Sbjct: 108 CLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPN 167

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
              Y T++NGL + GHT   L+L   M  GN       KPD  TYS + D LCK+  +D 
Sbjct: 168 EVMYGTVMNGLSKRGHTEKTLSLLRIMEQGN------TKPDVRTYSIVIDALCKDINLDA 221

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L  +MK +NI P++ TY SLI G C    W + K L  EM++  + PNV TF+++++
Sbjct: 222 AINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILID 281

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK GK+++A  ++  MI+ GV PD   Y+ +MDG+CL G+V+RA+ +F  +   G   
Sbjct: 282 GLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKP 341

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++FSY ILINGYCK K +  A+ L+ E+  KG++P  VTY+T
Sbjct: 342 NIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYST 383



 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 185/340 (54%), Gaps = 6/340 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  ++R     P    +  +   L+K  H +  LSL + +      PD+ TY+I+I+  
Sbjct: 154 LFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDAL 213

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK   +     +L  + +    P+  T+ SLI GLC   +  +   L +++      P+V
Sbjct: 214 CKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNV 273

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T++ LI+GLC+ G    A  +   M     E GV  +PD ITYS I DG C  G VD+A
Sbjct: 274 HTFSILIDGLCKEGKVEDADEVMRHMI----EKGV--EPDIITYSAIMDGYCLRGQVDRA 327

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F  ++D+ I P++ +Y+ LI G+C   +  +A  LF E+  +G++P+ VT++ I++ 
Sbjct: 328 RRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHG 387

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L + G++ +A ++ + M+++G  PD  +++TL+ G+   G V  A  LF  +E N    +
Sbjct: 388 LIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTN 447

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +  Y ++ING CKN  +  A +++ ++ S G+ P V TYN
Sbjct: 448 ISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYN 487



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 173/320 (54%), Gaps = 6/320 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + ++N L   L K   ++ V +L   + ++ + P+++T++ILI+  CK G+V     
Sbjct: 235 PPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADE 294

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V+  ++     PD +T+++++ G C   ++  A  +F  LR  G KP++F+Y+ LING C
Sbjct: 295 VMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYC 354

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +  +   A+ LF E++          KPD +TYSTI  GL + G +  AK++F +M    
Sbjct: 355 KKKNLAKAMQLFGEISQKG------LKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVG 408

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD+  +++L+ G+       EA  LF ++       N+  + V++N LCKN ++ EA 
Sbjct: 409 PTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAH 468

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + E +  IG+ PD   YN ++ GFC  G  +  K +   ME NGC  +  +Y +++ G+
Sbjct: 469 AIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGF 528

Query: 314 CKNKEIEGALSLYSEMLSKG 333
            ++ +I   +S   EM  +G
Sbjct: 529 FRSNKISEIVSFMKEMAGRG 548



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 36/201 (17%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A  LF +M      P V+ ++ L +       ++    LF EM   G+  +    N+
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL------------------------ 274
           + N  C   ++D A  +L + ++ G+  +   +NTL                        
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 275 ------------MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
                       M+G    G   +   L   ME      DV +Y I+I+  CK+  ++ A
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAA 222

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           ++L +EM  K I P + TYN+
Sbjct: 223 INLLNEMKQKNIPPNIFTYNS 243


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P  P V  FN LF  +AK K Y+ VL+L K++ S G+   +YT +I+INCF
Sbjct: 75  LFRDMIQSRP-LPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCF 133

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S  F  +G+I++  + PD V F +L+ GLC E R+ EA  L  ++   G KP +
Sbjct: 134 CRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTL 193

Query: 123 FTYTTLINGL-----------------------------------CRTGHTIVALNLFEE 147
            T  TL+NGL                                   C++G T +A+ L  +
Sbjct: 194 ITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRK 253

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M   N       K DA+ YS I DGLCK+G +D A  LF +M+ +    D++TY +LI G
Sbjct: 254 MEERN------IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGG 307

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           FC A  W++   L  +M+ + + PNVVTF+V+++   K GK+ EA +LL+ M+Q G+ P+
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YN+L+DGFC   R+  A ++   M S GC  D+ ++ ILINGYCK   I+  L L+ 
Sbjct: 368 TITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFR 427

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  +G+    VTYNT
Sbjct: 428 EMSLRGVIANTVTYNT 443



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 164/327 (50%), Gaps = 7/327 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+ M   P  + + N L   L  N      + L  R+   G  P+  TY  ++N  
Sbjct: 180 LVDRMVEMGHKPTLI-TLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVM 238

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G+ +    +L ++       DAV ++ +I GLC +  +  A  LF ++   G K D+
Sbjct: 239 CKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADI 298

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY TLI G C  G       L  +M            P+ +T+S + D   KEG + +A
Sbjct: 299 ITYNTLIGGFCNAGRWDDGAKLLRDMIKRK------ISPNVVTFSVLIDSFVKEGKLREA 352

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L  +M    I P+ +TY SLI GFC  N   EA  +   M+ +G  P+++TFN+++N 
Sbjct: 353 DQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILING 412

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK  ++D+   L   M   GV  +   YNTL+ GFC +G++  AK+LF  M S     D
Sbjct: 413 YCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEM 329
           + SY IL++G C N E+E AL ++ ++
Sbjct: 473 IVSYKILLDGLCDNGELEKALEIFGKI 499



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 169/323 (52%), Gaps = 6/323 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           ++I+   L K+   D   +LF  +   G   D+ TYN LI  FC  GR   G  +L  ++
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           +   +P+ VTF+ LI     E ++ EA  L  ++   G  P+  TY +LI+G C+     
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A+ + + M +        C PD +T++ + +G CK   +D   ELF +M    +  + V
Sbjct: 386 EAIQMVDLMISKG------CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTV 439

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY +L++GFC +     AK LF EM+ + V+P++V++ ++++ LC NG++++A  +   +
Sbjct: 440 TYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            +  +  D  +Y  ++ G C   +V+ A +LF S+   G   D  +Y I+I+  C+   +
Sbjct: 500 EKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSL 559

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
             A  L+ +M  +G  P  +TYN
Sbjct: 560 SKADILFRKMTEEGHAPDELTYN 582



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 164/324 (50%), Gaps = 6/324 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++N L G       +D    L + +    + P++ T+++LI+ F K G++     +L 
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +++    P+ +T+ SLI G C E+R+ EA  +   + + GC PD+ T+  LING C+  
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
                L LF EM+      GV+   + +TY+T+  G C+ G ++ AK+LF +M    + P
Sbjct: 418 RIDDGLELFREMSLR----GVI--ANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D+V+Y  L+ G C   +  +A  +F ++    ++ ++  + +I++ +C   K+D+A  L 
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             +   GV+ DA  YN ++   C    +++A  LF  M   G   D  +Y ILI  +  +
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGD 591

Query: 317 KEIEGALSLYSEMLSKGIRPTVVT 340
            +   A  L  EM S G    V T
Sbjct: 592 DDATTAAELIEEMKSSGFPADVST 615



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 148/297 (49%), Gaps = 6/297 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F++L     K         L K +   G+ P+  TYN LI+ FCK  R+     +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM 390

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++     PD +TF  LI G C  +RI +   LF ++   G   +  TY TL+ G C+
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G   VA  LF+EM +         +PD ++Y  + DGLC  G ++KA E+F K++   +
Sbjct: 451 SGKLEVAKKLFQEMVSRR------VRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKM 504

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D+  Y  +I G C A+  ++A  LF  +  +GV+ +   +N++++ELC+   + +A  
Sbjct: 505 ELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADI 564

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           L   M + G  PD   YN L+           A EL   M+S+G   DV +  ++IN
Sbjct: 565 LFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVIN 621



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 30/268 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
            P   ++N L     K    +  + +   + S G  PD+ T+NILIN +CK  R+  G  
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +       + VT+ +L++G C   ++  A  LF ++ +   +PD+ +Y  L++GLC
Sbjct: 425 LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484

Query: 134 RTGHTIVALNLFEEMANGNGEFGV---------VC--------------------KPDAI 164
             G    AL +F ++     E  +         +C                    K DA 
Sbjct: 485 DNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDAR 544

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            Y+ +   LC++  + KA  LF KM +E   PD +TY  LIR     +D   A  L  EM
Sbjct: 545 AYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEM 604

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              G   +V T  +++N L  +G++D++
Sbjct: 605 KSSGFPADVSTVKMVINML-SSGELDKS 631



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
            D A +LF  M      P V+ +  L         +     L  +M  +G+  ++ T ++
Sbjct: 69  ADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSI 128

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C+  K+  A   +  ++++G  PD  ++NTL++G CL  RV+ A EL   M   G
Sbjct: 129 MINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMG 188

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
               + +   L+NG C N ++  A+ L   M+  G +P  VTY
Sbjct: 189 HKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTY 231



 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%)

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K D+A  L   MIQ    P    +N L      T +      L   MES G    +++  
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+IN +C+ +++  A S   +++  G  P  V +NT
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNT 163


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/340 (37%), Positives = 201/340 (59%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+R  P P  V  F+  F  +A+ K ++ VL   K+L   G+  ++YT NI+INCF
Sbjct: 75  LFQEMIRSRPLPGLV-DFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCF 133

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  +    + VLG++++  + PD  TF +LI GLC E ++ +A  L  ++   GC+PD+
Sbjct: 134 CRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDM 193

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY +++NG+CR+G T +A ++  +M   N       K D  TYSTI D LC++G +D A
Sbjct: 194 VTYNSIVNGICRSGDTSLAFDMLRKMEERN------VKADVFTYSTIIDSLCRDGCIDAA 247

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M+ + I   VVTY SL+RG C A  WN+   L  +M+ + + PNV+TFNV+++ 
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K GK+ EA+ L + MI  G+ P+   YNTLMDG+C+  R++ A  +   M  N C  D
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + ++  LI GYC  K ++  + ++  +  +G+    VTY+
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 175/342 (51%), Gaps = 8/342 (2%)

Query: 4   FDYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           FD + +M        V +++ +   L ++   D  +SLFK + + G+   + TYN L+  
Sbjct: 213 FDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G+ + G ++L  ++     P+ +TF  L+     E ++ EA  L+ ++   G  P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY TL++G C       A N+ + M          C PD +T++++  G C    VD 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNK------CSPDIVTFTSLIKGYCMVKRVDD 386

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
             ++F  +    +  + VTY+ L++GFC +     A+ LF EM+  GV P+V+T+ ++++
Sbjct: 387 GMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD 446

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LC NGK+++A  + E + +  +     +Y T+++G C  G+V  A  LF S+   G   
Sbjct: 447 GLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKP 506

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +V +Y ++I+G CK   +  A  L  +M   G  P   TYNT
Sbjct: 507 NVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNT 548



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 162/297 (54%), Gaps = 6/297 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN+L     K         L+K + + G+ P++ TYN L++ +C   R+S    +
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R+  +PD VTFTSLIKG C   R+ +   +F  +   G   +  TY+ L+ G C+
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G   +A  LF+EM +     GV+  PD +TY  + DGLC  G ++KA E+F  ++   +
Sbjct: 416 SGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +  +V YT++I G C      +A  LF  +  +GV+PNV+T+ V+++ LCK G + EA+ 
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           LL  M + G  P+   YNTL+      G +  + +L   M+S G   D  S  ++I+
Sbjct: 530 LLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 171/356 (48%), Gaps = 29/356 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L         + L  R+   G  PD+ TYN ++N  C+ G  S  F +
Sbjct: 156 PDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDM 215

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++       D  T++++I  LC +  I  A +LF ++   G K  V TY +L+ GLC+
Sbjct: 216 LRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCK 275

Query: 135 TGH------------------TIVALNLFEEMANGNGEFGVV-----------CKPDAIT 165
            G                    ++  N+  ++    G+                 P+ IT
Sbjct: 276 AGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIIT 335

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+ DG C +  + +A  +   M     +PD+VT+TSLI+G+C     ++   +F  + 
Sbjct: 336 YNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNIS 395

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            +G+  N VT+++++   C++GK+  A  L + M+  GV PD   Y  L+DG C  G++ 
Sbjct: 396 KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLE 455

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +A E+F  ++ +     +  Y  +I G CK  ++E A +L+  +  KG++P V+TY
Sbjct: 456 KALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 160/320 (50%), Gaps = 6/320 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
              V ++N L   L K   ++    L K + S  + P++ T+N+L++ F K G++     
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   ++    +P+ +T+ +L+ G C ++R+ EA  +   +    C PD+ T+T+LI G C
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                   + +F  ++    + G+V   +A+TYS +  G C+ G +  A+ELF +M    
Sbjct: 380 MVKRVDDGMKVFRNIS----KRGLV--ANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PDV+TY  L+ G C      +A  +F ++    +   +V +  I+  +CK GK+++A 
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   +   GV+P+   Y  ++ G C  G ++ A  L   ME +G   +  +Y  LI  +
Sbjct: 494 NLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAH 553

Query: 314 CKNKEIEGALSLYSEMLSKG 333
            ++ ++  +  L  EM S G
Sbjct: 554 LRDGDLTASAKLIEEMKSCG 573



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 138/273 (50%), Gaps = 6/273 (2%)

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   ++RS   P  V F+     +    +         +L   G   +++T   +IN
Sbjct: 72  AIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMIN 131

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
             CR   T  A ++  ++     E      PD  T++T+ +GLC EG V KA  L  +M 
Sbjct: 132 CFCRCCKTCFAYSVLGKVMKLGYE------PDTTTFNTLINGLCLEGKVSKAVVLVDRMV 185

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           +    PD+VTY S++ G C + D + A  +  +M ++ V+ +V T++ I++ LC++G +D
Sbjct: 186 ENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            A  L + M   G++     YN+L+ G C  G+ N    L   M S   + +V ++ +L+
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + + K  +++ A  LY EM+++GI P ++TYNT
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNT 338


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 135/297 (45%), Positives = 187/297 (62%), Gaps = 6/297 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           GL P+  T NILINCFC++ RV  GF VL + ++    P  VTFT+LI GL    +  +A
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             LF  + A GC+PD +TYTT+INGLC+ G T +A  LF++M          C+ + +TY
Sbjct: 65  VELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAG------CQLNVVTY 118

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           ST+   LCK   V++A ++F  MK ++I+P + TYTSLI+G C  + W EA  L  EM  
Sbjct: 119 STLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTS 178

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
             + PNVVTFNV+++  CK GK+  A  +L+ M ++GV PD   YN+LM G+ +   V  
Sbjct: 179 LNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVE 238

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A++LF  M + GC  DVFSY ILINGYCK K I+ A  L++EM+ +G  P  V+YNT
Sbjct: 239 ARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNT 295



 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 181/328 (55%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L K   +   + LF  + + G  PD YTY  +IN  CK+G  +    +
Sbjct: 43  PTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGL 102

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++  +    + VT+++LI  LC   R+ EA  +F+ ++A    P +FTYT+LI GLC 
Sbjct: 103 FKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCN 162

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L  EM + N        P+ +T++ + D  CKEG V  A+ +   M +  +
Sbjct: 163 FSRWKEASALLNEMTSLN------IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGV 216

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY SL+ G+    +  EA+ LF  M+ +G +P+V ++++++N  CK  ++DEA +
Sbjct: 217 EPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQ 276

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   MI  G  P+   YNTL+ G C  GR+  A++LF +M +NG + ++++Y IL++G+C
Sbjct: 277 LFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFC 336

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +  A  L+  M S  ++P +V YN
Sbjct: 337 KQGYLGKAFRLFRAMQSTYLKPNLVMYN 364



 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 180/331 (54%), Gaps = 7/331 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF YM +     P + ++  L   L     +    +L   + S+ + P++ T+N+L++ F
Sbjct: 137 IFSYM-KAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTF 195

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G+V     VL  +      PD VT+ SL+ G    + ++EA  LF  +   GCKPDV
Sbjct: 196 CKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDV 255

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           F+Y+ LING C+      A  LF EM +          P+ ++Y+T+  GLC+ G + +A
Sbjct: 256 FSYSILINGYCKAKRIDEAKQLFNEMIHQGS------TPNNVSYNTLIHGLCQLGRLREA 309

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++LF  M      P++ TY  L+ GFC      +A  LF  M    ++PN+V +N+++N 
Sbjct: 310 QDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNA 369

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           +CK+G + +A  L   +  IG++P+  +Y T+++G C  G ++ A E F +ME +GC  D
Sbjct: 370 MCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPD 429

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
            FSY ++I G+ ++K+   A+ L  EM  +G
Sbjct: 430 EFSYNVIIRGFLQHKDESRAVHLIGEMRDRG 460



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 125/254 (49%), Gaps = 6/254 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L    +          LF  + + G  PD+++Y+ILIN +CK  R+     +
Sbjct: 218 PDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQL 277

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++    TP+ V++ +LI GLC   R+ EA  LF  +   G  P+++TY  L++G C+
Sbjct: 278 FNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCK 337

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  LF  M +         KP+ + Y+ + + +CK G +  A+ELF ++    +
Sbjct: 338 QGYLGKAFRLFRAMQS------TYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGL 391

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V  YT++I G C     +EA   F  M D G  P+  ++NVI+    ++     A  
Sbjct: 392 QPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVH 451

Query: 255 LLELMIQIGVRPDA 268
           L+  M   G   DA
Sbjct: 452 LIGEMRDRGFITDA 465



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 7/198 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M+    +P  V S+N L   L +         LFK +++ G  P+LYTY IL++ F
Sbjct: 277 LFNEMIHQGSTPNNV-SYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGF 335

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +   F +   +  +   P+ V +  L+  +C    + +A  LF++L   G +P+V
Sbjct: 336 CKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNV 395

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YTT+INGLC+ G    AL  F  M +        C PD  +Y+ I  G  +     +A
Sbjct: 396 QIYTTIINGLCKEGLLDEALEAFRNMEDDG------CPPDEFSYNVIIRGFLQHKDESRA 449

Query: 183 KELFLKMKDENINPDVVT 200
             L  +M+D     D  T
Sbjct: 450 VHLIGEMRDRGFITDAGT 467


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 135/342 (39%), Positives = 202/342 (59%), Gaps = 9/342 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAK--NKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           F  MLRM P+P  +  FN + G + K  N HY T +SL  +L   G+ P + T+NIL+NC
Sbjct: 45  FHRMLRMRPTPS-IVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNC 103

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +C +G ++  F +  +IL+  + P  +TF +LI G+C   ++ EA      + A G   D
Sbjct: 104 YCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLD 163

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             +Y TLINGLC+ G T  AL + +++       G +   D + Y+ I + LCK+  V  
Sbjct: 164 QVSYRTLINGLCKIGETRAALQMLKKIE------GKLVNTDVVMYNIIINSLCKDKAVSD 217

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A +L+ +M  + I+PDVVT+ SLI GFC      EA  LF EM+ + + P+V TF+++++
Sbjct: 218 AYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVD 277

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK+G +  A  +L +M++ GV PD   Y++LMDG+CL   VN+AK +F +M   G   
Sbjct: 278 ALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAP 337

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              SY I+ING  K K ++ ALSL+ EM  KGI P  VTYN+
Sbjct: 338 HAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNS 379



 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 180/342 (52%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F IF  +L++   P  + +FN L   +  N      L     + ++G   D  +Y  LIN
Sbjct: 114 FSIFAKILKLGYHPTTI-TFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLIN 172

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+G       +L +I       D V +  +I  LC +  + +A  L++++      P
Sbjct: 173 GLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISP 232

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV T+ +LI G C  G    A  LF EM   N        PD  T+S + D LCK+G + 
Sbjct: 233 DVVTFNSLILGFCVVGQLKEAFGLFHEMVLKN------INPDVYTFSILVDALCKDGNIT 286

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AK +   M  + + PDVVTY+SL+ G+C  N+ N+AK +F  M   GV P+  ++N+++
Sbjct: 287 RAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMI 346

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N L K   +DEA  L + M   G+ PD   YN+L+DG C  GR++ A +L   M +NG  
Sbjct: 347 NGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIP 406

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            D+ +Y  LI+  CKN  I+ A++L  ++  +GI+P++ TYN
Sbjct: 407 ADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYN 448



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 176/360 (48%), Gaps = 41/360 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K       L + K++    +  D+  YNI+IN  CK   VS  + +   +
Sbjct: 166 SYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEM 225

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +PD VTF SLI G C   ++ EA  LF ++      PDV+T++ L++ LC+ G+ 
Sbjct: 226 ITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNI 285

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF------------ 186
             A N+   M       GV+  PD +TYS++ DG C    V+KAK +F            
Sbjct: 286 TRAKNMLAVMMKQ----GVI--PDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHA 339

Query: 187 ------------LKMKDE-----------NINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
                       +KM DE            I PD VTY SLI G C     + A  L  E
Sbjct: 340 HSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDE 399

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M + G+  +++T+N +++ LCKN  +D+A  L++ +   G++P    YN L+DG C  GR
Sbjct: 400 MHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGR 459

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  A+++F  +   G   + ++Y I+ING CK      A  L S+M + GI P  VTY T
Sbjct: 460 LKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYET 519



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 171/323 (52%), Gaps = 12/323 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L               LF  +    + PD+YT++IL++  CK G ++    +
Sbjct: 232 PDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNM 291

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD VT++SL+ G C  + + +A  +F+ +   G  P   +Y  +INGL +
Sbjct: 292 LAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGK 351

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
                 AL+LF+EM          CK   PD +TY+++ DGLCK G +  A +L  +M +
Sbjct: 352 IKMVDEALSLFKEMC---------CKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHN 402

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             I  D++TY SLI   C  +  ++A  L  ++ DQG+QP++ T+N++++ LCK G++  
Sbjct: 403 NGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKN 462

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  + + ++  G   +A  YN +++G C  G  N A+ L   ME+NG + D  +Y  +I 
Sbjct: 463 AQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIR 522

Query: 312 GYCKNKEIEGALSLYSEMLSKGI 334
              +  E E A  L  EM+ +G+
Sbjct: 523 ALFRKDENEKAEKLLREMIIRGL 545



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 145/286 (50%), Gaps = 6/286 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+IL   L K+ +     ++   +   G+ PD+ TY+ L++ +C +  V+    V
Sbjct: 267 PDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHV 326

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R    P A ++  +I GL     + EA +LF ++   G  PD  TY +LI+GLC+
Sbjct: 327 FSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCK 386

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L +EM N NG        D +TY+++ D LCK   +DKA  L  K+KD+ I
Sbjct: 387 LGRISYAWQLVDEMHN-NG-----IPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGI 440

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P + TY  LI G C       A+ +F +++ +G   N  T+N+++N LCK G  +EA  
Sbjct: 441 QPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEV 500

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           LL  M   G+ PDA  Y T++          +A++L   M   G +
Sbjct: 501 LLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGLL 546



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 69/135 (51%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  + ++N L   L KN H D  ++L K++   G+ P +YTYNILI+  CK GR+     
Sbjct: 406 PADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQD 465

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   +L   ++ +A T+  +I GLC E    EA  L +K+   G  PD  TY T+I  L 
Sbjct: 466 VFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALF 525

Query: 134 RTGHTIVALNLFEEM 148
           R      A  L  EM
Sbjct: 526 RKDENEKAEKLLREM 540



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 72/203 (35%), Gaps = 72/203 (35%)

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL----------------------------- 243
           D N     F  M+     P++V FN I+  +                             
Sbjct: 37  DVNNDVSSFHRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVT 96

Query: 244 --------CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR--------- 286
                   C  G+M  A  +   ++++G  P    +NTL++G CL G++           
Sbjct: 97  FNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVI 156

Query: 287 --------------------------AKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
                                     A ++   +E      DV  Y I+IN  CK+K + 
Sbjct: 157 ALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVS 216

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A  LYSEM++K I P VVT+N+
Sbjct: 217 DAYQLYSEMITKRISPDVVTFNS 239


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/343 (38%), Positives = 207/343 (60%), Gaps = 8/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+R  P P  V SF+ L   +   KHY +V+SLF+ ++ + +    +  +I++N
Sbjct: 57  FSLFRQMVRTKPLPS-VASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVN 115

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCK 119
             C M R   GF VL    +     + VTFT+LI+GL AE+++ +A  LF KL R   C+
Sbjct: 116 SCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICE 175

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+   Y T++NGLC+ GHT  A +L   M  G+       KP+  TY+ + D  CK+G +
Sbjct: 176 PNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGS------TKPNTRTYTIVIDAFCKDGML 229

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           D A  L  +MK ++I PD+ TY++LI   C  + W   + LF+EM+   + PNV TFN +
Sbjct: 230 DGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSV 289

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LCK GK+++A  ++  MI+ GV PD   YN ++DG+ L G+V+RA+E+F SM +   
Sbjct: 290 IDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSI 349

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             D+ SY ILINGY + K+I+ A+ +  E+  KG++P++VT N
Sbjct: 350 EPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCN 392



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 168/309 (54%), Gaps = 8/309 (2%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGL-FPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           ++ G  A+NK  D V  LFK+L    +  P+   Y  ++N  CK G     F +L  + +
Sbjct: 148 LIRGLFAENKVKDAV-HLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQ 206

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P+  T+T +I   C +  +  A +L  +++     PD+FTY+TLI+ LC+      
Sbjct: 207 GSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWEN 266

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
              LF EM + N        P+  T++++ DGLCKEG V+ A+E+   M ++ ++PDV+T
Sbjct: 267 VRTLFLEMIHLN------IYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVIT 320

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  +I G+      + A+ +F  M+++ ++P+++++N+++N   +  K+DEA ++   + 
Sbjct: 321 YNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREIS 380

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           Q G++P     N L+ G    GR   A+  F  M S G + D++++  L+ GY KN  +E
Sbjct: 381 QKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVE 440

Query: 321 GALSLYSEM 329
            A+S + ++
Sbjct: 441 EAMSHFHKL 449



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 170/339 (50%), Gaps = 6/339 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  ++R +   P    +  +   L K  H      L + +      P+  TY I+I+ F
Sbjct: 164 LFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAF 223

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     +L  + +    PD  T+++LI  LC  S+      LF ++      P+V
Sbjct: 224 CKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNV 283

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+ ++I+GLC+ G    A    EE+     E GV   PD ITY+ I DG    G VD+A
Sbjct: 284 CTFNSVIDGLCKEGKVEDA----EEIMRYMIEKGV--DPDVITYNMIIDGYGLRGQVDRA 337

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +E+F  M +++I PD+++Y  LI G+      +EA  +  E+  +G++P++VT NV+++ 
Sbjct: 338 REIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHG 397

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L + G+   A    + M+  G  PD   + TL+ G+   G V  A   F  +E      +
Sbjct: 398 LFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTN 457

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  Y  +I+G CKN +++ A + + ++   G+ P V+TY
Sbjct: 458 IQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITY 496



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 162/362 (44%), Gaps = 41/362 (11%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++    + P   ++ I+     K+   D   SL   +    + PD++TY+ LI+  CK+ 
Sbjct: 203 LMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLS 262

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +      +   ++     P+  TF S+I GLC E ++ +A  +   +   G  PDV TY 
Sbjct: 263 QWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYN 322

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            +I+G    G    A  +F+ M N + E      PD I+Y+ + +G  ++  +D+A ++ 
Sbjct: 323 MIIDGYGLRGQVDRAREIFDSMINKSIE------PDIISYNILINGYARQKKIDEAMQVC 376

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP--------------- 231
            ++  + + P +VT   L+ G         A+  F EM+  G  P               
Sbjct: 377 REISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKN 436

Query: 232 --------------------NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                               N+  +  +++ LCKNGK+D+A    E +  IG+ PD   Y
Sbjct: 437 GLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITY 496

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             ++ G+C  G ++ AK++   ME NGC+ D  +Y +++ G+ ++ ++    +   E+  
Sbjct: 497 TAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAG 556

Query: 332 KG 333
           K 
Sbjct: 557 KS 558



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 134/291 (46%), Gaps = 29/291 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P VC+FN +   L K    +    + + +   G+ PD+ TYN++I+ +   G+V     +
Sbjct: 281 PNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREI 340

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD +++  LI G   + +I EA  +  ++   G KP + T   L++GL  
Sbjct: 341 FDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE 400

Query: 135 TGHTIVALNLFEEMANGN-------------GEFGVVCKPDAIT---------------- 165
            G T  A N F+EM +               G F      +A++                
Sbjct: 401 LGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQI 460

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ + DGLCK G +DKA   F K+    ++PDV+TYT++I G+C     +EAK +  +M 
Sbjct: 461 YTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKME 520

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           D G   +  T+NVI+    ++ K+ E    LE +       +A+    LMD
Sbjct: 521 DNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 7/258 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M+      P + S+NIL    A+ K  D  + + + ++  GL P + T N+L++  
Sbjct: 340 IFDSMIN-KSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGL 398

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            ++GR          +L +   PD  T  +L+ G      + EA + F KL       ++
Sbjct: 399 FELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNI 458

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YT +I+GLC+ G    A   FE++        +   PD ITY+ +  G C+EG +D+A
Sbjct: 459 QIYTAVIDGLCKNGKLDKAHATFEKLP------LIGLHPDVITYTAMISGYCQEGLLDEA 512

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K++  KM+D     D  TY  ++RGF  +N  +E K    E+  +       T  ++M+ 
Sbjct: 513 KDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDI 572

Query: 243 LCKNGKMDEASRLLELMI 260
           + ++  +      ++L I
Sbjct: 573 IAEDPSITRKMHWIKLHI 590


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 138/340 (40%), Positives = 194/340 (57%), Gaps = 6/340 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M+ M+P P     F  LFG + K KHY T +SL K + S+G+ PD+YT  I+INC C
Sbjct: 59  FHKMVVMNPLPREK-DFTKLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTLTIIINCLC 117

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +     GF VLG + +    P  VTF +LI GLCAE  +  AA     L   G + + +
Sbjct: 118 HLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSY 177

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY  +INGLC+ G T  A+   E++   N +  VV     I YSTI D LCK+G V +A 
Sbjct: 178 TYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVV-----IAYSTIMDSLCKDGMVCEAL 232

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF  M  + I PD+V Y SLI G C    W EA  L   MM +G+ PNV TFNV+++  
Sbjct: 233 NLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNF 292

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK+G +  A  ++  M+ +GV PD   YN+++ G CL  ++  A ++F  M   G + ++
Sbjct: 293 CKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNL 352

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  LI+G+CK K I  AL L  EM++ G+ P VVT++T
Sbjct: 353 VTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWST 392



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 170/326 (52%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L     +    +L   +   G+ P++ T+N+L++ FCK G +S    +
Sbjct: 245 PDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTI 304

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +G ++     PD VT+ S+I G C  S++ +A  +F  +   G  P++ TY++LI+G C+
Sbjct: 305 MGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCK 364

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T +   AL L  EM N          PD +T+ST+  G CK G  + AKELF  M + + 
Sbjct: 365 TKNINKALFLLGEMVNSG------LNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQ 418

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P++ T   ++ G       +EA  LF EM    ++ NVV +N++++ +C  GK+++A  
Sbjct: 419 HPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQE 478

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++ D   Y T++ G C  G ++ A+ L + ME NGC+ + F+Y + + G  
Sbjct: 479 LFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLL 538

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           +  +I  +      M  KG+     T
Sbjct: 539 QRYDISRSTKYLLLMKGKGLSADATT 564



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 167/326 (51%), Gaps = 6/326 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +++ +   L K+      L+LF  + S G+ PDL  YN LI+  C  GR      +LG
Sbjct: 212 VIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLG 271

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++R    P+  TF  L+   C +  I  A  +   +   G +PDV TY ++I+G C   
Sbjct: 272 NMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLS 331

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ +FE M +     G +  P+ +TYS++  G CK   ++KA  L  +M +  +NP
Sbjct: 332 QMGDAVKVFELMIHK----GFL--PNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNP 385

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DVVT+++LI GFC A     AK LF  M +    PN+ T  +I++ L K     EA  L 
Sbjct: 386 DVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLF 445

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M ++ +  +  +YN ++DG C  G++N A+ELF  + S G   DV +Y  +I G CK 
Sbjct: 446 REMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKE 505

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
             ++ A +L  +M   G  P   TYN
Sbjct: 506 GLLDDAENLLMKMEENGCLPNEFTYN 531



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 63/127 (49%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +  H   P + +  I+   L K + +   +SLF+ +  + L  ++  YNI+++  C  G+
Sbjct: 413 MHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGK 472

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           ++    +   +       D V +T++IKGLC E  + +A  L  K+   GC P+ FTY  
Sbjct: 473 LNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNV 532

Query: 128 LINGLCR 134
            + GL +
Sbjct: 533 FVRGLLQ 539


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 138/341 (40%), Positives = 198/341 (58%), Gaps = 8/341 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCF 62
           F  M +M+P P  V  F +L G + K KHY T +SL K ++S +G+ PD +  N++IN  
Sbjct: 63  FHTMAKMNPLPS-VIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPDTFILNVVINSL 121

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +  V+ GF VLG +L+    P  VTFT LI GLC +  +  A  L   +   G + DV
Sbjct: 122 CHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDV 181

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LINGLC+ G T  A+    +M   N        P+ + YST+ DGLCK+G V +A
Sbjct: 182 KTYGVLINGLCKMGKTSEAVGWLRKMEERN------WNPNVVVYSTVMDGLCKDGLVSEA 235

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L L+M  + I P++VTYT LI+G C    W EA  L  EMM  GV P++ + N++++ 
Sbjct: 236 LGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDV 295

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK GK+ +A  ++  MI +G  PD   YN+L+D +CL  +++ A  +F  M S GC+ D
Sbjct: 296 LCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPD 355

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y  LI+G+CK K I  A+ L  EM+  G  P VVT+ T
Sbjct: 356 IVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTT 396



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 163/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+      L L   ++  G+ P+L TY  LI   C  GR      +
Sbjct: 214 PNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSL 273

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD  +   L+  LC E +IM+A ++   +   G  PDVFTY +LI+  C 
Sbjct: 274 LDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCL 333

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +FE M +        C PD + Y+++  G CK   ++KA  L  +M     
Sbjct: 334 QNQMDEATRVFELMVSRG------CLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGF 387

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVT+T+LI GFC       AK LF+ M   G  PN+ T  +I++ LCK+  + EA  
Sbjct: 388 TPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALS 447

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M +  +  +  +Y+ ++DG C  G++N A ELF  + + G   +V++Y I+ING+ 
Sbjct: 448 LFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFA 507

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ A  L S M   G  P   TYN
Sbjct: 508 KQGLLDKAEDLLSNMEENGCMPDSCTYN 535



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 166/319 (52%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L   L     +    SL   +  +G+ PDL + NIL++  CK G++     V
Sbjct: 249 PNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSV 308

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +G ++     PD  T+ SLI   C ++++ EA  +F  + + GC PD+  YT+LI+G C+
Sbjct: 309 IGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCK 368

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A++L +EM        V   PD +T++T+  G C+ G    AKELFL M     
Sbjct: 369 IKNINKAMHLLDEM------IKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQ 422

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ T   ++ G C +   +EA  LF  M    +  N+V +++I++ +C  GK++ A  
Sbjct: 423 VPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALE 482

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++ +   Y  +++GF   G +++A++L  +ME NGCM D  +Y + + G  
Sbjct: 483 LFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLV 542

Query: 315 KNKEIEGALSLYSEMLSKG 333
             +EI  ++   + M  KG
Sbjct: 543 AEREIARSIKYLTMMRDKG 561



 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 153/315 (48%), Gaps = 7/315 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M++M   P  + S NIL   L K        S+   +  +G  PD++TYN LI+ +
Sbjct: 273 LLDEMMKMGVMPD-LQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRY 331

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++     V   ++     PD V +TSLI G C    I +A  L  ++   G  PDV
Sbjct: 332 CLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDV 391

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+TTLI G C+ G  + A  LF  M     ++G V  P+  T + I DGLCK   + +A
Sbjct: 392 VTWTTLIGGFCQVGRPLAAKELFLNMH----KYGQV--PNLQTCAIILDGLCKSQLLSEA 445

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF  M+  N++ ++V Y+ ++ G C A   N A  LF  +  +G+Q NV  + +++N 
Sbjct: 446 LSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMING 505

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K G +D+A  LL  M + G  PD+  YN  + G      + R+ +    M   G   D
Sbjct: 506 FAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVD 565

Query: 303 VFSYGILINGYCKNK 317
             +  ++IN    N+
Sbjct: 566 ATTTEMIINYLSTNQ 580


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 132/340 (38%), Positives = 201/340 (59%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M RM+P P  +  F    G +AK K Y TV+ L  +++  G+   +Y+ NILINC C
Sbjct: 81  FYRMARMNPRPS-IVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLC 139

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++  V     V G++ +    PD +TFT+LI G+C E +I  A  L+ ++   G +PDV 
Sbjct: 140 RLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVI 199

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC +G+T +A+++F++M   NG     CKP+ +TY+TI D LCK+  V+ A 
Sbjct: 200 SYNTLINGLCNSGNTNMAVHVFKKMEQ-NG-----CKPNVVTYNTIIDSLCKDRLVNDAM 253

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +   +M    I PD +TY S++ G C     NEA  LF  M   G +P+VVT+N+I++ L
Sbjct: 254 DFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSL 313

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K+  +++A+  L  M+  G+ PD   Y T++ G C  G++N A  LF  ME  GC  DV
Sbjct: 314 YKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDV 373

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  +I+  CK++ +  A+   SEM+ +GI P  VTY+T
Sbjct: 374 VAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYST 413



 Score =  236 bits (603), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 201/376 (53%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +++ M+R     P V S+N L   L  + + +  + +FK++   G  P++ TYN +I+  
Sbjct: 185 LYNEMVR-SGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSL 243

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK   V+     L  ++     PDA+T+ S++ GLC   ++ EA  LF ++   GCKPDV
Sbjct: 244 CKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDV 303

Query: 123 FTY-----------------------------------TTLINGLCRTGHTIVALNLFEE 147
            TY                                   TT+++GLC  G    A+ LF++
Sbjct: 304 VTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKK 363

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M          CKPD + Y+TI D LCK+  V+ A E   +M D  I P+ VTY++++ G
Sbjct: 364 MEQKG------CKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHG 417

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           FC     +EA  LF EM+ + V PN +TF+++++ LC+ G + EA  + E M + GV P+
Sbjct: 418 FCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPN 477

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YN LM+G+CL  ++N A+++F  M   GC  D+ SY ILINGYC ++ ++ A +L +
Sbjct: 478 IYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLT 537

Query: 328 EMLSKGIRPTVVTYNT 343
           +M  K + P  VTYNT
Sbjct: 538 QMSVKKLTPNTVTYNT 553



 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 178/329 (54%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++N +   L      +    LFKR+   G  PD+ TYNI+I+   K   V+    
Sbjct: 265 PPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAAD 324

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
            L  ++     PD VT+T+++ GLC   ++ EA  LF K+   GCKPDV  Y T+I+ LC
Sbjct: 325 FLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLC 384

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A+    EM +          P+A+TYSTI  G C  G +D+A +LF +M   N
Sbjct: 385 KDRLVNDAMEFLSEMVDRG------IPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRN 438

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+ +T++ L+ G C     +EA+ +F  M ++GV+PN+ T+N +MN  C   KM+EA 
Sbjct: 439 VMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR 498

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           ++ E+M+  G  PD   YN L++G+C + R+++AK L   M       +  +Y  ++ G 
Sbjct: 499 KVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGL 558

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           C    +  A  L+ +M S G+ PT++TY+
Sbjct: 559 CYVGRLLDAQELFKKMCSSGMLPTLMTYS 587



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 168/314 (53%), Gaps = 6/314 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K++  +  +     +   G+ P+  TY+ +++ FC +G++     +
Sbjct: 371 PDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQL 430

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+ +TF+ L+ GLC E  + EA  +F  +   G +P+++TY  L+NG C 
Sbjct: 431 FKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCL 490

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +FE M  G G     C PD  +Y+ + +G C    +DKAK L  +M  + +
Sbjct: 491 RCKMNEARKVFEIMV-GKG-----CAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKL 544

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY ++++G CY     +A+ LF +M   G+ P ++T+++++N LCK+G +DEA +
Sbjct: 545 TPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALK 604

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M +  + PD  +Y  L++G  + G++  AK LF  + ++G      +Y ++I G  
Sbjct: 605 LFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLL 664

Query: 315 KNKEIEGALSLYSE 328
           K    + A  L+ +
Sbjct: 665 KEGLSDEAYELFRK 678



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 29/205 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L          +    +F+ +   G  PDL++YNILIN +C   R+     +
Sbjct: 476 PNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKAL 535

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++     TP+ VT+ +++KGLC   R+++A  LF K+ + G  P + TY+ L+NGLC+
Sbjct: 536 LTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCK 595

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----------------------------CKPDAIT 165
            GH   AL LF+ M     E  ++                              +P   T
Sbjct: 596 HGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRT 655

Query: 166 YSTITDGLCKEGFVDKAKELFLKMK 190
           Y+ +  GL KEG  D+A ELF K K
Sbjct: 656 YNVMIKGLLKEGLSDEAYELFRKWK 680



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD A   F +M   N  P +V +   +        ++    L  +M   GV   V + N+
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N LC+   +D A  +   M ++G++PD   + TL++G C  G++  A EL+  M  +G
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG 193

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              DV SY  LING C +     A+ ++ +M   G +P VVTYNT
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNT 238


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 204/341 (59%), Gaps = 8/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+   P P  V SF+ L   L   KHY +V+S+F+ ++ + +  D +  + ++N
Sbjct: 57  FSLFRQMVTTKPLPSAV-SFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALSTVVN 115

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCK 119
             C M R   GF VL    +     + VTFT+LI+GL AE+++ +A  LF KL R   C+
Sbjct: 116 SCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICE 175

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD   Y T+++GLC+ GHT  A +L   M  G      + KPD   Y+ + D  CK+G +
Sbjct: 176 PDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQG------ITKPDTCIYNIVIDAFCKDGML 229

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           D A  L  +MK +NI PD++TYTSLI G    + W + + LF+EM+   + P+V TFN +
Sbjct: 230 DGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSV 289

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LCK GK+++A  ++  MI+ GV P+   YN +MDG+CL G++ RA+ +F SM   G 
Sbjct: 290 IDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGI 349

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             D+ SY  LINGY + K+++ A+ L+ E+   G++P++VT
Sbjct: 350 EPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVT 390



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 172/339 (50%), Gaps = 6/339 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  ++R +   P    +  +   L K  H      L + +      PD   YNI+I+ F
Sbjct: 164 LFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAF 223

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     +L  + +    PD +T+TSLI GL   S+  +   LF ++      PDV
Sbjct: 224 CKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDV 283

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+ ++I+GLC+ G    A    EE+     E GV  +P+ ITY+ + DG C  G + +A
Sbjct: 284 CTFNSVIDGLCKEGKVEDA----EEIMTYMIEKGV--EPNEITYNVVMDGYCLRGQMGRA 337

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F  M D+ I PD+++YT+LI G+      ++A  LF E+   G++P++VT +V++  
Sbjct: 338 RRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRG 397

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L + G+ + A    + M   G  P+   + TL+ G+   G V  A   F  +E      +
Sbjct: 398 LFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTN 457

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  Y  +ING CKN +++ A + + ++   G+ P V+TY
Sbjct: 458 IQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITY 496



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 163/320 (50%), Gaps = 6/320 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + ++  L   L K   ++ V +LF  +  + ++PD+ T+N +I+  CK G+V     
Sbjct: 245 PPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEE 304

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++  ++     P+ +T+  ++ G C   ++  A  +F  +   G +PD+ +YT LING  
Sbjct: 305 IMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYV 364

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                  A+ LF E++  NG      KP  +T S +  GL + G  + AK  F +M+   
Sbjct: 365 EKKKMDKAMQLFREISQ-NG-----LKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAG 418

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P++ T+ +L+ G+       EA   F ++  +    N+  +  ++N LCKNGK+D+A 
Sbjct: 419 HIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAH 478

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
              E +  IG+ PD   Y  ++ G+C  G ++ AK++   ME NGC+ D  +Y +++ G+
Sbjct: 479 ATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGF 538

Query: 314 CKNKEIEGALSLYSEMLSKG 333
            ++ ++    +   E+  K 
Sbjct: 539 FRSSKVSEMKAFLKEIAGKS 558



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 163/309 (52%), Gaps = 8/309 (2%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGL-FPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           ++ G  A+NK  D V  LFK+L    +  PD   Y  +++  CK G     F +L  + +
Sbjct: 148 LIRGLFAENKVKDAV-HLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQ 206

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD   +  +I   C +  +  A +L  +++     PD+ TYT+LI+GL +      
Sbjct: 207 GITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEK 266

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
              LF EM + N        PD  T++++ DGLCKEG V+ A+E+   M ++ + P+ +T
Sbjct: 267 VRTLFLEMIHLN------IYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEIT 320

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  ++ G+C       A+ +F  M+D+G++P+++++  ++N   +  KMD+A +L   + 
Sbjct: 321 YNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREIS 380

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           Q G++P     + L+ G    GR   AK  F  M++ G + +++++  L+ GY KN  +E
Sbjct: 381 QNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVE 440

Query: 321 GALSLYSEM 329
            A+S + ++
Sbjct: 441 EAMSHFHKL 449



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 138/291 (47%), Gaps = 29/291 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P VC+FN +   L K    +    +   +   G+ P+  TYN++++ +C  G++     +
Sbjct: 281 PDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRI 340

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD +++T+LI G   + ++ +A  LF ++   G KP + T + L+ GL  
Sbjct: 341 FDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFE 400

Query: 135 TGHTIVALNLFEEM-ANGN------------GEFGVVCKPDAIT---------------- 165
            G T  A   F+EM A G+            G F      +A++                
Sbjct: 401 VGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQI 460

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ + +GLCK G +DKA   F K+    ++PDV+TYT++I G+C     +EAK +  +M 
Sbjct: 461 YTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKME 520

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           D G  P+  T+NVI+    ++ K+ E    L+ +       +A+    LMD
Sbjct: 521 DNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMD 571



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 7/244 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M+      P + S+  L     + K  D  + LF+ ++  GL P + T ++L+   
Sbjct: 340 IFDSMID-KGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGL 398

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            ++GR     +    +  +   P+  T  +L+ G      + EA + F KL       ++
Sbjct: 399 FEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNI 458

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YT +INGLC+ G    A   FE++        +   PD ITY+ +  G C+EG +D+A
Sbjct: 459 QIYTAVINGLCKNGKLDKAHATFEKLP------LIGLHPDVITYTAMISGYCQEGLLDEA 512

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K++  KM+D    PD  TY  ++RGF  ++  +E K    E+  +       T  ++M+ 
Sbjct: 513 KDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMDI 572

Query: 243 LCKN 246
           + ++
Sbjct: 573 IAED 576


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/377 (39%), Positives = 209/377 (55%), Gaps = 45/377 (11%)

Query: 3    IFDYMLRMHPSPPPVCS--FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            +FD  L   P P   C+  FN L   +AK  +Y TV  +++++N +G+ PDLYT NILI+
Sbjct: 933  LFDRSLCSEPMP---CTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIH 989

Query: 61   CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--- 117
            C C +  V  GF V G  L+  F PDAVT T+L+KG+  E+ I +A  LF ++   G   
Sbjct: 990  CCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLG 1049

Query: 118  -------------------------------CKPDVFTYTTLINGLCRTGHTIVALNLFE 146
                                           CK DVFTY  +I+ LC+ G T  AL++F 
Sbjct: 1050 DAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFS 1109

Query: 147  EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
            EM       G    PD + YS++ DGLC+ G + +A E F +M+   I+ DV TY SLI 
Sbjct: 1110 EM------IGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIH 1163

Query: 207  GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
            G   A  W E       M+D+G  P+  TF ++++ LCK GK+ EA ++LELM   G  P
Sbjct: 1164 GLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEP 1223

Query: 267  DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
            D   YNTLM+G CL G++  A +LF S+   G   +VFSY ILINGYCK+++I+ A   +
Sbjct: 1224 DILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFF 1283

Query: 327  SEMLSKGIRPTVVTYNT 343
             EM  KG++P+ VTYNT
Sbjct: 1284 EEMRPKGLKPSTVTYNT 1300



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 178/329 (54%), Gaps = 17/329 (5%)

Query: 19   SFNILFGCLAKNKHYDTVLSLFKRL--NSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
            ++ IL   L K +     + L +++  N  G   D++TY ++I+  CK G  +    +  
Sbjct: 1053 TYGILINGLCKARKTGLAIKLHEKMKGNCKG---DVFTYGMIIDALCKDGMTTEALDMFS 1109

Query: 77   RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
             ++ +   PD V ++SL+ GLC   R+ EA   F ++   G   DV+TY +LI+GL R G
Sbjct: 1110 EMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAG 1169

Query: 137  ---HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                    LNL  +             PDA T++ + DGLCKEG V +A+++   M+ + 
Sbjct: 1170 LWKEVTWFLNLMVDRG---------FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKG 1220

Query: 194  INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              PD++TY +L+ G C      +A  LF  + D+G++ NV ++N+++N  CK+ K+DEA 
Sbjct: 1221 KEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAF 1280

Query: 254  RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            R  E M   G++P    YNTL+   C +GRV  A++LFV M++ G    + +Y +L++G 
Sbjct: 1281 RFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGL 1340

Query: 314  CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            CKN  +E A+ L+  +     +P +  ++
Sbjct: 1341 CKNGHLEEAMDLFQSIKKTEHKPNIEVFS 1369



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 170/328 (51%), Gaps = 6/328 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V  ++ L   L +       L  FK +   G+  D+YTYN LI+   + G        
Sbjct: 1118 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWF 1177

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L  ++   F+PDA TFT LI GLC E ++ EA  +   +R  G +PD+ TY TL+NGLC 
Sbjct: 1178 LNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCL 1237

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G    A  LFE +A+         K +  +Y+ + +G CK+  +D+A   F +M+ + +
Sbjct: 1238 VGQLEDATKLFESLADRG------IKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGL 1291

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             P  VTY +LI   C +     A+ LF+EM   G    + T+ V+++ LCKNG ++EA  
Sbjct: 1292 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMD 1351

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L + + +   +P+  V++ L+DG C  G++  A + F  +  NG   D  +Y ILING C
Sbjct: 1352 LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLC 1411

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                +  A+ L  +M  KG  P  +T+N
Sbjct: 1412 NKGMLSEAVKLLWQMEEKGCLPDSITFN 1439



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 160/326 (49%), Gaps = 6/326 (1%)

Query: 17   VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
            V ++ ++   L K+      L +F  +   G+ PD+  Y+ L++  C+ GR+        
Sbjct: 1085 VFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFK 1144

Query: 77   RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
             +     + D  T+ SLI GL       E       +   G  PD FT+T LI+GLC+ G
Sbjct: 1145 EMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEG 1204

Query: 137  HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
                A  + E M +   E      PD +TY+T+ +GLC  G ++ A +LF  + D  I  
Sbjct: 1205 KVGEAQQILELMRHKGKE------PDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKL 1258

Query: 197  DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            +V +Y  LI G+C     +EA   F EM  +G++P+ VT+N ++  LC++G++  A +L 
Sbjct: 1259 NVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLF 1318

Query: 257  ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
              M   G     S Y  L+DG C  G +  A +LF S++      ++  + IL++G C+ 
Sbjct: 1319 VEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRA 1378

Query: 317  KEIEGALSLYSEMLSKGIRPTVVTYN 342
             ++E A   + E+   G+ P  + YN
Sbjct: 1379 GKLEEAWKQFDEISKNGLEPDTIAYN 1404



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 148/320 (46%), Gaps = 6/320 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P   +F IL   L K         + + +   G  PD+ TYN L+N  C +G++     +
Sbjct: 1188 PDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKL 1247

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               +       +  ++  LI G C + +I EA   F ++R  G KP   TY TLI  LC+
Sbjct: 1248 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQ 1307

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            +G    A  LF EM    G+F  +      TY  + DGLCK G +++A +LF  +K    
Sbjct: 1308 SGRVRTAQKLFVEMQTC-GQFLKLS-----TYCVLLDGLCKNGHLEEAMDLFQSIKKTEH 1361

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             P++  ++ L+ G C A    EA   F E+   G++P+ + +N+++N LC  G + EA +
Sbjct: 1362 KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVK 1421

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            LL  M + G  PD+  +N ++        ++ A +L   M +     D     +L+    
Sbjct: 1422 LLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLAS 1481

Query: 315  KNKEIEGALSLYSEMLSKGI 334
             + +   AL      L KG+
Sbjct: 1482 FDPQWHAALVSLPNALQKGV 1501



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 136/269 (50%), Gaps = 6/269 (2%)

Query: 7    MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
            ++R     P + ++N L   L      +    LF+ L   G+  ++++YNILIN +CK  
Sbjct: 1215 LMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQ 1274

Query: 67   RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            ++   F     +      P  VT+ +LI  LC   R+  A  LF +++  G    + TY 
Sbjct: 1275 KIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYC 1334

Query: 127  TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
             L++GLC+ GH   A++LF+ +           KP+   +S + DG+C+ G +++A + F
Sbjct: 1335 VLLDGLCKNGHLEEAMDLFQSIKKTEH------KPNIEVFSILLDGMCRAGKLEEAWKQF 1388

Query: 187  LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             ++    + PD + Y  LI G C     +EA  L  +M ++G  P+ +TFNVI+  L K 
Sbjct: 1389 DEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKE 1448

Query: 247  GKMDEASRLLELMIQIGVRPDASVYNTLM 275
             ++ EA +LLE M      PD +V + L+
Sbjct: 1449 NEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  261 bits (666), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 202/340 (59%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+R  P P  V  F+  F  +A  K ++ VL   K++   G+  ++YT NI+INCF
Sbjct: 52  LFQEMIRSRPLPSLV-DFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCF 110

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  +    + VLG++++  + PD  TF +LI GLC ES++ EA  L  ++   GC+P+V
Sbjct: 111 CRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNV 170

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY +++NG+C++G T +AL+L  +M   N       K D  TYSTI D LC++G +D A
Sbjct: 171 VTYNSIVNGICKSGDTSLALDLLRKMDERN------VKADVFTYSTIIDSLCRDGCIDAA 224

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M+ + I   +VTY SL+ G C A  WN+   L  +M  + + PNV+TFNV+++ 
Sbjct: 225 ISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDV 284

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K GK+ EA+ L + MI  G+ P+   YN+LMDG+C+  R++ A  +   M  N C  D
Sbjct: 285 FVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPD 344

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + ++  LI GYCK K ++  + L+ ++  +G+    VTY+
Sbjct: 345 IVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYS 384



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/297 (35%), Positives = 162/297 (54%), Gaps = 6/297 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN+L     K         L+K + + G+ P+  TYN L++ +C   R+S    +
Sbjct: 273 PNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNM 332

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R+  +PD VTFTSLIKG C   R+ E   LF K+   G   +  TY+ L+ G C+
Sbjct: 333 LDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQ 392

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G   +A  LF+EM +     GV+  PD +TY  + DGLC  G ++KA E+F  ++   +
Sbjct: 393 SGKLEIAEELFQEMVS----LGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 446

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           N D+V YT +I G C      +A  LF  +  +GV+PNV+T+ V+++ LCK G + EA+ 
Sbjct: 447 NLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 506

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           LL  M + G  P+   YNTL+      G +  + +L   M+S G   D  S  ++I+
Sbjct: 507 LLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 563



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 177/356 (49%), Gaps = 29/356 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L         + L  R+   G  P++ TYN ++N  CK G  S    +
Sbjct: 133 PDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDL 192

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++       D  T++++I  LC +  I  A +LF ++   G K  + TY +L+ GLC+
Sbjct: 193 LRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCK 252

Query: 135 TGHTIVALNLFEEMANG---------NGEFGVVCK--------------------PDAIT 165
            G     + L ++M +          N    V  K                    P+ IT
Sbjct: 253 AGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTIT 312

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+++ DG C +  + +A  +   M   N +PD+VT+TSLI+G+C     +E   LF ++ 
Sbjct: 313 YNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKIS 372

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            +G+  N VT+++++   C++GK++ A  L + M+ +GV PD   Y  L+DG C  G++ 
Sbjct: 373 KRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLE 432

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +A E+F  ++ +    D+  Y I+I G CK  ++E A +L+  +  KG++P V+TY
Sbjct: 433 KALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 488



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 171/327 (52%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +++ +   L ++   D  +SLFK + + G+   L TYN L+   CK G+ + G  +L 
Sbjct: 205 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLK 264

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P+ +TF  LI     E ++ EA  L+ ++   G  P+  TY +L++G C   
Sbjct: 265 DMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQN 324

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A N+ + M   N      C PD +T++++  G CK   VD+  +LF K+    +  
Sbjct: 325 RLSEANNMLDLMVRNN------CSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVA 378

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTY+ L++GFC +     A+ LF EM+  GV P+V+T+ ++++ LC NGK+++A  + 
Sbjct: 379 NTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIF 438

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E + +  +  D  +Y  +++G C  G+V  A  LF S+   G   +V +Y ++I+G CK 
Sbjct: 439 EDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 498

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  A  L  +M   G  P   TYNT
Sbjct: 499 GSLSEANILLRKMEEDGNEPNDCTYNT 525



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 165/315 (52%), Gaps = 6/315 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N L G L K   ++  + L K + S  + P++ T+N+LI+ F K G++     +   +
Sbjct: 242 TYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEM 301

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +P+ +T+ SL+ G C ++R+ EA  +   +    C PD+ T+T+LI G C+    
Sbjct: 302 ITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRV 361

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
              + LF +++    + G+V   + +TYS +  G C+ G ++ A+ELF +M    + PDV
Sbjct: 362 DEGMKLFRKIS----KRGLV--ANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDV 415

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           +TY  L+ G C      +A  +F ++    +  ++V + +I+  +CK GK+++A  L   
Sbjct: 416 MTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCS 475

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           +   GV+P+   Y  ++ G C  G ++ A  L   ME +G   +  +Y  LI  + ++ +
Sbjct: 476 LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGD 535

Query: 319 IEGALSLYSEMLSKG 333
           +  +  L  EM S G
Sbjct: 536 LTASAKLIEEMKSCG 550



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 138/267 (51%), Gaps = 6/267 (2%)

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++RS   P  V F+    G+ +  +         K+   G   +++T   +IN  CR  
Sbjct: 55  EMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCC 114

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            T  A ++  ++     E      PD  T++T+ +GLC E  V +A  L  +M +    P
Sbjct: 115 KTCFAYSVLGKVMKLGYE------PDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQP 168

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +VVTY S++ G C + D + A  L  +M ++ V+ +V T++ I++ LC++G +D A  L 
Sbjct: 169 NVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLF 228

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M   G++     YN+L+ G C  G+ N   +L   M S   + +V ++ +LI+ + K 
Sbjct: 229 KEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKE 288

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +++ A  LY EM++KGI P  +TYN+
Sbjct: 289 GKLQEANELYKEMITKGISPNTITYNS 315



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 10/189 (5%)

Query: 165 TYSTITDG-LC-----KEGFVD----KAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
           T S I+DG +C     + G VD     A +LF +M      P +V ++    G      +
Sbjct: 22  TISGISDGRVCYGERLRSGIVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQF 81

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           N       +M   G+  N+ T N+++N  C+  K   A  +L  ++++G  PD + +NTL
Sbjct: 82  NLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTL 141

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++G CL  +V+ A  L   M  NGC  +V +Y  ++NG CK+ +   AL L  +M  + +
Sbjct: 142 INGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNV 201

Query: 335 RPTVVTYNT 343
           +  V TY+T
Sbjct: 202 KADVFTYST 210


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 139/376 (36%), Positives = 213/376 (56%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ +L  +P+      FN + G L K+KHY TVLSL +++   G+ P+  T+NILINCF
Sbjct: 55  LFNSLLHQNPTLTAF-EFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCF 113

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++G +   F VL +IL+  + PD +T  + IKG C + +I +A     KL A G   D 
Sbjct: 114 CQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQ 173

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y TLINGLC+ G T  AL L   +       G + + +A+ Y+T+ DG+ K+  V+ A
Sbjct: 174 VSYGTLINGLCKVGETRAALQLLRRVD------GKLVQLNAVMYNTVIDGMSKDKHVNDA 227

Query: 183 KELFLKMKDENINPDVVTYTSLIRGF---------------------------------- 208
            +L+ +M  + I+PDVVTY++LIRGF                                  
Sbjct: 228 FDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDG 287

Query: 209 -CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C      +AK +   MM Q ++PNV TFN +++  CK+ KM E   +  +M++ G++P+
Sbjct: 288 FCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPN 347

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y +LMDG+CL  +VN+AK++F +M   G   +V SY I+ING+CK K+++ A+ L+ 
Sbjct: 348 VVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFI 407

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  K I P VVTYN+
Sbjct: 408 EMHHKHIIPDVVTYNS 423



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 182/344 (52%), Gaps = 9/344 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           F +   +L+M   P  +     + G CL    H    L+   +L ++G   D  +Y  LI
Sbjct: 123 FSVLAKILKMGYEPDIITLNTFIKGFCLKGQIH--QALNFHDKLVALGFHLDQVSYGTLI 180

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           N  CK+G       +L R+       +AV + ++I G+  +  + +A  L++++ A    
Sbjct: 181 NGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRIS 240

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PDV TY+ LI G    G    A++LF +M   N       KPD  T++ + DG CKEG +
Sbjct: 241 PDVVTYSALIRGFFIVGKLKDAIDLFNKMILEN------IKPDVYTFNILVDGFCKEGRL 294

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            KAK +   M  ++I P+V T+ +L+ GFC      E K +F  MM QG++PNVVT+  +
Sbjct: 295 KKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSL 354

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           M+  C   ++++A ++   M Q GV  +   YN +++GFC   +V++A +LF+ M     
Sbjct: 355 MDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHI 414

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + DV +Y  LI+G CK+ +I  A  L +EM  +G  P ++TYN+
Sbjct: 415 IPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNS 458



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 169/337 (50%), Gaps = 29/337 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K       L L +R++   +  +   YN +I+   K   V+  F +   +
Sbjct: 175 SYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEM 234

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +PD VT+++LI+G     ++ +A  LF K+     KPDV+T+  L++G C+ G  
Sbjct: 235 VAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRL 294

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A N+ + M   +       KP+  T++T+ DG CK+  + + K +F  M  + I P+V
Sbjct: 295 KKAKNVLDMMMIQD------IKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNV 348

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY SL+ G+C     N+AK +F  M  +GV  NV ++N+++N  CK  K+D+A +L   
Sbjct: 349 VTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIE 408

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG----------- 307
           M    + PD   YN+L+DG C +G+++ A +L   M   G   ++ +Y            
Sbjct: 409 MHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLK 468

Query: 308 ------------ILINGYCKNKEIEGALSLYSEMLSK 332
                       ILI G C++ ++E A  ++ ++L K
Sbjct: 469 DQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDLLVK 505



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 1/190 (0%)

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
            F ++ + + I YS+I+        VD A  LF  +  +N       +  ++     +  
Sbjct: 25  SFLILLQKNFIPYSSISTTFHSND-VDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKH 83

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           ++    L  +M  +G+ PN VTFN+++N  C+ G +  A  +L  ++++G  PD    NT
Sbjct: 84  YHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNT 143

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
            + GFCL G++++A      + + G   D  SYG LING CK  E   AL L   +  K 
Sbjct: 144 FIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKL 203

Query: 334 IRPTVVTYNT 343
           ++   V YNT
Sbjct: 204 VQLNAVMYNT 213



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 26/170 (15%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +F  M++    P  V   +++ G CL K    +    +F  ++  G+  ++++YNI+IN 
Sbjct: 335 VFAMMMKQGIKPNVVTYCSLMDGYCLVK--QVNKAKKIFNTMSQRGVTANVHSYNIMING 392

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA--------------- 106
           FCK+ +V     +   +      PD VT+ SLI GLC   +I  A               
Sbjct: 393 FCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPN 452

Query: 107 --------AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
                    AL TKL+  G +P++ T T LI GLC++G    A  +FE++
Sbjct: 453 IITYNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDL 502


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 212/377 (56%), Gaps = 42/377 (11%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            +F  M++  P P  +  F+ L   +AK   +D V+SL +++ ++G+  + YTY+IL+NC
Sbjct: 67  ALFGEMVKSRPFPS-IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNC 125

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL------------ 109
           FC+  ++     VLG++++  + PD VT +SL+ G C   RI EA AL            
Sbjct: 126 FCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPD 185

Query: 110 -----------------------FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
                                    ++ A GC+PD+FTY T++NGLC+ G   +AL+L +
Sbjct: 186 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 245

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           +M  G  E  VV       Y+TI DGLCK   +D A +LF KM+ + I PDV TY SLI 
Sbjct: 246 KMEKGKIEANVV------IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLIS 299

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
             C    W++A  L  +M+++ + PNVVTFN +++   K GK+ EA +L + MIQ  + P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 359

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           +   YN+L++GFC+  R++ A+++F  M S  C+ DV +Y  LI G+CK K +E  + L+
Sbjct: 360 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELF 419

Query: 327 SEMLSKGIRPTVVTYNT 343
            EM  +G+    VTYNT
Sbjct: 420 REMSQRGLVGNTVTYNT 436



 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 177/327 (54%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N +   L K KH D    LF ++ + G+ PD++TYN LI+C C  GR S    +L 
Sbjct: 256 VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLS 315

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VTF SLI     E +++EA  LF ++      P++ TY +LING C   
Sbjct: 316 DMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 375

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +F  M + +      C PD +TY+T+  G CK   V++  ELF +M    +  
Sbjct: 376 RLDEAQQIFTLMVSKD------CLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 429

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTY +LI+G   A D + A+ +F +M+  GV P+++T++++++ LCK GK+++A  + 
Sbjct: 430 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 489

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E + +  + P+   YN +++G C  G+V    +LF S+   G   +V  Y  +I+G+C+ 
Sbjct: 490 EYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 549

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
              E A +L+ EM   G  P    YNT
Sbjct: 550 GLKEEADALFREMKEDGTLPDSGCYNT 576



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 186/377 (49%), Gaps = 42/377 (11%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M+ M   P  V    ++ G    NK  + V +L  R+ + G  PDL+TY  ++N 
Sbjct: 172 ALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAV-ALIDRMVARGCQPDLFTYGTVVNG 230

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +     +L ++ +     + V + ++I GLC    + +A  LF K+   G KPD
Sbjct: 231 LCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 290

Query: 122 VFTYTTLINGLC-----------------------------------RTGHTIVALNLFE 146
           VFTY +LI+ LC                                   + G  I A  LF+
Sbjct: 291 VFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 350

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM   +        P+ +TY+++ +G C    +D+A+++F  M  ++  PDVVTY +LI+
Sbjct: 351 EMIQRS------IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIK 404

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           GFC A    E   LF EM  +G+  N VT+N ++  L + G  D A ++ + M+  GV P
Sbjct: 405 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 464

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y+ L+DG C  G++ +A  +F  ++ +    ++++Y I+I G CK  ++E    L+
Sbjct: 465 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 327 SEMLSKGIRPTVVTYNT 343
             +  KG++P V+ Y T
Sbjct: 525 CSLSLKGVKPNVIIYTT 541



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 141/277 (50%), Gaps = 6/277 (2%)

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++     + G +++S   P  + F+ L+  +   ++     +L  +++  G   + +TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            L+N  CR     +AL +  +M     E      PD +T S++ +G C    + +A  L 
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYE------PDIVTLSSLLNGYCHGKRISEAVALV 174

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M +    PD VT+ +LI G    N  +EA  L   M+ +G QP++ T+  ++N LCK 
Sbjct: 175 DQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKR 234

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A  LL+ M +  +  +  +YNT++DG C    ++ A +LF  ME+ G   DVF+Y
Sbjct: 235 GDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 294

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI+  C       A  L S+M+ + I P VVT+N+
Sbjct: 295 NSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNS 331



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 132/245 (53%), Gaps = 6/245 (2%)

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
           +E ++ +A ALF ++      P +  ++ L++ + +     V ++L E+M N     G+ 
Sbjct: 58  SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN----LGI- 112

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  TYS + +  C+   +  A  +  KM      PD+VT +SL+ G+C+    +EA 
Sbjct: 113 -PHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 171

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M++ G +P+ VTFN +++ L  + K  EA  L++ M+  G +PD   Y T+++G 
Sbjct: 172 ALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 231

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G ++ A  L   ME      +V  Y  +I+G CK K ++ A  L+++M +KGI+P V
Sbjct: 232 CKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDV 291

Query: 339 VTYNT 343
            TYN+
Sbjct: 292 FTYNS 296



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 31/279 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M++     P + ++N L      +   D    +F  + S    PD+ TYN LI  F
Sbjct: 348 LFDEMIQ-RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGF 406

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  RV  G  +   + +     + VT+ +LI+GL        A  +F K+ + G  PD+
Sbjct: 407 CKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDI 466

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE----------------------FGVVC- 159
            TY+ L++GLC+ G    AL +FE +     E                      + + C 
Sbjct: 467 ITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCS 526

Query: 160 ------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                 KP+ I Y+T+  G C++G  ++A  LF +MK++   PD   Y +LIR      D
Sbjct: 527 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGD 586

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              +  L  EM   G   +  T ++++N L  +G+++++
Sbjct: 587 KAASAELIKEMRSCGFVGDASTISMVINML-HDGRLEKS 624



 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 242 ELCKNG----KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           +L +NG    K+D+A  L   M++    P    ++ L+       + +    L   M++ 
Sbjct: 51  KLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL 110

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   + ++Y IL+N +C+  ++  AL++  +M+  G  P +VT ++
Sbjct: 111 GIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSS 156


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  260 bits (664), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 133/340 (39%), Positives = 202/340 (59%), Gaps = 6/340 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ +L      PP+  FN +   L K KH+ T LSL +++   G+  D +T+NILINCF 
Sbjct: 57  FNSLLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFS 116

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++G  S  F V G+IL+  F P+A+TF +LIKGLC +  I +A     K+ A G   D  
Sbjct: 117 QLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQV 176

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+ G    AL L + +       G + +P+A+ Y+ I D +CK   V+ A 
Sbjct: 177 SYGTLINGLCKVGRITAALQLLKRVD------GKLVQPNAVMYNMIIDNMCKAKLVNDAF 230

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M  + I+PD  T  SLI GFC      EA  L  +M+ + + P + TF+++++  
Sbjct: 231 DLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAF 290

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  +L + ++  +  D   YN+LMDG+CL   +N+AK++F SM S G + +V
Sbjct: 291 CKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANV 350

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  +ING CK K ++ A++L+ EM  + I P VVTYN+
Sbjct: 351 QSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNS 390



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 162/288 (56%), Gaps = 12/288 (4%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P +YT++IL++ FCK G+V    ++LG  ++     D VT+ SL+ G C    I +A  +
Sbjct: 278 PRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDI 337

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK---PDAITY 166
           F  + + G   +V +YTT+INGLC+      A+NLFEEM          C+   P+ +TY
Sbjct: 338 FDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMR---------CRKIIPNVVTY 388

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +++ DGL K G +    +L  +M D    P+++TY S++   C  +  ++A  L   + D
Sbjct: 389 NSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKD 448

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           QG++P++ T+ V++  LC++GK+++A ++ E ++  G   D   Y  ++ GFC+ G  + 
Sbjct: 449 QGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDA 508

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           A  L   ME NGC+ +  +Y I+I    +  E + A  L  EM+++G+
Sbjct: 509 ALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARGL 556



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 170/327 (51%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N++   + K K  +    L+ ++ +  + PD +T N LI  FC MG++     +
Sbjct: 208 PNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGL 267

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++     P   TF+ L+   C E ++ EA  +           DV TY +L++G C 
Sbjct: 268 LHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCL 327

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F+ MA+     GV+   +  +Y+T+ +GLCK   VD+A  LF +M+   I
Sbjct: 328 VKEINKAKDIFDSMASR----GVIA--NVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKI 381

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTY SLI G       +    L  EM D+G  PN++T+N I++ LCKN  +D+A  
Sbjct: 382 IPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIA 441

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  +   G+RPD   Y  L+ G C +G++  A+++F  +   G   DV++Y ++I G+C
Sbjct: 442 LLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFC 501

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
                + AL+L S+M   G  P   TY
Sbjct: 502 VKGLFDAALALLSKMEDNGCIPNAKTY 528


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/340 (40%), Positives = 198/340 (58%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD ML M P PPP   FN +   L  NKHY TV+SLFK+  S G  PDL T NIL+NCFC
Sbjct: 51  FDRMLLMRP-PPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFC 109

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +  ++  F VL  IL+  + P+A+T  +LIKGLC    I +A     ++ A G + +  
Sbjct: 110 HLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQV 169

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+TG T     L  ++       G   KPD + Y+TI   LCK   +  A 
Sbjct: 170 SYRTLINGLCKTGETKAVARLLRKLE------GHSVKPDVVMYNTIIHSLCKNKLLGDAC 223

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M  + I+P+VVTY +L+ GFC      EA  L  EM  + + P+V TFN +++ L
Sbjct: 224 DLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDAL 283

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K GKM  A  +L +M++  ++PD   YN+L+DG+    +V  AK +F SM  +G   +V
Sbjct: 284 GKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNV 343

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  +I+G CK K ++ A+SL+ EM  K + P +VTY +
Sbjct: 344 RTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTS 383



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 182/352 (51%), Gaps = 29/352 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P VC+FN L   L K         +   +    + PD+ TYN LI+ +  + +V     V
Sbjct: 271 PDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYV 330

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +S  TP+  T+T++I GLC E  + EA +LF +++     PD+ TYT+LI+GLC+
Sbjct: 331 FYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCK 390

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             H   A+ L ++M     E G+  +PD  +Y+ + D LCK G ++ AKE F ++  +  
Sbjct: 391 NHHLERAIALCKKMK----EQGI--QPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGY 444

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + +V TY  +I G C A+ + EA  L  +M  +G  P+ +TF  I+  L +  + D+A +
Sbjct: 445 HLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEK 504

Query: 255 LLELMIQIG-----------------------VRPDASVYNTLMDGFCLTGRVNRAKELF 291
           +L  MI  G                       ++PD   Y TLMDG+ L   +  AK +F
Sbjct: 505 ILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVF 564

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SM   G   +V  Y I+I+G CK K ++ A+SL+ EM  K + P +VTY +
Sbjct: 565 YSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTS 616



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 173/359 (48%), Gaps = 29/359 (8%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           L  H   P V  +N +   L KNK       L+  +   G+ P++ TYN L+  FC MG 
Sbjct: 194 LEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGH 253

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +   F +L  +      PD  TF +LI  L  E ++  A  +   +     KPDV TY +
Sbjct: 254 LKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNS 313

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+G         A  +F  MA      GV   P+  TY+T+ DGLCKE  VD+A  LF 
Sbjct: 314 LIDGYFFLNKVKNAKYVFYSMAQS----GVT--PNVRTYTTMIDGLCKEKMVDEAMSLFE 367

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +MK +N+ PD+VTYTSLI G C  +    A  L  +M +QG+QP+V ++ ++++ LCK G
Sbjct: 368 EMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGG 427

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           +++ A    + ++  G   +   YN +++G C       A +L   ME  GCM D  ++ 
Sbjct: 428 RLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFK 487

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKG-----------------------IRPTVVTYNT 343
            +I    +  E + A  +  EM+++G                       I+P VVTY T
Sbjct: 488 TIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGT 546



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 168/345 (48%), Gaps = 17/345 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L   L KN H +  ++L K++   G+ PD+Y+Y IL++  CK GR+      
Sbjct: 376 PDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEF 435

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+L   +  +  T+  +I GLC      EA  L +K+   GC PD  T+ T+I  L  
Sbjct: 436 FQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFE 495

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVV----------------CKPDAITYSTITDGLCKEG 177
                 A  +  EM A G  E   V                 KPD +TY T+ DG     
Sbjct: 496 KDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVN 555

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            +  AK +F  M    + P+V  YT +I G C     +EA  LF EM  + + PN+VT+ 
Sbjct: 556 ELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYT 615

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +++ LCKN  ++ A  LL+ M + G++PD   Y  L+DG C +GR+  AKE+F  +   
Sbjct: 616 SLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVK 675

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G   +V  Y  +IN  CK    + AL L  +M  KG  P  VT++
Sbjct: 676 GYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFD 720



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 157/365 (43%), Gaps = 41/365 (11%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P +C+ NIL  C     H     S+   +   G  P+  T N LI   C  G +    
Sbjct: 94  ATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKAL 153

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
               +++   F  + V++ +LI GLC        A L  KL     KPDV  Y T+I+ L
Sbjct: 154 YFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSL 213

Query: 133 CRT-----------------------------------GHTIVALNLFEEMANGNGEFGV 157
           C+                                    GH   A +L  EM   N     
Sbjct: 214 CKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKN----- 268

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              PD  T++T+ D L KEG +  AK +   M    I PDVVTY SLI G+ + N    A
Sbjct: 269 -INPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNA 327

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           K +F  M   GV PNV T+  +++ LCK   +DEA  L E M    + PD   Y +L+DG
Sbjct: 328 KYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDG 387

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C    + RA  L   M+  G   DV+SY IL++  CK   +E A   +  +L KG    
Sbjct: 388 LCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLN 447

Query: 338 VVTYN 342
           V TYN
Sbjct: 448 VQTYN 452



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 160/325 (49%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K      V  L ++L    + PD+  YN +I+  CK   +     +   +
Sbjct: 170 SYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEM 229

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +P+ VT+ +L+ G C    + EA +L  +++     PDV T+ TLI+ L + G  
Sbjct: 230 IVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKM 289

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  +   M           KPD +TY+++ DG      V  AK +F  M    + P+V
Sbjct: 290 KAAKIVLAVMMKA------CIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNV 343

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TYT++I G C     +EA  LF EM  + + P++VT+  +++ LCKN  ++ A  L + 
Sbjct: 344 RTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKK 403

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + G++PD   Y  L+D  C  GR+  AKE F  +   G   +V +Y ++ING CK   
Sbjct: 404 MKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADL 463

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
              A+ L S+M  KG  P  +T+ T
Sbjct: 464 FGEAMDLKSKMEGKGCMPDAITFKT 488



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 29/309 (9%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF-------------- 62
           V ++N++   L K   +   + L  ++   G  PD  T+  +I                 
Sbjct: 448 VQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILR 507

Query: 63  ---------CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
                     +  R+    +VL  + ++C  PD VT+ +L+ G    + +  A  +F  +
Sbjct: 508 EMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSM 567

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              G  P+V  YT +I+GLC+      A++LFEEM + N        P+ +TY+++ D L
Sbjct: 568 AQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKN------MFPNIVTYTSLIDAL 621

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK   +++A  L  +MK+  I PDV +YT L+ G C +     AK +F  ++ +G   NV
Sbjct: 622 CKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNV 681

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
             +  ++NELCK G  DEA  L   M   G  PDA  ++ ++         ++A+++   
Sbjct: 682 QVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXE 741

Query: 294 MESNGCMRD 302
           M + G M++
Sbjct: 742 MIARGLMKE 750



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 48/110 (43%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           ++ H   P V S+ IL   L K+   +    +F+RL   G   ++  Y  +IN  CK G 
Sbjct: 637 MKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGL 696

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
                 +  ++      PDAVTF  +I  L  +    +A  +  ++ A G
Sbjct: 697 FDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARG 746


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 202/340 (59%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ M+ M+P P  +  FN L   L + KHYD+V+S+++++   G+   +YT  ILINC C
Sbjct: 92  FNQMVHMNPFPC-ITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLC 150

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +  V  GF VLG+I +  F P  +TF +LI GLC E RI+EA      + + G +P V+
Sbjct: 151 HLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVY 210

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           T+T ++NGLC+ G T  A+   ++M   +      C+P+ ++YS I D LCK   V++A 
Sbjct: 211 THTMIVNGLCKIGKTSAAIVWMKKMVELD------CEPEVVSYSIIIDSLCKNRLVNEAV 264

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +LF  M+   I+P VVTY SLI G C +  W +A  LF EM++  ++P+VVTF+++++ L
Sbjct: 265 DLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDAL 324

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G + EA  +   MIQI + PD   Y++L+ G C +     +  L   M S     DV
Sbjct: 325 CKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDV 384

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++ I ++ +CK   +  A S+ + M+ +G+RP VVTYN+
Sbjct: 385 VTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNS 424



 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/329 (37%), Positives = 192/329 (58%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L   L         +     + S G  P +YT+ +++N  CK+G+ S   V 
Sbjct: 172 PSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVW 231

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + +++     P+ V+++ +I  LC    + EA  LF  +R+ G  P V TY +LI G+C 
Sbjct: 232 MKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCN 291

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  LF+EM   N       KPD +T+S + D LCKEG V +A  +F KM    +
Sbjct: 292 SGQWKQASILFKEMLEWN------MKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAM 345

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY+SLI G C ++ W E+  L  EM+ + ++P+VVTF++ ++  CK G + EA  
Sbjct: 346 EPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQS 405

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           ++ LMI+ G+RP+   YN+LMDG+CL  +++ A+++F  M + GC  DV SY ILI GYC
Sbjct: 406 IINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYC 465

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K++ I+ A  L+ EM  KG+ P  +T+ T
Sbjct: 466 KSERIDEAKQLFDEMSHKGLTPNSITHTT 494



 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 189/325 (58%), Gaps = 6/325 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++I+   L KN+  +  + LF  + SIG+ P + TYN LI   C  G+     ++
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASIL 301

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     PD VTF+ L+  LC E  ++EA ++F K+     +PD+ TY++LI+G+C+
Sbjct: 302 FKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCK 361

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     +  L  EM + N       +PD +T+S   D  CK+G V +A+ +   M +  +
Sbjct: 362 SSLWKESSTLLNEMLSRN------IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGL 415

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTY SL+ G+C  +  +EA+ +F  M+++G  P+V+++N+++   CK+ ++DEA +
Sbjct: 416 RPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQ 475

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M   G+ P++  + TL+ G C  GR   AKELF  M S+GC  D+ +Y  L++G+C
Sbjct: 476 LFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFC 535

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
           K+  ++ AL+L+  +    ++P  V
Sbjct: 536 KHGHLDEALALFEALKKSQLKPNHV 560



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 151/289 (52%), Gaps = 6/289 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+IL   L K       LS+F ++  I + PD+ TY+ LI+  CK         +
Sbjct: 312 PDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTL 371

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD VTF+  +   C +  + EA ++   +   G +P+V TY +L++G C 
Sbjct: 372 LNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCL 431

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F+ M N        C PD ++Y+ +  G CK   +D+AK+LF +M  + +
Sbjct: 432 HSQMDEARKVFDIMVNKG------CAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGL 485

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +T+T+LI G C A     AK LF +M   G  P+++T++ +++  CK+G +DEA  
Sbjct: 486 TPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALA 545

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           L E + +  ++P+  +   L+ G C  G++  AKELF S+       DV
Sbjct: 546 LFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPDV 594



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 35/199 (17%)

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           D A   F +M   N  P +  +  L+        ++    ++ +M   GV  +V T  ++
Sbjct: 86  DDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTIL 145

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG- 298
           +N LC    +     +L  + ++G +P    +NTL++G C+ GR+  A E    + S G 
Sbjct: 146 INCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGY 205

Query: 299 ----------------------------------CMRDVFSYGILINGYCKNKEIEGALS 324
                                             C  +V SY I+I+  CKN+ +  A+ 
Sbjct: 206 QPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVD 265

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           L+  M S GI PTVVTYN+
Sbjct: 266 LFYHMRSIGISPTVVTYNS 284



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 237 NVIMNELCKNGKM---DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           N  + + CK G     D+A      M+ +   P  + +N L+         +    ++  
Sbjct: 70  NFAVRDKCKGGSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRK 129

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ME  G    V++  ILIN  C    +    S+  ++   G +P+++T+NT
Sbjct: 130 MEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNT 179


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 134/371 (36%), Positives = 208/371 (56%), Gaps = 35/371 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  MLR  P P  V  FN L G + + +  D V+SL++++    +  D+Y++ ILI CF
Sbjct: 68  LFSDMLRSRPLPS-VIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCF 126

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G++ +    PD VTFT+L+ GLC + R+ EA  LF ++    C+PDV
Sbjct: 127 CSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDV 182

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMA---------------NGNGEFGVVC-------- 159
            T+TTL+NGLCR G  + A+ L + M                +G  + G           
Sbjct: 183 LTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRK 242

Query: 160 -------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                  KP+ + YS I DGLCK+G    +  LF++M+D+ I P++VTY  +I GFC + 
Sbjct: 243 MEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISG 302

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W+ A+ L  EM+++ + PNVVT+N ++N   K GK  EA+ L + M+  G+ P+   YN
Sbjct: 303 RWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYN 362

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++DGFC   R++ A+++F  M + GC  DVF++  LI+GYC  K I+  + L  EM  +
Sbjct: 363 SMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRR 422

Query: 333 GIRPTVVTYNT 343
           G+    VTYNT
Sbjct: 423 GLVANTVTYNT 433



 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 174/379 (45%), Gaps = 53/379 (13%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H  P  V    I+ G     +H D+  +LF  +   G+FP++ TYN +I  FC  GR S 
Sbjct: 248 HIKPNVVIYSAIIDGLCKDGRHSDS-HNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSA 306

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L  +L    +P+ VT+ +LI     E +  EAA L+ ++   G  P+  TY ++I+
Sbjct: 307 AQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G C+      A ++F  MA         C PD  T++T+ DG C    +D   EL  +M 
Sbjct: 367 GFCKQDRLDAAEDMFYLMATKG------CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP 420

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
              +  + VTY +LI GFC   D N A  L  +M+  GV P++VT N +++ LC NGK+ 
Sbjct: 421 RRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 480

Query: 251 ----------------------------------------------EASRLLELMIQIGV 264
                                                         EA  L E M   G+
Sbjct: 481 DALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGI 540

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            PD   Y++++DG C   R++ A ++FVSM S     +V ++  LINGYCK   ++  L 
Sbjct: 541 VPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLE 600

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           L+ EM  +GI    + Y T
Sbjct: 601 LFCEMGRRGIVADAIIYIT 619



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 170/337 (50%), Gaps = 17/337 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K   +     L+  +   G+ P+  TYN +I+ FCK  R+     +
Sbjct: 321 PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 380

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +PD  TFT+LI G C   RI +   L  ++   G   +  TY TLI+G C 
Sbjct: 381 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 440

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
            G    AL+L ++M +       VC PD +T +T+ DGLC  G +  A E+F  M+    
Sbjct: 441 VGDLNAALDLSQQMISSG-----VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 494

Query: 194 ----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                     + PDV+TY  LI G      + EA+ L+ EM  +G+ P+ +T++ +++ L
Sbjct: 495 DLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 554

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++DEA+++   M      P+   +NTL++G+C  GRV+   ELF  M   G + D 
Sbjct: 555 CKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADA 614

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             Y  LI G+ K   I GAL ++ EM+S G+ P  +T
Sbjct: 615 IIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTIT 651



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 164/320 (51%), Gaps = 5/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K    D    +F  + + G  PD++T+  LI+ +C   R+  G  +
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R     + VT+ +LI G C    +  A  L  ++ + G  PD+ T  TL++GLC 
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G    AL +F+ M     +          +PD +TY+ +  GL  EG   +A+EL+ +M
Sbjct: 476 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM 535

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I PD +TY+S+I G C  +  +EA  +F+ M  +   PNVVTFN ++N  CK G++
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 595

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+   L   M + G+  DA +Y TL+ GF   G +N A ++F  M S+G   D  +   +
Sbjct: 596 DDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 655

Query: 310 INGYCKNKEIEGALSLYSEM 329
           + G+   +E+E A+++  ++
Sbjct: 656 LTGFWSKEELERAVAMLEDL 675



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 150/301 (49%), Gaps = 17/301 (5%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P V +F  L       K  D  + L   +   GL  +  TYN LI+ FC +
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--------- 116
           G ++    +  +++ S   PD VT  +L+ GLC   ++ +A  +F  ++           
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 117 --GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
             G +PDV TY  LI GL   G  + A  L+EEM +     G+V  PD ITYS++ DGLC
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 555

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  +D+A ++F+ M  ++ +P+VVT+ +LI G+C A   ++   LF EM  +G+  + +
Sbjct: 556 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 615

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
            +  ++    K G ++ A  + + MI  GV PD      ++ GF     + RA  +   +
Sbjct: 616 IYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675

Query: 295 E 295
           +
Sbjct: 676 Q 676


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 134/371 (36%), Positives = 208/371 (56%), Gaps = 35/371 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  MLR  P P  V  FN L G + + +  D V+SL++++    +  D+Y++ ILI CF
Sbjct: 68  LFSDMLRSRPLPS-VIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCF 126

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G++ +    PD VTFT+L+ GLC + R+ EA  LF ++    C+PDV
Sbjct: 127 CSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDV 182

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMA---------------NGNGEFGVVC-------- 159
            T+TTL+NGLCR G  + A+ L + M                +G  + G           
Sbjct: 183 LTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRK 242

Query: 160 -------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                  KP+ + YS I DGLCK+G    +  LF++M+D+ I P++VTY  +I GFC + 
Sbjct: 243 MEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISG 302

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W+ A+ L  EM+++ + PNVVT+N ++N   K GK  EA+ L + M+  G+ P+   YN
Sbjct: 303 RWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYN 362

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++DGFC   R++ A+++F  M + GC  DVF++  LI+GYC  K I+  + L  EM  +
Sbjct: 363 SMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRR 422

Query: 333 GIRPTVVTYNT 343
           G+    VTYNT
Sbjct: 423 GLVANTVTYNT 433



 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 174/379 (45%), Gaps = 53/379 (13%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H  P  V    I+ G     +H D+  +LF  +   G+FP++ TYN +I  FC  GR S 
Sbjct: 248 HIKPNVVIYSAIIDGLCKDGRHSDS-HNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSA 306

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L  +L    +P+ VT+ +LI     E +  EAA L+ ++   G  P+  TY ++I+
Sbjct: 307 AQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G C+      A ++F  MA         C PD  T++T+ DG C    +D   EL  +M 
Sbjct: 367 GFCKQDRLDAAEDMFYLMATKG------CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP 420

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
              +  + VTY +LI GFC   D N A  L  +M+  GV P++VT N +++ LC NGK+ 
Sbjct: 421 RRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 480

Query: 251 ----------------------------------------------EASRLLELMIQIGV 264
                                                         EA  L E M   G+
Sbjct: 481 DALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGI 540

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            PD   Y++++DG C   R++ A ++FVSM S     +V ++  LINGYCK   ++  L 
Sbjct: 541 VPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLE 600

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           L+ EM  +GI    + Y T
Sbjct: 601 LFCEMGRRGIVADAIIYIT 619



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 170/337 (50%), Gaps = 17/337 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K   +     L+  +   G+ P+  TYN +I+ FCK  R+     +
Sbjct: 321 PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 380

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +PD  TFT+LI G C   RI +   L  ++   G   +  TY TLI+G C 
Sbjct: 381 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 440

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
            G    AL+L ++M +       VC PD +T +T+ DGLC  G +  A E+F  M+    
Sbjct: 441 VGDLNAALDLSQQMISSG-----VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 494

Query: 194 ----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                     + PDV+TY  LI G      + EA+ L+ EM  +G+ P+ +T++ +++ L
Sbjct: 495 DLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 554

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++DEA+++   M      P+   +NTL++G+C  GRV+   ELF  M   G + D 
Sbjct: 555 CKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADA 614

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             Y  LI G+ K   I GAL ++ EM+S G+ P  +T
Sbjct: 615 IIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTIT 651



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 164/320 (51%), Gaps = 5/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K    D    +F  + + G  PD++T+  LI+ +C   R+  G  +
Sbjct: 356 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 415

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R     + VT+ +LI G C    +  A  L  ++ + G  PD+ T  TL++GLC 
Sbjct: 416 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 475

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G    AL +F+ M     +          +PD +TY+ +  GL  EG   +A+EL+ +M
Sbjct: 476 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM 535

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I PD +TY+S+I G C  +  +EA  +F+ M  +   PNVVTFN ++N  CK G++
Sbjct: 536 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 595

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+   L   M + G+  DA +Y TL+ GF   G +N A ++F  M S+G   D  +   +
Sbjct: 596 DDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 655

Query: 310 INGYCKNKEIEGALSLYSEM 329
           + G+   +E+E A+++  ++
Sbjct: 656 LTGFWSKEELERAVAMLEDL 675



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 150/301 (49%), Gaps = 17/301 (5%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P V +F  L       K  D  + L   +   GL  +  TYN LI+ FC +
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--------- 116
           G ++    +  +++ S   PD VT  +L+ GLC   ++ +A  +F  ++           
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 117 --GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
             G +PDV TY  LI GL   G  + A  L+EEM +     G+V  PD ITYS++ DGLC
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 555

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  +D+A ++F+ M  ++ +P+VVT+ +LI G+C A   ++   LF EM  +G+  + +
Sbjct: 556 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 615

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
            +  ++    K G ++ A  + + MI  GV PD      ++ GF     + RA  +   +
Sbjct: 616 IYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675

Query: 295 E 295
           +
Sbjct: 676 Q 676



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 45/102 (44%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L     K    D  L LF  +   G+  D   Y  LI  F K+G ++    +
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDI 636

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
              ++ S   PD +T  +++ G  ++  +  A A+   L+ +
Sbjct: 637 FQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQRY 678


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 130/339 (38%), Positives = 213/339 (62%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ +LR +P+PP +  FN + G L K+KHY TVL L K++   G+ P+L   NILINCF
Sbjct: 74  LFNCLLRQNPTPPAI-EFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNILINCF 132

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++G +   F V  +IL+  + P+ +TFT+LIKGLC + +I +A     KL A G + + 
Sbjct: 133 CQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQ 192

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y TLI+GLC+ G T  AL+L   +       G + +P+ + YSTI DG+CK+  V+ A
Sbjct: 193 ISYGTLIDGLCKVGETRAALDLLRRVD------GKLVQPNVVMYSTIIDGMCKDKHVNDA 246

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L+ +M  + I+P+VVTY++LI GF       +A  LF +M+ + ++P+V TFN++++ 
Sbjct: 247 FDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDV 306

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK+GK+  A +L++ M   G  P+   Y++++D  C T RV++A  L   ++  G   +
Sbjct: 307 FCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPN 366

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +Y ILI+G C + ++E A +++ ++L KG   TVVTY
Sbjct: 367 MHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTY 405



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 154/333 (46%), Gaps = 18/333 (5%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H  P    SF  L     KN H++ +     ++N       L  Y+     F     V  
Sbjct: 23  HFVPKKFPSFQFL-----KNTHFNFIPCSSSKIN-------LIPYSSTSTTFHSNNDVDD 70

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   +LR   TP A+ F  ++  L           L  K+   G KP++     LIN
Sbjct: 71  AVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNILIN 130

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
             C+ G    A ++F ++        +   P+ IT++T+  GLC +G + +A     K+ 
Sbjct: 131 CFCQLGLIPFAFSVFAKI------LKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLV 184

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
                 + ++Y +LI G C   +   A  L   +  + VQPNVV ++ I++ +CK+  ++
Sbjct: 185 ALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVN 244

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           +A  L   M+  G+ P+   Y+ L+ GF   G++  A +LF  M S     DV+++ IL+
Sbjct: 245 DAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILV 304

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +CK+ +I  AL L  EM  +G  P +VTY++
Sbjct: 305 DVFCKSGKISYALKLVDEMHDRGQPPNIVTYSS 337


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 209/376 (55%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P  P +  FN L   +AK   +D V+SL +R+ ++ +  DLY+YNILINCF
Sbjct: 67  LFGEMVQSRP-LPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCF 125

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI------------------- 103
           C+  ++     VLG++++  + PD VT +SL+ G C   RI                   
Sbjct: 126 CRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNT 185

Query: 104 ----------------MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
                            EA AL  ++ A GC+PD+FTY T++NGLC+ G   +AL+L ++
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 245

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M  G  E       D + Y+TI D LC    V+ A  LF +M ++ I P+VVTY SLIR 
Sbjct: 246 MEKGKIE------ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++A  L  +M+++ + PNVVTF+ +++   K GK+ EA +L + MI+  + PD
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y++L++GFC+  R++ AK +F  M S  C  +V +Y  LI G+CK K +E  + L+ 
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 419

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  +G+    VTYNT
Sbjct: 420 EMSQRGLVGNTVTYNT 435



 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 181/327 (55%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +  +   L   K+ +  L+LF  +++ G+ P++ TYN LI C C  GR S    +L 
Sbjct: 255 VVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLS 314

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VTF++LI     E +++EA  L+ ++      PD+FTY++LING C   
Sbjct: 315 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A ++FE M + +      C P+ +TY+T+  G CK   V++  ELF +M    +  
Sbjct: 375 RLDEAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTY +LI+G   A D + A+ +F +M+  GV P+++T++++++ LCK GK+++A  + 
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E + +  + PD   YN +++G C  G+V    +LF S+   G   +V  Y  +I+G+C+ 
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
              E A +L+ EM   G  P   TYNT
Sbjct: 549 GLKEEADALFREMKEDGTLPNSGTYNT 575



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 179/371 (48%), Gaps = 30/371 (8%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M  M   P  V    ++ G    NK  + V +L  R+ + G  PDL+TY  ++N 
Sbjct: 171 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAV-ALIDRMVARGCQPDLFTYGTVVNG 229

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +     +L ++ +     D V +T++I  LC    + +A  LFT++   G +P+
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 289

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC---------------------- 159
           V TY +LI  LC  G    A  L  +M        VV                       
Sbjct: 290 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349

Query: 160 -------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   PD  TYS++ +G C    +D+AK +F  M  ++  P+VVTY +LI+GFC A 
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              E   LF EM  +G+  N VT+N ++  L + G  D A ++ + M+  GV PD   Y+
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+DG C  G++ +A  +F  ++ +    D+++Y I+I G CK  ++E    L+  +  K
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529

Query: 333 GIRPTVVTYNT 343
           G++P V+ Y T
Sbjct: 530 GVKPNVIIYTT 540



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 159/318 (50%), Gaps = 12/318 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L     K         L+  +    + PD++TY+ LIN FC   R+     +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 75  LGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
              ++ + CF P+ VT+ +LIKG C   R+ E   LF ++   G   +  TY TLI GL 
Sbjct: 383 FELMISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 441

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A  +F++M +     GV   PD ITYS + DGLCK G ++KA  +F  ++   
Sbjct: 442 QAGDCDMAQKIFKKMVSD----GV--PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK 495

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD+ TY  +I G C A    +   LF  +  +GV+PNV+ +  +++  C+ G  +EA 
Sbjct: 496 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEAD 555

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   M + G  P++  YNTL+      G    + EL   M S G + D  +  ++IN  
Sbjct: 556 ALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN-M 614

Query: 314 CKNKEIEGALSLYSEMLS 331
             +  +E +   Y EMLS
Sbjct: 615 LHDGRLEKS---YLEMLS 629



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 140/283 (49%), Gaps = 11/283 (3%)

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTF-TSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           F ++ + SP F + G      F+  +  +   L + +  + ++ +A  LF ++      P
Sbjct: 23  FAQLRKASPLFSLRG----VYFSAASYDYREKLSRNVLLDLKLDDAVDLFGEMVQSRPLP 78

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            +  +  L++ + +     + ++L E M N    +      D  +Y+ + +  C+   + 
Sbjct: 79  SIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISY------DLYSYNILINCFCRRSQLP 132

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  +  KM      PD+VT +SL+ G+C+    +EA  L  +M     QPN VTFN ++
Sbjct: 133 LALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLI 192

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L  + K  EA  L++ M+  G +PD   Y T+++G C  G ++ A  L   ME     
Sbjct: 193 HGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 252

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            DV  Y  +I+  C  K +  AL+L++EM +KGIRP VVTYN+
Sbjct: 253 ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 295



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 70/135 (51%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +++IL   L K    +  L +F+ L    + PD+YTYNI+I   CK G+V  G+ 
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      P+ + +T++I G C +    EA ALF +++  G  P+  TY TLI    
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581

Query: 134 RTGHTIVALNLFEEM 148
           R G    +  L +EM
Sbjct: 582 RDGDKAASAELIKEM 596


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 209/376 (55%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P  P +  FN L   +AK   +D V+SL +R+ ++ +  DLY+YNILINCF
Sbjct: 51  LFGEMVQSRP-LPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCF 109

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI------------------- 103
           C+  ++     VLG++++  + PD VT +SL+ G C   RI                   
Sbjct: 110 CRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNT 169

Query: 104 ----------------MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
                            EA AL  ++ A GC+PD+FTY T++NGLC+ G   +AL+L ++
Sbjct: 170 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 229

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M  G  E       D + Y+TI D LC    V+ A  LF +M ++ I P+VVTY SLIR 
Sbjct: 230 MEKGKIE------ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 283

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++A  L  +M+++ + PNVVTF+ +++   K GK+ EA +L + MI+  + PD
Sbjct: 284 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 343

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y++L++GFC+  R++ AK +F  M S  C  +V +Y  LI G+CK K +E  + L+ 
Sbjct: 344 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 403

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  +G+    VTYNT
Sbjct: 404 EMSQRGLVGNTVTYNT 419



 Score =  203 bits (517), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 181/327 (55%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +  +   L   K+ +  L+LF  +++ G+ P++ TYN LI C C  GR S    +L 
Sbjct: 239 VVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLS 298

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VTF++LI     E +++EA  L+ ++      PD+FTY++LING C   
Sbjct: 299 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 358

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A ++FE M + +      C P+ +TY+T+  G CK   V++  ELF +M    +  
Sbjct: 359 RLDEAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 412

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTY +LI+G   A D + A+ +F +M+  GV P+++T++++++ LCK GK+++A  + 
Sbjct: 413 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 472

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E + +  + PD   YN +++G C  G+V    +LF S+   G   +V  Y  +I+G+C+ 
Sbjct: 473 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 532

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
              E A +L+ EM   G  P   TYNT
Sbjct: 533 GLKEEADALFREMKEDGTLPNSGTYNT 559



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 179/371 (48%), Gaps = 30/371 (8%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M  M   P  V    ++ G    NK  + V +L  R+ + G  PDL+TY  ++N 
Sbjct: 155 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAV-ALIDRMVARGCQPDLFTYGTVVNG 213

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +     +L ++ +     D V +T++I  LC    + +A  LFT++   G +P+
Sbjct: 214 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 273

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC---------------------- 159
           V TY +LI  LC  G    A  L  +M        VV                       
Sbjct: 274 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 333

Query: 160 -------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   PD  TYS++ +G C    +D+AK +F  M  ++  P+VVTY +LI+GFC A 
Sbjct: 334 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 393

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              E   LF EM  +G+  N VT+N ++  L + G  D A ++ + M+  GV PD   Y+
Sbjct: 394 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 453

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+DG C  G++ +A  +F  ++ +    D+++Y I+I G CK  ++E    L+  +  K
Sbjct: 454 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 513

Query: 333 GIRPTVVTYNT 343
           G++P V+ Y T
Sbjct: 514 GVKPNVIIYTT 524



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 159/318 (50%), Gaps = 12/318 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L     K         L+  +    + PD++TY+ LIN FC   R+     +
Sbjct: 307 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 366

Query: 75  LGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
              ++ + CF P+ VT+ +LIKG C   R+ E   LF ++   G   +  TY TLI GL 
Sbjct: 367 FELMISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 425

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A  +F++M +     GV   PD ITYS + DGLCK G ++KA  +F  ++   
Sbjct: 426 QAGDCDMAQKIFKKMVSD----GV--PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK 479

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD+ TY  +I G C A    +   LF  +  +GV+PNV+ +  +++  C+ G  +EA 
Sbjct: 480 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEAD 539

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   M + G  P++  YNTL+      G    + EL   M S G + D  +  ++IN  
Sbjct: 540 ALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN-M 598

Query: 314 CKNKEIEGALSLYSEMLS 331
             +  +E +   Y EMLS
Sbjct: 599 LHDGRLEKS---YLEMLS 613



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 140/283 (49%), Gaps = 11/283 (3%)

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTF-TSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           F ++ + SP F + G      F+  +  +   L + +  + ++ +A  LF ++      P
Sbjct: 7   FAQLRKASPLFSLRG----VYFSAASYDYREKLSRNVLLDLKLDDAVDLFGEMVQSRPLP 62

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            +  +  L++ + +     + ++L E M N    +      D  +Y+ + +  C+   + 
Sbjct: 63  SIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISY------DLYSYNILINCFCRRSQLP 116

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  +  KM      PD+VT +SL+ G+C+    +EA  L  +M     QPN VTFN ++
Sbjct: 117 LALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLI 176

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L  + K  EA  L++ M+  G +PD   Y T+++G C  G ++ A  L   ME     
Sbjct: 177 HGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 236

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            DV  Y  +I+  C  K +  AL+L++EM +KGIRP VVTYN+
Sbjct: 237 ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 279



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 70/135 (51%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +++IL   L K    +  L +F+ L    + PD+YTYNI+I   CK G+V  G+ 
Sbjct: 446 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 505

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      P+ + +T++I G C +    EA ALF +++  G  P+  TY TLI    
Sbjct: 506 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 565

Query: 134 RTGHTIVALNLFEEM 148
           R G    +  L +EM
Sbjct: 566 RDGDKAASAELIKEM 580


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 208/371 (56%), Gaps = 31/371 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  MLR  P P  V  F  L G + + +  D V+SL++++    +  D+Y++NILI CF
Sbjct: 66  LFSDMLRSRPLPS-VVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCF 124

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G+I +    PD VTFT+L+ GLC E R+ EA   F ++    C+P+V
Sbjct: 125 CSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNV 184

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVV----CK------------- 160
            T+TTL+NGLCR G  + A+ L + M     +     +G +    CK             
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRK 244

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   P+ + YS I D LCK+G    A+ LF +M+++ I PD+ TY S+I GFC + 
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W++A+ L  EM+++ + P+VVT+N ++N   K GK  EA+ L + M+  G+ P+   YN
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYN 364

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++DGFC   R++ A+++F  M + GC  DVF++  LI+GYC  K I+  + L  EM  +
Sbjct: 365 SMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRR 424

Query: 333 GIRPTVVTYNT 343
           G+    VTYNT
Sbjct: 425 GLVANTVTYNT 435



 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 180/355 (50%), Gaps = 30/355 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           SFNIL  C          LS F ++  +GL PD+ T+  L++  C   RVS       ++
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
             +   P+ VTFT+L+ GLC E RI+EA AL  ++   G +P   TY T+++G+C+ G T
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 139 IVALNLFEEMANGN----------GEFGVVCK--------------------PDAITYST 168
           + ALNL  +M   +               +CK                    PD  TY++
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +  G C  G    A++L  +M +  I+PDVVTY +LI  F     + EA  L+ EM+ +G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRG 355

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           + PN +T+N +++  CK  ++D A  +  LM   G  PD   + TL+DG+C   R++   
Sbjct: 356 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM 415

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           EL   M   G + +  +Y  LI+G+C   ++  AL L  +M+S G+ P +VT NT
Sbjct: 416 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 470



 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/375 (30%), Positives = 174/375 (46%), Gaps = 52/375 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+  +    +LF  +   G+FPDL+TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L    +PD VT+ +LI     E +  EAA L+ ++   G  P+  TY ++I+G C+
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK 372

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  MA         C PD  T++T+ DG C    +D   EL  +M    +
Sbjct: 373 QDRLDAAEDMFYLMATKG------CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 426

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD---- 250
             + VTY +LI GFC   D N A  L  +M+  GV P++VT N +++ LC NGK+     
Sbjct: 427 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 486

Query: 251 ------------------------------------------EASRLLELMIQIGVRPDA 268
                                                     EA  L E M   G+ PD 
Sbjct: 487 MFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y++++DG C   R++ A ++FVSM S     +V ++  LINGYCK   ++  L L+ E
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCE 606

Query: 329 MLSKGIRPTVVTYNT 343
           M  +GI    + Y T
Sbjct: 607 MGRRGIVADAIIYIT 621



 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 170/337 (50%), Gaps = 17/337 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K   +     L+  +   G+ P+  TYN +I+ FCK  R+     +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 382

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +PD  TFT+LI G C   RI +   L  ++   G   +  TY TLI+G C 
Sbjct: 383 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
            G    AL+L ++M +       VC PD +T +T+ DGLC  G +  A E+F  M+    
Sbjct: 443 VGDLNAALDLSQQMISSG-----VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 496

Query: 194 ----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                     + PDV+TY  LI G      + EA+ L+ EM  +G+ P+ +T++ +++ L
Sbjct: 497 DLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++DEA+++   M      P+   +NTL++G+C  GRV+   ELF  M   G + D 
Sbjct: 557 CKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADA 616

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             Y  LI G+ K   I GAL ++ EM+S G+ P  +T
Sbjct: 617 IIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTIT 653



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 164/320 (51%), Gaps = 5/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K    D    +F  + + G  PD++T+  LI+ +C   R+  G  +
Sbjct: 358 PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMEL 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R     + VT+ +LI G C    +  A  L  ++ + G  PD+ T  TL++GLC 
Sbjct: 418 LHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 477

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G    AL +F+ M     +          +PD +TY+ +  GL  EG   +A+EL+ +M
Sbjct: 478 NGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEM 537

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I PD +TY+S+I G C  +  +EA  +F+ M  +   PNVVTFN ++N  CK G++
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 597

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+   L   M + G+  DA +Y TL+ GF   G +N A ++F  M S+G   D  +   +
Sbjct: 598 DDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 310 INGYCKNKEIEGALSLYSEM 329
           + G+   +E+E A+++  ++
Sbjct: 658 LTGFWSKEELERAVAMLEDL 677



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 150/301 (49%), Gaps = 17/301 (5%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P V +F  L       K  D  + L   +   GL  +  TYN LI+ FC +
Sbjct: 384 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 443

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--------- 116
           G ++    +  +++ S   PD VT  +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 503

Query: 117 --GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
             G +PDV TY  LI GL   G  + A  L+EEM +     G+V  PD ITYS++ DGLC
Sbjct: 504 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  +D+A ++F+ M  ++ +P+VVT+ +LI G+C A   ++   LF EM  +G+  + +
Sbjct: 558 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 617

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
            +  ++    K G ++ A  + + MI  GV PD      ++ GF     + RA  +   +
Sbjct: 618 IYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 677

Query: 295 E 295
           +
Sbjct: 678 Q 678



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%)

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L  GF       +A  LF +M+     P+VV F  +M  + +  + D    L + M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           +R D   +N L+  FC   ++  A   F  +   G   DV ++  L++G C    +  AL
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
             + +M     RP VVT+ T
Sbjct: 170 DFFHQMFETTCRPNVVTFTT 189


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/340 (39%), Positives = 196/340 (57%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ M+R+ P PPP   F+ L G + +  HY T +SLF +L S G+ P + T+ ILINC+ 
Sbjct: 43  FNRMVRVFP-PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYF 101

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
                +  F +L  IL+S + P+ VTF ++I G C    I +A      L A G   D F
Sbjct: 102 HQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQF 161

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGL + G    AL+L +EM   +       +P+ + YS + DGLCK+GFV  A 
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSS------VQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L  ++ +  I  D VTY SLI G C    W E   L  +M+ + V P+  TFN++++ L
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDAL 275

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G++ EA  +L +M + G +PD   YN LM+G+C    V+ A+ELF  M   G   DV
Sbjct: 276 CKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDV 335

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y +LI+GYCK K ++ A+ L+ E+ +K + PT+ +YN+
Sbjct: 336 LNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375



 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 179/329 (54%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  ++ L   L K+      L L  ++   G+  D  TYN LI+  C +GR      +
Sbjct: 193 PNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQL 252

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++R    PD  TF  LI  LC E RI+EA  +   +   G KPD+ TY  L+ G C 
Sbjct: 253 LTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCS 312

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A  LF  M     E      PD + Y+ + DG CK   VD+A  LF ++ ++N+
Sbjct: 313 RENVHEARELFNRMVKRGLE------PDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P + +Y SLI G C +   +  K L  EM      P+VVT+N++++ LCK G++ EA  
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L +M++ GV+P+   YN +MDG+CL   VN AK++F  M  +G   D+ +Y +LINGYC
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYC 486

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K + ++ A+ L+ EM  K + P + +YN+
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNS 515



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/322 (34%), Positives = 167/322 (51%), Gaps = 7/322 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +++ GC +  + +  V  L  ++    + PD YT+NILI+  CK GR+     VL  + +
Sbjct: 235 SLIDGCCSVGR-WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSK 293

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD VT+ +L++G C+   + EA  LF ++   G +PDV  Y  LI+G C+T     
Sbjct: 294 RGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDE 353

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A+ LF+E+ N N        P   +Y+++ DGLC  G +   K+L  +M      PDVVT
Sbjct: 354 AMVLFKELCNKN------LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVT 407

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  LI   C      EA  + + MM +GV+PN+VT+N +M+  C    ++ A  +   M+
Sbjct: 408 YNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMV 467

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + G+ PD   YN L++G+C T  V+ A  LF  M     + D+ SY  LI+G C    I 
Sbjct: 468 KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIP 527

Query: 321 GALSLYSEMLSKGIRPTVVTYN 342
               L  EM   G  P V+TYN
Sbjct: 528 HVQELLDEMCDSGQSPDVITYN 549



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L     K K  D  + LFK L +  L P + +YN LI+  C  GR+S    +
Sbjct: 333 PDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKL 392

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  S   PD VT+  LI  LC E RI+EA  +   +   G KP++ TY  +++G C 
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCL 452

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +  VA ++F  M     E      PD + Y+ + +G CK   VD+A  LF +M+ +N+
Sbjct: 453 RNNVNVAKDIFNRMVKSGLE------PDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNL 506

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ +Y SLI G C        + L  EM D G  P+V+T+N++++  CK    D+A  
Sbjct: 507 IPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAIS 566

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +++ G+ PD    + ++D  C   ++  A++    +  +GC  +V +Y ILIN  C
Sbjct: 567 LFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALC 625

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K+     A+ L S+M      P  +T+
Sbjct: 626 KDGSFGEAMLLLSKMEDNDRPPDAITF 652



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 161/335 (48%), Gaps = 7/335 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+      P + ++N L       ++      LF R+   GL PD+  YN+LI+ +CK  
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V    V+   +      P   ++ SLI GLC   RI     L  ++      PDV TY 
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI+ LC+ G  + AL +   M       GV  KP+ +TY+ + DG C    V+ AK++F
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKK----GV--KPNIVTYNAMMDGYCLRNNVNVAKDIF 463

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M    + PD++ Y  LI G+C     +EA  LF EM  + + P++ ++N +++ LC  
Sbjct: 464 NRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G++     LL+ M   G  PD   YN L+D FC T   ++A  LF  +   G   D ++ 
Sbjct: 524 GRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTN 582

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +++  CK ++++ A      +L  G  P V TY
Sbjct: 583 HAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTY 617



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 162/320 (50%), Gaps = 7/320 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N L   L  +     V  L   ++     PD+ TYNILI+  CK GR+     V
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGV 427

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    P+ VT+ +++ G C  + +  A  +F ++   G +PD+  Y  LING C+
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A+ LF+EM + N        PD  +Y+++ DGLC  G +   +EL  +M D   
Sbjct: 488 TEMVDEAIVLFKEMRHKN------LIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQ 541

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDV+TY  L+  FC    +++A  LF +++ +G+ P+  T + I++ LCK  K+  A  
Sbjct: 542 SPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIWPDFYTNHAIVDNLCKGEKLKMAED 600

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ ++  G  P+   Y  L++  C  G    A  L   ME N    D  ++ I+I    
Sbjct: 601 ALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLL 660

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           +  E + A  L  EM+++G+
Sbjct: 661 QRNETDKAEKLREEMIARGL 680



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 136/292 (46%), Gaps = 9/292 (3%)

Query: 9   RMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
            MH S  PP V ++NIL   L K       L +   +   G+ P++ TYN +++ +C   
Sbjct: 395 EMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRN 454

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V+    +  R+++S   PD + +  LI G C    + EA  LF ++R     PD+ +Y 
Sbjct: 455 NVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYN 514

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           +LI+GLC  G       L +EM +          PD ITY+ + D  CK    DKA  LF
Sbjct: 515 SLIDGLCNLGRIPHVQELLDEMCDSGQ------SPDVITYNILLDAFCKTQPFDKAISLF 568

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            ++  E I PD  T  +++   C       A+     ++  G  PNV T+ +++N LCK+
Sbjct: 569 RQIV-EGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKD 627

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           G   EA  LL  M      PDA  +  ++         ++A++L   M + G
Sbjct: 628 GSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%)

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C+   +D+A      M+++   P  SV++ L+      G    A  LF  ++S G    +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++ ILIN Y        A SL + +L  G +P +VT+NT
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNT 130



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 56/135 (41%)

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C   + ++A   F  M+     P    F+ ++  + + G    A  L   +   G+ P  
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
           + +  L++ +        A  L  ++  +G   ++ ++  +ING+C N  I  AL     
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 329 MLSKGIRPTVVTYNT 343
           +L++G      TY T
Sbjct: 151 LLAQGYLFDQFTYGT 165


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 200/355 (56%), Gaps = 33/355 (9%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           MLRM P PP +  F+ L   + + KHY TVLSL+K+++S G+  + YT NILIN FC + 
Sbjct: 1   MLRMRP-PPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLN 59

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R+   F VLG IL+  + P   TFT+LI+GLC E +I EA  LF K+   G +PDV TY 
Sbjct: 60  RLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYG 119

Query: 127 TLINGLCRTGHTIVALNLFEEM-ANGN-----------------GEFGVVCK-------- 160
           TLINGLC+      AL+LF +M A G                  G +    +        
Sbjct: 120 TLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHR 179

Query: 161 ---PDAITYSTITDGLCKEGFV---DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
              PD +T++T+ D LCKEG +   DKA  LF +M  + + PD VTY +LI G C+    
Sbjct: 180 KIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRL 239

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            +A  LF EM+  G  P++VT+ ++ + LCKN ++ EA  LL+++    + PD  +Y+ +
Sbjct: 240 RDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIV 299

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
           MDG C  G +  A++LF  + S G   DV +Y I+ING C+   +  A  L+ EM
Sbjct: 300 MDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEM 354



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 13/195 (6%)

Query: 15  PPVCSFNILFGCLAKN---KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P   +FN L   L K    +  D  + LF+ ++  GL PD  TYN LI+  C +GR+   
Sbjct: 183 PDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDA 242

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +   ++     PD VT+  L   LC   R+ EA  L   +      PD+  Y+ +++G
Sbjct: 243 IALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDG 302

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           +CR G    A +LF ++++          PD  TY+ + +GLC++G + +A +LF +M D
Sbjct: 303 MCRAGELEAARDLFSKLSSKG------LHPDVRTYTIMINGLCQQGLLAEASKLFGEM-D 355

Query: 192 ENINPDVVTYTSLIR 206
           EN   D+ +Y++  R
Sbjct: 356 EN---DIESYSTFSR 367



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 85/148 (57%)

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P +V ++ L+        ++    L+ +M   G+  N  T N+++N  C   ++  A  +
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           L  ++++G +P  + + TL+ G C+ G++  A +LF  M   G   DV +YG LING CK
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++++  ALSL+S+ML+KGI P   TY++
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNFTYSS 155



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P  + +S +   + +         L+ +M    I  +  T   LI  FC+ N    A  +
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
             +++  G QP+  TF  ++  LC  GK+ EA +L + M   G +PD   Y TL++G C 
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             ++  A  LF  M + G   + F+Y  LI+G C     + A+ L+  M+ + I P  +T
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 187

Query: 341 YNT 343
           +NT
Sbjct: 188 FNT 190


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 206/376 (54%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P  P +  FN L   +AK K +D V+SL +R+ ++ +  DLY+YNILINCF
Sbjct: 67  LFGEMVQSRP-LPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCF 125

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI------------------- 103
           C+  ++     VLG++++  + PD VT +SL+ G C   RI                   
Sbjct: 126 CRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDT 185

Query: 104 ----------------MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
                            EA AL  ++   GC+PD+ TY  ++NGLC+ G   +AL+L ++
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKK 245

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M  G  E       D + Y+TI DGLCK   +D A  LF KM+ + I PDV TY SLI  
Sbjct: 246 MEKGKIE------ADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISC 299

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++A  L   M+++ + PNVVTF+ +++   K GK+ EA +L + MI+  + PD
Sbjct: 300 LCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y++L++GFC+  R++ AK +F  M S  C  +V +Y  LI G+CK K +E  + L+ 
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 419

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  +G+    VTYNT
Sbjct: 420 EMSQRGLVGNTVTYNT 435



 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 183/327 (55%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N +   L K KH D   +LF ++ + G+ PD++TYN LI+C C  GR S    +L 
Sbjct: 255 VVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLS 314

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VTF++LI     E +++EA  L+ ++      PD+FTY++LING C   
Sbjct: 315 NMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A ++FE M + +      C P+ +TY+T+  G CK   V++  ELF +M    +  
Sbjct: 375 RLDEAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTY +LI+G   A D + A+ +F +M+  GV P+++T++++++ LCK GK+++A  + 
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E + +  + PD   YN +++G C  G+V    +LF S+   G   +V  Y  +I+G+C+ 
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
              E A +L+ EM   G  P    YNT
Sbjct: 549 GLKEEADALFREMKEDGTLPDSGCYNT 575



 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 179/371 (48%), Gaps = 30/371 (8%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M+ M   P  V    ++ G    NK  + V +L  ++   G  PDL TY  ++N 
Sbjct: 171 ALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAV-ALVDQMVQRGCQPDLVTYGAVVNG 229

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +     +L ++ +     D V + ++I GLC    I +A ALF K+   G +PD
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPD 289

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC---------------------- 159
           VFTY +LI+ LC  G    A  L   M        VV                       
Sbjct: 290 VFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349

Query: 160 -------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   PD  TYS++ +G C    +D+AK +F  M  ++  P+VVTY +LI+GFC A 
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              E   LF EM  +G+  N VT+N ++  L + G  D A ++ + M+  GV PD   Y+
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+DG C  G++ +A  +F  ++ +    D+++Y I+I G CK  ++E    L+  +  K
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529

Query: 333 GIRPTVVTYNT 343
           G++P V+ Y T
Sbjct: 530 GVKPNVIIYTT 540



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 143/283 (50%), Gaps = 11/283 (3%)

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTF-TSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           F ++ + SP F + G      F+  +  +   L +      ++ +A  LF ++      P
Sbjct: 23  FAQLRKASPLFSLRG----VYFSAASYDYREKLSRNALLNLKLDDAIGLFGEMVQSRPLP 78

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            +  +  L++ + +     + ++L E M N    +      D  +Y+ + +  C+   + 
Sbjct: 79  SIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISY------DLYSYNILINCFCRRSQLP 132

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  +  KM      PD+VT +SL+ G+C++   ++A  L  +M++ G +P+ VTFN ++
Sbjct: 133 LALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLI 192

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L  + K  EA  L++ M+Q G +PD   Y  +++G C  G ++ A  L   ME     
Sbjct: 193 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIE 252

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            DV  Y  +I+G CK K I+ A +L+++M +KGIRP V TYN+
Sbjct: 253 ADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNS 295



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 7/238 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K K  +  + LF+ ++  GL  +  TYN LI    + G       +
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     PD +T++ L+ GLC   ++ +A  +F  L+    +PD++TY  +I G+C+
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G      +LF  ++      GV  KP+ I Y+T+  G C++G  ++A  LF +MK++  
Sbjct: 513 AGKVEDGWDLFCSLSLK----GV--KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            PD   Y +LIR      D   +  L  EM   G   +  T ++++N L  +G+++++
Sbjct: 567 LPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML-HDGRLEKS 623



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 69/135 (51%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +++IL   L K    +  L +F+ L    + PD+YTYNI+I   CK G+V  G+ 
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      P+ + +T++I G C +    EA ALF +++  G  PD   Y TLI    
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARL 581

Query: 134 RTGHTIVALNLFEEM 148
           R G    +  L +EM
Sbjct: 582 RDGDKAASAELIKEM 596


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/340 (39%), Positives = 196/340 (57%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ M+R+ P PPP   F+ L G + +  HY T +SLF +L S G+ P + T+ ILINC+ 
Sbjct: 43  FNRMVRVFP-PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYF 101

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
                +  F +L  IL+S + P+ VTF ++I G C    I +A      L A G   D F
Sbjct: 102 HQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQF 161

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGL + G    AL+L +EM   +       +P+ + YS + DGLCK+GFV  A 
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSS------VQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L  ++ +  I  D VTY SLI G C    W E   L  +M+ + V P+  TFN++++ L
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDAL 275

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G++ EA  +L +M + G +PD   YN LM+G+C    V+ A+ELF  M   G   DV
Sbjct: 276 CKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDV 335

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y +LI+GYCK K ++ A+ L+ E+ +K + PT+ +YN+
Sbjct: 336 LNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375



 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 179/329 (54%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  ++ L   L K+      L L  ++   G+  D  TYN LI+  C +GR      +
Sbjct: 193 PNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQL 252

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++R    PD  TF  LI  LC E RI+EA  +   +   G KPD+ TY  L+ G C 
Sbjct: 253 LTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCS 312

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A  LF  M     E      PD + Y+ + DG CK   VD+A  LF ++ ++N+
Sbjct: 313 RENVHEARELFNRMVKRGLE------PDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P + +Y SLI G C +   +  K L  EM      P+VVT+N++++ LCK G++ EA  
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L +M++ GV+P+   YN +MDG+CL   VN AK++F  M  +G   D+ +Y +LINGYC
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYC 486

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K + ++ A+ L+ EM  K + P + +YN+
Sbjct: 487 KTEMVDEAIVLFKEMRHKNLIPDIASYNS 515



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/322 (34%), Positives = 167/322 (51%), Gaps = 7/322 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +++ GC +  + +  V  L  ++    + PD YT+NILI+  CK GR+     VL  + +
Sbjct: 235 SLIDGCCSVGR-WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSK 293

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD VT+ +L++G C+   + EA  LF ++   G +PDV  Y  LI+G C+T     
Sbjct: 294 RGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDE 353

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A+ LF+E+ N N        P   +Y+++ DGLC  G +   K+L  +M      PDVVT
Sbjct: 354 AMVLFKELCNKN------LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVT 407

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  LI   C      EA  + + MM +GV+PN+VT+N +M+  C    ++ A  +   M+
Sbjct: 408 YNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMV 467

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + G+ PD   YN L++G+C T  V+ A  LF  M     + D+ SY  LI+G C    I 
Sbjct: 468 KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIP 527

Query: 321 GALSLYSEMLSKGIRPTVVTYN 342
               L  EM   G  P V+TYN
Sbjct: 528 HVQELLDEMCDSGQSPDVITYN 549



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L     K K  D  + LFK L +  L P + +YN LI+  C  GR+S    +
Sbjct: 333 PDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKL 392

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  S   PD VT+  LI  LC E RI+EA  +   +   G KP++ TY  +++G C 
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCL 452

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +  VA ++F  M     E      PD + Y+ + +G CK   VD+A  LF +M+ +N+
Sbjct: 453 RNNVNVAKDIFNRMVKSGLE------PDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNL 506

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ +Y SLI G C        + L  EM D G  P+V+T+N++++  CK    D+A  
Sbjct: 507 IPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAIS 566

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +++ G+ PD    + ++D  C   ++  A++    +  +GC  +V +Y ILIN  C
Sbjct: 567 LFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALC 625

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K+     A+ L S+M      P  +T+
Sbjct: 626 KDGSFGEAMLLLSKMEDNDRPPDAITF 652



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 161/335 (48%), Gaps = 7/335 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+      P + ++N L       ++      LF R+   GL PD+  YN+LI+ +CK  
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V    V+   +      P   ++ SLI GLC   RI     L  ++      PDV TY 
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI+ LC+ G  + AL +   M       GV  KP+ +TY+ + DG C    V+ AK++F
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKK----GV--KPNIVTYNAMMDGYCLRNNVNVAKDIF 463

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M    + PD++ Y  LI G+C     +EA  LF EM  + + P++ ++N +++ LC  
Sbjct: 464 NRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G++     LL+ M   G  PD   YN L+D FC T   ++A  LF  +   G   D ++ 
Sbjct: 524 GRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTN 582

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +++  CK ++++ A      +L  G  P V TY
Sbjct: 583 HAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTY 617



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 162/320 (50%), Gaps = 7/320 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N L   L  +     V  L   ++     PD+ TYNILI+  CK GR+     V
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGV 427

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    P+ VT+ +++ G C  + +  A  +F ++   G +PD+  Y  LING C+
Sbjct: 428 LVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A+ LF+EM + N        PD  +Y+++ DGLC  G +   +EL  +M D   
Sbjct: 488 TEMVDEAIVLFKEMRHKN------LIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQ 541

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDV+TY  L+  FC    +++A  LF +++ +G+ P+  T + I++ LCK  K+  A  
Sbjct: 542 SPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIWPDFYTNHAIVDNLCKGEKLKMAED 600

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ ++  G  P+   Y  L++  C  G    A  L   ME N    D  ++ I+I    
Sbjct: 601 ALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLL 660

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           +  E + A  L  EM+++G+
Sbjct: 661 QRNETDKAEKLREEMIARGL 680



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 136/292 (46%), Gaps = 9/292 (3%)

Query: 9   RMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
            MH S  PP V ++NIL   L K       L +   +   G+ P++ TYN +++ +C   
Sbjct: 395 EMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRN 454

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V+    +  R+++S   PD + +  LI G C    + EA  LF ++R     PD+ +Y 
Sbjct: 455 NVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYN 514

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           +LI+GLC  G       L +EM +          PD ITY+ + D  CK    DKA  LF
Sbjct: 515 SLIDGLCNLGRIPHVQELLDEMCDSGQS------PDVITYNILLDAFCKTQPFDKAISLF 568

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            ++  E I PD  T  +++   C       A+     ++  G  PNV T+ +++N LCK+
Sbjct: 569 RQIV-EGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKD 627

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           G   EA  LL  M      PDA  +  ++         ++A++L   M + G
Sbjct: 628 GSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%)

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C+   +D+A      M+++   P  SV++ L+      G    A  LF  ++S G    +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++ ILIN Y        A SL + +L  G +P +VT+NT
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNT 130



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 56/135 (41%)

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C   + ++A   F  M+     P    F+ ++  + + G    A  L   +   G+ P  
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
           + +  L++ +        A  L  ++  +G   ++ ++  +ING+C N  I  AL     
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 329 MLSKGIRPTVVTYNT 343
           +L++G      TY T
Sbjct: 151 LLAQGYLFDQFTYGT 165


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 204/343 (59%), Gaps = 8/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+R  P P  V SF+ L   L   KHY +V+SLF+ ++ + +    +  +I++N
Sbjct: 57  FSLFRQMVRTKPLPS-VVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSIVVN 115

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCK 119
             C M R   GF VL    +     + V F +L++GL AE+++ +A  LF KL R   C+
Sbjct: 116 SCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVRENICE 175

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+   Y T++NGLC+ GHT  A +L   M  G+       KP+   YS + D  CK+G +
Sbjct: 176 PNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGS------TKPNTCIYSIVIDAFCKDGML 229

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           D A  L  +MK ++I PD+ TY++LI   C  + W   + LF+EM+   + PNV TFN +
Sbjct: 230 DGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSV 289

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LCK GK+++A  ++  MI+ GV PD   YN ++DG+ L G+V+RA+E+F SM +   
Sbjct: 290 IDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSI 349

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             ++ SY ILINGY + K+I+ A+ +  E+  KG++P++VT N
Sbjct: 350 EPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCN 392



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 168/312 (53%), Gaps = 9/312 (2%)

Query: 20  FNILF-GCLAKNKHYDTVLSLFKRLNSIGL-FPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           FN L  G  A+NK  D V  LFK+L    +  P+   Y  ++N  CK G     F +L  
Sbjct: 145 FNTLLRGLFAENKVKDAV-HLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRL 203

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           + +    P+   ++ +I   C +  +  A +L  +++     PD+FTY+TLI+ LC+   
Sbjct: 204 MEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQ 263

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
                 LF EM + N        P+  T++++ DGLCKEG V+ A+E+   M ++ ++PD
Sbjct: 264 WENVRTLFLEMIHLN------IYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPD 317

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V+TY  +I G+      + A+ +F  M+++ ++PN++++N+++N   +  K+DEA ++  
Sbjct: 318 VITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCR 377

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            + Q G++P     N L+ G    GR   A+  F  M S G + D++++  L+ GY KN 
Sbjct: 378 EISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNG 437

Query: 318 EIEGALSLYSEM 329
            +E A+S + ++
Sbjct: 438 LVEEAMSHFHKL 449



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 170/339 (50%), Gaps = 6/339 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  ++R +   P    +  +   L K  H      L + +      P+   Y+I+I+ F
Sbjct: 164 LFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAF 223

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     +L  + +    PD  T+++LI  LC  S+      LF ++      P+V
Sbjct: 224 CKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNV 283

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+ ++I+GLC+ G    A    EE+     E GV   PD ITY+ I DG    G VD+A
Sbjct: 284 CTFNSVIDGLCKEGKVEDA----EEIMRYMIEKGV--DPDVITYNMIIDGYGLRGQVDRA 337

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +E+F  M +++I P++++Y  LI G+      +EA  +  E+  +G++P++VT NV+++ 
Sbjct: 338 REIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHG 397

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L + G+   A    + M+  G  PD   + TL+ G+   G V  A   F  +E      +
Sbjct: 398 LFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTN 457

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  Y  +I+G CKN +++ A + + ++   G+ P V+TY
Sbjct: 458 IQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITY 496



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 163/362 (45%), Gaps = 41/362 (11%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++    + P  C ++I+     K+   D   SL   +    + PD++TY+ LI+  CK+ 
Sbjct: 203 LMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLS 262

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +      +   ++     P+  TF S+I GLC E ++ +A  +   +   G  PDV TY 
Sbjct: 263 QWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYN 322

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            +I+G    G    A  +F+ M N + E      P+ I+Y+ + +G  ++  +D+A ++ 
Sbjct: 323 MIIDGYGLRGQVDRAREIFDSMINKSIE------PNIISYNILINGYARQKKIDEAMQVC 376

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP--------------- 231
            ++  + + P +VT   L+ G         A+  F EM+  G  P               
Sbjct: 377 REISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKN 436

Query: 232 --------------------NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                               N+  +  +++ LCKNGK+D+A    E +  IG+ PD   Y
Sbjct: 437 GLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITY 496

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             ++ G+C  G ++ AK++   ME NGC+ D  +Y +++ G+ ++ ++    +   E+  
Sbjct: 497 TAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAG 556

Query: 332 KG 333
           K 
Sbjct: 557 KS 558



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 29/291 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P VC+FN +   L K    +    + + +   G+ PD+ TYN++I+ +   G+V     +
Sbjct: 281 PNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREI 340

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+ +++  LI G   + +I EA  +  ++   G KP + T   L++GL  
Sbjct: 341 FDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE 400

Query: 135 TGHTIVALNLFEEMANGN-------------GEFGVVCKPDAIT---------------- 165
            G T  A N F+EM +               G F      +A++                
Sbjct: 401 LGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQI 460

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ + DGLCK G +DKA   F K+    ++PDV+TYT++I G+C     +EAK +  +M 
Sbjct: 461 YTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKME 520

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           D G   +  T+NVI+    ++ K+ E    LE +       +A+    LMD
Sbjct: 521 DNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 7/244 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M+      P + S+NIL    A+ K  D  + + + ++  GL P + T N+L++  
Sbjct: 340 IFDSMIN-KSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGL 398

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            ++GR          +L +   PD  T  +L+ G      + EA + F KL       ++
Sbjct: 399 FELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNI 458

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YT +I+GLC+ G    A   FE++        +   PD ITY+ +  G C+EG +D+A
Sbjct: 459 QIYTAVIDGLCKNGKLDKAHATFEKLP------LIGLHPDVITYTAMISGYCQEGLLDEA 512

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K++  KM+D     D  TY  ++RGF  +N  +E K    E+  +       T  ++M+ 
Sbjct: 513 KDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDI 572

Query: 243 LCKN 246
           + ++
Sbjct: 573 IAED 576



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 125/269 (46%), Gaps = 32/269 (11%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE----------------- 147
           +A +LF ++      P V +++ L+  L    H    ++LF E                 
Sbjct: 55  DAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSIVV 114

Query: 148 -----MANGNGEFGVVCKP-------DAITYSTITDGLCKEGFVDKAKELFLKMKDENI- 194
                M   +  F V+          + + ++T+  GL  E  V  A  LF K+  ENI 
Sbjct: 115 NSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVRENIC 174

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKNGKMDEAS 253
            P+ V Y +++ G C      +A  L + +M+QG  +PN   ++++++  CK+G +D A+
Sbjct: 175 EPNEVMYGTVMNGLCKKGHTQKAFDL-LRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGAT 233

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL  M Q  + PD   Y+TL+D  C   +    + LF+ M       +V ++  +I+G 
Sbjct: 234 SLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGL 293

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK  ++E A  +   M+ KG+ P V+TYN
Sbjct: 294 CKEGKVEDAEEIMRYMIEKGVDPDVITYN 322



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 36/201 (17%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM-------------- 224
           +D A  LF +M      P VV+++ L++   +   ++    LF E+              
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 225 ---------------------MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
                                  +G+  N V FN ++  L    K+ +A  L + +++  
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVREN 172

Query: 264 V-RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           +  P+  +Y T+M+G C  G   +A +L   ME      +   Y I+I+ +CK+  ++GA
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGA 232

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
            SL +EM  K I P + TY+T
Sbjct: 233 TSLLNEMKQKSIPPDIFTYST 253


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 208/376 (55%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P P  +  F+ L   +AK K +D V+S  +++  +G+  +LYTYNI+INC 
Sbjct: 52  LFGEMVKSRPFPS-IVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCL 110

Query: 63  CKMGRVSPGFVVLGRILR-----------------------------------SCFTPDA 87
           C+  ++S    +LG++++                                     + PD 
Sbjct: 111 CRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 170

Query: 88  VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           VTFT+L+ GL   ++  EA AL  ++   GC+PD+ TY  +INGLC+ G   +ALNL  +
Sbjct: 171 VTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 230

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M  G  E       D + YST+ D LCK   VD A  LF +M ++ I PDV TY+SLI  
Sbjct: 231 MEKGKIE------ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++A  L  +M+++ + PNVVTFN +++   K GK+ EA +L + MIQ  + P+
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YN+L++GFC+  R++ A+++F  M S  C+ DV +Y  LING+CK K++   + L+ 
Sbjct: 345 IVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFR 404

Query: 328 EMLSKGIRPTVVTYNT 343
           +M  +G+    VTY T
Sbjct: 405 DMSRRGLVGNTVTYTT 420



 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 180/327 (55%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  ++ +   L K +H D  L+LF  +++ G+ PD++TY+ LI+C C  GR S    +L 
Sbjct: 240 VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLS 299

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L     P+ VTF SLI     E +++EA  LF ++      P++ TY +LING C   
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +F  M + +      C PD +TY+T+ +G CK   V    ELF  M    +  
Sbjct: 360 RLDEAQQIFTLMVSKD------CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVG 413

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTYT+LI GF  A+D + A+ +F +M+  GV PN++T+N +++ LCKNGK+++A  + 
Sbjct: 414 NTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 473

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E + +  + PD   YN + +G C  G+V    +LF S+   G   DV +Y  +I+G+CK 
Sbjct: 474 EYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKK 533

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
              E A +L+ +M   G  P   TYNT
Sbjct: 534 GLKEEAYTLFIKMKEDGPLPDSGTYNT 560



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 63/129 (48%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           +EA  LF EM+     P++V F+ +++ + K  K D      E M  +GV  +   YN +
Sbjct: 47  DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIM 106

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++  C   +++ A  +   M   G    + +   L+NG+C    I  A++L  +M+  G 
Sbjct: 107 INCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 166

Query: 335 RPTVVTYNT 343
           +P  VT+ T
Sbjct: 167 QPDTVTFTT 175



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG----KMDEASRLLEL 258
           SL + F +    + + CL      +G+  + ++++    +L +N     K+DEA  L   
Sbjct: 2   SLAKRFVHLRKASPSFCL------RGIYFSGLSYDGYREKLSRNALLHLKLDEAVDLFGE 55

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M++    P    ++ L+       + +        ME  G   ++++Y I+IN  C+  +
Sbjct: 56  MVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQ 115

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           +  AL++  +M+  G  P++VT N+
Sbjct: 116 LSFALAILGKMMKLGYGPSIVTLNS 140


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 207/368 (56%), Gaps = 38/368 (10%)

Query: 10  MHPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           +H  P P V  F+ LF  +AK K YD VL+L K++   G+  +LYT +I+INCFC+  ++
Sbjct: 80  IHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKL 139

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
              F  +G+I++  + P+ +TF++LI GLC E R+ EA  L  ++   G KPD+ T  TL
Sbjct: 140 CLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTL 199

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFG-------------VVCKP-------------- 161
           +NGLC +G    A+ L ++M     E+G             V+CK               
Sbjct: 200 VNGLCLSGKEAEAMLLIDKMV----EYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKME 255

Query: 162 ------DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
                 DA+ YS I DGLCK G +D A  LF +M+ + I  +++TY  LI GFC A  W+
Sbjct: 256 ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWD 315

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           +   L  +M+ + + PNVVTF+V+++   K GK+ EA  L + MI  G+ PD   Y +L+
Sbjct: 316 DGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLI 375

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           DGFC    +++A ++   M S GC  ++ ++ ILINGYCK   I+  L L+ +M  +G+ 
Sbjct: 376 DGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVV 435

Query: 336 PTVVTYNT 343
              VTYNT
Sbjct: 436 ADTVTYNT 443



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 168/324 (51%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
            ++I+   L K+   D   +LF  +   G+  ++ TYNILI  FC  GR   G  +L  +
Sbjct: 265 KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDM 324

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           ++    P+ VTF+ LI     E ++ EA  L  ++   G  PD  TYT+LI+G C+  H 
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  + + M +        C P+  T++ + +G CK   +D   ELF KM    +  D 
Sbjct: 385 DKANQMVDLMVSKG------CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 438

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY +LI+GFC     N AK LF EM+ + V PN+VT+ ++++ LC NG+ ++A  + E 
Sbjct: 439 VTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEK 498

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           + +  +  D  +YN ++ G C   +V+ A +LF S+   G    V +Y I+I G CK   
Sbjct: 499 IEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGP 558

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           +  A  L+ +M   G  P   TYN
Sbjct: 559 LSEAELLFRKMEEDGHAPDGWTYN 582



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  +   + K+      + L +++    +  D   Y+I+I+  CK G +   F +
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 285

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     T + +T+  LI G C   R  + A L   +      P+V T++ LI+   +
Sbjct: 286 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L +EM +     G+   PD ITY+++ DG CKE  +DKA ++   M  +  
Sbjct: 346 EGKLREAEELHKEMIHR----GIA--PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC 399

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P++ T+  LI G+C AN  ++   LF +M  +GV  + VT+N ++   C+ GK++ A  
Sbjct: 400 DPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKE 459

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+   V P+   Y  L+DG C  G   +A E+F  +E +    D+  Y I+I+G C
Sbjct: 460 LFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMC 519

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              +++ A  L+  +  KG++P V TYN
Sbjct: 520 NASKVDDAWDLFCSLPLKGVKPGVKTYN 547



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 171/329 (51%), Gaps = 7/329 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F+ M  M      + ++NIL G       +D    L + +    + P++ T+++LI+
Sbjct: 283 FNLFNEM-EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 341

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            F K G++     +   ++     PD +T+TSLI G C E+ + +A  +   + + GC P
Sbjct: 342 SFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ T+  LING C+       L LF +M+      GVV   D +TY+T+  G C+ G ++
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMS----LRGVV--ADTVTYNTLIQGFCELGKLN 455

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            AKELF +M    + P++VTY  L+ G C   +  +A  +F ++    ++ ++  +N+I+
Sbjct: 456 VAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIII 515

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + +C   K+D+A  L   +   GV+P    YN ++ G C  G ++ A+ LF  ME +G  
Sbjct: 516 HGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 575

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEM 329
            D ++Y ILI  +  + +   ++ L  E+
Sbjct: 576 PDGWTYNILIRAHLGDGDATKSVKLIEEL 604



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 141/297 (47%), Gaps = 6/297 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F++L     K         L K +   G+ PD  TY  LI+ FCK   +     +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++     P+  TF  LI G C  +RI +   LF K+   G   D  TY TLI G C 
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA  LF+EM +          P+ +TY  + DGLC  G  +KA E+F K++   +
Sbjct: 451 LGKLNVAKELFQEMVSRK------VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM 504

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D+  Y  +I G C A+  ++A  LF  +  +GV+P V T+N+++  LCK G + EA  
Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAEL 564

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           L   M + G  PD   YN L+      G   ++ +L   ++  G   D  +  ++I+
Sbjct: 565 LFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 122/267 (45%), Gaps = 30/267 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K  H D    +   + S G  P++ T+NILIN +CK  R+  G  +
Sbjct: 366 PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL 425

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++       D VT+ +LI+G C   ++  A  LF ++ +    P++ TY  L++GLC 
Sbjct: 426 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 485

Query: 135 TGHTIVALNLFEEMANGNGEFGV---------VC--------------------KPDAIT 165
            G +  AL +FE++     E  +         +C                    KP   T
Sbjct: 486 NGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKT 545

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  GLCK+G + +A+ LF KM+++   PD  TY  LIR      D  ++  L  E+ 
Sbjct: 546 YNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELK 605

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEA 252
             G   +  T  ++++ L  +G++ ++
Sbjct: 606 RCGFSVDASTIKMVIDML-SDGRLKKS 631



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
            D A +LF  M      P V+ ++ L         ++    L  +M  +G+  N+ T ++
Sbjct: 69  ADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSI 128

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C+  K+  A   +  +I++G  P+   ++TL++G CL GRV+ A EL   M   G
Sbjct: 129 MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG 188

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              D+ +   L+NG C + +   A+ L  +M+  G +P  VTY
Sbjct: 189 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 2/167 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + ++ IL   L  N   +  L +F+++    +  D+  YNI+I+  C   +V   + 
Sbjct: 470 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 529

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      P   T+  +I GLC +  + EA  LF K+   G  PD +TY  LI    
Sbjct: 530 LFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHL 589

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
             G    ++ L EE+      F V      +    ++DG  K+ F+D
Sbjct: 590 GDGDATKSVKLIEELKRCG--FSVDASTIKMVIDMLSDGRLKKSFLD 634


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 136/341 (39%), Positives = 197/341 (57%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ ML M P PPP   FN +   L K + + T +SL K L+  G+  DL T NILINCF
Sbjct: 56  LFNRMLLMRP-PPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCF 114

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +G+++  F VL  IL+  + PD +T T+LIKGLC    + +A      + A   + D 
Sbjct: 115 CHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDR 174

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y TLINGLC+ G T  A+ L   +   +       KPD + Y+ I D LCK   V +A
Sbjct: 175 ISYGTLINGLCKIGETKAAIQLMRNLEERS------IKPDVVMYNIIIDSLCKNKLVGEA 228

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L+ +M  + I P+VVTYT+LI GFC      EA  L  EM  + + P+V TF+++++ 
Sbjct: 229 CNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDA 288

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L K GKM  A  +L +M++  V+PD   YN+L+DG+ L   V  AK +F SM  +G    
Sbjct: 289 LGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPG 348

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V SY I+I+G CK K ++ A+SL+ EM  K + P  +T+N+
Sbjct: 349 VQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNS 389



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 170/312 (54%), Gaps = 12/312 (3%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82
           + GCL +       ++L   +    + PD+YT++ILI+   K G++    +VL  ++++ 
Sbjct: 256 IMGCLIE------AVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAY 309

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
             PD VT+ SL+ G    + +  A  +F  +   G  P V +YT +I+GLC+T     A+
Sbjct: 310 VKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAI 369

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
           +LFEEM + N        P+ IT++++ DGLCK G +    +L  KM+D +   DV+TY+
Sbjct: 370 SLFEEMKHKN------VIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYS 423

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           SLI   C     ++A  LF +M+ Q +QP++ T+ ++++ LCK G++  A  + + ++  
Sbjct: 424 SLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIK 483

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G   D   Y  ++ GFC  G  + A  L   ME NGC+ +  ++ I+I    +  E + A
Sbjct: 484 GYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKA 543

Query: 323 LSLYSEMLSKGI 334
             L  EM+++G+
Sbjct: 544 EKLLREMIARGL 555



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 170/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +NI+   L KNK      +L+  +N+  ++P++ TY  LI  FC MG +     +
Sbjct: 207 PDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVAL 266

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD  TF+ LI  L  E ++  A  +   +     KPDV TY +L++G   
Sbjct: 267 LNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFL 326

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F  MA      GV   P   +Y+ + DGLCK   VD+A  LF +MK +N+
Sbjct: 327 VNEVKHAKYVFNSMAQS----GVT--PGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNV 380

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +T+ SLI G C +        L  +M D+    +V+T++ +++ LCKN  +D+A  
Sbjct: 381 IPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIA 440

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + MI   ++PD   Y  L+DG C  GR+  A+E+F  +   G   D+ +Y ++I+G+C
Sbjct: 441 LFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFC 500

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    + AL+L S+M   G  P  +T++
Sbjct: 501 KAGLFDEALALLSKMEDNGCIPNAITFD 528



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 161/311 (51%), Gaps = 13/311 (4%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
           K +D V++L  +L+ I       +Y  LIN  CK+G       ++  +      PD V +
Sbjct: 160 KFHDDVVALEFQLDRI-------SYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMY 212

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
             +I  LC    + EA  L++++ A    P+V TYTTLI G C  G  I A+ L  EM  
Sbjct: 213 NIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKL 272

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
            N        PD  T+S + D L KEG +  AK +   M    + PDVVTY SL+ G+  
Sbjct: 273 KN------INPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFL 326

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
            N+   AK +F  M   GV P V ++ ++++ LCK   +DEA  L E M    V P+   
Sbjct: 327 VNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTIT 386

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           +N+L+DG C +GR+    +L   M     + DV +Y  LI+  CKN  ++ A++L+ +M+
Sbjct: 387 FNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMI 446

Query: 331 SKGIRPTVVTY 341
           ++ I+P + TY
Sbjct: 447 TQEIQPDMYTY 457



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 35/166 (21%)

Query: 212 NDWNEAKCLFIEMMD-----------------------------------QGVQPNVVTF 236
           ND N+A  LF  M+                                    +G+  ++VT 
Sbjct: 48  NDHNDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTL 107

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N+++N  C  G++  +  +L  +++ G  PD     TL+ G CL G V +A +    + +
Sbjct: 108 NILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVA 167

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                D  SYG LING CK  E + A+ L   +  + I+P VV YN
Sbjct: 168 LEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYN 213


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 133/334 (39%), Positives = 192/334 (57%), Gaps = 6/334 (1%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           M+P PP    F  LFG + K KHY T +SL K   S+G+ PD++T  I+INC C +    
Sbjct: 1   MNPLPPDK-DFATLFGVIVKMKHYATAISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTV 59

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
            GF VLG + +    P  VTF +LI GLCAE  +  AA     L   G + + +T+ T+I
Sbjct: 60  FGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLEDMGYESNSYTHGTII 119

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           NGLC+ G T  A++  E++   N  F ++     I YSTI D LCK+G +  A   F  M
Sbjct: 120 NGLCKVGDTAGAISYLEKIEGRNRGFDLL-----IAYSTIMDSLCKDGMLCLALNFFSGM 174

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
             + I PD+V Y SLI G C    WNEA  L   MM +G+ PNV TFNV+++  CK GK+
Sbjct: 175 TCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKI 234

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
             A  ++  M+ +GV PD   YN+++ G CL  ++N A ++F  M   G + +V +Y  L
Sbjct: 235 SRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSL 294

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+G+CK + I  A+ +  EM++ G+   VVT++T
Sbjct: 295 IHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWST 328



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 172/326 (52%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L     ++   +L   +   G+ P++ T+N+L++ FCK G++S    +
Sbjct: 181 PDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTI 240

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++     PD VT+ S+I G C  S++ +A  +F  +   G  P+V TY++LI+G C+
Sbjct: 241 MCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCK 300

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T +   A+ + +EM N NG        D +T+ST+  G CK G  + A ELF  M + + 
Sbjct: 301 TRNINKAIFVLDEMVN-NG-----LNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQ 354

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ T   ++ G       +EA  LF +M    ++ N+VT+N++++ +C  GK ++A  
Sbjct: 355 LPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDARE 414

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++ D   Y T++ G C  G ++ A++L + ME NGC  + F+Y +L+ G  
Sbjct: 415 LFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGLL 474

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           +  +I  +      M  KG+     T
Sbjct: 475 QRYDISRSTKYLMLMKGKGLSADATT 500



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 162/324 (50%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++ +   L K+      L+ F  +   G+ PDL  YN LI+  C  GR +    +LG +
Sbjct: 150 AYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNM 209

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +R    P+  TF  L+   C E +I  A  +   +   G +PDV TY ++I+G C     
Sbjct: 210 MRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQM 269

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+ +FE M +     G++  P+ +TYS++  G CK   ++KA  +  +M +  +N DV
Sbjct: 270 NDAVKVFELMIHK----GLL--PNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDV 323

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VT+++LI GFC A     A  LF  M +    PN+ T  +I++ L K     EA  L   
Sbjct: 324 VTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRK 383

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M ++ +  +   YN ++DG C  G+ N A+ELF  + S G   DV +Y  +I G CK   
Sbjct: 384 MEKMNLELNIVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGL 443

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           ++ A  L  +M   G  P   TYN
Sbjct: 444 LDDAEDLLMKMEENGCPPNEFTYN 467



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 65/127 (51%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +  H   P + +  I+   L K + +   +SLF+++  + L  ++ TYNI+++  C  G+
Sbjct: 349 MHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGK 408

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
            +    +   +       D V +T++IKGLC E  + +A  L  K+   GC P+ FTY  
Sbjct: 409 FNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNV 468

Query: 128 LINGLCR 134
           L+ GL +
Sbjct: 469 LVRGLLQ 475


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 137/368 (37%), Positives = 207/368 (56%), Gaps = 38/368 (10%)

Query: 10  MHPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           +H  P P V  F+ LF  +AK K YD VL+L K++   G+  +LYT +I+INCFC+  ++
Sbjct: 178 IHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKL 237

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
              F  +G+I++  + P+ +TF++LI GLC E R+ EA  L  ++   G KPD+ T  TL
Sbjct: 238 CLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTL 297

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFG-------------VVCKP-------------- 161
           +NGLC +G    A+ L ++M     E+G             V+CK               
Sbjct: 298 VNGLCLSGKEAEAMLLIDKMV----EYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKME 353

Query: 162 ------DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
                 DA+ YS I DGLCK G +D A  LF +M+ + I  +++TY  LI GFC A  W+
Sbjct: 354 ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWD 413

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           +   L  +M+ + + PNVVTF+V+++   K GK+ EA  L + MI  G+ PD   Y +L+
Sbjct: 414 DGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLI 473

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           DGFC    +++A ++   M S GC  ++ ++ ILINGYCK   I+  L L+ +M  +G+ 
Sbjct: 474 DGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVV 533

Query: 336 PTVVTYNT 343
              VTYNT
Sbjct: 534 ADTVTYNT 541



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 168/323 (52%), Gaps = 6/323 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           ++I+   L K+   D   +LF  +   G+  ++ TYNILI  FC  GR   G  +L  ++
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 423

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           +    P+ VTF+ LI     E ++ EA  L  ++   G  PD  TYT+LI+G C+  H  
Sbjct: 424 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 483

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  + + M +        C P+  T++ + +G CK   +D   ELF KM    +  D V
Sbjct: 484 KANQMVDLMVSKG------CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTV 537

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY +LI+GFC     N AK LF EM+ + V PN+VT+ ++++ LC NG+ ++A  + E +
Sbjct: 538 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 597

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            +  +  D  +YN ++ G C   +V+ A +LF S+   G    V +Y I+I G CK   +
Sbjct: 598 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPL 657

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
             A  L+ +M   G  P   TYN
Sbjct: 658 SEAELLFRKMEEDGHAPDGWTYN 680



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  +   + K+      + L +++    +  D   Y+I+I+  CK G +   F +
Sbjct: 324 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 383

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     T + +T+  LI G C   R  + A L   +      P+V T++ LI+   +
Sbjct: 384 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 443

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L +EM +     G+   PD ITY+++ DG CKE  +DKA ++   M  +  
Sbjct: 444 EGKLREAEELHKEMIHR----GIA--PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC 497

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P++ T+  LI G+C AN  ++   LF +M  +GV  + VT+N ++   C+ GK++ A  
Sbjct: 498 DPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKE 557

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+   V P+   Y  L+DG C  G   +A E+F  +E +    D+  Y I+I+G C
Sbjct: 558 LFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMC 617

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              +++ A  L+  +  KG++P V TYN
Sbjct: 618 NASKVDDAWDLFCSLPLKGVKPGVKTYN 645



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 171/329 (51%), Gaps = 7/329 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F+ M  M      + ++NIL G       +D    L + +    + P++ T+++LI+
Sbjct: 381 FNLFNEM-EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 439

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            F K G++     +   ++     PD +T+TSLI G C E+ + +A  +   + + GC P
Sbjct: 440 SFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 499

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ T+  LING C+       L LF +M+      GVV   D +TY+T+  G C+ G ++
Sbjct: 500 NIRTFNILINGYCKANRIDDGLELFRKMS----LRGVVA--DTVTYNTLIQGFCELGKLN 553

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            AKELF +M    + P++VTY  L+ G C   +  +A  +F ++    ++ ++  +N+I+
Sbjct: 554 VAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIII 613

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + +C   K+D+A  L   +   GV+P    YN ++ G C  G ++ A+ LF  ME +G  
Sbjct: 614 HGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 673

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEM 329
            D ++Y ILI  +  + +   ++ L  E+
Sbjct: 674 PDGWTYNILIRAHLGDGDATKSVKLIEEL 702



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 143/303 (47%), Gaps = 6/303 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F++L     K         L K +   G+ PD  TY  LI+ FCK   +     +
Sbjct: 429 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 488

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++     P+  TF  LI G C  +RI +   LF K+   G   D  TY TLI G C 
Sbjct: 489 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 548

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA  LF+EM +          P+ +TY  + DGLC  G  +KA E+F K++   +
Sbjct: 549 LGKLNVAKELFQEMVSRK------VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM 602

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D+  Y  +I G C A+  ++A  LF  +  +GV+P V T+N+++  LCK G + EA  
Sbjct: 603 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAEL 662

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M + G  PD   YN L+      G   ++ +L   ++  G   D  +  ++I+   
Sbjct: 663 LFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLS 722

Query: 315 KNK 317
            +K
Sbjct: 723 DDK 725



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
            D A +LF  M      P V+ ++ L         ++    L  +M  +G+  N+ T ++
Sbjct: 167 ADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSI 226

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C+  K+  A   +  +I++G  P+   ++TL++G CL GRV+ A EL   M   G
Sbjct: 227 MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG 286

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              D+ +   L+NG C + +   A+ L  +M+  G +P  VTY
Sbjct: 287 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 329


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 199/340 (58%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F++M  +HP+P     FN +   L   K Y T +SL+K++    + PD +T NI+INCFC
Sbjct: 46  FNHMFHVHPTPHTF-HFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFC 104

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G+V   F  + +IL+  + P+ +T  +L+KGLC E ++ EA     K+ A G +    
Sbjct: 105 HFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGI 164

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y  LING+C+ G T  A+ L   +   +       +P+ + YS I D LCK+  VD+A 
Sbjct: 165 SYGILINGVCKIGETRAAIRLLRRIERWS------IRPNVVIYSMIIDRLCKDTLVDEAY 218

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M  + I+PDVVTY+ L+ GFC     N A  L  EM+ + + P++ T+ ++++ L
Sbjct: 219 DLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDAL 278

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  +L +M++  V  D  VY+TLMDG+CL   VN AK +F +M   G   DV
Sbjct: 279 CKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDV 338

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             Y I+ING CK K ++ AL+L+ E+  K + P  VTY +
Sbjct: 339 HCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTS 378



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 172/311 (55%), Gaps = 13/311 (4%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
           + +D VL+   RL+ I       +Y ILIN  CK+G       +L RI R    P+ V +
Sbjct: 149 RFHDKVLAQGFRLSGI-------SYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIY 201

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
           + +I  LC ++ + EA  L+T++   G  PDV TY+ L++G C  G    A++L  EM  
Sbjct: 202 SMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVL 261

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
            N        PD  TY+ + D LCKEG V +A+ +   M    +N DVV Y++L+ G+C 
Sbjct: 262 EN------INPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCL 315

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
            N+ N AK +F  M   GV P+V  +++++N LCK  ++DEA  L E + Q  + PD   
Sbjct: 316 VNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVT 375

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           Y +L+D  C +GR++   +LF  M   G   DV +Y  LI+  CKN  ++ A++L+++M 
Sbjct: 376 YTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMK 435

Query: 331 SKGIRPTVVTY 341
            + IRP V T+
Sbjct: 436 DQAIRPNVYTF 446



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++IL          +  + L   +    + PD+YTY IL++  CK G+V     V
Sbjct: 231 PDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENV 290

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++++C   D V +++L+ G C  + +  A  +F  +   G  PDV  Y+ +INGLC+
Sbjct: 291 LAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCK 350

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 ALNLFEE+   N        PD +TY+++ D LCK G +    +LF +M D   
Sbjct: 351 IKRVDEALNLFEEIHQKN------MVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQ 404

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+TY +LI   C     + A  LF +M DQ ++PNV TF ++++ LCK G++  A  
Sbjct: 405 PPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALE 464

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + ++  G   +   Y  +++G C  G ++ A  L   ME NGC+ D  ++ I+I  + 
Sbjct: 465 FFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFF 524

Query: 315 KNKEIEGALSLYSEMLSKGI 334
              E + A  L  EM+++G+
Sbjct: 525 DKDENDKAEKLVREMIARGL 544



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 172/327 (52%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++++   L K+   D    L+  +   G+ PD+ TY+IL++ FC +G+++    +
Sbjct: 196 PNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDL 255

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD  T+T L+  LC E ++ EA  +   +       DV  Y+TL++G C 
Sbjct: 256 LNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCL 315

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F  M     + GV   PD   YS + +GLCK   VD+A  LF ++  +N+
Sbjct: 316 VNEVNNAKRVFYTMT----QMGVT--PDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNM 369

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTYTSLI   C +   +    LF EM+D+G  P+V+T+N +++ LCKNG +D A  
Sbjct: 370 VPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIA 429

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M    +RP+   +  L+DG C  GR+  A E F  + + G   +V +Y ++ING C
Sbjct: 430 LFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLC 489

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K   ++ AL+L S M   G     VT+
Sbjct: 490 KEGLLDEALALQSRMEDNGCISDAVTF 516



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 2/213 (0%)

Query: 132 LCRTGHTIVAL--NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           LC   H++  L  N  + ++  N  F V   P    ++ I   L        A  L+ +M
Sbjct: 25  LCFHSHSLPPLTHNADDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQM 84

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           +   + PD  T   +I  FC+      A     +++  G QPN +T N +M  LC  GK+
Sbjct: 85  ELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKV 144

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            EA R  + ++  G R     Y  L++G C  G    A  L   +E      +V  Y ++
Sbjct: 145 KEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMI 204

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I+  CK+  ++ A  LY+EM+ KGI P VVTY+
Sbjct: 205 IDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYS 237



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 1/146 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ML     PP V ++N L   L KN H D  ++LF ++    + P++YT+ IL++  
Sbjct: 395 LFDEMLD-RGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGL 453

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+GR+         +L   +  +  T+T +I GLC E  + EA AL +++   GC  D 
Sbjct: 454 CKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDA 513

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM 148
            T+  +I           A  L  EM
Sbjct: 514 VTFEIMIRAFFDKDENDKAEKLVREM 539



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 41/94 (43%)

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+A      M  +   P    +N ++       R   A  L+  ME +    D F+  I+
Sbjct: 40  DDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNII 99

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           IN +C   ++  A S  S++L  G +P  +T NT
Sbjct: 100 INCFCHFGQVVLAFSGVSKILKLGYQPNTITLNT 133


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 204/376 (54%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M++  P P P+  FN L   +A+ K YD VL   K +   G+  D+YT  I+INC+
Sbjct: 57  LFESMIQSRPLPTPI-DFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCY 115

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++   F VLGR  +  + PD +TF++L+ G C E R+ EA AL  ++     +PD+
Sbjct: 116 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDL 175

Query: 123 FTYTTLINGLC-----------------------------------RTGHTIVALNLFEE 147
            T +TLINGLC                                   ++G++ +AL+LF +
Sbjct: 176 VTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRK 235

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M   N       K   + YS + D LCK+G  D A  LF +M+ + I  DVVTY+SLI G
Sbjct: 236 MEERN------IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++   +  EM+ + + P+VVTF+ +++   K GK+ EA  L   MI  G+ PD
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 349

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YN+L+DGFC    ++ A ++F  M S GC  D+ +Y ILIN YCK K ++  + L+ 
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 409

Query: 328 EMLSKGIRPTVVTYNT 343
           E+ SKG+ P  +TYNT
Sbjct: 410 EISSKGLIPNTITYNT 425



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 173/326 (53%), Gaps = 6/326 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  ++I+   L K+  +D  LSLF  +   G+  D+ TY+ LI   C  G+   G  +L 
Sbjct: 245 VVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLR 304

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     PD VTF++LI     E +++EA  L+ ++   G  PD  TY +LI+G C+  
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +F+ M +        C+PD +TYS + +  CK   VD    LF ++  + + P
Sbjct: 365 CLHEANQMFDLMVSKG------CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIP 418

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + +TY +L+ GFC +   N AK LF EM+ +GV P+VVT+ ++++ LC NG++++A  + 
Sbjct: 419 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 478

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E M +  +     +YN ++ G C   +V+ A  LF S+   G   DV +Y ++I G CK 
Sbjct: 479 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 538

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
             +  A  L+ +M   G  P   TYN
Sbjct: 539 GSLSEADMLFRKMKEDGCTPDDFTYN 564



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 123/262 (46%), Gaps = 6/262 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K         +F  + S G  PD+ TY+ILIN +CK  RV  G  +
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I      P+ +T+ +L+ G C   ++  A  LF ++ + G  P V TY  L++GLC 
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 467

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL +FE+M       G+        Y+ I  G+C    VD A  LF  + D+ +
Sbjct: 468 NGELNKALEIFEKMQKSRMTLGIG------IYNIIIHGMCNASKVDDAWSLFCSLSDKGV 521

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY  +I G C     +EA  LF +M + G  P+  T+N+++        +  +  
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 581

Query: 255 LLELMIQIGVRPDASVYNTLMD 276
           L+E M   G   D+S    ++D
Sbjct: 582 LIEEMKVCGFSADSSTIKMVID 603



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 65/135 (48%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++ IL   L  N   +  L +F+++    +   +  YNI+I+  C   +V   + 
Sbjct: 452 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 511

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      PD VT+  +I GLC +  + EA  LF K++  GC PD FTY  LI    
Sbjct: 512 LFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHL 571

Query: 134 RTGHTIVALNLFEEM 148
                I ++ L EEM
Sbjct: 572 GGSGLISSVELIEEM 586



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 35/178 (19%)

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQ------------------------------- 227
           ++Y   +R        N+A  LF  M+                                 
Sbjct: 36  LSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG 95

Query: 228 ----GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
               G++ ++ T  +++N  C+  K+  A  +L    ++G  PD   ++TL++GFCL GR
Sbjct: 96  MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           V+ A  L   M       D+ +   LING C    +  AL L   M+  G +P  VTY
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +NI+   +      D   SLF  L+  G+ PD+ TYN++I   CK G +S   ++  ++ 
Sbjct: 493 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 552

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
               TPD  T+  LI+     S ++ +  L  +++  G   D  T   +I+ L
Sbjct: 553 EDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 605



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 215 NEAKCLFIEMMDQGVQ----PNVVTFNVIMNELCKNG----KMDEASRLLELMIQIGVRP 266
           N     F +++++G       ++    +   E  +NG    K+++A  L E MIQ    P
Sbjct: 9   NRKASNFTQILEKGTSLLHYSSITEAKLSYKERLRNGIVDIKVNDAIDLFESMIQSRPLP 68

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
               +N L      T + +        ME NG   D+++  I+IN YC+ K++  A S+ 
Sbjct: 69  TPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVL 128

Query: 327 SEMLSKGIRPTVVTYNT 343
                 G  P  +T++T
Sbjct: 129 GRAWKLGYEPDTITFST 145


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 204/376 (54%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M++  P P P+  FN L   +A+ K YD VL   K +   G+  D+YT  I+INC+
Sbjct: 86  LFESMIQSRPLPTPI-DFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCY 144

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++   F VLGR  +  + PD +TF++L+ G C E R+ EA AL  ++     +PD+
Sbjct: 145 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDL 204

Query: 123 FTYTTLINGLC-----------------------------------RTGHTIVALNLFEE 147
            T +TLINGLC                                   ++G++ +AL+LF +
Sbjct: 205 VTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRK 264

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M   N       K   + YS + D LCK+G  D A  LF +M+ + I  DVVTY+SLI G
Sbjct: 265 MEERN------IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 318

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++   +  EM+ + + P+VVTF+ +++   K GK+ EA  L   MI  G+ PD
Sbjct: 319 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 378

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YN+L+DGFC    ++ A ++F  M S GC  D+ +Y ILIN YCK K ++  + L+ 
Sbjct: 379 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 438

Query: 328 EMLSKGIRPTVVTYNT 343
           E+ SKG+ P  +TYNT
Sbjct: 439 EISSKGLIPNTITYNT 454



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 173/326 (53%), Gaps = 6/326 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  ++I+   L K+  +D  LSLF  +   G+  D+ TY+ LI   C  G+   G  +L 
Sbjct: 274 VVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLR 333

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     PD VTF++LI     E +++EA  L+ ++   G  PD  TY +LI+G C+  
Sbjct: 334 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 393

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +F+ M +        C+PD +TYS + +  CK   VD    LF ++  + + P
Sbjct: 394 CLHEANQMFDLMVSKG------CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIP 447

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + +TY +L+ GFC +   N AK LF EM+ +GV P+VVT+ ++++ LC NG++++A  + 
Sbjct: 448 NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIF 507

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E M +  +     +YN ++ G C   +V+ A  LF S+   G   DV +Y ++I G CK 
Sbjct: 508 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 567

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
             +  A  L+ +M   G  P   TYN
Sbjct: 568 GSLSEADMLFRKMKEDGCTPDDFTYN 593



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 123/262 (46%), Gaps = 6/262 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K         +F  + S G  PD+ TY+ILIN +CK  RV  G  +
Sbjct: 377 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 436

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I      P+ +T+ +L+ G C   ++  A  LF ++ + G  P V TY  L++GLC 
Sbjct: 437 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 496

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL +FE+M       G+        Y+ I  G+C    VD A  LF  + D+ +
Sbjct: 497 NGELNKALEIFEKMQKSRMTLGIG------IYNIIIHGMCNASKVDDAWSLFCSLSDKGV 550

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY  +I G C     +EA  LF +M + G  P+  T+N+++        +  +  
Sbjct: 551 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 610

Query: 255 LLELMIQIGVRPDASVYNTLMD 276
           L+E M   G   D+S    ++D
Sbjct: 611 LIEEMKVCGFSADSSTIKMVID 632



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 65/135 (48%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++ IL   L  N   +  L +F+++    +   +  YNI+I+  C   +V   + 
Sbjct: 481 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWS 540

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      PD VT+  +I GLC +  + EA  LF K++  GC PD FTY  LI    
Sbjct: 541 LFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHL 600

Query: 134 RTGHTIVALNLFEEM 148
                I ++ L EEM
Sbjct: 601 GGSGLISSVELIEEM 615



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 35/178 (19%)

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQ------------------------------- 227
           ++Y   +R        N+A  LF  M+                                 
Sbjct: 65  LSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG 124

Query: 228 ----GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
               G++ ++ T  +++N  C+  K+  A  +L    ++G  PD   ++TL++GFCL GR
Sbjct: 125 MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 184

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           V+ A  L   M       D+ +   LING C    +  AL L   M+  G +P  VTY
Sbjct: 185 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 242



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +NI+   +      D   SLF  L+  G+ PD+ TYN++I   CK G +S   ++  ++ 
Sbjct: 522 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 581

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
               TPD  T+  LI+     S ++ +  L  +++  G   D  T   +I+ L
Sbjct: 582 EDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 634



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 215 NEAKCLFIEMMDQGVQ----PNVVTFNVIMNELCKNG----KMDEASRLLELMIQIGVRP 266
           N     F +++++G       ++    +   E  +NG    K+++A  L E MIQ    P
Sbjct: 38  NRKASNFTQILEKGTSLLHYSSITEAKLSYKERLRNGIVDIKVNDAIDLFESMIQSRPLP 97

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
               +N L      T + +        ME NG   D+++  I+IN YC+ K++  A S+ 
Sbjct: 98  TPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVL 157

Query: 327 SEMLSKGIRPTVVTYNT 343
                 G  P  +T++T
Sbjct: 158 GRAWKLGYEPDTITFST 174


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 206/376 (54%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  MLR  P  P V  FN LFG LA+ K YD VL+L K++   G+  DLYT NI+INCF
Sbjct: 77  LFQSMLRSRP-LPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCF 135

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA-------------- 108
           C+  ++   F  +G+I +  + P+ VTF +L+ GLC E R+ EA                
Sbjct: 136 CRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDL 195

Query: 109 ---------------------LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
                                L  ++ A GC+P+ FTY  ++N +C++G+T  AL+L  +
Sbjct: 196 ITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRK 255

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M +         KP  +TY+ I D LCK+G +D A   F +M+ + I  +V TY SLI  
Sbjct: 256 MEHRK------IKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGS 309

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           FC    W++   L  +M+ + + PNVVTF+ +++ L K GK+ EA  L   MI  G+ P+
Sbjct: 310 FCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPN 369

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YN+L+ G C   R++ A ++   M S GC  D+++Y ILING+CK K+++  + L+ 
Sbjct: 370 TITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFR 429

Query: 328 EMLSKGIRPTVVTYNT 343
           +M  +G+    VTY+T
Sbjct: 430 KMSLRGMIADTVTYST 445



 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 179/329 (54%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ I+   L K+   D  LS F  + + G+  +++TYN LI  FC  GR   G  +
Sbjct: 263 PHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQL 322

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++    TP+ VTF++LI  L  E ++ EA  L+ ++   G +P+  TY +LI GLC 
Sbjct: 323 LRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCN 382

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  + + M +        C PD  TY+ + +G CK   VD    LF KM    +
Sbjct: 383 DKRLDEANQMMDLMVSKG------CDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGM 436

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D VTY++LI+GFC +     AK +F EM+ QGV P ++T+ ++++ LC NG+++EA  
Sbjct: 437 IADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALG 496

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+ M +  +  D  +YN ++ G C   +V+ A  LF S+ S G  RD+ SY I+++G C
Sbjct: 497 ILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLC 556

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +  A +L+ +M   G  P   TYNT
Sbjct: 557 KRSSLSEADALFRKMKEDGYEPDGCTYNT 585



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 143/297 (48%), Gaps = 6/297 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L   L K         L+  + + G+ P+  TYN LI   C   R+     +
Sbjct: 333 PNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQM 392

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++     PD  T+  LI G C   ++ +   LF K+   G   D  TY+TLI G C+
Sbjct: 393 MDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQ 452

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +   IVA  +F+EM +     GV   P  +TY+ + DGLC  G +++A  +  +M    +
Sbjct: 453 SRKLIVAKKVFQEMVSQ----GV--HPGIMTYAILLDGLCDNGELEEALGILDQMHKCKM 506

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D+  Y  +I G C AN  ++A  LF  +  +GV+ ++ ++N++++ LCK   + EA  
Sbjct: 507 ELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADA 566

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           L   M + G  PD   YNTL+        +  + +L   M+  G   D  +  I+++
Sbjct: 567 LFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMD 623



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 30/267 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L  +K  D    +   + S G  PD++TYNILIN FCK  +V  G  +
Sbjct: 368 PNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRL 427

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++       D VT+++LI+G C   +++ A  +F ++ + G  P + TY  L++GLC 
Sbjct: 428 FRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCD 487

Query: 135 TGHTIVALNLFEEMANGNGEFGV---------VC--------------------KPDAIT 165
            G    AL + ++M     E  +         +C                    K D  +
Sbjct: 488 NGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQS 547

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  GLCK   + +A  LF KMK++   PD  TY +LIR     ND   +  L  EM 
Sbjct: 548 YNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMK 607

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEA 252
             G   +  T  ++M+ L  +G++D++
Sbjct: 608 RCGFSSDASTVKIVMDML-SSGELDKS 633



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 39/206 (18%)

Query: 175 KEGFVDKAKE----LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           + G VD  K+    LF  M      P V+ +  L         ++    L  +M  +G+ 
Sbjct: 63  RSGLVDIKKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIA 122

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG-------- 282
            ++ T N+++N  C+  K+  A   +  + ++G  P+   +NTL++G CL G        
Sbjct: 123 YDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVEL 182

Query: 283 ---------------------------RVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
                                      RV+ A +L   M +NGC  + F+YG ++N  CK
Sbjct: 183 VDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCK 242

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTY 341
           +     AL L  +M  + I+P VVTY
Sbjct: 243 SGNTASALDLLRKMEHRKIKPHVVTY 268



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%)

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K D+A  L + M++    P    +N L      T + +    L   ME  G   D+++  
Sbjct: 70  KKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLN 129

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+IN +C+ +++  A S   ++   G  P  VT+NT
Sbjct: 130 IMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNT 165


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 206/376 (54%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P P  +  FN L   +AK   ++ V+SL +++ ++G+  DLYTY+I INCF
Sbjct: 70  LFGDMVKSRPFPS-IVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCF 128

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S    VL ++++  + PD VT +SL+ G C   RI +A AL  ++   G KPD 
Sbjct: 129 CRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDT 188

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD-- 180
           FT+TTLI+GL        A+ L ++M          C+PD +TY T+ +GLCK G +D  
Sbjct: 189 FTFTTLIHGLFLHNKASEAVALVDQMVQRG------CQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 181 ---------------------------------KAKELFLKMKDENINPDVVTYTSLIRG 207
                                             A +LF +M+ + I P+VVTY SLI  
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++A  L   M+++ + PNVVTFN +++   K GK+ EA +L E MIQ  + PD
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPD 362

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YN L++GFC+  R++ AK++F  M S  C+ ++ +Y  LING+CK K +E  + L+ 
Sbjct: 363 TITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFR 422

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  +G+    VTY T
Sbjct: 423 EMSQRGLVGNTVTYTT 438



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 173/327 (52%), Gaps = 9/327 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  FN +   L K +H +  + LF  + + G+ P++ TYN LINC C  GR S    +L 
Sbjct: 258 VVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLS 317

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L     P+ VTF +LI     E +++EA  L  ++      PD  TY  LING C   
Sbjct: 318 NMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHN 377

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +F+ M + +      C P+  TY+T+ +G CK   V+   ELF +M    +  
Sbjct: 378 RLDEAKQMFKFMVSKD------CLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVG 431

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTYT++I+GF  A D + A+ +F +M+   V  +++T++++++ LC  GK+D A  + 
Sbjct: 432 NTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIF 491

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + + +  +  +  +YNT+++G C  G+V  A +LF S+       DV +Y  +I+G C  
Sbjct: 492 KYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSK 548

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + ++ A  L+ +M   G  P   TYNT
Sbjct: 549 RLLQEADDLFRKMKEDGTLPNSGTYNT 575



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 165/371 (44%), Gaps = 33/371 (8%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M+ M   P       ++ G    NK  + V +L  ++   G  PDL TY  ++N 
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV-ALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +     +L ++  +    + V F ++I  LC    +  A  LFT++   G +P+
Sbjct: 233 LCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN 292

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC---------------------- 159
           V TY +LIN LC  G    A  L   M        VV                       
Sbjct: 293 VVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHE 352

Query: 160 -------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   PD ITY+ + +G C    +D+AK++F  M  ++  P++ TY +LI GFC   
Sbjct: 353 EMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCK 412

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              +   LF EM  +G+  N VT+  I+    + G  D A  + + M+   V  D   Y+
Sbjct: 413 RVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYS 472

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+ G C  G+++ A  +F  ++ +    ++F Y  +I G CK  ++  A  L+  +   
Sbjct: 473 ILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL--- 529

Query: 333 GIRPTVVTYNT 343
            I+P VVTYNT
Sbjct: 530 SIKPDVVTYNT 540



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 139/287 (48%), Gaps = 6/287 (2%)

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           IL N    + +V     + G +++S   P  V F  L+  +   ++     +L  +++  
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G   D++TY+  IN  CR     +AL +  +M     E      PD +T S++ +G C  
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYE------PDIVTLSSLLNGYCHS 166

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
             +  A  L  +M +    PD  T+T+LI G    N  +EA  L  +M+ +G QP++VT+
Sbjct: 167 KRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             ++N LCK G +D A  LL  M    ++ +  ++NT++D  C    V  A +LF  ME+
Sbjct: 227 GTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMET 286

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G   +V +Y  LIN  C       A  L S ML K I P VVT+N 
Sbjct: 287 KGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNA 333



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 129/267 (48%), Gaps = 13/267 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N+L      +   D    +FK + S    P++ TYN LIN FCK  RV  G  +
Sbjct: 361 PDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVEL 420

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +     + VT+T++I+G         A  +F ++ +     D+ TY+ L++GLC 
Sbjct: 421 FREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCS 480

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL +F+ +     E  +        Y+T+ +G+CK G V +A +LF  +   +I
Sbjct: 481 YGKLDTALVIFKYLQKSEMELNI------FIYNTMIEGMCKAGKVGEAWDLFCSL---SI 531

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY ++I G C      EA  LF +M + G  PN  T+N ++    ++     ++ 
Sbjct: 532 KPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAE 591

Query: 255 LLELMIQIGVRPDAS----VYNTLMDG 277
           L++ M   G   DAS    V N L DG
Sbjct: 592 LIKEMRSSGFVGDASTISLVTNMLHDG 618



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 13/176 (7%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  + +++IL   L      DT L +FK L    +  +++ YN +I   CK G+V   + 
Sbjct: 465 PTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWD 524

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      PD VT+ ++I GLC++  + EA  LF K++  G  P+  TY TLI    
Sbjct: 525 LFCSL---SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANL 581

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           R      +  L +EM   +G  G     DA T S +T+ L  +G +DK+   FL M
Sbjct: 582 RDCDRAASAELIKEM-RSSGFVG-----DASTISLVTNML-HDGRLDKS---FLNM 627



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 16/164 (9%)

Query: 182 AKELFLKMKDENIN--PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           AK LF+    + I   P V ++ +L    C+   +  A   + E              ++
Sbjct: 9   AKRLFVHWNLQGIGNPPTVPSFFNLCGSGCWERSFASASGDYRE--------------IL 54

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
            N L    K+D+A  L   M++    P    +N L+       +      L   M++ G 
Sbjct: 55  RNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGI 114

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             D+++Y I IN +C+  ++  AL++ ++M+  G  P +VT ++
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 204/370 (55%), Gaps = 30/370 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M R  P P  +  F+ LF  +A+ K YD VL L K++   G+  +LYT +I+INC 
Sbjct: 59  LFQEMTRSRPRPRLI-DFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCC 117

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S  F  +G+I++  + PD VTF++LI GLC E R+ EA  L  ++   G KP +
Sbjct: 118 CRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL 177

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE---------FGVVCKP------------ 161
            T   L+NGLC  G    A+ L + M     +           V+CK             
Sbjct: 178 ITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRK 237

Query: 162 --------DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                   DA+ YS I DGLCK+G +D A  LF +M+ +    D++ YT+LIRGFCYA  
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           W++   L  +M+ + + P+VV F+ +++   K GK+ EA  L + MIQ G+ PD   Y +
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+DGFC   ++++A  +   M S GC  ++ ++ ILINGYCK   I+  L L+ +M  +G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 334 IRPTVVTYNT 343
           +    VTYNT
Sbjct: 418 VVADTVTYNT 427



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 170/357 (47%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F+ L   L         L L  R+  +G  P L T N L+N  C  G+VS   ++
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + R++ + F P+ VT+  ++K +C   +   A  L  K+     K D   Y+ +I+GLC+
Sbjct: 200 IDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK 259

Query: 135 TGHTIVALNLFEEMA--------------------NGNGEFGVV---------CKPDAIT 165
            G    A NLF EM                      G  + G             PD + 
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +S + D   KEG + +A+EL  +M    I+PD VTYTSLI GFC  N  ++A  +   M+
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            +G  PN+ TFN+++N  CK   +D+   L   M   GV  D   YNTL+ GFC  G++ 
Sbjct: 380 SKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLE 439

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            AKELF  M S     D+ SY IL++G C N E E AL ++ ++    +   +  YN
Sbjct: 440 VAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYN 496



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 166/324 (51%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
            ++I+   L K+   D   +LF  +   G   D+  Y  LI  FC  GR   G  +L  +
Sbjct: 249 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM 308

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           ++   TPD V F++LI     E ++ EA  L  ++   G  PD  TYT+LI+G C+    
Sbjct: 309 IKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQL 368

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A ++ + M +        C P+  T++ + +G CK   +D   ELF KM    +  D 
Sbjct: 369 DKANHMLDLMVSKG------CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADT 422

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY +LI+GFC       AK LF EM+ + V+P++V++ ++++ LC NG+ ++A  + E 
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEK 482

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           + +  +  D  +YN ++ G C   +V+ A +LF S+   G   DV +Y I+I G CK   
Sbjct: 483 IEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGS 542

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           +  A  L+ +M   G  P   TYN
Sbjct: 543 LSEADLLFRKMEEDGHSPNGCTYN 566



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 157/298 (52%), Gaps = 6/298 (2%)

Query: 32  HYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFT 91
            +D    L + +    + PD+  ++ LI+CF K G++     +   +++   +PD VT+T
Sbjct: 297 RWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYT 356

Query: 92  SLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151
           SLI G C E+++ +A  +   + + GC P++ T+  LING C+       L LF +M+  
Sbjct: 357 SLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMS-- 414

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
               GVV   D +TY+T+  G C+ G ++ AKELF +M    + PD+V+Y  L+ G C  
Sbjct: 415 --LRGVV--ADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDN 470

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            +  +A  +F ++    ++ ++  +N+I++ +C   K+D+A  L   +   GV+PD   Y
Sbjct: 471 GEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTY 530

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
           N ++ G C  G ++ A  LF  ME +G   +  +Y ILI  +    +   +  L  E+
Sbjct: 531 NIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEI 588



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 143/297 (48%), Gaps = 6/297 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L  C  K         L K +   G+ PD  TY  LI+ FCK  ++     +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+  TF  LI G C  + I +   LF K+   G   D  TY TLI G C 
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA  LF+EM +         +PD ++Y  + DGLC  G  +KA E+F K++   +
Sbjct: 435 LGKLEVAKELFQEMVSRR------VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM 488

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D+  Y  +I G C A+  ++A  LF  +  +GV+P+V T+N+++  LCK G + EA  
Sbjct: 489 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADL 548

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           L   M + G  P+   YN L+      G   ++ +L   ++  G   D  +  ++++
Sbjct: 549 LFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVD 605



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 121/267 (45%), Gaps = 30/267 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K    D    +   + S G  P++ T+NILIN +CK   +  G  +
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++       D VT+ +LI+G C   ++  A  LF ++ +   +PD+ +Y  L++GLC 
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469

Query: 135 TGHTIVALNLFEEMANGNGEFGV---------VC--------------------KPDAIT 165
            G    AL +FE++     E  +         +C                    KPD  T
Sbjct: 470 NGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT 529

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  GLCK+G + +A  LF KM+++  +P+  TY  LIR      D  ++  L  E+ 
Sbjct: 530 YNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIK 589

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEA 252
             G   +  T  ++++ L  +G++ ++
Sbjct: 590 RCGFSVDASTVKMVVDML-SDGRLKKS 615



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 12/188 (6%)

Query: 166 YSTITDGLCK--------EGFVD----KAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           +S+++DG  K         G VD     A +LF +M      P ++ ++ L         
Sbjct: 28  FSSVSDGKGKVSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQ 87

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           ++    L  +M  +G+  N+ T ++++N  C+  K+  A   +  +I++G  PD   ++T
Sbjct: 88  YDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFST 147

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L++G CL GRV+ A EL   M   G    + +   L+NG C N ++  A+ L   M+  G
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG 207

Query: 334 IRPTVVTY 341
            +P  VTY
Sbjct: 208 FQPNEVTY 215



 Score = 37.4 bits (85), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%)

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K D+A  L + M +   RP    ++ L      T + +   +L   ME  G   ++++  
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+IN  C+ +++  A S   +++  G  P  VT++T
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFST 147


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 205/376 (54%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P  P +  FN L   +AK K +D V+SL +++  + +   LYTYNILINCF
Sbjct: 34  LFGGMVKSRP-LPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCF 92

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S    +LG++++  + P  VT +SL+ G C   RI +A AL  ++   G +PD 
Sbjct: 93  CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 152

Query: 123 FTYTTLI-----------------------------------NGLCRTGHTIVALNLFEE 147
            T+TTLI                                   NGLC+ G T +ALNL  +
Sbjct: 153 ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNK 212

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M     E       D + ++TI D LCK   VD A  LF +M+ + I P+VVTY+SLI  
Sbjct: 213 MEAAKIE------ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 266

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++A  L  +M+++ + PN+VTFN +++   K GK  EA +L + MI+  + PD
Sbjct: 267 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 326

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YN+L++GFC+  R+++AK++F  M S  C  DV +Y  LI G+CK+K +E    L+ 
Sbjct: 327 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 386

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  +G+    VTY T
Sbjct: 387 EMSHRGLVGDTVTYTT 402



 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 181/327 (55%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  FN +   L K +H D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +L 
Sbjct: 222 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 281

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VTF +LI     E + +EA  L+  +      PD+FTY +L+NG C   
Sbjct: 282 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHD 341

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +FE M + +      C PD +TY+T+  G CK   V+   ELF +M    +  
Sbjct: 342 RLDKAKQMFEFMVSKD------CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 395

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTYT+LI+G  +  D + A+ +F +M+  GV P+++T++++++ LC NGK+++A  + 
Sbjct: 396 DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF 455

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M +  ++ D  +Y T+++G C  G+V+   +LF S+   G   +V +Y  +I+G C  
Sbjct: 456 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 515

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + ++ A +L  +M   G  P   TYNT
Sbjct: 516 RLLQEAYALLKKMKEDGPLPNSGTYNT 542



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 181/371 (48%), Gaps = 30/371 (8%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M+ M   P  +    ++ G    NK  + V +L  R+   G  P+L TY +++N 
Sbjct: 138 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV-ALVDRMVQRGCQPNLVTYGVVVNG 196

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G       +L ++  +    D V F ++I  LC    + +A  LF ++   G +P+
Sbjct: 197 LCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 256

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGN------------------GEFGVVCK--- 160
           V TY++LI+ LC  G    A  L  +M                      G+F    K   
Sbjct: 257 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYD 316

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   PD  TY+++ +G C    +DKAK++F  M  ++  PDVVTY +LI+GFC + 
Sbjct: 317 DMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSK 376

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              +   LF EM  +G+  + VT+  ++  L  +G  D A ++ + M+  GV PD   Y+
Sbjct: 377 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 436

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+DG C  G++ +A E+F  M+ +    D++ Y  +I G CK  +++    L+  +  K
Sbjct: 437 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 496

Query: 333 GIRPTVVTYNT 343
           G++P VVTYNT
Sbjct: 497 GVKPNVVTYNT 507



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 150/298 (50%), Gaps = 8/298 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L     K   +     L+  +    + PD++TYN L+N FC   R+     +
Sbjct: 290 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 349

Query: 75  LG-RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
               + + CF PD VT+ +LIKG C   R+ +   LF ++   G   D  TYTTLI GL 
Sbjct: 350 FEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 408

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A  +F++M +          PD +TYS + DGLC  G ++KA E+F  M+   
Sbjct: 409 HDGDCDNAQKVFKQMVSDG------VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 462

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I  D+  YT++I G C A   ++   LF  +  +GV+PNVVT+N +++ LC    + EA 
Sbjct: 463 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 522

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
            LL+ M + G  P++  YNTL+      G    + EL   M S   + D  + G++ N
Sbjct: 523 ALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVAN 580



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 31/279 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D M++     P + ++N L      +   D    +F+ + S   FPD+ TYN LI  F
Sbjct: 314 LYDDMIK-RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGF 372

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  RV  G  +   +       D VT+T+LI+GL  +     A  +F ++ + G  PD+
Sbjct: 373 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 432

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV------------------------ 158
            TY+ L++GLC  G    AL +F+ M     +  +                         
Sbjct: 433 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 492

Query: 159 -----CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                 KP+ +TY+T+  GLC +  + +A  L  KMK++   P+  TY +LIR      D
Sbjct: 493 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 552

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              +  L  EM       +  T  ++ N L  +G++D++
Sbjct: 553 KAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDKS 590



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  ++R   +    ++A  LF  M+     P++V FN +++ + K  K D    L E M 
Sbjct: 15  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 74

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           ++ +      YN L++ FC   +++ A  L   M   G    + +   L+NGYC  K I 
Sbjct: 75  RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 134

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A++L  +M+  G RP  +T+ T
Sbjct: 135 DAVALVDQMVEMGYRPDTITFTT 157



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 70/235 (29%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A  LF  M      P +V +  L+        ++    L  +M    +   + T+N+
Sbjct: 28  LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 87

Query: 239 IMNELCKN----------GKM-------------------------DEASRLLELMIQIG 263
           ++N  C+           GKM                          +A  L++ M+++G
Sbjct: 88  LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 147

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN------- 316
            RPD   + TL+ G  L  + + A  L   M   GC  ++ +YG+++NG CK        
Sbjct: 148 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 207

Query: 317 ----------------------------KEIEGALSLYSEMLSKGIRPTVVTYNT 343
                                       + ++ AL+L+ EM +KGIRP VVTY++
Sbjct: 208 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 262


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 134/376 (35%), Positives = 207/376 (55%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P P  +  FN L   +AK   ++ V+SL +++ ++G+  DLYTY+I INCF
Sbjct: 70  LFGDMVKSRPFPS-IVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCF 128

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S    VL ++++  + PD VT +SL+ G C   RI +A AL  ++   G KPD 
Sbjct: 129 CRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDT 188

Query: 123 FTYTTLI-----------------------------------NGLCRTGHTIVALNLFEE 147
           FT+TTLI                                   NGLC+ G   +AL+L ++
Sbjct: 189 FTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKK 248

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M  G  E       D + Y+TI DGLCK   +D A  LF +M ++ I PDV TY+SLI  
Sbjct: 249 MEKGKIE------ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++A  L  +M+++ + PNVVTF+ +++   K GK+ EA +L + MI+  + PD
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y++L++GFC+  R++ AK +F  M S  C  +V +Y  LI G+CK K +E  + L+ 
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  +G+    VTY T
Sbjct: 423 EMSQRGLVGNTVTYTT 438



 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/327 (35%), Positives = 186/327 (56%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N +   L K KH D  L+LF  +++ G+ PD++TY+ LI+C C  GR S    +L 
Sbjct: 258 VVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLS 317

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VTF++LI     E +++EA  L+ ++      PD+FTY++LING C   
Sbjct: 318 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 377

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A ++FE M + +      C P+ +TYST+  G CK   V++  ELF +M    +  
Sbjct: 378 RLDEAKHMFELMISKD------CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVG 431

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTYT+LI GF  A D + A+ +F +M+  GV PN++T+N++++ LCKNGK+ +A  + 
Sbjct: 432 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF 491

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E + +  + PD   YN +++G C  G+V    ELF ++   G   +V +Y  +I+G+C+ 
Sbjct: 492 EYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRK 551

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
              E A SL  +M   G  P   TYNT
Sbjct: 552 GSKEEADSLLKKMKEDGPLPNSGTYNT 578



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 143/287 (49%), Gaps = 6/287 (2%)

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           IL N    + +V     + G +++S   P  V F  L+  +   ++     +L  +++  
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G   D++TY+  IN  CR     +AL +  +M     E      PD +T S++ +G C  
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYE------PDIVTLSSLLNGYCHS 166

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
             +  A  L  +M +    PD  T+T+LI G    N  +EA  L  +M+ +G QP++VT+
Sbjct: 167 KRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             ++N LCK G +D A  LL+ M +  +  D  +YNT++DG C    ++ A  LF  M++
Sbjct: 227 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN 286

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G   DVF+Y  LI+  C       A  L S+M+ + I P VVT++ 
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 333



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 125/279 (44%), Gaps = 31/279 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D M++     P + +++ L      +   D    +F+ + S   FP++ TY+ LI  F
Sbjct: 350 LYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGF 408

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  RV  G  +   + +     + VT+T+LI G         A  +F ++ + G  P++
Sbjct: 409 CKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNI 468

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV---------VCK------------- 160
            TY  L++GLC+ G    A+ +FE +     E  +         +CK             
Sbjct: 469 LTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCN 528

Query: 161 -------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                  P+ I Y+T+  G C++G  ++A  L  KMK++   P+  TY +LIR      D
Sbjct: 529 LSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGD 588

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              +  L  EM   G   +  T  ++ N L  +G++D++
Sbjct: 589 REASAELIKEMRSCGFAGDASTIGLVTNML-HDGRLDKS 626



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 16/164 (9%)

Query: 182 AKELFLKMKDENIN--PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           AK LF+    + I   P V ++ +L    C+   +  A   + E              ++
Sbjct: 9   AKRLFVHWNLQGIGNPPTVPSFFNLCGSGCWERSFASASGDYRE--------------IL 54

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
            N L    K+D+A  L   M++    P    +N L+       +      L   M++ G 
Sbjct: 55  RNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGI 114

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             D+++Y I IN +C+  ++  AL++ ++M+  G  P +VT ++
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 204/370 (55%), Gaps = 30/370 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M R  P P  +  F+ LF  +A+ K YD VL L K++   G+  +LYT +I+INC 
Sbjct: 59  LFQEMTRSRPRPRLI-DFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCC 117

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S  F  +G+I++  + PD VTF++LI GLC E R+ EA  L  ++   G KP +
Sbjct: 118 CRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL 177

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE---------FGVVCKP------------ 161
            T   L+NGLC  G    A+ L + M     +           V+CK             
Sbjct: 178 ITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRK 237

Query: 162 --------DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                   DA+ YS I DGLCK+G +D A  LF +M+ +    D++ YT+LIRGFCYA  
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           W++   L  +M+ + + P+VV F+ +++   K GK+ EA  L + MIQ G+ PD   Y +
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+DGFC   ++++A  +   M S GC  ++ ++ ILINGYCK   I+  L L+ +M  +G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 334 IRPTVVTYNT 343
           +    VTYNT
Sbjct: 418 VVADTVTYNT 427



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 170/357 (47%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F+ L   L         L L  R+  +G  P L T N L+N  C  G+VS   ++
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + R++ + F P+ VT+  ++K +C   +   A  L  K+     K D   Y+ +I+GLC+
Sbjct: 200 IDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK 259

Query: 135 TGHTIVALNLFEEMA--------------------NGNGEFGVV---------CKPDAIT 165
            G    A NLF EM                      G  + G             PD + 
Sbjct: 260 DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +S + D   KEG + +A+EL  +M    I+PD VTYTSLI GFC  N  ++A  +   M+
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            +G  PN+ TFN+++N  CK   +D+   L   M   GV  D   YNTL+ GFC  G++ 
Sbjct: 380 SKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLE 439

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            AKELF  M S     D+ SY IL++G C N E E AL ++ ++    +   +  YN
Sbjct: 440 VAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYN 496



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 166/324 (51%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
            ++I+   L K+   D   +LF  +   G   D+  Y  LI  FC  GR   G  +L  +
Sbjct: 249 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM 308

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           ++   TPD V F++LI     E ++ EA  L  ++   G  PD  TYT+LI+G C+    
Sbjct: 309 IKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQL 368

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A ++ + M +        C P+  T++ + +G CK   +D   ELF KM    +  D 
Sbjct: 369 DKANHMLDLMVSKG------CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADT 422

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY +LI+GFC       AK LF EM+ + V+P++V++ ++++ LC NG+ ++A  + E 
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEK 482

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           + +  +  D  +YN ++ G C   +V+ A +LF S+   G   DV +Y I+I G CK   
Sbjct: 483 IEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGS 542

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           +  A  L+ +M   G  P   TYN
Sbjct: 543 LSEADLLFRKMEEDGHSPNGCTYN 566



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 163/353 (46%), Gaps = 30/353 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L  C  K         L K +   G+ PD  TY  LI+ FCK  ++     +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+  TF  LI G C  + I +   LF K+   G   D  TY TLI G C 
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA  LF+EM +         +PD ++Y  + DGLC  G  +KA E+F K++   +
Sbjct: 435 LGKLEVAKELFQEMVSRR------VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM 488

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D+  Y  +I G C A+  ++A  LF  +  +GV+P+V T+N+++  LCK G + EA  
Sbjct: 489 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADL 548

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL----------------------FV 292
           L   M + G  P+   YN L+      G   ++ +L                        
Sbjct: 549 LFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLA 608

Query: 293 SMESNGCMRDVFSYGILINGYC--KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M   G   DVF++  L+  +C  +N  +  A +L+  M + G +P VVTYNT
Sbjct: 609 RMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNT 661



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 168/334 (50%), Gaps = 28/334 (8%)

Query: 32  HYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFT 91
            +D    L + +    + PD+  ++ LI+CF K G++     +   +++   +PD VT+T
Sbjct: 297 RWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYT 356

Query: 92  SLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151
           SLI G C E+++ +A  +   + + GC P++ T+  LING C+       L LF +M+  
Sbjct: 357 SLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMS-- 414

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
               GVV   D +TY+T+  G C+ G ++ AKELF +M    + PD+V+Y  L+ G C  
Sbjct: 415 --LRGVVA--DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDN 470

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            +  +A  +F ++    ++ ++  +N+I++ +C   K+D+A  L   +   GV+PD   Y
Sbjct: 471 GEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTY 530

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN----------KEIEG 321
           N ++ G C  G ++ A  LF  ME +G   +  +Y ILI  +             +EI+ 
Sbjct: 531 NIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590

Query: 322 ------------ALSLYSEMLSKGIRPTVVTYNT 343
                       ALS  + ML  G  P V T+ T
Sbjct: 591 CGFSVDASTLRFALSTLARMLKAGHEPDVFTFTT 624



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 156/368 (42%), Gaps = 53/368 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K    D    +   + S G  P++ T+NILIN +CK   +  G  +
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++       D VT+ +LI+G C   ++  A  LF ++ +   +PD+ +Y  L++GLC 
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469

Query: 135 TGHTIVALNLFEEMANGNGEFGV---------VC--------------------KPDAIT 165
            G    AL +FE++     E  +         +C                    KPD  T
Sbjct: 470 NGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT 529

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE-- 223
           Y+ +  GLCK+G + +A  LF KM+++  +P+  TY  LIR      D  ++  L  E  
Sbjct: 530 YNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIK 589

Query: 224 --------------------MMDQGVQPNVVTFNVIMNELC--KNGKMDEASRLLELMIQ 261
                               M+  G +P+V TF  ++   C  +N  + +A  L + M  
Sbjct: 590 RCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKA 649

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
           +G +P+   YNT++ G      +++   +   M   GC  +  +    I+G CK      
Sbjct: 650 MGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGS 709

Query: 322 ALSLYSEM 329
           A+ L  +M
Sbjct: 710 AILLLRKM 717



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 140/342 (40%), Gaps = 65/342 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG-------- 66
           P + +FNIL     K    D  L LF++++  G+  D  TYN LI  FC++G        
Sbjct: 385 PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKEL 444

Query: 67  -------RVSPGFV--------------------VLGRILRSCFTPDAVTFTSLIKGLCA 99
                  RV P  V                    +  +I +S    D   +  +I G+C 
Sbjct: 445 FQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 504

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
            S++ +A  LF  L   G KPDV TY  +I GLC+ G    A  LF +M           
Sbjct: 505 ASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHS----- 559

Query: 160 KPDAITYSTITDGLCKEGFVDKAKEL----------------------FLKMKDENINPD 197
            P+  TY+ +      EG   K+ +L                        +M      PD
Sbjct: 560 -PNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPD 618

Query: 198 VVTYTSLIRGFCYANDWN--EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           V T+T+L+R FC   + +  +A  LF  M   G +PNVVT+N ++  L     + +   +
Sbjct: 619 VFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGV 678

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           L+ M + G +P+A   +T + G C       A  L   ME++
Sbjct: 679 LDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMEND 720



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 98/215 (45%), Gaps = 32/215 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP---- 70
           P V ++NI+ G L K         LF+++   G  P+  TYNILI      G  +     
Sbjct: 525 PDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584

Query: 71  -------GFVV-----------LGRILRSCFTPDAVTFTSLIKGLCAE--SRIMEAAALF 110
                  GF V           L R+L++   PD  TFT+L++  C E  + + +A  LF
Sbjct: 585 IEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLF 644

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
             ++A G KP+V TY T+I GL           + ++M      F   C+P+A+T ST  
Sbjct: 645 KNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQM------FERGCQPNAVTKSTFI 698

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
            GLCK+     A  L  KM  EN N DV T   ++
Sbjct: 699 SGLCKQDLHGSAILLLRKM--ENDNEDVTTKKKIL 731



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 12/188 (6%)

Query: 166 YSTITDGLCK--------EGFVD----KAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           +S+++DG  K         G VD     A +LF +M      P ++ ++ L         
Sbjct: 28  FSSVSDGKGKVSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQ 87

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           ++    L  +M  +G+  N+ T ++++N  C+  K+  A   +  +I++G  PD   ++T
Sbjct: 88  YDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFST 147

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L++G CL GRV+ A EL   M   G    + +   L+NG C N ++  A+ L   M+  G
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG 207

Query: 334 IRPTVVTY 341
            +P  VTY
Sbjct: 208 FQPNEVTY 215



 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%)

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K D+A  L + M +   RP    ++ L      T + +   +L   ME  G   ++++  
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+IN  C+ +++  A S   +++  G  P  VT++T
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFST 147


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 125/340 (36%), Positives = 193/340 (56%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           +  M+ M P P  V  FN+LFG +AK KHY T +SL K ++ IG+ P++ T+NI+INC C
Sbjct: 14  YHKMVTMKPFPC-VKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNIVINCLC 72

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++     GF VLG + +    P  VTFT+++ GLC E  + +A      L+  G + D +
Sbjct: 73  RLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRY 132

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           T   +INGLC+ GH+  AL+  ++M   N      C  D   YS + DGLCK+G V +A 
Sbjct: 133 TRGAIINGLCKVGHSSAALSYLKKMEEQN------CNLDVTAYSAVVDGLCKDGMVFEAL 186

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +LF +M  + I P++ TY  LI G C  + W EA  L   MM +G+ P+V TFNVI    
Sbjct: 187 DLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRF 246

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G +  A  +   M  +G+  +   YN+++   C+  ++  A E+F  M   GC+ ++
Sbjct: 247 LKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNI 306

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  LI+G+C+ K +  A+    EM++ G+ P VVT++T
Sbjct: 307 VTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWST 346



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 157/326 (48%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L     +     L   +   G+ PD+ T+N++   F K G +S    +
Sbjct: 199 PNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSI 258

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       + VT+ S+I   C  +++ +A  +F  +   GC P++ TY +LI+G C 
Sbjct: 259 FSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCE 318

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T +   A+    EM N NG       PD +T+ST+  G CK G    AKELF  M     
Sbjct: 319 TKNMNKAMYFLGEMVN-NG-----LDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQ 372

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ T   ++ G    +  +EA  LF E+       +++ +++I+N +C +GK+++A  
Sbjct: 373 LPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALE 432

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   GV+ D   YN +++G C  G ++ A++L + ME NGC  D  +Y + + G  
Sbjct: 433 LFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLL 492

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           +  EI  +      M  KG R    T
Sbjct: 493 RRYEISKSTKYLMFMKGKGFRANATT 518



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 160/327 (48%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +++ +   L K+      L LF ++   G+ P+L+TYN LI+  C   R      +L 
Sbjct: 166 VTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLA 225

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++R    PD  TF  +         I  A ++F+ +   G + +V TY ++I   C   
Sbjct: 226 NMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLN 285

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ +F+ M          C P+ +TY+++  G C+   ++KA     +M +  ++P
Sbjct: 286 QMKDAMEVFDLMIRKG------CLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDP 339

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DVVT+++LI GFC A     AK LF  M   G  P++ T  +I++ L K     EA  L 
Sbjct: 340 DVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLF 399

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             + ++    D  +Y+ +++G C +G++N A ELF  + S G   DV +Y I+ING CK 
Sbjct: 400 RELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKE 459

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++ A  L  +M   G  P   TYN 
Sbjct: 460 GLLDDAEDLLMKMEENGCPPDECTYNV 486



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 156/304 (51%), Gaps = 6/304 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN++ G   K        S+F  +  +G+  ++ TYN +I   C + ++     V
Sbjct: 234 PDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEV 293

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    P+ VT+ SLI G C    + +A     ++   G  PDV T++TLI G C+
Sbjct: 294 FDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCK 353

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  LF  M + +G+      PD  T + I DGL K  F  +A  LF +++  N 
Sbjct: 354 AGKPVAAKELFFVM-HKHGQL-----PDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNS 407

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + D++ Y+ ++ G C +   N+A  LF  +  +GV+ +VVT+N+++N LCK G +D+A  
Sbjct: 408 DLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAED 467

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M + G  PD   YN  + G      ++++ +  + M+  G   +  +  +LIN + 
Sbjct: 468 LLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFS 527

Query: 315 KNKE 318
            NKE
Sbjct: 528 ANKE 531



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 35/199 (17%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD A + + KM      P V  +  L         +  A  L   M   GV+PNV T N+
Sbjct: 7   VDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNI 66

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA-------KEL- 290
           ++N LC+         +L LM +IGV P    + T+++G C+ G V +A       K++ 
Sbjct: 67  VINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMG 126

Query: 291 ---------------------------FVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
                                         ME   C  DV +Y  +++G CK+  +  AL
Sbjct: 127 YESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEAL 186

Query: 324 SLYSEMLSKGIRPTVVTYN 342
            L+S+M  KGI+P + TYN
Sbjct: 187 DLFSQMTGKGIQPNLFTYN 205



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           +++  H   P + +  I+   L K   +   +SLF+ L  +    D+  Y+I++N  C  
Sbjct: 365 FVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSS 424

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G+++    +   +       D VT+  +I GLC E  + +A  L  K+   GC PD  TY
Sbjct: 425 GKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTY 484

Query: 126 TTLINGLCR 134
              + GL R
Sbjct: 485 NVFVQGLLR 493


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 135/376 (35%), Positives = 205/376 (54%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P  P +  FN L   +AK K +D V+SL +++  + +   LYTYNILINCF
Sbjct: 72  LFGGMVKSRP-LPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCF 130

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S    +LG++++  + P  VT +SL+ G C   RI +A AL  ++   G +PD 
Sbjct: 131 CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190

Query: 123 FTYTTLI-----------------------------------NGLCRTGHTIVALNLFEE 147
            T+TTLI                                   NGLC+ G T +ALNL  +
Sbjct: 191 ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNK 250

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M     E       D + ++TI D LCK   VD A  LF +M+ + I P+VVTY+SLI  
Sbjct: 251 MEAAKIE------ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++A  L  +M+++ + PN+VTFN +++   K GK  EA +L + MI+  + PD
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YN+L++GFC+  R+++AK++F  M S  C  DV +Y  LI G+CK+K +E    L+ 
Sbjct: 365 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 424

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  +G+    VTY T
Sbjct: 425 EMSHRGLVGDTVTYTT 440



 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 181/327 (55%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  FN +   L K +H D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +L 
Sbjct: 260 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 319

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VTF +LI     E + +EA  L+  +      PD+FTY +L+NG C   
Sbjct: 320 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHD 379

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +FE M + +      C PD +TY+T+  G CK   V+   ELF +M    +  
Sbjct: 380 RLDKAKQMFEFMVSKD------CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 433

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTYT+LI+G  +  D + A+ +F +M+  GV P+++T++++++ LC NGK+++A  + 
Sbjct: 434 DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF 493

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M +  ++ D  +Y T+++G C  G+V+   +LF S+   G   +V +Y  +I+G C  
Sbjct: 494 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 553

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + ++ A +L  +M   G  P   TYNT
Sbjct: 554 RLLQEAYALLKKMKEDGPLPNSGTYNT 580



 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 181/371 (48%), Gaps = 30/371 (8%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M+ M   P  +    ++ G    NK  + V +L  R+   G  P+L TY +++N 
Sbjct: 176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV-ALVDRMVQRGCQPNLVTYGVVVNG 234

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G       +L ++  +    D V F ++I  LC    + +A  LF ++   G +P+
Sbjct: 235 LCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 294

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGN------------------GEFGVVCK--- 160
           V TY++LI+ LC  G    A  L  +M                      G+F    K   
Sbjct: 295 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYD 354

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   PD  TY+++ +G C    +DKAK++F  M  ++  PDVVTY +LI+GFC + 
Sbjct: 355 DMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSK 414

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              +   LF EM  +G+  + VT+  ++  L  +G  D A ++ + M+  GV PD   Y+
Sbjct: 415 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 474

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+DG C  G++ +A E+F  M+ +    D++ Y  +I G CK  +++    L+  +  K
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534

Query: 333 GIRPTVVTYNT 343
           G++P VVTYNT
Sbjct: 535 GVKPNVVTYNT 545



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 150/298 (50%), Gaps = 8/298 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L     K   +     L+  +    + PD++TYN L+N FC   R+     +
Sbjct: 328 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 387

Query: 75  LG-RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
               + + CF PD VT+ +LIKG C   R+ +   LF ++   G   D  TYTTLI GL 
Sbjct: 388 FEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A  +F++M +          PD +TYS + DGLC  G ++KA E+F  M+   
Sbjct: 447 HDGDCDNAQKVFKQMVSDG------VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 500

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I  D+  YT++I G C A   ++   LF  +  +GV+PNVVT+N +++ LC    + EA 
Sbjct: 501 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 560

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
            LL+ M + G  P++  YNTL+      G    + EL   M S   + D  + G++ N
Sbjct: 561 ALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVAN 618



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 31/279 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D M++     P + ++N L      +   D    +F+ + S   FPD+ TYN LI  F
Sbjct: 352 LYDDMIK-RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGF 410

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  RV  G  +   +       D VT+T+LI+GL  +     A  +F ++ + G  PD+
Sbjct: 411 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 470

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV------------------------ 158
            TY+ L++GLC  G    AL +F+ M     +  +                         
Sbjct: 471 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 530

Query: 159 -----CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                 KP+ +TY+T+  GLC +  + +A  L  KMK++   P+  TY +LIR      D
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              +  L  EM       +  T  ++ N L  +G++D++
Sbjct: 591 KAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDKS 628



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  ++R   +    ++A  LF  M+     P++V FN +++ + K  K D    L E M 
Sbjct: 53  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 112

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           ++ +      YN L++ FC   +++ A  L   M   G    + +   L+NGYC  K I 
Sbjct: 113 RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A++L  +M+  G RP  +T+ T
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTT 195



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 35/200 (17%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A  LF  M      P +V +  L+        ++    L  +M    +   + T+N+
Sbjct: 66  LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125

Query: 239 IMNELCKN----------GKM-------------------------DEASRLLELMIQIG 263
           ++N  C+           GKM                          +A  L++ M+++G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            RPD   + TL+ G  L  + + A  L   M   GC  ++ +YG+++NG CK  + + AL
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           +L ++M +  I   VV +NT
Sbjct: 246 NLLNKMEAAKIEADVVIFNT 265


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 135/340 (39%), Positives = 201/340 (59%), Gaps = 15/340 (4%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  ML M  +PP +  FN +    AK KHY TV+SL +RL    + PD +T NILINCFC
Sbjct: 51  FHRMLCMRHTPP-IIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFC 109

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +G+++  F VL +IL+  + PD VT T+LIKGLC + ++ +A     KL A G + D  
Sbjct: 110 HLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQV 169

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLING+C+ G T  A+ L   +       G + +P+ + Y+TI D LCK   V +A 
Sbjct: 170 SYGTLINGVCKIGETRAAIQLLRRID------GRLTEPNVVMYNTIIDCLCKRKLVSEAC 223

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+ +VVTY+++I GFC      EA     EM+ + + P+V  +N +++ L
Sbjct: 224 NLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDAL 283

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K GK+ EA  +L ++++  ++P+   YNTL+DG+        AK +F ++   G   DV
Sbjct: 284 HKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGY--------AKHVFNAVGLMGVTPDV 335

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +SY I+IN  CK K +E AL+LY EM  K + P  VTYN+
Sbjct: 336 WSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNS 375



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 171/330 (51%), Gaps = 15/330 (4%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P V  +N +  CL K K      +LF  ++  G+  ++ TY+ +I+ FC +G+++   
Sbjct: 199 TEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEAL 258

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
             L  ++     PD   + +L+  L  E ++ EA  +   +     KP+V TY TLI+G 
Sbjct: 259 GFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGY 318

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            +             + N  G  GV   PD  +Y+ + + LCK   V++A  L+ +M  +
Sbjct: 319 AK------------HVFNAVGLMGVT--PDVWSYNIMINRLCKIKRVEEALNLYKEMHQK 364

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N+ P+ VTY SLI G C +   + A  L  EM D+G   NV+T+N ++N LCKNG++D+A
Sbjct: 365 NMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKA 424

Query: 253 SRLLELMIQIGVRPDASVYNTLMDG-FCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
             L+  M   G++PD    N L+ G  C   R+  A+ LF  +   G   +V++Y I+I 
Sbjct: 425 IALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIY 484

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G+CK   ++ A +L S+M   G  P  +T+
Sbjct: 485 GHCKEGLLDEAYALQSKMEDSGCSPNAITF 514



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 154/286 (53%), Gaps = 15/286 (5%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD+Y YN L++   K G+V     VL  I+++C  P+ +T+ +LI G         A  +
Sbjct: 271 PDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGY--------AKHV 322

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F  +   G  PDV++Y  +IN LC+      ALNL++EM   N        P+ +TY+++
Sbjct: 323 FNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKN------MVPNTVTYNSL 376

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DGLCK G +  A +L  +M D   + +V+TY SLI G C     ++A  L  +M DQG+
Sbjct: 377 IDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGI 436

Query: 230 QPNVVTFNVIMNEL-CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           QP++ T N++++ L CK  ++  A  L + ++  G  P+   YN ++ G C  G ++ A 
Sbjct: 437 QPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAY 496

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            L   ME +GC  +  ++ I+I    +  E + A  L  EM+++G+
Sbjct: 497 ALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARGL 542



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 129/251 (51%), Gaps = 15/251 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L    AK+        +F  +  +G+ PD+++YNI+IN  CK+ RV     +
Sbjct: 306 PNVITYNTLIDGYAKH--------VFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNL 357

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+ VT+ SLI GLC   RI  A  L  ++   G   +V TY +LINGLC+
Sbjct: 358 YKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCK 417

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL-CKEGFVDKAKELFLKMKDEN 193
            G    A+ L  +M +         +PD  T + +  GL CK   +  A+ LF  + D+ 
Sbjct: 418 NGQLDKAIALINKMKDQG------IQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKG 471

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +P+V TY  +I G C     +EA  L  +M D G  PN +TF +I+  L + G+ D+A 
Sbjct: 472 YHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAE 531

Query: 254 RLLELMIQIGV 264
           +LL  MI  G+
Sbjct: 532 KLLCEMIARGL 542



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD A   F +M      P ++ +  ++  F     +     L   +  + +QP+  T N+
Sbjct: 44  VDDALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNI 103

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C  G+++ A  +L  +++ G +PD     TL+ G CL G+V +A      + + G
Sbjct: 104 LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQG 163

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              D  SYG LING CK  E   A+ L   +  +   P VV YNT
Sbjct: 164 FRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNT 208


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 131/342 (38%), Positives = 193/342 (56%), Gaps = 8/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINC 61
           +F  M RM P  P V  F +L G + + KHY T +SL K + +S+G+  D  T NI+INC
Sbjct: 63  LFQGMARMKP-LPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLNIVINC 121

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C++  V+ GF VLG + +    P  +T T+LI GLC +  + +A  L   +       D
Sbjct: 122 LCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLD 181

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V+TY  LINGLC+TG T+ A+    +M   N       KP+ + YSTI DGLCK+G V +
Sbjct: 182 VYTYGVLINGLCKTGDTLAAVGWLRKMEERN------WKPNVVVYSTIMDGLCKDGLVSE 235

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L  +M  + + P++VTY  LI+G C    W EA  L  EMM  G++P++   N++++
Sbjct: 236 ALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVD 295

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK GK+ +A  ++  MI  G  PD   YN+L+  +CL  ++N A  +F  M S G + 
Sbjct: 296 AFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLP 355

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D+  +  LI+G+CK+K I  A+ L  EM   G  P V T+ T
Sbjct: 356 DIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTT 397



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 160/328 (48%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+      L+L   +N  G+ P+L TY  LI   C  GR      +
Sbjct: 215 PNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSL 274

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD      L+   C E ++M+A ++   +   G  PDVFTY +LI+  C 
Sbjct: 275 LDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCL 334

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +F  M +  G       PD + ++++  G CK+  ++KA  L  +M     
Sbjct: 335 QNKMNEAMRVFHLMVS-RGRL-----PDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGF 388

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV T+T+LI GFC A     AK LF+ M   G  PN+ T  VI++ LCK   + EA  
Sbjct: 389 VPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVS 448

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M +  +  +  +Y+ L+DG C  G++N A ELF S+   G   +V+ Y I+I G C
Sbjct: 449 LAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLC 508

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ A  L   M   G  P   TYN
Sbjct: 509 KQGSLDKAEDLLINMEENGCLPNNCTYN 536



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 169/326 (51%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L   L     +    SL   +  +G+ PDL   NIL++ FCK G+V     V
Sbjct: 250 PNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSV 309

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +G ++ +   PD  T+ SLI   C ++++ EA  +F  + + G  PD+  +T+LI+G C+
Sbjct: 310 IGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCK 369

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A++L EEM+    + G V  PD  T++T+  G C+ G    AKELFL M     
Sbjct: 370 DKNINKAMHLLEEMS----KMGFV--PDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQ 423

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ T   ++ G C  N  +EA  L   M    +  N+V ++++++ +C  GK++ A  
Sbjct: 424 VPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWE 483

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++ +  +Y  ++ G C  G +++A++L ++ME NGC+ +  +Y + + G  
Sbjct: 484 LFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLL 543

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
             KEI  ++   + M  KG      T
Sbjct: 544 TKKEIARSIKYLTIMRDKGFSVDAAT 569



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 151/315 (47%), Gaps = 7/315 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M++M    P +   NIL     K        S+   +   G  PD++TYN LI+ +
Sbjct: 274 LLDEMMKM-GMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIY 332

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   +++    V   ++     PD V FTSLI G C +  I +A  L  ++   G  PDV
Sbjct: 333 CLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDV 392

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+TTLI G C+ G  + A  LF  M     ++G V  P+  T + I DGLCKE  + +A
Sbjct: 393 ATWTTLIGGFCQAGRPLAAKELFLNMH----KYGQV--PNLQTCAVILDGLCKENLLSEA 446

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M+  N++ ++V Y+ L+ G C A   N A  LF  +  +G+Q NV  + +++  
Sbjct: 447 VSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKG 506

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +D+A  LL  M + G  P+   YN  + G      + R+ +    M   G   D
Sbjct: 507 LCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVD 566

Query: 303 VFSYGILINGYCKNK 317
             +   +IN    N+
Sbjct: 567 AATTEFIINYLSTNE 581


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  250 bits (639), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 132/340 (38%), Positives = 199/340 (58%), Gaps = 22/340 (6%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  ML ++P+P  V  F  +   L K KHY TV+SLF +L   G+ P++ + +ILINC+C
Sbjct: 59  FHRMLLLNPAPS-VIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYC 117

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +G++   F +  +IL+  + P+ +T T+L+KG C   ++ EA      + A G   +  
Sbjct: 118 HLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQV 177

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+ G T  AL +  ++       G +   D + YSTI DGLCK+  V+ A 
Sbjct: 178 SYGTLINGLCKIGETRAALQMLRQIE------GKLVSTDVVMYSTIIDGLCKDKLVNDAY 231

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL+ +M  + I+P VVT  SLI G+C    + EA  L  EM+ + + P+V TFN++++ L
Sbjct: 232 ELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDAL 291

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA   + +M++ GV PD   Y++LMDG+CL   VN+AK +             
Sbjct: 292 CKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHV------------- 338

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             Y I+ING+CK K ++ ALSL+ EM  + I P  VTYN+
Sbjct: 339 --YSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNS 376



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 170/332 (51%), Gaps = 14/332 (4%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  ++ +   L K+K  +    L+  + +  + P + T N LI  +C +G+    F +L 
Sbjct: 211 VVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLR 270

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     PD  TF  L+  LC E +I EA +    +   G  PDV TY++L++G C   
Sbjct: 271 EMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVN 330

Query: 137 HTIVALNLFEEMANGNGEFGVVCK--------------PDAITYSTITDGLCKEGFVDKA 182
               A +++  + NG  +  +V K              PD +TY+++ DGLCK G +  A
Sbjct: 331 EVNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYA 390

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL  +M+D     D++TY SLI   C  +  ++A  L  ++ DQG+Q ++ T+N++++ 
Sbjct: 391 WELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDG 450

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G++ +A  + + ++  G       Y  +++G CL G +N A+ L   ME NGC+ D
Sbjct: 451 LCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPD 510

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
             +   +I    +N + E A  L  EM+++G+
Sbjct: 511 AVTCETIIRALFENDKNERAEKLLREMIARGL 542



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 153/319 (47%), Gaps = 29/319 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           ++  M+    SP  V   ++++G C+     +     L + +    + PD+YT+NIL++ 
Sbjct: 233 LYSEMITKRISPTVVTLNSLIYGYCIVG--QFKEAFGLLREMVLKNINPDVYTFNILVDA 290

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL--------------------IKGLCAES 101
            CK G++      +  +++    PD VT++SL                    I G C   
Sbjct: 291 LCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIK 350

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
            + +A +LF ++R     PD  TY +LI+GLC++G    A  L +EM +           
Sbjct: 351 MVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQP------A 404

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           D ITY+++ D LCK   VDKA  L  K+KD+ I  D+ TY  LI G C      +A+ +F
Sbjct: 405 DIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIF 464

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +++ +G    V T+ +++N LC  G ++EA  LL  M   G  PDA    T++      
Sbjct: 465 QDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFEN 524

Query: 282 GRVNRAKELFVSMESNGCM 300
            +  RA++L   M + G +
Sbjct: 525 DKNERAEKLLREMIARGLL 543



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 35/200 (17%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD     F +M   N  P V+ +  ++        +     LF ++   G++PN+V+ ++
Sbjct: 52  VDDLVSSFHRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSI 111

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C  G+M  A  +   ++++G  P+     TL+ GFCL  +V  A      + + G
Sbjct: 112 LINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALG 171

Query: 299 CMRDVFSYGILINGYCKN----------KEIEGAL------------------------- 323
              +  SYG LING CK           ++IEG L                         
Sbjct: 172 FHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAY 231

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            LYSEM++K I PTVVT N+
Sbjct: 232 ELYSEMITKRISPTVVTLNS 251


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 199/340 (58%), Gaps = 6/340 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+++L      P +  F  + G L K  HY  V+SL +++   G+  +L T +ILINCF 
Sbjct: 56  FNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFS 115

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++G  S  F V   IL+  + PDA+T T+LIKGLC +  I +A     K+ A G + +  
Sbjct: 116 QLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQV 175

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+ G T  AL +   +       G + + D + Y+TI DG+CK+  V+ A 
Sbjct: 176 SYRTLINGLCKVGQTKAALEMLRRID------GKLVRLDVVMYNTIIDGVCKDKLVNDAF 229

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           + + +M  + I P VVTY +LI G C      +A  L  +M+ + + P V TF+++++  
Sbjct: 230 DFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAF 289

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  +  +M++  V+P+   YN+LM+G+CL   VN+A+ +F +M   G   DV
Sbjct: 290 CKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDV 349

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY I+I+G+CK K ++ A+ L+ EM  K I P VVTYN+
Sbjct: 350 HSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNS 389



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 185/348 (53%), Gaps = 19/348 (5%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFG-CLAKNKH-----YDTVLSLFKRLNSIGLFPDLYT 54
           F +F  +L+    P  +    ++ G CL  + H     +D VL+L  +LN +       +
Sbjct: 124 FSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQV-------S 176

Query: 55  YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR 114
           Y  LIN  CK+G+      +L RI       D V + ++I G+C +  + +A   ++++ 
Sbjct: 177 YRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMV 236

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
           A    P V TY TLI GLC  G    A+ L  +M   N        P   T+S + D  C
Sbjct: 237 AKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILEN------INPTVYTFSILVDAFC 290

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           KEG V +AK +F+ M  +++ P++VTY SL+ G+C  N+ N+A+ +F  M   GV P+V 
Sbjct: 291 KEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVH 350

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           +++++++  CK   +DEA +L E M    + PD   YN+L+DG C +GR++ A +L   M
Sbjct: 351 SYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEM 410

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              G   ++ +Y  L++  CKN  ++ A+ L +++    I+P+V TYN
Sbjct: 411 HDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYN 458



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 160/299 (53%), Gaps = 6/299 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N +   + K+K  +     +  + +  + P + TYN LI   C MG++     +L 
Sbjct: 209 VVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLH 268

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           +++     P   TF+ L+   C E ++ EA  +F  +     KP++ TY +L+NG C   
Sbjct: 269 KMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVN 328

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A ++F  MA    + GV   PD  +YS +  G CK   VD+A +LF +M  + I P
Sbjct: 329 EVNKAESIFNTMA----QIGVA--PDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFP 382

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DVVTY SLI G C +   + A  L  EM D+G  PN++T+N +++ LCKN  +D+A  LL
Sbjct: 383 DVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELL 442

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
             +    ++P    YN L++G C +GR+  A+++F  +  NG   DV++Y  +I G+CK
Sbjct: 443 TKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCK 501



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 149/273 (54%), Gaps = 12/273 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L         + L  ++    + P +YT++IL++ FCK G+V     V
Sbjct: 242 PTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNV 301

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    P+ VT+ SL+ G C  + + +A ++F  +   G  PDV +Y+ +I+G C+
Sbjct: 302 FVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCK 361

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
                 A+ LFEEM          CK   PD +TY+++ DGLCK G +  A +L  +M D
Sbjct: 362 IKMVDEAMKLFEEMH---------CKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHD 412

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               P+++TY SL+   C  +  ++A  L  ++ D  +QP+V T+N+++N LCK+G++ +
Sbjct: 413 RGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKD 472

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           A ++ E ++  G   D   YNT++ GFC  G V
Sbjct: 473 AQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFV 505



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 36/172 (20%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ M ++  +P  V S++I+     K K  D  + LF+ ++   +FPD+ TYN LI+  
Sbjct: 336 IFNTMAQIGVAPD-VHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGL 394

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP-- 120
           CK GR+S    ++G +      P+ +T+ SL+  LC    + +A  L TKL+    +P  
Sbjct: 395 CKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSV 454

Query: 121 ---------------------------------DVFTYTTLINGLCRTGHTI 139
                                            DV+TY T+I G C+ G  I
Sbjct: 455 CTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVI 506



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           L+ H   P VC++NIL   L K+        +F+ +   G   D+YTYN +I  FCK G 
Sbjct: 445 LKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGF 504

Query: 68  VSPGF 72
           V P F
Sbjct: 505 VIPQF 509


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 126/340 (37%), Positives = 201/340 (59%), Gaps = 5/340 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+++L M+   PP+  FN +   L K  H+   +S  +++   G+ P+++T+NILINCF 
Sbjct: 40  FNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFS 99

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + +++  F ++ +IL+  + PD VT  +L++GLC   ++ EA      +       D  
Sbjct: 100 HLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQV 159

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC++G T  AL L  ++     E  ++ +PD I Y+ I D  CK+  V  A 
Sbjct: 160 SYGTLINGLCKSGETRAALQLLRKI-----EGLLLVRPDVIMYTAIIDSFCKDKLVIDAY 214

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M  + I P+VVT+ SLI GFC      EA  L  EM    V PNV TFN++++ L
Sbjct: 215 DLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGL 274

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G++ +A+ +L +MI+ GV P+   Y +LMDG+ L   VN+AK +F ++   G   +V
Sbjct: 275 CKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNV 334

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY ++ING CKNK ++ A+ L+ EM  K + P  VTY++
Sbjct: 335 HSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSS 374



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 183/370 (49%), Gaps = 30/370 (8%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F   + +    P + +FNIL  C +     +   S+  ++  +G  PD  T N L+   C
Sbjct: 75  FSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLC 134

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDV 122
             G+V         ++R  F  D V++ +LI GLC       A  L  K+      +PDV
Sbjct: 135 LNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDV 194

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV------------------------ 158
             YT +I+  C+    I A +L+ EM        VV                        
Sbjct: 195 IMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNE 254

Query: 159 -----CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                  P+  T++ + DGLCKEG V KA  +   M  + + P+VVTYTSL+ G+    +
Sbjct: 255 MSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKE 314

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            N+AK +F  +  +GV PNV +++V++N LCKN  +DEA +L + M    + P+   Y++
Sbjct: 315 VNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSS 374

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+DG C +GR++   +L   + + G   ++ +Y  L+NG CKN +++ A++L ++M  +G
Sbjct: 375 LIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEG 434

Query: 334 IRPTVVTYNT 343
           I+P + TY T
Sbjct: 435 IQPDMSTYTT 444



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 176/355 (49%), Gaps = 30/355 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVVLGR 77
           S+  L   L K+      L L +++  + L  PD+  Y  +I+ FCK   V   + +   
Sbjct: 160 SYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSE 219

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           ++     P+ VTF SLI G C   ++ EA  L  ++      P+V+T+  LI+GLC+ G 
Sbjct: 220 MIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGE 279

Query: 138 TIVALNLFEEMANGNGEFGVV-----------------------------CKPDAITYST 168
              A ++   M     E  VV                               P+  +YS 
Sbjct: 280 VKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSV 339

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           + +GLCK   VD+A +LF +M  +N+ P+ VTY+SLI G C +   ++   L  E+ ++G
Sbjct: 340 MINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRG 399

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
              N++T+N ++N LCKN ++D+A  LL  M   G++PD S Y TL+DG C  GR+  A+
Sbjct: 400 QPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQ 459

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++  +   G   ++  Y ++ING CK    + ALSL S+M   G  P  VTY T
Sbjct: 460 RIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYET 514



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 169/318 (53%), Gaps = 6/318 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L             + L   ++   + P++YT+NILI+  CK G V     V
Sbjct: 227 PNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSV 286

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    P+ VT+TSL+ G      + +A  +F  +   G  P+V +Y+ +INGLC+
Sbjct: 287 LSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCK 346

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ LF+EM   N        P+ +TYS++ DGLCK G +    +L  ++ +   
Sbjct: 347 NKMVDEAVKLFKEMHLKN------MTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQ 400

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +++TY SL+ G C  +  ++A  L  +M D+G+QP++ T+  +++ LCKNG++ +A R
Sbjct: 401 PANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQR 460

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + ++  G   +  +Y  +++G C  G  + A  L   ME NGCM D  +Y  LI+   
Sbjct: 461 IYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALF 520

Query: 315 KNKEIEGALSLYSEMLSK 332
           KN +   A+ L  EM+++
Sbjct: 521 KNNKNGKAVKLLREMIAR 538



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 67/136 (49%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
            P  + ++N L   L KN   D  ++L  ++   G+ PD+ TY  L++  CK GR+    
Sbjct: 400 QPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQ 459

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   +L   +  +   +T +I GLC E    EA +L +++   GC PD  TY TLI+ L
Sbjct: 460 RIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISAL 519

Query: 133 CRTGHTIVALNLFEEM 148
            +      A+ L  EM
Sbjct: 520 FKNNKNGKAVKLLREM 535


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/340 (36%), Positives = 193/340 (56%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           +  M+ M P P  V  FN+LFG +AK KHY T +SL K ++ IG+ P++ T+NI+INC C
Sbjct: 66  YHKMVTMKPFPC-VKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVINCLC 124

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++     GF VLG + +    P  VTFT+++ GLC E  + +A      L+  G + D +
Sbjct: 125 RLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRY 184

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           T   +INGLC+ GH+  AL+  ++M   N      C  D   Y+ + DGLCK+G V +A 
Sbjct: 185 TRGAIINGLCKVGHSSAALSYLKKMEEQN------CNLDVTAYNAVVDGLCKDGMVFEAW 238

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +LF +M  + I PD+ TY  LI G C  + W EA  L   MM +G+ P+V TFNVI    
Sbjct: 239 DLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRF 298

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G +  A  +   M  +G+  D   Y++++   C+  ++  A E+F  M   GC+ ++
Sbjct: 299 LKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNI 358

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  LI+G+C+ K +  A+    EM++ G+ P +VT+NT
Sbjct: 359 VTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNT 398



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 165/363 (45%), Gaps = 41/363 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  +   L    +    +     L  +G   D YT   +IN  CK+G  S     
Sbjct: 146 PSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSY 205

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC- 133
           L ++       D   + +++ GLC +  + EA  LF+++   G +PD+FTY  LI+GLC 
Sbjct: 206 LKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCN 265

Query: 134 ----------------------------------RTGHTIVALNLFEEMANGNGEFGVVC 159
                                             +TG    A ++F  M    G  G+  
Sbjct: 266 FDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFM----GHMGI-- 319

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D +TYS+I    C    +  A E+F  M  +   P++VTYTSLI G+C   + N+A  
Sbjct: 320 EHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMY 379

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
              EM++ G+ PN+VT+N ++   CK GK   A  L  +M + G  PD      ++DG  
Sbjct: 380 FLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLF 439

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
                + A  LF  +E      D+  Y I++NG C + ++  AL L+S + SKG++  VV
Sbjct: 440 KCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVV 499

Query: 340 TYN 342
           TYN
Sbjct: 500 TYN 502



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 159/326 (48%), Gaps = 6/326 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N +   L K+        LF ++   G+ PDL+TYN LI+  C   R      +L 
Sbjct: 218 VTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLA 277

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++R    PD  TF  +         I  A ++F+ +   G + DV TY+++I   C   
Sbjct: 278 NMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLN 337

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ +F+ M          C P+ +TY+++  G C+   ++KA     +M +  ++P
Sbjct: 338 QMKDAMEVFDLMIRKG------CLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDP 391

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           ++VT+ +LI GFC A     AK LF  M   G  P++ T  +I++ L K     EA  L 
Sbjct: 392 NIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLF 451

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             + ++    D  +Y+ +++G C +G++N A ELF  + S G   DV +Y I+ING CK 
Sbjct: 452 RELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKE 511

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
             ++ A  L  +M   G  P   TYN
Sbjct: 512 GLLDDAEDLLMKMEENGCPPDECTYN 537



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 158/326 (48%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L     +     L   +   G+ PD+ T+N++   F K G +S    +
Sbjct: 251 PDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSI 310

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       D VT++S+I   C  +++ +A  +F  +   GC P++ TYT+LI+G C 
Sbjct: 311 FSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCE 370

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A+    EM N NG       P+ +T++T+  G CK G    AKELF  M     
Sbjct: 371 IKNMNKAMYFLGEMVN-NG-----LDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQ 424

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ T   ++ G    +  +EA  LF E+       +++ +++I+N +C +GK+++A  
Sbjct: 425 LPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALE 484

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   GV+ D   YN +++G C  G ++ A++L + ME NGC  D  +Y + + G  
Sbjct: 485 LFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLL 544

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           +  EI  +      M  KG R    T
Sbjct: 545 RRYEISKSTKYLMFMKGKGFRANATT 570



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 156/304 (51%), Gaps = 6/304 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN++ G   K        S+F  +  +G+  D+ TY+ +I   C + ++     V
Sbjct: 286 PDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEV 345

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    P+ VT+TSLI G C    + +A     ++   G  P++ T+ TLI G C+
Sbjct: 346 FDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCK 405

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  LF  M + +G+      PD  T + I DGL K  F  +A  LF +++  N 
Sbjct: 406 AGKPVAAKELFFVM-HKHGQL-----PDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNS 459

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + D++ Y+ ++ G C +   N+A  LF  +  +GV+ +VVT+N+++N LCK G +D+A  
Sbjct: 460 DLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAED 519

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M + G  PD   YN  + G      ++++ +  + M+  G   +  +  +LIN + 
Sbjct: 520 LLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFS 579

Query: 315 KNKE 318
            NKE
Sbjct: 580 ANKE 583



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 91/220 (41%), Gaps = 42/220 (19%)

Query: 165 TYSTIT-------DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           TY++I        D L     VD A + + KM      P V  +  L         +  A
Sbjct: 38  TYASINTSRAQFLDSLRNVKSVDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTA 97

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             L   M   GV+PNV T N+++N LC+         +L LM +IGV P    + T+++G
Sbjct: 98  ISLIKHMSYIGVKPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNG 157

Query: 278 FCLTGRVNRA-------KEL----------------------------FVSMESNGCMRD 302
            C+ G V +A       K++                               ME   C  D
Sbjct: 158 LCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLD 217

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           V +Y  +++G CK+  +  A  L+S+M  KGI+P + TYN
Sbjct: 218 VTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYN 257



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           +++  H   P + +  I+   L K   +   +SLF+ L  +    D+  Y+I++N  C  
Sbjct: 417 FVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSS 476

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G+++    +   +       D VT+  +I GLC E  + +A  L  K+   GC PD  TY
Sbjct: 477 GKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTY 536

Query: 126 TTLINGLCR 134
              + GL R
Sbjct: 537 NVFVQGLLR 545


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 211/359 (58%), Gaps = 24/359 (6%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+ MHP P  +  F  + G +AK ++Y T + L+  +   G+ P   T+NILINCF
Sbjct: 41  LFHRMVDMHPLPS-IVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNILINCF 99

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C MG++   F V+G+IL+    P+ VTFT+L+KG C   ++++A  ++ ++ A   + D 
Sbjct: 100 CHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARRIRFDD 159

Query: 123 FTYTTLINGLCRT--GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
             Y TLINGLC++  G    A+ L ++M     E   + KP+ I Y+T+  GLCK+G ++
Sbjct: 160 VLYGTLINGLCKSKIGKPRAAVQLLQKM-----EERQLVKPNLIMYNTVVHGLCKDGNIN 214

Query: 181 KAKELFLKMKDENINPDVVTY----------------TSLIRGFCYANDWNEAKCLFIEM 224
           +A+ L  KM  + I PD+ TY                TSL+ GFC  N  +EA+ LF  M
Sbjct: 215 EARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVM 274

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +++G Q +++ +N++MN  C N K+ EA +L  +M++ G +PD   Y  LM G+CL  +V
Sbjct: 275 IERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKV 334

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + A+ LF  M   G + DV+SY ILI GYCK + +  A++L  +M  K + P ++TYN+
Sbjct: 335 DEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNS 393



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 150/314 (47%), Gaps = 8/314 (2%)

Query: 30  NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
           N   D    LF  +   G   D+  YNIL+N +C   +V     +   ++     PD +T
Sbjct: 261 NNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTIT 320

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           +T L+ G C   ++ EA  LF  +   G  PDV++Y  LI G C+      A+NL E+M 
Sbjct: 321 YTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMF 380

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-NINPDVVTYTSLIRGF 208
             N        P+ ITY+++ DGLCK G +  A +L  +M       PDV TY  L+   
Sbjct: 381 LKN------LVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESL 434

Query: 209 CYANDWNEAKCLFIEMM-DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           C      +A   F  ++ ++   PNV ++N++++  CKN ++DEA  L   M    + PD
Sbjct: 435 CRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPD 494

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YN L+D      ++++A  L V +   G   ++ +Y ILING  K    + A  +  
Sbjct: 495 IVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKISL 554

Query: 328 EMLSKGIRPTVVTY 341
            +  +G  P V TY
Sbjct: 555 YLSIRGYHPDVKTY 568



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 166/365 (45%), Gaps = 62/365 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N +   L K+ + +    L  ++   G+FPD++TY+ LI   C+ G+       
Sbjct: 195 PNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRK----- 249

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
                           TSL+ G C  +++ EA  LF  +   G + D+  Y  L+NG C 
Sbjct: 250 --------------EVTSLLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCL 295

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF  M    GE     +PD ITY+ +  G C    VD+A+ LF  M +  +
Sbjct: 296 NNKVGEARKLFHMMVE-RGE-----QPDTITYTILMHGYCLIDKVDEARNLFHGMIERGL 349

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV +Y  LI+G+C      EA  L  +M  + + PN++T+N +++ LCK+G + +A +
Sbjct: 350 VPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWK 409

Query: 255 LL-ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME-SNGCMRDVFSYGILING 312
           L+ E+       PD + YN L++  C    V +A   F  +        +V+SY ILI+G
Sbjct: 410 LVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISG 469

Query: 313 YCKNKEIEGALSLYSEM-----------------------------------LSKGIRPT 337
            CKN+ ++ A++L++ M                                   + +GI P 
Sbjct: 470 CCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPN 529

Query: 338 VVTYN 342
           + TYN
Sbjct: 530 LRTYN 534



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 148/300 (49%), Gaps = 8/300 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++NIL      N        LF  +   G  PD  TY IL++ +C + +V     +  
Sbjct: 283 IINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFH 342

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     PD  ++  LIKG C   R+ EA  L   +      P++ TY ++++GLC++G
Sbjct: 343 GMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSG 402

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK-DENIN 195
             + A  L +EM      +     PD  TY+ + + LC+   V+KA   F  +  + +  
Sbjct: 403 GILDAWKLVDEM-----HYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFA 457

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+V +Y  LI G C     +EA  LF  M  + + P++VT+N++++ L    ++D+A  L
Sbjct: 458 PNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIAL 517

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           L  ++  G+ P+   YN L++G    GR   A+++ + +   G   DV +Y  +IN  CK
Sbjct: 518 LVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTY--IINELCK 575



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 131/268 (48%), Gaps = 8/268 (2%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           +M+      P   ++ IL          D   +LF  +   GL PD+++YNILI  +CK 
Sbjct: 307 HMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKF 366

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP--DVF 123
            RV     +L  +      P+ +T+ S++ GLC    I++A  L  ++  + C+P  DV 
Sbjct: 367 ERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMH-YCCQPPPDVT 425

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY  L+  LCR      A+  F+ +      F     P+  +Y+ +  G CK   +D+A 
Sbjct: 426 TYNILLESLCRIECVEKAIAFFKHLI-----FERSFAPNVWSYNILISGCCKNRRLDEAI 480

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF  M  +N+ PD+VTY  L+         ++A  L ++++DQG+ PN+ T+N+++N L
Sbjct: 481 NLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGL 540

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVY 271
            K G+   A ++   +   G  PD   Y
Sbjct: 541 HKGGRPKTAQKISLYLSIRGYHPDVKTY 568



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 3/177 (1%)

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
           +   CK   +D A  LF +M D +  P +V +T ++        +  A  L+  M  +GV
Sbjct: 26  SQSTCKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGV 85

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            P  VTFN+++N  C  G+MD A  ++  +++ G RP+   + TLM GFC+  ++  A  
Sbjct: 86  VPFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALY 145

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNK--EIEGALSLYSEMLSKG-IRPTVVTYNT 343
           ++  M +     D   YG LING CK+K  +   A+ L  +M  +  ++P ++ YNT
Sbjct: 146 IYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNT 202



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 2/133 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F +++      P V S+NIL     KN+  D  ++LF  +    L PD+ TYNIL++   
Sbjct: 447 FKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALF 506

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
              ++     +L +I+    +P+  T+  LI GL    R   A  +   L   G  PDV 
Sbjct: 507 NGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVK 566

Query: 124 TYTTLINGLCRTG 136
           TY  +IN LC+ G
Sbjct: 567 TY--IINELCKGG 577


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 189/340 (55%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           +  M+ M P P  V  FN+LF  +AK KHY T +SL K ++ IG+ P ++T NI+INC C
Sbjct: 71  YHKMVTMKPFPC-VKDFNLLFSIVAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLC 129

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++     GF VLG + +    P  VTF +++ GLC E  + +A      L+  G + D +
Sbjct: 130 RLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSY 189

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           T   + NGLC+ GH+  AL+  ++M   N      C  D   YS + DGLCK+G V +A 
Sbjct: 190 TCGAITNGLCKVGHSSAALSYLKKMEEKN------CNLDVTAYSGVVDGLCKDGMVFEAL 243

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I PD+ TY  LI G C  + W EA  L   MM +G+ P+V TFNVI    
Sbjct: 244 NLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRF 303

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G +  A  +   M+ +G+  D   Y +++   C+  ++  A E+F  M S GC+ ++
Sbjct: 304 FKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNI 363

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  LI+G+C+ K +  A+    EM++ G+ P VVT++T
Sbjct: 364 VTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWST 403



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 154/307 (50%), Gaps = 6/307 (1%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            L+LF ++   G+ PDL+TYN LI+  C   R      +L  ++R    PD  TF  +  
Sbjct: 242 ALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAG 301

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
                  I  A ++F+ +   G + DV TYT++I   C       A+ +F+ M +     
Sbjct: 302 RFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKG--- 358

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
              C P+ +TY+++  G C+   ++KA     +M +  ++P+VVT+++LI G C A    
Sbjct: 359 ---CLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPV 415

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
            AK LF+ M   G  PN+ T  +I++ L K     EA  L   + ++    +  +YN ++
Sbjct: 416 AAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIIL 475

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           DG C +G++N A ELF  + S G   DV +Y I+I G CK   ++ A  L  +M   G  
Sbjct: 476 DGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCP 535

Query: 336 PTVVTYN 342
           P   TYN
Sbjct: 536 PNECTYN 542



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 162/326 (49%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L     +     L   +   G+ PD+ T+N++   F K G +S    +
Sbjct: 256 PDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSI 315

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++      D VT+TS+I   C  +++ +A  +F  + + GC P++ TYT+LI+G C 
Sbjct: 316 FSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCE 375

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T +   A+    EM N NG       P+ +T+ST+  G+CK G    AKELFL M     
Sbjct: 376 TKNMNKAMYFLGEMVN-NG-----LDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQ 429

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ T   ++ G    N  +EA  LF E+       N++ +N+I++ +C +GK+++A  
Sbjct: 430 LPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALE 489

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   GV+ D   YN ++ G C  G ++ A++L + ME NGC  +  +Y + + G  
Sbjct: 490 LFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGLL 549

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           +  +I  +      M  KG +    T
Sbjct: 550 RRYQISKSTKYLMFMKDKGFQADATT 575



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 36/229 (15%)

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           ++ +  F  V   D  + +   D +     VD A + + KM      P V  +  L    
Sbjct: 35  SHSSSTFSFVSDSDT-SRAQFLDSMRNAKSVDVALDFYHKMVTMKPFPCVKDFNLLFSIV 93

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
                +  A  L   M   GV+P V T N+++N LC+         +L LM +IGV P  
Sbjct: 94  AKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSI 153

Query: 269 SVYNTLMDGFCLTGRVNRA-------KEL----------------------------FVS 293
             +NT+++G C+ G V +A       K++                               
Sbjct: 154 VTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKK 213

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ME   C  DV +Y  +++G CK+  +  AL+L+S+M  KGI+P + TYN
Sbjct: 214 MEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYN 262



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 60/128 (46%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++  H   P + +  I+   L K   +   +SLF+ L  +    ++  YNI+++  C  G
Sbjct: 423 VMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSG 482

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +++    +   +       D VT+  +IKGLC E  + +A  L  K+   GC P+  TY 
Sbjct: 483 KLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYN 542

Query: 127 TLINGLCR 134
             + GL R
Sbjct: 543 VFVQGLLR 550


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 202/371 (54%), Gaps = 35/371 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+R  P P  V  FN L G + + +  D V+SL++++    +  D+Y++NILI CF
Sbjct: 64  LFSDMVRSRPLPS-VIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCF 122

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G+I +  F PD VTF++L+ GLC E R+ EA  LF ++    C+P+V
Sbjct: 123 CSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNV 178

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVVC------------------ 159
            T+TTL+NGLCR G  + A+ L + M     +     +G +                   
Sbjct: 179 VTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRK 238

Query: 160 -------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                  KP+ + YS I DGL K+G    A  L+ +M+++ I PD+ TY  +I GFC + 
Sbjct: 239 MEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSG 298

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W+EA+ L  EM+++ + PNVVT++ ++N   K  K  EA  L + M+  G+ P+   YN
Sbjct: 299 RWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYN 358

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++DGFC   R++ A+ +F  M + GC  DVF++  LI+GYC  K I+    L  EM   
Sbjct: 359 SMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTET 418

Query: 333 GIRPTVVTYNT 343
           G+     TYNT
Sbjct: 419 GLVADTTTYNT 429



 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 173/348 (49%), Gaps = 17/348 (4%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M  M    P V  ++ +   L K+  +    +L+  +   G+FPDL+TYN +I+ FC  G
Sbjct: 239 MEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSG 298

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R S    +L  +L     P+ VT+++LI     E +  EA  L+ ++   G  P+  TY 
Sbjct: 299 RWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYN 358

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           ++I+G C+      A ++F  MA         C PD  T++T+ DG C    +D   EL 
Sbjct: 359 SMIDGFCKQNRLDAAEHMFYVMATKG------CSPDVFTFNTLIDGYCGAKRIDDGTELL 412

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M +  +  D  TY +LI GFC   D N A  L  +M+  GV P++VT N +++ LC N
Sbjct: 413 HEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN 472

Query: 247 GKMDEASRLLELMIQI-----------GVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           GK+ +A  + + M +            GV PD   YN L+ G    G+   A+EL+  M 
Sbjct: 473 GKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMP 532

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G + +  +Y  +ING CK   ++ A  ++  M SK   P VVT+NT
Sbjct: 533 HRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNT 580



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 172/340 (50%), Gaps = 17/340 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L     K + +     L+  +   G+ P+  TYN +I+ FCK  R+     +
Sbjct: 317 PNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHM 376

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +PD  TF +LI G C   RI +   L  ++   G   D  TY TLI+G C 
Sbjct: 377 FYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCL 436

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
            G    AL+L ++M +       VC PD +T +T+ DGLC  G +  A E+F  M+    
Sbjct: 437 VGDLNAALDLSQQMISSG-----VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 490

Query: 194 ----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                     + PDV TY  LI G      + EA+ L+ EM  +G+ PN +T++ ++N L
Sbjct: 491 DLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGL 550

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++DEA+++ + M      PD   +NTL+ G+C  GRV+   ELF  M   G + D 
Sbjct: 551 CKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADA 610

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  LI+G+ K   I GAL ++ EM+S G+ P  +T  +
Sbjct: 611 ITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRS 650



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 159/320 (49%), Gaps = 5/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K    D    +F  + + G  PD++T+N LI+ +C   R+  G  +
Sbjct: 352 PNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTEL 411

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +    D  T+ +LI G C    +  A  L  ++ + G  PD+ T  TL++GLC 
Sbjct: 412 LHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCD 471

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G    AL +F+ M     +          +PD  TY+ +  GL  EG   +A+EL+ +M
Sbjct: 472 NGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEM 531

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I P+ +TY+S+I G C  +  +EA  +F  M  +   P+VVTFN +++  CK G++
Sbjct: 532 PHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRV 591

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+   L   M + G+  DA  Y TL+ GF   G +N A ++F  M S+G   D  +   +
Sbjct: 592 DDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSM 651

Query: 310 INGYCKNKEIEGALSLYSEM 329
           +      +E++ A+++  ++
Sbjct: 652 LTVLWSKEELKRAVAMLEDL 671



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 152/301 (50%), Gaps = 17/301 (5%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P V +FN L       K  D    L   +   GL  D  TYN LI+ FC +
Sbjct: 378 YVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLV 437

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL----------RA 115
           G ++    +  +++ S   PD VT  +L+ GLC   ++ +A  +F  +          R 
Sbjct: 438 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRP 497

Query: 116 F-GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
           F G +PDV TY  LI+GL   G  + A  L++EM +     G+V  P+ ITYS++ +GLC
Sbjct: 498 FNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHR----GIV--PNTITYSSMINGLC 551

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  +D+A ++F  M  ++ +PDVVT+ +L+ G+C A   ++   LF EM  +G+  + +
Sbjct: 552 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAI 611

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+  +++   K G ++ A  + + MI  GV PD     +++        + RA  +   +
Sbjct: 612 TYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDL 671

Query: 295 E 295
           +
Sbjct: 672 Q 672



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 39/175 (22%)

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM---- 259
           L  GF       +A  LF +M+     P+V+ FN +M  + +  + D    L + M    
Sbjct: 48  LRSGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQ 107

Query: 260 -------------------------------IQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
                                           ++G +PD   ++TL+ G C+  RV+ A 
Sbjct: 108 IPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEAL 167

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +LF  M    C  +V ++  L+NG C+   +  A++L   M+  G++P  +TY T
Sbjct: 168 DLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 218


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 192/342 (56%), Gaps = 8/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINC 61
           +F  M  M P  P V  F +L G + + KHY T +SL K + +S+G+  D  T NI+INC
Sbjct: 63  LFQGMASMKP-LPSVKDFTLLLGVIVRLKHYTTAISLVKHIFSSLGIEADTITLNIVINC 121

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C++  V+ GF VLG + +    P  +T T+LI GLC +  + +A  L   +       D
Sbjct: 122 LCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVDHMEKMRYPLD 181

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V+TY  LINGLC+TG T+ A+    +M   N       KP+ + YSTI DGLCK+G V +
Sbjct: 182 VYTYGVLINGLCKTGDTLAAVEWLRKMEERN------WKPNVVVYSTIMDGLCKDGLVSE 235

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L  +M  + + P++VTY  LI+G C    W E   L  EM+  G++ ++ T N++++
Sbjct: 236 ALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVD 295

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK GK+ +A  ++  MI  G  PD   YN+L+  +CL  ++N A  +F  M S GC+ 
Sbjct: 296 AFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLP 355

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D+  +  LI+G+CK+K I   + L  EM   G  P VVT+ T
Sbjct: 356 DIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTT 397



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 161/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+      L+L   ++  G+ P+L TY  LI   C  GR      +
Sbjct: 215 PNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSL 274

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++     D  T   L+   C E ++M+A ++   +   G  PDVFTY +LI+  C 
Sbjct: 275 LDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCL 334

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +F  M +        C PD + ++++  G CK+  ++K   L  +M     
Sbjct: 335 QNKMNEAMRVFHLMVSRG------CLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGF 388

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVT+T+LI GFC A     AK LF+ M   G  PN+ T  VI++ LCK   + EA  
Sbjct: 389 VPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVS 448

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M +  +  +  +Y+ L+DG C  G++N A ELF S+   G   +V++Y I+I G C
Sbjct: 449 LAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLC 508

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ A  L   M   G  P   TYN
Sbjct: 509 KQGSLDKAEDLLINMEENGCLPDNCTYN 536



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 169/326 (51%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L   L     +    SL   +  +G+  DL T NIL++ FCK G+V     V
Sbjct: 250 PNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSV 309

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +G ++ +   PD  T+ SLI   C ++++ EA  +F  + + GC PD+  +T+LI+G C+
Sbjct: 310 IGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCK 369

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +    ++L EEMA    + G V  PD +T++T+  G C+ G    AKELFL M     
Sbjct: 370 DKNINKVMHLLEEMA----KMGFV--PDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQ 423

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ T   ++ G C  N  +EA  L   M    +  N+V ++++++ +C  GK++ A  
Sbjct: 424 VPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWE 483

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++ +   Y  ++ G C  G +++A++L ++ME NGC+ D  +Y + + G  
Sbjct: 484 LFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLL 543

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
             KEI  ++   + M  KG      T
Sbjct: 544 TKKEIARSIKYLTIMRDKGFSVDAAT 569



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 143/299 (47%), Gaps = 6/299 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           + NIL     K        S+   +   G  PD++TYN LI+ +C   +++    V   +
Sbjct: 289 TLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLM 348

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     PD V FTSLI G C +  I +   L  ++   G  PDV T+TTLI G C+ G  
Sbjct: 349 VSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRP 408

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
           + A  LF  M     ++G V  P+  T + I DGLCK   + +A  L   M+  N++ ++
Sbjct: 409 LAAKELFLNMH----KYGQV--PNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNI 462

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V Y+ L+ G C A   N A  LF  +  +G+Q NV T+ +++  LCK G +D+A  LL  
Sbjct: 463 VIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLIN 522

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
           M + G  PD   YN  + G      + R+ +    M   G   D  +  I IN    N+
Sbjct: 523 MEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTEITINYLSTNE 581



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 131/277 (47%), Gaps = 6/277 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L          +  + +F  + S G  PD+  +  LI+ +CK   ++    +
Sbjct: 320 PDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHL 379

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +  F PD VT+T+LI G C   R + A  LF  +  +G  P++ T   +++GLC+
Sbjct: 380 LEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCK 439

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A++L E M   N +  +V       YS + DG+C  G ++ A ELF  +  + +
Sbjct: 440 GNLLSEAVSLAEAMEKSNLDLNIV------IYSILLDGMCSAGKLNAAWELFSSLPGKGL 493

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +V TYT +I+G C     ++A+ L I M + G  P+  T+NV +  L    ++  + +
Sbjct: 494 QINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIK 553

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
            L +M   G   DA+     ++         R +E F
Sbjct: 554 YLTIMRDKGFSVDAATTEITINYLSTNEGDTRIREFF 590



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 226 DQGVQPNVVTFNVIMNELCKNGK---MDEASRLLELMIQIGVRPDASVYNTLMDGFCL-- 280
           D     N   F + M  LCK+GK   +DEA  L + M  +   P    + TL+ G  +  
Sbjct: 31  DTDSHSNGTQFLISMRNLCKSGKVKNIDEALDLFQGMASMKPLPSVKDF-TLLLGVIVRL 89

Query: 281 ---TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
              T  ++  K +F S+   G   D  +  I+IN  C+ K +    S+   M   G+ PT
Sbjct: 90  KHYTTAISLVKHIFSSL---GIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPT 146

Query: 338 VVT 340
           V+T
Sbjct: 147 VMT 149


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 204/371 (54%), Gaps = 31/371 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  MLR  P  P V  F  L G + + +  D V+SL++++    +  D+Y++NILI CF
Sbjct: 66  LFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCF 124

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G+I +    PD VTFT+L+ GLC E R+ EA  LF ++    C+P+V
Sbjct: 125 CSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNV 184

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVV----CK------------- 160
            T+TTL+NGLCR G  + A+ L + M     +     +G +    CK             
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRK 244

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   P+ + YS I D LCK+G    A+ LF +M+++ I PD+ TY S+I GFC + 
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W++A+ L  EM+++ + P+VVT+N ++N   K GK  EA  L + M+  G+ P+   Y+
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYS 364

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++DGFC   R++ A+ +F  M + GC  ++ ++  LI+GYC  K I+  + L  EM   
Sbjct: 365 SMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTET 424

Query: 333 GIRPTVVTYNT 343
           G+     TYNT
Sbjct: 425 GLVADTTTYNT 435



 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 182/355 (51%), Gaps = 30/355 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           SFNIL  C          LS F ++  +GL PD+ T+  L++  C   RVS    +  ++
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQM 175

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
             +   P+ VTFT+L+ GLC E RI+EA AL  ++   G +P   TY T+++G+C+ G T
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 139 IVALNLFEEMANGN----------GEFGVVCK--------------------PDAITYST 168
           + ALNL  +M   +               +CK                    PD  TY++
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +  G C  G    A++L  +M +  I+PDVVTY +LI  F     + EA+ L+ EM+ +G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           + PN +T++ +++  CK  ++D A  +  LM   G  P+   +NTL+DG+C   R++   
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           EL   M   G + D  +Y  LI+G+    ++  AL L  EM+S G+ P +VT +T
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 174/375 (46%), Gaps = 52/375 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+  +    +LF  +   G+FPDL+TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L    +PD VT+ +LI     E +  EA  L+ ++   G  P+  TY+++I+G C+
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  MA         C P+ IT++T+ DG C    +D   EL  +M +  +
Sbjct: 373 QNRLDAAEHMFYLMATKG------CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD---- 250
             D  TY +LI GF    D N A  L  EM+  G+ P++VT + +++ LC NGK+     
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 251 ------------------------------------------EASRLLELMIQIGVRPDA 268
                                                     EA  L E M   G+ PD 
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y++++DG C   R++ A ++F SM S     +V ++  LINGYCK   ++  L L+ E
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCE 606

Query: 329 MLSKGIRPTVVTYNT 343
           M  +GI    +TY T
Sbjct: 607 MGRRGIVANAITYIT 621



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 173/340 (50%), Gaps = 18/340 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L +       ++L  R+   GL P   TY  +++  CK G       +
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 75  LGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L ++   S   P+ V ++++I  LC + R  +A  LFT+++  G  PD+FTY ++I G C
Sbjct: 242 LRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            +G    A  L +EM            PD +TY+ + +   KEG   +A+EL+ +M    
Sbjct: 302 SSGRWSDAEQLLQEMLERK------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I P+ +TY+S+I GFC  N  + A+ +F  M  +G  PN++TFN +++  C   ++D+  
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL  M + G+  D + YNTL+ GF L G +N A +L   M S+G   D+ +   L++G 
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475

Query: 314 CKNKEIEGALSLYSEMLSK-----------GIRPTVVTYN 342
           C N +++ AL ++  M              G+ P V TYN
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 168/337 (49%), Gaps = 17/337 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+     +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P+ +TF +LI G C   RI +   L  ++   G   D  TY TLI+G   
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
            G    AL+L +EM +       +C PD +T  T+ DGLC  G +  A E+F  M+    
Sbjct: 443 VGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 194 ----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                     + PDV TY  LI G      + EA+ L+ EM  +G+ P+ +T++ +++ L
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++DEA+++ + M      P+   + TL++G+C  GRV+   ELF  M   G + + 
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +Y  LI G+ K   I GAL ++ EM+S G+ P  +T
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 5/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +     K    D    +F  + + G  P+L T+N LI+ +C   R+  G  +
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +    D  T+ +LI G      +  A  L  ++ + G  PD+ T  TL++GLC 
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G    AL +F+ M     +          +PD  TY+ +  GL  EG   +A+EL+ +M
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I PD +TY+S+I G C  +  +EA  +F  M  +   PNVVTF  ++N  CK G++
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 597

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+   L   M + G+  +A  Y TL+ GF   G +N A ++F  M S+G   D  +   +
Sbjct: 598 DDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 310 INGYCKNKEIEGALSLYSEM 329
           + G    +E++ A+++  ++
Sbjct: 658 LTGLWSKEELKRAVAMLEKL 677



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 151/301 (50%), Gaps = 17/301 (5%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P + +FN L       K  D  + L   +   GL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--------- 116
           G ++    +L  ++ S   PD VT  +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 117 --GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
             G +PDV TY  LI+GL   G  + A  L+EEM +     G+V  PD ITYS++ DGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  +D+A ++F  M  ++ +P+VVT+T+LI G+C A   ++   LF EM  +G+  N +
Sbjct: 558 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 617

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+  ++    K G ++ A  + + MI  GV PD      ++ G      + RA  +   +
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677

Query: 295 E 295
           +
Sbjct: 678 Q 678



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 64/140 (45%)

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L  GF       +A  LF +M+     P+VV F  +M  + +  + D    L + M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           +R D   +N L+  FC   ++  A   F  +   G   DV ++  L++G C    +  AL
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           +L+ +M     RP VVT+ T
Sbjct: 170 NLFHQMFETTCRPNVVTFTT 189


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 203/372 (54%), Gaps = 42/372 (11%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M++  P  P +  FN L   +AK K +D V+SL +++  +G+  +LYTYNILINCFC+  
Sbjct: 1   MVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRS 59

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++S    +LG++++  + P  VT +SL+ G C   RI +A AL  ++   G +PD  T+T
Sbjct: 60  QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFT 119

Query: 127 TLI-----------------------------------NGLCRTGHTIVALNLFEEMANG 151
           TLI                                   NGLC+ G   +A NL  +M   
Sbjct: 120 TLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 179

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
             E       D + ++TI D LCK   VD A  LF +M+ + I P+VVTY+SLI   C  
Sbjct: 180 KIE------ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSY 233

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
             W++A  L  +M+++ + PN+VTFN +++   K GK  EA +L + MI+  + PD   Y
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 293

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N+L++GFC+  R+++AK++F  M S  C  D+ +Y  LI G+CK+K +E    L+ EM  
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 353

Query: 332 KGIRPTVVTYNT 343
           +G+    VTY T
Sbjct: 354 RGLVGDTVTYTT 365



 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 179/327 (54%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  FN +   L K +H D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +L 
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VTF +LI     E + +EA  L   +      PD+FTY +LING C   
Sbjct: 245 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHD 304

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +FE M + +      C PD  TY+T+  G CK   V+   ELF +M    +  
Sbjct: 305 RLDKAKQMFEFMVSKD------CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 358

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTYT+LI+G  +  D + A+ +F +M+  GV P+++T++++++ LC NGK+++A  + 
Sbjct: 359 DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF 418

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M +  ++ D  +Y T+++G C  G+V+   +LF S+   G   +V +Y  +I+G C  
Sbjct: 419 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 478

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + ++ A +L  +M   G  P   TYNT
Sbjct: 479 RLLQEAYALLKKMKEDGPLPDSGTYNT 505



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 182/371 (49%), Gaps = 30/371 (8%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M+ M   P  +    ++ G    NK  + V +L  R+   G  P+L TY +++N 
Sbjct: 101 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV-ALVDRMVQRGCQPNLVTYGVVVNG 159

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +   F +L ++  +    D V F ++I  LC    + +A  LF ++   G +P+
Sbjct: 160 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 219

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGN------------------GEFGVVCK--- 160
           V TY++LI+ LC  G    A  L  +M                      G+F    K   
Sbjct: 220 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHD 279

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   PD  TY+++ +G C    +DKAK++F  M  ++  PD+ TY +LI+GFC + 
Sbjct: 280 DMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSK 339

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              +   LF EM  +G+  + VT+  ++  L  +G  D A ++ + M+  GV PD   Y+
Sbjct: 340 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 399

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+DG C  G++ +A E+F  M+ +    D++ Y  +I G CK  +++    L+  +  K
Sbjct: 400 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 459

Query: 333 GIRPTVVTYNT 343
           G++P VVTYNT
Sbjct: 460 GVKPNVVTYNT 470



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/298 (33%), Positives = 150/298 (50%), Gaps = 8/298 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L     K   +     L   +    + PD++TYN LIN FC   R+     +
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312

Query: 75  LG-RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
               + + CF PD  T+ +LIKG C   R+ +   LF ++   G   D  TYTTLI GL 
Sbjct: 313 FEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 371

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A  +F++M +     GV   PD +TYS + DGLC  G ++KA E+F  M+   
Sbjct: 372 HDGDCDNAQKVFKQMVSD----GV--PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I  D+  YT++I G C A   ++   LF  +  +GV+PNVVT+N +++ LC    + EA 
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 485

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
            LL+ M + G  PD+  YNTL+      G    + EL   M S   + D  + G++ N
Sbjct: 486 ALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVAN 543



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 118/267 (44%), Gaps = 30/267 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L      +   D    +F+ + S   FPDL TYN LI  FCK  RV  G  +
Sbjct: 288 PDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 347

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       D VT+T+LI+GL  +     A  +F ++ + G  PD+ TY+ L++GLC 
Sbjct: 348 FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 407

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----------------------------CKPDAIT 165
            G    AL +F+ M     +  +                               KP+ +T
Sbjct: 408 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 467

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+  GLC +  + +A  L  KMK++   PD  TY +LIR      D   +  L  EM 
Sbjct: 468 YNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMR 527

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEA 252
                 +  T  ++ N L  +G++D++
Sbjct: 528 SCRFVGDASTIGLVANML-HDGRLDKS 553



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +++IL   L  N   +  L +F  +    +  D+Y Y  +I   CK G+V  G+ 
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 451

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      P+ VT+ ++I GLC++  + EA AL  K++  G  PD  TY TLI    
Sbjct: 452 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHL 511

Query: 134 RTGHTIVALNLFEEM 148
           R G    +  L  EM
Sbjct: 512 RDGDKAASAELIREM 526


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 123/296 (41%), Positives = 184/296 (62%), Gaps = 8/296 (2%)

Query: 50  PDLYTYNILINCFCK--MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA 107
           PD+YT  ILINCFC          F VLG + +    P+ VTF++L+ GL ++++I++A 
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV 67

Query: 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
            LF ++   G +PDV TY+T+INGLC+ G T +A+ L ++M          CKP+ + YS
Sbjct: 68  KLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKG------CKPNVVVYS 121

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           TI D LCK+  + +A E   +M +  I+P+VVTY+S++ GFC     NEA  LF +M+++
Sbjct: 122 TIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVER 181

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
            V P+ VTFN++++ L K G + EA  + E MI+ GV P+ + YN LMDG+C   +++ A
Sbjct: 182 NVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEA 241

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++LF  M   GC   V SY ILI G+CK+  I+ A  L +EM  K + P  VTY+T
Sbjct: 242 QKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYST 297



 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 171/330 (51%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCL--AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P V +  IL  C   + + H+    S+   +  +GL P+  T++ L+N      ++    
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV 67

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   +++  + PD +T++++I GLC       A  L  K+   GCKP+V  Y+T+I+ L
Sbjct: 68  KLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSL 127

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+      A+    EM N          P+ +TYS+I  G C  G  ++A  LF +M + 
Sbjct: 128 CKDKLITEAMEFLSEMVNRG------ISPNVVTYSSILHGFCNLGRSNEATSLFKQMVER 181

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N+ PD VT+  L+ G        EA+C+F  M+++GV+PNV T+N +M+  C   +MDEA
Sbjct: 182 NVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEA 241

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +L  +M++ G  P    YN L+ G C +GR++ AK L   M       D  +Y  L+ G
Sbjct: 242 QKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKG 301

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +C++   + A  L  EM S G+ P ++TY+
Sbjct: 302 FCQDGRPQDAQKLLEEMRSYGLLPDLMTYS 331



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 193/376 (51%), Gaps = 42/376 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +   M ++   P  V    +L G  +K K  D V  LF  +  +G  PD+ TY+ +IN
Sbjct: 32  FSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV-KLFDEMVKMGYEPDVITYSTIIN 90

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CKMG  +    +L ++      P+ V ++++I  LC +  I EA    +++   G  P
Sbjct: 91  GLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISP 150

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V TY+++++G C  G +  A +LF++M   N        PD +T++ + DGL KEG + 
Sbjct: 151 NVVTYSSILHGFCNLGRSNEATSLFKQMVERN------VMPDTVTFNILVDGLSKEGMIL 204

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A+ +F  M ++ + P+V TY +L+ G+C  +  +EA+ LF  M+ +G  P+V ++N+++
Sbjct: 205 EAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILI 264

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
              CK+G++DEA  LL  M    + PD   Y+TLM GFC  GR   A++L   M S G +
Sbjct: 265 KGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLL 324

Query: 301 RDVFSYGILINGYCKNK-----------------------------------EIEGALSL 325
            D+ +Y I+++G CK                                     ++E A  L
Sbjct: 325 PDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAAREL 384

Query: 326 YSEMLSKGIRPTVVTY 341
           +S +  KGI+P VVTY
Sbjct: 385 FSNLFVKGIQPDVVTY 400



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 171/328 (52%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+K     +     + + G+ P++ TY+ +++ FC +GR +    +
Sbjct: 115 PNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSL 174

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     PD VTF  L+ GL  E  I+EA  +F  +   G +P+V TY  L++G C 
Sbjct: 175 FKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCS 234

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF  M          C P   +Y+ +  G CK G +D+AK L  +M  + +
Sbjct: 235 QSQMDEAQKLFNIMVRKG------CAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKAL 288

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY++L++GFC      +A+ L  EM   G+ P+++T++++++ LCK G +DEA  
Sbjct: 289 TPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFE 348

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M +  + P+  +Y  L+ G C  G++  A+ELF ++   G   DV +Y ++I+G  
Sbjct: 349 LLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLL 408

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K      A  L+ +M   G  P   TYN
Sbjct: 409 KGGLSNEACELFRDMAVHGCLPNSCTYN 436



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 163/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +          +   SLFK++    + PD  T+NIL++   K G +     V
Sbjct: 150 PNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCV 209

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+  T+ +L+ G C++S++ EA  LF  +   GC P V +Y  LI G C+
Sbjct: 210 FETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCK 269

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  L  EM++          PD +TYST+  G C++G    A++L  +M+   +
Sbjct: 270 SGRIDEAKGLLAEMSHK------ALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL 323

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY+ ++ G C     +EA  L   M +  ++PN+  + +++  +C  GK++ A  
Sbjct: 324 LPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARE 383

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++PD   Y  ++ G    G  N A ELF  M  +GC+ +  +Y ++I G+ 
Sbjct: 384 LFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFL 443

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +N +   A  L  EM+ +G      T+ 
Sbjct: 444 RNGDTSNAGRLIEEMVGRGFSADSSTFQ 471



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 139/275 (50%), Gaps = 7/275 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C+F+ M+      P V ++N L          D    LF  +   G  P + +YNILI  
Sbjct: 208 CVFETMIE-KGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKG 266

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK GR+     +L  +     TPD VT+++L+KG C + R  +A  L  ++R++G  PD
Sbjct: 267 HCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPD 326

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY+ +++GLC+ GH   A  L + M     E      P+   Y+ +  G+C  G ++ 
Sbjct: 327 LMTYSIVLDGLCKQGHLDEAFELLKAMQESKIE------PNIFIYTILIQGMCNFGKLEA 380

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+ELF  +  + I PDVVTYT +I G       NEA  LF +M   G  PN  T+NVI+ 
Sbjct: 381 ARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQ 440

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
              +NG    A RL+E M+  G   D+S +  L D
Sbjct: 441 GFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSD 475



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 151/295 (51%), Gaps = 6/295 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FNIL   L+K         +F+ +   G+ P++ TYN L++ +C   ++     +
Sbjct: 185 PDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKL 244

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    P   ++  LIKG C   RI EA  L  ++      PD  TY+TL+ G C+
Sbjct: 245 FNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQ 304

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L EEM +    +G++  PD +TYS + DGLCK+G +D+A EL   M++  I
Sbjct: 305 DGRPQDAQKLLEEMRS----YGLL--PDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKI 358

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++  YT LI+G C       A+ LF  +  +G+QP+VVT+ V+++ L K G  +EA  
Sbjct: 359 EPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACE 418

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           L   M   G  P++  YN ++ GF   G  + A  L   M   G   D  ++ +L
Sbjct: 419 LFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQML 473



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 2/157 (1%)

Query: 189 MKDENINPDVVTYTSLIRGFCYAN--DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
           M   NI PDV T T LI  FC++N   ++ A  +   M   G+QPN VTF+ ++N L   
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            K+ +A +L + M+++G  PD   Y+T+++G C  G    A +L   ME  GC  +V  Y
Sbjct: 61  AKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVY 120

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +I+  CK+K I  A+   SEM+++GI P VVTY++
Sbjct: 121 STIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSS 157


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 205/376 (54%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P  P +  FN L   +AK K +D V+SL +++  +G+  +LYTYNILINCF
Sbjct: 72  LFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCF 130

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S    +LG++++  + P  VT +SL+ G C   RI +A AL  ++   G +PD 
Sbjct: 131 CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190

Query: 123 FTYTTLI-----------------------------------NGLCRTGHTIVALNLFEE 147
            T+TTLI                                   NGLC+ G   +A NL  +
Sbjct: 191 ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNK 250

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M     E  VV       YST+ D LCK    D A  LF +M+++ + P+V+TY+SLI  
Sbjct: 251 MEAAKIEANVV------IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++A  L  +M+++ + PNVVTFN +++   K GK+ EA +L + MI+  + PD
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 364

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y++L++GFC+  R++ AK +F  M S  C  +V +Y  LING+CK K I+  + L+ 
Sbjct: 365 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFR 424

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  +G+    VTY T
Sbjct: 425 EMSQRGLVGNTVTYTT 440



 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 178/320 (55%), Gaps = 6/320 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  ++ +   L K +H D  L+LF  + + G+ P++ TY+ LI+C C   R S    +L 
Sbjct: 260 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLS 319

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VTF +LI     E +++EA  L+ ++      PD+FTY++LING C   
Sbjct: 320 DMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 379

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A ++FE M + +      C P+ +TY+T+ +G CK   +D+  ELF +M    +  
Sbjct: 380 RLDEAKHMFELMISKD------CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVG 433

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTYT+LI GF  A D + A+ +F +M+  GV PN++T+N +++ LCKNGK+++A  + 
Sbjct: 434 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 493

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E + +  + P    YN +++G C  G+V    +LF S+   G   DV  Y  +I+G+C+ 
Sbjct: 494 EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRK 553

Query: 317 KEIEGALSLYSEMLSKGIRP 336
              E A +L+ +M   G  P
Sbjct: 554 GLKEEADALFRKMREDGPLP 573



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 182/377 (48%), Gaps = 42/377 (11%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M+ M   P  +    ++ G    NK  + V +L  R+   G  P+L TY +++N 
Sbjct: 176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV-ALVDRMVQRGCQPNLVTYGVVVNG 234

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +   F +L ++  +    + V ++++I  LC      +A  LFT++   G +P+
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 294

Query: 122 VFTYTTLINGLC-----------------------------------RTGHTIVALNLFE 146
           V TY++LI+ LC                                   + G  + A  L++
Sbjct: 295 VITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYD 354

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM   +        PD  TYS++ +G C    +D+AK +F  M  ++  P+VVTY +LI 
Sbjct: 355 EMIKRS------IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIN 408

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           GFC A   +E   LF EM  +G+  N VT+  +++   +    D A  + + M+  GV P
Sbjct: 409 GFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHP 468

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           +   YNTL+DG C  G++ +A  +F  ++ +     +++Y I+I G CK  ++E    L+
Sbjct: 469 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 528

Query: 327 SEMLSKGIRPTVVTYNT 343
             +  KG++P V+ YNT
Sbjct: 529 CSLSLKGVKPDVIIYNT 545



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 134/283 (47%), Gaps = 29/283 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L  CL   + +     L   +    + P++ T+N LI+ F K G++     +
Sbjct: 293 PNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKL 352

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    PD  T++SLI G C   R+ EA  +F  + +  C P+V TY TLING C+
Sbjct: 353 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCK 412

Query: 135 TGHTIVALNLFEEMAN----GN---------GEFGVV----------------CKPDAIT 165
                  + LF EM+     GN         G F                     P+ +T
Sbjct: 413 AKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMT 472

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+ DGLCK G ++KA  +F  ++   + P + TY  +I G C A    +   LF  + 
Sbjct: 473 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLS 532

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
            +GV+P+V+ +N +++  C+ G  +EA  L   M + G  PD+
Sbjct: 533 LKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDS 575



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 35/200 (17%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A  LF  M      P +  +  L+        ++    L  +M   G+  N+ T+N+
Sbjct: 66  LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNI 125

Query: 239 IMNELCKN----------GKM-------------------------DEASRLLELMIQIG 263
           ++N  C+           GKM                          +A  L++ M+++G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            RPD   + TL+ G  L  + + A  L   M   GC  ++ +YG+++NG CK  +I+ A 
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAF 245

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           +L ++M +  I   VV Y+T
Sbjct: 246 NLLNKMEAAKIEANVVIYST 265



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  ++R   ++   ++A  LF  M+     P++  FN +++ + K  K D    L E M 
Sbjct: 53  YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ 112

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           ++G+  +   YN L++ FC   +++ A  L   M   G    + +   L+NGYC  K I 
Sbjct: 113 RLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A++L  +M+  G RP  +T+ T
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTT 195


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 138/342 (40%), Positives = 188/342 (54%), Gaps = 10/342 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M P PPP   FN +   L KNK Y TV+SLFK+    G+ PDL T +ILINCFC
Sbjct: 46  FNLMLLMRP-PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFC 104

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
               ++  F V   IL+  F PDA+T  +LIKGLC    I +      ++ A G + D  
Sbjct: 105 HQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQV 164

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+ G T     L  ++       G   KPD + Y+TI + LCK   +  A 
Sbjct: 165 SYGTLINGLCKAGETKAVARLLRKLE------GHSVKPDVVMYNTIINSLCKNKLLGDAC 218

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +++ +M  + I+PDVVTYT+LI GFC      EA  L  EM  + + P+V TF+V+++ L
Sbjct: 219 DVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDAL 278

Query: 244 CKNGK---MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
            K GK   +DEA  L E M    + PD   YN+L+DG C    + RA  L   M+ +G  
Sbjct: 279 GKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQ 338

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            DV+SY IL++G CK   +E A   +  +L KG    V  YN
Sbjct: 339 PDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYN 380



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 159/358 (44%), Gaps = 44/358 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +C+ +IL  C     H     S+F  +   G  PD  T N LI   C  G +      
Sbjct: 91  PDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYF 150

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF------------------ 116
             +++   F  D V++ +LI GLC        A L  KL                     
Sbjct: 151 HDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCK 210

Query: 117 -----------------GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                            G  PDV TYTTLI+G C  G    A +L  EM   N       
Sbjct: 211 NKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKN------I 264

Query: 160 KPDAITYSTITDGLCKEG---FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
            PD  T+S + D L KEG    VD+A  LF +MK +N+ PD+VTY SLI G C  +    
Sbjct: 265 NPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLER 324

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  L  EM + G+QP+V ++ ++++ LCK G+++ A    + ++  G   +   YN +++
Sbjct: 325 AIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMIN 384

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           G C  G    A +L   ME  GCM +  ++  +I    +  E + A  +  EM+++G+
Sbjct: 385 GLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIARGL 442



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 146/287 (50%), Gaps = 9/287 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K      V  L ++L    + PD+  YN +IN  CK   +     V   +
Sbjct: 165 SYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEM 224

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +PD VT+T+LI G C   ++ EA +L  +++     PDV+T++ LI+ L + G  
Sbjct: 225 IVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKK 284

Query: 139 IV---ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
            +   A++LFEEM + N        PD +TY+++ DGLCK   +++A  L  +MK+  I 
Sbjct: 285 KMVDEAMSLFEEMKHKN------MIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQ 338

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PDV +YT L+ G C       AK  F  ++ +G   NV  +NV++N LCK G   EA  L
Sbjct: 339 PDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDL 398

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
              M   G  P+A  + T++         ++A+++   M + G +++
Sbjct: 399 KSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIARGLLKE 445



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 86/183 (46%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P    ++ I   L K         LF + +   I PD+ T + LI  FC+      A  +
Sbjct: 56  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 115

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           F  ++ +G  P+ +T N ++  LC  G++ +     + ++  G + D   Y TL++G C 
Sbjct: 116 FANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCK 175

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G       L   +E +    DV  Y  +IN  CKNK +  A  +YSEM+ KGI P VVT
Sbjct: 176 AGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 235

Query: 341 YNT 343
           Y T
Sbjct: 236 YTT 238


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 207/343 (60%), Gaps = 26/343 (7%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  +LR +P+PP +  FN + G L K+KHY TVLSL +++   G+ P L+ +    +
Sbjct: 61  FSLFSRLLRQNPTPPAI-EFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQ---H 116

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
               MG                + P+ +TFT+LIKGLC + +I +A      + A G + 
Sbjct: 117 PHQLMG----------------YHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQL 160

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D   Y TLI+GLC+ G T  AL+L   + +GN     + +P+ + YSTI DG+CK+  V+
Sbjct: 161 DQVGYGTLIHGLCKVGETRAALDLLRRV-DGN-----LVQPNVVMYSTIIDGMCKDKHVN 214

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A +L+ +M  + I+P+VVTY++LI GF       +A  LF +M+ + ++P+V TFN+++
Sbjct: 215 DAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILV 274

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK+GKM E   +  +M++ G++P+   Y +LMDG+CL   VN+AK +  +M   G  
Sbjct: 275 DGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVN 334

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D+ SY ILI+G+CK K+++ A++L+ EM  K I P VVTYN+
Sbjct: 335 PDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNS 377



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 175/327 (53%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   + K+KH +    L+  + S G+ P++ TY+ LI+ F  +G++     +
Sbjct: 195 PNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDL 254

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     PD  TF  L+ G C + ++ E   +F  +   G KP+V TY +L++G C 
Sbjct: 255 FNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCL 314

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++   M+    + GV   PD  +Y+ + DG CK   VD+A  LF +M  ++I
Sbjct: 315 VKEVNKAKSILYTMS----QRGV--NPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHI 368

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY SLI G C     + A  L  EM D+GV P+++T++ I++ LCKN ++D+A  
Sbjct: 369 IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIA 428

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  +   G+RP+   Y  L+DG C  GR+  A  +F  +   G    V +Y ++I+G+C
Sbjct: 429 LLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFC 488

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
                + AL+L S+M      P  VTY
Sbjct: 489 NKGLFDEALALLSKMKDNSCIPDAVTY 515



 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 173/320 (54%), Gaps = 7/320 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L             + LF ++    + PD+YT+NIL++ FCK G++  G  V
Sbjct: 230 PNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTV 289

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    P+ VT+ SL+ G C    + +A ++   +   G  PD+ +Y  LI+G C+
Sbjct: 290 FAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCK 349

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+NLF+EM + +        PD +TY+++ DGLCK G +  A +L  +M D  +
Sbjct: 350 IKKVDEAMNLFKEMHHKH------IIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGV 403

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY+S++   C  +  ++A  L  ++ DQG++PN+ T+ ++++ LCK G++++A  
Sbjct: 404 PPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHN 463

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E ++  G     + Y  ++ GFC  G  + A  L   M+ N C+ D  +Y I+I    
Sbjct: 464 IFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLF 523

Query: 315 KNKEIEGALSLYSEMLSKGI 334
              E + A  L  EM+++G+
Sbjct: 524 DKDENDKAEKL-REMITRGL 542



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 170/309 (55%), Gaps = 14/309 (4%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L L +R++   + P++  Y+ +I+  CK   V+  F +   ++    +P+ VT+++LI G
Sbjct: 182 LDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 241

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
                ++ +A  LF K+     KPDV+T+  L++G C+ G          +M  G   F 
Sbjct: 242 FFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDG----------KMKEGKTVFA 291

Query: 157 VV----CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
           ++     KP+ +TY ++ DG C    V+KAK +   M    +NPD+ +Y  LI GFC   
Sbjct: 292 MMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIK 351

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             +EA  LF EM  + + P+VVT+N +++ LCK GK+  A +L++ M   GV PD   Y+
Sbjct: 352 KVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYS 411

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++D  C   +V++A  L   ++  G   ++++Y ILI+G CK   +E A +++ ++L K
Sbjct: 412 SILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVK 471

Query: 333 GIRPTVVTY 341
           G   TV TY
Sbjct: 472 GYNITVNTY 480



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 51/196 (26%)

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE---------------- 242
           + Y+S+   F   ND  +A  LF  ++ Q   P  + FN I+                  
Sbjct: 42  IPYSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQ 101

Query: 243 -----------------------------------LCKNGKMDEASRLLELMIQIGVRPD 267
                                              LC  G++ +A    + ++ +G + D
Sbjct: 102 MEFEGINPVLFHFQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLD 161

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y TL+ G C  G    A +L   ++ N    +V  Y  +I+G CK+K +  A  LYS
Sbjct: 162 QVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYS 221

Query: 328 EMLSKGIRPTVVTYNT 343
           EM+SKGI P VVTY+ 
Sbjct: 222 EMVSKGISPNVVTYSA 237


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 203/371 (54%), Gaps = 31/371 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  MLR  P  P V  F  L G + + +  D V+SL++++    +  D+Y++NILI CF
Sbjct: 66  LFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCF 124

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G+I +    PD VTFT+L+ GLC E R+ EA   F ++    C+P+V
Sbjct: 125 CSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNV 184

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVV----CK------------- 160
            T+TTL+NGLCR G  + A+ L + M     +     +G +    CK             
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRK 244

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   P+ + YS I D LCK+G    A+ LF +M+++ I PD+ TY S+I GFC + 
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W++A+ L  EM+++ + P+VVT+N ++N   K GK  EA  L + M+  G+ P+   Y+
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYS 364

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++DGFC   R++ A+ +F  M + GC  ++ ++  LI+GYC  K I+  + L  EM   
Sbjct: 365 SMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTET 424

Query: 333 GIRPTVVTYNT 343
           G+     TYNT
Sbjct: 425 GLVADTTTYNT 435



 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 182/357 (50%), Gaps = 30/357 (8%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + SFNIL  C          LS F ++  +GL PD+ T+  L++  C   RVS       
Sbjct: 114 IYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFH 173

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++  +   P+ VTFT+L+ GLC E RI+EA AL  ++   G +P   TY T+++G+C+ G
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233

Query: 137 HTIVALNLFEEMANGN----------GEFGVVCK--------------------PDAITY 166
            T+ ALNL  +M   +               +CK                    PD  TY
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +++  G C  G    A++L  +M +  I+PDVVTY +LI  F     + EA+ L+ EM+ 
Sbjct: 294 NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP 353

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G+ PN +T++ +++  CK  ++D A  +  LM   G  P+   +NTL+DG+C   R++ 
Sbjct: 354 RGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDD 413

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             EL   M   G + D  +Y  LI+G+    ++  AL L  EM+S G+ P +VT +T
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 174/375 (46%), Gaps = 52/375 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+  +    +LF  +   G+FPDL+TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L    +PD VT+ +LI     E +  EA  L+ ++   G  P+  TY+++I+G C+
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  MA         C P+ IT++T+ DG C    +D   EL  +M +  +
Sbjct: 373 QNRLDAAEHMFYLMATKG------CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD---- 250
             D  TY +LI GF    D N A  L  EM+  G+ P++VT + +++ LC NGK+     
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 251 ------------------------------------------EASRLLELMIQIGVRPDA 268
                                                     EA  L E M   G+ PD 
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y++++DG C   R++ A ++F SM S     +V ++  LINGYCK   ++  L L+ E
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCE 606

Query: 329 MLSKGIRPTVVTYNT 343
           M  +GI    +TY T
Sbjct: 607 MGRRGIVANAITYIT 621



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 173/340 (50%), Gaps = 18/340 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L +       ++L  R+   GL P   TY  +++  CK G       +
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 75  LGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L ++   S   P+ V ++++I  LC + R  +A  LFT+++  G  PD+FTY ++I G C
Sbjct: 242 LRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            +G    A  L +EM            PD +TY+ + +   KEG   +A+EL+ +M    
Sbjct: 302 SSGRWSDAEQLLQEMLERK------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I P+ +TY+S+I GFC  N  + A+ +F  M  +G  PN++TFN +++  C   ++D+  
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL  M + G+  D + YNTL+ GF L G +N A +L   M S+G   D+ +   L++G 
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475

Query: 314 CKNKEIEGALSLYSEMLSK-----------GIRPTVVTYN 342
           C N +++ AL ++  M              G+ P V TYN
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 168/337 (49%), Gaps = 17/337 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+     +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P+ +TF +LI G C   RI +   L  ++   G   D  TY TLI+G   
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
            G    AL+L +EM +       +C PD +T  T+ DGLC  G +  A E+F  M+    
Sbjct: 443 VGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 194 ----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                     + PDV TY  LI G      + EA+ L+ EM  +G+ P+ +T++ +++ L
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++DEA+++ + M      P+   + TL++G+C  GRV+   ELF  M   G + + 
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +Y  LI G+ K   I GAL ++ EM+S G+ P  +T
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 5/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +     K    D    +F  + + G  P+L T+N LI+ +C   R+  G  +
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +    D  T+ +LI G      +  A  L  ++ + G  PD+ T  TL++GLC 
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G    AL +F+ M     +          +PD  TY+ +  GL  EG   +A+EL+ +M
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I PD +TY+S+I G C  +  +EA  +F  M  +   PNVVTF  ++N  CK G++
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 597

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+   L   M + G+  +A  Y TL+ GF   G +N A ++F  M S+G   D  +   +
Sbjct: 598 DDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 310 INGYCKNKEIEGALSLYSEM 329
           + G    +E++ A+++  ++
Sbjct: 658 LTGLWSKEELKRAVAMLEKL 677



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 151/301 (50%), Gaps = 17/301 (5%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P + +FN L       K  D  + L   +   GL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--------- 116
           G ++    +L  ++ S   PD VT  +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 117 --GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
             G +PDV TY  LI+GL   G  + A  L+EEM +     G+V  PD ITYS++ DGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  +D+A ++F  M  ++ +P+VVT+T+LI G+C A   ++   LF EM  +G+  N +
Sbjct: 558 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 617

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+  ++    K G ++ A  + + MI  GV PD      ++ G      + RA  +   +
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677

Query: 295 E 295
           +
Sbjct: 678 Q 678



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%)

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L  GF       +A  LF +M+     P+VV F  +M  + +  + D    L + M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           +R D   +N L+  FC   ++  A   F  +   G   DV ++  L++G C    +  AL
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
             + +M     RP VVT+ T
Sbjct: 170 DFFHQMFETTCRPNVVTFTT 189


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/329 (37%), Positives = 194/329 (58%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           PP+  F  + G L K KHY T +SL +++   G+ P+L T NILINCFC +G+++  F V
Sbjct: 63  PPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSV 122

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG+IL+  + PD +T  +L+KGLC +  +  +     K+ A G + +  +Y TL+NGLC+
Sbjct: 123 LGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCK 182

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A+ L   + + +       +PD + YSTI DGLCK+  V++A + F +M    I
Sbjct: 183 IGETRCAVKLLRMIEDRS------TRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGI 236

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V+TY++LI GFC A     A  L  EM+ + + PNV T+N++++ LCK GK+ EA +
Sbjct: 237 FPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKK 296

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M   G   D   YN+++DG C +  +++A  LF+ M+  G   + ++Y  LI+G C
Sbjct: 297 LLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLC 356

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   ++ A  L+  +L KG    V TYN 
Sbjct: 357 KGGRLKNAQKLFQHLLVKGCCIDVRTYNV 385



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 169/334 (50%), Gaps = 7/334 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +   +L++   P  + + N L   L         L    ++ + G   +  +Y  L+N
Sbjct: 120 FSVLGKILKLGYQPDTI-TLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLN 178

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+G       +L  I      PD V ++++I GLC +  + +A   F+++ A G  P
Sbjct: 179 GLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFP 238

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V TY+TLI G C  G  + A +L  EM   N        P+  TY+ + D LCKEG V 
Sbjct: 239 NVITYSTLIWGFCLAGQLMGAFSLLNEMILKN------INPNVYTYNILIDALCKEGKVK 292

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AK+L  +M  +    DVVTY S++ G C + + ++A  LF++M   G+QPN  T+  ++
Sbjct: 293 EAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALI 352

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK G++  A +L + ++  G   D   YN ++ G C  G  ++A  +   ME NGC+
Sbjct: 353 DGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCI 412

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            +  ++ I+I    +  E + A  L   M++KG+
Sbjct: 413 PNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKGL 446



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 6/267 (2%)

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R+L    TP  + F  ++  L        A +L  ++   G +P++ T   LIN  C  G
Sbjct: 55  RLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLG 114

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               + ++  ++        +  +PD IT +T+  GLC +G V ++     K+  +    
Sbjct: 115 QMAFSFSVLGKI------LKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQM 168

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + V+Y +L+ G C   +   A  L   + D+  +P+VV ++ I++ LCK+  +++A    
Sbjct: 169 NQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFF 228

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M   G+ P+   Y+TL+ GFCL G++  A  L   M       +V++Y ILI+  CK 
Sbjct: 229 SEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKE 288

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +++ A  L +EM  KG    VVTYN+
Sbjct: 289 GKVKEAKKLLAEMHHKGQPADVVTYNS 315



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%)

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           E  VD     F ++      P ++ +  ++        +  A  L  +M  +G++PN+VT
Sbjct: 43  ENVVDDTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVT 102

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            N+++N  C  G+M  +  +L  ++++G +PD    NTLM G CL G V R+      + 
Sbjct: 103 LNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVV 162

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + G   +  SYG L+NG CK  E   A+ L   +  +  RP VV Y+T
Sbjct: 163 AQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYST 210


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 204/376 (54%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M++  P P  +  F+ LF  +A+ K YD VL   K ++  G+  ++YT NI+INCF
Sbjct: 56  LFESMIQSRPLPSLI-DFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCF 114

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++   F V+GR L+  F P+ +TF++LI G C E R+ EA AL  ++     +P+V
Sbjct: 115 CRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNV 174

Query: 123 FTYTTLINGLC-----------------------------------RTGHTIVALNLFEE 147
            T  TLINGLC                                   ++G+T +AL+LF +
Sbjct: 175 VTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRK 234

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M   +       K   + YS + D LCK+G +D A  LF +M+ + I  DVV Y+S+I G
Sbjct: 235 MEERS------IKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGG 288

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++   +  EM+ + + PNVVTF+ +++   K GK+ EA  L   M+  G+ PD
Sbjct: 289 LCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPD 348

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y++L+DGFC   R+  A ++   M S GC  ++ +Y ILIN YCK K ++  + L+ 
Sbjct: 349 TITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFC 408

Query: 328 EMLSKGIRPTVVTYNT 343
           E+ SKG+    VTYNT
Sbjct: 409 EISSKGLVADTVTYNT 424



 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 173/329 (52%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
              V  ++I+   L K+ + D  LSLF  +   G+  D+  Y+ +I   C  GR   G  
Sbjct: 241 KASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAK 300

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  ++     P+ VTF++LI     E +++EA  L+ ++ A G  PD  TY++LI+G C
Sbjct: 301 MLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFC 360

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A  + + M +        C+P+ +TYS + +  CK   VD    LF ++  + 
Sbjct: 361 KENRLGEANQMLDLMVSKG------CEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKG 414

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  D VTY +L++GFC +   N AK LF EM+ +GV P+VVT+ ++++ LC NG++ +A 
Sbjct: 415 LVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKAL 474

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + E M +  +     +YN ++ G C   +V+ A  LF S+   G   DV +Y ++I G 
Sbjct: 475 EIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGL 534

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK   +  A  L+ +M   G  P+  TYN
Sbjct: 535 CKKGSLSEADMLFRKMKEDGCAPSDCTYN 563



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 168/333 (50%), Gaps = 6/333 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           + M      V +++ + G L  +  +D    + + +    + P++ T++ LI+ F K G+
Sbjct: 270 MEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGK 329

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +   ++     PD +T++SLI G C E+R+ EA  +   + + GC+P++ TY+ 
Sbjct: 330 LLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSI 389

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LIN  C+       + LF E+++     G+V   D +TY+T+  G C+ G ++ AKELF 
Sbjct: 390 LINSYCKAKRVDNGMRLFCEISSK----GLV--ADTVTYNTLVQGFCQSGKLNVAKELFQ 443

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M    + P VVTY  L+ G C   +  +A  +F +M    +   +  +N+I++ +C   
Sbjct: 444 EMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNAS 503

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+D+A  L   +   GV+PD   YN ++ G C  G ++ A  LF  M+ +GC     +Y 
Sbjct: 504 KVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYN 563

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           ILI  +     +  ++ L  EM  +G      T
Sbjct: 564 ILIRAHLGGSGVISSVELIEEMKMRGFAADAST 596



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 144/296 (48%), Gaps = 6/296 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L     K         L+  + + G+ PD  TY+ LI+ FCK  R+     +
Sbjct: 312 PNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQM 371

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+ VT++ LI   C   R+     LF ++ + G   D  TY TL+ G C+
Sbjct: 372 LDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQ 431

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G   VA  LF+EM +     GV   P  +TY  + DGLC  G + KA E+F KM+   +
Sbjct: 432 SGKLNVAKELFQEMVSR----GV--PPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRM 485

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              +  Y  +I G C A+  ++A  LF  +  +GV+P+V+T+NV++  LCK G + EA  
Sbjct: 486 ILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADM 545

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           L   M + G  P    YN L+        V  + EL   M+  G   D  +  +++
Sbjct: 546 LFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVV 601



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           V++A +LF  M      P ++ ++ L        +++       EM   G++ N+ T N+
Sbjct: 50  VNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNI 109

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C+  K+  A  ++   ++ G  P+   ++TL++GFCL GRV+ A  L   M    
Sbjct: 110 MINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMK 169

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              +V +   LING C    +  AL L   M+  G     +TY
Sbjct: 170 YRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITY 212



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 82/219 (37%), Gaps = 70/219 (31%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-------------------------- 227
           I+   V+Y   +R        NEA  LF  M+                            
Sbjct: 30  ISEAKVSYKERLRNGIVDIKVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVL 89

Query: 228 ---------GVQPNVVTFNVIMNELCKN-------------------------------- 246
                    G++ N+ T N+++N  C+                                 
Sbjct: 90  GFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGF 149

Query: 247 ---GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
              G++ EA  L++ M+++  RP+    NTL++G CL GRV  A  L   M   GC  + 
Sbjct: 150 CLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANE 209

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +YG ++N  CK+     AL L+ +M  + I+ +VV Y+
Sbjct: 210 ITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYS 248



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 16/112 (14%)

Query: 242 ELCKNG----KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV----- 292
           E  +NG    K++EA  L E MIQ   RP  S    L+D   L   V R KE  +     
Sbjct: 39  ERLRNGIVDIKVNEAIDLFESMIQ--SRPLPS----LIDFSKLFSAVARRKEYDLVLGFC 92

Query: 293 -SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M+ NG   ++++  I+IN +C+ +++  A S+    L  G  P  +T++T
Sbjct: 93  KEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFST 144


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 199/339 (58%), Gaps = 7/339 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML MH +PP +  F  + G LAK KHY T +SL K++   G+ P+L T NILINCFC
Sbjct: 40  FNGMLLMHHTPP-IVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFC 98

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +G++S  F VLG+IL+  + P+ +T T+L+KGLC +  + ++     K+ A G + +  
Sbjct: 99  HLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQV 158

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TL+NGLC+ G T  A+     + + +    VV       Y+TI DGLCK+  V++A 
Sbjct: 159 SYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVV------MYNTIIDGLCKDKLVNEAY 212

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           + + +M    I P+V+TYT+LI GFC A     A  L  EM+ + + PNV T+ ++++ L
Sbjct: 213 DFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDAL 272

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  LL  M   G   D   Y +L+DGFC    +++A  LF+ M+  G   + 
Sbjct: 273 CKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNK 332

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++Y  LI+G CK   ++ A  L+ ++L KG    V TYN
Sbjct: 333 YTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYN 371



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 171/334 (51%), Gaps = 7/334 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +   +L++   P  +    ++ G   K +   +V     ++ + G   +  +Y  L+N
Sbjct: 107 FSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSV-HFHDKVVAQGFQMNQVSYGTLLN 165

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+G        L  I  S    + V + ++I GLC +  + EA   ++++ A G  P
Sbjct: 166 GLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFP 225

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V TYTTLI G C  G    A +L  EM   N        P+  TY+ + D LCKEG V 
Sbjct: 226 NVITYTTLIGGFCLAGQLTGAFSLLNEMILKN------INPNVYTYAILIDALCKEGKVK 279

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AK L  +M       DVVTYTSL+ GFC   + ++A  LF++M + G+QPN  T+  ++
Sbjct: 280 EAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALI 339

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK G++ +A +L + ++  G   D   YN ++ G C  G ++ A  +   ME NGC+
Sbjct: 340 DGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCI 399

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            +V ++ I+I    K  E + A  L  EM++KG+
Sbjct: 400 PNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGL 433



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 127/263 (48%), Gaps = 12/263 (4%)

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
           TP  V F  ++  L        A +L  ++   G +P++ T   LIN  C  G    + +
Sbjct: 49  TPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFS 108

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           +  ++        +  +P+ IT +T+  GLC +G V K+     K+  +    + V+Y +
Sbjct: 109 VLGKI------LKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGT 162

Query: 204 LIRGFCYANDWNEAKCL--FIEMM-DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           L+ G C      E +C   F+ M+ D     NVV +N I++ LCK+  ++EA      M 
Sbjct: 163 LLNGLC---KIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMN 219

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             G+ P+   Y TL+ GFCL G++  A  L   M       +V++Y ILI+  CK  +++
Sbjct: 220 ARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVK 279

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A +L +EM  +G    VVTY +
Sbjct: 280 EAKNLLAEMHYRGQPADVVTYTS 302



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 35/203 (17%)

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           +  VD A   F  M   +  P +V +  ++        ++ A  L  +M  +G++PN+VT
Sbjct: 30  DNVVDDAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVT 89

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            N+++N  C  G+M  +  +L  ++++G +P+     TLM G CL G V ++      + 
Sbjct: 90  LNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVV 149

Query: 296 SNGCMRDVFSYGILIN-----------------------------------GYCKNKEIE 320
           + G   +  SYG L+N                                   G CK+K + 
Sbjct: 150 AQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVN 209

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A   YSEM ++GI P V+TY T
Sbjct: 210 EAYDFYSEMNARGIFPNVITYTT 232


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 137/340 (40%), Positives = 187/340 (55%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M P PPP   F+ +   L KNKHY TV+SLFK+  S G+ P+L T NILINCFC
Sbjct: 81  FNRMLLMRP-PPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFC 139

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +  ++  F V   IL+  + PDA+T  +LIKGLC    I  A     K+ A G + D  
Sbjct: 140 HLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQV 199

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+ G T     L  ++       G   KPD + Y+TI   LCK   V  A 
Sbjct: 200 SYGTLINGLCKAGETKAVARLLRKLE------GHSVKPDVVMYTTIIHCLCKNKRVGDAC 253

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M  + I+P+V TY +LI GFC   +  EA  L  EM  + + P+V TFN++++ L
Sbjct: 254 DLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDAL 313

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K GK+DEA  L E M    + P+   Y +L+DG C    + RA  L   M+  G   DV
Sbjct: 314 GKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDV 373

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +SY IL++  CK   +E A   +  +L KG    V TYN 
Sbjct: 374 YSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNV 413



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 174/355 (49%), Gaps = 41/355 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN--CFC--------- 63
           P +C+ NIL  C     H     S+F  +   G  PD  T N LI   CFC         
Sbjct: 126 PNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYF 185

Query: 64  ---------KMGRVSPGFVVLG-----------RILRS----CFTPDAVTFTSLIKGLCA 99
                    ++ +VS G ++ G           R+LR        PD V +T++I  LC 
Sbjct: 186 HDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCK 245

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             R+ +A  L++++   G  P+VFTY TLI G C  G+   A +L  EM   N       
Sbjct: 246 NKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKN------I 299

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            PD  T++ + D L KEG +D+A  LF +MK +N+ P++VTYTSLI G C  +    A  
Sbjct: 300 NPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIA 359

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  +M +QG+QP+V ++ ++++ LCK G+++ A +  + ++  G   +   YN +++G C
Sbjct: 360 LCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLC 419

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
             G      +L   ME  GCM D  ++  +I    +  E + A     EM+++G+
Sbjct: 420 KAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARGL 474



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 6/283 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K      V  L ++L    + PD+  Y  +I+C CK  RV     +   +
Sbjct: 200 SYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEM 259

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +P+  T+ +LI G C    + EA +L  +++     PDV+T+  LI+ L + G  
Sbjct: 260 IVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKI 319

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A++LFEEM + N        P+ +TY+++ DGLCK   +++A  L  KMK++ I PDV
Sbjct: 320 DEAISLFEEMKHKN------MFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDV 373

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            +YT L+   C       AK  F  ++ +G   NV T+NV++N LCK G   +   L   
Sbjct: 374 YSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSK 433

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           M   G  PDA  + T++         ++A++    M + G + 
Sbjct: 434 MEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARGLLE 476


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  244 bits (622), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 137/346 (39%), Positives = 200/346 (57%), Gaps = 15/346 (4%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M  +PP +  FN +    AK KHY TV SL  RL   G+ PDL+T NILINCFC
Sbjct: 47  FNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTV-SLSHRLELKGIQPDLFTLNILINCFC 104

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            MG+++ GF VL +IL+  + P  VT  +LIKGLC + ++ +A     KL A G + +  
Sbjct: 105 HMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQV 164

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            Y TLING+C+ G T  A+ L +++       G + KPD + YSTI D LCK   V +A 
Sbjct: 165 GYGTLINGVCKIGDTRAAIKLLKKID------GRLTKPDVVMYSTIIDALCKYQLVSEAY 218

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+ DVVTY +LI GFC      EA  L   M+ + + P+V T+ ++++ L
Sbjct: 219 GLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDAL 278

Query: 244 CKNGKMDEASR-------LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           CK GK+ EA R       L++ M   G   D   Y++L+DG C  G ++RA  LF  M+ 
Sbjct: 279 CKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKD 338

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G   ++F++ IL++G  K   ++ A  ++ ++L+KG    V TYN
Sbjct: 339 QGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTYN 384



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 138/267 (51%), Gaps = 1/267 (0%)

Query: 35  TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94
             + L K+++     PD+  Y+ +I+  CK   VS  + +   +     + D VT+ +LI
Sbjct: 181 AAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLI 240

Query: 95  KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            G C   ++ EA  L   +      PDV+TYT L++ LC+ G    A      + +   E
Sbjct: 241 YGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDE 300

Query: 155 FGVVCKP-DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                +P D ITYS++ DGLCK G +D+A  LF KMKD+ I P++ T+T L+ G      
Sbjct: 301 MRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGR 360

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
             +A+ +F +++ +G   NV T+NV++N  CK G ++EA  +L  M   G  P+A  + T
Sbjct: 361 LKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFET 420

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCM 300
           ++         ++A++L   M + G +
Sbjct: 421 IIIALFKKDENDKAEKLLRQMIARGLL 447



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    P  V +++ L   L KN H D  ++LF ++   G+ P+++T+ IL++   K GR
Sbjct: 301 MRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGR 360

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     V   +L   +  +  T+  +I G C +  + EA  + +K+   GC P+ FT+ T
Sbjct: 361 LKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFET 420

Query: 128 LINGLCRTGHTIVALNLFEEM 148
           +I  L +      A  L  +M
Sbjct: 421 IIIALFKKDENDKAEKLLRQM 441


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 143/341 (41%), Positives = 195/341 (57%), Gaps = 9/341 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL-FPDLYTYNILINCF 62
           F  ML +HP PP + S N L   + K KHY TV+SL   L+S G   P L T +I IN  
Sbjct: 43  FHRMLHLHP-PPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSIFINSL 101

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
             +G++   F V+ +I++  F  D  T T+L+KGLC + R  EA  L+    + G   D 
Sbjct: 102 THLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDE 161

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y TLINGLC+ G T  A+ L  +M  G        +P+ I Y+ + DGLCKEG V +A
Sbjct: 162 VCYGTLINGLCKMGKTRDAIELLRKMEKGG------VRPNLIMYNMVVDGLCKEGLVTEA 215

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIMN 241
             L  +M  + I  DV TY SLI GFC A  +  A  L  EM M + V+P+V TFN++++
Sbjct: 216 CGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVD 275

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G + EA  +  LMI+ G+ PD    N LM+G+CL G ++ AKE+F  M   G + 
Sbjct: 276 ALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLP 335

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +V SY  LINGYCK K ++ AL L +EM  + + P  VTYN
Sbjct: 336 NVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYN 376



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 167/333 (50%), Gaps = 15/333 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N++   L K         L   +   G+  D++TYN LI+ FC  G+      +
Sbjct: 194 PNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRL 253

Query: 75  LGR-ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L   +++    PD  TF  L+  LC    + EA  +F  +   G +PDV +   L+NG C
Sbjct: 254 LNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWC 313

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A  +F+ M     E G +  P+ I+YST+ +G CK   VD+A  L  +M   N
Sbjct: 314 LRGCMSEAKEVFDRMV----ERGKL--PNVISYSTLINGYCKVKMVDEALRLLTEMHQRN 367

Query: 194 INPDVVTYTSLIRGFCYAN----DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           + PD VTY  L+ G   +     +W+    L   M   G  P+++T+NV++++  K   +
Sbjct: 368 LVPDTVTYNCLLDGLSKSGRVLYEWD----LVEAMRASGQAPDLITYNVLLDDYLKRECL 423

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+A  L + ++  G+ P+   YN L+DG C  GR+  AKE+F  +   GC  ++ +Y I+
Sbjct: 424 DKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIM 483

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ING  +   ++ A +L  EM+  G  P  VT++
Sbjct: 484 INGLRREGLLDEAEALLLEMVDDGFPPNAVTFD 516



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 115/239 (48%), Gaps = 6/239 (2%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           +A + F ++      P + +   L++ + +T H    ++L   + +         KP  +
Sbjct: 38  DAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTP-----KPSLV 92

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T S   + L   G +  A  +  K+       D  T T+L++G C      EA  L+   
Sbjct: 93  TLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHA 152

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + +G   + V +  ++N LCK GK  +A  LL  M + GVRP+  +YN ++DG C  G V
Sbjct: 153 VSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLV 212

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK-GIRPTVVTYN 342
             A  L   M   G   DVF+Y  LI+G+C   + +GA+ L +EM+ K  +RP V T+N
Sbjct: 213 TEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFN 271



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 18/235 (7%)

Query: 15  PPVCSFNILF------GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           P V S N L       GC+++ K       +F R+   G  P++ +Y+ LIN +CK+  V
Sbjct: 300 PDVVSCNALMNGWCLRGCMSEAKE------VFDRMVERGKLPNVISYSTLINGYCKVKMV 353

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +L  + +    PD VT+  L+ GL    R++    L   +RA G  PD+ TY  L
Sbjct: 354 DEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVL 413

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           ++   +      AL LF+ + +          P+  TY+ + DGLCK G +  AKE+F  
Sbjct: 414 LDDYLKRECLDKALALFQHIVDTG------ISPNIRTYNILIDGLCKGGRMKAAKEIFQL 467

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +  +   P++ TY  +I G       +EA+ L +EM+D G  PN VTF+ ++  L
Sbjct: 468 LSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVRAL 522



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%)

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +VT +  I    +      A  +  +++ +G   +  T   +M  LC  G+  EA  
Sbjct: 88  KPSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALN 147

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L +  +  G   D   Y TL++G C  G+   A EL   ME  G   ++  Y ++++G C
Sbjct: 148 LYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLC 207

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +  A  L SEM+ KGI   V TYN+
Sbjct: 208 KEGLVTEACGLCSEMVGKGICIDVFTYNS 236



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 41/169 (24%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P + ++N+L     K +  D  L+LF+ +   G+ P++ TYNILI+  CK GR
Sbjct: 398 MRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGR 457

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +                                     A  +F  L   GC+P++ TY  
Sbjct: 458 MK-----------------------------------AAKEIFQLLSVKGCRPNIRTYNI 482

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           +INGL R G    A  L  EM +          P+A+T+  +   L ++
Sbjct: 483 MINGLRREGLLDEAEALLLEMVDDG------FPPNAVTFDPLVRALLEK 525


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 202/371 (54%), Gaps = 31/371 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  MLR  P  P V  F  L G + + +  D V+SL++++    +  D+Y++ ILI CF
Sbjct: 66  LFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCF 124

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G+I +    PD VTF +L+ GLC E R+ EA  LF ++    C+P+V
Sbjct: 125 CSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNV 184

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVV----CK------------- 160
            T+TTL+NGLCR G  + A+ L + M     +     +G +    CK             
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRK 244

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   P+ + YS I D LCK+G    A+ LF +M+++ I PD+ TY S+I GFC + 
Sbjct: 245 MEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W++A+ L  EM+++ + P+VVT+N ++N   K GK  EA  L + M+  G+ P+   Y+
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYS 364

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++DGFC   R++ A+ +F  M + GC  ++ ++  LI+GYC  K I+  + L  EM   
Sbjct: 365 SMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTET 424

Query: 333 GIRPTVVTYNT 343
           G+     TYNT
Sbjct: 425 GLVADTTTYNT 435



 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 183/357 (51%), Gaps = 30/357 (8%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + SF IL  C          LS F ++  +GL PD+ T+N L++  C   RVS    +  
Sbjct: 114 IYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFH 173

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++  +   P+ VTFT+L+ GLC E RI+EA AL  ++   G +P   TY T+++G+C+ G
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIG 233

Query: 137 HTIVALNLFEEMAN----------GNGEFGVVCK--------------------PDAITY 166
            T+ AL+L  +M             +     +CK                    PD  TY
Sbjct: 234 DTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +++  G C  G    A++L  +M +  I+PDVVTY +LI  F     + EA+ L+ EM+ 
Sbjct: 294 NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP 353

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G+ PN +T++ +++  CK  ++D A  +  LM   G  P+   +NTL+DG+C   R++ 
Sbjct: 354 RGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDD 413

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             EL   M   G + D  +Y  LI+G+    ++  AL L  EM+S G+ P +VT +T
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 174/375 (46%), Gaps = 52/375 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+  +    +LF  +   G+FPDL+TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L    +PD VT+ +LI     E +  EA  L+ ++   G  P+  TY+++I+G C+
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  MA         C P+ IT++T+ DG C    +D   EL  +M +  +
Sbjct: 373 QNRLDAAEHMFYLMATKG------CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD---- 250
             D  TY +LI GF    D N A  L  EM+  G+ P++VT + +++ LC NGK+     
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 251 ------------------------------------------EASRLLELMIQIGVRPDA 268
                                                     EA  L E M   G+ PD 
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y++++DG C   R++ A ++F SM S     +V ++  LINGYCK   ++  L L+ E
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCE 606

Query: 329 MLSKGIRPTVVTYNT 343
           M  +GI    +TY T
Sbjct: 607 MGRRGIVANAITYIT 621



 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 18/340 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L +       ++L  R+   GL P   TY  +++  CK+G       +
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDL 241

Query: 75  LGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L ++   S   P+ V ++++I  LC + R  +A  LFT+++  G  PD+FTY ++I G C
Sbjct: 242 LRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            +G    A  L +EM            PD +TY+ + +   KEG   +A+EL+ +M    
Sbjct: 302 SSGRWSDAEQLLQEMLERK------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I P+ +TY+S+I GFC  N  + A+ +F  M  +G  PN++TFN +++  C   ++D+  
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL  M + G+  D + YNTL+ GF L G +N A +L   M S+G   D+ +   L++G 
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475

Query: 314 CKNKEIEGALSLYSEMLSK-----------GIRPTVVTYN 342
           C N +++ AL ++  M              G+ P V TYN
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 168/337 (49%), Gaps = 17/337 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+     +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P+ +TF +LI G C   RI +   L  ++   G   D  TY TLI+G   
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
            G    AL+L +EM +       +C PD +T  T+ DGLC  G +  A E+F  M+    
Sbjct: 443 VGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 194 ----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                     + PDV TY  LI G      + EA+ L+ EM  +G+ P+ +T++ +++ L
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++DEA+++ + M      P+   + TL++G+C  GRV+   ELF  M   G + + 
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +Y  LI G+ K   I GAL ++ EM+S G+ P  +T
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 5/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +     K    D    +F  + + G  P+L T+N LI+ +C   R+  G  +
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +    D  T+ +LI G      +  A  L  ++ + G  PD+ T  TL++GLC 
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G    AL +F+ M     +          +PD  TY+ +  GL  EG   +A+EL+ +M
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I PD +TY+S+I G C  +  +EA  +F  M  +   PNVVTF  ++N  CK G++
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 597

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+   L   M + G+  +A  Y TL+ GF   G +N A ++F  M S+G   D  +   +
Sbjct: 598 DDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 310 INGYCKNKEIEGALSLYSEM 329
           + G    +E++ A+++  ++
Sbjct: 658 LTGLWSKEELKRAVAMLEKL 677



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 151/301 (50%), Gaps = 17/301 (5%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P + +FN L       K  D  + L   +   GL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--------- 116
           G ++    +L  ++ S   PD VT  +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 117 --GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
             G +PDV TY  LI+GL   G  + A  L+EEM +     G+V  PD ITYS++ DGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  +D+A ++F  M  ++ +P+VVT+T+LI G+C A   ++   LF EM  +G+  N +
Sbjct: 558 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 617

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+  ++    K G ++ A  + + MI  GV PD      ++ G      + RA  +   +
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677

Query: 295 E 295
           +
Sbjct: 678 Q 678



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%)

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L  GF       +A  LF +M+     P+VV F  +M  + +  + D    L + M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           +R D   +  L+  FC   ++  A   F  +   G   DV ++  L++G C    +  AL
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           +L+ +M     RP VVT+ T
Sbjct: 170 NLFHQMFETTCRPNVVTFTT 189


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 202/371 (54%), Gaps = 31/371 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  MLR  P  P V  F  L G + + +  D V+SL++++    +  D+Y++ ILI CF
Sbjct: 66  LFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCF 124

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G+I +    PD VTF +L+ GLC E R+ EA  LF ++    C+P+V
Sbjct: 125 CSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNV 184

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVV----CK------------- 160
            T+TTL+NGLCR G  + A+ L + M     +     +G +    CK             
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRK 244

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   P+ + YS I D LCK+G    A+ LF +M+++ I PD+ TY S+I GFC + 
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W++A+ L  EM+++ + P+VVT+N ++N   K GK  EA  L + M+  G+ P+   Y+
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYS 364

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++DGFC   R++ A+ +F  M + GC  ++ ++  LI+GYC  K I+  + L  EM   
Sbjct: 365 SMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTET 424

Query: 333 GIRPTVVTYNT 343
           G+     TYNT
Sbjct: 425 GLVADTTTYNT 435



 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 182/355 (51%), Gaps = 30/355 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           SF IL  C          LS F ++  +GL PD+ T+N L++  C   RVS    +  ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
             +   P+ VTFT+L+ GLC E RI+EA AL  ++   G +P   TY T+++G+C+ G T
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 139 IVALNLFEEMANGN----------GEFGVVCK--------------------PDAITYST 168
           + ALNL  +M   +               +CK                    PD  TY++
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +  G C  G    A++L  +M +  I+PDVVTY +LI  F     + EA+ L+ EM+ +G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           + PN +T++ +++  CK  ++D A  +  LM   G  P+   +NTL+DG+C   R++   
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           EL   M   G + D  +Y  LI+G+    ++  AL L  EM+S G+ P +VT +T
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 174/375 (46%), Gaps = 52/375 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+  +    +LF  +   G+FPDL+TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L    +PD VT+ +LI     E +  EA  L+ ++   G  P+  TY+++I+G C+
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  MA         C P+ IT++T+ DG C    +D   EL  +M +  +
Sbjct: 373 QNRLDAAEHMFYLMATKG------CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD---- 250
             D  TY +LI GF    D N A  L  EM+  G+ P++VT + +++ LC NGK+     
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 251 ------------------------------------------EASRLLELMIQIGVRPDA 268
                                                     EA  L E M   G+ PD 
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y++++DG C   R++ A ++F SM S     +V ++  LINGYCK   ++  L L+ E
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCE 606

Query: 329 MLSKGIRPTVVTYNT 343
           M  +GI    +TY T
Sbjct: 607 MGRRGIVANAITYIT 621



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 173/340 (50%), Gaps = 18/340 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L +       ++L  R+   GL P   TY  +++  CK G       +
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 75  LGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L ++   S   P+ V ++++I  LC + R  +A  LFT+++  G  PD+FTY ++I G C
Sbjct: 242 LRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            +G    A  L +EM            PD +TY+ + +   KEG   +A+EL+ +M    
Sbjct: 302 SSGRWSDAEQLLQEMLERK------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I P+ +TY+S+I GFC  N  + A+ +F  M  +G  PN++TFN +++  C   ++D+  
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL  M + G+  D + YNTL+ GF L G +N A +L   M S+G   D+ +   L++G 
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475

Query: 314 CKNKEIEGALSLYSEMLSK-----------GIRPTVVTYN 342
           C N +++ AL ++  M              G+ P V TYN
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 168/337 (49%), Gaps = 17/337 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+     +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P+ +TF +LI G C   RI +   L  ++   G   D  TY TLI+G   
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
            G    AL+L +EM +       +C PD +T  T+ DGLC  G +  A E+F  M+    
Sbjct: 443 VGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 194 ----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                     + PDV TY  LI G      + EA+ L+ EM  +G+ P+ +T++ +++ L
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++DEA+++ + M      P+   + TL++G+C  GRV+   ELF  M   G + + 
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +Y  LI G+ K   I GAL ++ EM+S G+ P  +T
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 5/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +     K    D    +F  + + G  P+L T+N LI+ +C   R+  G  +
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +    D  T+ +LI G      +  A  L  ++ + G  PD+ T  TL++GLC 
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G    AL +F+ M     +          +PD  TY+ +  GL  EG   +A+EL+ +M
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I PD +TY+S+I G C  +  +EA  +F  M  +   PNVVTF  ++N  CK G++
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 597

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+   L   M + G+  +A  Y TL+ GF   G +N A ++F  M S+G   D  +   +
Sbjct: 598 DDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 310 INGYCKNKEIEGALSLYSEM 329
           + G    +E++ A+++  ++
Sbjct: 658 LTGLWSKEELKRAVAMLEKL 677



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 151/301 (50%), Gaps = 17/301 (5%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P + +FN L       K  D  + L   +   GL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--------- 116
           G ++    +L  ++ S   PD VT  +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 117 --GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
             G +PDV TY  LI+GL   G  + A  L+EEM +     G+V  PD ITYS++ DGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  +D+A ++F  M  ++ +P+VVT+T+LI G+C A   ++   LF EM  +G+  N +
Sbjct: 558 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 617

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+  ++    K G ++ A  + + MI  GV PD      ++ G      + RA  +   +
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677

Query: 295 E 295
           +
Sbjct: 678 Q 678



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%)

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L  GF       +A  LF +M+     P+VV F  +M  + +  + D    L + M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           +R D   +  L+  FC   ++  A   F  +   G   DV ++  L++G C    +  AL
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           +L+ +M     RP VVT+ T
Sbjct: 170 NLFHQMFETTCRPNVVTFTT 189


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 206/376 (54%), Gaps = 42/376 (11%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            +F  M++  P P  +  F+ L   +AK   +D V+SL +++ ++G+  + YTY+ILINC
Sbjct: 67  ALFGEMVKSRPFPS-IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINC 125

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL------------ 109
           FC+  ++     VLG++++  + P+ VT +SL+ G C   RI EA AL            
Sbjct: 126 FCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN 185

Query: 110 -----------------------FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
                                    ++ A GC+PD+ TY  ++NGLC+ G T +A NL  
Sbjct: 186 TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 245

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           +M  G  E      P  + Y+TI DGLCK   +D A  LF +M+ + I P+VVTY+SLI 
Sbjct: 246 KMEQGKLE------PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
             C    W++A  L  +M+++ + P+V TF+ +++   K GK+ EA +L + M++  + P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
               Y++L++GFC+  R++ AK++F  M S  C  DV +Y  LI G+CK K +E  + ++
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419

Query: 327 SEMLSKGIRPTVVTYN 342
            EM  +G+    VTYN
Sbjct: 420 REMSQRGLVGNTVTYN 435



 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 179/329 (54%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L K KH D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD  TF++LI     E +++EA  L+ ++      P + TY++LING C 
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +FE M + +      C PD +TY+T+  G CK   V++  E+F +M    +
Sbjct: 374 HDRLDEAKQMFEFMVSKH------CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 427

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VTY  LI+G   A D + A+ +F EM+  GV PN++T+N +++ LCKNGK+++A  
Sbjct: 428 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E + +  + P    YN +++G C  G+V    +LF ++   G   DV +Y  +I+G+C
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +    E A +L+ EM   G  P    YNT
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNT 576



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 171/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++ ++   L K    D   +L  ++    L P +  YN +I+  CK   +     +
Sbjct: 219 PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 278

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+ VT++SLI  LC   R  +A+ L + +      PDVFT++ LI+   +
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  L++EM   +        P  +TYS++ +G C    +D+AK++F  M  ++ 
Sbjct: 339 EGKLVEAEKLYDEMVKRS------IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY +LI+GFC      E   +F EM  +G+  N VT+N+++  L + G  D A  
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M+  GV P+   YNTL+DG C  G++ +A  +F  ++ +     +++Y I+I G C
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++E    L+  +  KG++P VV YNT
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNT 541



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 6/277 (2%)

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++     + G +++S   P  + F+ L+  +   ++     +L  +++  G   + +TY+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LIN  CR     +AL +  +M     E      P+ +T S++ +G C    + +A  L 
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYE------PNIVTLSSLLNGYCHSKRISEAVALV 174

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M      P+ VT+ +LI G    N  +EA  L   M+ +G QP++VT+ V++N LCK 
Sbjct: 175 DQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR 234

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G  D A  LL  M Q  + P   +YNT++DG C    ++ A  LF  ME+ G   +V +Y
Sbjct: 235 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI+  C       A  L S+M+ + I P V T++ 
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 130/245 (53%), Gaps = 6/245 (2%)

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
           +E ++ +A ALF ++      P +  ++ L++ + +     V ++L E+M N     G+ 
Sbjct: 58  SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN----LGI- 112

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  TYS + +  C+   +  A  +  KM      P++VT +SL+ G+C++   +EA 
Sbjct: 113 -PHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAV 171

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M   G QPN VTFN +++ L  + K  EA  L++ M+  G +PD   Y  +++G 
Sbjct: 172 ALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGL 231

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G  + A  L   ME       V  Y  +I+G CK K ++ AL+L+ EM +KGIRP V
Sbjct: 232 CKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNV 291

Query: 339 VTYNT 343
           VTY++
Sbjct: 292 VTYSS 296



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 8/250 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F++M+  H   P V ++N L     K K  +  + +F+ ++  GL  +  TYNILI   
Sbjct: 383 MFEFMVSKH-CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 441

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + G       +   ++     P+ +T+ +L+ GLC   ++ +A  +F  L+    +P +
Sbjct: 442 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 501

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +TY  +I G+C+ G      +LF  ++          KPD + Y+T+  G C++G  ++A
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCNLSLKG------VKPDVVAYNTMISGFCRKGSKEEA 555

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +MK++   P+   Y +LIR      D   +  L  EM   G   +  T  ++ N 
Sbjct: 556 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNM 615

Query: 243 LCKNGKMDEA 252
           L  +G++D++
Sbjct: 616 L-HDGRLDKS 624



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 2/167 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + ++N L   L KN   +  + +F+ L    + P +YTYNI+I   CK G+V  G+ 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      PD V + ++I G C +    EA ALF +++  G  P+   Y TLI    
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           R G    +  L +EM +    F        +  + + DG   + F+D
Sbjct: 583 RDGDREASAELIKEMRSCG--FAGDASTIGLVTNMLHDGRLDKSFLD 627



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 242 ELCKNG----KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           +L +NG    K+D+A  L   M++    P    ++ L+       + +    L   M++ 
Sbjct: 51  KLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL 110

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   + ++Y ILIN +C+  ++  AL++  +M+  G  P +VT ++
Sbjct: 111 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSS 156


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 207/376 (55%), Gaps = 42/376 (11%)

Query: 2    CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
             +F  M++  P P  +  F+ L   +AK   +D V+SL +++ ++G+  + YTY+ILINC
Sbjct: 681  ALFGEMVKSRPFPS-IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINC 739

Query: 62   FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL------------ 109
            FC+  ++     VLG++++  + P+ VT +SL+ G C   RI EA AL            
Sbjct: 740  FCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN 799

Query: 110  -----------------------FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
                                     ++ A GC+PD+ TY  ++NGLC+ G T +A NL  
Sbjct: 800  TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 859

Query: 147  EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
            +M  G  E GV      + Y+TI DGLCK   +D A  LF +M+ + I P+VVTY+SLI 
Sbjct: 860  KMEQGKLEPGV------LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 913

Query: 207  GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
              C    W++A  L  +M+++ + P+V TF+ +++   K GK+ EA +L + M++  + P
Sbjct: 914  CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 973

Query: 267  DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
                Y++L++GFC+  R++ AK++F  M S  C  DV +Y  LI G+CK K +E  + ++
Sbjct: 974  SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 1033

Query: 327  SEMLSKGIRPTVVTYN 342
             EM  +G+    VTYN
Sbjct: 1034 REMSQRGLVGNTVTYN 1049



 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 200/370 (54%), Gaps = 30/370 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P P  +  FN L   + K K YD V+SL K++  +G+  DLYT+NI+INCF
Sbjct: 175 LFSDMVKSRPFPS-IVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCF 233

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   +VS    +LG++L+  + PD VT  SL+ G C  +R+ +A +L  K+   G KPD+
Sbjct: 234 CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDI 293

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC----------------------- 159
             Y  +I+ LC+T     A + F+E+        VV                        
Sbjct: 294 VAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSD 353

Query: 160 ------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                  P+ ITYS + D   K G V +AKELF +M   +I+PD+VTY+SLI G C  + 
Sbjct: 354 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 413

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            +EA  +F  M+ +G   +VV++N ++N  CK  ++++  +L   M Q G+  +   YNT
Sbjct: 414 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 473

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ GF   G V++A+E F  M+  G   D+++Y IL+ G C N E+E AL ++ +M  + 
Sbjct: 474 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 533

Query: 334 IRPTVVTYNT 343
           +   +VTY T
Sbjct: 534 MDLDIVTYTT 543



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 179/329 (54%), Gaps = 6/329 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V  +N +   L K KH D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +
Sbjct: 868  PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 927

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L  ++     PD  TF++LI     E +++EA  L+ ++      P + TY++LING C 
Sbjct: 928  LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 987

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  A  +FE M + +      C PD +TY+T+  G CK   V++  E+F +M    +
Sbjct: 988  HDRLDEAKQMFEFMVSKH------CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 1041

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              + VTY  LI+G   A D + A+ +F EM+  GV PN++T+N +++ LCKNGK+++A  
Sbjct: 1042 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 1101

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            + E + +  + P    YN +++G C  G+V    +LF ++   G   DV +Y  +I+G+C
Sbjct: 1102 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 1161

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +    E A +L+ EM   G  P    YNT
Sbjct: 1162 RKGSKEEADALFKEMKEDGTLPNSGCYNT 1190



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 171/329 (51%), Gaps = 6/329 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + ++ ++   L K    D   +L  ++    L P +  YN +I+  CK   +     +
Sbjct: 833  PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 892

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               +      P+ VT++SLI  LC   R  +A+ L + +      PDVFT++ LI+   +
Sbjct: 893  FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 952

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G  + A  L++EM   +        P  +TYS++ +G C    +D+AK++F  M  ++ 
Sbjct: 953  EGKLVEAEKLYDEMVKRS------IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 1006

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PDVVTY +LI+GFC      E   +F EM  +G+  N VT+N+++  L + G  D A  
Sbjct: 1007 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 1066

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            + + M+  GV P+   YNTL+DG C  G++ +A  +F  ++ +     +++Y I+I G C
Sbjct: 1067 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 1126

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K  ++E    L+  +  KG++P VV YNT
Sbjct: 1127 KAGKVEDGWDLFCNLSLKGVKPDVVAYNT 1155



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 169/320 (52%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L K K  +     FK +   G+ P++ TY  L+N  C   R S    +
Sbjct: 291 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 350

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++   TP+ +T+++L+       +++EA  LF ++      PD+ TY++LINGLC 
Sbjct: 351 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 410

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F+ M +        C  D ++Y+T+ +G CK   V+   +LF +M    +
Sbjct: 411 HDRIDEANQMFDLMVSKG------CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 464

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VTY +LI+GF  A D ++A+  F +M   G+ P++ T+N+++  LC NG++++A  
Sbjct: 465 VSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALV 524

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E M +  +  D   Y T++ G C TG+V  A  LF S+   G   D+ +Y  +++G C
Sbjct: 525 IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLC 584

Query: 315 KNKEIEGALSLYSEMLSKGI 334
               +    +LY++M  +G+
Sbjct: 585 TKGLLHEVEALYTKMKQEGL 604



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 167/325 (51%), Gaps = 14/325 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L  +  +     L   +    + P++ TY+ L++ F K G+V     +
Sbjct: 326 PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKEL 385

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    PD VT++SLI GLC   RI EA  +F  + + GC  DV +Y TLING C+
Sbjct: 386 FEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCK 445

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  + LF EM+    + G+V   + +TY+T+  G  + G VDKA+E F +M    I
Sbjct: 446 AKRVEDGMKLFREMS----QRGLV--SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 499

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD+ TY  L+ G C   +  +A  +F +M  + +  ++VT+  ++  +CK GK++EA  
Sbjct: 500 SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWS 559

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++PD   Y T+M G C  G ++  + L+  M+  G M++        +   
Sbjct: 560 LFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN--------DCTL 611

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
            + +I  +  L  +MLS G  P+++
Sbjct: 612 SDGDITLSAELIKKMLSCGYAPSLL 636



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 178/422 (42%), Gaps = 82/422 (19%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M+RM   P  + +++ L   L  +   D    +F  + S G   D+ +YN LIN F
Sbjct: 385 LFEEMVRMSIDPD-IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 443

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  RV  G  +   + +     + VT+ +LI+G      + +A   F+++  FG  PD+
Sbjct: 444 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 503

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC----------------------- 159
           +TY  L+ GLC  G    AL +FE+M     +  +V                        
Sbjct: 504 WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS 563

Query: 160 ------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT----------- 202
                 KPD +TY+T+  GLC +G + + + L+ KMK E +  +  T +           
Sbjct: 564 LSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELI 623

Query: 203 -------------------------SLIRGFCYANDWN----------------EAKCLF 221
                                    SL+R F     ++                +A  LF
Sbjct: 624 KKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALF 683

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            EM+     P+++ F+ +++ + K  K D    L E M  +G+  +   Y+ L++ FC  
Sbjct: 684 GEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRR 743

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++  A  +   M   G   ++ +   L+NGYC +K I  A++L  +M   G +P  VT+
Sbjct: 744 SQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTF 803

Query: 342 NT 343
           NT
Sbjct: 804 NT 805



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 170/369 (46%), Gaps = 46/369 (12%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N L     +    D     F +++  G+ PD++TYNIL+   C  G +    V+   +
Sbjct: 470 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 529

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG-- 136
            +     D VT+T++I+G+C   ++ EA +LF  L   G KPD+ TYTT+++GLC  G  
Sbjct: 530 QKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLL 589

Query: 137 HTIVAL--NLFEE--------MANGNGEFG-------VVCKPDAITYSTITDGLCKEGF- 178
           H + AL   + +E        +++G+           + C         I  G+CK+   
Sbjct: 590 HEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALS 649

Query: 179 --------------------------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                                     +D A  LF +M      P ++ ++ L+      N
Sbjct: 650 LLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMN 709

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            ++    L  +M + G+  N  T+++++N  C+  ++  A  +L  M+++G  P+    +
Sbjct: 710 KFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLS 769

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +L++G+C + R++ A  L   M   G   +  ++  LI+G   + +   A++L   M++K
Sbjct: 770 SLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK 829

Query: 333 GIRPTVVTY 341
           G +P +VTY
Sbjct: 830 GCQPDLVTY 838



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 124/250 (49%), Gaps = 8/250 (3%)

Query: 3    IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
            +F++M+  H   P V ++N L     K K  +  + +F+ ++  GL  +  TYNILI   
Sbjct: 997  MFEFMVSKH-CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 1055

Query: 63   CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
             + G       +   ++     P+ +T+ +L+ GLC   ++ +A  +F  L+    +P +
Sbjct: 1056 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 1115

Query: 123  FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +TY  +I G+C+ G      +LF  ++      GV  KPD + Y+T+  G C++G  ++A
Sbjct: 1116 YTYNIMIEGMCKAGKVEDGWDLFCNLSLK----GV--KPDVVAYNTMISGFCRKGSKEEA 1169

Query: 183  KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
              LF +MK++   P+   Y +LIR      D   +  L  EM   G   +  T  ++ N 
Sbjct: 1170 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNM 1229

Query: 243  LCKNGKMDEA 252
            L  +G++D++
Sbjct: 1230 L-HDGRLDKS 1238



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 2/167 (1%)

Query: 14   PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
            PP + ++N L   L KN   +  + +F+ L    + P +YTYNI+I   CK G+V  G+ 
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 1136

Query: 74   VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
            +   +      PD V + ++I G C +    EA ALF +++  G  P+   Y TLI    
Sbjct: 1137 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 1196

Query: 134  RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            R G    +  L +EM +    F        +  + + DG   + F+D
Sbjct: 1197 RDGDREASAELIKEMRSCG--FAGDASTIGLVTNMLHDGRLDKSFLD 1241



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           ++ A +LF  M      P +V +  L+        ++    L  +M   G++ ++ TFN+
Sbjct: 169 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 228

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  M+++G  PD     +L++GFC   RV+ A  L   M   G
Sbjct: 229 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 288

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              D+ +Y  +I+  CK K +  A   + E+  KGIRP VVTY
Sbjct: 289 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTY 331



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           N+A  LF +M+     P++V FN +++ + K  K D    L + M  +G+R D   +N +
Sbjct: 170 NDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIV 229

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++ FC   +V+ A  +   M   G   D  + G L+NG+C+   +  A+SL  +M+  G 
Sbjct: 230 INCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY 289

Query: 335 RPTVVTYNT 343
           +P +V YN 
Sbjct: 290 KPDIVAYNA 298


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 207/376 (55%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P P  +  F+ L   +AK   +D V+SL +++ ++G+  +LYTY+ILINCF
Sbjct: 68  LFGDMVKSRPFPS-IVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCF 126

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI------------------- 103
           C+  ++S    VL ++++  + PD VT  SL+ G C  +RI                   
Sbjct: 127 CRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDS 186

Query: 104 ----------------MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
                            EA AL  ++   GC+PD+ TY  ++NGLC+ G   +AL+L ++
Sbjct: 187 FTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKK 246

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M  G  E GVV       Y+TI D LC    V+ A  LF +M ++ I P+VVTY SLIR 
Sbjct: 247 MEQGKIEPGVV------IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++A  L  +M+++ + PNVVTF+ +++   K GK+ EA +L + MI+  + PD
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y++L++GFC+  R++ AK +F  M S  C  +V +Y  LI G+CK K ++  + L+ 
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  +G+    VTY T
Sbjct: 421 EMSQRGLVGNTVTYTT 436



 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 185/329 (56%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L   K+ +  L+LF  +++ G+ P++ TYN LI C C  GR S    +
Sbjct: 254 PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+ VTF++LI     E +++EA  L+ ++      PD+FTY++LING C 
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 373

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++FE M + +      C P+ +TY+T+  G CK   VD+  ELF +M    +
Sbjct: 374 HDRLDEAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VTYT+LI GF  A + + A+ +F +M+  GV P+++T++++++ LC NGK++ A  
Sbjct: 428 VGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E + +  + PD   YN +++G C  G+V    +LF S+   G   +V +Y  +++G+C
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFC 547

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +    E A +L+ EM  +G  P   TYNT
Sbjct: 548 RKGLKEEADALFREMKEEGPLPDSGTYNT 576



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 7/238 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K K  D  + LF+ ++  GL  +  TY  LI+ F +        +V
Sbjct: 394 PNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIV 453

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     PD +T++ L+ GLC   ++  A  +F  L+    +PD++TY  +I G+C+
Sbjct: 454 FKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCK 513

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G      +LF  ++      GV  KP+ +TY+T+  G C++G  ++A  LF +MK+E  
Sbjct: 514 AGKVEDGWDLFCSLSLK----GV--KPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGP 567

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            PD  TY +LIR      D   +  L  EM       +  T  ++ N L  +G++D++
Sbjct: 568 LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNML-HDGRLDKS 624



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 6/203 (2%)

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A+NLF +M            P  + +S +   + K    D    L  +M++  I+ ++ T
Sbjct: 65  AVNLFGDMVKSRP------FPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYT 118

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y+ LI  FC  +  + A  +  +MM  G +P++VT N ++N  C   ++ +A  L+  M+
Sbjct: 119 YSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMV 178

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           ++G +PD+  +NTL+ G     R + A  L   M   GC  D+ +YGI++NG CK  +I+
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            ALSL  +M    I P VV YNT
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNT 261



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 66/129 (51%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           ++A  LF +M+     P++V F+ +++ + K  K D    L E M  +G+  +   Y+ L
Sbjct: 63  DDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIL 122

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++ FC   +++ A  +   M   G   D+ +   L+NG+C    I  A+SL  +M+  G 
Sbjct: 123 INCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGY 182

Query: 335 RPTVVTYNT 343
           +P   T+NT
Sbjct: 183 QPDSFTFNT 191



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 50/96 (52%)

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+D+A  L   M++    P    ++ L+       + +    L   M++ G   ++++Y 
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ILIN +C+  ++  AL++ ++M+  G  P +VT N+
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNS 156


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 202/371 (54%), Gaps = 31/371 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  MLR  P  P V  F  L G + + +  D V+SL++++    +  D+Y++ ILI CF
Sbjct: 66  LFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCF 124

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G++ +    PD VTF +L+ GLC E R+ EA  LF ++    C+P+V
Sbjct: 125 CSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNV 184

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVV----CK------------- 160
            T+TTL+NGLCR G  + A+ L + M     +     +G +    CK             
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRK 244

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   P+ + YS I D LCK+G    A+ LF +M+++ I PD+ TY S+I GFC + 
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W++A+ L  EM+++ + P+VVT+N ++N   K GK  EA  L + M+  G+ P+   Y+
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYS 364

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++DGFC   R++ A+ +F  M + GC  ++ ++  LI+GYC  K I+  + L  EM   
Sbjct: 365 SMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTET 424

Query: 333 GIRPTVVTYNT 343
           G+     TYNT
Sbjct: 425 GLVADTTTYNT 435



 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 183/357 (51%), Gaps = 30/357 (8%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + SF IL  C          LS F +L  +GL PD+ T+N L++  C   RVS    +  
Sbjct: 114 IYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFH 173

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++  +   P+ VTFT+L+ GLC E RI+EA AL  ++   G +P   TY T+++G+C+ G
Sbjct: 174 QMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG 233

Query: 137 HTIVALNLFEEMANGN----------GEFGVVCK--------------------PDAITY 166
            T+ ALNL  +M   +               +CK                    PD  TY
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +++  G C  G    A++L  +M +  I+PDVVTY +LI  F     + EA+ L+ EM+ 
Sbjct: 294 NSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP 353

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G+ PN +T++ +++  CK  ++D A  +  LM   G  P+   +NTL+DG+C   R++ 
Sbjct: 354 RGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDD 413

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             EL   M   G + D  +Y  LI+G+    ++  AL L  EM+S G+ P +VT +T
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 174/375 (46%), Gaps = 52/375 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+  +    +LF  +   G+FPDL+TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L    +PD VT+ +LI     E +  EA  L+ ++   G  P+  TY+++I+G C+
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  MA         C P+ IT++T+ DG C    +D   EL  +M +  +
Sbjct: 373 QNRLDAAEHMFYLMATKG------CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD---- 250
             D  TY +LI GF    D N A  L  EM+  G+ P++VT + +++ LC NGK+     
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALE 486

Query: 251 ------------------------------------------EASRLLELMIQIGVRPDA 268
                                                     EA  L E M   G+ PD 
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y++++DG C   R++ A ++F SM S     +V ++  LINGYCK   ++  L L+ E
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCE 606

Query: 329 MLSKGIRPTVVTYNT 343
           M  +GI    +TY T
Sbjct: 607 MGRRGIVANAITYIT 621



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 173/340 (50%), Gaps = 18/340 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L +       ++L  R+   GL P   TY  +++  CK G       +
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241

Query: 75  LGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L ++   S   P+ V ++++I  LC + R  +A  LFT+++  G  PD+FTY ++I G C
Sbjct: 242 LRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            +G    A  L +EM            PD +TY+ + +   KEG   +A+EL+ +M    
Sbjct: 302 SSGRWSDAEQLLQEMLERK------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I P+ +TY+S+I GFC  N  + A+ +F  M  +G  PN++TFN +++  C   ++D+  
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL  M + G+  D + YNTL+ GF L G +N A +L   M S+G   D+ +   L++G 
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475

Query: 314 CKNKEIEGALSLYSEMLSK-----------GIRPTVVTYN 342
           C N +++ AL ++  M              G+ P V TYN
Sbjct: 476 CDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYN 515



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 168/337 (49%), Gaps = 17/337 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+     +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P+ +TF +LI G C   RI +   L  ++   G   D  TY TLI+G   
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
            G    AL+L +EM +       +C PD +T  T+ DGLC  G +  A E+F  M+    
Sbjct: 443 VGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKK 496

Query: 194 ----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                     + PDV TY  LI G      + EA+ L+ EM  +G+ P+ +T++ +++ L
Sbjct: 497 DLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 556

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++DEA+++ + M      P+   + TL++G+C  GRV+   ELF  M   G + + 
Sbjct: 557 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +Y  LI G+ K   I GAL ++ EM+S G+ P  +T
Sbjct: 617 ITYITLICGFRKVGNINGALDIFQEMISSGVYPDTIT 653



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 5/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +     K    D    +F  + + G  P+L T+N LI+ +C   R+  G  +
Sbjct: 358 PNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMEL 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +    D  T+ +LI G      +  A  L  ++ + G  PD+ T  TL++GLC 
Sbjct: 418 LHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCD 477

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G    AL +F+ M     +          +PD  TY+ +  GL  EG   +A+EL+ +M
Sbjct: 478 NGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 537

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I PD +TY+S+I G C  +  +EA  +F  M  +   PNVVTF  ++N  CK G++
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 597

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+   L   M + G+  +A  Y TL+ GF   G +N A ++F  M S+G   D  +   +
Sbjct: 598 DDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNM 657

Query: 310 INGYCKNKEIEGALSLYSEM 329
           + G    +E++ A+++  ++
Sbjct: 658 LTGLWSKEELKRAVAMLEKL 677



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 151/301 (50%), Gaps = 17/301 (5%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P + +FN L       K  D  + L   +   GL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--------- 116
           G ++    +L  ++ S   PD VT  +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 117 --GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
             G +PDV TY  LI+GL   G  + A  L+EEM +     G+V  PD ITYS++ DGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  +D+A ++F  M  ++ +P+VVT+T+LI G+C A   ++   LF EM  +G+  N +
Sbjct: 558 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 617

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+  ++    K G ++ A  + + MI  GV PD      ++ G      + RA  +   +
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677

Query: 295 E 295
           +
Sbjct: 678 Q 678



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%)

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L  GF       +A  LF +M+     P+VV F  +M  + +  + D    L + M +  
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           +R D   +  L+  FC   ++  A   F  +   G   DV ++  L++G C    +  AL
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           +L+ +M     RP VVT+ T
Sbjct: 170 NLFHQMFETTCRPNVVTFTT 189


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 205/377 (54%), Gaps = 42/377 (11%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            +F  M++  P P  +  F+ L   +AK   +D V+SL +++ ++G+  + YTY+ILINC
Sbjct: 67  ALFGEMVKSRPFPS-IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINC 125

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL------------ 109
           FC+  ++     VLG++++  + P+ VT +SL+ G C   RI EA AL            
Sbjct: 126 FCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN 185

Query: 110 -----------------------FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
                                    ++ A GC+PD+ TY  ++NGLC+ G T +A  L  
Sbjct: 186 TVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLN 245

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           +M  G  E      P  + Y+TI DGLCK   +D A  LF +M+ + I P+VVTY+SLI 
Sbjct: 246 KMEQGKLE------PGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
             C    W++A  L  +M+++ + P+V TF+ +++   K GK+ EA +L + M++  + P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
               Y++L++GFC+  R++ AK++F  M S  C  DV SY  LI G+CK K ++  + L+
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELF 419

Query: 327 SEMLSKGIRPTVVTYNT 343
            EM  +G+    VTY T
Sbjct: 420 REMSQRGLVGNTVTYTT 436



 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 181/329 (55%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  +   L KNKH D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +
Sbjct: 254 PGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD  TF++LI     E +++EA  L+ ++      P + TY++LING C 
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +FE M + +      C PD ++YST+  G CK   VD+  ELF +M    +
Sbjct: 374 HDRLDEAKQMFEFMVSKH------CFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VTYT+LI+G   A D + A+ +F EM+  GV PN++T+N +++ LCKNGK+++A  
Sbjct: 428 VGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E + +  + P    YN +++G C  G+V    +LF ++   G   DV +Y  +I+G+C
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +    E A +L+ EM   G  P    YNT
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNT 576



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 130/245 (53%), Gaps = 6/245 (2%)

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
           +E ++ +A ALF ++      P +  ++ L++ + +     V ++L E+M N      + 
Sbjct: 58  SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN------LG 111

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  TYS + +  C+   +  A  +  KM      P++VT +SL+ G+C++   +EA 
Sbjct: 112 MPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAV 171

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M   G QPN VTFN +++ L  + K  EA  L++ M+  G +PD   Y  +++G 
Sbjct: 172 ALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGL 231

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G  + A  L   ME       V  Y  +I+G CKNK ++ AL+L+ EM +KGIRP V
Sbjct: 232 CKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNV 291

Query: 339 VTYNT 343
           VTY++
Sbjct: 292 VTYSS 296



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 120/250 (48%), Gaps = 8/250 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F++M+  H   P V S++ L     K K  D  + LF+ ++  GL  +  TY  LI   
Sbjct: 383 MFEFMVSKH-CFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGL 441

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + G       +   ++     P+ +T+ +L+ GLC   ++ +A  +F  L+    +P +
Sbjct: 442 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 501

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +TY  +I G+C+ G      +LF  ++          KPD + Y+T+  G C++G  ++A
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCNLSLKG------VKPDVVAYNTMISGFCRKGSKEEA 555

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +MK++   P+   Y +LIR      D   +  L  EM   G   +  T  ++ N 
Sbjct: 556 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNM 615

Query: 243 LCKNGKMDEA 252
           L  +G++D++
Sbjct: 616 L-HDGRLDKS 624



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 2/167 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + ++N L   L KN   +  + +F+ L    + P +YTYNI+I   CK G+V  G+ 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      PD V + ++I G C +    EA ALF +++  G  P+   Y TLI    
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           R G    +  L +EM +    F        +  + + DG   + F+D
Sbjct: 583 RDGDREASAELIKEMRSCG--FAGDASTIGLVTNMLHDGRLDKSFLD 627



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 242 ELCKNG----KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           +L +NG    K+D+A  L   M++    P    ++ L+       + +    L   M++ 
Sbjct: 51  KLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL 110

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   + ++Y ILIN +C+  ++  AL++  +M+  G  P +VT ++
Sbjct: 111 GMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSS 156


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 204/387 (52%), Gaps = 52/387 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P ++TY ILI
Sbjct: 42  VFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHTYAILI 99

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
            C C+ GR+  GF  LG +++  F  DA+TFT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 100 GCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGC 159

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            PDVF+Y  L+ GLC    +  AL L   MA+  G       PD ++Y+T+ +G  KEG 
Sbjct: 160 IPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGS---PPDVVSYNTVLNGFFKEGI 216

Query: 179 --------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
                   +DKA E+   M    + PD +TY S++ G+C +    EA     +M   GV+
Sbjct: 217 QTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVE 276

Query: 231 PNVVTFNVIMNELCKNGKMDEA-----------------------------------SRL 255
           PNVVT++ +MN LCKNG+  EA                                    +L
Sbjct: 277 PNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKL 336

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            +LM++IGV+PD   YNTL+DG CL G+++ A +L  SM S G   D+ +YG LINGYC+
Sbjct: 337 FDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCR 396

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
              ++ AL+L+ EM+S G+ P ++TYN
Sbjct: 397 VSRMDDALALFKEMVSSGVSPNIITYN 423



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 176/339 (51%), Gaps = 17/339 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL---NSIGLFPDLYTYNILINCFCKMG----- 66
           P V S+N L   L         L L   +      G  PD+ +YN ++N F K G     
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKL 220

Query: 67  ---RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
               +     VL  ++++   PD +T+ S++ G C+  +  EA     K+R+ G +P+V 
Sbjct: 221 TAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVV 280

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY++L+N LC+ G +  A  +F+ M     E      PD  TY T+  G CKEG V +++
Sbjct: 281 TYSSLMNYLCKNGRSTEARKIFDSMTKRGLE------PDIATYRTLLQGHCKEGRVIESE 334

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +LF  M    + PD++TY +LI G C A   +EA  L   M+  GV+P++VT+  ++N  
Sbjct: 335 KLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGY 394

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C+  +MD+A  L + M+  GV P+   YN ++ G   T R   AKEL+VS+  +G   ++
Sbjct: 395 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLEL 454

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +Y I+++G CKN   + AL ++  +    ++    T+N
Sbjct: 455 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFN 493



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 167/338 (49%), Gaps = 14/338 (4%)

Query: 13  SPPPVCSFNILFGCLAKN--------KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           SPP V S+N +     K         +  D  + +   +   G+ PD  TYN +++ +C 
Sbjct: 197 SPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 256

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
            G+       L ++      P+ VT++SL+  LC   R  EA  +F  +   G +PD+ T
Sbjct: 257 SGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIAT 316

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y TL+ G C+ G  I +  LF+ M       GV  KPD ITY+T+ DG C  G +D+A +
Sbjct: 317 YRTLLQGHCKEGRVIESEKLFDLMV----RIGV--KPDIITYNTLIDGCCLAGKMDEATK 370

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L   M    + PD+VTY +LI G+C  +  ++A  LF EM+  GV PN++T+N+I+  L 
Sbjct: 371 LLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF 430

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
              +   A  L   + + G + + S YN ++ G C     + A  +F ++       +  
Sbjct: 431 HTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 490

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++ I+I    K   ++ A  L++   + G+ P V TY+
Sbjct: 491 TFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYS 528



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 140/295 (47%), Gaps = 6/295 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P V +++ L   L KN        +F  +   GL PD+ TY  L+   CK GR
Sbjct: 270 MRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGR 329

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +   ++R    PD +T+ +LI G C   ++ EA  L   + + G KPD+ TY T
Sbjct: 330 VIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGT 389

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LING CR      AL LF+EM +          P+ ITY+ I  GL        AKEL++
Sbjct: 390 LINGYCRVSRMDDALALFKEMVSSG------VSPNIITYNIILQGLFHTRRTAAAKELYV 443

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            +       ++ TY  ++ G C  N  +EA  +F  +    +Q    TFN+++  L K G
Sbjct: 444 SITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCG 503

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           +MDEA  L       G+ PD   Y+ + +     G +    +LF+SME NGC  D
Sbjct: 504 RMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSAD 558



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 129/274 (47%), Gaps = 7/274 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R+   P  +    ++ GC    K  D    L   + S+G+ PD+ TY  LIN +
Sbjct: 336 LFDLMVRIGVKPDIITYNTLIDGCCLAGK-MDEATKLLASMVSVGVKPDIVTYGTLINGY 394

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++ R+     +   ++ S  +P+ +T+  +++GL    R   A  L+  +   G + ++
Sbjct: 395 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLEL 454

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +++GLC+   T  AL +F+ +   + +       +  T++ +   L K G +D+A
Sbjct: 455 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKCGRMDEA 508

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K+LF       + PDV TY+ +           E   LF+ M + G   +    N I+ +
Sbjct: 509 KDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRK 568

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           L + G +  A   L ++ +     +AS  + L++
Sbjct: 569 LLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 602



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P V TY  LI   C A   +        ++ +G + + +TF  ++  LC + +  +A 
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 254 RL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN---GCMRDVFSYGIL 309
            + L  M ++G  PD   YN L+ G C   R   A EL   M  +   G   DV SY  +
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 310 INGYCKN--------KEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +NG+ K         + ++ A+ + + M+  G+ P  +TYN+
Sbjct: 208 LNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNS 249


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 134/339 (39%), Positives = 186/339 (54%), Gaps = 7/339 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M P PPP   FN +   L KNK Y TV+SLFK+    G+ PDL T +ILINCFC
Sbjct: 49  FNRMLLMRP-PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFC 107

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +  ++  F V   IL+  + P+A+T  +LIKGLC    I  A     K+ A G + D  
Sbjct: 108 HLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQV 167

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+ G T     L  ++       G   KPD + Y+TI   LCK   +  A 
Sbjct: 168 SYGTLINGLCKAGETKAVARLLRKLE------GHSVKPDLVMYTTIIHCLCKNKLLGDAC 221

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M  + I+P+V TYT+LI GFC   +  EA  L  EM  + + P+V TFN++++ L
Sbjct: 222 DLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDAL 281

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K GK+DEA  L E M    + P+   Y +L+DG C    + RA  L   M+  G   +V
Sbjct: 282 AKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNV 341

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +SY IL++  CK   +E A   +  +L KG    V TYN
Sbjct: 342 YSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYN 380



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 175/355 (49%), Gaps = 41/355 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN--CFC--------- 63
           P +C+ +IL  C     H     S+F  +   G  P+  T N LI   CFC         
Sbjct: 94  PDLCTLSILINCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHF 153

Query: 64  ---------KMGRVSPGFVVLG-----------RILRS----CFTPDAVTFTSLIKGLCA 99
                    ++ +VS G ++ G           R+LR        PD V +T++I  LC 
Sbjct: 154 HDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCK 213

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
              + +A  L++++   G  P+VFTYTTLI+G C  G+   A +L  EM   N       
Sbjct: 214 NKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKN------I 267

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            PD  T++ + D L KEG +D+A  LF +MK +N+ P++VTYTSLI G C  +    A  
Sbjct: 268 NPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIA 327

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  +M +QG+QPNV ++ ++++ LCK G+++ A +  + ++  G   +   YN +++G C
Sbjct: 328 LCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLC 387

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
             G      +L   ME  GCM +  ++  +I    +  E + A     EM+++G+
Sbjct: 388 KAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREMIARGL 442



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 140/283 (49%), Gaps = 6/283 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K      V  L ++L    + PDL  Y  +I+C CK   +     +   +
Sbjct: 168 SYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEM 227

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +P+  T+T+LI G C    + EA +L  +++     PDV+T+  LI+ L + G  
Sbjct: 228 IVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKI 287

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A++LFEEM + N        P+ +TY+++ DGLCK   +++A  L  KMK++ I P+V
Sbjct: 288 DEAMSLFEEMKHKN------MFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNV 341

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            +YT L+   C       AK  F  ++ +G   NV T+NV++N LCK G   +   L   
Sbjct: 342 YSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSK 401

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           M   G  P+A  + T++         ++A++    M + G ++
Sbjct: 402 MEGKGCMPNAITFKTIICALLEKDENDKAEKFLREMIARGLLK 444



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P    ++ I   L K         LF + +   I PD+ T + LI  FC+      A  +
Sbjct: 59  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSV 118

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           F  ++ +G  PN +T N ++  LC  G++  A    + ++  G + D   Y TL++G C 
Sbjct: 119 FANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCK 178

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G       L   +E +    D+  Y  +I+  CKNK +  A  LYSEM+ KGI P V T
Sbjct: 179 AGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFT 238

Query: 341 YNT 343
           Y T
Sbjct: 239 YTT 241



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 59/163 (36%), Gaps = 35/163 (21%)

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL----------------- 258
           +A   F  M+     P    FN I++ L KN +      L +                  
Sbjct: 44  DAVASFNRMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILI 103

Query: 259 ------------------MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
                             +++ G  P+A   NTL+ G C  G + RA      + + G  
Sbjct: 104 NCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQ 163

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D  SYG LING CK  E +    L  ++    ++P +V Y T
Sbjct: 164 LDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTT 206


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 198/340 (58%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P P  +  FN L   + K K YD V+SL K++  +G+  DLYT+NI+INCF
Sbjct: 72  LFREMVKTRPFPS-IVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCF 130

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   +VS    VLG++L+  + PD VT  SL+ G C  +R+ +A +L  K+   G +PD+
Sbjct: 131 CCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDI 190

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  +I+ LC+T     AL+ F+E+    G  G+  +P+ +TY+ + +GLC  G  + A
Sbjct: 191 VAYNAIIDSLCKTRRVNDALDFFKEI----GRKGI--RPNVVTYTALVNGLCNSGRWNDA 244

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M    I P+V+TY++L+  F       EAK +F EM+   + P++VT++ ++N 
Sbjct: 245 ARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLING 304

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC + ++DEA+++ +LM+  G  PD   YNTL++GFC   RV    +LF  M   G + +
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNN 364

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  LI G+ +  +++ A   +S+M S G+ P + TYN
Sbjct: 365 TVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYN 404



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 169/320 (52%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L K +  +  L  FK +   G+ P++ TY  L+N  C  GR +    +
Sbjct: 188 PDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARL 247

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++   TP+ +T+++L+       +++EA  +F ++      PD+ TY++LINGLC 
Sbjct: 248 LRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCL 307

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F+ M +        C PD ++Y+T+ +G CK   V+   +LF KM    +
Sbjct: 308 HDRIDEANQMFDLMVSKG------CFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGL 361

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VTY +LI+GF    D ++A+  F +M   GV P++ T+N+++  LC NG +++A  
Sbjct: 362 VNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALV 421

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E M +  +  D   Y T++ G C TG+V  A  LF S+   G   D+ +Y  +++G C
Sbjct: 422 IFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLC 481

Query: 315 KNKEIEGALSLYSEMLSKGI 334
                    +LY++M  +G+
Sbjct: 482 TKGLQHEVEALYTKMKQEGL 501



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 169/325 (52%), Gaps = 12/325 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L  +  ++    L + +    + P++ TY+ L++ F K G+V     +
Sbjct: 223 PNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEI 282

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    PD VT++SLI GLC   RI EA  +F  + + GC PDV +Y TLING C+
Sbjct: 283 FEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCK 342

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  + LF +M+    + G+V   + +TY+T+  G  + G VDKA+E F +M    +
Sbjct: 343 AKRVEDGMKLFRKMS----QRGLV--NNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGV 396

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD+ TY  L+ G C      +A  +F +M    +  ++VT+  ++  +CK GK+++A  
Sbjct: 397 SPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWG 456

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++PD   Y T+M G C  G  +  + L+  M+  G M++     +L  G  
Sbjct: 457 LFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKN---DSMLCLG-- 511

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
            + +I  +  L  +MLS G  P+++
Sbjct: 512 -DGDITISAELIKKMLSCGYAPSLL 535



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 9/192 (4%)

Query: 159 CKPDAITYSTITDGLCKEGF---------VDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           C+  A   S+++ G  +E           +  A  LF +M      P +V +  L+    
Sbjct: 37  CRCSARASSSVSGGDLRERLSKTRLRDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIV 96

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
               ++    L  +M   G++ ++ TFN+++N  C   ++  A  +L  M+++G  PD  
Sbjct: 97  KMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRV 156

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
              +L++GFC   RV+ A  L   M   G   D+ +Y  +I+  CK + +  AL  + E+
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEI 216

Query: 330 LSKGIRPTVVTY 341
             KGIRP VVTY
Sbjct: 217 GRKGIRPNVVTY 228



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 68/129 (52%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           ++A  LF EM+     P++V FN +++ + K  K D    L + M  +G+R D   +N +
Sbjct: 67  HDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIV 126

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++ FC   +V+ A  +   M   G   D  + G L+NG+C+   +  A+SL  +M+  G 
Sbjct: 127 INCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY 186

Query: 335 RPTVVTYNT 343
           RP +V YN 
Sbjct: 187 RPDIVAYNA 195


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 195/341 (57%), Gaps = 20/341 (5%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  + SFNIL  C          LS F +L  +G  P L T+N L++  C   RVS    
Sbjct: 12  PCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALD 71

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  ++ +    P+ VTFT+L+ GLC E R++EA AL  ++   G +P+  TY T+++G+C
Sbjct: 72  LFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 127

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T+ ALNL  +M     E   + KPD + YS I DGL K+G    A+ LF++M+D+ 
Sbjct: 128 KMGDTVSALNLLRKME----ELSHI-KPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKG 182

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I PD+VTY+ +I GFC +  W+EA+ L  EM+ + + P+VVTF+ ++N L K G ++ A 
Sbjct: 183 IFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQ 242

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-----------NGCMRD 302
            LL+ MI  GV P+    NTL+DG C +G++  A E+F +M+            NG   D
Sbjct: 243 DLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPD 302

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +Y ILI+G     +   A  LY EM  +GI P  VTY++
Sbjct: 303 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSS 343



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 165/324 (50%), Gaps = 6/324 (1%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H  P  V    I+ G     +H D   +LF  +   G+FPD+ TY+ +IN FC  G+ S 
Sbjct: 147 HIKPDVVIYSAIIDGLWKDGRHTDAQ-NLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSE 205

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L  +L    +PD VTF+ LI  L  E  +  A  L  ++ + G  P+V T  TL++
Sbjct: 206 AQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKEL 185
           GLC +G    AL +F+ M     +          +PD  TY+ +  GL  EG   +A+EL
Sbjct: 266 GLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL 325

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           + +M    I PD VTY+S+I G C  +  +EA  +F  M  +   PN+VTFN ++   CK
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G +D+   L   M + G+  +A  Y TL+ GF   G +N + ++F  M S+G   D  +
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTIT 445

Query: 306 YGILINGYCKNKEIEGALSLYSEM 329
              ++ G    +E++ AL++  E+
Sbjct: 446 IRNMLTGLWSKEELKKALAMLEEL 469



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 175/367 (47%), Gaps = 41/367 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L +       ++L  R+   GL P+  TY  +++  CKMG       +
Sbjct: 79  PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 138

Query: 75  LGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L ++   S   PD V ++++I GL  + R  +A  LF +++  G  PD+ TY+ +ING C
Sbjct: 139 LRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFC 198

Query: 134 RTGHTIVALNLFEEM---------ANGNGEFGVVCK--------------------PDAI 164
            +G    A  L +EM            +G    + K                    P+ +
Sbjct: 199 SSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVV 258

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDE-----------NINPDVVTYTSLIRGFCYAND 213
           T +T+ DGLC  G +  A E+F  M+              + PDV TY  LI G      
Sbjct: 259 TCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGK 318

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + EA+ L+ EM  +G+ P+ VT++ ++N LCK  ++DEA+++ + M      P+   +NT
Sbjct: 319 FLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNT 378

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ G+C  G V+   ELF  M   G + +  +Y  LI G+ K   I G+L ++ EM+S G
Sbjct: 379 LITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG 438

Query: 334 IRPTVVT 340
           + P  +T
Sbjct: 439 VYPDTIT 445


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 195/341 (57%), Gaps = 20/341 (5%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  + SFNIL  C          LS F +L  +G  P L T+N L++  C   RVS    
Sbjct: 12  PCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALD 71

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  ++ +    P+ VTFT+L+ GLC E R++EA AL  ++   G +P+  TY T+++G+C
Sbjct: 72  LFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 127

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T+ ALNL  +M     E   + KPD + YS I DGL K+G    A+ LF++M+D+ 
Sbjct: 128 KMGDTVSALNLLRKME----ELSHI-KPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKG 182

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I PD+VTY+ +I GFC +  W+EA+ L  EM+ + + P+VVTF+ ++N L K G ++ A 
Sbjct: 183 IFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQ 242

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-----------NGCMRD 302
            LL+ MI  GV P+    NTL+DG C +G++  A E+F +M+            NG   D
Sbjct: 243 DLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPD 302

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +Y ILI+G     +   A  LY EM  +GI P  VTY++
Sbjct: 303 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSS 343



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 165/324 (50%), Gaps = 6/324 (1%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H  P  V    I+ G     +H D   +LF  +   G+FPD+ TY+ +IN FC  G+ S 
Sbjct: 147 HIKPDVVIYSAIIDGLWKDGRHTDAQ-NLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSE 205

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L  +L    +PD VTF+ LI  L  E  +  A  L  ++ + G  P+V T  TL++
Sbjct: 206 AQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKEL 185
           GLC +G    AL +F+ M     +          +PD  TY+ +  GL  EG   +A+EL
Sbjct: 266 GLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL 325

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           + +M    I PD VTY+S+I G C  +  +EA  +F  M  +   PN+VTFN ++   CK
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G +D+   L   M + G+  +A  Y TL+ GF   G +N + ++F  M S+G   D  +
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTIT 445

Query: 306 YGILINGYCKNKEIEGALSLYSEM 329
              ++ G    +E++ AL++  E+
Sbjct: 446 IRNMLTGLWSKEELKRALAMLEEL 469



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/367 (29%), Positives = 175/367 (47%), Gaps = 41/367 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L +       ++L  R+   GL P+  TY  +++  CKMG       +
Sbjct: 79  PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 138

Query: 75  LGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L ++   S   PD V ++++I GL  + R  +A  LF +++  G  PD+ TY+ +ING C
Sbjct: 139 LRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFC 198

Query: 134 RTGHTIVALNLFEEM---------ANGNGEFGVVCK--------------------PDAI 164
            +G    A  L +EM            +G    + K                    P+ +
Sbjct: 199 SSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVV 258

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDE-----------NINPDVVTYTSLIRGFCYAND 213
           T +T+ DGLC  G +  A E+F  M+              + PDV TY  LI G      
Sbjct: 259 TCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGK 318

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + EA+ L+ EM  +G+ P+ VT++ ++N LCK  ++DEA+++ + M      P+   +NT
Sbjct: 319 FLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNT 378

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ G+C  G V+   ELF  M   G + +  +Y  LI G+ K   I G+L ++ EM+S G
Sbjct: 379 LITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG 438

Query: 334 IRPTVVT 340
           + P  +T
Sbjct: 439 VYPDTIT 445


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 199/345 (57%), Gaps = 12/345 (3%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCF 62
           F  ML + P P  +  FN+LFG +AK++HY T +SL K L+S+G    D+ T NI INC 
Sbjct: 62  FHRMLTLTPFPC-IQDFNLLFGLVAKSQHYATAISLIKILHSLGDGSADVCTLNIAINCL 120

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C M + + GF VLG + +    P  VT  +++ GLC E  +  A  L  K+   G   + 
Sbjct: 121 CHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNA 180

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  L+NGLC+ G T  AL   ++M   N        P+ + Y+ I DGLCK G V +A
Sbjct: 181 RTYGALVNGLCKIGDTSGALECLKKMVKRN------LGPNVVVYNAILDGLCKRGLVGEA 234

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYA-NDWNEAKCLFIEMM-DQGVQPNVVTFNVIM 240
             L  +M   N+ P+VVTY  LI+G C     W E   LF EM+ ++G+ P+V TF++++
Sbjct: 235 LGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILV 294

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--ESNG 298
           +  CK G +  A  ++  M++IGV P+   YN+L+ G+CL  ++  A  +F  M  E  G
Sbjct: 295 DGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEG 354

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C+  V ++  LI+G+CK KE++ A+SL SEM+ KG+ P V T+ +
Sbjct: 355 CLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTS 399



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 160/332 (48%), Gaps = 8/332 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC-KMGRVSPGFV 73
           P V  +N +   L K       L L   +  + + P++ TYN LI   C + G    G  
Sbjct: 213 PNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVG 272

Query: 74  VLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           +   ++      PD  TF+ L+ G C E  ++ A ++   +   G +P+V TY +LI G 
Sbjct: 273 LFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGY 332

Query: 133 CRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           C       A+ +F  M   G G     C P  +T++++  G CK   VDKA  L  +M  
Sbjct: 333 CLRSQMEEAMRVFGLMVREGEG-----CLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVG 387

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + ++PDV T+TSLI GFC       A+ LF  M + G  PN+ T  V+++ L K     E
Sbjct: 388 KGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSE 447

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  L   M++ G+  D  +YN ++DG C  G++N A++L   +   G   D ++Y I+I 
Sbjct: 448 AVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIK 507

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G C+   ++ A  L  +M   G  P   +YN 
Sbjct: 508 GLCREGLLDDAEELLRKMKENGCPPNKCSYNV 539



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 171/325 (52%), Gaps = 14/325 (4%)

Query: 15  PPVCSFNILF-GCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P V ++N L  G   +   +   + LF  +    G+ PD+ T++IL++ FCK G +    
Sbjct: 248 PNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAE 307

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLIN 130
            V+G ++R    P+ VT+ SLI G C  S++ EA  +F  +     GC P V T+ +LI+
Sbjct: 308 SVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIH 367

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G C+      A++L  EM  G G       PD  T++++  G C+      A+ELF  MK
Sbjct: 368 GWCKVKEVDKAMSLLSEMV-GKG-----LDPDVFTWTSLIGGFCEVKKPLAARELFFTMK 421

Query: 191 DENINPDVVTYTSLIRGF--CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           +    P++ T   ++ G   C+ +  +EA  LF  MM  G+  ++V +N++++ +CK GK
Sbjct: 422 EHGQVPNLQTCAVVLDGLLKCWLD--SEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGK 479

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +++A +LL  ++  G++ D+  YN ++ G C  G ++ A+EL   M+ NGC  +  SY +
Sbjct: 480 LNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNV 539

Query: 309 LINGYCKNKEIEGALSLYSEMLSKG 333
            + G  +  +I  +      M  KG
Sbjct: 540 FVQGLLRKYDIARSRKYLQIMKDKG 564



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 151/319 (47%), Gaps = 10/319 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M+      P V +F+IL     K        S+   +  IG+ P++ TYN LI  +
Sbjct: 273 LFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGY 332

Query: 63  CKMGRVSPGFVVLGRILRS---CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           C   ++     V G ++R    C  P  VT  SLI G C    + +A +L +++   G  
Sbjct: 333 CLRSQMEEAMRVFGLMVREGEGCL-PSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLD 391

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PDVFT+T+LI G C     + A  LF  M     E G V  P+  T + + DGL K    
Sbjct: 392 PDVFTWTSLIGGFCEVKKPLAARELFFTMK----EHGQV--PNLQTCAVVLDGLLKCWLD 445

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            +A  LF  M    ++ D+V Y  ++ G C     N+A+ L   ++ +G++ +  T+N++
Sbjct: 446 SEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIM 505

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  LC+ G +D+A  LL  M + G  P+   YN  + G      + R+++    M+  G 
Sbjct: 506 IKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDKGF 565

Query: 300 MRDVFSYGILINGYCKNKE 318
             D  +  +LI     N+E
Sbjct: 566 PVDATTAELLIRFLSANEE 584


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 137/371 (36%), Positives = 201/371 (54%), Gaps = 40/371 (10%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M  +PP V  FN +    A  KHY T +SL  RL   G+ PD +T NIL+NCFC
Sbjct: 58  FNSMLCMRHTPP-VIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNILMNCFC 116

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            MG+++ GF VL +IL+  + P  +TFT+LIKGLC + ++ +A     KL A G K D  
Sbjct: 117 HMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQV 176

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLING+C+ G T  A+ L  ++       G + KP+   Y+TI D LCK   V +A 
Sbjct: 177 SYGTLINGVCKIGDTRGAIKLVRKID------GRLTKPNVEMYNTIIDALCKYQLVSEAY 230

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF +M  + I+ +VV+Y  +I+GFC +   +EA  LF EM  + + P +VT+  +M+ L
Sbjct: 231 GLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGL 290

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR-- 301
           CK+G++     L++ M   G+  D   YN+L+DG C  G ++RA  LF  M+     R  
Sbjct: 291 CKSGRISYVWELIDEMHDRGIPADVITYNSLIDGLCKNGHLDRAIALFNKMKDXRFDRLT 350

Query: 302 -------------------------------DVFSYGILINGYCKNKEIEGALSLYSEML 330
                                          DV+ Y ++INGYCK   +E AL++ S+M 
Sbjct: 351 FTILLDGLCKGGRLKDAQEVFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKME 410

Query: 331 SKGIRPTVVTY 341
             G  P+ VT+
Sbjct: 411 DNGCIPSAVTF 421



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 157/320 (49%), Gaps = 8/320 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L   L      +  L    +L + G+  D  +Y  LIN  CK+G       +
Sbjct: 138 PHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKL 197

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + +I      P+   + ++I  LC    + EA  LF+++ A G   +V +Y  +I G C+
Sbjct: 198 VRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCK 257

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     ALNLF+EM   N        P  +TY ++ DGLCK G +    EL  +M D  I
Sbjct: 258 SKMVDEALNLFKEMHQKN------MVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGI 311

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             DV+TY SLI G C     + A  LF +M D   + + +TF ++++ LCK G++ +A  
Sbjct: 312 PADVITYNSLIDGLCKNGHLDRAIALFNKMKD--XRFDRLTFTILLDGLCKGGRLKDAQE 369

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + ++      D   YN +++G+C  G +  A  +   ME NGC+    ++ I+IN   
Sbjct: 370 VFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCIPSAVTFEIIINALF 429

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           +  E + A  L  EM+++G+
Sbjct: 430 EKDENDKAEKLLHEMIARGL 449



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD A   F  M      P V+ +  ++  F     ++ A  L   +  +G+QP+  T N+
Sbjct: 51  VDDAVSQFNSMLCMRHTPPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNI 110

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +MN  C  G+++    +L  +++ G +P    + TL+ G CL G+VN+A      + + G
Sbjct: 111 LMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 170

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              D  SYG LING CK  +  GA+ L  ++  +  +P V  YNT
Sbjct: 171 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNT 215


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 198/343 (57%), Gaps = 9/343 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSL--FKRLNSIGLFPDLYTYNILIN 60
           +F  M++  P  P +  FN L   +AK K +D V+SL    ++  +G  P + T + L+N
Sbjct: 29  LFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLN 87

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +C   R+S    ++ +++   + PD +TFT+LI GL   ++  EA AL  ++   GC+P
Sbjct: 88  GYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP 147

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY  ++NGLC+ G   +A NL  +M     E       D + ++TI D LCK   VD
Sbjct: 148 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE------ADVVIFNTIIDSLCKYRHVD 201

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  LF +M+ + I P+VVTY+SLI   C    W++A  L  +M+++ + PN+VTFN ++
Sbjct: 202 DALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 261

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   K GK  EA +L + MI+  + PD   YN+L++GFC+  R+++AK++F  M S  C 
Sbjct: 262 DAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF 321

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D+ +Y  LI G+CK+K +E    L+ EM  +G+    VTY T
Sbjct: 322 PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 364



 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 179/327 (54%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  FN +   L K +H D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +L 
Sbjct: 184 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 243

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VTF +LI     E + +EA  L   +      PD+FTY +LING C   
Sbjct: 244 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHD 303

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +FE M + +      C PD  TY+T+  G CK   V+   ELF +M    +  
Sbjct: 304 RLDKAKQMFEFMVSKD------CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 357

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTYT+LI+G  +  D + A+ +F +M+  GV P+++T++++++ LC NGK+++A  + 
Sbjct: 358 DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF 417

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M +  ++ D  +Y T+++G C  G+V+   +LF S+   G   +V +Y  +I+G C  
Sbjct: 418 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 477

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + ++ A +L  +M   G  P   TYNT
Sbjct: 478 RLLQEAYALLKKMKEDGPLPDSGTYNT 504



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 182/371 (49%), Gaps = 30/371 (8%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M+ M   P  +    ++ G    NK  + V +L  R+   G  P+L TY +++N 
Sbjct: 100 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV-ALVDRMVQRGCQPNLVTYGVVVNG 158

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +   F +L ++  +    D V F ++I  LC    + +A  LF ++   G +P+
Sbjct: 159 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 218

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGN------------------GEFGVVCK--- 160
           V TY++LI+ LC  G    A  L  +M                      G+F    K   
Sbjct: 219 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHD 278

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   PD  TY+++ +G C    +DKAK++F  M  ++  PD+ TY +LI+GFC + 
Sbjct: 279 DMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSK 338

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              +   LF EM  +G+  + VT+  ++  L  +G  D A ++ + M+  GV PD   Y+
Sbjct: 339 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 398

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+DG C  G++ +A E+F  M+ +    D++ Y  +I G CK  +++    L+  +  K
Sbjct: 399 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 458

Query: 333 GIRPTVVTYNT 343
           G++P VVTYNT
Sbjct: 459 GVKPNVVTYNT 469



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 148/298 (49%), Gaps = 8/298 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L     K   +     L   +    + PD++TYN LIN FC   R+     +
Sbjct: 252 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 311

Query: 75  LG-RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
               + + CF PD  T+ +LIKG C   R+ +   LF ++   G   D  TYTTLI GL 
Sbjct: 312 FEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 370

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A  +F++M +          PD +TYS + DGLC  G ++KA E+F  M+   
Sbjct: 371 HDGDCDNAQKVFKQMVSDG------VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 424

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I  D+  YT++I G C A   ++   LF  +  +GV+PNVVT+N +++ LC    + EA 
Sbjct: 425 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 484

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
            LL+ M + G  PD+  YNTL+      G    + EL   M S   + D  + G++ N
Sbjct: 485 ALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVAN 542



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 118/267 (44%), Gaps = 30/267 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L      +   D    +F+ + S   FPDL TYN LI  FCK  RV  G  +
Sbjct: 287 PDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 346

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       D VT+T+LI+GL  +     A  +F ++ + G  PD+ TY+ L++GLC 
Sbjct: 347 FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 406

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----------------------------CKPDAIT 165
            G    AL +F+ M     +  +                               KP+ +T
Sbjct: 407 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 466

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+  GLC +  + +A  L  KMK++   PD  TY +LIR      D   +  L  EM 
Sbjct: 467 YNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMR 526

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEA 252
                 +  T  ++ N L  +G++D++
Sbjct: 527 SCRFVGDASTIGLVANML-HDGRLDKS 552



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +++IL   L  N   +  L +F  +    +  D+Y Y  +I   CK G+V  G+ 
Sbjct: 391 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 450

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      P+ VT+ ++I GLC++  + EA AL  K++  G  PD  TY TLI    
Sbjct: 451 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHL 510

Query: 134 RTGHTIVALNLFEEM 148
           R G    +  L  EM
Sbjct: 511 RDGDKAASAELIREM 525



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 39/179 (21%)

Query: 204 LIRGFCYANDW--NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD----------- 250
           L  G  +  D   ++A  LF  M+     P++  FN +++ + K  K D           
Sbjct: 11  LFVGISWGKDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKM 70

Query: 251 --------------------------EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
                                     +A  L++ M+++G RPD   + TL+ G  L  + 
Sbjct: 71  MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 130

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + A  L   M   GC  ++ +YG+++NG CK  +I+ A +L ++M +  I   VV +NT
Sbjct: 131 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNT 189


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 199/368 (54%), Gaps = 30/368 (8%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  ML MHP PPP+  F  L   +AK KHY TVLSL K+++S G+ PD+YT  I+IN FC
Sbjct: 44  FHRMLHMHP-PPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFC 102

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV     VL +IL+    PD  TFT+L++GLC   +I EA  +F K+   G +P+V 
Sbjct: 103 HLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVV 162

Query: 124 TYTTLINGLCRTGHTIVALNLFEEM-ANG--------NGEFGVVCK-------------- 160
           TY TL+NGLC+      ALNLF EM A G        N     +C               
Sbjct: 163 TYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM 222

Query: 161 ------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
                 P+ ++ + + D LCKEG V +A ++   M    + PDVVTY +L+ G C  ++ 
Sbjct: 223 VKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEM 282

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           +EA  +F  M+  G   NVV++N ++N  CK  ++D+A  L E M +  + P+   Y+TL
Sbjct: 283 DEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTL 342

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + G C  GR+  A  LF  M + G + ++ +Y IL++  CKN  +  A++L   +    +
Sbjct: 343 IHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNL 402

Query: 335 RPTVVTYN 342
            P V  YN
Sbjct: 403 DPDVQVYN 410



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 165/326 (50%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L     +  V +L   +    + P++ + NI+++  CK G+V+    V
Sbjct: 194 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDV 253

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +++    PD VT+ +L+ G C  S + EA  +F  +   GC  +V +Y TLING C+
Sbjct: 254 VDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCK 313

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ LFEEM            P+ +TYST+  GLC  G +  A  LF +M     
Sbjct: 314 IQRIDKAMYLFEEMCRQE------LIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQ 367

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++VTY+ L+   C  +   EA  L   +    + P+V  +N+ ++ +C+ G ++ A  
Sbjct: 368 IPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARD 427

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++PD   +N ++ G C  G ++ A +LF  M+ NGC+R+  +Y  +  G  
Sbjct: 428 LFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLL 487

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           +N +   A+ L  EML++G    V T
Sbjct: 488 QNNKTSRAIQLLEEMLARGFSADVST 513



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 121/254 (47%), Gaps = 7/254 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R +     V S+N L     K +  D  + LF+ +    L P+  TY+ LI+  
Sbjct: 288 VFDMMVR-NGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGL 346

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +GR+     +   ++     P+ VT++ L+  LC   R+ EA AL   +      PDV
Sbjct: 347 CHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDV 406

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y   I+G+CR G    A +LF  +A          +PD  T++ +  GLCK G +D+A
Sbjct: 407 QVYNIAIDGMCRAGDLEAARDLFSNLAPRG------LQPDVWTHNIMIRGLCKRGLLDEA 460

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF +M +     +  TY ++ +G    N  + A  L  EM+ +G   +V T  +++  
Sbjct: 461 SKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKM 520

Query: 243 LCKNGKMDEASRLL 256
           L  +G      ++L
Sbjct: 521 LSDDGLDQSVKQIL 534


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 194/374 (51%), Gaps = 55/374 (14%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML MHP PP    F  L   +AK KHY TVLSL  +++S G+ PD+YT NILIN FC
Sbjct: 569 FNRMLHMHP-PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFC 627

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + R+   F VL ++L+  F PD VT+ +L+ GLC             K+   G  PD+F
Sbjct: 628 HLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC-------------KMITKGISPDIF 674

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY +LI+ LC          L  EM N          P+ + +ST+ D LCKEG +  A 
Sbjct: 675 TYNSLIHALCNLCEWKHVTTLLNEMVNSK------IMPNVVVFSTVVDALCKEGMIAIAH 728

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           ++   M    + PDVVTYT+L+ G C  ++ +EA  +F  M+ +G  PNV ++N+++N  
Sbjct: 729 DVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 788

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C+  +MD+A  LLE M   G+  D   YNTL+ G C  GR+  A  LF  M ++G + D+
Sbjct: 789 CQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDL 848

Query: 304 FSYGIL-----------------------------------INGYCKNKEIEGALSLYSE 328
            +Y IL                                   I+G C+  E+E A  L+S 
Sbjct: 849 VTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSN 908

Query: 329 MLSKGIRPTVVTYN 342
           + SKG++P V TYN
Sbjct: 909 LSSKGLQPDVRTYN 922



 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 188/340 (55%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML   P PP    FN L   +AK KH+ T+LSL ++++S G+ PD+YT  I+IN  C
Sbjct: 33  FNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLC 91

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV   F  L +IL+    PDA TFT+LI+GLC E +I EA  LF K+   G +P+V 
Sbjct: 92  HLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVV 151

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLINGLC+      A N+F EM            P+ +TY+++  GLCK        
Sbjct: 152 TYGTLINGLCKDRQVTEAFNIFSEMITKG------ISPNIVTYNSLIHGLCKLCEWKHVT 205

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L  +M D  I PDV T  +++   C      EA  +   M+ +GV+PNVVT+N +M+  
Sbjct: 206 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 265

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C   ++D A ++ + M+      +   YNTL++G+C    V++A  LF  M       + 
Sbjct: 266 CLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNT 325

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  LI+G C    ++ A+SL+ EM+++G  P +VTY T
Sbjct: 326 VTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 365



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 175/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K++      ++F  + + G+ P++ TYN LI+  CK+        +
Sbjct: 148 PNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTL 207

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++ S   PD  T  +++  LC E  + EA  +   +   G +P+V TY  L++G C 
Sbjct: 208 MNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCL 267

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                VA+ +F+ M + +      C  + I+Y+T+ +G CK   VDKA  LF +M  + +
Sbjct: 268 RNEVDVAVKVFDTMVHKD------CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 321

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY +LI G C+     +A  LF EM+ +G  P++VT+  + + LCKN  +D+A  
Sbjct: 322 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMA 381

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ +      PD  +Y T++DG C  G +  A++LF ++ S G   +V++Y I+I+G C
Sbjct: 382 LLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLC 441

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +  A  L+SEM   G  P   TYN
Sbjct: 442 KQGLLAEASKLFSEMNKNGCSPNDCTYN 469



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 139/267 (52%), Gaps = 19/267 (7%)

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R+L     P  V FT L+  +          +L T++ +FG  PDV+T   LIN  C   
Sbjct: 571 RMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLR 630

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A ++  ++        +  +PD +TY T+ +GLCK             M  + I+P
Sbjct: 631 RLGYAFSVLAKL------LKLGFQPDVVTYGTLMNGLCK-------------MITKGISP 671

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D+ TY SLI   C   +W     L  EM++  + PNVV F+ +++ LCK G +  A  ++
Sbjct: 672 DIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVV 731

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           ++MI+ GV PD   Y  LMDG CL   ++ A ++F +M   GC+ +V SY ILINGYC+ 
Sbjct: 732 DMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQI 791

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + ++ A+ L  +M  +G+    VTYNT
Sbjct: 792 QRMDKAMGLLEQMSLQGLIADTVTYNT 818



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 165/340 (48%), Gaps = 7/340 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F IF  M+    SP  + ++N L   L K   +  V +L   +    + PD++T N +++
Sbjct: 170 FNIFSEMITKGISPN-IVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVD 228

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G V+    V+  ++     P+ VT+ +L+ G C  + +  A  +F  +    C  
Sbjct: 229 ALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVA 288

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V +Y TLING C+      A+ LFEEM+           P+ +TY+T+  GLC  G + 
Sbjct: 289 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQE------LTPNTVTYNTLIHGLCHVGRLQ 342

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  LF +M      PD+VTY +L    C     ++A  L   +      P++  +  I+
Sbjct: 343 DAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTIL 402

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + +C+ G++++A  L   +   G++P+   YN ++ G C  G +  A +LF  M  NGC 
Sbjct: 403 DGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCS 462

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +  +Y ++  G+ +N E    + L  EML++G    V T
Sbjct: 463 PNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST 502



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 148/291 (50%), Gaps = 10/291 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L     +  V +L   + +  + P++  ++ +++  CK G ++    V
Sbjct: 671 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV 730

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +++    PD VT+T+L+ G C  S + EA  +F  +   GC P+V +Y  LING C+
Sbjct: 731 VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ 790

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ L E+M+      G++   D +TY+T+  GLC  G +  A  LF +M     
Sbjct: 791 IQRMDKAMGLLEQMSLQ----GLIA--DTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQ 844

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY  L+   C  +   EA  L   +    +  +++ +N+ ++ +C+ G+++ A  
Sbjct: 845 IPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARD 904

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           L   +   G++PD   YN ++ G C  G ++ A +LF  M+ N    D++S
Sbjct: 905 LFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDEN----DIWS 951



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 6/277 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L          D  + +F  +       ++ +YN LIN +CK+  V     +
Sbjct: 253 PNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYL 312

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R   TP+ VT+ +LI GLC   R+ +A +LF ++ A G  PD+ TY TL + LC+
Sbjct: 313 FEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 372

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             H   A+ L + +   N +      PD   Y+TI DG+C+ G ++ A++LF  +  + +
Sbjct: 373 NRHLDKAMALLKAIEGSNWD------PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGL 426

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY  +I G C      EA  LF EM   G  PN  T+N+I     +N +      
Sbjct: 427 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIE 486

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           LLE M+  G   D S    L+      G     K++ 
Sbjct: 487 LLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL 523



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 163/390 (41%), Gaps = 72/390 (18%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M R   +P  V ++N L   L         +SLF  + + G  PDL TY  L +  
Sbjct: 312 LFEEMSRQELTPNTV-TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYL 370

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK   +     +L  I  S + PD   +T+++ G+C    + +A  LF+ L + G +P+V
Sbjct: 371 CKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNV 430

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +TY  +I+GLC+ G    A  LF EM N NG     C P+  TY+ IT G  +     + 
Sbjct: 431 WTYNIMIHGLCKQGLLAEASKLFSEM-NKNG-----CSPNDCTYNLITRGFLRNNEALRT 484

Query: 183 KELFLKMKDENINPDVVTYTSLI-------------RGFC-------------------- 209
            EL  +M     + DV T T L+             +  C                    
Sbjct: 485 IELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLF 544

Query: 210 -------------YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
                        + N  ++A   F  M+     P+ V F  ++  +    KM   S +L
Sbjct: 545 LSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSI---AKMKHYSTVL 601

Query: 257 ELMIQI---GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L  Q+   G+ PD    N L++ FC   R+  A  +   +   G   DV +YG L+NG 
Sbjct: 602 SLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGL 661

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK             M++KGI P + TYN+
Sbjct: 662 CK-------------MITKGISPDIFTYNS 678



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 152/369 (41%), Gaps = 53/369 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L   L KN+H D  ++L K +      PD+  Y  +++  C+ G +     +
Sbjct: 358 PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDL 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+  T+  +I GLC +  + EA+ LF+++   GC P+  TY  +  G  R
Sbjct: 418 FSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLR 477

Query: 135 TGHTIVALNLFEEM-ANG---------------------NGEFGVVCKPDAITYSTITDG 172
               +  + L EEM A G                          ++CKP + +  + T  
Sbjct: 478 NNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQM 537

Query: 173 LCKEGF------------------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
                                   +D A   F +M   +  P  V +T L+        +
Sbjct: 538 RSLPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHY 597

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           +    L  +M   G+ P+V T N+++N  C   ++  A  +L  ++++G +PD   Y TL
Sbjct: 598 STVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTL 657

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           M+G C              M + G   D+F+Y  LI+  C   E +   +L +EM++  I
Sbjct: 658 MNGLC-------------KMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKI 704

Query: 335 RPTVVTYNT 343
            P VV ++T
Sbjct: 705 MPNVVVFST 713



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 6/218 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L          D  + +F  +   G  P++ +YNILIN +C++ R+     +
Sbjct: 741 PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGL 800

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++       D VT+ +LI GLC   R+  A ALF ++ A G  PD+ TY  L++ LC+
Sbjct: 801 LEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCK 860

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             H   A+ L + +   N +       D + Y+   DG+C+ G ++ A++LF  +  + +
Sbjct: 861 NHHLAEAMVLLKAIEGSNLD------ADILVYNIAIDGMCRAGELEAARDLFSNLSSKGL 914

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            PDV TY  +I G C     +EA  LF +M +  +  N
Sbjct: 915 QPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSN 952


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 194/340 (57%), Gaps = 28/340 (8%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ +L      PP+  F  + G L K   Y T +SL +++   G+  +L T NILINCF 
Sbjct: 47  FNRLLHQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFS 106

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++G+    F V   IL+  + P+ +T T+LIKGLC +                       
Sbjct: 107 QLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLK----------------------V 144

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+ G    AL L   +       G + +P+ + Y+TI D +CK   V++A 
Sbjct: 145 SYGTLINGLCKVGQARAALQLLRRVD------GKLVQPNVVMYNTIIDSMCKVKLVNEAF 198

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M  E I+PDVVTY++LI GF       +A  LF +M+ + ++P+V TFN++++  
Sbjct: 199 DLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGF 258

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK+GKM E   +  +M++ G++P+   Y +LMDG+CL  +VN+A  +F +M   G   D 
Sbjct: 259 CKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDT 318

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY I+ING+CK K+++ A++L+ +M  K I P VVTY +
Sbjct: 319 QSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTS 358



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 174/328 (53%), Gaps = 14/328 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   + K K  +    L+  + S G+ PD+ TY+ LI+ F  +G++     +
Sbjct: 176 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDL 235

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     PD  TF  L+ G C + ++ E   +F  +   G KP+V TY +L++G C 
Sbjct: 236 FNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCL 295

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  MA G    GV   PD  +Y+ + +G CK   VD+A  LF KM  +NI
Sbjct: 296 VKQVNKANSIFNTMAQG----GV--NPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNI 349

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTYTSLI G C +   + A  L  EM D+GV P+++T++ I++ LCKN ++D+A  
Sbjct: 350 IPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIA 409

Query: 255 LL-ELMIQI-------GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           LL +L  Q+       G   D   Y  ++ GFC+ G  N A  L   ME NG + D  +Y
Sbjct: 410 LLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTY 469

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGI 334
            I+I    K  E + A  L  EM+++G+
Sbjct: 470 EIIILSLFKKDENDMAEKLLREMIARGL 497



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 167/331 (50%), Gaps = 14/331 (4%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K       L L +R++   + P++  YN +I+  CK+  V+  F +   +
Sbjct: 145 SYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 204

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +PD VT+++LI G     ++ +A  LF K+     KPDV+T+  L++G C+ G  
Sbjct: 205 VSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKM 264

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
                +F  M           KP+ +TY ++ DG C    V+KA  +F  M    +NPD 
Sbjct: 265 KEGKTVFAMMMKQG------IKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDT 318

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            +Y  +I GFC     +EA  LF +M  + + PNVVT+  +++ LCK+GK+  A +L++ 
Sbjct: 319 QSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDE 378

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN--------GCMRDVFSYGILI 310
           M   GV PD   Y++++D  C   +V++A  L   ++          G   DV++Y ++I
Sbjct: 379 MHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMI 438

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            G+C       AL+L S+M   G  P   TY
Sbjct: 439 QGFCVKGLFNEALALLSKMEDNGRIPDAKTY 469



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 5/230 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +F  M++    P  V   +++ G CL K    +   S+F  +   G+ PD  +YNI+IN 
Sbjct: 270 VFAMMMKQGIKPNVVTYCSLMDGYCLVK--QVNKANSIFNTMAQGGVNPDTQSYNIMING 327

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FCK+ +V     +  ++      P+ VT+TSLI GLC   +I  A  L  ++   G  PD
Sbjct: 328 FCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPD 387

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE--FGVVCKPDAITYSTITDGLCKEGFV 179
           + TY+++++ LC+      A+ L  ++ +   E  F      D   Y+ +  G C +G  
Sbjct: 388 IITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLF 447

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
           ++A  L  KM+D    PD  TY  +I      ++ + A+ L  EM+ +G+
Sbjct: 448 NEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 497


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 201/371 (54%), Gaps = 35/371 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F YM+R  P P  V  F  L G + + +  D V+SL +++    +  ++Y++ ILI CF
Sbjct: 63  LFGYMVRSRPLPC-VIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCF 121

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G+I +  F P  VTF++L+ GLC E R+ EA   F ++    CKP+V
Sbjct: 122 CSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI----CKPNV 177

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVVC------------------ 159
             +TTL+NGLCR G  + A+ L + M     +     +G +                   
Sbjct: 178 IAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRK 237

Query: 160 -------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                  KP+ + YS I DGL K+G    A+ LF +M+++ I+P++ TY  +I GFC + 
Sbjct: 238 MEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSG 297

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W+EA+ L  EM ++ + P+VVTF+V++N L K GK  EA  L   M+  G+ P+   YN
Sbjct: 298 RWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYN 357

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++DGF    R++ A+ +F  M + GC  DV ++ ILI+GYC  K ++  + L  EM  +
Sbjct: 358 SMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRR 417

Query: 333 GIRPTVVTYNT 343
           G+    +TY T
Sbjct: 418 GLVANTITYTT 428



 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 178/337 (52%), Gaps = 17/337 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F++L   L K   +     L+  +   G+ P+  TYN +I+ F K  R+     +
Sbjct: 316 PDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERM 375

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +PD +TF+ LI G C   R+ +   L  ++   G   +  TYTTLI+G C+
Sbjct: 376 FYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQ 435

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-- 192
            G+   AL+L +EM +       VC P+ +T +T+ DGLC  G +  A E+F  M+    
Sbjct: 436 LGNLNAALDLLQEMISSG-----VC-PNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKM 489

Query: 193 ---------NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                    ++ PDV TY  LI G      ++EA+ L+ EM  +G+ P+ +T+N +++ L
Sbjct: 490 DLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGL 549

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++DEA+++ + M   G  PD   + TL++G+C  GRV    E+F  M   G + + 
Sbjct: 550 CKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANA 609

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +Y  LI+G+C+   I GAL ++ EM+S G+ P  +T
Sbjct: 610 ITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTIT 646



 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 171/375 (45%), Gaps = 52/375 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+       +LF  +   G+ P+L+TYN +IN FC  GR S    +
Sbjct: 246 PNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRL 305

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +     +PD VTF+ LI  L  E +  EA  L+ ++   G  P+  TY ++I+G  +
Sbjct: 306 LREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSK 365

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F  MA         C PD IT+S + DG C    VD   +L  +M    +
Sbjct: 366 QNRLDAAERMFYLMATKG------CSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGL 419

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM----- 249
             + +TYT+LI GFC   + N A  L  EM+  GV PNVVT N +++ LC NGK+     
Sbjct: 420 VANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALE 479

Query: 250 -----------------------------------------DEASRLLELMIQIGVRPDA 268
                                                     EA  L E M   G+ PD 
Sbjct: 480 MFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDT 539

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             YN+++DG C   R++ A ++F SM S G   DV ++  LINGYCK   +   L ++ E
Sbjct: 540 ITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCE 599

Query: 329 MLSKGIRPTVVTYNT 343
           M  +GI    +TY T
Sbjct: 600 MGRRGIVANAITYRT 614



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 158/315 (50%), Gaps = 5/315 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +    +K    D    +F  + + G  PD+ T++ILI+ +C   RV  G  +
Sbjct: 351 PNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKL 410

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R     + +T+T+LI G C    +  A  L  ++ + G  P+V T  TL++GLC 
Sbjct: 411 LHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCN 470

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G    AL +F+ M     +          +PD  TY+ +  GL  EG   +A+EL+ +M
Sbjct: 471 NGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEM 530

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               + PD +TY S+I G C  +  +EA  +F  M  +G  P+VVTF  ++N  CK G++
Sbjct: 531 PHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRV 590

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +   +   M + G+  +A  Y TL+ GFC  G +N A ++F  M S+G   D  +   +
Sbjct: 591 GDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNM 650

Query: 310 INGYCKNKEIEGALS 324
           + G    +E++ A+ 
Sbjct: 651 LTGLWSKEELKRAVQ 665



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 147/293 (50%), Gaps = 17/293 (5%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P V +F+IL       K  D  + L   ++  GL  +  TY  LI+ FC++
Sbjct: 377 YLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQL 436

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--------- 116
           G ++    +L  ++ S   P+ VT  +L+ GLC   ++ +A  +F  ++           
Sbjct: 437 GNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHP 496

Query: 117 --GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
               +PDV TY  LI GL   G    A  L+EEM +     G+V  PD ITY+++ DGLC
Sbjct: 497 FNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHR----GLV--PDTITYNSVIDGLC 550

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  +D+A ++F  M  +  +PDVVT+T+LI G+C      +   +F EM  +G+  N +
Sbjct: 551 KQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAI 610

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           T+  +++  C+ G ++ A  + + MI  GV PD      ++ G      + RA
Sbjct: 611 TYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 663


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/348 (37%), Positives = 195/348 (56%), Gaps = 13/348 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDT---VLSLFKRLN---SIGLFPDLYTYN 56
           +FD +L  H  P  V +FN L   +A+ +   T    +SLF R+    S  + PDL TY+
Sbjct: 36  LFDELLP-HARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLCTYS 94

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA-ALFTKLRA 115
           IL  CFC++GR+  GF   G IL++ +  + V    L+ GLC   R+ EA   L  ++  
Sbjct: 95  ILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPE 154

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLC 174
           FGC P+V +  TL+ GLC       AL L   MA +G G     C P+ +TY+TI DGLC
Sbjct: 155 FGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGN----CTPNVVTYNTIIDGLC 210

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K   VD+A+ +   M D+ +  DVVTY+++I G C A   + A+ +   M+D+GV+P+VV
Sbjct: 211 KAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVV 270

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+N I++ LCK   +D A  +L+ MI  GV+PD   YNT++DG C    V+RA  +   M
Sbjct: 271 TYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHM 330

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                  D+ +Y  LI+GY    E +  +    EM ++G+ P VVTY+
Sbjct: 331 IDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYS 378



 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 176/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L         +  V+   + + + GL PD+ TY++L++  CK G+ +    +
Sbjct: 337 PDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKI 396

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    P+   +  L+ G  A   I +   L   + A G  P+ + +  ++    +
Sbjct: 397 FYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAK 456

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+++F  M+    + G+   PD +TY  + D LCK G VD A   F +M ++ +
Sbjct: 457 KAMIDEAMHIFSRMS----QHGL--SPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGV 510

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V + SL+ G C  + W +A+ LF EM DQGV+PNVV FN IM  LC  G++  A R
Sbjct: 511 TPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQR 570

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ M ++GVRP+   YNTL+ G CL GR + A +L   M S G   D+ SY  L+ GYC
Sbjct: 571 LIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYC 630

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   I+ A  L+ EML KG+ P  VTY+T
Sbjct: 631 KTGRIDNAYCLFREMLRKGVTPGAVTYST 659



 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 178/344 (51%), Gaps = 12/344 (3%)

Query: 4   FDYMLRMHPS---PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNI 57
            D +LR  P     P V S N L   L   K  +  L L   +   G     P++ TYN 
Sbjct: 145 MDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNT 204

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           +I+  CK   V     VL  ++      D VT++++I GLC    +  A  +   +   G
Sbjct: 205 IIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKG 264

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
            KPDV TY T+I+GLC+      A  + + M +     GV  KPD +TY+TI DGLCK  
Sbjct: 265 VKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDK----GV--KPDVVTYNTIIDGLCKAQ 318

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            VD+A  +   M D+++ PD+ TY  LI G+    +W E      EM  +G+ P+VVT++
Sbjct: 319 AVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYS 378

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           ++++ LCKNGK  EA ++   MI+ G++P+ ++Y  L+ G+   G +    +L   M +N
Sbjct: 379 LLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVAN 438

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G   + + + I++  Y K   I+ A+ ++S M   G+ P VVTY
Sbjct: 439 GISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTY 482



 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 174/322 (54%), Gaps = 6/322 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FNI+    AK    D  + +F R++  GL PD+ TY ILI+  CK+GRV    +   +++
Sbjct: 447 FNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI 506

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
               TP++V F SL+ GLC   R  +A  LF ++   G +P+V  + T++  LC  G  +
Sbjct: 507 NDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVM 566

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
           VA  L + M        V  +P+ I+Y+T+  G C  G  D+A +L   M    + PD++
Sbjct: 567 VAQRLIDSMER------VGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLI 620

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           +Y +L+RG+C     + A CLF EM+ +GV P  VT++ I+  L    +  EA  L   M
Sbjct: 621 SYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNM 680

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           I+ G + D   YN +++G C T  V+ A ++F S+ S     ++ ++ I+I+   K    
Sbjct: 681 IKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRK 740

Query: 320 EGALSLYSEMLSKGIRPTVVTY 341
           + A+ L++ + S G+ P VVTY
Sbjct: 741 KDAMDLFASIPSHGLVPNVVTY 762



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 187/362 (51%), Gaps = 41/362 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++++L   L KN        +F  +   G+ P++  Y IL++ +   G ++    +
Sbjct: 372 PDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDL 431

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +  +P+   F  ++     ++ I EA  +F+++   G  PDV TY  LI+ LC+
Sbjct: 432 LDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCK 491

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+  F +M N     GV   P+++ ++++  GLC     +KA+ELF +M D+ +
Sbjct: 492 LGRVDDAVLKFNQMIND----GVT--PNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGV 545

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV + +++   C       A+ L   M   GV+PNV+++N ++   C  G+ DEA++
Sbjct: 546 RPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQ 605

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVN----------------------------- 285
           LL++M+ +G++PD   Y+TL+ G+C TGR++                             
Sbjct: 606 LLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLF 665

Query: 286 ------RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
                  AKEL+++M  +G   D+++Y I++NG CK   ++ A  ++  + SK +RP ++
Sbjct: 666 HTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNII 725

Query: 340 TY 341
           T+
Sbjct: 726 TF 727



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 155/326 (47%), Gaps = 7/326 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ M+    +P  V  FN L   L     ++    LF  +   G+ P++  +N ++   C
Sbjct: 502 FNQMINDGVTPNSVV-FNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLC 560

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G+V     ++  + R    P+ +++ +LI G C   R  EAA L   + + G KPD+ 
Sbjct: 561 NEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLI 620

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TL+ G C+TG    A  LF EM       GV   P A+TYSTI  GL       +AK
Sbjct: 621 SYDTLLRGYCKTGRIDNAYCLFREMLRK----GVT--PGAVTYSTILQGLFHTRRFSEAK 674

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL+L M       D+ TY  ++ G C  N  +EA  +F  +  + ++PN++TF ++++ L
Sbjct: 675 ELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVL 734

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G+  +A  L   +   G+ P+   Y  +M      G ++    LF++ME +GC  D 
Sbjct: 735 FKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDS 794

Query: 304 FSYGILINGYCKNKEIEGALSLYSEM 329
                +I       EI  A +  S++
Sbjct: 795 VMLNAIIRSLLGRGEIMRAGAYLSKI 820



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 144/316 (45%), Gaps = 6/316 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  FN +   L           L   +  +G+ P++ +YN LI   C  GR      +
Sbjct: 547 PNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQL 606

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD +++ +L++G C   RI  A  LF ++   G  P   TY+T++ GL  
Sbjct: 607 LDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFH 666

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A  L+  M     ++      D  TY+ I +GLCK   VD+A ++F  +  +++
Sbjct: 667 TRRFSEAKELYLNMIKSGQQW------DIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDL 720

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+++T+T +I          +A  LF  +   G+ PNVVT+ ++M  + + G +DE   
Sbjct: 721 RPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDN 780

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M + G  PD+ + N ++      G + RA      ++      +  +  +LI+ + 
Sbjct: 781 LFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISLFS 840

Query: 315 KNKEIEGALSLYSEML 330
           + +    A SL  + L
Sbjct: 841 REEYKNHAKSLPEKYL 856



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 7/169 (4%)

Query: 182 AKELFLKMK---DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           A  LF +M       + PD+ TY+ L   FC           F  ++  G + N V  N 
Sbjct: 71  AVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQ 130

Query: 239 IMNELCKNGKMDEA-SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           ++N LC   ++DEA   LL  M + G  P+    NTL+ G C   RV  A EL  +M  +
Sbjct: 131 LLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAED 190

Query: 298 G---CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   C  +V +Y  +I+G CK + ++ A  +   M+ KG++  VVTY+T
Sbjct: 191 GGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYST 239



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 7/220 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           +C+F  MLR   +P  V    IL G L   + +     L+  +   G   D+YTYNI++N
Sbjct: 639 YCLFREMLRKGVTPGAVTYSTILQG-LFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILN 697

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK   V   F +   +      P+ +TFT +I  L    R  +A  LF  + + G  P
Sbjct: 698 GLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVP 757

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V TY  ++  + + G      NLF  M          C PD++  + I   L   G + 
Sbjct: 758 NVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSG------CTPDSVMLNAIIRSLLGRGEIM 811

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           +A     K+ + N + +  T + LI  F      N AK L
Sbjct: 812 RAGAYLSKIDEMNFSLEASTTSLLISLFSREEYKNHAKSL 851


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 205/376 (54%), Gaps = 42/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M +  P P  +  F+ L   +AK   +D V+S  +++  +G+  +LYTYNILINCF
Sbjct: 65  LFGVMAQSRPFPS-IIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCF 123

Query: 63  C----------------KMG-------------------RVSPGFVVLGRILRSCFTPDA 87
           C                K+G                   R+S    ++ +++   + PD 
Sbjct: 124 CRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDT 183

Query: 88  VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           VTFT+LI GL   ++  EA AL  ++   GC+PD+ TY  ++NGLC+ G T +ALNL  +
Sbjct: 184 VTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNK 243

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M     E  VV       YST+ D LCK    D A  LF +M+++ + P+V+TY+SLI  
Sbjct: 244 MEAAKIEANVV------IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 297

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W++A  L  +M+++ + PN+VTF+ +++   K GK+ +A +L E MI+  + P+
Sbjct: 298 LCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPN 357

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y++L++GFC+  R+  AK++   M    C+ +V +Y  LING+CK K ++  + L+ 
Sbjct: 358 IFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFR 417

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  +G+    VTY T
Sbjct: 418 EMSQRGLVGNTVTYTT 433



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 155/277 (55%), Gaps = 6/277 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  ++ +   L K +H D  L+LF  + + G+ P++ TY+ LI+C C  GR S    +L 
Sbjct: 253 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLS 312

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VTF++LI     + ++++A  L+ ++      P++FTY++LING C   
Sbjct: 313 DMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLD 372

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  + E M   +      C P+ +TY+T+ +G CK   VDK  ELF +M    +  
Sbjct: 373 RLGEAKQMLELMIRKD------CLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVG 426

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTYT+LI GF  A D + A+ +F +M+  GV PN++T+N++++ LCKNGK+ +A  + 
Sbjct: 427 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF 486

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           E + +  + PD   YN +++G C  G+       FV+
Sbjct: 487 EYLQRSTMEPDIYTYNIMIEGMCKAGKWKMGGIYFVA 523



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 163/349 (46%), Gaps = 42/349 (12%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M+ M   P  V    ++ G    NK  + V +L  R+   G  PDL TY  ++N 
Sbjct: 169 ALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAV-ALIDRMVQRGCQPDLVTYGAVVNG 227

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G       +L ++  +    + V ++++I  LC      +A  LFT++   G +P+
Sbjct: 228 LCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 287

Query: 122 VFTYTTLINGLC-----------------------------------RTGHTIVALNLFE 146
           V TY++LI+ LC                                   + G  + A  L+E
Sbjct: 288 VITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYE 347

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM   +        P+  TYS++ +G C    + +AK++   M  ++  P+VVTY +LI 
Sbjct: 348 EMIKRS------IDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLIN 401

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           GFC A   ++   LF EM  +G+  N VT+  +++   +    D A  + + M+ +GV P
Sbjct: 402 GFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHP 461

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           +   YN L+DG C  G++ +A  +F  ++ +    D+++Y I+I G CK
Sbjct: 462 NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 35/200 (17%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A  LF  M      P ++ ++ L+      N ++       +M   G+  N+ T+N+
Sbjct: 59  LDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNI 118

Query: 239 IMNELCK------------------------------NG-----KMDEASRLLELMIQIG 263
           ++N  C+                              NG     ++ +A  L++ M+++G
Sbjct: 119 LINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMG 178

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            +PD   + TL+ G  L  + + A  L   M   GC  D+ +YG ++NG CK  + + AL
Sbjct: 179 YKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLAL 238

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           +L ++M +  I   VV Y+T
Sbjct: 239 NLLNKMEAAKIEANVVIYST 258



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  ++R      + ++A  LF  M      P+++ F+ +++ + K  K D      E M 
Sbjct: 46  YREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKME 105

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
            +G+  +   YN L++ FC   R++ A  L   M   G   D+ +   L+NG+C    I 
Sbjct: 106 ILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRIS 165

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A++L  +M+  G +P  VT+ T
Sbjct: 166 DAVALVDQMVEMGYKPDTVTFTT 188



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P + ++NIL   L KN      + +F+ L    + PD+YTYNI+I   CK G+   G
Sbjct: 461 PNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMG 517


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 192/342 (56%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ML+  P  P +  F  +   +AK   +D V+ LF ++ ++G+  DLY++ ILI+
Sbjct: 600 FGLFCEMLQSRP-IPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIH 658

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CFC+  R S    +LG++++  F P  VT  SL+ G C  +R  EA +L   +   G +P
Sbjct: 659 CFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEP 718

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V  Y T+INGLC+      AL +F  M       G+V   DA+TY+T+  GLC  G   
Sbjct: 719 NVVIYNTVINGLCKNRDLNNALEIFYGMEKK----GIV--ADAVTYNTLISGLCNSGRWT 772

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  L   M    I+P+V+ +T+LI  F    +  EAK L+ EM+ + V PN++T+N ++
Sbjct: 773 DAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLI 832

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N  C  G++ +A  + +LM+  G  PD   YNTL+ GFC + RV    +LF  M   G +
Sbjct: 833 NGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLV 892

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            D F+Y  LI+GYC+  ++  A  +++ M+  G+ P +VTYN
Sbjct: 893 GDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYN 934



 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 191/339 (56%), Gaps = 6/339 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P  P V  F  L   +A  + Y+TV+   +++   G+  DLY++ ILI+CF
Sbjct: 52  LFLEMVQSQP-LPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCF 110

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  R+S    +LG++++  + P  VTF SL+ G C  +RI +A +L   +   G +P+V
Sbjct: 111 CRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNV 170

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y TLI+ LC+ G   +AL L  EM    G        D +TY+T+  GLC  G   +A
Sbjct: 171 VVYNTLIDCLCKNGDVNIALELLNEMEK-KGRLAA----DLVTYNTLLTGLCYSGEWRQA 225

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +   M    INPDV T+T+LI  F    + +EA+ L+ +M+   + PN VT+N ++N 
Sbjct: 226 ARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLING 285

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC +G++  A +  +LM   G  P+   YNTL++GFC + RV    +LF  M   G + D
Sbjct: 286 LCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGD 345

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            F+Y  LI+GYC+  ++  A  ++S M+S G+ P ++T+
Sbjct: 346 TFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITH 384



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 169/328 (51%), Gaps = 6/328 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V  +N +   L KN+  +  L +F  +   G+  D  TYN LI+  C  GR +    +
Sbjct: 718  PNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARL 777

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L  +++    P+ + FT+LI     E  ++EA  L+ ++      P++ TY +LING C 
Sbjct: 778  LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCI 837

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G    A ++F+ M +        C PD +TY+T+  G CK   V+   +LF +M  + +
Sbjct: 838  QGRLGDAKHMFDLMVSKG------CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGL 891

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              D  TY +LI G+C A   N A+ +F  M+D GV P++VT+N++++ LC NGK+++A  
Sbjct: 892  VGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALV 951

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            ++E + +  +  D   YN ++ G C   +V  A  LF S+   G   D  +Y  +I+G C
Sbjct: 952  MVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLC 1011

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +N     A  L + M   G  P+   Y+
Sbjct: 1012 RNGLRREADKLCTRMKEDGFMPSERIYD 1039



 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 169/340 (49%), Gaps = 8/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I   M+++   P  V   ++L G   +N+ +D   SL   +   G  P++  YN LI+C 
Sbjct: 122 ILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDA-FSLVASMVKSGYEPNVVVYNTLIDCL 180

Query: 63  CKMGRVSPGFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           CK G V+    +L  + +      D VT+ +L+ GLC      +AA +   +      PD
Sbjct: 181 CKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPD 240

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           VFT+T LI+   + G+   A  L+++M   +        P+ +TY+++ +GLC  G +  
Sbjct: 241 VFTFTALIDAFVKQGNLDEAQELYKQMLQSS------IGPNTVTYNSLINGLCMHGRLYH 294

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK+ F  M  +   P+VVTY +LI GFC +    +   LF  M  +G+  +  T+N +++
Sbjct: 295 AKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIH 354

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             C+ GK+  A  +   M+  GV PD   +  L+ G C+ G +  A   F  M S     
Sbjct: 355 GYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYL 414

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            + +Y I+I+G CK  ++E A  L+  +  +G++P   TY
Sbjct: 415 GIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTY 454



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 140/280 (50%), Gaps = 6/280 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N L   L  +  +     + + +    + PD++T+  LI+ F K G +     +  ++
Sbjct: 208 TYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQM 267

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L+S   P+ VT+ SLI GLC   R+  A   F  + + GC P+V TY TLING C++   
Sbjct: 268 LQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRV 327

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
              + LF+ M    G  G     D  TY+T+  G C+ G +  AK++F  M    + PD+
Sbjct: 328 EDGMKLFQRMYR-EGLVG-----DTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDI 381

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           +T+  L+ G C   +   A   F +M        +V +N++++ LCK  K++EA  L   
Sbjct: 382 ITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCR 441

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +   GV+PDA  Y  ++ G C  G    A ELF  M+ +G
Sbjct: 442 LPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDG 481



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 121/251 (48%), Gaps = 8/251 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L     K  + D    L+K++    + P+  TYN LIN  C  GR+      
Sbjct: 239 PDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKT 298

Query: 75  LGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
              +  + CF P+ VT+ +LI G C   R+ +   LF ++   G   D FTY TLI+G C
Sbjct: 299 FDLMASKGCF-PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYC 357

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   VA ++F  M +     GV   PD IT+  +  GLC  G +  A   F  M+   
Sbjct: 358 QVGKLRVAKDIFSWMVS----CGVT--PDIITHCILLHGLCVNGEIGSAMVKFNDMRSGE 411

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
               +V Y  +I G C A+   EA  LF  +  +GV+P+  T+ +++  LCKNG   EA 
Sbjct: 412 KYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREAD 471

Query: 254 RLLELMIQIGV 264
            L   M + G+
Sbjct: 472 ELFRRMKEDGI 482



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 160/421 (38%), Gaps = 96/421 (22%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K++  +  + LF+R+   GL  D +TYN LI+ +C++G++     +
Sbjct: 309 PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDI 368

Query: 75  LGRILRSCFTPDAVT-----------------------------------FTSLIKGLCA 99
              ++    TPD +T                                   +  +I GLC 
Sbjct: 369 FSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCK 428

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN------- 152
             ++ EA  LF +L   G KPD  TYT +I GLC+ G    A  LF  M           
Sbjct: 429 ADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGIICQAED 488

Query: 153 ---GEFG----------VVCK----------------PDAITYST------ITDGLCKEG 177
              GE G          ++C                  D   +S+      I      +G
Sbjct: 489 GHLGEHGTNNQVSLGTIIICPKRRRSIMESGDLYYYYSDTTLWSSLVGLIPIASSSSVKG 548

Query: 178 FVDKAKELFLKMKDENINPD---------------VVTYTSLIRGFCYANDWNEAKCLFI 222
           FV +     L + +   NP+                  Y   +R   +   +++A  LF 
Sbjct: 549 FVRR----HLLLLERGNNPESRSFSGASHHHHHHHHHHYRERLRSELHCIKFDDAFGLFC 604

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM+     P++V F  ++  + K  K D    L   M  +G+  D   +  L+  FC   
Sbjct: 605 EMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCS 664

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           R + A  L   M   G    + + G L+NG+C+    + A+SL   M   G+ P VV YN
Sbjct: 665 RFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYN 724

Query: 343 T 343
           T
Sbjct: 725 T 725



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 6/192 (3%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V ++N L     K+K  +  + LF  +   GL  D +TYN LI+ +C+ G+++    V
Sbjct: 858  PDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 917

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              R++     PD VT+  L+  LC   +I +A  +   L+      D+ TY  +I G+CR
Sbjct: 918  FNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCR 977

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  A  LF  +       GV  K DAI Y T+  GLC+ G   +A +L  +MK++  
Sbjct: 978  NDKVKEAWCLFRSLTRK----GV--KLDAIAYITMISGLCRNGLRREADKLCTRMKEDGF 1031

Query: 195  NPDVVTYTSLIR 206
             P    Y   +R
Sbjct: 1032 MPSERIYDETLR 1043



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%)

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           GF ++  + +A  LF+EM+     P+VV F  ++  +    + +      + M   G+  
Sbjct: 39  GFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISH 98

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   +  L+  FC   R++ A  +   M   G    + ++G L++G+C    I  A SL 
Sbjct: 99  DLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLV 158

Query: 327 SEMLSKGIRPTVVTYNT 343
           + M+  G  P VV YNT
Sbjct: 159 ASMVKSGYEPNVVVYNT 175



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 53/112 (47%)

Query: 14   PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
            PP + ++NIL  CL  N   +  L + + L    +  D+ TYNI+I   C+  +V   + 
Sbjct: 927  PPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWC 986

Query: 74   VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
            +   + R     DA+ + ++I GLC      EA  L T+++  G  P    Y
Sbjct: 987  LFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIY 1038


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  234 bits (598), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 199/371 (53%), Gaps = 35/371 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F YM+R  P P  V  F  L G + +    D V+SL K++  + +  + Y++ IL+ CF
Sbjct: 68  LFGYMVRSRPLPS-VIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTILMKCF 126

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G+I +  F P  VTF +L+ GLC E RI EA  LF ++    CKP+V
Sbjct: 127 CSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM----CKPNV 182

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVV----CK------------- 160
            T+TTL+NGLCR G  + A+ L + M     +     +G +    CK             
Sbjct: 183 VTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRK 242

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   P+ + Y+TI DGL K+G    A  LF++M+++ I PD+VTY  +I GFC + 
Sbjct: 243 MEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISG 302

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W++A+ L  EM+++ + P+VVTF+ ++N   K GK  EA  L + M+   + P    Y+
Sbjct: 303 RWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYS 362

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++DGFC   R++ A+ +F    + GC  D+ ++  LI GYC+ K ++  + L  EM   
Sbjct: 363 SMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEA 422

Query: 333 GIRPTVVTYNT 343
           G+    +TY T
Sbjct: 423 GLVANTITYTT 433



 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 187/372 (50%), Gaps = 47/372 (12%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           MLRM   P    SF IL  C          LS F ++  +G  P + T+N L++  C   
Sbjct: 109 MLRM---PCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVED 165

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R+S    +  ++ +    P+ VTFT+L+ GLC E R++EA AL  ++   G +P+  TY 
Sbjct: 166 RISEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYG 221

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           T+++G+C+ G T+ ALNL  +M   +        P+ + Y+TI DGL K+G    A  LF
Sbjct: 222 TIVDGMCKMGDTVSALNLLRKMEEVSHII-----PNVVIYNTIIDGLWKDGRHSDAHNLF 276

Query: 187 LKMKDENI-----------------------------------NPDVVTYTSLIRGFCYA 211
           ++M+++ I                                   NPDVVT+++LI  F   
Sbjct: 277 IEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKE 336

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
             + EA+ L+ EM+ + + P+ VT++ +++  CK  ++D A  +  L    G  PD   +
Sbjct: 337 GKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITF 396

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           NTL+ G+C   RV+   +L   M   G + +  +Y  LI+G+C+  ++  A  L  EM+S
Sbjct: 397 NTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMIS 456

Query: 332 KGIRPTVVTYNT 343
            G+ P VVT NT
Sbjct: 457 SGVCPNVVTCNT 468



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 170/375 (45%), Gaps = 52/375 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L K+  +    +LF  +    +FPD+ TYN +IN FC  GR S    +
Sbjct: 251 PNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQL 310

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD VTF++LI     E +  EA  L+ ++      P   TY+++I+G C+
Sbjct: 311 LQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCK 370

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F             C PD IT++T+  G C+   VD   +L  +M +  +
Sbjct: 371 QNRLDAAEHMFYLTPTKG------CSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGL 424

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV------------------------- 229
             + +TYT+LI GFC   D N A+ L  EM+  GV                         
Sbjct: 425 VANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALE 484

Query: 230 ---------------------QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
                                +P+V T+N+++  L   GK  EA  L E M   G+ PD 
Sbjct: 485 MFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDT 544

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y++++DG C   R++ A ++F SM S     DV ++  LI GYCK   ++  L L+ E
Sbjct: 545 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCE 604

Query: 329 MLSKGIRPTVVTYNT 343
           M  +GI    +TY T
Sbjct: 605 MGQRGIVADAITYIT 619



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 168/337 (49%), Gaps = 17/337 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L     K   +     L+  +    + P   TY+ +I+ FCK  R+     +
Sbjct: 321 PDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHM 380

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
                    +PD +TF +LI G C   R+ +   L  ++   G   +  TYTTLI+G C+
Sbjct: 381 FYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQ 440

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
            G    A +L +EM +       VC P+ +T +T+ DGLC  G +  A E+F  M+    
Sbjct: 441 VGDLNAAQDLLQEMISSG-----VC-PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 494

Query: 194 ----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                     + PDV TY  LI G      + EA+ L+ EM  +G+ P+ +T++ +++ L
Sbjct: 495 DIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL 554

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++DEA+++ + M      PD   +NTL+ G+C  G V+   ELF  M   G + D 
Sbjct: 555 CKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADA 614

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +Y  LI G+ K   I+GAL ++ EM+S G+ P  +T
Sbjct: 615 ITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTIT 651



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 170/340 (50%), Gaps = 18/340 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L +       ++L  R+   GL P+  TY  +++  CKMG       +
Sbjct: 180 PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNL 239

Query: 75  LGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L ++   S   P+ V + ++I GL  + R  +A  LF +++     PD+ TY  +ING C
Sbjct: 240 LRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFC 299

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            +G    A  L +EM            PD +T+S + +   KEG   +A+EL+ +M   +
Sbjct: 300 ISGRWSDAEQLLQEMLERK------INPDVVTFSALINAFVKEGKFFEAEELYDEMLPRS 353

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I P  VTY+S+I GFC  N  + A+ +F     +G  P+++TFN ++   C+  ++D+  
Sbjct: 354 IIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGI 413

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +LL  M + G+  +   Y TL+ GFC  G +N A++L   M S+G   +V +   L++G 
Sbjct: 414 KLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGL 473

Query: 314 CKNKEIEGALSLYSEMLSK-----------GIRPTVVTYN 342
           C N +++ AL ++  M              G+ P V TYN
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYN 513



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 165/332 (49%), Gaps = 6/332 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D ML     P  V   +++ G   +N+  D    +F    + G  PD+ T+N LI  +
Sbjct: 345 LYDEMLPRSIIPSTVTYSSMIDGFCKQNR-LDAAEHMFYLTPTKGCSPDIITFNTLIAGY 403

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  RV  G  +L  +  +    + +T+T+LI G C    +  A  L  ++ + G  P+V
Sbjct: 404 CRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNV 463

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEG 177
            T  TL++GLC  G    AL +F+ M     +          +PD  TY+ +  GL  EG
Sbjct: 464 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEG 523

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
              +A+EL+ +M    I PD +TY+S+I G C  +  +EA  +F  M  +   P+VVTFN
Sbjct: 524 KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFN 583

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            ++   CK G +D+   L   M Q G+  DA  Y TL+ GF     ++ A ++F  M S+
Sbjct: 584 TLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISS 643

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
           G   D  +   ++ G    +E+E A+++  ++
Sbjct: 644 GVYPDTITIRNMLTGLWSKEELERAVAMLEDL 675



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 154/305 (50%), Gaps = 20/305 (6%)

Query: 5   DYMLRMHPS---PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           ++M  + P+    P + +FN L     + K  D  + L   +   GL  +  TY  LI+ 
Sbjct: 378 EHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHG 437

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-------- 113
           FC++G ++    +L  ++ S   P+ VT  +L+ GLC   ++ +A  +F  +        
Sbjct: 438 FCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDID 497

Query: 114 --RAF-GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
             R F G +PDV TY  LI GL   G  + A  L+EEM +     G+V  PD ITYS++ 
Sbjct: 498 ASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMI 551

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           DGLCK+  +D+A ++F  M  ++ +PDVVT+ +LI G+C A   ++   LF EM  +G+ 
Sbjct: 552 DGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIV 611

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            + +T+  ++    K   +D A  + + MI  GV PD      ++ G      + RA  +
Sbjct: 612 ADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAM 671

Query: 291 FVSME 295
              ++
Sbjct: 672 LEDLQ 676



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 4/140 (2%)

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L  GF      ++A  LF  M+     P+V+ F  +M  + + G+ D    L + M  + 
Sbjct: 52  LQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLR 111

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           +  +A  +  LM  FC   ++  A   F  +   G    V ++  L++G C    I  AL
Sbjct: 112 MPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEAL 171

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            L+ +M     +P VVT+ T
Sbjct: 172 DLFHQM----CKPNVVTFTT 187


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 131/325 (40%), Positives = 195/325 (60%), Gaps = 8/325 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSI-GLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           FN L   L K K Y+ V+SL+  L S   + P L T++ILIN F ++G++   F +LG I
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L+  F  D    T+L+KGLC + R++EA +L  +    G + D   Y T+INGLC+ G T
Sbjct: 132 LKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKT 191

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+ +F +M        +   P+ I Y+T+ DGLCK+G VD+A  L  +M +  I  DV
Sbjct: 192 RDAIQMFPKMKK------IRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDV 245

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            +Y S+I GFC    +  A  L  EM+ +G V P+V TFN++++ LCK G++ EA  ++ 
Sbjct: 246 YSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVA 305

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
           +MI+ G +PD   YN LM+G+CL+G V  AK++F  M     + +V SY  LINGYCK +
Sbjct: 306 VMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVR 365

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYN 342
            ++ A+ L +EM +K + P  VTYN
Sbjct: 366 MVDEAMVLLTEMHNKNLVPDTVTYN 390



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 178/335 (53%), Gaps = 17/335 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N +   L K    D    L   +   G+  D+Y+YN +I+ FC +GR      +
Sbjct: 208 PNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKL 267

Query: 75  LGR-ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L   ++R    PD  TF  LI GLC   R+ EA  +   +   G KPD+ +Y  L+NG C
Sbjct: 268 LDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYC 327

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            +G    A  +F++M            P+ I+Y T+ +G CK   VD+A  L  +M ++N
Sbjct: 328 LSGSVGEAKQVFDKMVERTA------LPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKN 381

Query: 194 INPDVVTYTSLIRGFCYAN----DWNEAKCLFIEMMDQGVQP-NVVTFNVIMNELCKNGK 248
           + PD VTY  L+ G   +     +W+      +E M    QP +++T+NV++++  K+ K
Sbjct: 382 LVPDTVTYNCLLDGLSKSGRSLYEWD-----LVEAMRASGQPADLITYNVLLDDYFKHEK 436

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
            D+A  L + +I+IG+ P+   YN L+DG C +GR+  AKE+F  + + GC  ++ +Y I
Sbjct: 437 FDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNI 496

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +I+G CK   ++ A +L  +M++    P  +T++T
Sbjct: 497 MIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDT 531



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 162/306 (52%), Gaps = 5/306 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           +SL       G   D   Y  +IN  CK+G+      +  ++ +    P+ + + ++I G
Sbjct: 160 VSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDG 219

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
           LC +  + EA  L T++   G + DV++Y ++I+G C  G    A+ L +EM      + 
Sbjct: 220 LCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVY- 278

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
               PD  T++ + DGLCK G V +A  +   M      PD+V+Y +L+ G+C +    E
Sbjct: 279 ----PDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGE 334

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           AK +F +M+++   PNV+++  ++N  CK   +DEA  LL  M    + PD   YN L+D
Sbjct: 335 AKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLD 394

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G   +GR     +L  +M ++G   D+ +Y +L++ Y K+++ + AL+L+  ++  GI P
Sbjct: 395 GLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISP 454

Query: 337 TVVTYN 342
            + TYN
Sbjct: 455 NIRTYN 460



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 168/327 (51%), Gaps = 8/327 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           VC   I+ G     K  D +  +F ++  I ++P+L  YN +I+  CK G V     +  
Sbjct: 176 VCYGTIINGLCKIGKTRDAI-QMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCT 234

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRT 135
            ++ +    D  ++ S+I G C+  R   A  L  ++   G   PDV+T+  LI+GLC+ 
Sbjct: 235 EMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKL 294

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           G    A N+   M           KPD ++Y+ + +G C  G V +AK++F KM +    
Sbjct: 295 GRVSEAYNVVAVMIKRG------WKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTAL 348

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+V++Y +LI G+C     +EA  L  EM ++ + P+ VT+N +++ L K+G+      L
Sbjct: 349 PNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDL 408

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           +E M   G   D   YN L+D +    + ++A  LF  +   G   ++ +Y IL++G CK
Sbjct: 409 VEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCK 468

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +  ++ A  ++  + +KG +P + TYN
Sbjct: 469 SGRLKYAKEIFQLLSAKGCQPNIRTYN 495



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 145/265 (54%), Gaps = 6/265 (2%)

Query: 48  LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA 107
           ++PD+YT+NILI+  CK+GRVS  + V+  +++  + PD V++ +L+ G C    + EA 
Sbjct: 277 VYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAK 336

Query: 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
            +F K+      P+V +Y TLING C+      A+ L  EM N N        PD +TY+
Sbjct: 337 QVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKN------LVPDTVTYN 390

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
            + DGL K G      +L   M+      D++TY  L+  +     +++A  LF  +++ 
Sbjct: 391 CLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEI 450

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G+ PN+ T+N++++ LCK+G++  A  + +L+   G +P+   YN ++ G C  G ++ A
Sbjct: 451 GISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEA 510

Query: 288 KELFVSMESNGCMRDVFSYGILING 312
           + L   M +N  + +  ++  ++  
Sbjct: 511 EALLYKMVNNNYLPNYITFDTIVRA 535



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 127/276 (46%), Gaps = 41/276 (14%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAK----NKHYDTVLSLFKRLNSIGLFPDLYTYNIL 58
           + D M+      P V +FNIL   L K    ++ Y+ V  + KR    G  PD+ +YN L
Sbjct: 267 LLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKR----GWKPDIVSYNAL 322

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           +N +C  G V     V  +++     P+ +++ +LI G C    + EA  L T++     
Sbjct: 323 MNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNL 382

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNG------------------------ 153
            PD  TY  L++GL ++G ++   +L E M A+G                          
Sbjct: 383 VPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALA 442

Query: 154 ------EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
                 E G+   P+  TY+ + DGLCK G +  AKE+F  +  +   P++ TY  +I G
Sbjct: 443 LFQHIIEIGI--SPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHG 500

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            C     +EA+ L  +M++    PN +TF+ I+  +
Sbjct: 501 LCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRAI 536



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I P ++T++ LI  F        A  L   ++  G Q +V     +M  LC  G++ EA 
Sbjct: 101 IKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAV 160

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL   +  G R D   Y T+++G C  G+   A ++F  M+      ++  Y  +I+G 
Sbjct: 161 SLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGL 220

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK   ++ A  L +EM+  GI   V +YN+
Sbjct: 221 CKQGLVDEACGLCTEMVENGIELDVYSYNS 250


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 194/357 (54%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K +  D  + +   +   G+ PD  TYN +++ +C  G+       
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 293

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      P+ VT++SL+  LC   R  EA  +F  +   G +PD+ TY TL+ G   
Sbjct: 294 LKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYAT 353

Query: 135 TG-----HTIVALNLFEEMANGNGEFGV-VC-----------------------KPDAIT 165
            G     H ++ L +   +   +  F + +C                        P+ + 
Sbjct: 354 KGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVC 413

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y T+ D LCK G VD A   F +M DE + P+++ YTSLI G C  + W++A+ L +EM+
Sbjct: 414 YGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML 473

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D+G+  N + FN I++  CK G++ E+ +L +LM++IGV+PD   YNTL+DG CL G+++
Sbjct: 474 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 533

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A +L  SM S G   D+ +YG LINGYC+   ++ AL+L+ EM+S G+ P ++TYN
Sbjct: 534 EATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYN 590



 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 189/379 (49%), Gaps = 42/379 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P ++TY ILI
Sbjct: 42  VFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHTYAILI 99

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
            C C+ GR+  GF  LG +++  F  DA+TFT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 100 GCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGC 159

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG------------------------- 153
            PDVF+Y  L+ GLC    +  AL L   MA+  G                         
Sbjct: 160 IPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDK 219

Query: 154 ---------EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
                    + G++  PD +TYS+I   LCK   +DKA E+   M    + PD +TY S+
Sbjct: 220 AYSTYHEMLDRGIL--PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 277

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           + G+C +    EA     +M   GV+PNVVT++ +MN LCKNG+  EA ++ + M + G+
Sbjct: 278 LHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGL 337

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            PD + Y TL+ G+   G +     L   M  NG   D   + ILI  Y K ++++ A+ 
Sbjct: 338 EPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAML 397

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           ++S+M   G+ P VV Y T
Sbjct: 398 VFSKMRQHGLNPNVVCYGT 416



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 179/366 (48%), Gaps = 41/366 (11%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SPP V S+N +     K    D   S +  +   G+ PD+ TY+ +I   CK   +    
Sbjct: 197 SPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM 256

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            VL  ++++   PD +T+ S++ G C+  +  EA     K+R+ G +P+V TY++L+N L
Sbjct: 257 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYL 316

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF-------------- 178
           C+ G +  A  +F+ M     E      PD  TY T+  G   +G               
Sbjct: 317 CKNGRSTEARKIFDSMTKRGLE------PDIATYRTLLQGYATKGALVEMHALLDLMVRN 370

Query: 179 ---------------------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
                                VD+A  +F KM+   +NP+VV Y ++I   C +   ++A
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 430

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
              F +M+D+G+ PN++ +  +++ LC   K D+A  L+  M+  G+  +   +N+++D 
Sbjct: 431 MLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDS 490

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  GRV  +++LF  M   G   D+ +Y  LI+G C   +++ A  L + M+S G++P 
Sbjct: 491 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550

Query: 338 VVTYNT 343
           +VTY T
Sbjct: 551 IVTYGT 556



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 170/368 (46%), Gaps = 42/368 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             + D M+R +   P    FNIL    AK +  D  + +F ++   GL P++  Y  +I+
Sbjct: 361 HALLDLMVR-NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA--------------------- 99
             CK G V    +   +++    TP+ + +TSLI GLC                      
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 100 --------------ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
                         E R++E+  LF  +   G KPD+ TY TLI+G C  G    A  L 
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
             M +      V  KPD +TY T+ +G C+   +D A  LF +M    ++P+++TY  ++
Sbjct: 540 ASMVS------VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIIL 593

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
           +G  +      AK L++ +   G Q  + T+N+I++ LCKN   DEA R+ + +    ++
Sbjct: 594 QGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 653

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
            +   +N ++      GR++ AK+LF +  +NG + DV +Y ++     +   +E    L
Sbjct: 654 LETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDL 713

Query: 326 YSEMLSKG 333
           +  M   G
Sbjct: 714 FLSMEENG 721



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 6/249 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +  IG+ PD+ TYN LI+  C  G++     +L  ++     PD VT+ +LI G C
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYC 562

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             SR+ +A ALF ++ + G  P++ TY  ++ GL  T  T  A  L+  +     +    
Sbjct: 563 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL--- 619

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  TY+ I  GLCK    D+A  +F  +   ++  +  T+  +I         +EAK
Sbjct: 620 ---ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 676

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF      G+ P+V T++++   L + G ++E   L   M + G   D+ + N+++   
Sbjct: 677 DLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKL 736

Query: 279 CLTGRVNRA 287
              G + RA
Sbjct: 737 LQRGDITRA 745



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 129/274 (47%), Gaps = 7/274 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R+   P  +    ++ GC    K  D    L   + S+G+ PD+ TY  LIN +
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGK-MDEATKLLASMVSVGVKPDIVTYGTLINGY 561

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++ R+     +   ++ S  +P+ +T+  +++GL    R   A  L+  +   G + ++
Sbjct: 562 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLEL 621

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +++GLC+   T  AL +F+ +   + +       +  T++ +   L K G +D+A
Sbjct: 622 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKCGRMDEA 675

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K+LF       + PDV TY+ +           E   LF+ M + G   +    N I+ +
Sbjct: 676 KDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRK 735

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           L + G +  A   L ++ +     +AS  + L++
Sbjct: 736 LLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 769


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 200/370 (54%), Gaps = 30/370 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P P  +  FN L   + K K YD V+SL K++  +G+  DLYT+NI+INCF
Sbjct: 72  LFSDMVKSRPFPS-IVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCF 130

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   +VS    +LG++L+  + PD VT  SL+ G C  +R+ +A +L  K+   G KPD+
Sbjct: 131 CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDI 190

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC----------------------- 159
             Y  +I+ LC+T     A + F+E+        VV                        
Sbjct: 191 VAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSD 250

Query: 160 ------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                  P+ ITYS + D   K G V +AKELF +M   +I+PD+VTY+SLI G C  + 
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            +EA  +F  M+ +G   +VV++N ++N  CK  ++++  +L   M Q G+  +   YNT
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ GF   G V++A+E F  M+  G   D+++Y IL+ G C N E+E AL ++ +M  + 
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 334 IRPTVVTYNT 343
           +   +VTY T
Sbjct: 431 MDLDIVTYTT 440



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 169/320 (52%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L K K  +     FK +   G+ P++ TY  L+N  C   R S    +
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++   TP+ +T+++L+       +++EA  LF ++      PD+ TY++LINGLC 
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 307

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F+ M +        C  D ++Y+T+ +G CK   V+   +LF +M    +
Sbjct: 308 HDRIDEANQMFDLMVSKG------CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 361

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VTY +LI+GF  A D ++A+  F +M   G+ P++ T+N+++  LC NG++++A  
Sbjct: 362 VSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALV 421

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E M +  +  D   Y T++ G C TG+V  A  LF S+   G   D+ +Y  +++G C
Sbjct: 422 IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLC 481

Query: 315 KNKEIEGALSLYSEMLSKGI 334
               +    +LY++M  +G+
Sbjct: 482 TKGLLHEVEALYTKMKQEGL 501



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 167/325 (51%), Gaps = 14/325 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L  +  +     L   +    + P++ TY+ L++ F K G+V     +
Sbjct: 223 PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKEL 282

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    PD VT++SLI GLC   RI EA  +F  + + GC  DV +Y TLING C+
Sbjct: 283 FEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCK 342

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  + LF EM+    + G+V   + +TY+T+  G  + G VDKA+E F +M    I
Sbjct: 343 AKRVEDGMKLFREMS----QRGLV--SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 396

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD+ TY  L+ G C   +  +A  +F +M  + +  ++VT+  ++  +CK GK++EA  
Sbjct: 397 SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWS 456

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++PD   Y T+M G C  G ++  + L+  M+  G M++        +   
Sbjct: 457 LFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN--------DCTL 508

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
            + +I  +  L  +MLS G  P+++
Sbjct: 509 SDGDITLSAELIKKMLSCGYAPSLL 533



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           ++ A +LF  M      P +V +  L+        ++    L  +M   G++ ++ TFN+
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  M+++G  PD     +L++GFC   RV+ A  L   M   G
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              D+ +Y  +I+  CK K +  A   + E+  KGIRP VVTY
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTY 228



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           N+A  LF +M+     P++V FN +++ + K  K D    L + M  +G+R D   +N +
Sbjct: 67  NDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIV 126

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++ FC   +V+ A  +   M   G   D  + G L+NG+C+   +  A+SL  +M+  G 
Sbjct: 127 INCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY 186

Query: 335 RPTVVTYNT 343
           +P +V YN 
Sbjct: 187 KPDIVAYNA 195


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 194/357 (54%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K +  D  + +   +   G+ PD  TYN +++ +C  G+       
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 293

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      P+ VT++SL+  LC   R  EA  +F  +   G +PD+ TY TL+ G   
Sbjct: 294 LKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYAT 353

Query: 135 TG-----HTIVALNLFEEMANGNGEFGV-VC-----------------------KPDAIT 165
            G     H ++ L +   +   +  F + +C                        P+ + 
Sbjct: 354 KGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVC 413

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y T+ D LCK G VD A   F +M DE + P+++ YTSLI G C  + W++A+ L +EM+
Sbjct: 414 YGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML 473

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D+G+  N + FN I++  CK G++ E+ +L +LM++IGV+PD   YNTL+DG CL G+++
Sbjct: 474 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 533

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A +L  SM S G   D+ +YG LINGYC+   ++ AL+L+ EM+S G+ P ++TYN
Sbjct: 534 EATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYN 590



 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 189/379 (49%), Gaps = 42/379 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P ++TY ILI
Sbjct: 42  VFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHTYAILI 99

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
            C C+ GR+  GF  LG +++  F  DA+TFT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 100 GCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGC 159

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG------------------------- 153
            PDVF+Y  L+ GLC    +  AL L   MA+  G                         
Sbjct: 160 IPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDK 219

Query: 154 ---------EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
                    + G++  PD +TYS+I   LCK   +DKA E+   M    + PD +TY S+
Sbjct: 220 AYSTYHEMLDRGIL--PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 277

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           + G+C +    EA     +M   GV+PNVVT++ +MN LCKNG+  EA ++ + M + G+
Sbjct: 278 LHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGL 337

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            PD + Y TL+ G+   G +     L   M  NG   D   + ILI  Y K ++++ A+ 
Sbjct: 338 EPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAML 397

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           ++S+M   G+ P VV Y T
Sbjct: 398 VFSKMRQHGLNPNVVCYGT 416



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 179/366 (48%), Gaps = 41/366 (11%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SPP V S+N +     K    D   S +  +   G+ PD+ TY+ +I   CK   +    
Sbjct: 197 SPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM 256

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            VL  ++++   PD +T+ S++ G C+  +  EA     K+R+ G +P+V TY++L+N L
Sbjct: 257 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYL 316

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF-------------- 178
           C+ G +  A  +F+ M     E      PD  TY T+  G   +G               
Sbjct: 317 CKNGRSTEARKIFDSMTKRGLE------PDIATYRTLLQGYATKGALVEMHALLDLMVRN 370

Query: 179 ---------------------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
                                VD+A  +F KM+   +NP+VV Y ++I   C +   ++A
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 430

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
              F +M+D+G+ PN++ +  +++ LC   K D+A  L+  M+  G+  +   +N+++D 
Sbjct: 431 MLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDS 490

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  GRV  +++LF  M   G   D+ +Y  LI+G C   +++ A  L + M+S G++P 
Sbjct: 491 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550

Query: 338 VVTYNT 343
           +VTY T
Sbjct: 551 IVTYGT 556



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 170/368 (46%), Gaps = 42/368 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             + D M+R +   P    FNIL    AK +  D  + +F ++   GL P++  Y  +I+
Sbjct: 361 HALLDLMVR-NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA--------------------- 99
             CK G V    +   +++    TP+ + +TSLI GLC                      
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 100 --------------ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
                         E R++E+  LF  +   G KPD+ TY TLI+G C  G    A  L 
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
             M +      V  KPD +TY T+ +G C+   +D A  LF +M    ++P+++TY  ++
Sbjct: 540 ASMVS------VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIIL 593

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
           +G  +      AK L++ +   G Q  + T+N+I++ LCKN   DEA R+ + +    ++
Sbjct: 594 QGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 653

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
            +   +N ++      GR++ AK+LF +  +NG + DV +Y ++     +   +E    L
Sbjct: 654 LETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDL 713

Query: 326 YSEMLSKG 333
           +  M   G
Sbjct: 714 FLSMEENG 721



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 6/249 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +  IG+ PD+ TYN LI+  C  G++     +L  ++     PD VT+ +LI G C
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYC 562

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             SR+ +A ALF ++ + G  P++ TY  ++ GL  T  T  A  L+  +     +    
Sbjct: 563 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL--- 619

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  TY+ I  GLCK    D+A  +F  +   ++  +  T+  +I         +EAK
Sbjct: 620 ---ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 676

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF      G+ P+V T++++   L + G ++E   L   M + G   D+ + N+++   
Sbjct: 677 DLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKL 736

Query: 279 CLTGRVNRA 287
              G + RA
Sbjct: 737 LQRGDITRA 745



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 139/294 (47%), Gaps = 8/294 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R+   P  +    ++ GC    K  D    L   + S+G+ PD+ TY  LIN +
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGK-MDEATKLLASMVSVGVKPDIVTYGTLINGY 561

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++ R+     +   ++ S  +P+ +T+  +++GL    R   A  L+  +   G + ++
Sbjct: 562 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLEL 621

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +++GLC+   T  AL +F+ +   + +       +  T++ +   L K G +D+A
Sbjct: 622 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKCGRMDEA 675

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K+LF       + PDV TY+ +           E   LF+ M + G   +    N I+ +
Sbjct: 676 KDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRK 735

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG-RVNRAKELFVSME 295
           L + G +  A   L ++ +     +AS  + L++   +   +++R   L V+++
Sbjct: 736 LLQRGDITRAGTYLFMIDEKHFSLEASTASFLLESSPIVWEQISRISHLSVNLK 789


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 200/370 (54%), Gaps = 30/370 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P P  +  FN L   + K K YD V+SL K++  +G+  DLYT+NI+INCF
Sbjct: 72  LFSDMVKSRPFPS-IVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCF 130

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   +VS    +LG++L+  + PD VT  SL+ G C  +R+ +A +L  K+   G KPD+
Sbjct: 131 CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDI 190

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC----------------------- 159
             Y  +I+ LC+T     A + F+E+        VV                        
Sbjct: 191 VAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSD 250

Query: 160 ------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                  P+ ITYS + D   K G V +AKELF +M   +I+PD+VTY+SL+ G C  + 
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDR 310

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            +EA  +F  M+ +G   +VV++N ++N  CK  ++++  +L   M Q G+  +   YNT
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ GF   G V++A+E F  M+  G   D+++Y IL+ G C N E+E AL ++ +M  + 
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 334 IRPTVVTYNT 343
           +   +VTY T
Sbjct: 431 MDLDIVTYTT 440



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 169/320 (52%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L K K  +     FK +   G+ P++ TY  L+N  C   R S    +
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++   TP+ +T+++L+       +++EA  LF ++      PD+ TY++L+NGLC 
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCL 307

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F+ M +        C  D ++Y+T+ +G CK   V+   +LF +M    +
Sbjct: 308 HDRIDEANQMFDLMVSKG------CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGL 361

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VTY +LI+GF  A D ++A+  F +M   G+ P++ T+N+++  LC NG++++A  
Sbjct: 362 VSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALV 421

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E M +  +  D   Y T++ G C TG+V  A  LF S+   G   D+ +Y  +++G C
Sbjct: 422 IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLC 481

Query: 315 KNKEIEGALSLYSEMLSKGI 334
               +    +LY++M  +G+
Sbjct: 482 TKGLLHEVEALYTKMKQEGL 501



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 167/325 (51%), Gaps = 14/325 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L  +  +     L   +    + P++ TY+ L++ F K G+V     +
Sbjct: 223 PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKEL 282

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    PD VT++SL+ GLC   RI EA  +F  + + GC  DV +Y TLING C+
Sbjct: 283 FEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCK 342

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  + LF EM+    + G+V   + +TY+T+  G  + G VDKA+E F +M    I
Sbjct: 343 AKRVEDGMKLFREMS----QRGLV--SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 396

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD+ TY  L+ G C   +  +A  +F +M  + +  ++VT+  ++  +CK GK++EA  
Sbjct: 397 SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWS 456

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++PD   Y T+M G C  G ++  + L+  M+  G M++        +   
Sbjct: 457 LFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN--------DCTL 508

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
            + +I  +  L  +MLS G  P+++
Sbjct: 509 SDGDITLSAELIKKMLSCGYAPSLL 533



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           ++ A +LF  M      P +V +  L+        ++    L  +M   G++ ++ TFN+
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C   ++  A  +L  M+++G  PD     +L++GFC   RV+ A  L   M   G
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              D+ +Y  +I+  CK K +  A   + E+  KGIRP VVTY
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTY 228



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           N+A  LF +M+     P++V FN +++ + K  K D    L + M  +G+R D   +N +
Sbjct: 67  NDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIV 126

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++ FC   +V+ A  +   M   G   D  + G L+NG+C+   +  A+SL  +M+  G 
Sbjct: 127 INCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY 186

Query: 335 RPTVVTYNT 343
           +P +V YN 
Sbjct: 187 KPDIVAYNA 195


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 197/340 (57%), Gaps = 10/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P  P +  F+ +   +AK+K+YD V+SLF  +   G+  DLY+YNI+INC 
Sbjct: 56  LFCKMIQSRP-LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCL 114

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  R      V+G++++  + PD VT +SLI G C  +R+ +A  L +K+   G +PDV
Sbjct: 115 CRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDV 174

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y T+I+G C+ G    A+ LF+ M       GV  + DA+TY+++  GLC  G    A
Sbjct: 175 VIYNTIIDGSCKIGLVNDAVELFDRMERD----GV--RADAVTYNSLVAGLCCSGRWSDA 228

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M   +I P+V+T+T++I  F     ++EA  L+ EM  + V P+V T+N ++N 
Sbjct: 229 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 288

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC +G++DEA ++L+LM+  G  PD   YNTL++GFC + RV+   +LF  M   G + D
Sbjct: 289 LCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 348

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  +I GY +    + A  ++S M S   RP + TY+
Sbjct: 349 TITYNTIIQGYFQAGRPDAAQEIFSRMDS---RPNIRTYS 385



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 177/362 (48%), Gaps = 39/362 (10%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M++    P  V   +++ G    N+ +D +  L  ++  +G  PD+  YN +I+  CK+G
Sbjct: 130 MMKFGYEPDVVTVSSLINGFCQGNRVFDAI-DLVSKMEEMGFRPDVVIYNTIIDGSCKIG 188

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V+    +  R+ R     DAVT+ SL+ GLC   R  +AA L   +      P+V T+T
Sbjct: 189 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFT 248

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            +I+   + G    A+ L+EEM            PD  TY+++ +GLC  G VD+AK++ 
Sbjct: 249 AVIDVFVKEGKFSEAMKLYEEMTRR------CVDPDVFTYNSLINGLCMHGRVDEAKQML 302

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV----------------- 229
             M  +   PDVVTY +LI GFC +   +E   LF EM  +G+                 
Sbjct: 303 DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQA 362

Query: 230 ---------------QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
                          +PN+ T+++++  LC N ++++A  L E M +  +  D + YN +
Sbjct: 363 GRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIV 422

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + G C  G V  A +LF S+   G   DV SY  +I+G+C+ ++ + +  LY +M   G+
Sbjct: 423 IHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 482

Query: 335 RP 336
            P
Sbjct: 483 LP 484



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T+ST    +  E  +D    LF KM      P +V ++ ++     + +++    LF  M
Sbjct: 40  TFSTKRSSMNLEEEID----LFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHM 95

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
              G+  ++ ++N+++N LC+  +   A  ++  M++ G  PD    ++L++GFC   RV
Sbjct: 96  EVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRV 155

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A +L   ME  G   DV  Y  +I+G CK   +  A+ L+  M   G+R   VTYN+
Sbjct: 156 FDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNS 214


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 198/371 (53%), Gaps = 34/371 (9%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           +  +  ML    SP  V ++N +   L+K +  D  + +     ++ + P+ +TYN +++
Sbjct: 31  YITYHEMLDRRVSPDAV-TYNSIIAALSKAQAMDRAMEVL----TVMVMPNCFTYNSIMH 85

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +C  G+      +  ++      PD VT+ SL+  LC   +  EA  +F  +   G KP
Sbjct: 86  GYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKP 145

Query: 121 DVFTYTTLINGLCRTG-----HTIVALNLFEEMANGNGEFGV-VCK-------------- 160
           D+ TY TL++G    G     H ++AL +   M   +  F + +C               
Sbjct: 146 DITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVF 205

Query: 161 ---------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    P+A+ Y T+ DGLCK G +D A   F +M D+ + P+VV YTSLI   C  
Sbjct: 206 SKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTY 265

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           + W +A+ L  E++DQG+ PN+V FN I++ LCK G++ E+ +L +L+  IGV PD   Y
Sbjct: 266 DKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITY 325

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           +TL+DG+CL G+++ A +L   M S G   D  +Y  LINGYCK   +E AL+L+ EM S
Sbjct: 326 STLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMES 385

Query: 332 KGIRPTVVTYN 342
            G+ P ++TYN
Sbjct: 386 NGVNPDIITYN 396



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 163/318 (51%), Gaps = 9/318 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M++     P + ++  L    A       +  L   +   G+  D + +NILI  +
Sbjct: 134 IFDSMVK-RGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAY 192

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K  +V    +V  ++ +   TP+AV + ++I GLC   R+ +A   F ++   G  P+V
Sbjct: 193 TKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNV 252

Query: 123 FTYTTLINGLCRTGHTIVALNL-FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             YT+LI+ LC       A  L FE +  G         P+ + ++TI D LCKEG V +
Sbjct: 253 VVYTSLIHALCTYDKWEKAEELIFEILDQG-------INPNIVFFNTILDSLCKEGRVIE 305

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           +K+LF  +    +NPDV+TY++LI G+C A   + A  L   M+  G++P+ VT++ ++N
Sbjct: 306 SKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLIN 365

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK  +M++A  L + M   GV PD   YN ++ G   T R   AKEL+  +  +G   
Sbjct: 366 GYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQL 425

Query: 302 DVFSYGILINGYCKNKEI 319
           ++ +Y I++  + K   +
Sbjct: 426 ELSTYNIILMDFAKTNSL 443



 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 149/294 (50%), Gaps = 10/294 (3%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD+ +YN +I+   K G V   ++    +L    +PDAVT+ S+I  L     +  A  +
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
            T +      P+ FTY ++++G C +G +  A+ +F +M +   E      PD +TY+++
Sbjct: 69  LTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIE------PDVVTYNSL 118

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            D LCK G   +A+++F  M    + PD+ TY +L+ G+       E   L   M+  G+
Sbjct: 119 MDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGM 178

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           Q +   FN+++    K  K+DE   +   M Q G+ P+A  Y T++DG C  GR++ A  
Sbjct: 179 QLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAML 238

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            F  M   G   +V  Y  LI+  C   + E A  L  E+L +GI P +V +NT
Sbjct: 239 NFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNT 292



 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 10/226 (4%)

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           C PDV +Y T+I+GL + G    A   + EM +          PDA+TY++I   L K  
Sbjct: 7   CPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRR------VSPDAVTYNSIIAALSKAQ 60

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            +D+A E+   M    + P+  TY S++ G+C +    +A  +F +M   G++P+VVT+N
Sbjct: 61  AMDRAMEVLTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYN 116

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +M+ LCKNGK  EA ++ + M++ G++PD + Y TL+ G+   G +    +L   M  N
Sbjct: 117 SLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQN 176

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   D   + ILI  Y K ++++  + ++S+M  +G+ P  V Y T
Sbjct: 177 GMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRT 222



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 3/145 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +FD +  +  +P  +    ++ G CLA     D  + L   + S+GL PD  TY+ LIN 
Sbjct: 309 LFDLLGHIGVNPDVITYSTLIDGYCLAGK--MDGAMKLLTGMVSVGLKPDSVTYSTLING 366

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +CK+ R+     +   +  +   PD +T+  ++ GL    R   A  L+ ++   G + +
Sbjct: 367 YCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLE 426

Query: 122 VFTYTTLINGLCRTGHTIVALNLFE 146
           + TY  ++    +T   ++    F 
Sbjct: 427 LSTYNIILMDFAKTNSLMMHFGCFR 451


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 176/327 (53%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L  CL K   +D  L L   +   G  PD+ TYN LI+   K GR+S  F +
Sbjct: 77  PNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTL 136

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD  T+ SLI GL    R  +A  L  ++   GC PDV TY++LI GL +
Sbjct: 137 FAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGK 196

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T+ A  LF+EM           KPD+IT++ + D L K G VD A EL  +MK+  +
Sbjct: 197 DGETVKAFKLFQEMKRRGR------KPDSITFTALMDALGKAGRVDDALELLDEMKERGV 250

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VVTY +LI GF    D  EA  L  EM   G +P+VVT++ ++  L K  ++DEA +
Sbjct: 251 KPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQ 310

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+ M + G  PD   YNTL++G    G +N A  LF  M+S GC  DV +Y  LI    
Sbjct: 311 VLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALG 370

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K   +E A  L+ EM S GI+P + TY
Sbjct: 371 KAARVESACVLFEEMESVGIQPDLFTY 397



 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 166/326 (50%), Gaps = 6/326 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +  H  PP V +++ L   L K+        LF+ +   G  PD  T+  L++   K GR
Sbjct: 175 MERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGR 234

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +L  +      P  VT+ +LI G      ++EA  L  +++  GCKPDV TY+ 
Sbjct: 235 VDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSC 294

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI GL +      A  + ++M          C PD ITY+T+ +GL K G ++ A  LF 
Sbjct: 295 LITGLIKASQLDEACQVLKKMEKEG------CPPDTITYNTLINGLGKAGLLNDAGRLFD 348

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +MK +  NPDVVTY++LI     A     A  LF EM   G+QP++ T+  I+  L K G
Sbjct: 349 RMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAG 408

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           ++D+A RL   M   G+ PD   YN  ++     GR   A+++F  M+ +G + DV +Y 
Sbjct: 409 QVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYD 468

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKG 333
            L+ G  K KE++ A  L  E++ +G
Sbjct: 469 ALLLGLSKTKEVDDACGLLKELIEQG 494



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 172/336 (51%), Gaps = 7/336 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           ++  PSP  V ++N L   LAK    +    LF+ L +    PD+ +Y+ LIN   + G+
Sbjct: 1   MKGFPSPN-VVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGK 59

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 V+  +      P+  T+ +L+  L    +  EA  L  ++R  GC PDV TY  
Sbjct: 60  WEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNC 119

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+ L + G    A  LF EM     E G  C PD  TY+++  GL K G   KA EL  
Sbjct: 120 LISTLGKAGRLSEAFTLFAEMR----ERG--CVPDTFTYNSLIYGLGKVGRSQKAMELLE 173

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M+     PDV+TY+SLI G     +  +A  LF EM  +G +P+ +TF  +M+ L K G
Sbjct: 174 EMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAG 233

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           ++D+A  LL+ M + GV+P    YN L+ GF   G +  A  L   M+ NGC  DV +Y 
Sbjct: 234 RVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYS 293

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LI G  K  +++ A  +  +M  +G  P  +TYNT
Sbjct: 294 CLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNT 329



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 174/375 (46%), Gaps = 35/375 (9%)

Query: 4   FDYMLRMHPS------PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNI 57
           FD  LR+          P V ++N L   L K        +LF  +   G  PD +TYN 
Sbjct: 95  FDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNS 154

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           LI    K+GR      +L  + R    PD +T++SLI GL  +   ++A  LF +++  G
Sbjct: 155 LIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRG 214

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV------------------- 158
            KPD  T+T L++ L + G    AL L +EM     + GVV                   
Sbjct: 215 RKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAY 274

Query: 159 ----------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                     CKPD +TYS +  GL K   +D+A ++  KM+ E   PD +TY +LI G 
Sbjct: 275 NLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGL 334

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
             A   N+A  LF  M  +G  P+VVT++ ++  L K  +++ A  L E M  +G++PD 
Sbjct: 335 GKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDL 394

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y +++      G+V+ A  LF  M   G   DV +Y   +N   +    + A  ++ +
Sbjct: 395 FTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFED 454

Query: 329 MLSKGIRPTVVTYNT 343
           M   G+ P V TY+ 
Sbjct: 455 MKESGLLPDVATYDA 469



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 170/342 (49%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + + D M R +   P V +++ L   L K    D    + K++   G  PD  TYN LIN
Sbjct: 274 YNLLDEMKR-NGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLIN 332

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K G ++    +  R+      PD VT+++LI  L   +R+  A  LF ++ + G +P
Sbjct: 333 GLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQP 392

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+FTY ++I  L + G    A  LF EM  G G       PD ITY+   + L + G   
Sbjct: 393 DLFTYCSIITVLGKAGQVDDADRLFSEM-RGKG-----LSPDVITYNAFLNSLGRGGRFK 446

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A+++F  MK+  + PDV TY +L+ G     + ++A  L  E+++QG   + + F+  +
Sbjct: 447 EARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECL 506

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             L   G +DEA  LL+     G+ P AS YN L+D     GRV+ A      ++  G  
Sbjct: 507 EILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGK 566

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            D+ SY  LI+   +  +I+ A  L  EM  +G++ +  +Y+
Sbjct: 567 PDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYS 608



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 119/279 (42%), Gaps = 40/279 (14%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M +     P V +++ L   L K    ++   LF+ + S+G+ PDL+TY  +I   
Sbjct: 346 LFDRM-KSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVL 404

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G+V     +   +     +PD +T+ + +  L    R  EA  +F  ++  G  PDV
Sbjct: 405 GKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDV 464

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM---------------------------------- 148
            TY  L+ GL +T     A  L +E+                                  
Sbjct: 465 ATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQF 524

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           AN  G +     P A +Y+ + D L K G V +A      +K++   PD+V+Y+SLI   
Sbjct: 525 ANSKGLW-----PGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISAL 579

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
                 + A  L  EM  +G++ +  +++ ++ +L   G
Sbjct: 580 GQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQDWG 618


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 189/341 (55%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F +M+   P P  +  F  L   +AK K +D V++L K L  +G+  DLYT N+L+NCF
Sbjct: 58  LFSHMVESRPLPS-IIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCF 116

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  +       LG++++  F PD  TFTSLI G C  +RI EA ++  ++   G KPDV
Sbjct: 117 CQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDV 176

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YTT+I+ LC+ GH   AL+LF +M N    +G+  +PD + Y+++ +GLC  G    A
Sbjct: 177 VIYTTIIDSLCKNGHVDNALSLFNQMEN----YGI--RPDVVMYTSLVNGLCNSGRWRDA 230

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M    I PDV+T+ +LI  F       +AK L+ EM+   + PN+ T+  ++N 
Sbjct: 231 DLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLING 290

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC  G++DEA ++  LM   G  PD   Y +L++GFC   +V  A ++F  M   G   +
Sbjct: 291 LCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGN 350

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y  LI G+    +   A  ++  M+S+G+ P + TYN 
Sbjct: 351 TITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNV 391



 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 185/332 (55%), Gaps = 9/332 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  +   L KN H D  LSLF ++ + G+ PD+  Y  L+N  C  GR     ++
Sbjct: 174 PDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLL 233

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD +TF +LI     E ++++A  L+ ++      P++FTYT+LINGLC 
Sbjct: 234 LRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCM 293

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F  M          C PD + Y+++ +G CK   V+ A ++F +M  + +
Sbjct: 294 EGRLDEARQMFYLMETKG------CFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGL 347

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + +TYT+LI+GF      N A+ +F  M+ +GV PN+ T+NV+++ LC NGK+++A  
Sbjct: 348 TGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALM 407

Query: 255 LLELMIQI---GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           + E M +    GV P+   YN L+ G C  G++ +A  +F  M+       + +Y I+I 
Sbjct: 408 IFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQ 467

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G CK  +++ AL+L+  + SKG++P VVTY T
Sbjct: 468 GMCKAGKVKDALNLFCSLPSKGVKPNVVTYTT 499



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 3/138 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI---GLFPDLYTYNILINCFCKMGRVSP 70
           PP + ++N+L  CL  N   +  L +F+ +      G+ P++ TYN+L++  C  G++  
Sbjct: 383 PPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEK 442

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
             +V G + +       +T+T +I+G+C   ++ +A  LF  L + G KP+V TYTT+I+
Sbjct: 443 ALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMIS 502

Query: 131 GLCRTGHTIVALNLFEEM 148
           GL R G  + A  LF +M
Sbjct: 503 GLFREGLMLEAHVLFRKM 520



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 89/161 (55%), Gaps = 9/161 (5%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR---SCFTPDAVTFTSLI 94
            +F  + S G+ P++ TYN+L++C C  G+V+   ++   + +       P+  T+  L+
Sbjct: 372 EVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLL 431

Query: 95  KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            GLC   ++ +A  +F  ++       + TYT +I G+C+ G    ALNLF  + +    
Sbjct: 432 HGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSK--- 488

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
            GV  KP+ +TY+T+  GL +EG + +A  LF KMK++ ++
Sbjct: 489 -GV--KPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  ++R   ++  +NEA  LF  M++    P+++ F  ++N + K  K D    L + + 
Sbjct: 39  YREILRNGLHSLQFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQ 98

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
            +GV  D    N LM+ FC + +   A      +   G   D+F++  LING+C    IE
Sbjct: 99  IMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIE 158

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A+S+ ++M+  GI+P VV Y T
Sbjct: 159 EAMSMVNQMVEMGIKPDVVIYTT 181


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 123/336 (36%), Positives = 195/336 (58%), Gaps = 10/336 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M++  P  P +  F+ +   +AK+K+YD V+SLF  +   G+  DLY+YNI+INC C+  
Sbjct: 1   MIQSRP-LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCS 59

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R      V+G++++  + PD VT +SLI G C  +R+ +A  L +K+   G +PDV  Y 
Sbjct: 60  RFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 119

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           T+I+G C+ G    A+ LF+ M       GV  + DA+TY+++  GLC  G    A  L 
Sbjct: 120 TIIDGSCKIGLVNDAVELFDRMERD----GV--RADAVTYNSLVAGLCCSGRWSDAARLM 173

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M   +I P+V+T+T++I  F     ++EA  L+ EM  + V P+V T+N ++N LC +
Sbjct: 174 RDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMH 233

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G++DEA ++L+LM+  G  PD   YNTL++GFC + RV+   +LF  M   G + D  +Y
Sbjct: 234 GRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITY 293

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +I GY +    + A  ++S M S   RP + TY+
Sbjct: 294 NTIIQGYFQAGRPDAAQEIFSRMDS---RPNIRTYS 326



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 177/362 (48%), Gaps = 39/362 (10%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M++    P  V   +++ G    N+ +D +  L  ++  +G  PD+  YN +I+  CK+G
Sbjct: 71  MMKFGYEPDVVTVSSLINGFCQGNRVFDAI-DLVSKMEEMGFRPDVVIYNTIIDGSCKIG 129

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V+    +  R+ R     DAVT+ SL+ GLC   R  +AA L   +      P+V T+T
Sbjct: 130 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFT 189

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            +I+   + G    A+ L+EEM            PD  TY+++ +GLC  G VD+AK++ 
Sbjct: 190 AVIDVFVKEGKFSEAMKLYEEMTRR------CVDPDVFTYNSLINGLCMHGRVDEAKQML 243

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV----------------- 229
             M  +   PDVVTY +LI GFC +   +E   LF EM  +G+                 
Sbjct: 244 DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQA 303

Query: 230 ---------------QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
                          +PN+ T+++++  LC N ++++A  L E M +  +  D + YN +
Sbjct: 304 GRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIV 363

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + G C  G V  A +LF S+   G   DV SY  +I+G+C+ ++ + +  LY +M   G+
Sbjct: 364 IHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 423

Query: 335 RP 336
            P
Sbjct: 424 LP 425



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 77/148 (52%)

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P +V ++ ++     + +++    LF  M   G+  ++ ++N+++N LC+  +   A  +
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           +  M++ G  PD    ++L++GFC   RV  A +L   ME  G   DV  Y  +I+G CK
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 127

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +  A+ L+  M   G+R   VTYN+
Sbjct: 128 IGLVNDAVELFDRMERDGVRADAVTYNS 155



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 40/85 (47%)

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           MIQ    P    ++ ++     +   +    LF  ME  G   D++SY I+IN  C+   
Sbjct: 1   MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 60

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
              ALS+  +M+  G  P VVT ++
Sbjct: 61  FVIALSVVGKMMKFGYEPDVVTVSS 85


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 204/368 (55%), Gaps = 41/368 (11%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +L  H SP  +  FN + G L K K+Y TV+SL K+++  G+  +L T +ILINCFC +G
Sbjct: 2   LLVRHTSP--IIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLG 59

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +++  F +LG+IL+  + P+ +T+T+L+KGLC +  + +      K+ A   + +  +Y 
Sbjct: 60  QMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYG 119

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TL+NGLC+TG T  A+ L   + + +       +P+ + YS I DGLCK+  V++A +L+
Sbjct: 120 TLLNGLCKTGETRCAIKLLRMIEDRS------TRPNVVMYSAIIDGLCKDKLVNEAYDLY 173

Query: 187 LKMKDENINPDVVTYTSLIRGFCYA---------------------------------ND 213
            +M    I P+V+TY +LI  FC A                                  +
Sbjct: 174 SEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKE 233

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
              AK +F  M+  GV PNV ++N+++N LCK  ++DEA  LL  M+   + PD   YN+
Sbjct: 234 GKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNS 293

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+DG C +GR+  A  L   M   G   DV +Y  L++  CKN+ ++ A +L+ +M  +G
Sbjct: 294 LIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERG 353

Query: 334 IRPTVVTY 341
           I+PT+ TY
Sbjct: 354 IQPTMYTY 361



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 171/328 (52%), Gaps = 8/328 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+    + P V  ++ +   L K+K  +    L+  +++  +FP++ TYN LI  FC  G
Sbjct: 140 MIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAG 199

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++   F +L  ++     PD  TF+ LI  LC E +   A  +F  +   G  P+V++Y 
Sbjct: 200 QLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYN 257

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            +INGLC+      A+NL  EM + N        PD +TY+++ DGLCK G +  A  L 
Sbjct: 258 IMINGLCKCKRVDEAMNLLREMLHKN------MVPDTVTYNSLIDGLCKSGRITSALNLM 311

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M       DVVTYTSL+   C   + ++A  LF++M ++G+QP + T+  +++ LCK 
Sbjct: 312 NEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKG 371

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G++  A  L + ++  G   D   Y  ++ G C  G  + A  +   ME NGC+ +  ++
Sbjct: 372 GRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTF 431

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGI 334
            I+I    +  E + A  L  EM++KG+
Sbjct: 432 EIIIRSLFEKDENDKAEKLLHEMIAKGL 459



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 166/323 (51%), Gaps = 8/323 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K       + L + +      P++  Y+ +I+  CK   V+  + +   +
Sbjct: 117 SYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEM 176

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ +T+ +LI   C   ++M A +L  ++      PDV+T++ LI+ LC+ G  
Sbjct: 177 DAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKN 236

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  +F  M     + GV   P+  +Y+ + +GLCK   VD+A  L  +M  +N+ PD 
Sbjct: 237 --AKQIFHAMV----QMGV--NPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDT 288

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY SLI G C +     A  L  EM  +G   +VVT+  +++ LCKN  +D+A+ L   
Sbjct: 289 VTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMK 348

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + G++P    Y  L+DG C  GR+  A+ELF  +   GC  DV++Y ++I+G CK   
Sbjct: 349 MKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGM 408

Query: 319 IEGALSLYSEMLSKGIRPTVVTY 341
            + AL++ S+M   G  P  VT+
Sbjct: 409 FDEALAIKSKMEDNGCIPNAVTF 431


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 200/363 (55%), Gaps = 27/363 (7%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ML++ P+PP +  FN +   L K  HY T +SLF++L   G+ P + T  IL+NC+C  G
Sbjct: 1   MLQISPTPP-ILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTG 59

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            ++  F +L +IL+  + P+++TFT+LIKG+C   +  EA      + A G K D  +Y 
Sbjct: 60  GITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYA 119

Query: 127 TLINGLCRTGHTIVALNLFEE-MANGN-------------GEF---------GVVCK--- 160
            L+NGLC+ G T  A+ +  +   N +             G+F          ++ K   
Sbjct: 120 ILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIF 179

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P+  T+S + D LCK+    +A  L   M  + + P+VVTY +++ G+C  N  N+A  +
Sbjct: 180 PNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNI 239

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           F  M+ +GV+PNV  +N+I+N LCK  ++DEA  L + M    + PD   YN L+DG C 
Sbjct: 240 FNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCK 299

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G+++ + EL   M S G   D+ +Y  L++  CKN  ++ A++L  E+  +GI+P V T
Sbjct: 300 LGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCT 359

Query: 341 YNT 343
           Y T
Sbjct: 360 YTT 362



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 169/328 (51%), Gaps = 6/328 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           MLR       V  ++ +   L K K       L+  + + G+FP++YT++IL++  CK  
Sbjct: 137 MLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDR 196

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +      +L  +++    P+ VT+ +++ G C  +++ +A  +F  +   G +P+V+ Y 
Sbjct: 197 KGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYN 256

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            +INGLC+      A+NLF+EM            PD +TY+ + DGLCK G +  + EL 
Sbjct: 257 IIINGLCKKKRVDEAMNLFKEMHWKK------INPDVVTYNILIDGLCKLGKISTSLELV 310

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M+      D++TY SL+   C  +  ++A  L  E+ DQG+QPNV T+  +++ LCK+
Sbjct: 311 DEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKD 370

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G++++A  + + ++  G       YN +++G C  G  + A  L   ME N C+ D  SY
Sbjct: 371 GRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSY 430

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGI 334
             +I    +  E      L   M+ +G+
Sbjct: 431 ETIIYALSEKGETVKTNKLLCAMIVRGL 458



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 163/325 (50%), Gaps = 9/325 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+ IL   L K       + + ++     +  D+  Y+ +I+  CK   V+  + +   +
Sbjct: 117 SYAILMNGLCKMGETRAAMQMLRK---TWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEM 173

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P+  TF+ L+  LC + +  +A  L   +   G KP+V TY  +++G C     
Sbjct: 174 IAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQV 233

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             ALN+F  M     E  V C      Y+ I +GLCK+  VD+A  LF +M  + INPDV
Sbjct: 234 NKALNIFNVMVQEGVEPNVWC------YNIIINGLCKKKRVDEAMNLFKEMHWKKINPDV 287

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY  LI G C     + +  L  EM   G   +++T+N +++ LCKN  +D+A  L++ 
Sbjct: 288 VTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKE 347

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           +   G++P+   Y TL+DG C  GR+  A  +F  + + G    V++Y ++ING CK   
Sbjct: 348 IKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGL 407

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
            + AL+L S M      P  V+Y T
Sbjct: 408 FDEALALLSRMEDNACIPDAVSYET 432


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 122/330 (36%), Positives = 181/330 (54%), Gaps = 6/330 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +++ L   L K    D    LF+++      PD+ T+  L++  CK  R+     
Sbjct: 179 PPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQ 238

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL  +     TP+ +T++SLI GLC   ++ +A  +F ++   G +P+V TY +LI+G C
Sbjct: 239 VLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 298

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            T     AL L EEM          C PD ITY+T+ DGLCK G   +A  LF  MK + 
Sbjct: 299 MTNGVDSALLLMEEMT------ATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKF 352

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            NPDV+TY+ LI GFC     + A+ LF +M+ Q V P+VVTF+ ++   C  G +D+A 
Sbjct: 353 CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAE 412

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RLLE M+     PD   Y +L+DGFC  GR+  A+ +   M   GC  +V +Y  LI+ +
Sbjct: 413 RLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAF 472

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C+  +   A  L  EM+  G++P V+TY +
Sbjct: 473 CRAGKPTVAYKLLEEMVGNGVQPNVITYRS 502



 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 184/329 (55%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +     +    DT   LF+++   G  P+L TYN L++  C+ G +   + +
Sbjct: 75  PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 134

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD  ++ +L+ GLC   +I  A  +F       C PDV  Y+TLI GLC+
Sbjct: 135 LDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCK 194

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    A  LFE+M   +      C+PD +T++ + DGLCK   + +A+++   M+D N 
Sbjct: 195 TGRLDEACKLFEKMRENS------CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNC 248

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V+TY+SLI G C      +A+ +F  M+ +G++PNVVT+N +++  C    +D A  
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 308

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M   G  PD   YNTL+DG C TGR   A  LF  M++  C  DV +Y  LI G+C
Sbjct: 309 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFC 368

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K + I+ A +L+ +ML + + P VVT++T
Sbjct: 369 KLERIDMARTLFDDMLKQAVLPDVVTFST 397



 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 190/328 (57%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N+L     K         L K +   GL P++ TY+ +I+ FC+  +V   + +
Sbjct: 40  PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 99

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ +   P+ VT+ +L+ GLC    + EA  L  ++R  G +PD F+Y TL+ GLC+
Sbjct: 100 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 159

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG   +AL +FE+ +NG+      C PD + YST+  GLCK G +D+A +LF KM++ + 
Sbjct: 160 TGKIDMALKVFEDNSNGD------CPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSC 213

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVT+T+L+ G C  +   EA+ +   M D+   PNV+T++ +++ LCK G++ +A  
Sbjct: 214 EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQE 273

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + MI  G+ P+   YN+L+ GFC+T  V+ A  L   M + GC+ D+ +Y  LI+G C
Sbjct: 274 VFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLC 333

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K      A  L+ +M +K   P V+TY+
Sbjct: 334 KTGRAPEANRLFGDMKAKFCNPDVITYS 361



 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 111/323 (34%), Positives = 173/323 (53%), Gaps = 7/323 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K         +FKR+   G+ P++ TYN LI+ FC    V    ++
Sbjct: 250 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 309

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  +   PD +T+ +LI GLC   R  EA  LF  ++A  C PDV TY+ LI G C+
Sbjct: 310 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 369

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                +A  LF++M            PD +T+ST+ +G C  G VD A+ L  +M   + 
Sbjct: 370 LERIDMARTLFDDM------LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDC 423

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDV TYTSL+ GFC      EA+ +   M  +G QPNVVT+  +++  C+ GK   A +
Sbjct: 424 SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYK 483

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYGILINGY 313
           LLE M+  GV+P+   Y +L+ GFC TG +  A+++   +E +  C  D+F+Y ++++G 
Sbjct: 484 LLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGL 543

Query: 314 CKNKEIEGALSLYSEMLSKGIRP 336
           C+   +  AL L   +   G  P
Sbjct: 544 CRTGRMSAALELLEAIKQSGTPP 566



 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 158/293 (53%), Gaps = 6/293 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           ++ T+ I+I+  CK  R+        ++ +    P+  T+  LI G C   ++  A  L 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            +++  G  P+V TY+T+I+G CR      A  LF +M   NG     C P+ +TY+T+ 
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE-NG-----CMPNLVTYNTLL 119

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
            GLC+ G +D+A EL  +M++  + PD  +Y +L+ G C     + A  +F +  +    
Sbjct: 120 SGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCP 179

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+VV ++ ++  LCK G++DEA +L E M +    PD   +  LMDG C   R+  A+++
Sbjct: 180 PDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQV 239

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +ME   C  +V +Y  LI+G CK  ++  A  ++  M+ +GI P VVTYN+
Sbjct: 240 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNS 292



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 158/318 (49%), Gaps = 8/318 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K         LF  + +    PD+ TY+ LI  FCK+ R+     +
Sbjct: 320 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 379

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+    PD VTF++L++G C    + +A  L  ++ A  C PDV+TYT+L++G C+
Sbjct: 380 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 439

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  + + MA         C+P+ +TY+ + D  C+ G    A +L  +M    +
Sbjct: 440 VGRMVEARRVLKRMAKRG------CQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGV 493

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            P+V+TY SLI GFC   D  EA+ +   +  D+  + ++  + V+M+ LC+ G+M  A 
Sbjct: 494 QPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 553

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME-SNGCMRDVFSYGILING 312
            LLE + Q G  P   +Y  L+ G C    + +A E+   M  S     +  +Y  +I  
Sbjct: 554 ELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQE 613

Query: 313 YCKNKEIEGALSLYSEML 330
             +    E A +L  E+L
Sbjct: 614 LAREGRHEEANALADELL 631



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 129/224 (57%), Gaps = 6/224 (2%)

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           C+ +V T+T +I+GLC+      A   F +M       G V  P+  TY+ + +G CK  
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKK----GTV--PNEWTYNVLINGFCKVH 56

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            V +A  L  +MK+  + P+VVTY+++I GFC     + A  LF +M++ G  PN+VT+N
Sbjct: 57  KVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYN 116

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +++ LC+NG MDEA  LL+ M + G++PD   Y+TLM G C TG+++ A ++F    + 
Sbjct: 117 TLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNG 176

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            C  DV +Y  LI G CK   ++ A  L+ +M      P VVT+
Sbjct: 177 DCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTF 220


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  230 bits (586), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 192/341 (56%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F +M+   P P  +  F  L   +AK K +D V++L   L  +G+  DLYT N+L+NCF
Sbjct: 59  LFTHMVESRPLPS-IIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCF 117

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  +       LG++++  F PD VTFTSLI G C  +R+ EA ++  ++   G KPDV
Sbjct: 118 CQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDV 177

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YTT+I+ LC+ GH   AL+LF++M N    +G+  +PD + Y+++ +GLC  G    A
Sbjct: 178 VMYTTIIDSLCKNGHVNYALSLFDQMEN----YGI--RPDVVMYTSLVNGLCNSGRWRDA 231

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M    I PDV+T+ +LI  F     + +A+ L+ EM+   + PN+ T+  ++N 
Sbjct: 232 DSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLING 291

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G +DEA ++  LM   G  PD   Y +L++GFC   +V+ A ++F  M   G   +
Sbjct: 292 FCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGN 351

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y  LI G+ +  +   A  ++S M+S+G+ P + TYN 
Sbjct: 352 TITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNV 392



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 179/332 (53%), Gaps = 9/332 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  +   L KN H +  LSLF ++ + G+ PD+  Y  L+N  C  GR      +
Sbjct: 175 PDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSL 234

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    PD +TF +LI     E + ++A  L+ ++      P++FTYT+LING C 
Sbjct: 235 LRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCM 294

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F  M          C PD + Y+++ +G CK   VD A ++F +M  + +
Sbjct: 295 EGCVDEARQMFYLMETKG------CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGL 348

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + +TYT+LI+GF      N A+ +F  M+ +GV PN+ T+NV+++ LC NGK+ +A  
Sbjct: 349 TGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALM 408

Query: 255 LLELMIQI---GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           + E M +    GV P+   YN L+ G C  G++ +A  +F  M        + +Y I+I 
Sbjct: 409 IFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQ 468

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G CK  +++ A++L+  + SKG++P VVTY T
Sbjct: 469 GMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTT 500



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 133/262 (50%), Gaps = 4/262 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +++ M+RM  +P  + ++  L          D    +F  + + G FPD+  Y  LIN F
Sbjct: 269 LYNEMIRMSIAPN-IFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGF 327

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  +V     +   + +   T + +T+T+LI+G     +   A  +F+ + + G  P++
Sbjct: 328 CKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNI 387

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  L++ LC  G    AL +FE+M     + GV   P+  TY+ +  GLC  G ++KA
Sbjct: 388 RTYNVLLHCLCYNGKVKKALMIFEDMQKREMD-GVA--PNIWTYNVLLHGLCYNGKLEKA 444

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +F  M+   ++  ++TYT +I+G C A     A  LF  +  +GV+PNVVT+  +++ 
Sbjct: 445 LMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISG 504

Query: 243 LCKNGKMDEASRLLELMIQIGV 264
           L + G   EA  L   M + GV
Sbjct: 505 LFREGLKHEAHVLFRKMKEDGV 526



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 32/222 (14%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P V ++  L     K K  D  + +F  ++  GL  +  TY  LI  F ++
Sbjct: 306 YLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQV 365

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF---GCKPDV 122
           G+ +    V   ++     P+  T+  L+  LC   ++ +A  +F  ++     G  P++
Sbjct: 366 GKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNI 425

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM---------------ANGNGEFGVV--------- 158
           +TY  L++GLC  G    AL +FE+M                 G  + G V         
Sbjct: 426 WTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCS 485

Query: 159 -----CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                 KP+ +TY+T+  GL +EG   +A  LF KMK++ ++
Sbjct: 486 LPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 73/143 (51%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  ++R   ++  +NEA  LF  M++    P+++ F  ++N + K  K D    L + + 
Sbjct: 40  YREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQ 99

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
            +GV  D    N LM+ FC + +   A      M   G   D+ ++  LING+C    +E
Sbjct: 100 IMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRME 159

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A+S+ ++M+  GI+P VV Y T
Sbjct: 160 EAMSMVNQMVEMGIKPDVVMYTT 182


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 196/348 (56%), Gaps = 13/348 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F  FD M+R HP PP + SFN L G LAK  HY  + SL+ ++   GL PDL+T NIL N
Sbjct: 75  FHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILAN 133

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL---CAESRIMEAAALFTKLRAFG 117
           C C + RVS G   +  ILR  + PD VT+ +LIKGL   C      EA  +F +++A G
Sbjct: 134 CLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQG 193

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
             P+V +Y++L++G C  G    +  LF EM +     GV  +P+ + ++ + D LCKEG
Sbjct: 194 MIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQ----GV--QPNLVQFNVLIDILCKEG 247

Query: 178 FV---DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
            +     A++LFL M  +    + ++YT LI G+C      EA  L+ EM   G +PNV 
Sbjct: 248 KIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVK 307

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T++ ++  L + GK+ +A++L  +M   G+  D+ +Y   +DG C  G +  A ELF  +
Sbjct: 308 TYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNEL 367

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +S     D  SY  LI+G CK  ++E A   + ++  +G++P VVT N
Sbjct: 368 KSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCN 415



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 159/323 (49%), Gaps = 49/323 (15%)

Query: 63  CKMGRVS--PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CK G +     F     ++RS   P   +F  L+ GL   +   +  +L+ K+R  G  P
Sbjct: 64  CKTGNIDVIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSP 123

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD---GLCKEG 177
           D+FT   L N LC          + E +A   G       PD +TY+T+     GLCK G
Sbjct: 124 DLFTLNILANCLCNLNR------VSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVG 177

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
             D+AKE+F +MK + + P+V++Y+SL+ GFC A    E+K LF EM+DQGVQPN+V FN
Sbjct: 178 HEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFN 237

Query: 238 VIMNELCKNGKM--------------------------------------DEASRLLELM 259
           V+++ LCK GK+                                      +EA  L   M
Sbjct: 238 VLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEM 297

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            Q+G RP+   Y+TL+ G   TG+V  A +LF  M+++G   D   Y I ++G CKN  +
Sbjct: 298 PQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVL 357

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
             A+ L++E+ S   +    +Y+
Sbjct: 358 FEAMELFNELKSYNFKLDFESYS 380



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 166/327 (50%), Gaps = 15/327 (4%)

Query: 15  PPVCSFNILFGCL---AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P + ++N L   L    K  H D    +F+ + + G+ P++ +Y+ L++ FC  G++   
Sbjct: 158 PDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEES 217

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME---AAALFTKLRAFGCKPDVFTYTTL 128
             +   ++     P+ V F  LI  LC E +I +   A  LF  + + GC+ +  +YT L
Sbjct: 218 KRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTIL 277

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           ING C+      A+NL+ EM        V  +P+  TYST+  GL + G V  A +LF  
Sbjct: 278 INGYCKIWKVEEAMNLYNEMPQ------VGKRPNVKTYSTLLTGLLQTGKVGDANKLFGV 331

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           MK   I+ D   Y   + G C      EA  LF E+     + +  +++ +++ LCK GK
Sbjct: 332 MKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGK 391

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME---SNGCMRDVFS 305
           ++ A    + + Q G++P+    N ++ GFC   +V++A  LF  ME    NGC  D+ +
Sbjct: 392 VEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIIT 451

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSK 332
           Y  L+ G+C++ ++E  ++L  +M  +
Sbjct: 452 YNTLLRGFCESNKLEEVVNLLHKMFKR 478



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 244 CKNGKMD--EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           CK G +D  +A    +LM++    P  S +N L+ G       ++   L+  M   G   
Sbjct: 64  CKTGNIDVIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSP 123

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D+F+  IL N  C    +   L+  + +L +G  P +VTYNT
Sbjct: 124 DLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNT 165


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 190/328 (57%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N+L     K         L K +   GL P++ TY+ +I+ FC+  +V   + +
Sbjct: 159 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 218

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ +   P+ VT+ +L+ GLC    + EA  L  ++R  G +PD F+Y TL+ GLC+
Sbjct: 219 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 278

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG   +AL +FE+ +NG+      C PD + YST+  GLCK G +D+A +LF KM++ + 
Sbjct: 279 TGKIDMALKVFEDNSNGD------CPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSC 332

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVT+T+L+ G C  +   EA+ +   M D+   PNV+T++ +++ LCK G++ +A  
Sbjct: 333 EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQE 392

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + MI  G+ P+   YN+L+ GFC+T  V+ A  L   M + GC+ D+ +Y  LI+G C
Sbjct: 393 VFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLC 452

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K      A  L+ +M +K   P V+TY+
Sbjct: 453 KTGRAPEANRLFGDMKAKFCNPDVITYS 480



 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 122/330 (36%), Positives = 181/330 (54%), Gaps = 6/330 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +++ L   L K    D    LF+++      PD+ T+  L++  CK  R+     
Sbjct: 298 PPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQ 357

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL  +     TP+ +T++SLI GLC   ++ +A  +F ++   G +P+V TY +LI+G C
Sbjct: 358 VLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 417

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            T     AL L EEM          C PD ITY+T+ DGLCK G   +A  LF  MK + 
Sbjct: 418 MTNGVDSALLLMEEMT------ATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKF 471

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            NPDV+TY+ LI GFC     + A+ LF +M+ Q V P+VVTF+ ++   C  G +D+A 
Sbjct: 472 CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAE 531

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RLLE M+     PD   Y +L+DGFC  GR+  A+ +   M   GC  +V +Y  LI+ +
Sbjct: 532 RLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAF 591

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C+  +   A  L  EM+  G++P V+TY +
Sbjct: 592 CRAGKPTVAYRLLEEMVGNGVQPNVITYRS 621



 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 183/329 (55%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +     +    DT   LF+++   G  P+L TYN L++  C+ G +   + +
Sbjct: 194 PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 253

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD  ++ +L+ GLC   +I  A  +F       C PDV  Y+TLI GLC+
Sbjct: 254 LDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCK 313

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  LFE+M   +      C+PD +T++ + DGLCK   + +A+++   M+D N 
Sbjct: 314 AGRLDEACKLFEKMRENS------CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNC 367

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V+TY+SLI G C      +A+ +F  M+ +G++PNVVT+N +++  C    +D A  
Sbjct: 368 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 427

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M   G  PD   YNTL+DG C TGR   A  LF  M++  C  DV +Y  LI G+C
Sbjct: 428 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFC 487

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K + I+ A +L+ +ML + + P VVT++T
Sbjct: 488 KLERIDMARTLFDDMLKQAVLPDVVTFST 516



 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 173/323 (53%), Gaps = 7/323 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K         +FKR+   G+ P++ TYN LI+ FC    V    ++
Sbjct: 369 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 428

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  +   PD +T+ +LI GLC   R  EA  LF  ++A  C PDV TY+ LI G C+
Sbjct: 429 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 488

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                +A  LF++M            PD +T+ST+ +G C  G VD A+ L  +M   + 
Sbjct: 489 LERIDMARTLFDDM------LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDC 542

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDV TYTSL+ GFC      EA+ +   M  +G QPNVVT+  +++  C+ GK   A R
Sbjct: 543 SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYR 602

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYGILINGY 313
           LLE M+  GV+P+   Y +L+ GFC TG +  A+++   +E +  C  D+F+Y ++++G 
Sbjct: 603 LLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGL 662

Query: 314 CKNKEIEGALSLYSEMLSKGIRP 336
           C+   +  AL L   +   G  P
Sbjct: 663 CRTGRMSAALELLEAIKQSGTPP 685



 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 173/325 (53%), Gaps = 9/325 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N LF  L + +  D    + K     G+ P+++TY ++I   CK G +     +L 
Sbjct: 24  VYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLE 83

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +  S   PDA  +  +I  LC      +A   F   R+  C+ +V T+T +I+GLC+  
Sbjct: 84  EMRESGPVPDAAIYNFVIHALCKARNTAKALDYF---RSMECEKNVITWTIMIDGLCKAN 140

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A   F +M       G V  P+  TY+ + +G CK   V +A  L  +MK+  + P
Sbjct: 141 RLPEATTYFAKMKKK----GTV--PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAP 194

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +VVTY+++I GFC     + A  LF +M++ G  PN+VT+N +++ LC+NG MDEA  LL
Sbjct: 195 NVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELL 254

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M + G++PD   Y+TLM G C TG+++ A ++F    +  C  DV +Y  LI G CK 
Sbjct: 255 DEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKA 314

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
             ++ A  L+ +M      P VVT+
Sbjct: 315 GRLDEACKLFEKMRENSCEPDVVTF 339



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 171/361 (47%), Gaps = 38/361 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC------------- 61
           P V ++ ++   L K+   D    L + +   G  PD   YN +I+              
Sbjct: 57  PNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDY 116

Query: 62  -------------------FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
                               CK  R+        ++ +    P+  T+  LI G C   +
Sbjct: 117 FRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHK 176

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           +  A  L  +++  G  P+V TY+T+I+G CR      A  LF +M   NG     C P+
Sbjct: 177 VHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE-NG-----CMPN 230

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TY+T+  GLC+ G +D+A EL  +M++  + PD  +Y +L+ G C     + A  +F 
Sbjct: 231 LVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFE 290

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           +  +    P+VV ++ ++  LCK G++DEA +L E M +    PD   +  LMDG C   
Sbjct: 291 DNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGD 350

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           R+  A+++  +ME   C  +V +Y  LI+G CK  ++  A  ++  M+ +GI P VVTYN
Sbjct: 351 RLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYN 410

Query: 343 T 343
           +
Sbjct: 411 S 411



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 154/311 (49%), Gaps = 10/311 (3%)

Query: 34  DTVLSLFKRLN-SIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           D  L  F   +   G   ++YTYN L     +  R+     +L        TP+  T+  
Sbjct: 5   DAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAV 64

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           +I+GLC    + +A  L  ++R  G  PD   Y  +I+ LC+  +T  AL+ F  M    
Sbjct: 65  VIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME--- 121

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                 C+ + IT++ + DGLCK   + +A   F KMK +   P+  TY  LI GFC  +
Sbjct: 122 ------CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVH 175

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             + A  L  EM + G+ PNVVT++ +++  C+  K+D A +L   M++ G  P+   YN
Sbjct: 176 KVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYN 235

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           TL+ G C  G ++ A EL   M   G   D FSY  L+ G CK  +I+ AL ++ +  + 
Sbjct: 236 TLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNG 295

Query: 333 GIRPTVVTYNT 343
              P VV Y+T
Sbjct: 296 DCPPDVVAYST 306



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 157/318 (49%), Gaps = 8/318 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K         LF  + +    PD+ TY+ LI  FCK+ R+     +
Sbjct: 439 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 498

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+    PD VTF++L++G C    + +A  L  ++ A  C PDV+TYT+L++G C+
Sbjct: 499 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 558

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  + + MA         C+P+ +TY+ + D  C+ G    A  L  +M    +
Sbjct: 559 VGRMVEARRVLKRMAKRG------CQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGV 612

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            P+V+TY SLI GFC   D  EA+ +   +  D+  + ++  + V+M+ LC+ G+M  A 
Sbjct: 613 QPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 672

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME-SNGCMRDVFSYGILING 312
            LLE + Q G  P   +Y  L+ G C    + +A E+   M  S     +  +Y  +I  
Sbjct: 673 ELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQE 732

Query: 313 YCKNKEIEGALSLYSEML 330
             +    E A +L  E+L
Sbjct: 733 LAREGRHEEANALADELL 750


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 124/341 (36%), Positives = 192/341 (56%), Gaps = 8/341 (2%)

Query: 4   FDYMLRM-HPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            D   RM H  P P +  F  L   +AK K +D V+SLF+++  +G+ P LYT NI++NC
Sbjct: 67  LDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNC 126

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C+  +       LG++++  F PD VTFTSL+ G C  +RI +A ALF ++   G +P+
Sbjct: 127 VCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPN 186

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V TYTTLI+ LC+  H   A+ +F +M    G+ G+  +P+ +TY+++  GLC+ G    
Sbjct: 187 VVTYTTLIHCLCKNRHLNHAVEIFNQM----GDNGI--RPNVVTYNSLVSGLCEIGRWSD 240

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L   M    I P+V+T+T+LI  F       EAK L+  M+   V P+V T+  ++N
Sbjct: 241 AAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALIN 300

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LC  G++DEA ++  LM   G  P+   Y TL+ GFC + RV    ++F  M   G + 
Sbjct: 301 GLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVA 360

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +  +Y +LI GYC     + A  ++++M S+   P + TYN
Sbjct: 361 NTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYN 401



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 177/322 (54%), Gaps = 6/322 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L  CL KN+H +  + +F ++   G+ P++ TYN L++  C++GR S    +
Sbjct: 185 PNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWL 244

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    P+ +TFT+LI       +IMEA  L+  +      PDVFTYT LINGLC 
Sbjct: 245 LRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCT 304

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F  M + NG +     P+ +TY+T+  G CK   V+   ++F +M  + +
Sbjct: 305 YGRLDEARQMFYLMES-NGYY-----PNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGL 358

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + +TYT LI+G+C     + A+ +F +M  +   P++ T+NV+++ LC NG +++A  
Sbjct: 359 VANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALM 418

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M +  +  +   Y  ++ G C  G+V  A +LF S+ S G   +V +Y  +I+G+C
Sbjct: 419 IFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFC 478

Query: 315 KNKEIEGALSLYSEMLSKGIRP 336
           +   I  A +L+ +M   G  P
Sbjct: 479 RRGFIHEADALFKKMKEDGFLP 500



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 131/256 (51%), Gaps = 6/256 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L     K         L+K +  + ++PD++TY  LIN  C  GR+     +
Sbjct: 255 PNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQM 314

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  + + P+ VT+T+LI G C   R+ +   +F ++   G   +  TYT LI G C 
Sbjct: 315 FYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCL 374

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA  +F +M +          PD  TY+ + DGLC  G+V+KA  +F  M+   +
Sbjct: 375 VGRPDVAQEVFNQMGSRRAP------PDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREM 428

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + ++VTYT +I+G C      +A  LF  +  +G++PNV+T+  +++  C+ G + EA  
Sbjct: 429 DINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADA 488

Query: 255 LLELMIQIGVRPDASV 270
           L + M + G  P+ SV
Sbjct: 489 LFKKMKEDGFLPNESV 504



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 89/164 (54%)

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           ++A +LF +M      P +V +T L+        ++    LF +M   G+ P + T N++
Sbjct: 64  NEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIV 123

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           MN +C++ +   AS  L  M+++G  PD   + +L+ GFC   R+  A  LF  +   G 
Sbjct: 124 MNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGF 183

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +V +Y  LI+  CKN+ +  A+ ++++M   GIRP VVTYN+
Sbjct: 184 RPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNS 227



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  ++R   +   +NEA  LF  M+     P++V F  +++ + K  + D    L E M 
Sbjct: 50  YRKILRNGLHNLQFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQ 109

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
            +G+ P     N +M+  C + +  RA      M   G   D+ ++  L++G+C    IE
Sbjct: 110 ILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIE 169

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            AL+L+ +++  G RP VVTY T
Sbjct: 170 DALALFDQIVGMGFRPNVVTYTT 192



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 58/109 (53%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           +PP + ++N+L   L  N + +  L +FK +    +  ++ TY I+I   CK+G+V   F
Sbjct: 393 APPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAF 452

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            +   +      P+ +T+T++I G C    I EA ALF K++  G  P+
Sbjct: 453 DLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPN 501


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 189/337 (56%), Gaps = 7/337 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    PP + ++N+L   L K         + K++   G  P++ T+N L++ FCK G 
Sbjct: 83  MRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGN 142

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +LG ++     P+ VT+++LI GLC   + +EA  +  +++A G  PD FTY+ 
Sbjct: 143 VDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSA 202

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+GLC+      A  +   MA G+G     C PD + YS+I    CK G + +A++   
Sbjct: 203 LIHGLCKADKIEEAEQMLRRMA-GSG-----CTPDVVVYSSIIHAFCKSGKLLEAQKTLQ 256

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKN 246
           +M+ +  +PDVVTY ++I G C      EA+ +  +M + G V P+VVT++ ++N LCK+
Sbjct: 257 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKS 316

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
             + EA +LL+ M + G  PD   Y T++DG C  GR+  A+ L   M+  GC  +V +Y
Sbjct: 317 DMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTY 376

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI+G CK ++++ A  +  EM + G  P +VTYNT
Sbjct: 377 TTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNT 413



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 173/317 (54%), Gaps = 7/317 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K++ +     + + + + G+ PD +TY+ LI+  CK  ++     +
Sbjct: 160 PNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQM 219

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+  S  TPD V ++S+I   C   +++EA     ++R     PDV TY T+I+GLC+
Sbjct: 220 LRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 279

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + ++M     E G V  PD +TYST+ +GLCK   + +A++L  +M     
Sbjct: 280 LGKIAEAQVILDQMQ----ESGDVL-PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGC 334

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPDVVTYT++I G C      EA+ L   M   G  PNVVT+  +++ LCK  K+DEA R
Sbjct: 335 NPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAER 394

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN--GCMRDVFSYGILING 312
           ++E M   G  P+   YNT+++G C++GR+  A++L   M+     C  D  +Y  ++N 
Sbjct: 395 VMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNA 454

Query: 313 YCKNKEIEGALSLYSEM 329
              +  ++ A  L  +M
Sbjct: 455 LMSSDLVQEAEQLLEQM 471



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 168/319 (52%), Gaps = 12/319 (3%)

Query: 26  CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP 85
           C A + H    L L + + S G  PD +T+  +I      G +      L  +   C  P
Sbjct: 1   CNAGDLH--AALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM--GC-DP 55

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           + VT+T+LI       ++ EA  L  ++R  GC P++ TY  L++ LC+      A ++ 
Sbjct: 56  NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVV 115

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
           ++M  G   F     P+ +T++++ DG CK G VD A++L   M  + + P+VVTY++LI
Sbjct: 116 KKMIEGG--FA----PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALI 169

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            G C +  + EAK +  EM   GV P+  T++ +++ LCK  K++EA ++L  M   G  
Sbjct: 170 DGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCT 229

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD  VY++++  FC +G++  A++    M       DV +Y  +I+G CK  +I  A  +
Sbjct: 230 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVI 289

Query: 326 YSEMLSKG-IRPTVVTYNT 343
             +M   G + P VVTY+T
Sbjct: 290 LDQMQESGDVLPDVVTYST 308



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 9/220 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAK-NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +R     P V ++N +   L K  K  +  + L +   S  + PD+ TY+ +IN  CK  
Sbjct: 258 MRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSD 317

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     +L R+ ++   PD VT+T++I GLC   R+ EA  L   ++  GC P+V TYT
Sbjct: 318 MLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYT 377

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLI+GLC+      A  + EEM N        C P+ +TY+T+ +GLC  G + +A++L 
Sbjct: 378 TLISGLCKARKVDEAERVMEEMRNAG------CPPNLVTYNTMVNGLCVSGRIKEAQQLV 431

Query: 187 LKMKD--ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            +MKD     +PD  TY +++     ++   EA+ L  +M
Sbjct: 432 QRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 4/187 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I D M       P V +++ +   L K+        L  R+   G  PD+ TY  +I+  
Sbjct: 289 ILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGL 348

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR+     +L  + R+   P+ VT+T+LI GLC   ++ EA  +  ++R  GC P++
Sbjct: 349 CKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNL 408

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY T++NGLC +G    A  L + M +G  E    C PDA TY TI + L     V +A
Sbjct: 409 VTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAE----CSPDAATYRTIVNALMSSDLVQEA 464

Query: 183 KELFLKM 189
           ++L  +M
Sbjct: 465 EQLLEQM 471


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 197/378 (52%), Gaps = 43/378 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +F+ ML    SP  +  +NIL    AK    D    L++ + S+GL P +YTYN L+N
Sbjct: 28  YKLFEQMLDNGISPDGI-EYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLN 86

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA-AALFTKLRAFGCK 119
            FCK  ++     +   +    F PD VT++++I GLC   ++ EA   LF K+   GC 
Sbjct: 87  AFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCS 146

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
            +   Y  LINGLC+  +   A  L EEMA+     G V  PD ITY+TI  GLC+ G V
Sbjct: 147 ANTVAYNALINGLCKDENIERAYKLLEEMASK----GYV--PDNITYNTILSGLCRMGKV 200

Query: 180 DKAKELFLKMKDENINPDVV-----------------------------------TYTSL 204
            +AK+ F  M     +PDVV                                   TY S+
Sbjct: 201 SEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSI 260

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           + G    ++ +EA+ +F +M+  G  PN  T++++++  C+  K+D+A ++LE M +IG 
Sbjct: 261 LLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGA 320

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            PD   YN L+DG C T  V++A ELF +M  NGC  D+ SY +++NG CK  ++  A  
Sbjct: 321 VPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARV 380

Query: 325 LYSEMLSKGIRPTVVTYN 342
           L+  M+ + + P VVT+N
Sbjct: 381 LFDRMIERKLVPDVVTFN 398



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 104/290 (35%), Positives = 158/290 (54%), Gaps = 6/290 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +   L +          F  + S G  PD+  YN L++   K G+      +
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL 241

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++   + PD VT+ S++ GL  +S + EA  +F K+ A GC P+  TY+ +++G CR
Sbjct: 242 FKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCR 301

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  + EEM+    + G V  PD +TY+ + DGLCK   VDKA ELF  M D   
Sbjct: 302 AKKVDDAHKVLEEMS----KIGAV--PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGC 355

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+V+Y+ ++ G C  N  ++A+ LF  M+++ + P+VVTFN++M+ LCK GK+DEA  
Sbjct: 356 APDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKD 415

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           LL+ M   G  PD   YNTLM+G    GR  +A  L  +M+  G + D F
Sbjct: 416 LLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCF 465



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 164/316 (51%), Gaps = 8/316 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N L   L K+++ +    L + + S G  PD  TYN +++  C+MG+VS        +
Sbjct: 151 AYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSM 210

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
               ++PD V +  L+  L  E +  EA  LF  + A G  PD  TY +++ GL R  + 
Sbjct: 211 PSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNM 270

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A  +F++M A+G       C P+  TYS +  G C+   VD A ++  +M      PD
Sbjct: 271 DEAEEMFKKMVASG-------CAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPD 323

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           VVTY  L+ G C  N  ++A  LF  M+D G  P++V+++V++N LCK  K+ +A  L +
Sbjct: 324 VVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFD 383

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            MI+  + PD   +N LMDG C  G+++ AK+L   M  +GC  D  +Y  L+NG  K  
Sbjct: 384 RMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQG 443

Query: 318 EIEGALSLYSEMLSKG 333
               A  L   M  KG
Sbjct: 444 RHIQADRLTQAMKEKG 459



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 104/186 (55%), Gaps = 1/186 (0%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C P+  T+  +    CK+G +    +LF +M D  I+PD + Y  LI G+      +EA 
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L+ EM+  G++P++ T+N ++N  CK  KM EA  L + M + G  PD   Y+T++ G 
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 279 CLTGRVNRAKE-LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           C TG+V  A E LF  M   GC  +  +Y  LING CK++ IE A  L  EM SKG  P 
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPD 183

Query: 338 VVTYNT 343
            +TYNT
Sbjct: 184 NITYNT 189


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 196/348 (56%), Gaps = 18/348 (5%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+R  P P  V  F  L G + +    D V+SL +++    +  + Y++ IL+ CF
Sbjct: 65  LFGDMVRSRPLPS-VIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCF 123

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++       G+I +  F P  VTF++L+ GLC E RI EA  LF ++    CKP+V
Sbjct: 124 CSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM----CKPNV 179

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+TTL+NGLCR G  + A+ L + M     E G+  +P+ ITY TI DG+CK G    A
Sbjct: 180 VTFTTLMNGLCREGRVVEAVALLDRML----EDGL--QPNQITYGTIVDGMCKMGDTVSA 233

Query: 183 KELFLKMKD-ENINPDVVTY-----TSLIRGFCYANDWNEAKCLFIEMMD-QGVQPNVVT 235
             L  KM++  +I P+VV +     T +I GFC +  W+EA+ L  EM++ + + P+VVT
Sbjct: 234 LNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVT 293

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N ++N   K GK  EA  L + M+  G+ P    Y++++DGFC   R++ A+ +F  M 
Sbjct: 294 YNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMA 353

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + GC  D+ ++  LI GYC+ K ++  + L  EM   G+    +TY T
Sbjct: 354 TKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTT 401



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 174/349 (49%), Gaps = 17/349 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +   ML      P V ++N L     K   +     L+  +   G+ P   TY+ +I+ F
Sbjct: 277 LLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGF 336

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  R+     +   +     +PD +TF +LI G C   R+ +   L  ++   G   + 
Sbjct: 337 CKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANT 396

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYTTLI+G C+ G    A +L +EM +       VC P+ +T +T+ DGLC  G +  A
Sbjct: 397 ITYTTLIHGFCQVGDLNAAQDLLQEMVSSG-----VC-PNVVTCNTLLDGLCDNGKLKDA 450

Query: 183 KELFLKMKDEN-----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
            E+F  M+              + PDV TY  LI G      + EA+ L+ EM  +G+ P
Sbjct: 451 LEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 510

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           + +T+N +++ LCK  ++DEA+++ + M      P+   + TL++G+C  GRV+   ELF
Sbjct: 511 DTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF 570

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             M   G + +  +Y  LI+G+ K   I GAL ++ EM++ G+ P  +T
Sbjct: 571 CEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTIT 619



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 187/382 (48%), Gaps = 51/382 (13%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           + M   P    SF IL  C          LS F ++  +G  P + T++ L++  C   R
Sbjct: 104 MEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDR 163

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +S    +  ++ +    P+ VTFT+L+ GLC E R++EA AL  ++   G +P+  TY T
Sbjct: 164 ISEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGT 219

Query: 128 LINGLCRTGHTIVALNLFEEMA---------------------NG---NGEFGVVCK--- 160
           +++G+C+ G T+ ALNL  +M                      NG   +G +    +   
Sbjct: 220 IVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQ 279

Query: 161 ---------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    PD +TY+ + +   KEG   +A+EL+ +M    I P  +TY+S+I GFC  
Sbjct: 280 EMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQ 339

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N  + A+ +F  M  +G  P+++TFN ++   C+  ++D+  +LL  M + G+  +   Y
Sbjct: 340 NRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITY 399

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
            TL+ GFC  G +N A++L   M S+G   +V +   L++G C N +++ AL ++  M  
Sbjct: 400 TTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQK 459

Query: 332 K-----------GIRPTVVTYN 342
                       G+ P V TYN
Sbjct: 460 SKMDIDASHPFNGVEPDVQTYN 481



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 159/305 (52%), Gaps = 17/305 (5%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD+ TYN LIN F K G+      +   +L     P  +T++S+I G C ++R+  A  +
Sbjct: 289 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHM 348

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F  +   GC PD+ T+ TLI G CR       + L  EM     E G+V   + ITY+T+
Sbjct: 349 FYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT----EAGLVA--NTITYTTL 402

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM----M 225
             G C+ G ++ A++L  +M    + P+VVT  +L+ G C      +A  +F  M    M
Sbjct: 403 IHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 462

Query: 226 D-------QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
           D        GV+P+V T+N++++ L   GK  EA  L E M   G+ PD   YN+++ G 
Sbjct: 463 DIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGL 522

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   R++ A ++F SM S     +V ++  LINGYCK   ++  L L+ EM  +GI    
Sbjct: 523 CKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 582

Query: 339 VTYNT 343
           +TY T
Sbjct: 583 ITYIT 587



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 159/320 (49%), Gaps = 5/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +     K    D    +F  + + G  PD+ T+N LI  +C+  RV  G  +
Sbjct: 324 PSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKL 383

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +    + +T+T+LI G C    +  A  L  ++ + G  P+V T  TL++GLC 
Sbjct: 384 LHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCD 443

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G    AL +F+ M     +          +PD  TY+ +  GL  EG   +A+EL+ +M
Sbjct: 444 NGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 503

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I PD +TY S+I G C  +  +EA  +F  M  +   PNVVTF  ++N  CK G++
Sbjct: 504 PHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRV 563

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+   L   M + G+  +A  Y TL+ GF   G +N A ++F  M ++G   D  +   +
Sbjct: 564 DDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNM 623

Query: 310 INGYCKNKEIEGALSLYSEM 329
           + G    +E++ A+++  ++
Sbjct: 624 LTGLWSKEELKRAVAMLEDL 643



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 153/301 (50%), Gaps = 17/301 (5%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++      P + +FN L     + K  D  + L   +   GL  +  TY  LI+ FC++
Sbjct: 350 YLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV 409

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--------- 116
           G ++    +L  ++ S   P+ VT  +L+ GLC   ++ +A  +F  ++           
Sbjct: 410 GDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHP 469

Query: 117 --GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
             G +PDV TY  LI+GL   G  + A  L+EEM +     G+V  PD ITY+++  GLC
Sbjct: 470 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYNSVIHGLC 523

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  +D+A ++F  M  ++ +P+VVT+T+LI G+C A   ++   LF EM  +G+  N +
Sbjct: 524 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 583

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+  +++   K G ++ A  + + M+  GV PD      ++ G      + RA  +   +
Sbjct: 584 TYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDL 643

Query: 295 E 295
           +
Sbjct: 644 Q 644



 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L  GF       +A  LF +M+     P+V+ F  +M  + + G++D    L   M    
Sbjct: 49  LRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRR 108

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           V  +A  +  LM  FC   ++  A   F  +   G    V ++  L++G C    I  AL
Sbjct: 109 VPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEAL 168

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            L+ +M     +P VVT+ T
Sbjct: 169 DLFHQM----CKPNVVTFTT 184


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/393 (33%), Positives = 202/393 (51%), Gaps = 61/393 (15%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAK--NKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           F  MLRM+PSP  +  FN + G L K  N +Y   +SL+ RL    + P + T+N +INC
Sbjct: 34  FYRMLRMNPSPS-IIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAITPSIVTFNTVINC 92

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +C +G +   F VL +IL+  + PD +T T+LIKGLC   ++ EA      + A G + +
Sbjct: 93  YCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLN 152

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             +Y  LINGLC+ G T  AL +  ++       G +   + + YSTI D LCKE  V +
Sbjct: 153 EVSYGILINGLCKMGETRAALQVLRKID------GKLVNTNVVMYSTIIDSLCKEKLVTE 206

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A EL+ +M  + ++PDVVT+++LI GFC    + EA  LF EM+   + P+V TFN++++
Sbjct: 207 AYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVD 266

Query: 242 ELCKNGKMDEASRLLELMIQ--------------IGVR---------------------- 265
            LCK G   E   +L +M++              IG R                      
Sbjct: 267 ALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMV 326

Query: 266 ----------------PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
                           PD   Y++L+DG C + R++ A EL   M + G   DV +Y   
Sbjct: 327 DEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSF 386

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  CKN +++ A++L  ++  +GI+P + TYN
Sbjct: 387 LHALCKNHQVDKAVALVKKIKDQGIQPNINTYN 419



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 177/336 (52%), Gaps = 11/336 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+ IL   L K       L + ++++   +  ++  Y+ +I+  CK   V+  + +  ++
Sbjct: 155 SYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQM 214

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +PD VTF++LI G C   +  EA  LF ++      PDV T+  L++ LC+ G T
Sbjct: 215 IVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGST 274

Query: 139 -----IVALNLFE--EMANGNGEFGVVCK----PDAITYSTITDGLCKEGFVDKAKELFL 187
                ++A+ + E  ++      F ++ K    PD  +Y+ I   LCK   VD+A  LF 
Sbjct: 275 KETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFN 334

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M+ + I PD VTY+SLI G C +   + A  L  +M  +G   +V+T+   ++ LCKN 
Sbjct: 335 EMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNH 394

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           ++D+A  L++ +   G++P+ + YN L+DG C  GR   A+ +F  +   G    V++Y 
Sbjct: 395 QVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYN 454

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+ING C     + A++L  +M   G  P VVTY T
Sbjct: 455 IMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYET 490



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 165/338 (48%), Gaps = 29/338 (8%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  ++ +   L K K       L+ ++    + PD+ T++ LI  FC +G+    F +  
Sbjct: 188 VVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFH 247

Query: 77  RILRSCFTPDAVTFTSLIKGLCAE-----------------SRIMEAAALFTKLRAFGCK 119
            ++ +   PD  TF  L+  LC E                 +++ +A  +F  +      
Sbjct: 248 EMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVT 307

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKE 176
           PDV +YT +I  LC+      AL+LF EM          CK   PD +TYS++ DGLCK 
Sbjct: 308 PDVHSYTIIIKRLCKIKMVDEALSLFNEMR---------CKGITPDKVTYSSLIDGLCKS 358

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
             +  A EL  +M       DV+TYTS +   C  +  ++A  L  ++ DQG+QPN+ T+
Sbjct: 359 ERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTY 418

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N++++ LCK G+ + A  + + ++  G +     YN +++G CL G  + A  L   ME 
Sbjct: 419 NILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMED 478

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           NGC  DV +Y  +I    KN E   A  L  EM+++G+
Sbjct: 479 NGCTPDVVTYETIIRALFKNDENHKAEKLLREMIARGL 516



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 148/305 (48%), Gaps = 23/305 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L         +     LF  +    + PD+ T+NIL++  CK G       V
Sbjct: 221 PDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNV 280

Query: 75  LGRILRSC-----------------FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           L  +++                    TPD  ++T +IK LC    + EA +LF ++R  G
Sbjct: 281 LAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKG 340

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
             PD  TY++LI+GLC++     A  L ++M +  G+       D ITY++    LCK  
Sbjct: 341 ITPDKVTYSSLIDGLCKSERISHAWELLDQM-HARGQ-----PADVITYTSFLHALCKNH 394

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            VDKA  L  K+KD+ I P++ TY  LI G C    +  A+ +F +++ +G +  V T+N
Sbjct: 395 QVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYN 454

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           +++N LC  G  DEA  LLE M   G  PD   Y T++         ++A++L   M + 
Sbjct: 455 IMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLLREMIAR 514

Query: 298 GCMRD 302
           G + +
Sbjct: 515 GLLEE 519



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 116/242 (47%), Gaps = 8/242 (3%)

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT--IVALNLFEEMANGNGEFGVVCK 160
           + +A + F ++      P +  +  ++  L ++ +    +A++L+  +            
Sbjct: 27  VHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSNNNNYPIAISLYHRLQLN------AIT 80

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P  +T++T+ +  C  G +D A  +  K+     +PD +T T+LI+G C     +EA   
Sbjct: 81  PSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHF 140

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
              ++ +G + N V++ +++N LCK G+   A ++L  +    V  +  +Y+T++D  C 
Sbjct: 141 HDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCK 200

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
              V  A EL+  M       DV ++  LI G+C   + + A  L+ EM+   I P V T
Sbjct: 201 EKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCT 260

Query: 341 YN 342
           +N
Sbjct: 261 FN 262



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 2/147 (1%)

Query: 4   FDYMLRMHP--SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           ++ + +MH    P  V ++      L KN   D  ++L K++   G+ P++ TYNILI+ 
Sbjct: 365 WELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDG 424

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK GR     V+   +L   +     T+  +I GLC E    EA  L  K+   GC PD
Sbjct: 425 LCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPD 484

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEM 148
           V TY T+I  L +      A  L  EM
Sbjct: 485 VVTYETIIRALFKNDENHKAEKLLREM 511



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 45/186 (24%)

Query: 203 SLIRGFCYAN--------DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN-------- 246
           SL R   Y++        D ++A   F  M+     P+++ FN I+  L K+        
Sbjct: 8   SLFRTLHYSHSKFNSNHVDVHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSNNNNYPIA 67

Query: 247 -----------------------------GKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
                                        G+MD A  +L  ++++G  PD     TL+ G
Sbjct: 68  ISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKG 127

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            CL G+V+ A      + + G   +  SYGILING CK  E   AL +  ++  K +   
Sbjct: 128 LCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTN 187

Query: 338 VVTYNT 343
           VV Y+T
Sbjct: 188 VVMYST 193


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 195/342 (57%), Gaps = 8/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P P  +  F+ L   +AK   +D V+SL +++ ++G+  +LYTY+I IN F
Sbjct: 62  LFGDMVKSRPFPS-IVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYF 120

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S    +LG++++  + P  VT  SL+ G C  +RI EA AL  ++   G +PD 
Sbjct: 121 CRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 180

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+TTL++GL +      A+ L E M          C+PD +TY  + +GLCK G  D A
Sbjct: 181 VTFTTLVHGLFQHNKASEAVALVERMVVKG------CQPDLVTYGAVINGLCKRGEPDLA 234

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L  KM+   I  DVV Y ++I G C     ++A  LF +M  +G++P+V T+N +++ 
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMR 301
           LC  G+  +ASRLL  M++  + PD   +N L+D F   G++  A++L+  M +S  C  
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFP 354

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           DV +Y  LI G+CK K +E  + ++ EM  +G+    VTY T
Sbjct: 355 DVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTT 396



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 179/372 (48%), Gaps = 31/372 (8%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M+ M   P  V    ++ G    NK  + V +L +R+   G  PDL TY  +IN 
Sbjct: 166 ALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAV-ALVERMVVKGCQPDLVTYGAVING 224

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G       +L ++ +     D V + ++I GLC    + +A  LF K+   G KPD
Sbjct: 225 LCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 284

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV----------------------- 158
           VFTY  LI+ LC  G    A  L  +M   N    +V                       
Sbjct: 285 VFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYD 344

Query: 159 -------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                  C PD + Y+T+  G CK   V++  E+F +M    +  + VTYT+LI GF  A
Sbjct: 345 EMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQA 404

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            D + A+ +F +M+  GV P+++T+N++++ LC NG ++ A  + E M +  ++ D   Y
Sbjct: 405 RDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTY 464

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
            T+++  C  G+V    +LF S+   G   +V +Y  +++G+C+    E A +L+ EM  
Sbjct: 465 TTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKE 524

Query: 332 KGIRPTVVTYNT 343
            G  P   TYNT
Sbjct: 525 DGPLPNSGTYNT 536



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 167/326 (51%), Gaps = 7/326 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N +   L K KH D    LF ++ + G+ PD++TYN LI+C C  GR S    +L 
Sbjct: 250 VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLS 309

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLCRT 135
            +L     PD V F +LI     E +++EA  L+ ++ ++  C PDV  Y TLI G C+ 
Sbjct: 310 DMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKY 369

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                 + +F EM+    + G+V   + +TY+T+  G  +    D A+ +F +M  + ++
Sbjct: 370 KRVEEGMEVFREMS----QRGLV--GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 423

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PD++TY  L+ G C   +   A  +F  M  + ++ ++VT+  ++  LCK GK+++   L
Sbjct: 424 PDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDL 483

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              +   GV+P+   Y T+M GFC  G    A  LFV M+ +G + +  +Y  LI    +
Sbjct: 484 FCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLR 543

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +   +  L  EM S G      T+
Sbjct: 544 DGDEAASAELIKEMRSCGFAGDASTF 569



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 128/251 (50%), Gaps = 6/251 (2%)

Query: 92  SLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151
           +L + +  + ++ +A  LF  +      P +  ++ L++ + +     + ++L E+M N 
Sbjct: 45  NLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQN- 103

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
               G+    +  TYS   +  C+   +  A  +  KM      P +VT  SL+ GFC+ 
Sbjct: 104 ---LGI--SHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHG 158

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N  +EA  L  +M++ G QP+ VTF  +++ L ++ K  EA  L+E M+  G +PD   Y
Sbjct: 159 NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 218

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             +++G C  G  + A  L   ME      DV  Y  +I+G CK K ++ A  L+++M +
Sbjct: 219 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMET 278

Query: 332 KGIRPTVVTYN 342
           KGI+P V TYN
Sbjct: 279 KGIKPDVFTYN 289



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 123/250 (49%), Gaps = 7/250 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D M++     P V ++N L     K K  +  + +F+ ++  GL  +  TY  LI+ F
Sbjct: 342 LYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGF 401

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            +        +V  +++     PD +T+  L+ GLC    +  A  +F  ++    K D+
Sbjct: 402 FQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDI 461

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYTT+I  LC+ G      +LF  ++          KP+ +TY+T+  G C++G  ++A
Sbjct: 462 VTYTTMIEALCKAGKVEDGWDLFCSLSLKG------VKPNVVTYTTMMSGFCRKGLKEEA 515

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF++MK++   P+  TY +LIR      D   +  L  EM   G   +  TF ++ N 
Sbjct: 516 DALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNM 575

Query: 243 LCKNGKMDEA 252
           L  +G++D++
Sbjct: 576 L-HDGRLDKS 584



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 64/129 (49%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           ++A  LF +M+     P++V F+ +++ + K  K D    L E M  +G+  +   Y+  
Sbjct: 57  DDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIF 116

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++ FC   +++ A  +   M   G    + +   L+NG+C    I  A++L  +M+  G 
Sbjct: 117 INYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 176

Query: 335 RPTVVTYNT 343
           +P  VT+ T
Sbjct: 177 QPDTVTFTT 185



 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 49/96 (51%)

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+D+A  L   M++    P    ++ L+       + +    L   M++ G   ++++Y 
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I IN +C+  ++  AL++  +M+  G  P++VT N+
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNS 150


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 123/328 (37%), Positives = 186/328 (56%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L K  H    + +   +   G  PD+YTYN +I+  CK+G V     V
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++    +P+ VT+ +LI  LC E+++ EA  L   L + G  PDV T+ +LI GLC 
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T +  VA+ LFEEM +        C+PD  TY+ + D LC +G +D+A  +  +M+    
Sbjct: 413 TRNHRVAMELFEEMRSKG------CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGC 466

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              V+TY +LI GFC AN   EA+ +F EM   GV  N VT+N +++ LCK+ ++++A++
Sbjct: 467 ARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQ 526

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ MI  G +PD   YN+L+  FC  G + +A ++  +M SNGC  D+ +YG LI+G C
Sbjct: 527 LMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLC 586

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +E A  L   +  KGI  T   YN
Sbjct: 587 KAGRVEVASKLLRSIQMKGINLTPHAYN 614



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 182/365 (49%), Gaps = 42/365 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTY------------------- 55
           P V +FN+L   L +       + + + + S GL PD  T+                   
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRI 246

Query: 56  ----------------NILINCFCKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLC 98
                           N++++ FCK GRV      +  +  +  F PD  TF +L+ GLC
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
               +  A  +   +   G  PDV+TY ++I+GLC+ G    A+ + ++M   +      
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD------ 360

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C P+ +TY+T+   LCKE  V++A EL   +  + I PDV T+ SLI+G C   +   A 
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF EM  +G +P+  T+N++++ LC  GK+DEA  +L+ M   G       YNTL+DGF
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   +   A+E+F  ME +G  R+  +Y  LI+G CK++ +E A  L  +M+ +G +P  
Sbjct: 481 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDK 540

Query: 339 VTYNT 343
            TYN+
Sbjct: 541 YTYNS 545



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 178/343 (51%), Gaps = 5/343 (1%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             + D+M+      P    +N +   L        V     +++  G+ PD+ T+N+LI 
Sbjct: 138 LSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIK 197

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+  ++ P  ++L  +      PD  TFT++++G   E  +  A  +  ++  FGC  
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSW 257

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
              +   +++G C+ G    ALN  +EM+N +G F     PD  T++T+ +GLCK G V 
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFF-----PDQYTFNTLVNGLCKAGHVK 312

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A E+   M  E  +PDV TY S+I G C   +  EA  +  +M+ +   PN VT+N ++
Sbjct: 313 HAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLI 372

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK  +++EA+ L  ++   G+ PD   +N+L+ G CLT     A ELF  M S GC 
Sbjct: 373 STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCE 432

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D F+Y +LI+  C   +++ AL++  +M   G   +V+TYNT
Sbjct: 433 PDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 142/300 (47%), Gaps = 8/300 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P VC+FN L   L   +++   + LF+ + S G  PD +TYN+LI+  C  G++     +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++  S      +T+ +LI G C  ++  EA  +F ++   G   +  TY TLI+GLC+
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A  L ++M    G+     KPD  TY+++    C+ G + KA ++   M     
Sbjct: 518 SRRVEDAAQLMDQMIM-EGQ-----KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY +LI G C A     A  L   +  +G+      +N ++  L +  K  EA  
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAIN 631

Query: 255 LL-ELMIQIGVRPDASVYNTLMDGFCL-TGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           L  E++ Q    PDA  Y  +  G C   G +  A +  V +   G + +  S  +L  G
Sbjct: 632 LFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEG 691



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 8/226 (3%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+   Y  ++  L R+G       + E+M +   E G        T+  + +   +    
Sbjct: 81  PEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTS------TFLILIESYAQFELQ 134

Query: 180 DKAKELFLKMKDE-NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           D+   +   M DE  + PD   Y  ++      N     +    +M   G++P+V TFNV
Sbjct: 135 DEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNV 194

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++  LC+  ++  A  +LE M   G+ PD   + T+M G+   G ++ A  +   M   G
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK-GIRPTVVTYNT 343
           C     S  ++++G+CK   +E AL+   EM ++ G  P   T+NT
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNT 300


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 188/337 (55%), Gaps = 21/337 (6%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNK-HYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +R     P +  FN +   L K K HY TVLSL  ++ S G+ PDL+T +ILINC+C +G
Sbjct: 57  MRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCHLG 116

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +++  F V  +IL+               GLC   ++ EA      + A G   +  TY 
Sbjct: 117 QMTFAFSVFAKILKM--------------GLCLNGKVNEALLFHDHVLALGFHLNHVTYG 162

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+ G T  AL +  ++       G +   + + YSTI DGLCK+  V  A  L+
Sbjct: 163 ILINGLCKMGQTRAALQVLRQIE------GKLVNTNVVMYSTIIDGLCKDKLVTDAYGLY 216

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  + I P VVT++SLI GFC    + +A  LF EM+ + + P+  TFN++++ LCK 
Sbjct: 217 SEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKE 276

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           GK+ EA  ++ +M++ GV P    YNTLMDG+CL   V +AK +   +       +  SY
Sbjct: 277 GKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSY 336

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            I+ING+CK K ++ AL L+ EM  +GI P  VTYN+
Sbjct: 337 NIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNS 373



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/310 (34%), Positives = 165/310 (53%), Gaps = 13/310 (4%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           +D VL+L   LN +       TY ILIN  CKMG+      VL +I       + V +++
Sbjct: 146 HDHVLALGFHLNHV-------TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYST 198

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           +I GLC +  + +A  L++++      P V T+++LI G C  G    A  LF EM   N
Sbjct: 199 IIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKN 258

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   PDA T++ + D LCKEG + +AK +   M  E + P VVTY +L+ G+C  N
Sbjct: 259 ------INPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVN 312

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           +  +AK +   +    V PN  ++N+++N  CK   +DEA  L   M   G+ P    YN
Sbjct: 313 EVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYN 372

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +L+DG C  GR+  A EL   M +N    D+ +Y  LI+ +CKN+ ++ A++L  ++   
Sbjct: 373 SLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEH 432

Query: 333 GIRPTVVTYN 342
           GI+P + TYN
Sbjct: 433 GIQPNMCTYN 442



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 163/324 (50%), Gaps = 12/324 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +F+ L         +     LF  +    + PD YT+NIL++  CK G++     
Sbjct: 225 PPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKN 284

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V+  +++    P  VT+ +L+ G C  + + +A  + + +      P+  +Y  +ING C
Sbjct: 285 VIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFC 344

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           +      AL LF EM          C+   P  +TY+++ DGLCK G +  A EL  +M 
Sbjct: 345 KIKMVDEALCLFHEMC---------CRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMH 395

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           +  I  D+VTY SLI  FC     ++A  L  ++ + G+QPN+ T+N++++ LCK G++ 
Sbjct: 396 NNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLK 455

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            A  + + ++  G   +A  YN +++G C  G  + A+ L   ME NG + D  +Y  +I
Sbjct: 456 NAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETII 515

Query: 311 NGYCKNKEIEGALSLYSEMLSKGI 334
                  E E A  L  EM+ KG+
Sbjct: 516 QALFHKDENEKAQKLLREMVIKGV 539



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 140/287 (48%), Gaps = 18/287 (6%)

Query: 15  PPVCSFNILFG--CL----AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           P V ++N L    CL     K KH   VLS+  R+    + P+  +YNI+IN FCK+  V
Sbjct: 296 PTVVTYNTLMDGYCLVNEVGKAKH---VLSIISRMR---VAPNSRSYNIMINGFCKIKMV 349

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +   +      P  VT+ SLI GLC   RI  A  L  ++       D+ TY +L
Sbjct: 350 DEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSL 409

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I+  C+  H   A+ L +++     E G+  +P+  TY+ + DGLCK G +  A+++F  
Sbjct: 410 IDVFCKNQHVDKAIALVKKIK----EHGI--QPNMCTYNILIDGLCKGGQLKNAQDVFQD 463

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           +  +  N +  TY  +I G C    ++EA+ L  +M D G+ P+ VT+  I+  L    +
Sbjct: 464 LLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDE 523

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            ++A +LL  M+  GV   A      + G  L   +N    LF ++E
Sbjct: 524 NEKAQKLLREMVIKGVVVYAFEIRRTLVGRTLNLGMNLISLLFSALE 570


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/341 (36%), Positives = 198/341 (58%), Gaps = 38/341 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ +LR +P+PP    FN + G L K+KHY TVLSL +++   G+ P+L+  NILI CF
Sbjct: 73  LFNRLLRQNPTPPAF-EFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCF 131

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++G            L  C                   +I +A     KL A G   D 
Sbjct: 132 CQLG------------LIPC-------------------QIHQAFLFHDKLVALGFHLDQ 160

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y TLI+GLC+ G T  AL+L + +       G + + +A+ Y+T+  G+CK+  V+ A
Sbjct: 161 VSYGTLIHGLCKVGETRAALDLLQRVD------GKLVQLNAVMYNTVIYGMCKDKHVNDA 214

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L+ +M  + I+P+VVTY++LI GF       +A  LF +++ + ++P+  TFN++++ 
Sbjct: 215 FDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDG 274

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK+ KM E   +  +M++ G+ PD   YN+LMDG+CL   VN AK +F +M   G   D
Sbjct: 275 FCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPD 334

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + SY ILING+CK K+++ A++L++EM  K I P VVTYN+
Sbjct: 335 IRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNS 375



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 170/342 (49%), Gaps = 26/342 (7%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N +   + K+KH +    L+  + S G+ P++ TY+ LI+ F  +G++     +  +I+
Sbjct: 198 YNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKII 257

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                PD  TF  L+ G C + ++ E   +F  +   G  PDV TY +L++G C      
Sbjct: 258 LENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVN 317

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A ++F  MA G    GV   PD  +Y+ + +G CK   VDKA  LF +M  +NI P+VV
Sbjct: 318 TAKSIFNTMAQG----GV--NPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVV 371

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY SLI G   +   + A  L  +M D+GV PN++T+N I++ L K  ++D+A  L+   
Sbjct: 372 TYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKF 431

Query: 260 IQIGVRPD--------------------ASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
              G++P                      + YN ++ GFC  G  + A  L   M+ + C
Sbjct: 432 KDQGIQPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSC 491

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +  +Y I I     N E + A  L+ EM+++G+     +Y
Sbjct: 492 IPNAVTYEITIRSLLDNNENDKAEKLFREMITRGLLNRSASY 533



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 140/320 (43%), Gaps = 50/320 (15%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F ++  M+    SP  V    ++ G     K  D +  LF ++    + PD YT+NIL++
Sbjct: 215 FDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAI-DLFNKIILENIKPDGYTFNILVD 273

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FCK  ++  G  V   +++    PD VT+ SL+ G C    +  A ++F  +   G  P
Sbjct: 274 GFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNP 333

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMA---------------NGNGEFGVVC------ 159
           D+ +Y  LING C+      A+NLF EM                +G  + G +       
Sbjct: 334 DIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLV 393

Query: 160 --------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI------ 205
                    P+ +TY++I D L K   VDKA  L  K KD+ I P + TYT LI      
Sbjct: 394 DQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKV 453

Query: 206 --------------RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
                          GFC    ++EA  L  +M D    PN VT+ + +  L  N + D+
Sbjct: 454 EGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDK 513

Query: 252 ASRLLELMIQIGVRPDASVY 271
           A +L   MI  G+   ++ Y
Sbjct: 514 AEKLFREMITRGLLNRSASY 533



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 4/191 (2%)

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
           ++ K + I+YS+ +        VD A  LF ++  +N  P    +  ++     +  ++ 
Sbjct: 45  LLTKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHT 104

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNG----KMDEASRLLELMIQIGVRPDASVYN 272
              L  +M  +G++PN+   N+++   C+ G    ++ +A    + ++ +G   D   Y 
Sbjct: 105 VLSLSQKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYG 164

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           TL+ G C  G    A +L   ++      +   Y  +I G CK+K +  A  LYSEM+SK
Sbjct: 165 TLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSK 224

Query: 333 GIRPTVVTYNT 343
           GI P VVTY+ 
Sbjct: 225 GISPNVVTYSA 235


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 125/340 (36%), Positives = 193/340 (56%), Gaps = 10/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P  P +  F+ L   +AK+K+YD V+SLF  +   G+  DLYTYNI+INC 
Sbjct: 56  LFCNMIQSRP-LPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCL 114

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  R      V+G++++  + PD VT +SLI G C  +R+  A  L +K+    CK DV
Sbjct: 115 CRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDV 174

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y T+I+G C+TG    AL LF  M       GV  + D +TY+++  GLC  G    A
Sbjct: 175 VIYNTIIDGFCKTGLVNNALVLFGRMERD----GV--RADTVTYNSLVTGLCCSGRRSDA 228

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M   +I P+V+T+T+LI  F     + EAK  + EM+ + + P+V T+N +++ 
Sbjct: 229 ARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHG 288

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC +G++DEA ++L+LM+  G  PD   YNTL++GFC T RV+   +L   M   G + D
Sbjct: 289 LCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVD 348

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             ++  +I GY +    + A  ++S M   G RP + TY+
Sbjct: 349 TVTFNTIIQGYFQAGRPDAAQEIFSRM---GSRPNIRTYS 385



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 171/362 (47%), Gaps = 39/362 (10%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M++    P  V   +++ G    N+ +  V  L  ++  +    D+  YN +I+ FCK G
Sbjct: 130 MMKFGYEPDVVTVSSLINGFCQGNRVFGAV-DLVSKMEEMRCKLDVVIYNTIIDGFCKTG 188

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V+   V+ GR+ R     D VT+ SL+ GLC   R  +AA L   +      P+V T+T
Sbjct: 189 LVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFT 248

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LIN   R G  + A   +EEM            PD  TY+++  GLC  G VD+AK++ 
Sbjct: 249 ALINAFVREGKFLEAKKFYEEMIRR------CIDPDVFTYNSMIHGLCMHGQVDEAKQIL 302

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV----------------- 229
             M  +   PDVVTY +LI GFC     +E   L  EM  +G+                 
Sbjct: 303 DLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQA 362

Query: 230 ---------------QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
                          +PN+ T+++++  LC N ++++A  L E M +  +  D + YN +
Sbjct: 363 GRPDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIV 422

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + G C+ G V  A +LF S+   G   DV +Y  +I+G+C+ +  + A  LY +M   G+
Sbjct: 423 IHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDGL 482

Query: 335 RP 336
            P
Sbjct: 483 LP 484



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 86/165 (52%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D+A +LF  M      P +V ++ L+     + +++    LF  M   G+  ++ T+N+
Sbjct: 50  LDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N LC+  +   A  ++  M++ G  PD    ++L++GFC   RV  A +L   ME   
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMR 169

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C  DV  Y  +I+G+CK   +  AL L+  M   G+R   VTYN+
Sbjct: 170 CKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNS 214


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 192/342 (56%), Gaps = 9/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+   P  P +  F  L    A  + Y+TV+   +++   G+  DLY++ ILI+
Sbjct: 56  FALFFEMVHSQP-LPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIH 114

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CFC+  R+S    VLG++++  + P  VTF SL+ G C  +RI +A +L   +   G +P
Sbjct: 115 CFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEP 174

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           +V  Y TLI+GLC+ G   +AL L  EM   G G        D +TY+T+  GLC  G  
Sbjct: 175 NVVVYNTLIDGLCKNGELNIALELLNEMEKKGLG-------ADVVTYNTLLTGLCYSGRW 227

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
             A  +   M   +INPDVVT+T+LI  F    + +EA+ L+ EM+   V PN VT+N I
Sbjct: 228 SDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSI 287

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +N LC +G++ +A +  +LM   G  P+   YNTL+ GFC    V+   +LF  M   G 
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             D+F+Y  LI+GYC+  ++  AL ++  M+S+ + P ++T+
Sbjct: 348 NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITH 389



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 155/320 (48%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   L KN   +  L L   +   GL  D+ TYN L+   C  GR S    +
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARM 233

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD VTFT+LI     +  + EA  L+ ++      P+  TY ++INGLC 
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCM 293

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A   F+ MA+        C P+ +TY+T+  G CK   VD+  +LF +M  E  
Sbjct: 294 HGRLYDAKKTFDLMASKG------CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           N D+ TY +LI G+C       A  +F  M+ + V P+++T  ++++ LC NG+++ A  
Sbjct: 348 NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALV 407

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + M +         YN ++ G C   +V +A ELF  +   G   D  +Y I+I G C
Sbjct: 408 KFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLC 467

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           KN     A  L   M  +GI
Sbjct: 468 KNGPRREADELIRRMKEEGI 487



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%)

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           + A  LF +M      P +V +T L+        +        +M   G+  ++ +F ++
Sbjct: 53  EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTIL 112

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+  ++  A  +L  M+++G  P    + +L+ GFCL  R+  A  L + M  +G 
Sbjct: 113 IHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGY 172

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +V  Y  LI+G CKN E+  AL L +EM  KG+   VVTYNT
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNT 216



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%)

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           GF ++  + +A  LF EM+     P++V F  ++       + +      + M   G+  
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISH 104

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   +  L+  FC   R++ A  +   M   G    + ++G L++G+C    I  A SL 
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164

Query: 327 SEMLSKGIRPTVVTYNT 343
             M+  G  P VV YNT
Sbjct: 165 ILMVKSGYEPNVVVYNT 181


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 192/342 (56%), Gaps = 9/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+   P  P +  F  L    A  + Y+TV+   +++   G+  DLY++ ILI+
Sbjct: 56  FALFFEMVHSQP-LPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIH 114

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CFC+  R+S    VLG++++  + P  VTF SL+ G C  +RI +A +L   +   G +P
Sbjct: 115 CFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEP 174

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           +V  Y TLI+GLC+ G   +AL L  EM   G G        D +TY+T+  GLC  G  
Sbjct: 175 NVVVYNTLIDGLCKNGELNIALELLNEMEKKGLG-------ADVVTYNTLLTGLCYSGRW 227

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
             A  +   M   +INPDVVT+T+LI  F    + +EA+ L+ EM+   V PN VT+N I
Sbjct: 228 SDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSI 287

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +N LC +G++ +A +  +LM   G  P+   YNTL+ GFC    V+   +LF  M   G 
Sbjct: 288 INGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             D+F+Y  LI+GYC+  ++  AL ++  M+S+ + P ++T+
Sbjct: 348 NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITH 389



 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 189/342 (55%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ML+  P  P +  F  +   +AK   +D V+ L+ ++ ++G+  DLY++ ILI+
Sbjct: 589 FSLFCEMLQSRP-IPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIH 647

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CFC+  R+S    +LG++++  F P  VT  SL+ G C  +R  EA +L   +  FG  P
Sbjct: 648 CFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP 707

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V  Y T+INGLC+      AL +F  M           + DA+TY+T+  GL   G   
Sbjct: 708 NVVIYNTVINGLCKNRDLNNALEVFYCMEKKG------IRADAVTYNTLISGLSNSGRWT 761

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  L   M    I+P+V+ +T+LI  F    +  EA+ L+ EM+ + V PNV T+N ++
Sbjct: 762 DAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLI 821

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N  C +G + +A  + +LM+  G  PD   YNTL+ GFC + RV    +LF  M   G +
Sbjct: 822 NGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLV 881

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            D F+Y  LI+GYC+  ++  A  +++ M+  G+ P +VTYN
Sbjct: 882 GDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYN 923



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 167/328 (50%), Gaps = 6/328 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V  +N +   L KN+  +  L +F  +   G+  D  TYN LI+     GR +    +
Sbjct: 707  PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARL 766

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L  +++    P+ + FT+LI     E  ++EA  L+ ++      P+VFTY +LING C 
Sbjct: 767  LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCI 826

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G    A  +F+ M +        C PD +TY+T+  G CK   V+   +LF +M  + +
Sbjct: 827  HGCLGDAKYMFDLMVSKG------CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGL 880

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              D  TY +LI G+C A   N A+ +F  M+D GV P++VT+N++++ LC NGK+++A  
Sbjct: 881  VGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALV 940

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            ++E + +  +  D   YN ++ G C T ++  A  LF S+   G   D  +Y  +I+G C
Sbjct: 941  MVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLC 1000

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +      A  L   M   G  P+   Y+
Sbjct: 1001 RKGLQREADKLCRRMKEDGFMPSERIYD 1028



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 155/320 (48%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   L KN   +  L L   +   GL  D+ TYN L+   C  GR S    +
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARM 233

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD VTFT+LI     +  + EA  L+ ++      P+  TY ++INGLC 
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCM 293

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A   F+ MA+        C P+ +TY+T+  G CK   VD+  +LF +M  E  
Sbjct: 294 HGRLYDAKKTFDLMASKG------CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           N D+ TY +LI G+C       A  +F  M+ + V P+++T  ++++ LC NG+++ A  
Sbjct: 348 NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALV 407

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + M +         YN ++ G C   +V +A ELF  +   G   D  +Y I+I G C
Sbjct: 408 KFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLC 467

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           KN     A  L   M  +GI
Sbjct: 468 KNGPRREADELIRRMKEEGI 487



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 160/418 (38%), Gaps = 106/418 (25%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K +  D  + LF+R++  G   D++TYN LI+ +C++G++     +
Sbjct: 314 PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDI 373

Query: 75  LGRILRSCFTPDAVT-----------------------------------FTSLIKGLCA 99
              ++    TPD +T                                   +  +I GLC 
Sbjct: 374 FCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCK 433

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             ++ +A  LF +L   G KPD  TYT +I GLC+ G    A  L   M     E G++C
Sbjct: 434 ADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMK----EEGIIC 489

Query: 160 KPDA--------------------------------------ITYSTITDGLCKEGFVDK 181
           + +A                                      I +S+   G  +  ++  
Sbjct: 490 QMNAEDDHLEEHSSSNKEISLSLREIWERSKSNPFWMQRLIPIAFSSSVKGFVRRHYL-- 547

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDW--------NEAKC--------LFIEMM 225
                  + +   NP+    TSL R F  A+          NE  C        LF EM+
Sbjct: 548 -------LLERGNNPE----TSLSRSFSGASHHHHYRERLRNELHCIKFDDAFSLFCEML 596

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
                P++V F  ++  + K  K D    L   M  +G+  D   +  L+  FC   R++
Sbjct: 597 QSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLS 656

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A  L   M   G    + + G L+NG+C+    + A+SL   M   G  P VV YNT
Sbjct: 657 LALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNT 714



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 6/192 (3%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V ++N L     K+K  +  + LF  +   GL  D +TYN LI+ +C+ G+++    V
Sbjct: 847  PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 906

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              R++    +PD VT+  L+  LC   +I +A  +   L+      D+ TY  +I GLCR
Sbjct: 907  FNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCR 966

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            T     A  LF  +       GV  KPDAI Y T+  GLC++G   +A +L  +MK++  
Sbjct: 967  TDKLKEAWCLFRSLTRK----GV--KPDAIAYITMISGLCRKGLQREADKLCRRMKEDGF 1020

Query: 195  NPDVVTYTSLIR 206
             P    Y   +R
Sbjct: 1021 MPSERIYDETLR 1032



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%)

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           + A  LF +M      P +V +T L+        +        +M   G+  ++ +F ++
Sbjct: 53  EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTIL 112

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+  ++  A  +L  M+++G  P    + +L+ GFCL  R+  A  L + M  +G 
Sbjct: 113 IHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGY 172

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +V  Y  LI+G CKN E+  AL L +EM  KG+   VVTYNT
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNT 216



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%)

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           GF ++  + +A  LF EM+     P++V F  ++       + +      + M   G+  
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISH 104

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   +  L+  FC   R++ A  +   M   G    + ++G L++G+C    I  A SL 
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164

Query: 327 SEMLSKGIRPTVVTYNT 343
             M+  G  P VV YNT
Sbjct: 165 ILMVKSGYEPNVVVYNT 181


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  226 bits (577), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 120/328 (36%), Positives = 186/328 (56%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL   L K+        + + +   G  P++ TYN LIN FCK+G +    V+
Sbjct: 100 PSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVL 159

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L +  +PD  T+  LI G C + R  + A L  ++  +GC+P+  TY TL++ L +
Sbjct: 160 FNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVK 219

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G  I A NL + M   +      CKP   T++ + D  CK G +D A ELF  M D   
Sbjct: 220 SGKYIDAFNLAQMMLRRD------CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGC 273

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ TY  +I G C AN  ++A+ L   M + G  P+VVT+N I++ LCK  ++DEA  
Sbjct: 274 LPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYE 333

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E++   G   D    +TL+DG C + R++ A++L   ME NG   DV +Y ILI+G+C
Sbjct: 334 VYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFC 393

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K  +++ +L+ +SEML KG  PTV+TY+
Sbjct: 394 KADQLDKSLAFFSEMLDKGCVPTVITYS 421



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 166/323 (51%), Gaps = 7/323 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N L     + K       LFK        PD  TY+ LIN FCK       + +L  + +
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P    + ++IKGLC   R+  A   +  ++   C P V TYT L++ LC++     
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRH-CAPSVITYTILVDALCKSARISD 120

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A  + E+M          C P+ +TY+T+ +G CK G +D+A  LF +M + + +PDV T
Sbjct: 121 ASLILEDMIEAG------CAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFT 174

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  LI G+C      +   L  EM+  G +PN +T+N +M+ L K+GK  +A  L ++M+
Sbjct: 175 YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMML 234

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           +   +P    +N ++D FC  G+++ A ELF  M   GC+ D+++Y I+I+G C+   I+
Sbjct: 235 RRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRID 294

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A  L   M   G  P VVTYN+
Sbjct: 295 DARQLLERMTEAGCPPDVVTYNS 317



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 9/230 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +   MLR    P    +FN++     K    D    LF+ +   G  PD+YTYNI+I+
Sbjct: 227 FNLAQMMLRRDCKPSHF-TFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMIS 285

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+  R+     +L R+  +   PD VT+ S++ GLC  S++ EA  ++  LR  G   
Sbjct: 286 GACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFL 345

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           DV T +TLI+GLC++     A  L  EM  NG+        PD + Y+ +  G CK   +
Sbjct: 346 DVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSA-------PDVVAYTILIHGFCKADQL 398

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
           DK+   F +M D+   P V+TY+ +I   C +    +   L   M+++GV
Sbjct: 399 DKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 188/337 (55%), Gaps = 7/337 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    PP + ++N+L   L K         + K++   G  P++ T+N L++ FCK G 
Sbjct: 205 MRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGN 264

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +LG ++     P+ VT+++LI GLC   + +EA  +  +++  G  PD FTY+ 
Sbjct: 265 VDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSA 324

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+GLC+      A  +   MA G+G     C PD + YS+I    CK G + +A++   
Sbjct: 325 LIHGLCKADKIEEAEQMLRRMA-GSG-----CTPDVVVYSSIIHAFCKSGKLLEAQKTLQ 378

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKN 246
           +M+ +  +PDVVTY ++I G C      EA+ +  +M + G V P+VVT++ ++N LCK+
Sbjct: 379 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKS 438

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
             + EA +LL+ M + G  PD   Y T++DG C  GR+  A+ L   M+  GC  +V +Y
Sbjct: 439 DMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTY 498

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI+G CK ++++ A  +  EM + G  P +VTYNT
Sbjct: 499 TTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNT 535



 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 108/319 (33%), Positives = 174/319 (54%), Gaps = 7/319 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K++ +     + + + + G+ PD +TY+ LI+  CK  ++     +
Sbjct: 282 PNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQM 341

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+  S  TPD V ++S+I   C   +++EA     ++R     PDV TY T+I+GLC+
Sbjct: 342 LRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 401

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + E+M     E G V  PD +TYST+ +GLCK   + +A++L  +M     
Sbjct: 402 LGKIAEAQVILEQMQ----ESGDVL-PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGC 456

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPDVVTYT++I G C      EA+ L   M   G  PNVVT+  +++ LCK  K+DEA R
Sbjct: 457 NPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAER 516

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN--GCMRDVFSYGILING 312
           ++E M   G  P+   YNT+++G C++GR+  A++L   M+     C  D  +Y  ++N 
Sbjct: 517 VMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNA 576

Query: 313 YCKNKEIEGALSLYSEMLS 331
              +  ++ A  L  +M S
Sbjct: 577 LMSSDLVQEAEQLLEQMKS 595



 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 174/325 (53%), Gaps = 9/325 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+N L   L + K +     LF+        PD+ +YNI+I+ FC  G +     +L  +
Sbjct: 79  SWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEM 138

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
             + F PDA T T +I  + A +  ++ A     LR+ GC P+V TYT LI    R    
Sbjct: 139 KSAGFAPDAFTHTPIITAM-ANAGDLDGA--MDHLRSMGCDPNVVTYTALIAAFARAKKL 195

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+ L EEM     E G  C P+ +TY+ + D LCK   V  A+++  KM +    P+V
Sbjct: 196 EEAMKLLEEMR----ERG--CPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNV 249

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           +T+ SL+ GFC   + ++A+ L   M+ +G++PNVVT++ +++ LCK+ K  EA  +LE 
Sbjct: 250 MTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEE 309

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M   GV PDA  Y+ L+ G C   ++  A+++   M  +GC  DV  Y  +I+ +CK+ +
Sbjct: 310 MKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 369

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           +  A     EM  +   P VVTYNT
Sbjct: 370 LLEAQKTLQEMRKQRKSPDVVTYNT 394



 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 173/330 (52%), Gaps = 10/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P VCS+NI+             L L + + S G  PD +T+  +I      G +      
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDH 169

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +   C  P+ VT+T+LI       ++ EA  L  ++R  GC P++ TY  L++ LC+
Sbjct: 170 LRSM--GC-DPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++ ++M  G   F     P+ +T++++ DG CK G VD A++L   M  + +
Sbjct: 227 LSMVGAAQDVVKKMIEGG--FA----PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM 280

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTY++LI G C +  + EAK +  EM  +GV P+  T++ +++ LCK  K++EA +
Sbjct: 281 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQ 340

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  M   G  PD  VY++++  FC +G++  A++    M       DV +Y  +I+G C
Sbjct: 341 MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLC 400

Query: 315 KNKEIEGALSLYSEMLSKG-IRPTVVTYNT 343
           K  +I  A  +  +M   G + P VVTY+T
Sbjct: 401 KLGKIAEAQVILEQMQESGDVLPDVVTYST 430



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 140/261 (53%), Gaps = 9/261 (3%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           F+  A ++ SL++ L    +  EA  LF       C+PDV +Y  +I+G C  G    AL
Sbjct: 73  FSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAAL 132

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            L EEM +    F     PDA T++ I   +   G +D A +    M     +P+VVTYT
Sbjct: 133 ELLEEMKSAG--FA----PDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYT 183

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           +LI  F  A    EA  L  EM ++G  PN+VT+NV+++ LCK   +  A  +++ MI+ 
Sbjct: 184 ALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEG 243

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G  P+   +N+L+DGFC  G V+ A++L   M + G   +V +Y  LI+G CK+++   A
Sbjct: 244 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 303

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
             +  EM ++G+ P   TY+ 
Sbjct: 304 KEVLEEMKTRGVTPDAFTYSA 324



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 9/220 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKMG 66
           +R     P V ++N +   L K         + +++   G + PD+ TY+ +IN  CK  
Sbjct: 380 MRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSD 439

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     +L R+ ++   PD VT+T++I GLC   R+ EA  L   ++  GC P+V TYT
Sbjct: 440 MLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYT 499

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLI+GLC+      A  + EEM N        C P+ +TY+T+ +GLC  G + +A++L 
Sbjct: 500 TLISGLCKARKVDEAERVMEEMRNAG------CPPNLVTYNTMVNGLCVSGRIKEAQQLV 553

Query: 187 LKMKD--ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            +MKD     +PD  TY +++     ++   EA+ L  +M
Sbjct: 554 QRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 32/147 (21%)

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G      ++N ++  L +  K  EA  L    +     PD   YN ++ GFC  G ++ A
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 288 KELFVSMESN--------------------------------GCMRDVFSYGILINGYCK 315
            EL   M+S                                 GC  +V +Y  LI  + +
Sbjct: 132 LELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFAR 191

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
            K++E A+ L  EM  +G  P +VTYN
Sbjct: 192 AKKLEEAMKLLEEMRERGCPPNLVTYN 218


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 192/370 (51%), Gaps = 30/370 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD ML   PSP  V +++ +   L+K +  D    +F R+   G+ PD   Y  L++
Sbjct: 228 YSLFDAMLDRGPSPD-VVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVH 286

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +C  G+      +  ++ R    PD VT+T+L+  LC   +  EA  +F  L   G KP
Sbjct: 287 GYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKP 346

Query: 121 DVFTYTTLINGLCRTG-----HTIVALNLFEEMANGNGEFGVV----------------- 158
           D  TY TL++G    G     H ++ L + + M  G+  F ++                 
Sbjct: 347 DSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVF 406

Query: 159 -------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    PD + Y T+ D LC  G VD A   F  +K E + P++V +T+LI G C  
Sbjct: 407 SNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTC 466

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           + W++ + L  EM+D+G+  + + FN IM  LCK G++ EA  L +LM++IG+ P+ + Y
Sbjct: 467 DKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTY 526

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           NTL+DG+CL G+++ A +L   M  NG      +Y  +INGY +N  IE  L+L  EM  
Sbjct: 527 NTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDG 586

Query: 332 KGIRPTVVTY 341
           KG+ P +VTY
Sbjct: 587 KGVNPGIVTY 596



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 174/348 (50%), Gaps = 44/348 (12%)

Query: 36  VLSLFKRLNSIGL---FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
            +SLF R+   G     P++ TY I+I C  ++GR+   F  +GR++ +    +     S
Sbjct: 80  AISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQS 139

Query: 93  LIKG-LC-AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
             +G LC A  R M    +  ++   GCKPD+F+YT L+ GLC    +  AL+L   MA+
Sbjct: 140 SSQGPLCTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMAD 199

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY--------- 201
             G     C  D + Y+T+ +GL +EG +DKA  LF  M D   +PDVVTY         
Sbjct: 200 HKGR----CPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSK 255

Query: 202 --------------------------TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
                                     TSL+ G+C +    EA  +F +M   GV+P+VVT
Sbjct: 256 TQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVT 315

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +  +M+ LCKNGK  EA ++ + +++ G +PD++ Y TL+ G+   G +    +L   M 
Sbjct: 316 YTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMM 375

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G       + +++  Y K+ +++ AL ++S M  +G+ P +V Y T
Sbjct: 376 KKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGT 423



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 6/242 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN++ G  AK+   D  L +F  +   GL PD+  Y  +++  C  GRV         + 
Sbjct: 386 FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLK 445

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ V FT+LI GLC   +  +   L  ++   G   D   +  ++  LC+ G  I
Sbjct: 446 SEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVI 505

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A NLF+ M        +  +P+  TY+T+ DG C +G +D+A +L   M    + P  V
Sbjct: 506 EAKNLFDLMVR------IGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDV 559

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY ++I G+       +   L  EM  +GV P +VT+ +++  L + G+   A  L   M
Sbjct: 560 TYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 619

Query: 260 IQ 261
           I+
Sbjct: 620 IK 621


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 192/370 (51%), Gaps = 30/370 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD ML   PSP  V +++ +   L+K +  D    +F R+   G+ PD   Y  L++
Sbjct: 227 YSLFDAMLDRGPSPD-VVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVH 285

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +C  G+      +  ++ R    PD VT+T+L+  LC   +  EA  +F  L   G KP
Sbjct: 286 GYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKP 345

Query: 121 DVFTYTTLINGLCRTG-----HTIVALNLFEEMANGNGEFGVV----------------- 158
           D  TY TL++G    G     H ++ L + + M  G+  F ++                 
Sbjct: 346 DSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVF 405

Query: 159 -------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    PD + Y T+ D LC  G VD A   F  +K E + P++V +T+LI G C  
Sbjct: 406 SNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTC 465

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           + W++ + L  EM+D+G+  + + FN IM  LCK G++ EA  L +LM++IG+ P+ + Y
Sbjct: 466 DKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTY 525

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           NTL+DG+CL G+++ A +L   M  NG      +Y  +INGY +N  IE  L+L  EM  
Sbjct: 526 NTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDG 585

Query: 332 KGIRPTVVTY 341
           KG+ P +VTY
Sbjct: 586 KGVNPGIVTY 595



 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 177/347 (51%), Gaps = 43/347 (12%)

Query: 36  VLSLFKRLNSIGL---FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
            +SLF R+   G     P++ TY I+I C  ++GR+   F  +GR++ +      + F+ 
Sbjct: 80  AISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSP 139

Query: 93  LIKGLCAESRIMEAAAL-FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151
           L+KGLC   R  +A  +   ++   GCKPD+F+YT L+ GLC    +  AL+L   MA+ 
Sbjct: 140 LLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADH 199

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT----------- 200
            G     C  D + Y+T+ +GL +EG +DKA  LF  M D   +PDVVT           
Sbjct: 200 KGR----CPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKT 255

Query: 201 ------------------------YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
                                   YTSL+ G+C +    EA  +F +M   GV+P+VVT+
Sbjct: 256 QAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTY 315

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +M+ LCKNGK  EA ++ + +++ G +PD++ Y TL+ G+   G +    +L   M  
Sbjct: 316 TALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMK 375

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G       + +++  Y K+ +++ AL ++S M  +G+ P +V Y T
Sbjct: 376 KGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGT 422



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 6/242 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN++ G  AK+   D  L +F  +   GL PD+  Y  +++  C  GRV         + 
Sbjct: 385 FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLK 444

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ V FT+LI GLC   +  +   L  ++   G   D   +  ++  LC+ G  I
Sbjct: 445 SEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVI 504

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A NLF+ M        +  +P+  TY+T+ DG C +G +D+A +L   M    + P  V
Sbjct: 505 EAKNLFDLMVR------IGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDV 558

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY ++I G+       +   L  EM  +GV P +VT+ +++  L + G+   A  L   M
Sbjct: 559 TYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 618

Query: 260 IQ 261
           I+
Sbjct: 619 IK 620


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/328 (37%), Positives = 185/328 (56%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L K  H    + +   +   G  PD+YTYN +I+  CK+G V      
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEF 352

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++    +P+ VT+ +LI  LC E+++ EA  L   L + G  PDV T+ +LI GLC 
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T +  VA+ LFEEM +        C+PD  TY+ + D LC +G +D+A  +  +M+    
Sbjct: 413 TRNHRVAMELFEEMRSKG------CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGC 466

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              V+TY +LI GFC AN   EA+ +F EM   GV  N VT+N +++ LCK+ ++++AS+
Sbjct: 467 ARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQ 526

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ MI  G +PD   YN+L+  FC  G + +A ++  +M SNGC  D+ +YG LI+G C
Sbjct: 527 LMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLC 586

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +E A  L   +  KGI  T   YN
Sbjct: 587 KAGRVEVASKLLRSIQMKGIALTPHAYN 614



 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 182/365 (49%), Gaps = 42/365 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTY------------------- 55
           P V +FN+L   L +       + + + + S GL PD  T+                   
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRI 246

Query: 56  ----------------NILINCFCKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLC 98
                           N++++ FCK GRV      +  +  +  F PD  TF +L+ GLC
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
               +  A  +   +   G  PDV+TY ++I+GLC+ G    A+   ++M   +      
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRD------ 360

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C P+ +TY+T+   LCKE  V++A EL   +  + I PDV T+ SLI+G C   +   A 
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF EM  +G +P+  T+N++++ LC  GK+DEA  +L+ M   G       YNTL+DGF
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   ++  A+E+F  ME +G  R+  +Y  LI+G CK++ +E A  L  +M+ +G +P  
Sbjct: 481 CKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDK 540

Query: 339 VTYNT 343
            TYN+
Sbjct: 541 FTYNS 545



 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 173/329 (52%), Gaps = 5/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N +   L    +   V     +++  G+ PD+ T+N+LI   C+  ++ P  ++
Sbjct: 152 PDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILM 211

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD  TFT++++G   E  +  A  +  ++  FGC     +   +++G C+
Sbjct: 212 LEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCK 271

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    ALN  +EM+N +G F     PD  T++T+ +GLCK G V  A E+   M  E  
Sbjct: 272 EGRVEDALNFIQEMSNQDGFF-----PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY 326

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDV TY S+I G C   +  EA     +M+ +   PN VT+N +++ LCK  +++EA+ 
Sbjct: 327 DPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATE 386

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L  ++   G+ PD   +N+L+ G CLT     A ELF  M S GC  D F+Y +LI+  C
Sbjct: 387 LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLC 446

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +++ AL++  +M   G   +V+TYNT
Sbjct: 447 SKGKLDEALNMLKQMELSGCARSVITYNT 475



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 136/319 (42%), Gaps = 78/319 (24%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P VC+FN L   L   +++   + LF+ + S G  PD +TYN+LI+  C  G++     +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 75  LGRI-----LRSCFT------------------------------PDAVTFTSLIKGLCA 99
           L ++      RS  T                               ++VT+ +LI GLC 
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             R+ +A+ L  ++   G KPD FTY +L+   CR G    A ++ + M + NG     C
Sbjct: 518 SRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTS-NG-----C 571

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELF--LKMK----------------------DENIN 195
           +PD +TY T+  GLCK G V+ A +L   ++MK                       E IN
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAIN 631

Query: 196 ------------PDVVTYTSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
                       PD V+Y  + RG C       EA    +E++++G  P   +  ++   
Sbjct: 632 LFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEG 691

Query: 243 LCKNGKMDEASRLLELMIQ 261
           L      +   +L+ +++Q
Sbjct: 692 LLTLSMEETLVKLVNMVMQ 710



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 7/207 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M  +H       ++N L   L K++  +    L  ++   G  PD +TYN L+  F
Sbjct: 492 IFDEM-EVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHF 550

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G +     ++  +  +   PD VT+ +LI GLC   R+  A+ L   ++  G     
Sbjct: 551 CRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTP 610

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF-VDK 181
             Y  +I GL R   T  A+NLF EM   N        PDA++Y  +  GLC  G  + +
Sbjct: 611 HAYNPVIQGLFRKRKTTEAINLFREMLEQNE-----AAPDAVSYRIVFRGLCNGGGPIRE 665

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGF 208
           A +  +++ ++   P+  +   L  G 
Sbjct: 666 AVDFLVELLEKGFVPEFSSLYMLAEGL 692



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 8/226 (3%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+   Y  ++  L R+G       + E+M N   E G         +  + +   +    
Sbjct: 81  PEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTS------PFLILIESYAQFELQ 134

Query: 180 DKAKELFLKMKDE-NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           D+   +   M D+  + PD   Y  ++      N+    +    +M   G++P+V TFNV
Sbjct: 135 DEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNV 194

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++  LC+  ++  A  +LE M   G+ PD   + T+M G+   G ++ A  +   M   G
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFG 254

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK-GIRPTVVTYNT 343
           C     S  ++++G+CK   +E AL+   EM ++ G  P   T+NT
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNT 300


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 196/342 (57%), Gaps = 10/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD +LR   +   +   N     +A+       LSLF R+       DL TY+I+I C 
Sbjct: 54  LFDELLRRDTTS--IFDLNSALSAVARESPA-VALSLFNRMPR----ADLCTYSIVIGCC 106

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGCKPD 121
            + G +   F  LGR++R+ +T  A+TF+ L+KGLC + R  +A  +   ++ A GC P+
Sbjct: 107 SRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPN 166

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            F+Y  L+ GLC    +  AL+L   M   +   G  C PD ++Y+T+ +GL +EG +DK
Sbjct: 167 AFSYNILLKGLCDENRSQQALHLLHTMMADDTRGG--CPPDVVSYTTVINGLLREGQLDK 224

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  LF +M D+ ++P+ +TY  L+ G+C +    EA  +F +M   GV+P+VVT+N +M 
Sbjct: 225 AYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMV 284

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCKNG+  EA ++ + M++ G +PD+S+Y TL+ G+   G + +  +L   M  NG   
Sbjct: 285 YLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQP 344

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D + + ILI  Y K+  ++ A+  +S+M  +G+ P +VTY T
Sbjct: 345 DHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGT 386



 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 184/359 (51%), Gaps = 29/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S+  +   L +    D    LF  +   G+ P+  TYN L++ +C  G+      
Sbjct: 203 PPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIG 262

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  ++ R    PD VT+ +L+  LC   R MEA  +F  +   G KPD   Y TL++G  
Sbjct: 263 IFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYA 322

Query: 134 RTGHTIVALNLFEEMA-NGN--------------GEFGVV--------------CKPDAI 164
             G+ +    L + M  NG                + G+V                P+ +
Sbjct: 323 TEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIV 382

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY T+ D LC+ G VD A   F ++  E + P+ V + +LI G C  + W++A+ L +EM
Sbjct: 383 TYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEM 442

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + +G+ PN + FN ++N LCK G +  A  + +LM+++ V+ D   Y TL+DG+CL G+V
Sbjct: 443 IGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKV 502

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + A +L   M  +G   +  +Y  +INGYCKN  IE A SL+ +M SKG+ P +V Y+T
Sbjct: 503 DEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYST 561



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 170/327 (51%), Gaps = 7/327 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M++    P       +L G  A   +   +  L   +   G  PD Y +NILI  +
Sbjct: 298 VFDSMVKKGHKPDSSIYGTLLHG-YATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAY 356

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G V    +   ++ +    P+ VT+ +++  LC   ++ +A + F +L + G  P+ 
Sbjct: 357 AKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNG 416

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             + TLI+GLC       A  L  EM  G G    +C P+ I ++T+ + LCKEG V +A
Sbjct: 417 VVFRTLIHGLCACDKWDKAEELAVEMI-GRG----IC-PNTIFFNTLLNHLCKEGMVTRA 470

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K +F  M   ++  DV+TYT+LI G+C     +EA  L   M+  GV+PN VT+N I+N 
Sbjct: 471 KNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIING 530

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CKNG++++A  L   M   GV P   +Y+T++ G   T R+  AKEL++ M   G    
Sbjct: 531 YCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLP 590

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEM 329
           + +Y I++ G C+N   + AL ++  +
Sbjct: 591 IGTYNIILQGLCQNNCTDDALRMFHNL 617



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 166/337 (49%), Gaps = 30/337 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R + + P    FNIL G  AK+   D  +  F ++   GL P++ TY  +++  
Sbjct: 333 LLDVMVR-NGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDAL 391

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++G+V        R++    TP+ V F +LI GLCA  +  +A  L  ++   G  P+ 
Sbjct: 392 CRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNT 451

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV------------------------ 158
             + TL+N LC+ G    A N+F+ M   + +  V+                        
Sbjct: 452 IFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEG 511

Query: 159 -----CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                 KP+ +TY+TI +G CK G ++ A  LF +M  + +NP +V Y++++ G      
Sbjct: 512 MVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRR 571

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
              AK L++ M+  G++  + T+N+I+  LC+N   D+A R+   +  I        +N 
Sbjct: 572 IAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNI 631

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           ++D     GR + AK+LF S+ + G + +V +Y +++
Sbjct: 632 MIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMM 668



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 146/329 (44%), Gaps = 42/329 (12%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD ++    +P  V    ++ G  A +K +D    L   +   G+ P+   +N L+N  C
Sbjct: 404 FDRLISEGLTPNGVVFRTLIHGLCACDK-WDKAEELAVEMIGRGICPNTIFFNTLLNHLC 462

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G V+    +   ++R     D +T+T+LI G C + ++ EA  L   +   G KP+  
Sbjct: 463 KEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEV 522

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY T+ING C+ G    A +LF +MA+     GV   P  + YSTI  GL +   +  AK
Sbjct: 523 TYNTIINGYCKNGRIEDACSLFRQMASK----GV--NPGIVIYSTILHGLFQTRRIAAAK 576

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYAN------------------------------- 212
           EL+L M    I   + TY  +++G C  N                               
Sbjct: 577 ELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDAL 636

Query: 213 ----DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
                 +EAK LF  ++ +G+ PNVVT+ ++M  L + G ++E   L   + + G   D+
Sbjct: 637 LKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADS 696

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            + N L+      G V +A      ++ N
Sbjct: 697 RMLNALVGKLPQKGEVRKAGVYLSKIDEN 725


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 180/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N     L +N H    L +   +   G  PD++TYNI++NC CK G++     +
Sbjct: 192 PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 251

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++     PD  TF +LI  LC  +R+ EA  L  ++   G  PDV+T+  LIN LC+
Sbjct: 252 LNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 311

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +AL LFEEM N        C PD +TY+T+ D LC  G + KA +L   M+    
Sbjct: 312 VGDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 365

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               +TY ++I G C      EA+ +F +M  QG+  N +TFN +++ LCK+ K+D+A  
Sbjct: 366 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 425

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  MI  G++P+   YN+++  +C  G + +A ++  +M +NG   DV +YG LING C
Sbjct: 426 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 485

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    + AL +   M  KG+RPT   YN
Sbjct: 486 KAGRTQVALKVLRGMRIKGMRPTPKAYN 513



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L   L +     T + + + ++S G+ PD  T+  L+  F + G +     V
Sbjct: 87  PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 146

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+L    +   VT   LI G C   R+ +A     +  A G +PD  TY T +NGLC+
Sbjct: 147 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 206

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             H   AL + + M     +      PD  TY+ + + LCK G +++AK +  +M D   
Sbjct: 207 NDHVGHALKVMDVMVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGC 260

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ T+ +LI   C  N   EA  L  ++  +GV P+V TFN+++N LCK G    A R
Sbjct: 261 LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALR 320

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M   G  PD   YNTL+D  C  G++ +A +L   MES GC R   +Y  +I+G C
Sbjct: 321 LFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 380

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   IE A  ++ +M  +GI    +T+NT
Sbjct: 381 KKMRIEEAEEVFDQMDLQGISRNAITFNT 409



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 164/328 (50%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L   L      +  L L +++   G+ PD+YT+NILIN  CK+G       +
Sbjct: 262 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 321

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S  TPD VT+ +LI  LC+  ++ +A  L   + + GC     TY T+I+GLC+
Sbjct: 322 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 381

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F++M     +   + + +AIT++T+ DGLCK+  +D A EL  +M  E +
Sbjct: 382 KMRIEEAEEVFDQM-----DLQGISR-NAITFNTLIDGLCKDKKIDDAFELINQMISEGL 435

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +TY S++  +C   D  +A  +   M   G + +VVT+  ++N LCK G+   A +
Sbjct: 436 QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALK 495

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  M   G+RP    YN ++        +  A  LF  M   G   D  +Y I+  G C
Sbjct: 496 VLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLC 555

Query: 315 K-NKEIEGALSLYSEMLSKGIRPTVVTY 341
           +    I+ A     EM+ KG  P   ++
Sbjct: 556 RGGGPIKEAFDFMLEMVDKGFIPEFSSF 583



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 159/358 (44%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L     +    +  L +  R+  +G      T N+LIN +CK+GRV      
Sbjct: 122 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 181

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + + +   F PD +T+ + + GLC    +  A  +   +   G  PDVFTY  ++N LC+
Sbjct: 182 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 241

Query: 135 TGHTIVALNLFEEMANG---------NGEFGVVC--------------------KPDAIT 165
            G    A  +  +M +          N     +C                     PD  T
Sbjct: 242 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 301

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ + + LCK G    A  LF +MK+    PD VTY +LI   C      +A  L  +M 
Sbjct: 302 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 361

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G   + +T+N I++ LCK  +++EA  + + M   G+  +A  +NTL+DG C   +++
Sbjct: 362 STGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKID 421

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A EL   M S G   +  +Y  ++  YCK  +I+ A  +   M + G    VVTY T
Sbjct: 422 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGT 479



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 139/287 (48%), Gaps = 29/287 (10%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D V +  L+  L   S++    ++++++ A G KPDV T+ TL+  LCR      A+ + 
Sbjct: 53  DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 112

Query: 146 EEMAN---------------GNGEFGVV--------------CKPDAITYSTITDGLCKE 176
           EEM++               G  E G +              C    +T + + +G CK 
Sbjct: 113 EEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL 172

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G V+ A     +   +   PD +TY + + G C  +    A  +   M+ +G  P+V T+
Sbjct: 173 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 232

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N+++N LCKNG+++EA  +L  M+  G  PD + +NTL+   C   R+  A +L   +  
Sbjct: 233 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTV 292

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G   DV+++ ILIN  CK  +   AL L+ EM + G  P  VTYNT
Sbjct: 293 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 339



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           FG + D   Y  L+N L       +  +++ EM    G  G+  KPD +T++T+   LC+
Sbjct: 48  FGIQADTVVYNHLLNVLVEGSKMKLLESVYSEM----GARGI--KPDVVTFNTLMKALCR 101

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
              V  A  +  +M    + PD  T+T+L++GF        A  +   M++ G     VT
Sbjct: 102 AHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVT 161

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            NV++N  CK G++++A   ++  I  G  PD   YNT ++G C    V  A ++   M 
Sbjct: 162 VNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMV 221

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   DVF+Y I++N  CKN ++E A  + ++M+ +G  P + T+NT
Sbjct: 222 QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 269



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 7/249 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P    ++N +   L K    +    +F +++  G+  +  T+N LI+  CK  ++   F 
Sbjct: 366 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 425

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++ +++     P+ +T+ S++   C +  I +AA +   + A G + DV TY TLINGLC
Sbjct: 426 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 485

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T VAL +   M           +P    Y+ +   L +   +  A  LF +M +  
Sbjct: 486 KAGRTQVALKVLRGMRIKG------MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 539

Query: 194 INPDVVTYTSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
             PD +TY  + RG C       EA    +EM+D+G  P   +F ++   L   G  D  
Sbjct: 540 EPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYF 599

Query: 253 SRLLELMIQ 261
            R +E++++
Sbjct: 600 IRAIEIIME 608



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK-MGRV 68
           M P+P    ++N +   L +  +    LSLF+ +  +G  PD  TY I+    C+  G +
Sbjct: 505 MRPTPK---AYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI 561

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
              F  +  ++   F P+  +F  L +GL
Sbjct: 562 KEAFDFMLEMVDKGFIPEFSSFRMLAEGL 590


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 180/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N     L +N H    L +   +   G  PD++TYNI++NC CK G++     +
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 343

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++     PD  TF +LI  LC  +R+ EA  L  ++   G  PDV+T+  LIN LC+
Sbjct: 344 LNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +AL LFEEM N        C PD +TY+T+ D LC  G + KA +L   M+    
Sbjct: 404 VGDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               +TY ++I G C      EA+ +F +M  QG+  N +TFN +++ LCK+ K+D+A  
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  MI  G++P+   YN+++  +C  G + +A ++  +M +NG   DV +YG LING C
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    + AL +   M  KG+RPT   YN
Sbjct: 578 KAGRTQVALKVLRGMRIKGMRPTPKAYN 605



 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L   L +     T + + + ++S G+ PD  T+  L+  F + G +     V
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+L    +   VT   LI G C   R+ +A     +  A G +PD  TY T +NGLC+
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 298

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             H   AL + + M     +      PD  TY+ + + LCK G +++AK +  +M D   
Sbjct: 299 NDHVGHALKVMDVMVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGC 352

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ T+ +LI   C  N   EA  L  ++  +GV P+V TFN+++N LCK G    A R
Sbjct: 353 LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALR 412

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M   G  PD   YNTL+D  C  G++ +A +L   MES GC R   +Y  +I+G C
Sbjct: 413 LFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   IE A  ++ +M  +GI    +T+NT
Sbjct: 473 KKMRIEEAEEVFDQMDLQGISRNAITFNT 501



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 164/328 (50%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L   L      +  L L +++   G+ PD+YT+NILIN  CK+G       +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S  TPD VT+ +LI  LC+  ++ +A  L   + + GC     TY T+I+GLC+
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F++M     +   + + +AIT++T+ DGLCK+  +D A EL  +M  E +
Sbjct: 474 KMRIEEAEEVFDQM-----DLQGISR-NAITFNTLIDGLCKDKKIDDAFELINQMISEGL 527

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +TY S++  +C   D  +A  +   M   G + +VVT+  ++N LCK G+   A +
Sbjct: 528 QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALK 587

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  M   G+RP    YN ++        +  A  LF  M   G   D  +Y I+  G C
Sbjct: 588 VLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLC 647

Query: 315 K-NKEIEGALSLYSEMLSKGIRPTVVTY 341
           +    I+ A     EM+ KG  P   ++
Sbjct: 648 RGGGPIKEAFDFMLEMVDKGFIPEFSSF 675



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 159/358 (44%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L     +    +  L +  R+  +G      T N+LIN +CK+GRV      
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + + +   F PD +T+ + + GLC    +  A  +   +   G  PDVFTY  ++N LC+
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 135 TGHTIVALNLFEEMANG---------NGEFGVVC--------------------KPDAIT 165
            G    A  +  +M +          N     +C                     PD  T
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ + + LCK G    A  LF +MK+    PD VTY +LI   C      +A  L  +M 
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G   + +T+N I++ LCK  +++EA  + + M   G+  +A  +NTL+DG C   +++
Sbjct: 454 STGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKID 513

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A EL   M S G   +  +Y  ++  YCK  +I+ A  +   M + G    VVTY T
Sbjct: 514 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGT 571



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 141/293 (48%), Gaps = 41/293 (13%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D V +  L+  L   S++    ++++++ A G KPDV T+ TL+  LCR      A+ + 
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 204

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD-------------- 191
           EEM++     GV   PD  T++T+  G  +EG ++ A  +  +M +              
Sbjct: 205 EEMSS----RGVA--PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLI 258

Query: 192 ---------------------ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
                                +   PD +TY + + G C  +    A  +   M+ +G  
Sbjct: 259 NGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHD 318

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+V T+N+++N LCKNG+++EA  +L  M+  G  PD + +NTL+   C   R+  A +L
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +   G   DV+++ ILIN  CK  +   AL L+ EM + G  P  VTYNT
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 431



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           FG + D   Y  L+N L       +  +++ EM    G  G+  KPD +T++T+   LC+
Sbjct: 140 FGIQADTVVYNHLLNVLVEGSKMKLLESVYSEM----GARGI--KPDVVTFNTLMKALCR 193

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
              V  A  +  +M    + PD  T+T+L++GF        A  +   M++ G     VT
Sbjct: 194 AHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVT 253

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            NV++N  CK G++++A   ++  I  G  PD   YNT ++G C    V  A ++   M 
Sbjct: 254 VNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMV 313

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   DVF+Y I++N  CKN ++E A  + ++M+ +G  P + T+NT
Sbjct: 314 QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 7/249 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P    ++N +   L K    +    +F +++  G+  +  T+N LI+  CK  ++   F 
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++ +++     P+ +T+ S++   C +  I +AA +   + A G + DV TY TLINGLC
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T VAL +   M           +P    Y+ +   L +   +  A  LF +M +  
Sbjct: 578 KAGRTQVALKVLRGMRIKG------MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631

Query: 194 INPDVVTYTSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
             PD +TY  + RG C       EA    +EM+D+G  P   +F ++   L   G  D  
Sbjct: 632 EPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYF 691

Query: 253 SRLLELMIQ 261
            R +E++++
Sbjct: 692 IRAIEIIME 700



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK-MGRV 68
           M P+P    ++N +   L +  +    LSLF+ +  +G  PD  TY I+    C+  G +
Sbjct: 597 MRPTPK---AYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI 653

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
              F  +  ++   F P+  +F  L +GL
Sbjct: 654 KEAFDFMLEMVDKGFIPEFSSFRMLAEGL 682


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 180/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N     L +N H    L +   +   G  PD++TYNI++NC CK G++     +
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 343

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++     PD  TF +LI  LC  +R+ EA  L  ++   G  PDV+T+  LIN LC+
Sbjct: 344 LNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +AL LFEEM N        C PD +TY+T+ D LC  G + KA +L   M+    
Sbjct: 404 VGDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               +TY ++I G C      EA+ +F +M  QG+  N +TFN +++ LCK+ K+D+A  
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  MI  G++P+   YN+++  +C  G + +A ++  +M +NG   DV +YG LING C
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    + AL +   M  KG+RPT   YN
Sbjct: 578 KAGRTQVALKVLRGMRIKGMRPTPKAYN 605



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L   L +     T + + + ++S G+ PD  T+  L+  F + G +     V
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+L    +   VT   LI G C   R+ +A     +  A G +PD  TY T +NGLC+
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 298

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             H   AL + + M     +      PD  TY+ + + LCK G +++AK +  +M D   
Sbjct: 299 NDHVGHALKVMDVMVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGC 352

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ T+ +LI   C  N   EA  L  ++  +GV P+V TFN+++N LCK G    A R
Sbjct: 353 LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALR 412

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M   G  PD   YNTL+D  C  G++ +A +L   MES GC R   +Y  +I+G C
Sbjct: 413 LFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   IE A  ++ +M  +GI    +T+NT
Sbjct: 473 KKMRIEEAEEVFDQMDLQGISRNAITFNT 501



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 164/328 (50%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L   L      +  L L +++   G+ PD+YT+NILIN  CK+G       +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S  TPD VT+ +LI  LC+  ++ +A  L   + + GC     TY T+I+GLC+
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F++M     +   + + +AIT++T+ DGLCK+  +D A EL  +M  E +
Sbjct: 474 KMRIEEAEEVFDQM-----DLQGISR-NAITFNTLIDGLCKDKKIDDAFELINQMISEGL 527

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +TY S++  +C   D  +A  +   M   G + +VVT+  ++N LCK G+   A +
Sbjct: 528 QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALK 587

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  M   G+RP    YN ++        +  A  LF  M   G   D  +Y I+  G C
Sbjct: 588 VLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLC 647

Query: 315 K-NKEIEGALSLYSEMLSKGIRPTVVTY 341
           +    I+ A     EM+ KG  P   ++
Sbjct: 648 RGGGPIKEAFDFMLEMVDKGFIPEFSSF 675



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 159/358 (44%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L     +    +  L +  R+  +G      T N+LIN +CK+GRV      
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + + +   F PD +T+ + + GLC    +  A  +   +   G  PDVFTY  ++N LC+
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 135 TGHTIVALNLFEEMANG---------NGEFGVVC--------------------KPDAIT 165
            G    A  +  +M +          N     +C                     PD  T
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYT 393

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ + + LCK G    A  LF +MK+    PD VTY +LI   C      +A  L  +M 
Sbjct: 394 FNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME 453

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G   + +T+N I++ LCK  +++EA  + + M   G+  +A  +NTL+DG C   +++
Sbjct: 454 STGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKID 513

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A EL   M S G   +  +Y  ++  YCK  +I+ A  +   M + G    VVTY T
Sbjct: 514 DAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGT 571



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 141/293 (48%), Gaps = 41/293 (13%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D V +  L+  L   S++    ++++++ A G KPDV T+ TL+  LCR      A+ + 
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIML 204

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD-------------- 191
           EEM++     GV   PD  T++T+  G  +EG ++ A  +  +M +              
Sbjct: 205 EEMSS----RGVA--PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLI 258

Query: 192 ---------------------ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
                                +   PD +TY + + G C  +    A  +   M+ +G  
Sbjct: 259 NGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHD 318

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+V T+N+++N LCKNG+++EA  +L  M+  G  PD + +NTL+   C   R+  A +L
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +   G   DV+++ ILIN  CK  +   AL L+ EM + G  P  VTYNT
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 431



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           FG + D   Y  L+N L       +  +++ EM    G  G+  KPD +T++T+   LC+
Sbjct: 140 FGIQADTVVYNHLLNVLVEGSKMKLLESVYSEM----GARGI--KPDVVTFNTLMKALCR 193

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
              V  A  +  +M    + PD  T+T+L++GF        A  +   M++ G     VT
Sbjct: 194 AHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVT 253

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            NV++N  CK G++++A   ++  I  G  PD   YNT ++G C    V  A ++   M 
Sbjct: 254 VNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMV 313

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   DVF+Y I++N  CKN ++E A  + ++M+ +G  P + T+NT
Sbjct: 314 QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 7/249 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P    ++N +   L K    +    +F +++  G+  +  T+N LI+  CK  ++   F 
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++ +++     P+ +T+ S++   C +  I +AA +   + A G + DV TY TLINGLC
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T VAL +   M           +P    Y+ +   L +   +  A  LF +M +  
Sbjct: 578 KAGRTQVALKVLRGMRIKG------MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631

Query: 194 INPDVVTYTSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
             PD +TY  + RG C       EA    +EM+D+G  P   +F ++   L   G  D  
Sbjct: 632 EPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYF 691

Query: 253 SRLLELMIQ 261
            R +E++++
Sbjct: 692 IRAIEIIME 700



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK-MGRV 68
           M P+P    ++N +   L +  +    LSLF+ +  +G  PD  TY I+    C+  G +
Sbjct: 597 MRPTPK---AYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI 653

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
              F  +  ++   F P+  +F  L +GL
Sbjct: 654 KEAFDFMLEMVDKGFIPEFSSFRMLAEGL 682


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 200/378 (52%), Gaps = 40/378 (10%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ +L+ +P+PP +  FN + G L K+KHY TVL L +++   G+ P+L   NILIN F
Sbjct: 49  LFNRLLQQNPTPPNI-EFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSF 107

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME----------AAALFTK 112
           C++G +   F VL +IL+  + P+ +T  +LIKGLC   +I +          A  LF K
Sbjct: 108 CQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNK 167

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-------------- 158
           +      PDV+T+T L++G C+ G    A N+   M     + GVV              
Sbjct: 168 MILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQ 227

Query: 159 ---------------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
                            PD  +YS + +G CK   +D+A EL  +M  + I P+VVTY+S
Sbjct: 228 VNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSS 287

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           LI G C +   + A  L  EM D+G  PN+VT++ I++ LCKN ++D A  LL  M   G
Sbjct: 288 LIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQG 347

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           ++P+   Y  L+ G C +G++  A+++F  +   G   +V++Y ++I G+C     + AL
Sbjct: 348 IQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEAL 407

Query: 324 SLYSEMLSKGIRPTVVTY 341
           +L S+M   G  P   TY
Sbjct: 408 TLLSKMEDNGCIPNAKTY 425



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 175/340 (51%), Gaps = 15/340 (4%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF---------PD 51
           F +   +L+M   P  +    ++ G     K +D    + K  +++ LF         PD
Sbjct: 117 FSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPD 176

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
           +YT+ IL++ FCK GRV     VL  ++     P  VT+ SL+ G     ++ +A ++F 
Sbjct: 177 VYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFN 236

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
            +   G  PD+ +Y+ LING C+      A+ L +EM +          P+ +TYS++ D
Sbjct: 237 TMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQ------IIPNVVTYSSLID 290

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           GLCK G +  A +L  +M D    P++VTY+S++   C  +  + A  L  +M +QG+QP
Sbjct: 291 GLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQP 350

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N+ T+ +++  LC++GK+++A ++ E ++  G   +   Y  ++ GFC  G  + A  L 
Sbjct: 351 NMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLL 410

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             ME NGC+ +  +Y I+I    K  E E A  L  EM+ 
Sbjct: 411 SKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIE 450



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 144/286 (50%), Gaps = 16/286 (5%)

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +  R+L+   TP  + F  ++  L           L  K+   G KP++     
Sbjct: 43  VDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 102

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV-DK----- 181
           LIN  C+ GH   A ++  ++        +  KP+ IT +T+  GLC  G + DK     
Sbjct: 103 LINSFCQLGHIPSAFSVLTKI------LKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVG 156

Query: 182 ----AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
               A +LF KM  ENINPDV T+T L+ GFC      EAK +   MM QG++P VVT+N
Sbjct: 157 KLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYN 216

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +M+      ++++A  +   M Q+GV PD   Y+ L++GFC    ++ A EL   M   
Sbjct: 217 SLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHK 276

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             + +V +Y  LI+G CK+ +I  AL L  EM  +G  P +VTY++
Sbjct: 277 QIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSS 322



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 142/276 (51%), Gaps = 6/276 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+ +    P V ++N L       K  +   S+F  +  +G+ PD+ +Y+ILIN FCK+ 
Sbjct: 202 MMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIK 261

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     +L  +      P+ VT++SLI GLC   +I  A  L  ++   G  P++ TY+
Sbjct: 262 MMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYS 321

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           ++++ LC+      A+ L  +M N         +P+  TY+ +  GLC+ G ++ A+++F
Sbjct: 322 SILDALCKNHQVDNAIALLTQMKNQG------IQPNMYTYTILIKGLCQSGKLEDARKVF 375

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             +  +  N +V TYT +I+GFC    ++EA  L  +M D G  PN  T+ +I+  L K 
Sbjct: 376 EDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKK 435

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
            + + A +LL  MI+       ++ N L+    +TG
Sbjct: 436 DENEMAEKLLCEMIETNFDGRVALTNDLIASIWVTG 471



 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 45/98 (45%)

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           N  +D+A  L   ++Q    P    +N ++     +   +    L   ME  G   ++ +
Sbjct: 40  NNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVN 99

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ILIN +C+   I  A S+ +++L  G +P  +T NT
Sbjct: 100 CNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNT 137


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 193/371 (52%), Gaps = 30/371 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           +  ++ ML    SP  V ++N +   L K +  D  + +   +   G+ PD  TYN +++
Sbjct: 108 YSTYNEMLDQRISPN-VVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVH 166

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FC  G+     V L ++      PD VT+ SL+  LC   R  EA  +F  +   G KP
Sbjct: 167 GFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKP 226

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMA-NG----NGEFGV-VC--------------- 159
           ++ TY TL+ G    G  +    L + M  NG    +  F + VC               
Sbjct: 227 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVF 286

Query: 160 --------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    P+A+TY  +   LCK G V+ A   F +M DE ++P  + Y SLI G C  
Sbjct: 287 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 346

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N W  A+ L +EM+D+G+  N + FN I++  CK G++ E+ +L +LM++IGV+PD   Y
Sbjct: 347 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 406

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           +TL+DG+CL G+++ A +L  SM S G   D  +Y  LINGYCK   ++ AL L+ EM S
Sbjct: 407 STLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMES 466

Query: 332 KGIRPTVVTYN 342
            G+ P ++TYN
Sbjct: 467 SGVSPDIITYN 477



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 175/340 (51%), Gaps = 6/340 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F   +R     P V ++N L   L KN        +F  +   GL P++ TY  L+  +
Sbjct: 179 VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGY 238

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +     +L  ++R+   P+   F+ L+     + ++ EA  +F+K+R  G  P+ 
Sbjct: 239 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNA 298

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +I  LC++G    A+  FE+M +          P  I Y+++  GLC     ++A
Sbjct: 299 VTYGAVIGILCKSGRVEDAMLYFEQMIDEG------LSPGNIVYNSLIHGLCTCNKWERA 352

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +EL L+M D  I  + + + S+I   C      E++ LF  M+  GV+P+++T++ +++ 
Sbjct: 353 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 412

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  GKMDEA++LL  M+ +G++PD   Y+TL++G+C   R+  A  LF  MES+G   D
Sbjct: 413 YCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPD 472

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +Y I++ G  + +    A  LY  +   G +  + TYN
Sbjct: 473 IITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYN 512



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 141/259 (54%), Gaps = 8/259 (3%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLINGLCRTGHTIVAL 142
           PD  ++  L+ GLC E+R  EA  L   +   G  C PDV +Y+T+ING  + G      
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTY 108

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
           + + EM +          P+ +TY++I   LCK   VDKA E+   M    + PD +TY 
Sbjct: 109 STYNEMLDQR------ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYN 162

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           S++ GFC +    EA     +M   GV+P+VVT+N +M+ LCKNG+  EA ++ + M + 
Sbjct: 163 SIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKR 222

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G++P+ + Y TL+ G+   G +     L   M  NG   + + + IL+  Y K +++E A
Sbjct: 223 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA 282

Query: 323 LSLYSEMLSKGIRPTVVTY 341
           + ++S+M  +G+ P  VTY
Sbjct: 283 MLVFSKMRQQGLNPNAVTY 301



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 172/340 (50%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M +     P + ++  L    A       +  L   +   G+ P+ Y ++IL+  +
Sbjct: 215 IFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAY 273

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K  +V    +V  ++ +    P+AVT+ ++I  LC   R+ +A   F ++   G  P  
Sbjct: 274 AKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 333

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y +LI+GLC       A  L  EM +       +C  + I +++I D  CKEG V ++
Sbjct: 334 IVYNSLIHGLCTCNKWERAEELILEMLDRG-----IC-LNTIFFNSIIDSHCKEGRVIES 387

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++LF  M    + PD++TY++LI G+C A   +EA  L   M+  G++P+ VT++ ++N 
Sbjct: 388 EKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLING 447

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK  +M +A  L   M   GV PD   YN ++ G   T R   AKEL+V +  +G   +
Sbjct: 448 YCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLE 507

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +Y I+++G CKNK  + AL ++  +    ++    T+N
Sbjct: 508 LSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFN 547



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 46/368 (12%)

Query: 3   IFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + D M+R  +HP+      F+IL    AK +  +  + +F ++   GL P+  TY  +I 
Sbjct: 250 LLDLMVRNGIHPNH---YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIG 306

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA--------------------- 99
             CK GRV    +   +++    +P  + + SLI GLC                      
Sbjct: 307 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 366

Query: 100 --------------ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
                         E R++E+  LF  +   G KPD+ TY+TLI+G C  G    A  L 
Sbjct: 367 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 426

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
             M +      V  KPD +TYST+ +G CK   +  A  LF +M+   ++PD++TY  ++
Sbjct: 427 ASMVS------VGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIIL 480

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
           +G         AK L++ +   G Q  + T+N+I++ LCKN   D+A R+ + +  + ++
Sbjct: 481 QGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLK 540

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
            +A  +N ++D     GR + AK+LFV+  SNG + + ++Y ++         +E    L
Sbjct: 541 LEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQL 600

Query: 326 YSEMLSKG 333
           +  M   G
Sbjct: 601 FLSMEDNG 608



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 2/185 (1%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN--PDVVTYTSLIRGFCYANDWNEAK 218
           PD  +Y+ + +GLC E    +A EL   M D+  +  PDVV+Y+++I GF    D ++  
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTY 108

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
             + EM+DQ + PNVVT+N I+  LCK   +D+A  +L  M++ GV PD   YN+++ GF
Sbjct: 109 STYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 168

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C +G+   A      M S+G   DV +Y  L++  CKN     A  ++  M  +G++P +
Sbjct: 169 CSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEI 228

Query: 339 VTYNT 343
            TY T
Sbjct: 229 TTYGT 233



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 130/275 (47%), Gaps = 9/275 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +FD M+R+   P  +    ++ G CLA     D    L   + S+G+ PD  TY+ LIN 
Sbjct: 390 LFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYSTLING 447

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +CK+ R+    V+   +  S  +PD +T+  +++GL    R   A  L+  +   G + +
Sbjct: 448 YCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLE 507

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY  +++GLC+   T  AL +F+ +   +       K +A T++ + D L K G  D+
Sbjct: 508 LSTYNIILHGLCKNKLTDDALRMFQNLCLMD------LKLEARTFNIMIDALLKVGRNDE 561

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK+LF+      + P+  TY  +           E   LF+ M D G   +    N I+ 
Sbjct: 562 AKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 621

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           EL + G++  A   L ++ +     +AS  +  +D
Sbjct: 622 ELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 656


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/348 (35%), Positives = 190/348 (54%), Gaps = 14/348 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNK---HYDTVLSLFKRLN---SIGLFPDLYTYN 56
           +FD ML  H  P  V +FN L   +++ +     + V+SLF R+    SI + P  +TY 
Sbjct: 38  LFDEML-THARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPSSFTYT 96

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCF-TPDAVTFTSLIKGLCAESRIMEAA-ALFTKLR 114
           ILI CFC+MGR+  GF   G IL++ +   D V F+ L+KGLC   R+ EA   L  ++ 
Sbjct: 97  ILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMP 156

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN-GNGEFGVVCKPDAITYSTITDGL 173
            FGC PDVF+Y+ L+ G C       AL L   MA+ G+G       P+ +TY+T+ DGL
Sbjct: 157 EFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSH----TPNVVTYTTVIDGL 212

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK   VD+AK +F  M D+ + P+  TYT LI G+     W E   +  EM   G+QP+ 
Sbjct: 213 CKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDC 272

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
             + V+++ LCKNG+  EA  + + +I+ G++P+ ++Y  L+ G+   G ++        
Sbjct: 273 YIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDL 332

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           M  NG   D   + I+   Y K   I+ A+ ++ +M  + + P +VTY
Sbjct: 333 MVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTY 380



 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 187/341 (54%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F +M+     P       ++ G L+  K +  V+ + + +++ GL PD Y Y +L++  
Sbjct: 224 VFQHMIDKGVRPNNHTYTCLIHGYLSIGK-WKEVVQMLQEMSTHGLQPDCYIYAVLLDYL 282

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR +    +   ++R    P+   +  L+ G   E  + E  +    +   G  PD 
Sbjct: 283 CKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDH 342

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             +  +     +      A+++F++M            P+ +TY  + D LCK G VD A
Sbjct: 343 HIFNIMFCAYAKKAMIDEAMHIFDKMRQQR------LSPNIVTYGALIDALCKLGRVDDA 396

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
              F +M DE + PD+  ++SL+ G C  + W +A+ LF E++DQG++ + V FN +M  
Sbjct: 397 VLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCN 456

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+ G++ EA RL++LM+++GVRPD   YNTL+DG CLTGR++ A +L   + S G   D
Sbjct: 457 LCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPD 516

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y  L++GYCK + I+ A SL+ EML KG+ P VVTYNT
Sbjct: 517 KVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNT 557



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 171/327 (52%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    FNI+F   AK    D  + +F ++    L P++ TY  LI+  CK+GRV    + 
Sbjct: 340 PDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLK 399

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++    TPD   F+SL+ GLC   +  +A  LF ++   G + D   + TL+  LCR
Sbjct: 400 FNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCR 459

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  L + M        V  +PD I+Y+T+ DG C  G +D+A +L   +    +
Sbjct: 460 EGRVMEAQRLIDLM------LRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGL 513

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY +L+ G+C A   ++A  LF EM+ +G+ P+VVT+N I++ L + G+  EA  
Sbjct: 514 KPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKE 573

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   MI    + +   YN +++G C    V+ A ++F S+ S     D+F+  I+I    
Sbjct: 574 LYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALL 633

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K    E A+ L++ + + G+ P V TY
Sbjct: 634 KGGRKEDAMDLFATISAYGLVPDVETY 660



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 145/306 (47%), Gaps = 6/306 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN L   L +         L   +  +G+ PD+ +YN L++  C  GR+     +L  I+
Sbjct: 450 FNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIV 509

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                PD VT+ +L+ G C   RI +A +LF ++   G  PDV TY T+++GL +TG   
Sbjct: 510 SIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFS 569

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L+  M N   +  +       TY+ I +GLCK  FVD+A ++F  +  +++  D+ 
Sbjct: 570 EAKELYLSMINSRTQMNIY------TYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIF 623

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T   +I          +A  LF  +   G+ P+V T+ +I   L K G ++E   L   M
Sbjct: 624 TANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAM 683

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + G  P++ + N L+      G +NRA      ++      +  +  +LI+ Y + +  
Sbjct: 684 EENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSMLISIYSRGEYQ 743

Query: 320 EGALSL 325
           + A SL
Sbjct: 744 QLAKSL 749



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 49/120 (40%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++NI+   L KN   D    +F  L S  L  D++T NI+I    K GR      +  
Sbjct: 587 IYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFA 646

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            I      PD  T+  + + L  E  + E   LF+ +   G  P+      L+  L   G
Sbjct: 647 TISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRG 706


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 188/366 (51%), Gaps = 42/366 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++N +   L+K+   D  + L + +   G  P++++YN +++ FCK  RV     
Sbjct: 41  PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALW 100

Query: 74  VLGR-ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           +L + ++R C  PD V++T++I GLC   ++ EA  +  K+   GC+P+V TY TL++G 
Sbjct: 101 LLEQMVMRGC-PPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGF 159

Query: 133 CRTG----------------------------HTIV-------ALNLFEEMANGNGEFGV 157
           CR G                            H +        AL LF+EM         
Sbjct: 160 CRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGS---- 215

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
            C PD  TYSTI D L K G VD A  L   M  +  +P+VVTY+SL+ G C A   +EA
Sbjct: 216 -CPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEA 274

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             L   M   G  PN+VT+N I++  CK G++DEA  LLE M+  G +P+   Y  L+D 
Sbjct: 275 TALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDA 334

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           FC  G+   A  L   M   G + ++F+Y  L++ +CK  E+E A  L S M+ KG  P 
Sbjct: 335 FCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPN 394

Query: 338 VVTYNT 343
           VV+YNT
Sbjct: 395 VVSYNT 400



 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 187/335 (55%), Gaps = 7/335 (2%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           M   PP V S+  +   L K    D    +  ++   G  P++ TY  L++ FC++G + 
Sbjct: 107 MRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLD 166

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTL 128
               ++ ++    + P+A+T+ +++ GLC+  ++  A  LF ++   G C PDVFTY+T+
Sbjct: 167 GAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTI 226

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           ++ L ++G    A  L E M +        C P+ +TYS++  GLCK G +D+A  L  +
Sbjct: 227 VDSLVKSGKVDDACRLVEAMVSKG------CSPNVVTYSSLLHGLCKAGKLDEATALLQR 280

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M     +P++VTY ++I G C     +EA  L  EM+D G QPNVVT+ V+++  CK GK
Sbjct: 281 MTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 340

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
            ++A  L+E+M++ G  P+   YN+L+D FC    V RA +L  SM   GC+ +V SY  
Sbjct: 341 AEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNT 400

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +I G CK  ++   + L  +MLS    P +VT+NT
Sbjct: 401 VIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNT 435



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 182/331 (54%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFP-DLYTYNILINCFCKMGRVSPGFV 73
           P   ++N +   L   +  D+ L LFK +   G  P D++TY+ +++   K G+V     
Sbjct: 182 PNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACR 241

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++  ++    +P+ VT++SL+ GLC   ++ EA AL  ++   GC P++ TY T+I+G C
Sbjct: 242 LVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHC 301

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A +L EEM +G       C+P+ +TY+ + D  CK G  + A  L   M ++ 
Sbjct: 302 KLGRIDEAYHLLEEMVDGG------CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKG 355

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P++ TY SL+  FC  ++   A  L   M+ +G  PNVV++N ++  LCK  K+ E  
Sbjct: 356 YVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGV 415

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LLE M+     PD   +NT++D  C T RV+ A ELF  ++ +GC  ++ +Y  L++G 
Sbjct: 416 LLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 475

Query: 314 CKNKEIEGALSLYSEMLSK-GIRPTVVTYNT 343
           CK++  + A  L  EM  K G  P ++TYNT
Sbjct: 476 CKSRRFDQAEYLLREMTRKQGCSPDIITYNT 506



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 186/341 (54%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M      PP V +++ +   L K+   D    L + + S G  P++ TY+ L++  
Sbjct: 206 LFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGL 265

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G++     +L R+ RS  +P+ VT+ ++I G C   RI EA  L  ++   GC+P+V
Sbjct: 266 CKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNV 325

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT L++  C+ G    A+ L E M     E G V  P+  TY+++ D  CK+  V++A
Sbjct: 326 VTYTVLLDAFCKCGKAEDAIGLVEVMV----EKGYV--PNLFTYNSLLDMFCKKDEVERA 379

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L   M  +   P+VV+Y ++I G C A   +E   L  +M+     P++VTFN I++ 
Sbjct: 380 CQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 439

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMR 301
           +CK  ++D A  L  L+ + G  P+   YN+L+ G C + R ++A+ L   M    GC  
Sbjct: 440 MCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSP 499

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           D+ +Y  +I+G CK+K ++ A  L+ +MLS G+ P  VTY+
Sbjct: 500 DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYS 540



 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 168/329 (51%), Gaps = 5/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     K    +    L   +   G  P++ +YN +I   CK  +V  G ++
Sbjct: 358 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLL 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L +   PD VTF ++I  +C   R+  A  LF  ++  GC P++ TY +L++GLC+
Sbjct: 418 LEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 477

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A  L  EM    G     C PD ITY+T+ DGLCK   VD+A +LFL+M  + +
Sbjct: 478 SRRFDQAEYLLREMTRKQG-----CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 532

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY+ +I   C     +EA  +   M+  G  P  +T+  +++  CK G +D+A  
Sbjct: 533 APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALE 592

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+L++  G  PD   ++  +D     GR+ +A EL  +M   G + D  +Y  L+ G+C
Sbjct: 593 ILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFC 652

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                E A+ L+  M   G  P   TY T
Sbjct: 653 DASRTEDAVDLFEVMRQCGCEPDNATYTT 681



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 8/323 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N +   L K       + L +++ S    PD+ T+N +I+  CK  RV   + +
Sbjct: 393 PNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYEL 452

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLC 133
              I  S  TP+ VT+ SL+ GLC   R  +A  L  ++ R  GC PD+ TY T+I+GLC
Sbjct: 453 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 512

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           ++     A  LF +M +          PD +TYS +   LCK  F+D+A  +   M    
Sbjct: 513 KSKRVDRAYKLFLQMLSDG------LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNG 566

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +P  +TY +LI GFC   + ++A  +   ++ +G  P+VVTF++ ++ L K G++ +A 
Sbjct: 567 FDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAG 626

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LLE M++ G+ PD   YNTL+ GFC   R   A +LF  M   GC  D  +Y  L+   
Sbjct: 627 ELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 686

Query: 314 CKNKEIEGALSLYSE-MLSKGIR 335
              K  +  L+  S+ M+  G +
Sbjct: 687 VDKKSYKDLLAEVSKSMVDTGFK 709



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 126/228 (55%), Gaps = 8/228 (3%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G K     + +++ GLC  G    A+  F EM+         C PD++TY+T+ +GL K 
Sbjct: 5   GLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSK-------TCPPDSVTYNTMINGLSKS 57

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
             +D A  L  +M D    P+V +Y +++ GFC AN    A  L  +M+ +G  P+VV++
Sbjct: 58  DRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSY 117

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             ++N LCK  ++DEA R+++ MIQ G +P+   Y TL+DGFC  G ++ A EL   M  
Sbjct: 118 TTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE 177

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG-IRPTVVTYNT 343
            G   +  +Y  +++G C  ++++ AL L+ EM   G   P V TY+T
Sbjct: 178 RGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYST 225



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 6/199 (3%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M R     P + ++N +   L K+K  D    LF ++ S GL PD  TY+I+I+  CK  
Sbjct: 491 MTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWR 550

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     VL  +L++ F P A+T+ +LI G C    + +A  +   L + G  PDV T++
Sbjct: 551 FMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFS 610

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
             I+ L + G    A  L E M       G+V  PD +TY+T+  G C     + A +LF
Sbjct: 611 IFIDWLSKRGRLRQAGELLETMLRA----GLV--PDTVTYNTLLKGFCDASRTEDAVDLF 664

Query: 187 LKMKDENINPDVVTYTSLI 205
             M+     PD  TYT+L+
Sbjct: 665 EVMRQCGCEPDNATYTTLV 683


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 180/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N     L +N H    L +   +   G  PD++TYNI++NC CK G++     +
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 343

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++     PD  TF +LI  LC  +R+ EA  L  ++   G  PDV+T+  LIN LC+
Sbjct: 344 LNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +AL LFEEM N        C PD +TY+T+ D LC  G + KA +L   M+    
Sbjct: 404 VGDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               +TY ++I G C      EA+ +F +M  QG+  N +TFN +++ LCK+ K+D+A  
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFG 517

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  MI  G++P+   YN+++  +C  G + +A ++  +M +NG   DV +YG LING C
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    + AL +   M  KG+RPT   YN
Sbjct: 578 KAGRTQVALKVLRGMRIKGMRPTPKAYN 605



 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L   L +     T + + + ++S G+ PD  T+  L+  F + G +     V
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+L    +   VT   LI G C   R+ +A     +  A G +PD  TY T +NGLC+
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 298

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             H   AL + + M     +      PD  TY+ + + LCK G +++AK +  +M D   
Sbjct: 299 NDHVGHALKVMDVMVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGC 352

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ T+ +LI   C  N   EA  L  ++  +GV P+V TFN+++N LCK G    A R
Sbjct: 353 LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALR 412

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M   G  PD   YNTL+D  C  G++ +A +L   MES GC R   +Y  +I+G C
Sbjct: 413 LFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   IE A  ++ +M  +GI    +T+NT
Sbjct: 473 KKMRIEEAEEVFDQMDLQGISRNAITFNT 501



 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 163/328 (49%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L   L      +  L L +++   G+ PD+YT+NILIN  CK+G       +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S  TPD VT+ +LI  LC+  ++ +A  L   + + GC     TY T+I+GLC+
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCK 473

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F++M     +   + + +AIT++T+ DGLCK+  +D A  L  +M  E +
Sbjct: 474 KMRIEEAEEVFDQM-----DLQGISR-NAITFNTLIDGLCKDKKIDDAFGLINQMISEGL 527

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +TY S++  +C   D  +A  +   M   G + +VVT+  ++N LCK G+   A +
Sbjct: 528 QPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALK 587

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  M   G+RP    YN ++        +  A  LF  M   G   D  +Y I+  G C
Sbjct: 588 VLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLC 647

Query: 315 K-NKEIEGALSLYSEMLSKGIRPTVVTY 341
           +    I+ A     EM+ KG  P   ++
Sbjct: 648 RGGGPIKEAFDFMLEMVDKGFIPEFSSF 675



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 141/293 (48%), Gaps = 41/293 (13%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D V +  L+  L   S++    ++++++ A G KPDV T+ TL+  LCR      A+ + 
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 204

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD-------------- 191
           EEM++     GV   PD  T++T+  G  +EG ++ A  +  +M +              
Sbjct: 205 EEMSS----RGVA--PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLI 258

Query: 192 ---------------------ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
                                +   PD +TY + + G C  +    A  +   M+ +G  
Sbjct: 259 NGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHD 318

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+V T+N+++N LCKNG+++EA  +L  M+  G  PD + +NTL+   C   R+  A +L
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +   G   DV+++ ILIN  CK  +   AL L+ EM + G  P  VTYNT
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 431



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           FG + D   Y  L+N L       +  +++ EM    G  G+  KPD +T++T+   LC+
Sbjct: 140 FGIQADTVVYNHLLNVLVEGSKMKLLESVYSEM----GARGI--KPDVVTFNTLMKALCR 193

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
              V  A  +  +M    + PD  T+T+L++GF        A  +   M++ G     VT
Sbjct: 194 AHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVT 253

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            NV++N  CK G++++A   ++  I  G  PD   YNT ++G C    V  A ++   M 
Sbjct: 254 VNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMV 313

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   DVF+Y I++N  CKN ++E A  + ++M+ +G  P + T+NT
Sbjct: 314 QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 7/249 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P    ++N +   L K    +    +F +++  G+  +  T+N LI+  CK  ++   F 
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFG 517

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++ +++     P+ +T+ S++   C +  I +AA +   + A G + DV TY TLINGLC
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T VAL +   M           +P    Y+ +   L +   +  A  LF +M +  
Sbjct: 578 KAGRTQVALKVLRGMRIKG------MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631

Query: 194 INPDVVTYTSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
             PD +TY  + RG C       EA    +EM+D+G  P   +F ++   L   G  D  
Sbjct: 632 EPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYF 691

Query: 253 SRLLELMIQ 261
            R +E++++
Sbjct: 692 IRAIEIIME 700



 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK-MGRV 68
           M P+P    ++N +   L +  +    LSLF+ +  +G  PD  TY I+    C+  G +
Sbjct: 597 MRPTPK---AYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPI 653

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
              F  +  ++   F P+  +F  L +GL
Sbjct: 654 KEAFDFMLEMVDKGFIPEFSSFRMLAEGL 682


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/328 (37%), Positives = 183/328 (55%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN+L   L+K  H    L +   +   G  PD+YTYN LI+  CK+G V     V
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKV 358

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++    +P+ VT+ ++I  LC E+++ EA  L   L   G  PDV TY +LI GLC 
Sbjct: 359 LNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCL 418

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           + +  VA+ L++EM          C PD  TY+ + D LC  G + +A  L  +M+    
Sbjct: 419 SRNHTVAMELYKEMKTKG------CHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGC 472

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +V+TY +LI GFC      EA+ +F +M  QGV  N VT+N +++ LCK+ +++EAS+
Sbjct: 473 ARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQ 532

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ MI  G+RPD   YN+L+  FC  G + +A ++  +M S+GC  D+ +YG LI G C
Sbjct: 533 LMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLC 592

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +E A  L   +  KGI  T   YN
Sbjct: 593 KAGRVEAATKLLRTIQMKGINLTPHAYN 620



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 180/365 (49%), Gaps = 42/365 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG------RV 68
           P V +FNIL   L +       + L + +   GL PD  T+  ++  F + G      RV
Sbjct: 193 PDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRV 252

Query: 69  SP-------------------GFVVLGRI-----------LRSCFTPDAVTFTSLIKGLC 98
                                GF   GRI           LR  F PD  TF  L+ GL 
Sbjct: 253 KEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLS 312

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
               +  A  +   +   G  PD++TY +LI+GLC+ G    A+ +  +M   +      
Sbjct: 313 KTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERD------ 366

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C P+ +TY+TI   LCKE  V++A +L L +  + I PDV TY SLI+G C + +   A 
Sbjct: 367 CSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAM 426

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L+ EM  +G  P+  T+N++++ LC  GK+ EA  LL+ M   G   +   YNTL+DGF
Sbjct: 427 ELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGF 486

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   R+  A+E+F  ME  G  R+  +Y  LI+G CK++ +E A  L  +M+ +G+RP  
Sbjct: 487 CKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDK 546

Query: 339 VTYNT 343
            TYN+
Sbjct: 547 FTYNS 551



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/297 (35%), Positives = 149/297 (50%), Gaps = 6/297 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G FPD YT+N+L+N   K G V     V+  +LR  F PD  T+ SLI GLC    + EA
Sbjct: 296 GFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEA 355

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +  ++    C P+  TY T+I+ LC+      A  L   +  G G       PD  TY
Sbjct: 356 VKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKL-ALVLTGKGIL-----PDVCTY 409

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +++  GLC       A EL+ +MK +  +PD  TY  LI   C+     EA  L  EM  
Sbjct: 410 NSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEV 469

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   NV+T+N +++  CKN ++ EA  + + M   GV  ++  YNTL+DG C + RV  
Sbjct: 470 SGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEE 529

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A +L   M   G   D F+Y  L+  +CK  +I+ A  +   M S G  P +VTY T
Sbjct: 530 ASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGT 586



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 111/260 (42%), Gaps = 48/260 (18%)

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FT T L++ L R   +   ++LF   A+    F    KP +  +  +   L K G  D  
Sbjct: 54  FTPTQLLHSLRREEDSSAVIHLFY-WASKQPNF----KPSSSIFKEVLHKLGKAGEFDAM 108

Query: 183 KELFLKMKDENINPDVVTYTSL---IRGFCYANDWNEA---------------------- 217
           K++  +MK   I+  V+   SL   I  +     +NE                       
Sbjct: 109 KDILKEMK---ISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNF 165

Query: 218 ---------KCLFIE-----MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
                    K   +E     M+ +G++P+V TFN+++  LC+  ++  A  L+E M   G
Sbjct: 166 LLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFG 225

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           + PD   + T+M GF   G ++ A  +   M   GC+    +  +L+NG+CK   IE AL
Sbjct: 226 LLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEAL 285

Query: 324 SLYSEM-LSKGIRPTVVTYN 342
               EM L +G  P   T+N
Sbjct: 286 RFIEEMSLREGFFPDKYTFN 305


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 192/372 (51%), Gaps = 30/372 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD ML    SP  V ++N +   L+K +  D    +  R+   G  P+  T+N L++
Sbjct: 223 YHLFDQMLDQGLSPD-VVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLH 281

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +C  G+ +    V  R+ R    PD  T+ +L+  LC   R MEA  +F  +   G KP
Sbjct: 282 GYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKP 341

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMA-NG--------NGEFGVVCK----------- 160
           +  TY TL++G    G  +   +L + M  NG        N   G   K           
Sbjct: 342 NSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLF 401

Query: 161 ---------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    PD +TY  + D LC  G VD A   F ++  E + PD V + +LI G C  
Sbjct: 402 SKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCAR 461

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           + W++A+ L +EM+ +G+ PN + FN ++N LCK G +  A  + +LM+++ V+ D   Y
Sbjct: 462 DKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITY 521

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           NTL+DG+CL G+V+ A +L   M  +G   +  +Y  +INGYCKN  IE A SL+ +M S
Sbjct: 522 NTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMAS 581

Query: 332 KGIRPTVVTYNT 343
           KG+ P +VTY+T
Sbjct: 582 KGVNPGIVTYST 593



 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 199/378 (52%), Gaps = 43/378 (11%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILIN 60
           FD +L   P+   +   N      A++      +SLF+R+  +    + P+L TY+++I+
Sbjct: 42  FDELLH-RPTTSSIVDLNRALSDAARHSPA-VAISLFRRMVMVARPKVPPNLITYSVVID 99

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGCK 119
           C  ++G +   F  LGR++RS +T +A+TF+ L+K LC + R  EA  +   ++   GC 
Sbjct: 100 CCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCT 159

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF- 178
           P+VF+YT L+ GLC    +  AL+L   M   +   G    PD ++Y+T+ +GL +EG  
Sbjct: 160 PNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGY-PPDVVSYNTVINGLLREGRQ 218

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLI--------------------------------- 205
           +D A  LF +M D+ ++PDVVTY S+I                                 
Sbjct: 219 LDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNS 278

Query: 206 --RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
              G+C +   N+A  +F  M   GV+P+V T+N +M  LCKNG+  EA ++ + M++ G
Sbjct: 279 LLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG 338

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            +P+++ Y TL+ G+   G + +   L   M  NG   D + + ILI  Y K+ +++ A+
Sbjct: 339 HKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAM 398

Query: 324 SLYSEMLSKGIRPTVVTY 341
            L+S+M  +G+ P  VTY
Sbjct: 399 LLFSKMRRQGLNPDTVTY 416



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 173/339 (51%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R    P     FNIL G   K+   D  + LF ++   GL PD  TY I+++  
Sbjct: 365 LLDMMVRNGIQPDHYI-FNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDAL 423

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +G+V       GR++    TPDAV F +LI GLCA  +  +A  L  ++   G  P+ 
Sbjct: 424 CMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNN 483

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             + TL+N LC+ G    A N+F+ M        V  + D ITY+T+ DG C  G VD+A
Sbjct: 484 IFFNTLLNHLCKEGMVARAKNIFDLMVR------VDVQRDVITYNTLIDGYCLHGKVDEA 537

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L   M  + + P+ VTY ++I G+C      +A  LF +M  +GV P +VT++ I+  
Sbjct: 538 AKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQG 597

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L +  +   A  L   MI+ G++ D   YN ++ G C     + A  +F ++       +
Sbjct: 598 LFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLE 657

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             ++ I+I+   K    + A  L++ +L++G+ P VVTY
Sbjct: 658 NRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTY 696



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 169/332 (50%), Gaps = 17/332 (5%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-----CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNI 57
           IFD M++    P       +L G      L K  H      L   +   G+ PD Y +NI
Sbjct: 330 IFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHH------LLDMMVRNGIQPDHYIFNI 383

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           LI  + K G+V    ++  ++ R    PD VT+  ++  LC   ++ +A A F +L + G
Sbjct: 384 LIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEG 443

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
             PD   +  LI+GLC       A  L  EM  G G    +C P+ I ++T+ + LCKEG
Sbjct: 444 LTPDAVVFRNLIHGLCARDKWDKAEELAVEMI-GRG----IC-PNNIFFNTLLNHLCKEG 497

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            V +AK +F  M   ++  DV+TY +LI G+C     +EA  L   M+  GV+PN VT+N
Sbjct: 498 MVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYN 557

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            ++N  CKNG++++A  L   M   GV P    Y+T++ G     R   AKEL++ M  +
Sbjct: 558 TMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKS 617

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
           G   D+ +Y I++ G C+N   + AL ++  +
Sbjct: 618 GIKFDIGTYNIILLGLCQNNCTDDALRIFQNL 649



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 141/320 (44%), Gaps = 42/320 (13%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           +P  V   N++ G  A++K +D    L   +   G+ P+   +N L+N  CK G V+   
Sbjct: 445 TPDAVVFRNLIHGLCARDK-WDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAK 503

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   ++R     D +T+ +LI G C   ++ EAA L   +   G KP+  TY T+ING 
Sbjct: 504 NIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGY 563

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A +LF +MA+          P  +TYSTI  GL +      AKEL+L M   
Sbjct: 564 CKNGRIEDAFSLFRQMASKG------VNPGIVTYSTILQGLFQARRTAAAKELYLWMIKS 617

Query: 193 NINPDVVTYTSLIRGFCYAN-----------------------------------DWNEA 217
            I  D+ TY  ++ G C  N                                     +EA
Sbjct: 618 GIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEA 677

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           K LF  ++ +G+ PNVVT+ ++M  L + G ++E   L   + + G   ++ + N L+  
Sbjct: 678 KDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGK 737

Query: 278 FCLTGRVNRAKELFVSMESN 297
               G V +A      ++ N
Sbjct: 738 LLQKGEVRKAGVYLSKIDEN 757



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 128/273 (46%), Gaps = 7/273 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M+R+      V ++N L      +   D    L + +   G+ P+  TYN +IN +
Sbjct: 505 IFDLMVRVDVQRD-VITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGY 563

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR+   F +  ++      P  VT++++++GL    R   A  L+  +   G K D+
Sbjct: 564 CKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDI 623

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  ++ GLC+   T  AL +F+ +      + +    +  T++ + D L K G  D+A
Sbjct: 624 GTYNIILLGLCQNNCTDDALRIFQNL------YLIDFHLENRTFNIMIDALLKGGRHDEA 677

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K+LF  +    + P+VVTY  +++         E   LF+ +   G   N    N ++ +
Sbjct: 678 KDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGK 737

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           L + G++ +A   L  + +     +AS   +L+
Sbjct: 738 LLQKGEVRKAGVYLSKIDENNFSLEASTAESLV 770


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 185/328 (56%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N + G   K K  D    L + +   GL P+L TYN++IN  C++GR+     V
Sbjct: 236 PNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGV 295

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R  F PD VT+ +L+ G C      +A  L +++   G  PDV TYT+LIN +C+
Sbjct: 296 LAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCK 355

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+  F++M           +P+ +TY+++ +G  ++GF+D+A  ++ +M     
Sbjct: 356 AGNLNRAMEFFDQMHVRG------LRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGF 409

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +VTY +L+ G C +    EA  L   M  +G+ P+VV+++ I+   C+  ++D A +
Sbjct: 410 PPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQ 469

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M++ GV PDA  Y++L+ G C   R+N A +LF  M +   + D F+Y  LINGYC
Sbjct: 470 MNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYC 529

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K  ++  AL+L+ EM+ KG  P  VTYN
Sbjct: 530 KEGDLNEALNLHDEMIKKGFLPDTVTYN 557



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 180/342 (52%), Gaps = 21/342 (6%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++  L   + K  + +  +  F +++  GL P+  TY  LIN F + G +   + 
Sbjct: 340 PPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYR 399

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   ++RS F P  VT+ +L+ G C   R+ EA  L   +   G  PDV +Y+T+I G C
Sbjct: 400 IWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFC 459

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R      A  +  EM     E GV   PDAITYS++  GLC++  +++A +LF +M +++
Sbjct: 460 RYQELDRAFQMNAEMV----EKGV--SPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKS 513

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYTSLI G+C   D NEA  L  EM+ +G  P+ VT+NV++N L K  +  EA 
Sbjct: 514 LLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAK 573

Query: 254 RLLELMIQIGVRPDASVYNTLMD---------------GFCLTGRVNRAKELFVSMESNG 298
           RLL  +      P+   Y+TL++               GFC+ G +N A ++F SM    
Sbjct: 574 RLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRN 633

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
              +   Y ++I+G+C++  +  A  LY EM+  G  P  VT
Sbjct: 634 QKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVT 675



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 175/330 (53%), Gaps = 7/330 (2%)

Query: 15  PPVCSFNILFGCLAK-NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V S+N +   + +  K       +++ + + G+  ++++YNILI  FC  G +  G  
Sbjct: 165 PGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLR 224

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
               + R+   P+ VT+ ++I   C   RI EA  L   +   G +P++ TY  +INGLC
Sbjct: 225 FFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLC 284

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R G       +  EM            PD +TY+T+ +G CK G   +A  L  +M    
Sbjct: 285 RVGRIEETSGVLAEMDRKG------FAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNG 338

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PDVVTYTSLI   C A + N A   F +M  +G++PN VT+  ++N   + G MDEA 
Sbjct: 339 LPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAY 398

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R+ + MI+ G  P    YN L++G C++GR+  A  L   ME  G   DV SY  +I G+
Sbjct: 399 RIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGF 458

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C+ +E++ A  + +EM+ KG+ P  +TY++
Sbjct: 459 CRYQELDRAFQMNAEMVEKGVSPDAITYSS 488



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 173/353 (49%), Gaps = 24/353 (6%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + I+D M+R    PP + ++N L      +   +  + L + +   GL PD+ +Y+ +I 
Sbjct: 398 YRIWDEMIR-SGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIA 456

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FC+   +   F +   ++    +PDA+T++SLI+GLC + R+ EA  LF ++      P
Sbjct: 457 GFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLP 516

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D FTYT+LING C+ G    ALNL +EM       G +  PD +TY+ + +GL K+    
Sbjct: 517 DEFTYTSLINGYCKEGDLNEALNLHDEMIKK----GFL--PDTVTYNVLINGLNKQARTR 570

Query: 181 KAKELFLKM-KDENINPDVVTY---------------TSLIRGFCYANDWNEAKCLFIEM 224
           +AK L LK+  DE+I P+ +TY                +LI+GFC     NEA  +F  M
Sbjct: 571 EAKRLLLKLFYDESI-PNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESM 629

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + +  +PN   +NVI++  C++G + +A +L + M+  G  P       L+      G  
Sbjct: 630 IKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMD 689

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            +   +   +  +  + D      L+    K   I+   +L +EM   G  P+
Sbjct: 690 EQLNLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKDGFLPS 742


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 202/376 (53%), Gaps = 37/376 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLN------SIGLFPDLYTYN 56
           +FD +L +H  P  V + N L   +++ K   +      R N      S  + PD  TY+
Sbjct: 30  LFDELL-LHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPDCCTYS 88

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA-AALFTKLRA 115
           I+I CFC++GR+  GF   G IL++ +  D +    L+KGLC   R+ EA   L  ++  
Sbjct: 89  IVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPE 148

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG----------------NGEF--GV 157
            GC+  V +Y TL+ GLC       A  L   M +G                NG F  G 
Sbjct: 149 VGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQ 208

Query: 158 VCK-----------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           V K           PD +TY+TI DGLCK   VD+A+++F +M ++ + P+ VTY ++I 
Sbjct: 209 VDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIID 268

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C A + + A+ +F +M+D+GV+P+ VT+N I++ LCK   +D A  + + MI  GV+P
Sbjct: 269 GLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKP 328

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   YNT++DG C    +++A+ +F  M   G   D  +Y I+I+G CK + ++ A  ++
Sbjct: 329 DHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVF 388

Query: 327 SEMLSKGIRPTVVTYN 342
            +M+ KG++P   TYN
Sbjct: 389 QQMIDKGVKPNNGTYN 404



 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 183/328 (55%), Gaps = 12/328 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRL---NSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           V S+N L   L   +  +    L   +         PD+ +YNI+IN F   G+V   + 
Sbjct: 155 VVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYS 214

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +    L    +PD VT+ ++I GLC    +  A  +F ++   G KP+  TY T+I+GLC
Sbjct: 215 LF---LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLC 271

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +     +A  +F++M +     GV  KP  +TY+TI DGLCK   VD+A+ +F +M D  
Sbjct: 272 KAQEVDMAEGVFQKMVDK----GV--KPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRG 325

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTY ++I G C A   ++A+ +F +M+D+GV+P+ +T+ +I++ LCK   +D A 
Sbjct: 326 VKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAE 385

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + + MI  GV+P+   YN L+ G+  TG+     +    M ++    DVF+YG+L++  
Sbjct: 386 GVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYL 445

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           CKN +   A SL+  M+ KGI+P+V  Y
Sbjct: 446 CKNGKCNEARSLFDSMIRKGIKPSVTIY 473



 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 195/405 (48%), Gaps = 65/405 (16%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+     P  V ++N +   L K +  D    +F+++   G+ PD  TY I+I+  
Sbjct: 317 VFQQMIDRGVKPDHV-TYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGL 375

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK   V     V  +++     P+  T+  LI G  +  +  E      ++ A   +PDV
Sbjct: 376 CKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDV 435

Query: 123 FTYTTLINGLCRTGHTIVALNLFEE---------------MANGNGEFG----------- 156
           FTY  L++ LC+ G    A +LF+                M +G G+ G           
Sbjct: 436 FTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNL 495

Query: 157 ---------------VVC-----------------------KPDAITYSTITDGLCKEGF 178
                          V+C                        P+ +TY T+ D LCK G 
Sbjct: 496 MVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGR 555

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           VD A   F +M +E + P+ V + SL+ G C  + W + + LF+EM++QG++P++V FN 
Sbjct: 556 VDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNT 615

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++  LCK G++ EA RL++ M+ +G++PD   YNTL+DG C   R++ A +L   M S G
Sbjct: 616 VLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAG 675

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              ++ SY  L++GYCK   I+ A  L+ EML KG+ P V TYNT
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNT 720



 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 175/329 (53%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+NI+          D   SLF  +   G+ PD+ TYN +I+  CK   V     V
Sbjct: 191 PDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDV 247

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+ VT+ ++I GLC    +  A  +F K+   G KP   TY T+I+GLC+
Sbjct: 248 FQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCK 307

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F++M     + GV  KPD +TY+TI DGLCK   +DKA+ +F +M D+ +
Sbjct: 308 AQAVDRAEGVFQQMI----DRGV--KPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGV 361

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +TYT +I G C A   + A+ +F +M+D+GV+PN  T+N +++     G+ +E  +
Sbjct: 362 KPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQ 421

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            ++ M    + PD   Y  L+D  C  G+ N A+ LF SM   G    V  YGI+++GY 
Sbjct: 422 RIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYG 481

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +     L + M++ GI P    +NT
Sbjct: 482 KKGALSEMHDLLNLMVANGISPNHRIFNT 510



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 175/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K +  D    +F+++   G+ P+  TYN +I+  CK   V     V
Sbjct: 223 PDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGV 282

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P  VT+ ++I GLC    +  A  +F ++   G KPD  TY T+I+GLC+
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCK 342

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F++M +     GV  KPD +TY+ I DGLCK   VD+A+ +F +M D+ +
Sbjct: 343 AQAIDKAEGVFQQMIDK----GV--KPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGV 396

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY  LI G+     W E      EM    ++P+V T+ ++++ LCKNGK +EA  
Sbjct: 397 KPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARS 456

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + MI+ G++P  ++Y  ++ G+   G ++   +L   M +NG   +   +  +I  Y 
Sbjct: 457 LFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYA 516

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   I+  + ++ +M  +G+ P VVTY T
Sbjct: 517 KRAMIDEVMHIFIKMKQQGLSPNVVTYGT 545



 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 174/325 (53%), Gaps = 12/325 (3%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN +    AK    D V+ +F ++   GL P++ TY  LI+  CK+GRV    +   +++
Sbjct: 508 FNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMI 567

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
               TP+ V F SL+ GLC   +  +   LF ++   G +PD+  + T++  LC+ G  +
Sbjct: 568 NEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVM 627

Query: 140 VALNLFEEMANGNGEFGVVC---KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            A  L + M         VC   KPD I+Y+T+ DG C    +D+A +L   M    + P
Sbjct: 628 EARRLIDSM---------VCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKP 678

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           ++V+Y +L+ G+C A   + A CLF EM+ +GV P V T+N I+N L ++G+  EA  L 
Sbjct: 679 NIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELY 738

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             MI+         Y+ ++DGFC     + A ++F S+ S     D+ ++ I+I+G  K 
Sbjct: 739 VNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKG 798

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
              E A+ L++ + + G+ P+VVTY
Sbjct: 799 GRKEDAMDLFAAIPANGLVPSVVTY 823



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 186/364 (51%), Gaps = 29/364 (7%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +  H   P V ++ +L   L KN   +   SLF  +   G+ P +  Y I+++ + K G 
Sbjct: 426 MSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGA 485

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +S    +L  ++ +  +P+   F ++I      + I E   +F K++  G  P+V TY T
Sbjct: 486 LSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGT 545

Query: 128 LINGLCRTGHTIVALNLFEEMAN-----GNGEFGVVC----------------------- 159
           LI+ LC+ G    A+  F +M N      N  F  +                        
Sbjct: 546 LIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQG 605

Query: 160 -KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
            +PD + ++T+   LCKEG V +A+ L   M    + PDV++Y +LI G C+A+  +EA 
Sbjct: 606 IRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAV 665

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L   M+  G++PN+V++N +++  CK G++D A  L   M++ GV P    YNT+++G 
Sbjct: 666 KLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGL 725

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
             +GR + A+EL+V+M  +  +  + +Y I+++G+CKN   + A  ++  + S  ++  +
Sbjct: 726 FRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDI 785

Query: 339 VTYN 342
           +T+N
Sbjct: 786 ITFN 789



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 161/329 (48%), Gaps = 7/329 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ M+    +P  V   ++++G    +K ++ V  LF  + + G+ PD+  +N ++   C
Sbjct: 563 FNQMINEGVTPNNVVFNSLVYGLCTVDK-WEKVEELFLEMLNQGIRPDIVFFNTVLCNLC 621

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K GRV     ++  ++     PD +++ +LI G C  SR+ EA  L   + + G KP++ 
Sbjct: 622 KEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIV 681

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TL++G C+ G    A  LF EM       GV   P   TY+TI +GL + G   +A+
Sbjct: 682 SYNTLLHGYCKAGRIDNAYCLFREMLRK----GVT--PGVETYNTILNGLFRSGRFSEAR 735

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL++ M        + TY+ ++ GFC  N ++EA  +F  +    +Q +++TFN++++ L
Sbjct: 736 ELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGL 795

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G+ ++A  L   +   G+ P    Y  + +     G +     LF  ME +G   + 
Sbjct: 796 FKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNS 855

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSK 332
                LI       EI  A +  S++  K
Sbjct: 856 HMLNALIRKLLDRGEIPRAGAYLSKLDEK 884



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 143/311 (45%), Gaps = 6/311 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  FN +   L K         L   +  +GL PD+ +YN LI+  C   R+     +
Sbjct: 608 PDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKL 667

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   P+ V++ +L+ G C   RI  A  LF ++   G  P V TY T++NGL R
Sbjct: 668 LDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFR 727

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  L+  M      + +       TYS I DG CK    D+A ++F  +   ++
Sbjct: 728 SGRFSEARELYVNMIKSRKLWSIC------TYSIILDGFCKNNCFDEAFKIFQSLCSMDL 781

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D++T+  +I G        +A  LF  +   G+ P+VVT+ +I   L + G ++E   
Sbjct: 782 QLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDC 841

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L  +M + G  P++ + N L+      G + RA      ++      +  +  +LI+ + 
Sbjct: 842 LFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFS 901

Query: 315 KNKEIEGALSL 325
           + +  + A SL
Sbjct: 902 REEYQQHAKSL 912


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 165/261 (63%), Gaps = 6/261 (2%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
             P  VTF +L+ GLC++++IM+A  LF ++   G +PDV TY+T+INGLC+ G+T +AL
Sbjct: 6   LQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMAL 65

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            L ++M          CKP+ + Y+TI D LCK+  V +A + F +M  E I PDV TY+
Sbjct: 66  QLLKKMEEKG------CKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           S++ GFC     NEA  LF +M+++ V PN VTF ++++ LCK   + EA  + E M + 
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK 179

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G+ PD   YN L+DG+C   +++ A++LF  M+  GC  +V SY ILING+CK+  I+ A
Sbjct: 180 GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEA 239

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
             L +EM  K + P + TY+T
Sbjct: 240 KGLLAEMSHKSLTPDIFTYST 260



 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 182/328 (55%), Gaps = 8/328 (2%)

Query: 15  PPVCSFNILF-GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P + +FN L  G  +K K  D V  LF  +  +G  PD+ TY+ +IN  CKMG  +    
Sbjct: 8   PTLVTFNTLLSGLCSKAKIMDAV-KLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQ 66

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L ++      P+ V + ++I  LC +  + EA   F+++   G  PDVFTY+++++G C
Sbjct: 67  LLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFC 126

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A +LF++M   N        P+ +T++ + DGLCK+  + +A  +F  M ++ 
Sbjct: 127 NLGRVNEATSLFKQMVERN------VIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PDV TY +L+ G+C  +  +EA+ LF  M  +G  PNV ++N+++N  CK+G++DEA 
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAK 240

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL  M    + PD   Y+TLM GFC  GR   A+EL   M S G + ++ +Y I+++G 
Sbjct: 241 GLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGL 300

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           CK+  ++ A  L   M    I P +  Y
Sbjct: 301 CKHGHLDEAFELLKAMQESKIEPNIFIY 328



 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 180/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K++     +  F  +   G+ PD++TY+ +++ FC +GRV+    +
Sbjct: 78  PNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSL 137

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+ VTFT LI GLC +  I EA  +F  +   G +PDV+TY  L++G C 
Sbjct: 138 FKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCS 197

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF  M          C P+  +Y+ + +G CK G +D+AK L  +M  +++
Sbjct: 198 RSQMDEAQKLFNIMDRKG------CAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSL 251

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ TY++L+RGFC      EA+ L  EM   G+ PN++T++++++ LCK+G +DEA  
Sbjct: 252 TPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFE 311

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M +  + P+  +Y  L++G C  G++  A+ELF ++   G    V +Y ++I+G  
Sbjct: 312 LLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLL 371

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K      A  L+ EM   G  P   TYN
Sbjct: 372 KGGLSNEACELFREMAVNGCLPNSCTYN 399



 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 160/297 (53%), Gaps = 6/297 (2%)

Query: 46  IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME 105
           +GL P L T+N L++  C   ++     +   +++    PD +T++++I GLC       
Sbjct: 4   LGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTM 63

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           A  L  K+   GCKP+V  Y T+I+ LC+      A++ F EM            PD  T
Sbjct: 64  ALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEG------IPPDVFT 117

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           YS+I  G C  G V++A  LF +M + N+ P+ VT+T LI G C     +EA  +F  M 
Sbjct: 118 YSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMT 177

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++G++P+V T+N +++  C   +MDEA +L  +M + G  P+   YN L++G C +GR++
Sbjct: 178 EKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRID 237

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            AK L   M       D+F+Y  L+ G+C+    + A  L  EM S G+ P ++TY+
Sbjct: 238 EAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYS 294



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 165/328 (50%), Gaps = 6/328 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +++ +          +   SLFK++    + P+  T+ ILI+  CK   +S  ++
Sbjct: 112 PPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWL 171

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   +      PD  T+ +L+ G C+ S++ EA  LF  +   GC P+V +Y  LING C
Sbjct: 172 VFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHC 231

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           ++G    A  L  EM++ +        PD  TYST+  G C+ G   +A+EL  +M    
Sbjct: 232 KSGRIDEAKGLLAEMSHKS------LTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYG 285

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+++TY+ ++ G C     +EA  L   M +  ++PN+  + +++  +C  GK++ A 
Sbjct: 286 LLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAAR 345

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   +   G++P    Y  ++ G    G  N A ELF  M  NGC+ +  +Y ++I G+
Sbjct: 346 ELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGF 405

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +N +   A+ L  EM+ KG      T+
Sbjct: 406 LRNGDTPNAVRLIEEMVGKGFSADSSTF 433



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 154/307 (50%), Gaps = 7/307 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+  +  P  V +F IL   L K +       +F+ +   GL PD+YTYN L++ +
Sbjct: 137 LFKQMVERNVIPNKV-TFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGY 195

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   ++     +   + R    P+  ++  LI G C   RI EA  L  ++      PD+
Sbjct: 196 CSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDI 255

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FTY+TL+ G C+ G    A  L +EM +    +G++  P+ ITYS + DGLCK G +D+A
Sbjct: 256 FTYSTLMRGFCQVGRPQEAQELLKEMCS----YGLL--PNLITYSIVLDGLCKHGHLDEA 309

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL   M++  I P++  YT LI G C       A+ LF  +  +G+QP VVT+ V+++ 
Sbjct: 310 FELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISG 369

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L K G  +EA  L   M   G  P++  YN ++ GF   G    A  L   M   G   D
Sbjct: 370 LLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSAD 429

Query: 303 VFSYGIL 309
             ++ +L
Sbjct: 430 SSTFRML 436



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 133/262 (50%), Gaps = 6/262 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L          D    LF  ++  G  P++ +YNILIN  CK GR+     +
Sbjct: 183 PDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGL 242

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +     TPD  T+++L++G C   R  EA  L  ++ ++G  P++ TY+ +++GLC+
Sbjct: 243 LAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCK 302

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            GH   A  L + M     E      P+   Y+ + +G+C  G ++ A+ELF  +  + I
Sbjct: 303 HGHLDEAFELLKAMQESKIE------PNIFIYTILIEGMCTFGKLEAARELFSNLFVKGI 356

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VVTYT +I G       NEA  LF EM   G  PN  T+NVI+    +NG    A R
Sbjct: 357 QPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVR 416

Query: 255 LLELMIQIGVRPDASVYNTLMD 276
           L+E M+  G   D+S +  L D
Sbjct: 417 LIEEMVGKGFSADSSTFRMLSD 438



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 106/189 (56%)

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
           F +  +P  +T++T+  GLC +  +  A +LF +M      PDV+TY+++I G C   + 
Sbjct: 2   FKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNT 61

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             A  L  +M ++G +PNVV +N I++ LCK+  + EA      M++ G+ PD   Y+++
Sbjct: 62  TMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSI 121

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + GFC  GRVN A  LF  M     + +  ++ ILI+G CK + I  A  ++  M  KG+
Sbjct: 122 LHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGL 181

Query: 335 RPTVVTYNT 343
            P V TYN 
Sbjct: 182 EPDVYTYNA 190



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 73/120 (60%)

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M   G+QP +VTFN +++ LC   K+ +A +L + M+++G  PD   Y+T+++G C  G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              A +L   ME  GC  +V +Y  +I+  CK++ +  A+  +SEM+ +GI P V TY++
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/351 (36%), Positives = 190/351 (54%), Gaps = 15/351 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAK-------NKHYDTVLSLFKRLN---SIGLFPDL 52
           +FD +L  H  P  + +FN L   +++           + V+SLF R+    +I + PDL
Sbjct: 36  LFDGLL-THARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVTPDL 94

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
            TY+ILI CFC+MGR+  GF   G IL+S +  + +    L+KGLC   R+ EA  +  K
Sbjct: 95  CTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIK 154

Query: 113 -LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
            +   GC PDV +Y TL+ G C       AL L   MA+  G     C P+ ++Y+T+ +
Sbjct: 155 RMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGR---SCPPNVVSYATVIN 211

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           G   EG VDKA  LFL+M D  I P+VVTYT++I G C A   + A+ +F +M+D+GV+P
Sbjct: 212 GFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKP 271

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           +  T+N +++     GK  E  R+LE M   G++PD   Y +L++  C  GR   A+  F
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFF 331

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            SM   G   +V  YGILI+GY     +     L + M+  G+ P    +N
Sbjct: 332 DSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFN 382



 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 172/341 (50%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+     P       ++ G L+  K +  V+ + + +++ GL PD YTY  L+N  
Sbjct: 260 VFQQMIDKGVKPDNDTYNCLIHGYLSIGK-WKEVVRMLEEMSAHGLKPDCYTYGSLLNYL 318

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GR          ++R    P+   +  LI G   +  + E   L   +   G  PD 
Sbjct: 319 CNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDH 378

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             +  +     +      A+++F +M            PD + +  + D LCK G VD A
Sbjct: 379 HIFNIIFTAYAKKAMIDEAMHIFNKMKQQG------LSPDVVNFGALIDALCKLGRVDDA 432

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
              F +M +E + P++  + SL+ G C  + W +AK  + EM++QG++P+VV FN I+  
Sbjct: 433 VLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCN 492

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC  G++ +A RL++LM ++G RPD   Y TL+ G CL GR++ A +    M S G   D
Sbjct: 493 LCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPD 552

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++Y  L++GYC+   I+ A  ++ EML  GI P VVTY+T
Sbjct: 553 EWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYST 593



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 170/339 (50%), Gaps = 7/339 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M+R     P V  + IL    A       +  L   +   GL PD + +NI+   + 
Sbjct: 331 FDSMIR-KGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYA 389

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K   +     +  ++ +   +PD V F +LI  LC   R+ +A   F ++   G  P++F
Sbjct: 390 KKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIF 449

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            + +L+ GLC       A   + EM N         +PD + ++TI   LC +G V KA+
Sbjct: 450 VFNSLVYGLCTVDKWEKAKEFYFEMLNQG------IRPDVVFFNTILCNLCTKGQVMKAQ 503

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L   M+     PDV++YT+LI G C     +EA      M+  G++P+  T+N +++  
Sbjct: 504 RLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGY 563

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C+ G++D+A  +   M++ G+ P    Y+T++ G   T R + AKEL+++M ++G   ++
Sbjct: 564 CRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNI 623

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + Y I++NG  KN  ++ A  L+  + SK  +  + T+N
Sbjct: 624 WIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFN 662



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 164/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    FNI+F   AK    D  + +F ++   GL PD+  +  LI+  CK+GRV    + 
Sbjct: 376 PDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLK 435

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+   F SL+ GLC   +  +A   + ++   G +PDV  + T++  LC 
Sbjct: 436 FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCT 495

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  L + M        V  +PD I+Y+T+  G C  G +D+A +    M    +
Sbjct: 496 KGQVMKAQRLIDLMER------VGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGL 549

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY +L+ G+C A   ++A  +F EM+  G+ P VVT++ I++ L    +  EA  
Sbjct: 550 KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKE 609

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   MI  G + +  +YN +++G      V+ A +LF S+ S     ++ ++ I+I    
Sbjct: 610 LYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALF 669

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K+   E A+ L++ + S G+ P V TY
Sbjct: 670 KSGRNEDAMHLFATISSYGLVPDVFTY 696



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 164/332 (49%), Gaps = 6/332 (1%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   ++  L   L  N         F  +   G+ P++  Y ILI+ +   G +S 
Sbjct: 302 HGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSE 361

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L  ++ +  +PD   F  +      ++ I EA  +F K++  G  PDV  +  LI+
Sbjct: 362 MHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALID 421

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
            LC+ G    A+  F +M N     GV   P+   ++++  GLC     +KAKE + +M 
Sbjct: 422 ALCKLGRVDDAVLKFNQMMNE----GVA--PNIFVFNSLVYGLCTVDKWEKAKEFYFEML 475

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           ++ I PDVV + +++   C      +A+ L   M   G +P+V+++  ++   C  G++D
Sbjct: 476 NQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRID 535

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA++ L++M+ +G++PD   YNTL+ G+C  GR++ A  +F  M  NG    V +Y  ++
Sbjct: 536 EAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTIL 595

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +G    +    A  LY  M++ G +  +  YN
Sbjct: 596 HGLFTTRRFSEAKELYLNMITSGKQWNIWIYN 627



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 18/232 (7%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP----DAITYSTITDGLCK 175
           PD+ TY+ LI   CR G           + +G   FG++ K     + I  + +  GLC 
Sbjct: 92  PDLCTYSILIGCFCRMG----------RLEHGFATFGLILKSGWRVNNIVINQLLKGLCD 141

Query: 176 EGFVDKAKELFLK-MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD-QGVQ--P 231
              + +A ++ +K M +    PDVV+Y +L++GFC      EA  L   M D QG    P
Sbjct: 142 AKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPP 201

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           NVV++  ++N     G++D+A  L   M+  G++P+   Y T++DG C    V+RA+ +F
Sbjct: 202 NVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVF 261

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M   G   D  +Y  LI+GY    + +  + +  EM + G++P   TY +
Sbjct: 262 QQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGS 313



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 135/311 (43%), Gaps = 6/311 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  FN +   L           L   +  +G  PD+ +Y  LI   C +GR+      
Sbjct: 481 PDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKS 540

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD  T+ +L+ G C   RI +A  +F ++   G  P V TY+T+++GL  
Sbjct: 541 LDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFT 600

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A  L+  M     ++ +        Y+ I +GL K   VD+A +LF  +  ++ 
Sbjct: 601 TRRFSEAKELYLNMITSGKQWNI------WIYNIILNGLSKNNCVDEAFKLFQSLCSKDF 654

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++ T+  +I     +    +A  LF  +   G+ P+V T+ +I   L + G ++E   
Sbjct: 655 QLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDD 714

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M + G  P++ + N L+      G + RA      ++      +  +  +LI+   
Sbjct: 715 LFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLISLLS 774

Query: 315 KNKEIEGALSL 325
           +++    A SL
Sbjct: 775 RDEYHHHATSL 785



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 124/286 (43%), Gaps = 34/286 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R+  + P V S+  L G        D        + S+GL PD +TYN L++ +
Sbjct: 505 LIDLMERV-GTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGY 563

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR+   + V   +LR+  TP  VT+++++ GL    R  EA  L+  +   G + ++
Sbjct: 564 CRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNI 623

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM--------------------ANGNGE-------- 154
           + Y  ++NGL +      A  LF+ +                     +G  E        
Sbjct: 624 WIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFAT 683

Query: 155 ---FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
              +G+V  PD  TY  I + L +EG++++  +LF  M+     P+     +L+R   + 
Sbjct: 684 ISSYGLV--PDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHR 741

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            D   A     ++ ++       T  ++++ L ++     A+ L E
Sbjct: 742 GDITRAGAYLSKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPE 787



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + +FNI+ G L K+   +  + LF  ++S GL PD++TY ++     + G +     +  
Sbjct: 658 ITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFS 717

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + +S  TP++    +L++ L     I  A A  +KL       +  T   LI+ L R  
Sbjct: 718 AMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLISLLSRDE 777

Query: 137 HTIVALNLFEE 147
           +   A +L E+
Sbjct: 778 YHHHATSLPEK 788


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 117/328 (35%), Positives = 183/328 (55%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N     L +N H    L +   +   G  PD++TYNI++NC CK G++     +
Sbjct: 288 PDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 347

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++     PD  TF +LI  LC+ +R+ EA  L  ++   G  PDV+T+  LIN LC+
Sbjct: 348 LNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCK 407

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +AL LFEEM +        C PD +TY+T+ D LC  G + KA +L  +M+    
Sbjct: 408 VGDPQLALRLFEEMKSSG------CTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGC 461

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               VTY ++I G C      EA+ +F +M  QG+  N +TFN +++ LCK+ ++D+A++
Sbjct: 462 PRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQ 521

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  MI  G++P+   YN+++  +C  G + +A ++  +M +NG   DV +YG LING C
Sbjct: 522 LISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLC 581

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    + AL L   M  KG+R T   YN
Sbjct: 582 KAGRTQVALKLLRGMRIKGMRATPKAYN 609



 Score =  203 bits (517), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L   L +     T + + + ++S G+ PD  T+  L+  F + G +     V
Sbjct: 183 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRV 242

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+L    +P  VT   LI G C   R+ +A     +  A G +PD  TY T +NGLC+
Sbjct: 243 KARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQ 302

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            GH   AL + + M     +      PD  TY+ + + LCK G +++AK +  +M +   
Sbjct: 303 NGHVGHALKVMDVMVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGC 356

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ T+ +LI   C  N   EA  L  ++  +G+ P+V TFN+++N LCK G    A R
Sbjct: 357 LPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALR 416

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M   G  PD   YNTL+D  C  G++ +A +L   MES GC R   +Y  +I+G C
Sbjct: 417 LFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLC 476

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   IE A  ++ +M  +GI    +T+NT
Sbjct: 477 KKMRIEEAEEVFDQMDLQGISRNAITFNT 505



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 163/328 (49%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L   L      +  L L +++   GL PD+YT+NILIN  CK+G       +
Sbjct: 358 PDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRL 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S  TPD VT+ +LI  LC+  ++ +A  L  ++ + GC     TY T+I+GLC+
Sbjct: 418 FEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCK 477

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F++M     +   + + +AIT++T+ DGLCK+  +D A +L  +M  E +
Sbjct: 478 KMRIEEAEEVFDQM-----DLQGISR-NAITFNTLIDGLCKDKRIDDANQLISQMISEGL 531

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +TY S++  +C   D  +A  +   M   G + +VVT+  ++N LCK G+   A +
Sbjct: 532 QPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALK 591

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M   G+R     YN ++           A  LF  M   G   D F+Y I+  G C
Sbjct: 592 LLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLC 651

Query: 315 K-NKEIEGALSLYSEMLSKGIRPTVVTY 341
           +    I  A     EM+ KG  P   ++
Sbjct: 652 RGGGSIREAFDFLLEMVDKGFIPEFSSF 679



 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 159/337 (47%), Gaps = 7/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ML M  SP  V + N+L     K    +  L   ++  + G  PD  TYN  +N  C+ G
Sbjct: 246 MLEMGCSPTKV-TVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNG 304

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V     V+  +++    PD  T+  ++  LC   ++ EA  +  ++   GC PD+ T+ 
Sbjct: 305 HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFN 364

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLI  LC       AL+L  ++            PD  T++ + + LCK G    A  LF
Sbjct: 365 TLIVALCSGNRLEEALDLARQVTLKG------LSPDVYTFNILINALCKVGDPQLALRLF 418

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +MK     PD VTY +LI   C      +A  L  EM   G   + VT+N I++ LCK 
Sbjct: 419 EEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKK 478

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            +++EA  + + M   G+  +A  +NTL+DG C   R++ A +L   M S G   +  +Y
Sbjct: 479 MRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITY 538

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++  YCK  +I+ A  +   M + G    VVTY T
Sbjct: 539 NSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGT 575



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 138/287 (48%), Gaps = 29/287 (10%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D V +  L+  L   S++     +++++   G KPDV T+ TL+  LCR      A+ + 
Sbjct: 149 DTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLML 208

Query: 146 EEMAN---------------GNGEFGVV--------------CKPDAITYSTITDGLCKE 176
           EEM++               G  E G +              C P  +T + + +G CK 
Sbjct: 209 EEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKL 268

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G V+ A     +       PD +TY + + G C       A  +   M+ +G  P+V T+
Sbjct: 269 GRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTY 328

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N+++N LCKNG+++EA  +L  M++ G  PD + +NTL+   C   R+  A +L   +  
Sbjct: 329 NIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTL 388

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G   DV+++ ILIN  CK  + + AL L+ EM S G  P  VTYNT
Sbjct: 389 KGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNT 435



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           FG + D   Y  L+N L       +   ++ EM    GE G+  KPD +T++T+   LC+
Sbjct: 144 FGIQADTVVYNHLLNVLVEGSKMKLLETVYSEM----GERGI--KPDVVTFNTLMKALCR 197

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
              V  A  +  +M    + PD  T+T+L++GF        A  +   M++ G  P  VT
Sbjct: 198 AHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVT 257

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            NV++N  CK G++++A   ++  I  G  PD   YNT ++G C  G V  A ++   M 
Sbjct: 258 VNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMV 317

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   DVF+Y I++N  CKN ++E A  + ++M+ +G  P + T+NT
Sbjct: 318 QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNT 365



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 119/258 (46%), Gaps = 7/258 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P    ++N +   L K    +    +F +++  G+  +  T+N LI+  CK  R+     
Sbjct: 462 PRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQ 521

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++ +++     P+ +T+ S++   C +  I +AA +   + A G + DV TY TLINGLC
Sbjct: 522 LISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLC 581

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T VAL L   M       G+   P A  Y+ +   L +      A  LF +M +  
Sbjct: 582 KAGRTQVALKLLRGMRIK----GMRATPKA--YNPVIQSLFRRNNTRDAMNLFREMTEVG 635

Query: 194 INPDVVTYTSLIRGFCY-ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
             PD  TY  + RG C       EA    +EM+D+G  P   +F ++   L   G  D  
Sbjct: 636 EPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYF 695

Query: 253 SRLLELMIQIGVRPDASV 270
            R +E++I+     D+ V
Sbjct: 696 IRAIEIIIEKADLGDSDV 713


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 193/342 (56%), Gaps = 9/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M R     P + SF+ L G LA+N H    L  F+ +   G+ PD   Y ILI+ F
Sbjct: 384 IFDEMSR-RGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGF 442

Query: 63  CKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           C+ G +S    +   +L R CF  D VT+ + + GLC +    +A  LF ++   G  PD
Sbjct: 443 CRNGALSDALKMRDEMLARGCFM-DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +T+TTLI G C+ G+   ALNLFE M   N       KPD +TY+T+ DG CK G + +
Sbjct: 502 FYTFTTLIRGYCKDGNMDKALNLFEAMVRTN------LKPDKVTYNTLIDGFCKAGEMGR 555

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AKEL+  M  ++I PD ++Y +++ GFC +    EA  L  +M+++G++PN+VT N ++ 
Sbjct: 556 AKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIK 615

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             C++G M +A   L  MI  G+ PD+  YNTL+DG+     + +A  L   ME  G   
Sbjct: 616 GYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQF 675

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ +Y +++NG+C   +++ A  +  +M+  GI P   TY++
Sbjct: 676 NIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSS 717



 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 182/331 (54%), Gaps = 14/331 (4%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++N L     +    +    L    +S G+ P L TYN ++   CK+G+      VL 
Sbjct: 292 IVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLI 351

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L+   TP+A T+ +L+  +C    I+EA  +F ++   G  PD+ ++++LI  L R G
Sbjct: 352 EMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNG 411

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           H   AL  F EM       G+V  PD + Y+ + DG C+ G +  A    LKM+DE +  
Sbjct: 412 HLYQALMHFREMERS----GIV--PDNVIYTILIDGFCRNGALSDA----LKMRDEMLAR 461

Query: 197 ----DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
               DVVTY + + G C    + +A  LF EM+++G+ P+  TF  ++   CK+G MD+A
Sbjct: 462 GCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKA 521

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L E M++  ++PD   YNTL+DGFC  G + RAKEL+  M     + D  SYG ++NG
Sbjct: 522 LNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNG 581

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +C +  +  AL+L  +ML KGIRP +VT NT
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNT 612



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 178/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   + +  +      +F  ++  G+ PDL +++ LI    + G +    + 
Sbjct: 360 PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMH 419

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + RS   PD V +T LI G C    + +A  +  ++ A GC  DV TY T +NGLC+
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF EM     E G+V  PD  T++T+  G CK+G +DKA  LF  M   N+
Sbjct: 480 KKMFADADMLFNEMV----ERGMV--PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY +LI GFC A +   AK L+ +M+ + + P+ +++  ++N  C +G + EA  
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M++ G+RP+    NTL+ G+C +G + +A E    M SNG + D FSY  LI+GY 
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYL 653

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +E A  L +EM  +G++  ++TYN
Sbjct: 654 KEANLEKAFILINEMEKRGLQFNIITYN 681



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 150/316 (47%), Gaps = 33/316 (10%)

Query: 61  CFCKMGRVS--PGFVVLGRILRSCFTPDAV--TFTSLIKGLCAESRIMEAAALFTKLRAF 116
           C  +M R S      V+  ++ +CF   +V   +  L++      ++ E +  F  LR  
Sbjct: 157 CILRMVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRK 216

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV---------VCK------- 160
           G    +     L+ GL RTG   +A  ++ E+  G  E  V         +CK       
Sbjct: 217 GVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENV 276

Query: 161 -------------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
                         D +TY+T+ +  C+EG V++A +L        + P ++TY +++ G
Sbjct: 277 MFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYG 336

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    ++ AK + IEM+  G+ PN  T+N ++ E+C+   + EA  + + M + GV PD
Sbjct: 337 LCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPD 396

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              +++L+      G + +A   F  ME +G + D   Y ILI+G+C+N  +  AL +  
Sbjct: 397 LVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD 456

Query: 328 EMLSKGIRPTVVTYNT 343
           EML++G    VVTYNT
Sbjct: 457 EMLARGCFMDVVTYNT 472



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   FDYMLRMHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           ++Y+ +M  +   P   S+N L     K  + +    L   +   GL  ++ TYN+++N 
Sbjct: 627 YEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNG 686

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FC  G++     VL +++     PD  T++SLI G  ++  + EA     ++   G  PD
Sbjct: 687 FCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 193/342 (56%), Gaps = 9/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M R     P + SF+ L G LA+N H    L  F+ +   G+ PD   Y ILI+ F
Sbjct: 384 IFDEMSR-RGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGF 442

Query: 63  CKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           C+ G +S    +   +L R CF  D VT+ + + GLC +    +A  LF ++   G  PD
Sbjct: 443 CRNGALSDALKMRDEMLARGCFM-DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +T+TTLI G C+ G+   ALNLFE M   N       KPD +TY+T+ DG CK G + +
Sbjct: 502 FYTFTTLIRGYCKDGNMDKALNLFEAMVRTN------LKPDKVTYNTLIDGFCKAGEMGR 555

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AKEL+  M  ++I PD ++Y +++ GFC +    EA  L  +M+++G++PN+VT N ++ 
Sbjct: 556 AKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIK 615

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             C++G M +A   L  MI  G+ PD+  YNTL+DG+     + +A  L   ME  G   
Sbjct: 616 GYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQF 675

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ +Y +++NG+C   +++ A  +  +M+  GI P   TY++
Sbjct: 676 NIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSS 717



 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 182/331 (54%), Gaps = 14/331 (4%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++N L     +    +    L    +S G+ P L TYN ++   CK+G+      VL 
Sbjct: 292 IVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLI 351

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L+   TP+A T+ +L+  +C    I+EA  +F ++   G  PD+ ++++LI  L R G
Sbjct: 352 EMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNG 411

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           H   AL  F EM       G+V  PD + Y+ + DG C+ G +  A    LKM+DE +  
Sbjct: 412 HLYQALMHFREMERS----GIV--PDNVIYTILIDGFCRNGALSDA----LKMRDEMLAR 461

Query: 197 ----DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
               DVVTY + + G C    + +A  LF EM+++G+ P+  TF  ++   CK+G MD+A
Sbjct: 462 GCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKA 521

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L E M++  ++PD   YNTL+DGFC  G + RAKEL+  M     + D  SYG ++NG
Sbjct: 522 LNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNG 581

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +C +  +  AL+L  +ML KGIRP +VT NT
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNT 612



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 178/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   + +  +      +F  ++  G+ PDL +++ LI    + G +    + 
Sbjct: 360 PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMH 419

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + RS   PD V +T LI G C    + +A  +  ++ A GC  DV TY T +NGLC+
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF EM     E G+V  PD  T++T+  G CK+G +DKA  LF  M   N+
Sbjct: 480 KKMFADADMLFNEMV----ERGMV--PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY +LI GFC A +   AK L+ +M+ + + P+ +++  ++N  C +G + EA  
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M++ G+RP+    NTL+ G+C +G + +A E    M SNG + D FSY  LI+GY 
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYL 653

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +E A  L +EM  +G++  ++TYN
Sbjct: 654 KEANLEKAFILINEMEKRGLQFNIITYN 681



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 150/316 (47%), Gaps = 33/316 (10%)

Query: 61  CFCKMGRVS--PGFVVLGRILRSCFTPDAV--TFTSLIKGLCAESRIMEAAALFTKLRAF 116
           C  +M R S      V+  ++ +CF   +V   +  L++      ++ E +  F  LR  
Sbjct: 157 CILRMVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRK 216

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV---------VCK------- 160
           G    +     L+ GL RTG   +A  ++ E+  G  E  V         +CK       
Sbjct: 217 GVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENV 276

Query: 161 -------------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
                         D +TY+T+ +  C+EG V++A +L        + P ++TY +++ G
Sbjct: 277 MFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYG 336

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    ++ AK + IEM+  G+ PN  T+N ++ E+C+   + EA  + + M + GV PD
Sbjct: 337 LCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPD 396

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              +++L+      G + +A   F  ME +G + D   Y ILI+G+C+N  +  AL +  
Sbjct: 397 LVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD 456

Query: 328 EMLSKGIRPTVVTYNT 343
           EML++G    VVTYNT
Sbjct: 457 EMLARGCFMDVVTYNT 472



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 4   FDYMLRMHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           ++Y+ +M  +   P   S+N L     K  + +    L   +   GL  ++ TYN+++N 
Sbjct: 627 YEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNG 686

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FC  G++     VL +++     PD  T++SLI G  ++  + EA     ++   G  PD
Sbjct: 687 FCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/352 (36%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 7   MLRMHPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           ML  H +P P +  F  + G L K  HY  V+SL +++   GL  +L T +ILINC+ ++
Sbjct: 1   MLLHHKNPTPSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQL 60

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G+ +  F V   IL+  +  DA+TFT+LIKGLC +  I +A     K+ A G K +  +Y
Sbjct: 61  GQNALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSY 120

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            TLINGLC+ G T  AL     +       G + +PD + Y+TI DGLCK+  V+ A  L
Sbjct: 121 GTLINGLCKVGQTRAALEFLRRID------GKLVQPDVVMYNTIIDGLCKDKLVNDAFNL 174

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           + +M  + I P VVTY +LI G C      +A  L  +M+ + + P V TF+++++  CK
Sbjct: 175 YFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCK 234

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE--------------LF 291
            GKM EA  +  +M++  V+P+   YN+LMDG  L   V +AK               LF
Sbjct: 235 EGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLF 294

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M       D+  Y  LI+G CK+     AL    EM  +G  P + TYN+
Sbjct: 295 EEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNS 346



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 165/332 (49%), Gaps = 20/332 (6%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K       L   +R++   + PD+  YN +I+  CK   V+  F +   +
Sbjct: 119 SYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEM 178

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P  VT+ +LI GLC  +++ +A  L  K+      P V+T++ LI+  C+ G  
Sbjct: 179 VAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKM 238

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF---LKMKDENIN 195
             A N+F  M   +       KP+ +TY+++ DG      V KAK +F   +KM DE +N
Sbjct: 239 KEAKNVFAVMMKED------VKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMN 292

Query: 196 -----------PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
                      PD+V Y SLI G C +     A     EM  +G  P++ T+N +++ LC
Sbjct: 293 LFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALC 352

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           KN  +D+A  LL  +   G++P    YN L++G C +GR+  A+++F  +   G   DV+
Sbjct: 353 KNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVY 412

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           +Y  +I G+CK    +  L++ S+M   G  P
Sbjct: 413 TYNAMIKGFCKKGLFDETLAMVSKMKDSGCSP 444



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 164/333 (49%), Gaps = 21/333 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L K+K  +   +L+  + +  + P + TYN LI   C M ++     +
Sbjct: 150 PDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGL 209

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING--- 131
           L +++     P   TF+ LI   C E ++ EA  +F  +     KP++ TY +L++G   
Sbjct: 210 LHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHL 269

Query: 132 --LCRTGHTIV---------ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
             + +   +I          A+NLFEEM      F  +  PD + Y+++ DGLCK G   
Sbjct: 270 VNVVKKAKSIFNTMIKMVDEAMNLFEEM-----HFKQIY-PDMVIYNSLIDGLCKSGRTP 323

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A +   +M      PD+ TY SL+   C     ++A  L  ++ DQG+QP+V T+N+++
Sbjct: 324 YALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILI 383

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N LCK+G++ +A ++ E ++  G   D   YN ++ GFC  G  +    +   M+ +GC 
Sbjct: 384 NGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCS 443

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
            D  +  I+I       E + A   + EM+ +G
Sbjct: 444 PDAKNCEIIIRSLFDKGENDKA-GKFREMIVRG 475



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 20/302 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L         + L  ++    + P +YT++ILI+ FCK G++     V
Sbjct: 185 PSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNV 244

Query: 75  LGRILRSCFTPDAVTFTSLIKG-----LCAESR---------IMEAAALFTKLRAFGCKP 120
              +++    P+ VT+ SL+ G     +  +++         + EA  LF ++      P
Sbjct: 245 FAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYP 304

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+  Y +LI+GLC++G T  AL    EM +  G+      PD  TY+++ D LCK   VD
Sbjct: 305 DMVIYNSLIDGLCKSGRTPYALKFIGEM-HYRGQ-----PPDIFTYNSLLDALCKNYHVD 358

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA EL  K+KD+ I P V TY  LI G C +    +A+ +F +++ +G   +V T+N ++
Sbjct: 359 KAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMI 418

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
              CK G  DE   ++  M   G  PDA     ++      G  ++A +    +    C 
Sbjct: 419 KGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDKGENDKAGKFREMIVRGKCH 478

Query: 301 RD 302
           R+
Sbjct: 479 RE 480



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 65/139 (46%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
            PP + ++N L   L KN H D  + L  +L   G+ P + TYNILIN  CK GR+    
Sbjct: 337 QPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAE 396

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V   +L   +  D  T+ ++IKG C +    E  A+ +K++  GC PD      +I  L
Sbjct: 397 KVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSL 456

Query: 133 CRTGHTIVALNLFEEMANG 151
              G    A    E +  G
Sbjct: 457 FDKGENDKAGKFREMIVRG 475


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 184/341 (53%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F +M+     P       ++ G L+  K +  V+ + + +++ GL PD   Y +L++  
Sbjct: 224 VFQHMIDKGVRPNNHTYTCLIHGYLSTGK-WKEVVQMLQEMSTHGLQPDCVIYAVLLDYL 282

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR +    +   ++R    P    +  L+ G   E  + E  +    +   G  PD 
Sbjct: 283 CKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDH 342

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             +  + N   +      A+++F++M            P  + Y  + D LCK G VD A
Sbjct: 343 HIFNIMFNAYAKKAMIDEAMHIFDKMRQQ------WLSPGVVNYGALIDALCKLGRVDDA 396

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
              F +M +E + PD+  ++SL+ G C  + W +A+ LF E++DQG++ N   FN++M  
Sbjct: 397 VLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCN 456

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+ G++ EA RL++LM+++ VRPD   YNTL+DG CLTGR++ A +L   M S G   D
Sbjct: 457 LCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPD 516

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            F+Y  L++GYCK + I+ A SL+ EML KG+ P VVTYNT
Sbjct: 517 EFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNT 557



 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 187/348 (53%), Gaps = 14/348 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNK---HYDTVLSLFKRLN---SIGLFPDLYTYN 56
           +FD ML  +  P  V +FN L   +++ +     + V+SLF R+    S+ + P   TY 
Sbjct: 38  LFDEML-TYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRMIRECSVKVAPSSCTYT 96

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCFT-PDAVTFTSLIKGLCAESRIMEAA-ALFTKLR 114
           ILI CFC+MGR+  GF   G IL++ ++  + V F  L+KGLC   R+ EA   L  ++ 
Sbjct: 97  ILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDILLRRMP 156

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN-GNGEFGVVCKPDAITYSTITDGL 173
            FGC  +V +Y  L+ GLC       AL L   MA+ G+G       P+ +TY+T+ DGL
Sbjct: 157 EFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSH----TPNVVTYTTVIDGL 212

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK   VD+AK +F  M D+ + P+  TYT LI G+     W E   +  EM   G+QP+ 
Sbjct: 213 CKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDC 272

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           V + V+++ LCKNG+  EA  + + +I+ G++P  ++Y  L+ G+   G ++        
Sbjct: 273 VIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDL 332

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           M  NG   D   + I+ N Y K   I+ A+ ++ +M  + + P VV Y
Sbjct: 333 MVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNY 380



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 170/338 (50%), Gaps = 7/338 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
            D M+R   SP     FNI+F   AK    D  + +F ++    L P +  Y  LI+  C
Sbjct: 330 LDLMVRNGVSPDHHI-FNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALC 388

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K+GRV    +   +++    TPD   F+SL+ GLC   +  +A  LF ++   G + +  
Sbjct: 389 KLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAA 448

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            +  L+  LCR G  + A  L + M        V  +PD I+Y+T+ DG C  G +D+A 
Sbjct: 449 FFNILMCNLCREGRVMEAQRLIDLM------LRVDVRPDVISYNTLVDGHCLTGRIDEAA 502

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L   M    + PD  TY +L+ G+C A   ++A  LF EM+ +G+ P VVT+N I++ L
Sbjct: 503 KLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGL 562

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            + G+  EA  L   MI    + D   Y  +++G C    V+ A ++F S+ S     D+
Sbjct: 563 FQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDI 622

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           F+  I+I    K    E A+ L++ + + G+ P V TY
Sbjct: 623 FTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETY 660



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 149/325 (45%), Gaps = 11/325 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D  +R++ +      FNIL   L +         L   +  + + PD+ +YN L++
Sbjct: 436 FEVLDQGIRLNAA-----FFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVD 490

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  GR+     +L  ++     PD  T+ +L+ G C   RI +A +LF ++   G  P
Sbjct: 491 GHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTP 550

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            V TY T+++GL + G    A  L+  M N         K D  TY+ I +GLC+  FVD
Sbjct: 551 GVVTYNTILHGLFQIGRFCEAKELYLNMINNRR------KCDIYTYTIILNGLCRNNFVD 604

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A ++F  +  +++  D+ T   +I          +A  LF  +   G+ P+V T+ +I 
Sbjct: 605 EAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIA 664

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             L K G ++E   L   M + G  P++ + N L+      G + RA      ++     
Sbjct: 665 ENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSKLDEKNFS 724

Query: 301 RDVFSYGILINGYCKNKEIEGALSL 325
            +  +  +LI+ Y + +  + A SL
Sbjct: 725 LEASTTSMLISIYSRAEYQQLAKSL 749


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 191/374 (51%), Gaps = 45/374 (12%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM-------- 65
           PP V S+N++   L K    D   +LF  +   G  P++ TYN +I+  CK         
Sbjct: 136 PPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEA 195

Query: 66  --------GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
                   G++     +L ++      PD VT++ LI   C   R  EA  +F  +   G
Sbjct: 196 VLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRG 255

Query: 118 CKPDVFTYTTLINGLCRTG-----HTIVALNLFEEMANGNGEFGVVCK------------ 160
             PD +TY TL++G    G     H ++AL + + +   +  F ++ +            
Sbjct: 256 QNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAM 315

Query: 161 ------------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                       P+ +TY+T+ D LCK G V+ A   F +M  E ++PD++T+TSLI G 
Sbjct: 316 TAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGL 375

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C   +W + + L  EM+++G+ PN +  N IM+ LCK G++ EA    + +I +GV+PD 
Sbjct: 376 CTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDV 435

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y  L+DG+CL G+++ + +L   M S G   D  +Y  L+NGYCKN  ++ AL+LY E
Sbjct: 436 VSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYRE 495

Query: 329 MLSKGIRPTVVTYN 342
           M SK ++P  +TYN
Sbjct: 496 MFSKDVKPNAITYN 509



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 179/340 (52%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M+R   +P       +L G   K    D +  L   +   G+  + + +NILI  +
Sbjct: 247 IFDSMVRRGQNPDAYTYRTLLHGYATKGALVD-MHDLLALMIQDGIPLEDHVFNILIRAY 305

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K   +         + +  F+P+ VT+T++I  LC   R+ +A + F+++ + G  PD+
Sbjct: 306 AKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDI 365

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+T+LI+GLC  G       L  EM N          P+AI  +TI D LCKEG V +A
Sbjct: 366 ITFTSLIHGLCTIGEWKKVEKLSFEMINRG------IHPNAIFLNTIMDSLCKEGRVLEA 419

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            + F ++    + PDVV+YT LI G+C     +E+  L   M+  G++P+ VT++ ++N 
Sbjct: 420 HDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNG 479

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CKNG++D+A  L   M    V+P+A  YN ++ G    GRV  A+E ++ +  +G    
Sbjct: 480 YCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLG 539

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +Y I++ G C+N  ++ AL ++  + SK  +  V T+N
Sbjct: 540 INTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFN 579



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 167/322 (51%), Gaps = 6/322 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FNIL    AKN+  D  ++ F  +   G  P++ TY  +I+  CK GRV        +++
Sbjct: 298 FNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMV 357

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
               +PD +TFTSLI GLC      +   L  ++   G  P+     T+++ LC+ G  +
Sbjct: 358 SEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVL 417

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A + F+++ +      V  KPD ++Y+ + DG C +G +D++ +L  +M    + PD V
Sbjct: 418 EAHDFFDQIIH------VGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNV 471

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY++L+ G+C     ++A  L+ EM  + V+PN +T+N+I++ L   G++  A      +
Sbjct: 472 TYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKI 531

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           +  G++   + YN ++ G C    V+ A  +F  + S     +V ++ I+I G  K   I
Sbjct: 532 VDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRI 591

Query: 320 EGALSLYSEMLSKGIRPTVVTY 341
             A SL+S +L  G+ P  + Y
Sbjct: 592 GDAKSLFSAILPSGLVPDAIIY 613



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 173/406 (42%), Gaps = 105/406 (25%)

Query: 37  LSLFKRLNSIG---LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT--------- 84
           +SLF  +  +G   L  D  T+ ILI CFC +G +        R  R+            
Sbjct: 76  VSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNC 135

Query: 85  -PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT-------- 135
            P+ +++  +I GL  E  + +A  LF ++   G  P++ TY ++I+GLC+         
Sbjct: 136 PPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEA 195

Query: 136 --------GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
                   G    A+ L ++M+ G        +PD +TYS + D  CK G   +A+ +F 
Sbjct: 196 VLQQMFDKGQLEEAVRLLKKMSGGG------LQPDVVTYSLLIDYYCKIGRCTEARNIFD 249

Query: 188 KMKDENINPDVVTYTSLIRGF---------------------------------CYAND- 213
            M     NPD  TY +L+ G+                                  YA + 
Sbjct: 250 SMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNE 309

Query: 214 -WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA-------------------- 252
             ++A   FIEM  +G  PNVVT+  +++ LCK G++++A                    
Sbjct: 310 TLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFT 369

Query: 253 ---------------SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
                           +L   MI  G+ P+A   NT+MD  C  GRV  A + F  +   
Sbjct: 370 SLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHV 429

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   DV SY ILI+GYC + +++ ++ L   M+S G+RP  VTY+ 
Sbjct: 430 GVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSA 475



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 132/273 (48%), Gaps = 6/273 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P     N +   L K          F ++  +G+ PD+ +Y ILI+ +C  G++     +
Sbjct: 398 PNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKL 457

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LGR++     PD VT+++L+ G C   R+ +A AL+ ++ +   KP+  TY  +++GL  
Sbjct: 458 LGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFH 517

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A   + ++ +   + G+       TY+ +  GLC+  FVD+A  +F  ++ +  
Sbjct: 518 AGRVVAAREFYMKIVDSGIQLGIN------TYNIVLGGLCENSFVDEALRMFQGLRSKEF 571

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +V T+  +I G        +AK LF  ++  G+ P+ + + +++    + G ++E+  
Sbjct: 572 QLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDE 631

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           L   M + G   ++   N ++      G V RA
Sbjct: 632 LFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRA 664



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 6/242 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+ IL      +   D  + L  R+ SIGL PD  TY+ L+N +CK GRV     +
Sbjct: 433 PDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALAL 492

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+A+T+  ++ GL    R++ A   + K+   G +  + TY  ++ GLC 
Sbjct: 493 YREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCE 552

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL +F+ + +   EF +  +    T++ +  GL K G +  AK LF  +    +
Sbjct: 553 NSFVDEALRMFQGLRSK--EFQLEVR----TFNIMIVGLLKVGRIGDAKSLFSAILPSGL 606

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD + Y  +I+         E+  LF+ M   G   N  T N I+ +L + G +  A  
Sbjct: 607 VPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGT 666

Query: 255 LL 256
            L
Sbjct: 667 YL 668


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 193/365 (52%), Gaps = 42/365 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV------ 68
           P V ++N L     K    D    + +R+ S  L PD+ TYN L+N  CK GRV      
Sbjct: 78  PDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARML 137

Query: 69  ------SPGFV---------------------VLGRILRSCFTPDAVTFTSLIKGLCAES 101
                 SP  +                     + G +L+  + P+  T+  LI GL  E 
Sbjct: 138 IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKED 197

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
           R+ EA  LF+ L   G +PD  TYT  I+GLC+ G    AL + ++M          C P
Sbjct: 198 RVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG------CVP 251

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           D ++++ + +GLCKE  VD+A+ L   M+ +  +P+ +++ +LI G C A  W +A   F
Sbjct: 252 DVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTF 311

Query: 222 IEMMDQGVQPNVVTFNVIMNELCK---NGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            EM+ +GV+P VVT+N++++ LCK    G++ EA  L + MI+ G  PD   Y+ L+DG 
Sbjct: 312 KEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGL 371

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
              G+++ A+ L  +ME+ GC+ +V++Y  LI+G C  ++++ AL L+  M+ KG  P  
Sbjct: 372 GKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDT 431

Query: 339 VTYNT 343
           +TY T
Sbjct: 432 ITYGT 436



 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 181/336 (53%), Gaps = 10/336 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R H   P   ++N L   L          +L++R+   G  PD+ TYN L++ FCK+G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +    ++  F PD VT+ +LI G C   ++ EA  +  ++ +    PDV TY +
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE-GFVDKAKELF 186
           L+NGLC+ G    A  L  +             P+ ITYST+  GLC+E   V +A +LF
Sbjct: 121 LVNGLCKNGRVDEARMLIVDKG---------FSPNVITYSTLISGLCRELRGVSEALKLF 171

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             +  +   P+V TY  LI G    +  NEA  LF  ++  G++P+ +T+ V ++ LCK 
Sbjct: 172 GSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKA 231

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G++++A  +L+ M + G  PD   +N +++G C   RV+ A+ L   ME+ GC  +  S+
Sbjct: 232 GRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISF 291

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             LI G C+  + + A++ + EML +G++PTVVTYN
Sbjct: 292 NTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYN 327



 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 181/345 (52%), Gaps = 14/345 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +++ M++   SP  V ++N L     K    D  L +F      G  PD+ TYN LIN F
Sbjct: 32  LYERMIKAGYSPD-VVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGF 90

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  ++     +L R++     PD VT+ SL+ GLC   R+ EA  L       G  P+V
Sbjct: 91  CKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDK---GFSPNV 147

Query: 123 FTYTTLINGLCRTGHTIV-ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            TY+TLI+GLCR    +  AL LF  +     E      P+  TY+ + DGL KE  V++
Sbjct: 148 ITYSTLISGLCRELRGVSEALKLFGSVLKQGYE------PEVPTYNILIDGLLKEDRVNE 201

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A ELF  +    + PD +TYT  I G C A    +A  +  +M ++G  P+VV+ N ++N
Sbjct: 202 AFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVIN 261

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK  ++DEA  LL  M   G  P+A  +NTL+ G C  G+  +A   F  M   G   
Sbjct: 262 GLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKP 321

Query: 302 DVFSYGILINGYCKNKE---IEGALSLYSEMLSKGIRPTVVTYNT 343
            V +Y IL++G CK ++   I+ A++L+  M+ KG  P VVTY+ 
Sbjct: 322 TVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSA 366



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 168/298 (56%), Gaps = 10/298 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G +P+  TYN L++  C  GR+S    +  R++++ ++PD VT+ +L+ G C    + EA
Sbjct: 5   GFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEA 64

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +F      G  PDV TY  LING C+      A  + + M + N        PD +TY
Sbjct: 65  LKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSEN------LVPDVVTY 118

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA-NDWNEAKCLFIEMM 225
           +++ +GLCK G VD+A+ L +   D+  +P+V+TY++LI G C      +EA  LF  ++
Sbjct: 119 NSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVL 175

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            QG +P V T+N++++ L K  +++EA  L   +++ G+ PDA  Y   +DG C  GRV 
Sbjct: 176 KQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 235

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A  +   M+  GC+ DV S+  +ING CK K ++ A  L S M +KG  P  +++NT
Sbjct: 236 DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNT 293



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 123/265 (46%), Gaps = 44/265 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++NIL   L K    +    LF  L   GL PD  TY + I+  CK GRV    ++
Sbjct: 181 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 240

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC---------------- 118
           L  +      PD V+  ++I GLC E R+ EA  L + + A GC                
Sbjct: 241 LKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR 300

Query: 119 -------------------KPDVFTYTTLINGLCRT---GHTIVALNLFEEMANGNGEFG 156
                              KP V TY  L++GLC+    G    A+ LF+ M     E G
Sbjct: 301 AGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMI----EKG 356

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
            V  PD +TYS + DGL K G +D A+ L   M+ +   P+V TY SLI G C     +E
Sbjct: 357 RV--PDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDE 414

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  LF+ M+++G  P+ +T+  I++
Sbjct: 415 ALELFVAMVEKGCVPDTITYGTIIS 439



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%)

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M   G  PN +T+N +++ LC  G+M +A  L E MI+ G  PD   YNTL+ GFC  G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A ++F      G + DV +Y  LING+CK  +++ A  +   M+S+ + P VVTYN+
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 176/343 (51%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             +FD ML    SP  V +++IL     K   Y   + L   + + G  PD+ TYN+LIN
Sbjct: 182 LAVFDDMLHRGCSPS-VVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLIN 240

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  G V     +L  +      PDAVT+T ++K LC   R  E   LF ++ +  C P
Sbjct: 241 AMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAP 300

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  T+ T++  LC+ G    A+ + + M+    E G  C PD +TYS+I DGLC  G VD
Sbjct: 301 DEVTFNTIVTSLCQQGLVDRAIKVVDHMS----EHG--CIPDIVTYSSILDGLCDVGRVD 354

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A EL  ++K     PD + YT++++G C    W  A+ L  EM+     P+ VTFN ++
Sbjct: 355 DAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVI 414

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LC+ G +D A +++E M + G  PD   YN+++DG C    ++ A EL  +++S GC 
Sbjct: 415 ASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCK 474

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D+ ++  L+ G C     E A  L   M+     P   T+NT
Sbjct: 475 PDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNT 517



 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/331 (33%), Positives = 169/331 (51%), Gaps = 14/331 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P PV   NIL   L           +F  L   G    + TYN ++N +C+ GR+     
Sbjct: 95  PLPVVPCNILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDARR 151

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++  +    F PD  TF  LI+ LC   R+ +A A+F  +   GC P V TY+ L++  C
Sbjct: 152 LISGMP---FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATC 208

Query: 134 RTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           +      A+ L +EM A G       C+PD +TY+ + + +C EG VD+A  +   +   
Sbjct: 209 KASGYRQAMVLLDEMRAKG-------CEPDIVTYNVLINAMCNEGDVDEALNILSDLPSH 261

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              PD VTYT +++  C +  W E + LF EM      P+ VTFN I+  LC+ G +D A
Sbjct: 262 GCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRA 321

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            ++++ M + G  PD   Y++++DG C  GRV+ A EL   ++S GC  D  +Y  ++ G
Sbjct: 322 IKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKG 381

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            C  ++ E A  L +EM+     P  VT+NT
Sbjct: 382 LCSIEQWEHAEELMAEMVCSDCPPDEVTFNT 412



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 175/336 (52%), Gaps = 8/336 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           L  H   P   ++  +   L  ++ +  V  LF  + S    PD  T+N ++   C+ G 
Sbjct: 258 LPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGL 317

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     V+  +      PD VT++S++ GLC   R+ +A  L ++L+++GCKPD   YTT
Sbjct: 318 VDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTT 377

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           ++ GLC       A  L  EM   +      C PD +T++T+   LC++G VD+A ++  
Sbjct: 378 VLKGLCSIEQWEHAEELMAEMVCSD------CPPDEVTFNTVIASLCQKGLVDRAIKVVE 431

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M +   NPD+VTY S+I G C     ++A  L   +   G +P++VTFN ++  LC   
Sbjct: 432 QMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVD 491

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           + ++A +L+  M+     PDA+ +NT++   C  G + +A E    M  NGC+ +  +Y 
Sbjct: 492 RWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYN 551

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+++   K  + + AL L S M +    P ++TYNT
Sbjct: 552 IVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNT 585



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 167/361 (46%), Gaps = 39/361 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN +   L +    D  + +   ++  G  PD+ TY+ +++  C +GRV     +
Sbjct: 300 PDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVEL 359

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+      PD + +T+++KGLC+  +   A  L  ++    C PD  T+ T+I  LC+
Sbjct: 360 LSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQ 419

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ + E+M+  NG     C PD +TY++I DGLC E  +D A EL   ++    
Sbjct: 420 KGLVDRAIKVVEQMSE-NG-----CNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGC 473

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VT+ +L++G C  + W +A+ L + MM     P+  TFN ++  LC+ G + +A  
Sbjct: 474 KPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIE 533

Query: 255 LLELMIQIGVRPDASVY---------------------------------NTLMDGFCLT 281
            L++M + G  P+ S Y                                 NT++      
Sbjct: 534 TLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLITYNTVISNITKA 593

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G++  A +L   M SNG   D  +Y  L  G C+    + A+ +   +   G+ P    Y
Sbjct: 594 GKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFY 653

Query: 342 N 342
           N
Sbjct: 654 N 654



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 161/334 (48%), Gaps = 8/334 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           L+ +   P   ++  +   L   + ++    L   +      PD  T+N +I   C+ G 
Sbjct: 363 LKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGL 422

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     V+ ++  +   PD VT+ S+I GLC E  I +A  L + L+++GCKPD+ T+ T
Sbjct: 423 VDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNT 482

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L+ GLC       A  L   M + +      C PDA T++T+   LC++G + +A E   
Sbjct: 483 LLKGLCSVDRWEDAEQLMVNMMHSD------CPPDATTFNTVITSLCQKGLLLQAIETLK 536

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M +    P+  TY  ++     A    EA  L   M +    P+++T+N +++ + K G
Sbjct: 537 IMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAG 594

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           KM+EA  LL +M+  G+ PD   Y +L  G C     +RA  +   ++  G   D   Y 
Sbjct: 595 KMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYN 654

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++ G+C+N   + A+  ++ M+S G  P   TY
Sbjct: 655 DILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTY 688



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 156/321 (48%), Gaps = 8/321 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN +   L +    D  + + ++++  G  PD+ TYN +I+  C    +     
Sbjct: 404 PPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAME 463

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      PD VTF +L+KGLC+  R  +A  L   +    C PD  T+ T+I  LC
Sbjct: 464 LLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLC 523

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G  + A+   + MA  NG     C P+  TY+ + D L K G   +A +L   M   N
Sbjct: 524 QKGLLLQAIETLKIMAE-NG-----CIPNQSTYNIVVDALLKAGKTQEALKLLSGMT--N 575

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD++TY ++I     A    EA  L   M+  G+ P+ +T+  +   +C+    D A 
Sbjct: 576 GTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAI 635

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R+L  +  +G+ PDA+ YN ++ GFC   R + A + F  M S+GCM D  +Y IL+   
Sbjct: 636 RMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEAL 695

Query: 314 CKNKEIEGALSLYSEMLSKGI 334
                ++ A  L   + S G+
Sbjct: 696 AYECLLDEAKQLLVNLCSLGV 716



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 136/286 (47%), Gaps = 8/286 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L   +  D  + L   L S G  PD+ T+N L+   C + R      +
Sbjct: 440 PDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQL 499

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++ S   PDA TF ++I  LC +  +++A      +   GC P+  TY  +++ L +
Sbjct: 500 MVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLK 559

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  AL L   M NG         PD ITY+T+   + K G +++A +L   M    +
Sbjct: 560 AGKTQEALKLLSGMTNGT--------PDLITYNTVISNITKAGKMEEALDLLRVMVSNGL 611

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD +TY SL  G C  +  + A  +   + D G+ P+   +N I+   C+N + D A  
Sbjct: 612 SPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAID 671

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
               M+  G  PD S Y  L++       ++ AK+L V++ S G +
Sbjct: 672 CFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLGVL 717


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 188/359 (52%), Gaps = 31/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +++ +   L K +  D   +  +++ + G+ PD +TYN LI  +   G+      
Sbjct: 253 PPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVR 312

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   + R    PD V   +L+  LC   +I EA  +F  +   G  PDVF+YT ++NG  
Sbjct: 313 VFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA 372

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVC------------------------------KPDA 163
             G  +   +LF+ M  G+G   V+C                              KP  
Sbjct: 373 TKGCLVDMTDLFDLML-GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHV 431

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY T+   LC+ G +D A E F +M D+ + PD   Y  LI+GFC      +AK L  E
Sbjct: 432 VTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISE 491

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           +M+ G++ ++V F  I+N LCK G++ +A  + +L + +G+ PDA VYN LMDG+CL G+
Sbjct: 492 IMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGK 551

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +A  +F +M S G   +V  YG L+NGYCK   I+  LSL+ EML KGI+P+ + YN
Sbjct: 552 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 610



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/313 (35%), Positives = 164/313 (52%), Gaps = 10/313 (3%)

Query: 36  VLSLFKRLNSIG-----LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
            ++LF R  S       L P  YTY IL++C  +  R        G++LR+    DA+  
Sbjct: 92  AVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIA 151

Query: 91  TSLIKGLCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           + L+KG C   R  EA   L  +    GC PDVF+Y  L+  LC  G +  A +L   MA
Sbjct: 152 SHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMA 211

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
            G    G VC PD + Y+T+ DG  KEG V+KA +LF +M    I PD+VTY+S++   C
Sbjct: 212 EG----GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALC 267

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            A   ++A+    +M+++GV P+  T+N ++      G+  EA R+ + M +  + PD  
Sbjct: 268 KARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVV 327

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
             NTLM   C  G++  A+++F +M   G   DVFSY I++NGY     +     L+  M
Sbjct: 328 ALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLM 387

Query: 330 LSKGIRPTVVTYN 342
           L  GI P + T+N
Sbjct: 388 LGDGIAPVICTFN 400



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 180/376 (47%), Gaps = 50/376 (13%)

Query: 10  MHPSP-----PPVCSFNILFGCL---AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +H +P     P V S+NIL   L    K+   D +L +     ++   PD+  YN +I+ 
Sbjct: 172 LHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTV-CSPDVVAYNTVIDG 230

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           F K G V+    +   +++    PD VT++S++  LC    + +A A   ++   G  PD
Sbjct: 231 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPD 290

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +TY  LI G   TG    A+ +F+EM   +        PD +  +T+   LCK G + +
Sbjct: 291 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS------ILPDVVALNTLMGSLCKYGKIKE 344

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGF--------------------------------- 208
           A+++F  M  +  NPDV +YT ++ G+                                 
Sbjct: 345 ARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIK 404

Query: 209 CYAN--DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
            YAN    ++A  +F EM D GV+P+VVT+  ++  LC+ GKMD+A      MI  GV P
Sbjct: 405 AYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVP 464

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y+ L+ GFC  G + +AKEL   + +NG   D+  +G +IN  CK   +  A +++
Sbjct: 465 DKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIF 524

Query: 327 SEMLSKGIRPTVVTYN 342
              ++ G+ P  V YN
Sbjct: 525 DLTVNVGLHPDAVVYN 540



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 158/334 (47%), Gaps = 7/334 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ M R H   P V ++  +   L +    D  +  F ++   G+ PD Y Y+ LI  F
Sbjct: 418 IFNEM-RDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGF 476

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +     ++  I+ +    D V F S+I  LC   R+M+A  +F      G  PD 
Sbjct: 477 CTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 536

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  L++G C  G    AL +F+ M +   E      P+ + Y T+ +G CK G +D+ 
Sbjct: 537 VVYNMLMDGYCLVGKMEKALRVFDAMVSAGIE------PNVVGYGTLVNGYCKIGRIDEG 590

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M  + I P  + Y  +I G   A     AK  F EM + G+  N  T+++++  
Sbjct: 591 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 650

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L KN   DEA  L + +  + V+ D    NT++ G   T RV  AK+LF S+  +G +  
Sbjct: 651 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 710

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
             +Y I+I    K   +E A  ++S M + G  P
Sbjct: 711 AVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 744



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 166/341 (48%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M  M    P V S+ I+    A       +  LF  +   G+ P + T+N+LI  +
Sbjct: 348 VFDTMA-MKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAY 406

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +    ++   +      P  VT+ ++I  LC   ++ +A   F ++   G  PD 
Sbjct: 407 ANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDK 466

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           + Y  LI G C  G  + A  L  E+ N NG      + D + + +I + LCK G V  A
Sbjct: 467 YAYHCLIQGFCTHGSLLKAKELISEIMN-NG-----MRLDIVFFGSIINNLCKLGRVMDA 520

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F    +  ++PD V Y  L+ G+C      +A  +F  M+  G++PNVV +  ++N 
Sbjct: 521 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 580

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G++DE   L   M+Q G++P   +YN ++DG    GR   AK  F  M  +G   +
Sbjct: 581 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMN 640

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y I++ G  KN+  + A+ L+ E+ +  ++  ++T NT
Sbjct: 641 KCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNT 681



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 109/213 (51%), Gaps = 5/213 (2%)

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C +G  + A+ LF   A+   +   V  P + TY+ + D   +    + A   F ++   
Sbjct: 85  CGSGPAL-AVALFNRAAS-RAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRT 142

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDE 251
            +  D +  + L++GFC A   +EA  + +    + G  P+V ++N+++  LC  GK  +
Sbjct: 143 GLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQ 202

Query: 252 ASRLLELMIQIGV--RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           A  LL +M + G    PD   YNT++DGF   G VN+A +LF  M   G   D+ +Y  +
Sbjct: 203 ADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSV 262

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  CK + ++ A +   +M++KG+ P   TYN
Sbjct: 263 VHALCKARAMDKAEAFLRQMVNKGVLPDNWTYN 295



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 7/254 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+     P  V  +  L     K    D  LSLF+ +   G+ P    YNI+I+  
Sbjct: 558 VFDAMVSAGIEPN-VVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + GR  P  V    +  S    +  T++ +++GL       EA  LF +LRA   K D+
Sbjct: 617 FEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDI 676

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T  T+I G+ +T     A +LF  ++      G+V  P A+TYS +   L KEG V++A
Sbjct: 677 ITLNTMIAGMFQTRRVEEAKDLFASISRS----GLV--PCAVTYSIMITNLIKEGLVEEA 730

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +++F  M++    PD      ++R     N+   A     ++ ++      +T  ++++ 
Sbjct: 731 EDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDL 790

Query: 243 LCKNGKMDEASRLL 256
               G   E  R L
Sbjct: 791 FSSKGTCREQIRFL 804


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 128/351 (36%), Positives = 189/351 (53%), Gaps = 15/351 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAK-------NKHYDTVLSLFKRLN---SIGLFPDL 52
           +FD +L  H  P  V +FN L   +++           + V+SLF R+    +I + PD 
Sbjct: 36  LFDGLL-THARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVTPDP 94

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
            TY+ILI CFC+MGR+  GF   G IL+S +  + +    L+KGLC   R+ EA  +  K
Sbjct: 95  CTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVK 154

Query: 113 -LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
            +   GC PDV +Y TL+ G C       AL L   MA+  G     C P+ ++Y+ + +
Sbjct: 155 RMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGR---SCPPNVVSYAIVIN 211

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           G   EG VDKA  LFL+M D  I P+VVTYT++I G C A   + A+ +F +M+D+GV+P
Sbjct: 212 GFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKP 271

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           +  T+N +++     GK  E  R+LE M   G++PD   Y +L++  C  GR   A+ LF
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLF 331

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            SM   G   +V  YGILI+GY     +     L + M+  G+ P    +N
Sbjct: 332 DSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFN 382



 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 180/358 (50%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L K +  D    +F+++   G+ PD  TYN LI+ +  +G+      +
Sbjct: 236 PNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRM 295

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD  T+ SL+  LC   R  EA  LF  +   G KP+V  Y  LI+G   
Sbjct: 296 LEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYAT 355

Query: 135 TG-----HTIVALNLFEEMANGNGEFGVV------------------------CKPDAIT 165
            G     H ++ L +   ++  +  F ++                          PD + 
Sbjct: 356 KGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVN 415

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y  + D LCK G VD A   F +M +E + P++  + SL+ G C  + W +AK  + EM+
Sbjct: 416 YGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEML 475

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           +QG++P+VV FN I+  LC  G++ +A RL++LM ++G RP    Y TL+ G CL GR++
Sbjct: 476 NQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRID 535

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A +    M S G   D ++Y  L++GYC+   I+ A  ++ EML  GI P VVTY+T
Sbjct: 536 EAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYST 593



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 170/340 (50%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R     P V  + IL    A       +  L   +   GL PD + +NI+   +
Sbjct: 330 LFDSMIR-KGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAY 388

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K   +     +  ++ +   +PD V + +LI  LC   R+ +A   F ++   G  P++
Sbjct: 389 AKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNI 448

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           F + +L+ GLC       A   + EM N         +PD + ++TI   LC +G V KA
Sbjct: 449 FVFNSLVYGLCTVDKWEKAKEFYFEMLNQG------IRPDVVFFNTILCNLCTKGQVMKA 502

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + L   M+     P V++YT+LI G C     +EA      M+  G++P+  T+N +++ 
Sbjct: 503 QRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHG 562

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ G++D+A  +   M++ G+ P    Y+T++ G   T R + AKEL+++M ++G   +
Sbjct: 563 YCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWN 622

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++ Y I++NG  KN  ++ A  L+  + SK  +  + T+N
Sbjct: 623 IWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFN 662



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 163/327 (49%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    FNI+F   AK    D  + +F ++   GL PD+  Y  LI+  CK+GRV    + 
Sbjct: 376 PDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLK 435

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+   F SL+ GLC   +  +A   + ++   G +PDV  + T++  LC 
Sbjct: 436 FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCT 495

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  L + M        V  +P  I+Y+T+  G C  G +D+A +    M    +
Sbjct: 496 KGQVMKAQRLIDLMER------VGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGL 549

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY +L+ G+C A   ++A  +F EM+  G+ P VVT++ I++ L    +  EA  
Sbjct: 550 KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKE 609

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   MI  G + +  +YN +++G      V+ A +LF S+ S     ++ ++ I+I    
Sbjct: 610 LYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALF 669

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K+   E A+ L++ + S G+ P V TY
Sbjct: 670 KSGRNEDAMHLFATISSYGLVPDVFTY 696



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 164/332 (49%), Gaps = 6/332 (1%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   ++  L   L  N        LF  +   G+ P++  Y ILI+ +   G +S 
Sbjct: 302 HGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSE 361

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L  ++ +  +PD   F  +      ++ I EA  +F K++  G  PDV  Y  LI+
Sbjct: 362 MHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALID 421

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
            LC+ G    A+  F +M N     GV   P+   ++++  GLC     +KAKE + +M 
Sbjct: 422 ALCKLGRVDDAVLKFNQMMNE----GVA--PNIFVFNSLVYGLCTVDKWEKAKEFYFEML 475

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           ++ I PDVV + +++   C      +A+ L   M   G +P V+++  ++   C  G++D
Sbjct: 476 NQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRID 535

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA++ L++M+ +G++PD   YNTL+ G+C  GR++ A  +F  M  NG    V +Y  ++
Sbjct: 536 EAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTIL 595

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +G    +    A  LY  M++ G +  +  YN
Sbjct: 596 HGLFTTRRFSEAKELYLNMITSGKQWNIWIYN 627



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 18/232 (7%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP----DAITYSTITDGLCK 175
           PD  TY+ LI   CR G           + +G   FG++ K     + I  + +  GLC 
Sbjct: 92  PDPCTYSILIGCFCRMG----------RLEHGFATFGLILKSGWRVNNIVINQLLKGLCD 141

Query: 176 EGFVDKAKELFLK-MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD-QGVQ--P 231
              + +A ++ +K M +    PDVV+Y +L++GFC      EA  L   M D QG    P
Sbjct: 142 AKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPP 201

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           NVV++ +++N     G++D+A  L   M+  G++P+   Y T++DG C    V+RA+ +F
Sbjct: 202 NVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVF 261

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M   G   D  +Y  LI+GY    + +  + +  EM + G++P   TY +
Sbjct: 262 QQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGS 313



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 134/311 (43%), Gaps = 6/311 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  FN +   L           L   +  +G  P + +Y  LI   C +GR+      
Sbjct: 481 PDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKS 540

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD  T+ +L+ G C   RI +A  +F ++   G  P V TY+T+++GL  
Sbjct: 541 LDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFT 600

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A  L+  M     ++ +        Y+ I +GL K   VD+A +LF  +  ++ 
Sbjct: 601 TRRFSEAKELYLNMITSGKQWNI------WIYNIILNGLSKNNCVDEAFKLFQSLCSKDF 654

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++ T+  +I     +    +A  LF  +   G+ P+V T+ +I   L + G ++E   
Sbjct: 655 QLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDD 714

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M + G  P++ + N L+      G + RA      ++      +  +  +LI+   
Sbjct: 715 LFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLISLLS 774

Query: 315 KNKEIEGALSL 325
           +++    A SL
Sbjct: 775 RDEYHHHATSL 785



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 124/286 (43%), Gaps = 34/286 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R+  + P V S+  L G        D        + S+GL PD +TYN L++ +
Sbjct: 505 LIDLMERV-GTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGY 563

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR+   + V   +LR+  TP  VT+++++ GL    R  EA  L+  +   G + ++
Sbjct: 564 CRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNI 623

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM--------------------ANGNGE-------- 154
           + Y  ++NGL +      A  LF+ +                     +G  E        
Sbjct: 624 WIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFAT 683

Query: 155 ---FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
              +G+V  PD  TY  I + L +EG++++  +LF  M+     P+     +L+R   + 
Sbjct: 684 ISSYGLV--PDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHR 741

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            D   A     ++ ++       T  ++++ L ++     A+ L E
Sbjct: 742 GDITRAGAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPE 787



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 61/131 (46%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + +FNI+ G L K+   +  + LF  ++S GL PD++TY ++     + G +     +  
Sbjct: 658 ITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFS 717

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + +S  TP++    +L++ L     I  A A   KL       +  T   LI+ L R  
Sbjct: 718 AMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLISLLSRDE 777

Query: 137 HTIVALNLFEE 147
           +   A +L E+
Sbjct: 778 YHHHATSLPEK 788


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 164/297 (55%), Gaps = 7/297 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PD  T   L+        +     +   +       DA T+  LI GLC   +   A
Sbjct: 72  GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLA 131

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L  K++   CK DVFTY  +I+ LC+ G T  AL++F EM       G    PD + Y
Sbjct: 132 IKLHEKMKG-NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEM------IGAGILPDVVVY 184

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S++ DGLC+ G + +A E F +M+   I+ DV TY SLI G   A  W E       M+D
Sbjct: 185 SSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 244

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G  P+  TF ++++ LCK GK+ EA ++LELM   G  PD   YNTLM+G CL G++  
Sbjct: 245 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLED 304

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A +LF S+   G   +VFSY ILINGYCK+++I+ A  L+ EM  KG++P+ VTYNT
Sbjct: 305 ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNT 361



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 178/329 (54%), Gaps = 17/329 (5%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRL--NSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           ++ IL   L K +     + L +++  N  G   D++TY ++I+  CK G  +    +  
Sbjct: 114 TYGILINGLCKARKTGLAIKLHEKMKGNCKG---DVFTYGMIIDSLCKDGMTTEALDMFS 170

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++ +   PD V ++SL+ GLC   R+ EA   F ++   G   DV+TY +LI+GL R G
Sbjct: 171 EMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAG 230

Query: 137 ---HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                   LNL  +             PDA T++ + DGLCKEG V +A+++   M  + 
Sbjct: 231 LWKEVTWFLNLMVDRG---------FSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKG 281

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD++TY +L+ G C      +A  LF  + D+G++ NV ++N+++N  CK+ K+DEA 
Sbjct: 282 KEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAF 341

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RL E M   G++P    YNTL+   C +GRV  A++LFV M++ G    + +Y +L++G 
Sbjct: 342 RLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGL 401

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CKN  +E A+ L+  +     +P +  ++
Sbjct: 402 CKNGHLEEAIDLFQSIKKTEHKPNIEVFS 430



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 170/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ L   L +       L  FK +   G+  D+YTYN LI+   + G        
Sbjct: 179 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWF 238

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++   F+PDA TFT LI GLC E ++ EA  +   +   G +PD+ TY TL+NGLC 
Sbjct: 239 LNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCL 298

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  LFE +A+         K +  +Y+ + +G CK+  +D+A  LF +M+ + +
Sbjct: 299 VGQLEDATKLFESLADRG------IKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGL 352

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P  VTY +LI   C +     A+ LF+EM   G    + T+ V+++ LCKNG ++EA  
Sbjct: 353 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAID 412

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + + +   +P+  V++ L+DG C  G++  A + F  +  NG   D  +Y ILING C
Sbjct: 413 LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLC 472

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               +  A+ L  +M  KG  P  +T+N
Sbjct: 473 NKGMLSEAVKLLWQMEEKGCLPDSITFN 500



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 161/326 (49%), Gaps = 6/326 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++ ++   L K+      L +F  +   G+ PD+  Y+ L++  C+ GR+        
Sbjct: 146 VFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFK 205

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +     + D  T+ SLI GL       E       +   G  PD FT+T LI+GLC+ G
Sbjct: 206 EMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEG 265

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  + E M +   E      PD +TY+T+ +GLC  G ++ A +LF  + D  I  
Sbjct: 266 KVGEAQQILELMHHKGKE------PDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKL 319

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +V +Y  LI G+C     +EA  LF EM  +G++P+ VT+N ++  LC++G++  A +L 
Sbjct: 320 NVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLF 379

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M   G     S Y  L+DG C  G +  A +LF S++      ++  + IL++G C+ 
Sbjct: 380 VEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRA 439

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++E A   + E+   G+ P  + YN
Sbjct: 440 GKLEEAWKQFDEISKNGLEPDTIAYN 465



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 150/320 (46%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F IL   L K         + + ++  G  PD+ TYN L+N  C +G++     +
Sbjct: 249 PDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKL 308

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       +  ++  LI G C + +I EA  LF ++R  G KP   TY TLI  LC+
Sbjct: 309 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQ 368

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  LF EM    G+F  +      TY  + DGLCK G +++A +LF  +K    
Sbjct: 369 SGRVRTAQKLFVEMQTC-GQFLKLS-----TYCVLLDGLCKNGHLEEAIDLFQSIKKTEH 422

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++  ++ L+ G C A    EA   F E+   G++P+ + +N+++N LC  G + EA +
Sbjct: 423 KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVK 482

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M + G  PD+  +N ++        ++ A +L   M +     D     +L+    
Sbjct: 483 LLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLAS 542

Query: 315 KNKEIEGALSLYSEMLSKGI 334
            + +   AL      L KG+
Sbjct: 543 FDPQWHAALVSLPNALQKGV 562


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/395 (34%), Positives = 197/395 (49%), Gaps = 58/395 (14%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVL------SLFKRLN---SIGLFPDLY 53
           +FD +L  H  P  V +FN L   +++     + L      SLF R+    S  + PD  
Sbjct: 138 LFDLLLP-HARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVRECSDKVAPDRC 196

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA-ALFTK 112
           TY+ILI CFC+MGR+  GF V G IL++ +  + + F  L+KGLC   R+ EA   L  +
Sbjct: 197 TYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILLWR 256

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           +  FGC P+V +Y TL+ G C       AL L   MA+     G+ C PD ++Y+T+ +G
Sbjct: 257 MPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQ---GLSCPPDVVSYNTVING 313

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
             +EG VDKA  LFL+M D  I PDVVTY ++I G C A   + AK +F +M+D+GV+P+
Sbjct: 314 FFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPS 373

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
             T+N +++     GK  E  RLLE M    + PD  +Y  L+D  C  GR   A+ +F 
Sbjct: 374 NGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFD 433

Query: 293 S---------------------MESNGCMRDVFSYGILINGYCKNKEIEGAL-------- 323
           S                     M   G   +V +YG LI+  CK   ++ A+        
Sbjct: 434 SVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMIN 493

Query: 324 ---------------SLYSEMLSKGIRPTVVTYNT 343
                           L  EML +GIR  VV +NT
Sbjct: 494 EVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNT 528



 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 191/376 (50%), Gaps = 53/376 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLF--PDLYTYNILINCFCKMGRVSPG 71
           P V S+N L          +  L L   + +  GL   PD+ +YN +IN F + G+V   
Sbjct: 264 PNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKA 323

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           + +  +++     PD VT+ ++I GLC    +  A A+F ++   G KP   TY  LI+G
Sbjct: 324 YNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHG 383

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG-------------- 177
              TG     + L EEM+  + E      PD   Y+ + D LCK G              
Sbjct: 384 YLSTGKWKEVVRLLEEMSTHDLE------PDCFIYALLLDYLCKNGRCTEARNIFDSVIR 437

Query: 178 -------FVDKAKELFLKMKDENINPDVVTYTSLIR-----------------------G 207
                   +D+A  +F KM+ + ++P+VV Y +LI                        G
Sbjct: 438 KGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYG 497

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    W +A+ L  EM+DQG++ +VV FN +M +LC+ G++ EA RL+ELM+++GVRPD
Sbjct: 498 LCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPD 557

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YNTL+DG CLTGR + A +L   M S G   + F+Y  L++GYCK + I+ A SL  
Sbjct: 558 VISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLR 617

Query: 328 EMLSKGIRPTVVTYNT 343
           EML  G  P VVTYNT
Sbjct: 618 EMLMNGPTPDVVTYNT 633



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 185/402 (46%), Gaps = 73/402 (18%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S+N +     +    D   +LF ++   G+ PD+ TYN +I+  CK   V     
Sbjct: 301 PPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKA 360

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V  ++L     P   T+  LI G  +  +  E   L  ++     +PD F Y  L++ LC
Sbjct: 361 VFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLC 420

Query: 134 RTGHTIVALNLFEEMANGNGEFGV-----VC----------KPDAITYSTITDGLCKEGF 178
           + G    A N+F+ +     +        VC           P+ + Y  + D LCK G 
Sbjct: 421 KNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGR 480

Query: 179 VD-----------------------KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
           VD                       KA+EL  +M D+ I  DVV + +L+   C      
Sbjct: 481 VDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVM 540

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA+ L   M+  GV+P+V+++N +++  C  G+ DEA++LL++M+ IG++P+   YNTL+
Sbjct: 541 EAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLL 600

Query: 276 DGFC-----------------------------------LTGRVNRAKELFVSMESNGCM 300
            G+C                                    TGR + AKEL+++M ++   
Sbjct: 601 HGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQ 660

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            D+++Y I++NG CKN  ++ A  ++  + SKG++  ++T+N
Sbjct: 661 WDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFN 702



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 158/333 (47%), Gaps = 29/333 (8%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF---------- 83
           D  + +F ++   GL P++  Y  LI+  CK+GRV    +   +++   +          
Sbjct: 447 DEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEK 506

Query: 84  -------------TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
                          D V F +L+  LC E R+MEA  L   +   G +PDV +Y TL++
Sbjct: 507 AEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVD 566

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G C TG T  A  L + M +      +  KP+  TY+T+  G CK   +D A  L  +M 
Sbjct: 567 GHCLTGRTDEAAKLLDVMVS------IGLKPNEFTYNTLLHGYCKARRIDDAYSLLREML 620

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
                PDVVTY +++ G      ++EAK L++ M++   Q ++ T+N+I+N LCKN  +D
Sbjct: 621 MNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVD 680

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA ++ + +   G++     +N ++      G+   A +LF ++ + G + DV +Y ++ 
Sbjct: 681 EAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIA 740

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               K   +E    L+S M   G  P     N 
Sbjct: 741 ENLIKEGSLEELGVLFSAMEENGTAPNSRMLNA 773



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 163/355 (45%), Gaps = 32/355 (9%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAK-NKHYDTVLSLFKRLNSI-------------- 46
           CIFD M R     P V ++  L   L K  +  D +L   + +N +              
Sbjct: 451 CIFDKM-RQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEE 509

Query: 47  --------GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
                   G+  D+  +N L+   C+ GRV     ++  +LR    PD +++ +L+ G C
Sbjct: 510 LVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHC 569

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGV 157
              R  EAA L   + + G KP+ FTY TL++G C+      A +L  EM  NG      
Sbjct: 570 LTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGP----- 624

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              PD +TY+TI  GL + G   +AKEL+L M +     D+ TY  ++ G C  N  +EA
Sbjct: 625 --TPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEA 682

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +F  +  +G+Q +++TFN+++  L K GK ++A  L   +   G+ PD   Y  + + 
Sbjct: 683 FKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAEN 742

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
               G +     LF +ME NG   +      L+  +    +I  A +  S++  K
Sbjct: 743 LIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEK 797



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 145/309 (46%), Gaps = 6/309 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  FN L   L +         L + +  +G+ PD+ +YN L++  C  GR      +L 
Sbjct: 523 VVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLD 582

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+  T+ +L+ G C   RI +A +L  ++   G  PDV TY T+++GL +TG
Sbjct: 583 VMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTG 642

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L+  M N   ++      D  TY+ I +GLCK   VD+A ++F  +  + +  
Sbjct: 643 RFSEAKELYLNMINSRTQW------DMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQL 696

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            ++T+  +I          +A  LF  +   G+ P+V T+ +I   L K G ++E   L 
Sbjct: 697 HIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLF 756

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M + G  P++ + N L+  F   G ++RA      ++      +  +  +LI+ Y + 
Sbjct: 757 SAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSRG 816

Query: 317 KEIEGALSL 325
           +  + A SL
Sbjct: 817 EYQQLAKSL 825



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 59/131 (45%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + +FNI+ G L K    +  + LF  +++ GL PD+ TY ++     K G +    V+  
Sbjct: 698 IITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFS 757

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +  +   P++    +L++       I  A A  +KL       +  T + LI+   R  
Sbjct: 758 AMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSRGE 817

Query: 137 HTIVALNLFEE 147
           +  +A +L E+
Sbjct: 818 YQQLAKSLPEK 828


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 194/369 (52%), Gaps = 30/369 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M++   SP  + ++N +   L K +  D   ++ +++   G+ PD +TYN LI  +
Sbjct: 238 LFNEMVQRGISPD-LSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGY 296

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G+      V  ++      PD VT  SL+  LC   +I +A  +F  +   G K D+
Sbjct: 297 SSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDI 356

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM-----ANGNGEFGVVCK----------------- 160
           F+Y  ++NG    G  +    LF  M     A  +  F V+ K                 
Sbjct: 357 FSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNE 416

Query: 161 -------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                  PD +TYST+   LC+ G +D A E F +M D+ + P + TY  LI+GFC   D
Sbjct: 417 MREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGD 476

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
             +AK L ++MM++G++P++  FN I+N LCK G++ +A  + +  I IG+ P+  VYNT
Sbjct: 477 LLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNT 536

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           LMDG+CL G++  A  +F  M S G   +V  YG L+NGYCK   I+  LSL+ E+L KG
Sbjct: 537 LMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKG 596

Query: 334 IRPTVVTYN 342
           I+P+   YN
Sbjct: 597 IKPSTTLYN 605



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 166/312 (53%), Gaps = 9/312 (2%)

Query: 36  VLSLFKRLNSIG----LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFT 91
            ++LF R++       L P L+TY IL++C  +  R        G++L++    D +  +
Sbjct: 88  AVALFNRVSRAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMIS 147

Query: 92  SLIKGLCAESRIMEAA-ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
           +L++GLC   R  EA   L  ++   GC PDVF+Y  ++  LC    +  A  L   MA 
Sbjct: 148 NLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAE 207

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
           G    G VC P+A+ Y+T+ DG  KEG V+KA +LF +M    I+PD+ TY  ++   C 
Sbjct: 208 G----GAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCK 263

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
           A   ++A+ +  +M+D+GV P+  T+N ++      G+  EA R+ + M   G+ PD   
Sbjct: 264 ARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVT 323

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
            N+LM   C  G++  A+++F SM   G   D+FSY I++NGY     +     L++ ML
Sbjct: 324 LNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLML 383

Query: 331 SKGIRPTVVTYN 342
           S GI P    +N
Sbjct: 384 SDGIAPDSHIFN 395



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 165/340 (48%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M  M      + S+ I+    A       +  LF  + S G+ PD + +N+LI  +
Sbjct: 343 VFDSM-AMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAY 401

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G +    ++   +      PD VT++++I  LC   ++ +A   F ++   G  P +
Sbjct: 402 AKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSI 461

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LI G C  G  + A +L  +M N         +PD   ++ I + LCK G V  A
Sbjct: 462 STYHFLIQGFCTHGDLLKAKDLVLQMMNKG------MRPDIGCFNFIINNLCKLGRVMDA 515

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F       ++P+V+ Y +L+ G+C       A  +F  M+  G+QPNVV +  ++N 
Sbjct: 516 QNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNG 575

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G++DE   L   ++  G++P  ++YN ++ G    GR   AK  F  M  +G   D
Sbjct: 576 YCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMD 635

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++Y I++ G  KN   + A+ L+ E+ +  ++  + T N
Sbjct: 636 RYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLN 675



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 159/328 (48%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    FN+L    AK    D    +F  +   G+ PD+ TY+ +I   C++G++      
Sbjct: 389 PDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEK 448

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P   T+  LI+G C    +++A  L  ++   G +PD+  +  +IN LC+
Sbjct: 449 FNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCK 508

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A N+F+          +   P+ + Y+T+ DG C  G ++ A  +F  M    I
Sbjct: 509 LGRVMDAQNIFD------FTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGI 562

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV Y +L+ G+C     +E   LF E++ +G++P+   +N+I++ L + G+   A  
Sbjct: 563 QPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKV 622

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M + G+  D   Y+ ++ G       + A  LF  + +     D+ +  I+I G  
Sbjct: 623 KFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMF 682

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + + +E A  L++ +   G+ P+VVTY+
Sbjct: 683 QIRRVEEAKDLFASISRSGLVPSVVTYS 710



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 158/331 (47%), Gaps = 7/331 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ M R     P V +++ +   L +    D  +  F ++   G+ P + TY+ LI  F
Sbjct: 413 IFNEM-REQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGF 471

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +     ++ +++     PD   F  +I  LC   R+M+A  +F    + G  P+V
Sbjct: 472 CTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNV 531

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y TL++G C  G    AL +F+ M +         +P+ + Y T+ +G CK G +D+ 
Sbjct: 532 MVYNTLMDGYCLVGKMENALRVFDVMVSAG------IQPNVVVYGTLVNGYCKVGRIDEG 585

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF ++  + I P    Y  ++ G   A     AK  F EM + G+  +  T+++++  
Sbjct: 586 LSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGG 645

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L KN   DEA  L + +  + V+ D +  N ++ G     RV  AK+LF S+  +G +  
Sbjct: 646 LFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPS 705

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           V +Y I++    K   +E A  ++S M + G
Sbjct: 706 VVTYSIMMTNLIKEGLVEEADDMFSSMENAG 736



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 126/283 (44%), Gaps = 12/283 (4%)

Query: 3   IFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           IFD+ +   +HP+   V  +N L          +  L +F  + S G+ P++  Y  L+N
Sbjct: 518 IFDFTISIGLHPN---VMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVN 574

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK+GR+  G  +   IL     P    +  ++ GL    R + A   F ++   G   
Sbjct: 575 GYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAM 634

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D +TY+ ++ GL +   +  A+ LF+E+   N       K D  T + +  G+ +   V+
Sbjct: 635 DRYTYSIVLGGLFKNSCSDEAILLFKELHAMN------VKIDITTLNIMIAGMFQIRRVE 688

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-QPNVVTFNVI 239
           +AK+LF  +    + P VVTY+ ++          EA  +F  M + G  QPN    N +
Sbjct: 689 EAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQPNSQLLNHV 748

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           + EL +  ++  A   L  + +     D S    L+D F   G
Sbjct: 749 VRELLEKREIVRAGTYLSKIDERSFSLDHSTTTLLIDLFSSKG 791


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/328 (36%), Positives = 183/328 (55%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L +  H    L +   +   G  PD++TYN LI   CK+G V     +
Sbjct: 314 PDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEI 373

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++   F+P+ VT+ +LI  LC E+++ EA  L   L + G  PDV T+ +LI GLC 
Sbjct: 374 LNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 433

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T +  +A+ LFEEM          C PD  TY+ + D LC  G +++A  L  +M+    
Sbjct: 434 TNNHRLAMELFEEMKTKG------CHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGC 487

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + +VVTY +LI GFC      EA+ +F EM  QG+  NVVT+N +++ LCKN +++EA++
Sbjct: 488 SRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQ 547

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ M+  G++PD   YN+L+  FC  G + +A ++  +M SNGC  D  +YG LI G  
Sbjct: 548 LMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLS 607

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +E A  L   +  KG+     TYN
Sbjct: 608 KAGRVELASRLLRTVQLKGMVLAPQTYN 635



 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 185/359 (51%), Gaps = 31/359 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FNIL   L +       + + + + S GL PD  T+  L+  F + G ++    +
Sbjct: 209 PDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRI 268

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ +      VT   L+ G C E RI E  +   ++   G +PD FT+ +L+NGLCR
Sbjct: 269 REQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCR 328

Query: 135 TGHTIVALNLFEEMANGNGE----------FGVVCK--------------------PDAI 164
            GH   AL + + M     +          FG+ CK                    P+ +
Sbjct: 329 IGHVKHALEILDVMLQEGFDPDIFTYNSLIFGL-CKLGEVEEAVEILNQMILRDFSPNTV 387

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY+T+   LCKE  V++A EL   +  + I PDV T+ SLI+G C  N+   A  LF EM
Sbjct: 388 TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEM 447

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
             +G  P+  T+N++++ LC  G+++EA  LL+ M   G   +   YNTL+DGFC   R+
Sbjct: 448 KTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRI 507

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A+E+F  ME  G  R+V +Y  LI+G CKN+ +E A  L  +ML +G++P   TYN+
Sbjct: 508 EEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNS 566



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 177/355 (49%), Gaps = 30/355 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           +F IL    AK + +D  +++   +    GL  D +TYN L+N      ++    +V  R
Sbjct: 142 TFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSR 201

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           ++     PD  TF  LIK LC   +I  A  +  ++ ++G  PD  T+TTL+ G    G+
Sbjct: 202 MVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGN 261

Query: 138 TIVALNLFEEMA-----NGNGEFGVV----CK--------------------PDAITYST 168
              AL + E+M      + N    V+    CK                    PD  T+++
Sbjct: 262 MNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNS 321

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           + +GLC+ G V  A E+   M  E  +PD+ TY SLI G C   +  EA  +  +M+ + 
Sbjct: 322 LVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRD 381

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
             PN VT+N +++ LCK  +++EA+ L  ++   G+ PD   +N+L+ G CLT     A 
Sbjct: 382 FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAM 441

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ELF  M++ GC  D F+Y +LI+  C    +E ALSL  EM S G    VVTYNT
Sbjct: 442 ELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNT 496



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 160/330 (48%), Gaps = 6/330 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P    + N+L     K    + VLS    +++ G  PD +T+N L+N  C++G V     
Sbjct: 278 PSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALE 337

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +L+  F PD  T+ SLI GLC    + EA  +  ++      P+  TY TLI+ LC
Sbjct: 338 ILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLC 397

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A  L   + +     G++  PD  T++++  GLC       A ELF +MK + 
Sbjct: 398 KENQVEEATELARVLTSK----GIL--PDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKG 451

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +PD  TY  LI   C      EA  L  EM   G   NVVT+N +++  CKN +++EA 
Sbjct: 452 CHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAE 511

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + + M   G+  +   YNTL+DG C   RV  A +L   M   G   D F+Y  L+  +
Sbjct: 512 EIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYF 571

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C+  +I+ A  +   M S G  P  VTY T
Sbjct: 572 CRAGDIKKAADIVQTMTSNGCEPDSVTYGT 601



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 153/328 (46%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L K    +    L + L S G+ PD+ T+N LI   C          +
Sbjct: 384 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMEL 443

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD  T+  LI  LC+  R+ EA +L  ++ + GC  +V TY TLI+G C+
Sbjct: 444 FEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCK 503

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +F+EM     E   + + + +TY+T+ DGLCK   V++A +L  +M  E +
Sbjct: 504 NKRIEEAEEIFDEM-----ELQGISR-NVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGL 557

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY SL+  FC A D  +A  +   M   G +P+ VT+  ++  L K G+++ ASR
Sbjct: 558 KPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASR 617

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  +   G+      YN ++       R + A  LF  M   G   D  +Y ++  G C
Sbjct: 618 LLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLC 677

Query: 315 K-NKEIEGALSLYSEMLSKGIRPTVVTY 341
                I  A+    EM  KG  P   ++
Sbjct: 678 SGGGPIGEAVDFLVEMTDKGFLPDFSSF 705



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 136/319 (42%), Gaps = 50/319 (15%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N+L   L      +  LSL K + S G   ++ TYN LI+ FCK  R+     +
Sbjct: 454 PDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEI 513

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     + + VT+ +LI GLC   R+ EAA L  ++   G KPD FTY +L+   CR
Sbjct: 514 FDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCR 573

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD-------------- 180
            G    A ++ + M + NG     C+PD++TY T+  GL K G V+              
Sbjct: 574 AGDIKKAADIVQTMTS-NG-----CEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGM 627

Query: 181 ---------------------KAKELFLKMKDENINPDVVTYTSLIRGFCYAN-DWNEAK 218
                                +A  LF +M ++   PD VTY  + RG C       EA 
Sbjct: 628 VLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAV 687

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV-------- 270
              +EM D+G  P+  +F ++   LC     D   +L+  +++     D+ V        
Sbjct: 688 DFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQANFSDSEVSMIMGFLK 747

Query: 271 YNTLMDGFCLTGRVNRAKE 289
                D     GR+  ++E
Sbjct: 748 IRKFQDALATLGRILSSRE 766



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 107/260 (41%), Gaps = 41/260 (15%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P  FT   L + L R       L+L +  A+    F     P ++ Y  +   L K+G  
Sbjct: 67  PQNFTPKQLRDALRRQSDEDSILDLLD-WASKQPNF----VPSSVIYEEVLRKLGKDGSF 121

Query: 180 DKAKELFLKMK------------------------DENI------------NPDVVTYTS 203
              + +  +MK                        DE +              D  TY  
Sbjct: 122 GSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNF 181

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+      N     + +   M+ +G++P+V TFN+++  LC+  ++  A  ++E M   G
Sbjct: 182 LLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYG 241

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           + PD   + TLM GF   G +N A  +   M + GC     +  +L++GYCK   IE  L
Sbjct: 242 LSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVL 301

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
           S   EM ++G RP   T+N+
Sbjct: 302 SFIDEMSNEGFRPDRFTFNS 321


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 175/343 (51%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             +FD ML    SP  V +++IL     K   Y   ++L   + + G  PD+ TYN+LIN
Sbjct: 271 LAVFDDMLHRGCSPS-VVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLIN 329

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  G V     +L  +      PDAVT+T ++K LC   R  E   L  ++ +  C P
Sbjct: 330 AMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAP 389

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  T+ T++  LC+ G    A+ + + M+    E G  C  D +TYS+I DGLC  G VD
Sbjct: 390 DEVTFNTIVTSLCQQGLVDRAIEVVDHMS----EHG--CVADIVTYSSILDGLCDVGRVD 443

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A EL  ++K     PD + YT++++G C    W  A+ L  EM+     P+ VTFN ++
Sbjct: 444 DAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVV 503

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LC+ G +D A R++E M + G  PD   YN ++DG C    ++ A EL   ++S GC 
Sbjct: 504 ASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCK 563

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D+ ++  L+ G C     E A  L + M+     P  +T+NT
Sbjct: 564 PDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNT 606



 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 168/330 (50%), Gaps = 14/330 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           PPV   NIL   L  +        +F    ++G    + TYN ++N +C+ GR+     +
Sbjct: 185 PPVVPCNILIKRLCSDGRVSDAERVFA---ALGPSATVVTYNTMVNGYCRAGRIEDARRL 241

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +    F PD  TF  LI+ LC   RI +A A+F  +   GC P V TY+ L++  C+
Sbjct: 242 INGMP---FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCK 298

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                 A+ L +EM A G       C+PD +TY+ + + +C EG VD+A  +   +    
Sbjct: 299 ESGYRQAMALLDEMRAKG-------CEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHG 351

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD VTYT +++  C +  W E + L  EM      P+ VTFN I+  LC+ G +D A 
Sbjct: 352 CKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAI 411

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +++ M + G   D   Y++++DG C  GRV+ A EL   ++S GC  D  +Y  ++ G 
Sbjct: 412 EVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL 471

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C  ++ E A  L +EML     P  VT+NT
Sbjct: 472 CSTEQWERAEELMAEMLCSDCPPDEVTFNT 501



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 173/336 (51%), Gaps = 8/336 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           L  H   P   ++  +   L  ++ +  V  L   + S    PD  T+N ++   C+ G 
Sbjct: 347 LPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGL 406

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     V+  +       D VT++S++ GLC   R+ +A  L ++L+++GCKPD   YTT
Sbjct: 407 VDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTT 466

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           ++ GLC T     A  L  EM   +      C PD +T++T+   LC++G VD+A  +  
Sbjct: 467 VLKGLCSTEQWERAEELMAEMLCSD------CPPDEVTFNTVVASLCQKGLVDRAIRVVE 520

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M +   +PD+VTY  +I G C  +  ++A  L  ++   G +P++VTFN ++  LC   
Sbjct: 521 QMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVD 580

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           + ++A +L+  M++    PD   +NT++   C  G + +A E    M  NGC+ +  +Y 
Sbjct: 581 RWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYS 640

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+++   K  + + AL L S M +    P ++TYNT
Sbjct: 641 IVVDALLKAGKAQAALELLSGMTNG--TPDLITYNT 674



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 161/330 (48%), Gaps = 29/330 (8%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           +N +   PD +T+N LI   C  GR+     V   +L    +P  VT++ L+   C ES 
Sbjct: 242 INGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESG 301

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN------------ 150
             +A AL  ++RA GC+PD+ TY  LIN +C  G    ALN+   + +            
Sbjct: 302 YRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTP 361

Query: 151 ------GNGEFGVV-----------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                 G+  +  V           C PD +T++TI   LC++G VD+A E+   M +  
Sbjct: 362 VLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHG 421

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              D+VTY+S++ G C     ++A  L   +   G +P+ + +  ++  LC   + + A 
Sbjct: 422 CVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAE 481

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L+  M+     PD   +NT++   C  G V+RA  +   M  NGC  D+ +Y  +I+G 
Sbjct: 482 ELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGL 541

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C    I+ A+ L S++ S G +P +VT+NT
Sbjct: 542 CNESCIDDAMELLSDLQSCGCKPDIVTFNT 571



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 166/361 (45%), Gaps = 39/361 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN +   L +    D  + +   ++  G   D+ TY+ +++  C +GRV     +
Sbjct: 389 PDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVEL 448

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+      PD + +T+++KGLC+  +   A  L  ++    C PD  T+ T++  LC+
Sbjct: 449 LSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQ 508

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ + E+M+  NG     C PD +TY+ I DGLC E  +D A EL   ++    
Sbjct: 509 KGLVDRAIRVVEQMSE-NG-----CSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGC 562

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VT+ +L++G C  + W +A+ L   MM     P+ +TFN ++  LC+ G + +A  
Sbjct: 563 KPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIE 622

Query: 255 LLELMIQIGVRPDASVY---------------------------------NTLMDGFCLT 281
            L++M + G  P++S Y                                 NT++      
Sbjct: 623 TLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISNLTKA 682

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G++  A +L   M SNG   D  +Y  L  G C+    + A+ +   +   G+ P    Y
Sbjct: 683 GKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFY 742

Query: 342 N 342
           N
Sbjct: 743 N 743



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 152/321 (47%), Gaps = 8/321 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN +   L +    D  + + ++++  G  PD+ TYN +I+  C    +     
Sbjct: 493 PPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAME 552

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      PD VTF +L+KGLC   R  +A  L   +    C PD  T+ T+I  LC
Sbjct: 553 LLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLC 612

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+   + MA  NG     C P++ TYS + D L K G    A EL   M   N
Sbjct: 613 QKGLLTQAIETLKIMAE-NG-----CVPNSSTYSIVVDALLKAGKAQAALELLSGMT--N 664

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD++TY ++I     A    EA  L   M+  G+ P+  T+  +   +C+    D A 
Sbjct: 665 GTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAV 724

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R+L  +   G+ PD + YN ++ GFC   R + A + F  M S+GCM D  +Y IL+   
Sbjct: 725 RMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEAL 784

Query: 314 CKNKEIEGALSLYSEMLSKGI 334
                ++ A  L + + S G+
Sbjct: 785 AYGGLLDEAKRLLASLCSLGV 805



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 160/327 (48%), Gaps = 8/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  +   L   + ++    L   +      PD  T+N ++   C+ G V     V
Sbjct: 459 PDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRV 518

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++  +  +PD VT+  +I GLC ES I +A  L + L++ GCKPD+ T+ TL+ GLC 
Sbjct: 519 VEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCG 578

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L   M   N      C PD +T++T+   LC++G + +A E    M +   
Sbjct: 579 VDRWEDAEQLMANMMRSN------CPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGC 632

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY+ ++     A    +A    +  M  G  P+++T+N +++ L K GKM+EA  
Sbjct: 633 VPNSSTYSIVVDALLKAGK-AQAALELLSGMTNGT-PDLITYNTVISNLTKAGKMEEALD 690

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL +M+  G+ PD + Y +L  G C     +RA  +   ++  G   D   Y  ++ G+C
Sbjct: 691 LLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFC 750

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +++  + A+  ++ M+S G  P   TY
Sbjct: 751 RDRRTDLAIDCFAHMVSSGCMPDESTY 777



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 128/264 (48%), Gaps = 14/264 (5%)

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R+C  P  V    LIK LC++ R+ +A  +F    A G    V TY T++NG CR G   
Sbjct: 182 RNC--PPVVPCNILIKRLCSDGRVSDAERVFA---ALGPSATVVTYNTMVNGYCRAGRIE 236

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L           G+   PD  T++ +   LC  G +  A  +F  M     +P VV
Sbjct: 237 DARRLIN---------GMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVV 287

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY+ L+   C  + + +A  L  EM  +G +P++VT+NV++N +C  G +DEA  +L  +
Sbjct: 288 TYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNL 347

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              G +PDA  Y  ++   C + R    +EL   M SN C  D  ++  ++   C+   +
Sbjct: 348 PSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLV 407

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           + A+ +   M   G    +VTY++
Sbjct: 408 DRAIEVVDHMSEHGCVADIVTYSS 431



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 132/286 (46%), Gaps = 8/286 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L      D  + L   L S G  PD+ T+N L+   C + R      +
Sbjct: 529 PDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQL 588

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++RS   PD +TF ++I  LC +  + +A      +   GC P+  TY+ +++ L +
Sbjct: 589 MANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLK 648

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL L   M NG         PD ITY+T+   L K G +++A +L   M    +
Sbjct: 649 AGKAQAALELLSGMTNGT--------PDLITYNTVISNLTKAGKMEEALDLLRVMVSNGL 700

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY SL  G C  +  + A  +   + D G+ P+   +N ++   C++ + D A  
Sbjct: 701 CPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAID 760

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
               M+  G  PD S Y  L++     G ++ AK L  S+ S G +
Sbjct: 761 CFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGVL 806



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 31/243 (12%)

Query: 129 INGLCRTGHTIVALNLFEEMANGNGE-----------FGVVCK---------------PD 162
           +  L + G    AL LF+ MA+G G               +C                P 
Sbjct: 157 LRSLVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAALGPS 216

Query: 163 A--ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           A  +TY+T+ +G C+ G ++ A+ L   M      PD  T+  LIR  C      +A  +
Sbjct: 217 ATVVTYNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVRGRIPDALAV 273

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           F +M+ +G  P+VVT++++++  CK     +A  LL+ M   G  PD   YN L++  C 
Sbjct: 274 FDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCN 333

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G V+ A  +  ++ S+GC  D  +Y  ++   C ++  +    L +EM S    P  VT
Sbjct: 334 EGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVT 393

Query: 341 YNT 343
           +NT
Sbjct: 394 FNT 396


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 181/341 (53%), Gaps = 7/341 (2%)

Query: 4   FDYMLRMHP-SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           F + L+ +P S P   S N L   L K KHYD V+S+  ++ S+ +FP   + + LI  F
Sbjct: 45  FHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESF 104

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
               + S  F VLG I++  F  +   F  L+KG C      +A  LF  ++     PD 
Sbjct: 105 VNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDC 164

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y T+INGLC+    + A  LF+EM  G       CKP+++T+S + DG CK G V++ 
Sbjct: 165 VSYNTVINGLCKGKRLVEAKELFKEMKGGE------CKPNSVTFSALIDGFCKNGDVEEG 218

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L  +M+   +  DV  Y++LI GFC   D    K LF EM+ + V PNVVT++ +MN 
Sbjct: 219 FGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNA 278

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK  K  EA+++L+ M    VRPD   Y  L DG    GR + A ++   M   G   +
Sbjct: 279 LCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPN 338

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y  +ING CK   ++ AL +   M  KG +P VVTY+T
Sbjct: 339 NVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYST 379



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 161/320 (50%), Gaps = 5/320 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ MLR + +P  V +++ L   L K + +     +   +    + PD+  Y +L +  
Sbjct: 256 LFNEMLRKNVTPN-VVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGL 314

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K GR S    VL  +++    P+ VT+ ++I GLC E R+ +A  +   +   G KPDV
Sbjct: 315 SKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDV 374

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY+TL+ GLC  G    A++L   + +   EF +  KPD   ++ +   LCK+  +  A
Sbjct: 375 VTYSTLVKGLCGVGKIDEAVDLLNLLMSK--EFHI--KPDVFAFNLVIQELCKQRRLRHA 430

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K ++  M +     ++VTY  LI G+  A    +A  L+ + +D G+ PN  T+ V++N 
Sbjct: 431 KRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLING 490

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK   +  A  L       G RP  S YNTLM   C    V +A+ LF  M +     D
Sbjct: 491 LCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPD 550

Query: 303 VFSYGILINGYCKNKEIEGA 322
           V S+ I+I+G  K  ++E A
Sbjct: 551 VVSFNIIIDGTLKAGDVESA 570



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 163/331 (49%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   L+KN      + +   +   G  P+  TYN +IN  CK GRV     +
Sbjct: 302 PDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGI 361

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGL 132
           L  + +    PD VT+++L+KGLC   +I EA  L   L  + F  KPDVF +  +I  L
Sbjct: 362 LETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQEL 421

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+      A  ++  M     E G     + +TY+ + DG    G + KA EL+    D 
Sbjct: 422 CKQRRLRHAKRVYYTMV----ERGF--PSNIVTYNILIDGYLSAGKLTKALELWKDAVDS 475

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            I+P+  TYT LI G C     + AK LF +    G +P V  +N +M  LC+   +++A
Sbjct: 476 GISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQA 535

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L + M      PD   +N ++DG    G V  AKEL + M +   + D  ++ ILIN 
Sbjct: 536 RNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINR 595

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + K  +++ A SLY  M+S G  P  V +++
Sbjct: 596 FLKLGQLDEAASLYERMVSCGHVPDAVLFDS 626



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 165/325 (50%), Gaps = 13/325 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNS--IGLFPDLYTYNILINCFCKMGRVSPGF 72
           P V +++ L   L      D  + L   L S    + PD++ +N++I   CK  R+    
Sbjct: 372 PDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAK 431

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V   ++   F  + VT+  LI G  +  ++ +A  L+      G  P+  TYT LINGL
Sbjct: 432 RVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGL 491

Query: 133 CRTGHTIVALNLF-EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           C+     +A  LF ++ A+G        +P    Y+T+   LC+E  V++A+ LF +M++
Sbjct: 492 CKMQMLSIAKGLFNKKRASGT-------RPTVSEYNTLMASLCRESSVEQARNLFQEMRN 544

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
            N +PDVV++  +I G   A D   AK L +EM++  + P+ +TF++++N   K G++DE
Sbjct: 545 ANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDE 604

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A+ L E M+  G  PDA ++++L+ G+ L G+  +   +   M     + D      ++ 
Sbjct: 605 AASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILA 664

Query: 312 GYC---KNKEIEGALSLYSEMLSKG 333
             C   K+ +IE  L  +S+  S G
Sbjct: 665 CLCNMSKDVDIEKILPKFSQHTSVG 689


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/229 (47%), Positives = 154/229 (67%), Gaps = 6/229 (2%)

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
           A G +PDV TYTT+INGLC+ G T+ A  LF++M    GE G  C+PD +TYSTI D LC
Sbjct: 3   ARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKM----GEAG--CQPDVVTYSTIIDSLC 56

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+  V++A ++F  MK + I+P++ TY SLI+G C  + W EA  +  EMM   + PN+V
Sbjct: 57  KDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIV 116

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           TF++++N  CK G + EA  +L+ M ++GV P+   Y++LM+G+ L   V  A++LF  M
Sbjct: 117 TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVM 176

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + GC  DVFSY ILINGYCK K I  A  L++EM+ +G+ P +V+YNT
Sbjct: 177 ITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNT 225



 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 104/296 (35%), Positives = 172/296 (58%), Gaps = 6/296 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PD++TY  +IN  CK+G       +  ++  +   PD VT++++I  LC + R+ EA
Sbjct: 5   GYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 64

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +F+ ++A G  P++FTY +LI GLC       A  +  EM + N        P+ +T+
Sbjct: 65  LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN------IMPNIVTF 118

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S + +  CKEG V +A+ +   M +  + P+VVTY+SL+ G+    +  EA+ LF  M+ 
Sbjct: 119 SLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMIT 178

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G +P+V ++N+++N  CK  ++ EA +L   MI  G+ PD   YNTL+DG C  GR+  
Sbjct: 179 KGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLRE 238

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           A +LF +M +NG + D+ +Y IL++G+CK   +  A  L+  M S  ++P +V YN
Sbjct: 239 AHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYN 294



 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 183/327 (55%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L K         LFK++   G  PD+ TY+ +I+  CK  RV+    +
Sbjct: 8   PDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDI 67

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P+  T+ SLI+GLC  SR  EA+A+  ++ +    P++ T++ LIN  C+
Sbjct: 68  FSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCK 127

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  + + M     E GV  +P+ +TYS++ +G   +  V +A++LF  M  +  
Sbjct: 128 EGNVFEARGVLKTMT----EMGV--EPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGC 181

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV +Y  LI G+C A    EAK LF EM+ QG+ P++V++N +++ LC+ G++ EA  
Sbjct: 182 KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHD 241

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+  G  PD   Y+ L+DGFC  G + +A  LF +M+S     ++  Y ILI+  C
Sbjct: 242 LFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMC 301

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K++ ++ A  L+SE+  +G++P +  +
Sbjct: 302 KSRNLKEARKLFSELFVQGLQPNMKHW 328



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 70/119 (58%)

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+ +G QP+V T+  I+N LCK G+   A+ L + M + G +PD   Y+T++D  C   R
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           VN A ++F  M++ G   ++F+Y  LI G C       A ++ +EM+S  I P +VT++
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFS 119



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%)

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+  G +PD   Y T+++G C  G    A  LF  M   GC  DV +Y  +I+  CK++ 
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           +  AL ++S M +KGI P + TYN+
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNS 85


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 189/333 (56%), Gaps = 10/333 (3%)

Query: 15  PPVCSFNILFGCLAKN-KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V +++ L   L +  +  ++   L +++   G  PD+ +YN LI+   +   VS    
Sbjct: 220 PNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALK 279

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + G +LR  + P+  T+  LI GL  E R+ EA  LF+ L   G +PD  TYT  I+GLC
Sbjct: 280 LFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLC 339

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    AL + ++M          C PD ++++ + +GLCKE  VD+A+ L   M+ + 
Sbjct: 340 KAGRVEDALLMLKDMDEKG------CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 393

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK---NGKMD 250
            +P+ +++ +LI G C A  W +A   F EM+ +GV+P VVT+N++++ LCK    G++ 
Sbjct: 394 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIK 453

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA  L + MI+ G  PD   Y+ L+DG    G+++ A+ L  +ME+ GC+ +V++Y  LI
Sbjct: 454 EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLI 513

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G C   +++ AL L+  M+ KG  P  +TY T
Sbjct: 514 SGLCGLDKVDEALELFVAMVEKGCVPDTITYGT 546



 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 181/342 (52%), Gaps = 11/342 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R H   P   ++N L   L          +L++R+   G  PD+ TYN L++ F
Sbjct: 72  VFDGM-RKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGF 130

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+G++     +    ++  F PD VT+ +LI G C   ++ EA  +  ++ +    PDV
Sbjct: 131 CKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDV 190

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE-GFVDK 181
            TY +L+NGLC+ G    A  L  +             P+ ITYST+  GLC+E   ++ 
Sbjct: 191 VTYNSLVNGLCKNGRVDEARMLIVDKG---------FSPNVITYSTLISGLCRELRRLES 241

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A++L  KM      PD+V+Y +LI G       +EA  LF  ++ QG +P V T+N++++
Sbjct: 242 ARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILID 301

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            L K  +++EA  L   +++ G+ PDA  Y   +DG C  GRV  A  +   M+  GC+ 
Sbjct: 302 GLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVP 361

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           DV S+  +ING CK K ++ A  L S M +KG  P  +++NT
Sbjct: 362 DVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNT 403



 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 188/342 (54%), Gaps = 13/342 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +++ M++   SP  V ++N L     K    D  L +F      G  PD+ TYN LIN F
Sbjct: 107 LYERMIKAGYSPD-VVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGF 165

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  ++     +L R++     PD VT+ SL+ GLC   R+ EA  L       G  P+V
Sbjct: 166 CKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDK---GFSPNV 222

Query: 123 FTYTTLINGLCRTGHTI-VALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            TY+TLI+GLCR    +  A  L E+M  NG       CKPD ++Y+ +  GL +E  V 
Sbjct: 223 ITYSTLISGLCRELRRLESARQLLEKMVLNG-------CKPDIVSYNALIHGLAREQGVS 275

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A +LF  +  +   P+V TY  LI G    +  NEA  LF  ++  G++P+ +T+ V +
Sbjct: 276 EALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 335

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK G++++A  +L+ M + G  PD   +N +++G C   RV+ A+ L   ME+ GC 
Sbjct: 336 DGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCS 395

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  S+  LI G C+  + + A++ + EML +G++PTVVTYN
Sbjct: 396 PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYN 437



 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 180/333 (54%), Gaps = 13/333 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    D    + +R+ S  L PD+ TYN L+N  CK GRV    ++
Sbjct: 153 PDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARML 212

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA-ALFTKLRAFGCKPDVFTYTTLINGLC 133
              I+   F+P+ +T+++LI GLC E R +E+A  L  K+   GCKPD+ +Y  LI+GL 
Sbjct: 213 ---IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLA 269

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R      AL LF  +     E      P+  TY+ + DGL KE  V++A ELF  +    
Sbjct: 270 REQGVSEALKLFGSVLRQGYE------PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHG 323

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT  I G C A    +A  +  +M ++G  P+VV+ N ++N LCK  ++DEA 
Sbjct: 324 LEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAE 383

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL  M   G  P+A  +NTL+ G C  G+  +A   F  M   G    V +Y IL++G 
Sbjct: 384 VLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL 443

Query: 314 CKNKE---IEGALSLYSEMLSKGIRPTVVTYNT 343
           CK ++   I+ A++L+  M+ KG  P VVTY+ 
Sbjct: 444 CKARQEGRIKEAITLFDAMIEKGRVPDVVTYSA 476



 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 177/331 (53%), Gaps = 11/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N L   LA+ +     L LF  +   G  P++ TYNILI+   K  RV+  F +
Sbjct: 256 PDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFEL 315

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    PDA+T+T  I GLC   R+ +A  +   +   GC PDV ++  +INGLC+
Sbjct: 316 FSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCK 375

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                 A  L   M A G       C P+AI+++T+  G C+ G   KA   F +M    
Sbjct: 376 EKRVDEAEVLLSGMEAKG-------CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRG 428

Query: 194 INPDVVTYTSLIRGFCYANDW---NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           + P VVTY  L+ G C A       EA  LF  M+++G  P+VVT++ +++ L K GK+D
Sbjct: 429 VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLD 488

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           +A RLL  M   G  P+   YN+L+ G C   +V+ A ELFV+M   GC+ D  +YG +I
Sbjct: 489 DARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTII 548

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  CK + ++ AL+L+   L  G+ PT   Y
Sbjct: 549 SALCKQEMVDKALALFDGSLEAGVVPTSGMY 579



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 186/342 (54%), Gaps = 13/342 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D ++R++   P   +  IL   L K+   +      ++L   GL  D+ T+NI I+  
Sbjct: 4   VYDKLVRIYS--PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGL 60

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  R+     V   + +  F P+ +T+ +L+ GLC   R+ +A AL+ ++   G  PDV
Sbjct: 61  CRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDV 120

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY TL++G C+ G    AL +F    +G  + G V  PD +TY+ + +G CK   +D+A
Sbjct: 121 VTYNTLLHGFCKVGKLDEALKIF----DGAVKRGFV--PDVVTYNALINGFCKADKLDEA 174

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +  +M  E++ PDVVTY SL+ G C     +EA+ L +   D+G  PNV+T++ +++ 
Sbjct: 175 QRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISG 231

Query: 243 LCKN-GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           LC+   +++ A +LLE M+  G +PD   YN L+ G      V+ A +LF S+   G   
Sbjct: 232 LCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEP 291

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +V +Y ILI+G  K   +  A  L+S ++  G+ P  +TY  
Sbjct: 292 EVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 333



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 166/326 (50%), Gaps = 10/326 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  +LR     P V ++NIL   L K    +    LF  L   GL PD  TY + I+  
Sbjct: 280 LFGSVLR-QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGL 338

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GRV    ++L  +      PD V+  ++I GLC E R+ EA  L + + A GC P+ 
Sbjct: 339 CKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNA 398

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK---EGFV 179
            ++ TLI G CR G    A+  F+EM     + GV  KP  +TY+ + DGLCK   EG +
Sbjct: 399 ISFNTLICGQCRAGKWKKAMTTFKEML----KRGV--KPTVVTYNILVDGLCKARQEGRI 452

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            +A  LF  M ++   PDVVTY++LI G   A   ++A+ L   M  +G  PNV T+N +
Sbjct: 453 KEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSL 512

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LC   K+DEA  L   M++ G  PD   Y T++   C    V++A  LF      G 
Sbjct: 513 ISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGV 572

Query: 300 MRDVFSYGILINGYCKNKEIEGALSL 325
           +     Y  LI+G C    ++ AL L
Sbjct: 573 VPTSGMYFSLIDGLCAVARVDEALKL 598



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 1/144 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+      P V +++ L   L K    D    L   + + G  P++YTYN LI+  
Sbjct: 458 LFDAMIE-KGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGL 516

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C + +V     +   ++     PD +T+ ++I  LC +  + +A ALF      G  P  
Sbjct: 517 CGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTS 576

Query: 123 FTYTTLINGLCRTGHTIVALNLFE 146
             Y +LI+GLC       AL L +
Sbjct: 577 GMYFSLIDGLCAVARVDEALKLLQ 600


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 191/345 (55%), Gaps = 41/345 (11%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL-FPDLYTYNILINCF 62
           F  ML ++P P  +  FN+LFG +AK++H+ T +SL K L+S+G    D+ T NILINC 
Sbjct: 64  FHRMLTLNPFPC-IQDFNLLFGIVAKSQHFATAISLIKTLHSLGYEIADVCTLNILINCL 122

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++ + + GF VLG + +    P  VT  ++  GLC                        
Sbjct: 123 CRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIANGLC------------------------ 158

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
                ++NGLC+ G T  AL   ++M   N E      P+ + Y+ I DGLCK G V +A
Sbjct: 159 -----IVNGLCKIGDTSGALESLKKMVKRNLE------PNVVVYNAILDGLCKRGLVGEA 207

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFC-YANDWNEAKCLFIEMM-DQGVQPNVVTFNVIM 240
             LF +M   N+ P+VVTY  LI+G C     W E   LF EM+ ++G+ P+V TF++++
Sbjct: 208 LGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFSILV 267

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--ESNG 298
           N  CK G +  A  ++  MI+IGV  +   YN+L+ G+CL  R+  A  +F  M  E  G
Sbjct: 268 NGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEG 327

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C+  V +Y  LI+G+CK K++  A+SL SEM+ KG+ P V T+ +
Sbjct: 328 CLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTS 372



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 162/331 (48%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC-KMGRVSPGFV 73
           P V  +N +   L K       L LF  +  + + P++ TYN LI   C ++G    G  
Sbjct: 186 PNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVG 245

Query: 74  VLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           +   ++      PD  TF+ L+ G C E  ++ A ++   +   G + +V TY +LI+G 
Sbjct: 246 LFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGY 305

Query: 133 CRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           C       A+ +F+ M   G G     C P  +TY+++  G CK   V+KA  L  +M  
Sbjct: 306 CLRNRMEEAVRVFDLMVREGEG-----CLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVG 360

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + ++PDV T+TSLI GF        AK LFI M DQG  P + T  V+++ L K     E
Sbjct: 361 KGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSE 420

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  L   M + G+  D  +YN ++DG C  G++N A++L   +   G   D +++ I+I 
Sbjct: 421 AMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIK 480

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G C+   ++ A  L  +M   G  P   +YN
Sbjct: 481 GLCREGLLDDAEELLRKMKENGCPPNKCSYN 511



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 170/325 (52%), Gaps = 14/325 (4%)

Query: 15  PPVCSFNILF-GCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P V ++N L  G   +   +   + LF  +    G+ PD+ T++IL+N FCK G +    
Sbjct: 221 PNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRAE 280

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLIN 130
            ++G ++R     + VT+ SLI G C  +R+ EA  +F  +     GC P V TY +LI+
Sbjct: 281 SMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIH 340

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G C+      A++L  EM  G G       PD  T++++  G  + G    AKELF+ MK
Sbjct: 341 GWCKVKKVNKAMSLLSEMV-GKG-----LDPDVFTWTSLIGGFFEVGKPLAAKELFITMK 394

Query: 191 DENINPDVVTYTSLIRGF--CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           D+   P + T   ++ G   C+ +  +EA  LF  M   G+  ++V +N++++ +CK GK
Sbjct: 395 DQGQVPILQTCAVVLDGLYKCWLD--SEAMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGK 452

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +++A +LL  ++  G++ D+  +N ++ G C  G ++ A+EL   M+ NGC  +  SY +
Sbjct: 453 LNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNV 512

Query: 309 LINGYCKNKEIEGALSLYSEMLSKG 333
            + G  +  +I  +      M  KG
Sbjct: 513 FVQGLLRKYDISRSRKYLQIMKDKG 537



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 126/323 (39%), Gaps = 68/323 (21%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M+      P V +F+IL     K        S+   +  IG+  ++ TYN LI+ +
Sbjct: 246 LFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGY 305

Query: 63  CKMGRVSPGFVVLGRILRS---CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           C   R+     V   ++R    C  P  VT+ SLI G C   ++ +A +L +++   G  
Sbjct: 306 CLRNRMEEAVRVFDLMVREGEGCL-PSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLD 364

Query: 120 PDVFTYTTLINGLCRTGHTIV-----------------------------------ALNL 144
           PDVFT+T+LI G    G  +                                    A+ L
Sbjct: 365 PDVFTWTSLIGGFFEVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTL 424

Query: 145 FEEMANGNGEFGVVC-----------------------------KPDAITYSTITDGLCK 175
           F  M     +  +V                              K D+ T++ +  GLC+
Sbjct: 425 FRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCR 484

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           EG +D A+EL  KMK+    P+  +Y   ++G     D + ++     M D+G   +  T
Sbjct: 485 EGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGFPVDATT 544

Query: 236 FNVIMNELCKNGKMDEASRLLEL 258
             +++  L  N + +     L++
Sbjct: 545 AELLIRFLSANEEDNAFQEFLQI 567


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 185/362 (51%), Gaps = 41/362 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTY--------------------- 55
           V +FNIL   L K       + + + + S GL PD  T+                     
Sbjct: 203 VSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKE 262

Query: 56  --------------NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101
                         N+LIN FCK GR+      +   +   F PD  T+ +L+ GLC   
Sbjct: 263 QMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIG 322

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
               A  +   +   G  PD++TY +LI+GLC+ G    A+ + ++M + +      C P
Sbjct: 323 HAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRD------CSP 376

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           +A+TY+ I   LCKE  VD+A E+   +  + I PDV T+ SLI+G C +++   A  LF
Sbjct: 377 NAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLF 436

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            EM  +G +P+  T+N++++ LC + K++EA  LL+ M   G   +  +YNTL+DGFC  
Sbjct: 437 EEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKN 496

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            R+  A+E+F  ME  G  RD  +Y  LI+G CK+K +E A  L  +M+ +G+RP   TY
Sbjct: 497 KRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTY 556

Query: 342 NT 343
           N+
Sbjct: 557 NS 558



 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 117/328 (35%), Positives = 187/328 (57%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L K  H    + +   +   GL PD+YTYN LI+  CK+G +     +
Sbjct: 306 PDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKI 365

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++    +P+AVT+ ++I  LC E+R+ EA  +   L + G  PDV T+ +LI GLC 
Sbjct: 366 LDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCL 425

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           + +   A++LFEEM  G G     C+PD  TY+ + D LC    +++A  L  +M+    
Sbjct: 426 SSNHKSAMDLFEEM-KGKG-----CRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGC 479

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +VV Y +LI GFC      EA+ +F EM  QGV  + VT+N +++ LCK+ ++++A++
Sbjct: 480 ARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQ 539

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ MI  G+RPD   YN+L+  FC TG + +A ++  +M S+GC  D+ +Y  LI+G C
Sbjct: 540 LMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLC 599

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ A  L   +  KG+  T   YN
Sbjct: 600 KAGRVQVASRLLRSIQMKGMVLTPHAYN 627



 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 168/329 (51%), Gaps = 8/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K    +  + +  ++ S    P+  TYN +I+  CK  RV     +
Sbjct: 341 PDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEI 400

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD  TF SLI+GLC  S    A  LF +++  GC+PD FTY  LI+ LC 
Sbjct: 401 ARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCS 460

Query: 135 TGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +     ALNL +EM  NG       C  + + Y+T+ DG CK   +++A+E+F +M+ + 
Sbjct: 461 SRKLEEALNLLKEMELNG-------CARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQG 513

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           ++ D VTY +LI G C +    +A  L  +M+ +G++P+  T+N ++   CK G + +A+
Sbjct: 514 VSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAA 573

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +++ M   G  PD   Y TL+ G C  GRV  A  L  S++  G +    +Y  +I   
Sbjct: 574 DIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQAL 633

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            K      A+ L+ EML K   P  +TY 
Sbjct: 634 FKRNRTHEAMRLFREMLDKSEPPDAITYK 662



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 133/268 (49%), Gaps = 11/268 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N+L   L  ++  +  L+L K +   G   ++  YN LI+ FCK  R+     +
Sbjct: 446 PDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEI 505

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     + D+VT+ +LI GLC   R+ +AA L  ++   G +PD FTY +L+   C+
Sbjct: 506 FDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCK 565

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF--LKMKDE 192
           TG    A ++ + M +        C PD +TY+T+  GLCK G V  A  L   ++MK  
Sbjct: 566 TGDIKKAADIVQTMTSSG------CNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGM 619

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG-KMDE 251
            + P    Y  +I+     N  +EA  LF EM+D+   P+ +T+ ++   LC  G  + E
Sbjct: 620 VLTPHA--YNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGE 677

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFC 279
           A      MI+ G  P+ S +  L +G C
Sbjct: 678 AVDFTVEMIERGNIPEFSSFVMLAEGLC 705



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 117/246 (47%), Gaps = 7/246 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N L     KNK  +    +F  +   G+  D  TYN LI+  CK  RV     ++ 
Sbjct: 483 VVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMD 542

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           +++     PD  T+ SL+   C    I +AA +   + + GC PD+ TY TLI+GLC+ G
Sbjct: 543 QMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAG 602

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
              VA  L   +       G+V  P A  Y+ +   L K     +A  LF +M D++  P
Sbjct: 603 RVQVASRLLRSIQMK----GMVLTPHA--YNPVIQALFKRNRTHEAMRLFREMLDKSEPP 656

Query: 197 DVVTYTSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           D +TY  + RG C       EA    +EM+++G  P   +F ++   LC     D   +L
Sbjct: 657 DAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDDTLVKL 716

Query: 256 LELMIQ 261
           ++++++
Sbjct: 717 VDMIME 722



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 6/228 (2%)

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           +  KPD   Y  L+N L       +  +    M           + D  T++ +   LCK
Sbjct: 162 YRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRR------IRHDVSTFNILIKALCK 215

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
              V  A  +  +M    ++PD  T+T++++G+    + + A  +  +M++ G     VT
Sbjct: 216 AHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVT 275

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            NV++N  CK G++D+A   ++  +  G RPD   YNTL++G C  G    A E+  +M 
Sbjct: 276 VNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAML 335

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   D+++Y  LI+G CK  EIE A+ +  +M+S+   P  VTYN 
Sbjct: 336 LGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNA 383



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 7/225 (3%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P    Y  ++  L + G       + EEM     EF      D   +    +   K    
Sbjct: 95  PSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEF------DRGIFLIFVESYGKFELY 148

Query: 180 DKAKELFLKMKDE-NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           D+   +   M+DE  I PD   Y  L+     AN     +     M+ + ++ +V TFN+
Sbjct: 149 DEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNI 208

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++  LCK  ++  A  ++E M   G+ PD + + T+M G+   G ++ A  +   M   G
Sbjct: 209 LIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYG 268

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C     +  +LING+CK   I+ ALS   E +S+G RP   TYNT
Sbjct: 269 CPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNT 313


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 187/346 (54%), Gaps = 14/346 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAK---NKHYDTVLSLFKRLN---SIGLFPDLYTYN 56
           +FD +L     P  V +FN L   +++   +   + V+SLF R+    S  + P+  TY+
Sbjct: 36  LFDELLHC-ARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPNACTYS 94

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA-ALFTKLRA 115
           ILI CFC+MGR+  GF   G IL++ +  + +  + L+KGLC   R+ EA   L  ++  
Sbjct: 95  ILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSE 154

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           FGC PDV  Y T+ING  R G    A NLF EM +          P+ +TY+T+ DGLCK
Sbjct: 155 FGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQG------IPPNVVTYTTVIDGLCK 208

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
              VD+AK +F +M D  + PD  TY  LI G+     W E   +  EM   G++P+ +T
Sbjct: 209 AQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCIT 268

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           + ++++ LCKNG+  EA    + M + G++PD ++Y  L+ G+   G ++        M 
Sbjct: 269 YALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMV 328

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            NG   +   + I+   Y K   IE A+ ++++M  +G+ P VV++
Sbjct: 329 GNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSF 374



 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 188/360 (52%), Gaps = 31/360 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++  +   L K +  D    +F+++   G+ PD  TYN LI+ +   G+      
Sbjct: 193 PPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQ 252

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      PD +T+  L+  LC   R  EA   F  +   G KPDV  Y  L++G  
Sbjct: 253 MLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYA 312

Query: 134 RTGHTIVALNLFEEMANGNGE------FGVV------------------------CKPDA 163
             G  +  ++ F ++  GNG       F ++                          PD 
Sbjct: 313 TKG-ALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDV 371

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +++  + D LCK G VD A   F +M +E + P++  ++SL+ G C    W +A+ LF E
Sbjct: 372 VSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFE 431

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           ++DQG+  + V FN +M  LC  G++ EA RL++LMI++GVRP+   YNTL+ G CLTGR
Sbjct: 432 VLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGR 491

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A +L   M SNG   + F+Y IL+ GYCK + ++ A SL+ EML KG+ P V TYNT
Sbjct: 492 IDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNT 551



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 166/322 (51%), Gaps = 6/322 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FNI+F   AK    +  + +F ++   GL PD+ ++  LI+  CK+GRV    +   +++
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMI 398

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
               TP+   F+SL+ GLC   +  +A  LF ++   G   D   + TL+  LC  G  +
Sbjct: 399 NEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVM 458

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L + M        V  +P+ I+Y+T+  G C  G +D+A +L   M    + P+  
Sbjct: 459 EAQRLIDLMIR------VGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEF 512

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TYT L+RG+C A   ++A  LF EM+ +GV P V T+N I++ L + G+  EA+ L   M
Sbjct: 513 TYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNM 572

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           I    + D   YN +++G C    V+ A ++F  + S     D  ++ I+I    K    
Sbjct: 573 INSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRK 632

Query: 320 EGALSLYSEMLSKGIRPTVVTY 341
           E A+ L++ + + G+ P VVTY
Sbjct: 633 EDAMDLFATISAYGLVPDVVTY 654



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 172/339 (50%), Gaps = 7/339 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M R     P V  + IL    A       + S    +   G+ P+   +NI+   + 
Sbjct: 289 FDSMFR-KGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYA 347

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K   +     +  ++ +   +PD V+F +LI  LC   R+ +A   F ++   G  P++F
Sbjct: 348 KKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIF 407

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            +++L+ GLC  G    A  LF E+ +       +C  DA+ ++T+   LC EG V +A+
Sbjct: 408 VFSSLVYGLCTVGKWEKAEELFFEVLDQG-----IC-VDAVFFNTLMCNLCNEGRVMEAQ 461

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L   M    + P+V++Y +L+ G C     +EA  L   M+  G++PN  T+ +++   
Sbjct: 462 RLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGY 521

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  ++D+A  L   M+  GV P  + YNT++ G   TGR + A EL+++M ++    D+
Sbjct: 522 CKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDI 581

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++Y I++NG CKN  ++ A  ++  + SK  +   VT+N
Sbjct: 582 YTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFN 620



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 137/280 (48%), Gaps = 6/280 (2%)

Query: 46  IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME 105
           +G+ P++ +YN L+   C  GR+     +L  ++ +   P+  T+T L++G C   R+ +
Sbjct: 470 VGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDD 529

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           A +LF ++   G  P V TY T+++GL +TG    A  L+  M N         K D  T
Sbjct: 530 AYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSR------TKCDIYT 583

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ I +GLCK  FVD+A ++F ++  ++   D VT+  +I          +A  LF  + 
Sbjct: 584 YNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATIS 643

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G+ P+VVT+ +I   L + G + E   L   M + G  P++ + N L+      G ++
Sbjct: 644 AYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDIS 703

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           RA      ++      +  +  +LI+ Y + +    A SL
Sbjct: 704 RAGVYLYKLDEKNFSLEASTTSMLISLYSRGEYQPHAKSL 743



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 114/284 (40%), Gaps = 30/284 (10%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R+   P  V S+N L          D    L   + S GL P+ +TY IL+  +
Sbjct: 463 LIDLMIRVGVRPN-VISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGY 521

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  RV   + +   +L    TP   T+ +++ GL    R  EA  L+  +     K D+
Sbjct: 522 CKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDI 581

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEF---------GVVCK------------- 160
           +TY  ++NGLC+      A  +F  + + + +          G + K             
Sbjct: 582 YTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFAT 641

Query: 161 -------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                  PD +TY  I + L +EG + +   LF  M+     P+     +L+R   +  D
Sbjct: 642 ISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGD 701

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + A     ++ ++       T +++++   +      A  L E
Sbjct: 702 ISRAGVYLYKLDEKNFSLEASTTSMLISLYSRGEYQPHAKSLPE 745


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 183/357 (51%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K +  D  + +   +   G+ PD  TYN +++ +C  G+       
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT++ L+  LC   R MEA  +F  +   G KP++ TY TL+ G   
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348

Query: 135 TGHTIVALNLFEEMANGN---------------GEFGVVCK--------------PDAIT 165
            G  +    L + M                    + G V +              P+A+T
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVT 408

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y  +   LCK G V+ A   F +M DE ++P  + Y SLI G C  N W  A+ L +EM+
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D+G+  N + FN I++  CK G++ E+ +L ELM++IGV+P+   YNTL++G+CL G+++
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A +L   M S G   +  +Y  LINGYCK   +E AL L+ EM S G+ P ++TYN
Sbjct: 529 EAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYN 585



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 189/378 (50%), Gaps = 44/378 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + PDL TY ILI
Sbjct: 37  VFDELLR-RGRGASIYGLNRALADVARDSPAAAV-SRYNRMARAGADEVTPDLCTYGILI 94

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
            C C+ GR+  GF  LG +++  F  DA+ FT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 95  GCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGC 154

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF+Y  L+ GLC    +  AL L   MA+  G       PD ++Y+T+ +G  KEG 
Sbjct: 155 IPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGS---PPDVVSYTTVINGFFKEGD 211

Query: 179 VDKAKELFLKMKDENINPDVVTYTSL---------------------------------- 204
            DKA   + +M D  I PDVVTY S+                                  
Sbjct: 212 SDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS 271

Query: 205 -IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
            + G+C +    EA     +M   GV+P+VVT++++M+ LCKNG+  EA ++ + M + G
Sbjct: 272 ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG 331

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           ++P+ + Y TL+ G+   G +     L   M  NG   D + + ILI  Y K  +++ A+
Sbjct: 332 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAM 391

Query: 324 SLYSEMLSKGIRPTVVTY 341
            ++S+M  +G+ P  VTY
Sbjct: 392 LVFSKMRQQGLNPNAVTY 409



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 180/364 (49%), Gaps = 29/364 (7%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R   SPP V S+  +     K    D   S +  +   G+ PD+ TYN +I   CK   +
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                VL  ++++   PD +T+ S++ G C+  +  EA     K+R+ G +PDV TY+ L
Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307

Query: 129 INGLCRTGHTIVALNLFEEMA---------------NGNGEFGVVCK------------- 160
           ++ LC+ G  + A  +F+ M                 G    G + +             
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 367

Query: 161 -PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            PD   +S +     K+G VD+A  +F KM+ + +NP+ VTY ++I   C +    +A  
Sbjct: 368 HPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            F +M+D+G+ P  + +N +++ LC   K + A  L+  M+  G+  +   +N+++D  C
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHC 487

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             GRV  +++LF  M   G   +V +Y  LINGYC   +++ A+ L S M+S G++P  V
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTV 547

Query: 340 TYNT 343
           TY+T
Sbjct: 548 TYST 551



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 174/340 (51%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M +     P + ++  L    A       +  L   +   G+ PD Y ++ILI  +
Sbjct: 323 IFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G+V    +V  ++ +    P+AVT+ ++I  LC   R+ +A   F ++   G  P  
Sbjct: 382 AKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y +LI+GLC       A  L  EM +       +C  + I +++I D  CKEG V ++
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRG-----IC-LNTIFFNSIIDSHCKEGRVIES 495

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++LF  M    + P+V+TY +LI G+C A   +EA  L   M+  G++PN VT++ ++N 
Sbjct: 496 EKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLING 555

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK  +M++A  L + M   GV PD   YN ++ G   T R   AKEL+V +  +G   +
Sbjct: 556 YCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIE 615

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +Y I+++G CKNK  + AL ++  +    ++    T+N
Sbjct: 616 LSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFN 655



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 46/368 (12%)

Query: 3   IFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + D M+R  +HP       F+IL    AK    D  + +F ++   GL P+  TY  +I 
Sbjct: 358 LLDLMVRNGIHPDH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIG 414

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA--------------------- 99
             CK GRV    +   +++    +P  + + SLI GLC                      
Sbjct: 415 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 474

Query: 100 --------------ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
                         E R++E+  LF  +   G KP+V TY TLING C  G    A+ L 
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
             M +      V  KP+ +TYST+ +G CK   ++ A  LF +M+   ++PD++TY  ++
Sbjct: 535 SGMVS------VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
           +G         AK L++ + + G Q  + T+N+I++ LCKN   D+A ++ + +  + ++
Sbjct: 589 QGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLK 648

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
            +A  +N ++D     GR + AK+LFV+  SNG + + ++Y ++         +E    L
Sbjct: 649 LEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQL 708

Query: 326 YSEMLSKG 333
           +  M   G
Sbjct: 709 FLSMEDNG 716



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 7/274 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M+R+    P V ++N L          D  + L   + S+GL P+  TY+ LIN +
Sbjct: 498 LFELMVRI-GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGY 556

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+ R+    V+   +  S  +PD +T+  +++GL    R   A  L+ ++   G + ++
Sbjct: 557 CKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIEL 616

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +++GLC+   T  AL +F+ +   +       K +A T++ + D L K G  D+A
Sbjct: 617 STYNIILHGLCKNKLTDDALQMFQNLCLMD------LKLEARTFNIMIDALLKVGRNDEA 670

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K+LF+      + P+  TY  +           E   LF+ M D G   +    N I+ E
Sbjct: 671 KDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRE 730

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           L + G++  A   L ++ +     +AS  +  +D
Sbjct: 731 LLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 4/156 (2%)

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + + PD+ TY  LI   C A   +        ++ +G + + + F  ++  LC + +  +
Sbjct: 81  DEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD 140

Query: 252 ASRL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN---GCMRDVFSYG 307
           A  + L  M ++G  P+   YN L+ G C   R   A EL   M  +   G   DV SY 
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT 200

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +ING+ K  + + A S Y EML +GI P VVTYN+
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNS 236


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 185/358 (51%), Gaps = 31/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K +  D  + +   +   G+ PD  TYN +++ +C  G+       
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT++ L+  LC   R MEA  +F  +   G KP++ TY TL+ G   
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348

Query: 135 TGHTIVALNLFEEMANGNG------EFGV-VC-----------------------KPDAI 164
            G  +    L + M   NG       F + +C                        P+A+
Sbjct: 349 KGALVEMHGLLDLMVR-NGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAV 407

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY  +   LCK G V+ A   F +M DE ++P  + Y SLI G C  N W  A+ L +EM
Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 467

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +D+G+  N + FN I++  CK G++ E+ +L ELM++IGV+P+   YNTL++G+CL G++
Sbjct: 468 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM 527

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + A +L   M S G   +  +Y  LINGYCK   +E AL L+ EM S G+ P ++TYN
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYN 585



 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/378 (31%), Positives = 188/378 (49%), Gaps = 44/378 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + PDL TY ILI
Sbjct: 37  VFDELLR-RGRGASIYGLNRALADVARDSPAAAV-SRYNRMARAGADEVTPDLCTYGILI 94

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
            C C+ GR+  GF  LG +++  F  DA+ FT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 95  GCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGC 154

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF+Y  L+ GLC    +  AL L   MA+  G       PD ++Y+T+ +G  KEG 
Sbjct: 155 IPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGS---PPDVVSYTTVINGFFKEGD 211

Query: 179 VDKAKELFLKMKDENINPDVVTYTSL---------------------------------- 204
            DKA   + +M D  I PDVVTY S+                                  
Sbjct: 212 SDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS 271

Query: 205 -IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
            + G+C +    EA     +M   GV+P+VVT++++M+ LCKNG+  EA ++ + M + G
Sbjct: 272 ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG 331

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           ++P+ + Y TL+ G+   G +     L   M  NG   D + + ILI  Y    +++ A+
Sbjct: 332 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAM 391

Query: 324 SLYSEMLSKGIRPTVVTY 341
            ++S+M  +G+ P  VTY
Sbjct: 392 LVFSKMRQQGLNPNAVTY 409



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 179/364 (49%), Gaps = 29/364 (7%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R   SPP V S+  +     K    D   S +  +   G+ PD+ TYN +I   CK   +
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                VL  ++++   PD +T+ S++ G C+  +  EA     K+R+ G +PDV TY+ L
Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307

Query: 129 INGLCRTGHTIVALNLFEEMA---------------NGNGEFGVVCK------------- 160
           ++ LC+ G  + A  +F+ M                 G    G + +             
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 367

Query: 161 -PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            PD   +S +      +G VD+A  +F KM+ + +NP+ VTY ++I   C +    +A  
Sbjct: 368 HPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            F +M+D+G+ P  + +N +++ LC   K + A  L+  M+  G+  +   +N+++D  C
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHC 487

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             GRV  +++LF  M   G   +V +Y  LINGYC   +++ A+ L S M+S G++P  V
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTV 547

Query: 340 TYNT 343
           TY+T
Sbjct: 548 TYST 551



 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 173/340 (50%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M +     P + ++  L    A       +  L   +   G+ PD Y ++ILI  +
Sbjct: 323 IFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAY 381

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G+V    +V  ++ +    P+AVT+ ++I  LC   R+ +A   F ++   G  P  
Sbjct: 382 ANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y +LI+GLC       A  L  EM +       +C  + I +++I D  CKEG V ++
Sbjct: 442 IVYNSLIHGLCTCNKWERAEELILEMLDRG-----IC-LNTIFFNSIIDSHCKEGRVIES 495

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++LF  M    + P+V+TY +LI G+C A   +EA  L   M+  G++PN VT++ ++N 
Sbjct: 496 EKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLING 555

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK  +M++A  L + M   GV PD   YN ++ G   T R   AKEL+V +  +G   +
Sbjct: 556 YCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIE 615

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +Y I+++G CKNK  + AL ++  +    ++    T+N
Sbjct: 616 LSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFN 655



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 170/366 (46%), Gaps = 42/366 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R    P     F+IL    A     D  + +F ++   GL P+  TY  +I   
Sbjct: 358 LLDLMVRNGIHPDHYV-FSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA----------------------- 99
           CK GRV    +   +++    +P  + + SLI GLC                        
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 476

Query: 100 ------------ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
                       E R++E+  LF  +   G KP+V TY TLING C  G    A+ L   
Sbjct: 477 IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M +      V  KP+ +TYST+ +G CK   ++ A  LF +M+   ++PD++TY  +++G
Sbjct: 537 MVS------VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQG 590

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
                    AK L++ + + G Q  + T+N+I++ LCKN   D+A ++ + +  + ++ +
Sbjct: 591 LFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLE 650

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
           A  +N ++D     GR + AK+LFV+  SNG + + ++Y ++         +E    L+ 
Sbjct: 651 ARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFL 710

Query: 328 EMLSKG 333
            M   G
Sbjct: 711 SMEDNG 716



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 11/276 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG--CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           +F+ M+R+    P V ++N L    CLA     D  + L   + S+GL P+  TY+ LIN
Sbjct: 498 LFELMVRI-GVKPNVITYNTLINGYCLAGK--MDEAMKLLSGMVSVGLKPNTVTYSTLIN 554

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK+ R+    V+   +  S  +PD +T+  +++GL    R   A  L+ ++   G + 
Sbjct: 555 GYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI 614

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY  +++GLC+   T  AL +F+ +   +       K +A T++ + D L K G  D
Sbjct: 615 ELSTYNIILHGLCKNKLTDDALQMFQNLCLMD------LKLEARTFNIMIDALLKVGRND 668

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AK+LF+      + P+  TY  +           E   LF+ M D G   +    N I+
Sbjct: 669 EAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 728

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
            EL + G++  A   L ++ +     +AS  +  +D
Sbjct: 729 RELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 4/156 (2%)

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + + PD+ TY  LI   C A   +        ++ +G + + + F  ++  LC + +  +
Sbjct: 81  DEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD 140

Query: 252 ASRL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN---GCMRDVFSYG 307
           A  + L  M ++G  P+   YN L+ G C   R   A EL   M  +   G   DV SY 
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT 200

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +ING+ K  + + A S Y EML +GI P VVTYN+
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNS 236


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 182/339 (53%), Gaps = 14/339 (4%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R  PSP  +    I+ G   KN   D  L   K +N   + PD++TYNILI+  CK  
Sbjct: 217 IFRNIPSPDAIAYNAIIHGHCRKND-CDGALEFLKEMNERKVAPDVFTYNILIDGLCKAS 275

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +      +L  ++    TPD VTF S++ GLC   +   A +L   +    C+P   TY 
Sbjct: 276 KTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYN 335

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLI+GLC+  +   A +L +E  +     G V  PD +TYS + DGLCK G +D+A EL 
Sbjct: 336 TLISGLCKQQNVDRAKDLVDEFVSS----GFV--PDVVTYSILADGLCKRGRIDEAFELV 389

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +   P++VTY +LI G C A+   +A  L   ++  G  P+VVT+ +I++ LCK 
Sbjct: 390 KEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKE 449

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G++D+A +++E M++ G  P    Y  LM+G C TGRV+ A  +F  M S  C  D  +Y
Sbjct: 450 GRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAY 509

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIR--PTVVTYNT 343
             L+NGYCK+   + A     + +  GIR  P +  YN 
Sbjct: 510 VSLVNGYCKSSRTKEA-----QKVVDGIRGTPYIDVYNA 543



 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 179/339 (52%), Gaps = 11/339 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ ML    +P    +++++   L +    D   ++  +    G  P++  Y IL   F
Sbjct: 147 MFERMLDAGYAPDSY-TYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAF 205

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR+         I R+  +PDA+ + ++I G C ++    A     ++      PDV
Sbjct: 206 CKTGRLKDAL----EIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDV 261

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FTY  LI+GLC+   T  A  +  EM +     GV   PD +T+++I DGLCK G  ++A
Sbjct: 262 FTYNILIDGLCKASKTDKASEMLHEMVDR----GVT--PDTVTFNSIMDGLCKAGKFERA 315

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M + N  P   TY +LI G C   + + AK L  E +  G  P+VVT++++ + 
Sbjct: 316 HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADG 375

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G++DEA  L++ M   G  P+   YNTL+DG C   +  +A EL  S+ S+G + D
Sbjct: 376 LCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPD 435

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           V +Y I+++G CK   ++ AL +   ML +G  P+V+TY
Sbjct: 436 VVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITY 474



 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 173/329 (52%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++IL   L K    D    L K ++  G  P+L TYN LI+  CK  +    + +
Sbjct: 364 PDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYEL 423

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ S F PD VT+T ++ GLC E R+ +A  +   +   GC P V TYT L+ GLCR
Sbjct: 424 LESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCR 483

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    A ++F+EM + +      C  DA+ Y ++ +G CK     +A+++   ++    
Sbjct: 484 TGRVDEAHHIFKEMVSKD------CTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG--- 534

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +  Y +L+ G+C     +E   +F +M  +G  PN+ T+N++M+ LCK+GK+DEA  
Sbjct: 535 TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 594

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            LE M   G  PD   YN ++DG     +   A+++   M   G   D  +Y  L+  +C
Sbjct: 595 FLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFC 654

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K +  + A+ +   M+  G+ P  VTYNT
Sbjct: 655 KEERFDDAVGILKNMIKAGVDPDNVTYNT 683



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/317 (35%), Positives = 161/317 (50%), Gaps = 10/317 (3%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L + K   T +  F      G     +T N  +    + G       +  R+L + + PD
Sbjct: 100 LQRLKDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPD 159

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
           + T+  +IK LC  ++I +A  +  K +  G KP+V  YT L    C+TG    AL +F 
Sbjct: 160 SYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFR 219

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
            + +          PDAI Y+ I  G C++   D A E   +M +  + PDV TY  LI 
Sbjct: 220 NIPS----------PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILID 269

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C A+  ++A  +  EM+D+GV P+ VTFN IM+ LCK GK + A  LL +M +   RP
Sbjct: 270 GLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRP 329

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
               YNTL+ G C    V+RAK+L     S+G + DV +Y IL +G CK   I+ A  L 
Sbjct: 330 SCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELV 389

Query: 327 SEMLSKGIRPTVVTYNT 343
            EM  KG  P +VTYNT
Sbjct: 390 KEMSGKGCTPNLVTYNT 406



 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 177/355 (49%), Gaps = 27/355 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K    +    L + L S G  PD+ TY I+++  CK GR+     +
Sbjct: 399 PNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKM 458

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L+   TP  +T+T+L++GLC   R+ EA  +F ++ +  C  D   Y +L+NG C+
Sbjct: 459 VEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCK 518

Query: 135 TGHTIVA------------LNLFEEMANGNGEFGVV--------------CKPDAITYST 168
           +  T  A            ++++  + +G  + G +              C P+  TY+ 
Sbjct: 519 SSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNI 578

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           + DGLCK G VD+A      M      PDVV+Y  +I G   A+   EA+ +  +M+  G
Sbjct: 579 VMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAG 638

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           + P+ VT+N +M + CK  + D+A  +L+ MI+ GV PD   YNTL+ G   T R+  A 
Sbjct: 639 IPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAY 698

Query: 289 ELFVSMESNGCMRDV-FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           EL   M  NGC+     +Y  +I+  CK   ++ AL L   M   G+    VTYN
Sbjct: 699 ELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYN 753



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 160/328 (48%), Gaps = 9/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NI+   L K+   D      + ++S G  PD+ +YNI+I+   K  +      V
Sbjct: 571 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQV 630

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++++   PDAVT+ +L+   C E R  +A  +   +   G  PD  TY TLI+GL +
Sbjct: 631 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 690

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A  L  EM   NG     C     TY+TI D LCKEG + +A  L   M    +
Sbjct: 691 TNRLGDAYELMHEMLR-NGCVVSAC----TTYNTIIDRLCKEGCLKQALLLMDHMTGHGV 745

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VTY   I   C     +EA  L  EM       + V++  ++  LCK  ++D AS+
Sbjct: 746 EANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASK 802

Query: 255 LLELMIQI-GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           L   M+ + G+   +  +N L+D F  T R++ A  L   M   GC   V +Y ++I   
Sbjct: 803 LAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCL 862

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           CK  +++ A  L+ EM  +GI  + V+Y
Sbjct: 863 CKLDKVDKAWELFDEMAVRGIVASSVSY 890



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 166/332 (50%), Gaps = 13/332 (3%)

Query: 4   FDYMLRMHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           F ++  MH +   P V S+NI+   L K         +  ++   G+ PD  TYN L+  
Sbjct: 593 FPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQ 652

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FCK  R      +L  ++++   PD VT+ +LI GL   +R+ +A  L  ++   GC   
Sbjct: 653 FCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVS 712

Query: 122 V-FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
              TY T+I+ LC+ G    AL L + M  G+G      + + +TY+   D LCKEG +D
Sbjct: 713 ACTTYNTIIDRLCKEGCLKQALLLMDHM-TGHG-----VEANTVTYNIFIDRLCKEGRLD 766

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD-QGVQPNVVTFNVI 239
           +A  L  +M   +   D V+YT++I G C A   + A  L  EM+  +G+     TFN++
Sbjct: 767 EASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLL 823

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++   K  ++DEA  LL LM+Q G  P    YN ++   C   +V++A ELF  M   G 
Sbjct: 824 IDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGI 883

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           +    SY +LI G C     + AL +  EM S
Sbjct: 884 VASSVSYTVLIYGLCGQGRGKEALQVLEEMAS 915



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 164/330 (49%), Gaps = 11/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L     K    D + ++F+ +   G  P++ TYNI+++  CK G+V   F  
Sbjct: 536 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 595

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   PD V++  +I GL   S+  EA  +  ++   G  PD  TY TL+   C+
Sbjct: 596 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 655

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDEN 193
                 A+ + + M       GV   PD +TY+T+  GL +   +  A EL  +M ++  
Sbjct: 656 EERFDDAVGILKNMIKA----GV--DPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGC 709

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +     TY ++I   C      +A  L   M   GV+ N VT+N+ ++ LCK G++DEAS
Sbjct: 710 VVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEAS 769

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-NGCMRDVFSYGILING 312
            LL  M  +    D   Y T++ G C   +++RA +L   M +  G      ++ +LI+ 
Sbjct: 770 SLLSEMDTL---RDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDA 826

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + K K ++ AL+L   M+ +G  P+V+TYN
Sbjct: 827 FTKTKRLDEALTLLGLMVQRGCSPSVITYN 856



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 45/293 (15%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI--- 59
           + D M++    PP   ++N L     K + +D  + + K +   G+ PD  TYN LI   
Sbjct: 630 VLDQMIQAG-IPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGL 688

Query: 60  ---------------------------------NCFCKMGRVSPGFVVLGRILRSCFTPD 86
                                            +  CK G +    +++  +       +
Sbjct: 689 SQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEAN 748

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            VT+   I  LC E R+ EA++L +++       D  +YTT+I GLC+      A  L  
Sbjct: 749 TVTYNIFIDRLCKEGRLDEASSLLSEMDTL---RDEVSYTTVIIGLCKAEQLDRASKLAR 805

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM    G    +C   + T++ + D   K   +D+A  L   M     +P V+TY  +I 
Sbjct: 806 EMVAVKG----LCIT-SHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVIT 860

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
             C  +  ++A  LF EM  +G+  + V++ V++  LC  G+  EA ++LE M
Sbjct: 861 CLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 913



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 3/163 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSI-GLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           S+  +   L K +  D    L + + ++ GL    +T+N+LI+ F K  R+     +LG 
Sbjct: 783 SYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGL 842

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           +++   +P  +T+  +I  LC   ++ +A  LF ++   G      +YT LI GLC  G 
Sbjct: 843 MVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGR 902

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYS--TITDGLCKEGF 178
              AL + EEMA+ + E   +   D   +S    T G C   F
Sbjct: 903 GKEALQVLEEMASSDCEIDDLKWEDVAPHSQFQTTFGPCYSSF 945


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/327 (35%), Positives = 184/327 (56%), Gaps = 7/327 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V SFNIL   L +    +T L  F++++     P++ TY++LI+  CK  RVS    +L 
Sbjct: 79  VISFNILVTGLCRAGKIETALEFFRKMDD-RCSPNVITYSVLIDGLCKANRVSQAVELLE 137

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +     +PD +T+T L+ GLC ES++  A  +  ++   GC P++ TY +L++GLCR  
Sbjct: 138 SMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRAR 197

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL L  +M          C P+ +TY T+ DGLCK G V  A  +   M D+   P
Sbjct: 198 RVSDALALMRDMTCRG------CTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTP 251

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D++ Y  LI G C A+  +E+  L    +  G++P+VVT++ ++  LC++ ++DEA RLL
Sbjct: 252 DLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLL 311

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             +   G  PD  +Y+TL+DG C  G+V+ A +L+  M  +GC  DV +Y  LI+G CK 
Sbjct: 312 LYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKA 371

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++ A  L + M+  G  P+ +TYN+
Sbjct: 372 GRVDEAHLLLARMVRMGTPPSTMTYNS 398



 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 174/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++++L   L K       + L + + + G  PD+ TY IL++  CK  +V+  + V
Sbjct: 111 PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEV 170

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L +   P+ VT+ SL+ GLC   R+ +A AL   +   GC P+V TY TLI+GLC+
Sbjct: 171 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 230

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +  +M +  G       PD + Y+ + +GLCK   VD++  L  +     I
Sbjct: 231 VGRVKDACAMLADMIDKGG------TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI 284

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY+S+I G C +N  +EA  L + +  +G  P+V+ ++ +++ LCK GK+DEA  
Sbjct: 285 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 344

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E+M   G   D   Y+TL+DG C  GRV+ A  L   M   G      +Y  LI G C
Sbjct: 345 LYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLC 404

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               ++ A+ L  EM      P+ VTYN
Sbjct: 405 DLNHLDEAIELVEEMERSNCAPSAVTYN 432



 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 169/323 (52%), Gaps = 8/323 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L + +     L+L + +   G  P++ TY  LI+  CK+GRV     +
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 240

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++    TPD + +  LI GLC   ++ E+ AL  +  + G KPDV TY+++I GLCR
Sbjct: 241 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 300

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A  L   + +        C PD I YST+ DGLCK G VD+A +L+  M  +  
Sbjct: 301 SNRLDEACRLLLYVKSRG------CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGC 354

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + DVVTY++LI G C A   +EA  L   M+  G  P+ +T+N ++  LC    +DEA  
Sbjct: 355 DADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIE 414

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK-ELFVSMESNGCMRDVFSYGILINGY 313
           L+E M +    P A  YN L+ G C   RV+ A  + F  M  NG + D  +Y IL+ G 
Sbjct: 415 LVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGL 474

Query: 314 CKNKEIEGALSL-YSEMLSKGIR 335
            K+K++     L   +M+  G R
Sbjct: 475 KKSKDLHELRHLVLDQMVQLGYR 497



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 149/286 (52%), Gaps = 27/286 (9%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
           P+ VT+ SLI GLC  +    A  LF  +++  C P + TY TL++GL RTG    A+ L
Sbjct: 8   PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 67

Query: 145 FEEMANGNGE----FGVV-----------------------CKPDAITYSTITDGLCKEG 177
           F+EM +        F ++                       C P+ ITYS + DGLCK  
Sbjct: 68  FQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKAN 127

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            V +A EL   MK    +PDV+TYT L+ G C  +    A  +  EM+D G  PN+VT+N
Sbjct: 128 RVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYN 187

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +++ LC+  ++ +A  L+  M   G  P+   Y TL+DG C  GRV  A  +   M   
Sbjct: 188 SLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDK 247

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   D+  Y +LING CK  +++ +++L    +S GI+P VVTY++
Sbjct: 248 GGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSS 293



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/187 (38%), Positives = 112/187 (59%), Gaps = 6/187 (3%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C+P+ +TY+++ DGLCK    D+A+ELF  MK    +P +VTY +L+ G         A 
Sbjct: 6   CEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAM 65

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR--PDASVYNTLMD 276
            LF EM+D+    +V++FN+++  LC+ GK++ A   LE   ++  R  P+   Y+ L+D
Sbjct: 66  ALFQEMLDRRSH-DVISFNILVTGLCRAGKIETA---LEFFRKMDDRCSPNVITYSVLID 121

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C   RV++A EL  SM++ GC  DV +Y IL++G CK  ++  A  +  EML  G  P
Sbjct: 122 GLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVP 181

Query: 337 TVVTYNT 343
            +VTYN+
Sbjct: 182 NLVTYNS 188



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 7/175 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V  ++ L   L K    D    L++ +   G   D+ TY+ LI+  CK GRV    +
Sbjct: 320 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHL 379

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R++R    P  +T+ SLIKGLC  + + EA  L  ++    C P   TY  LI+G+C
Sbjct: 380 LLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMC 439

Query: 134 RTGHT-IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           R       AL+ F+EM +     GV+  PD ITYS + +GL K   + + + L L
Sbjct: 440 RMERVDSAALDYFQEMIDN----GVI--PDHITYSILLEGLKKSKDLHELRHLVL 488



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M D G +PNVVT+N +++ LCKN + D A  L E M  +   P    YNTL+DG   TG+
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + RA  LF  M       DV S+ IL+ G C+  +IE AL  + +M  +   P V+TY+
Sbjct: 61  LERAMALFQEMLDRRS-HDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYS 117



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+RM  +PP   ++N L   L    H D  + L + +      P   TYNILI+  C+M 
Sbjct: 384 MVRM-GTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRME 442

Query: 67  RV-SPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           RV S        ++ +   PD +T++ L++GL
Sbjct: 443 RVDSAALDYFQEMIDNGVIPDHITYSILLEGL 474



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M  +GC  +V +Y  LI+G CKN E + A  L+  M S    P++VTYNT
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNT 50


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 187/336 (55%), Gaps = 7/336 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M   HP  P +  F+ L   +AK   Y+ V+SLF+ L  +G+  DLY++  LI+CFC+  
Sbjct: 70  MAESHP-LPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCA 128

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R+S     LG++++  F P  VTF SL+ G C  +R  EA +L  ++   G +P+V  Y 
Sbjct: 129 RLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYN 188

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           T+I+ LC  G    AL++ + M     + G+  +PD +TY+++   L   G    +  + 
Sbjct: 189 TIIDSLCEKGQVNTALDVLKHMK----KMGI--RPDVVTYNSLITRLFHSGTWGVSARIL 242

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M    I+PDV+T+++LI  +       EAK  + EM+ + V PN+VT+N ++N LC +
Sbjct: 243 SDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIH 302

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +DEA ++L +++  G  P+A  YNTL++G+C   RV+   ++   M  +G   D F+Y
Sbjct: 303 GLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTY 362

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             L  GYC+  +   A  +   M+S G+ P + T+N
Sbjct: 363 NTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFN 398



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 7/323 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L +    +T L + K +  +G+ PD+ TYN LI      G       +
Sbjct: 182 PNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARI 241

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R   +PD +TF++LI     E +++EA   + ++      P++ TY +LINGLC 
Sbjct: 242 LSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCI 301

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +   + +  G F     P+A+TY+T+ +G CK   VD   ++   M  + +
Sbjct: 302 HGLLDEAKKVLNVLVS-KGFF-----PNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGV 355

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + D  TY +L +G+C A  ++ A+ +   M+  GV P++ TFN++++ LC +GK+ +A  
Sbjct: 356 DGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALV 415

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            LE + +         YN ++ G C   +V  A  LF S+   G   DV +Y  ++ G  
Sbjct: 416 RLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLR 475

Query: 315 KNKEIEGALSLYSEMLSK-GIRP 336
           + +    A  LY +M  + G+ P
Sbjct: 476 RKRLWREAHELYRKMQKEDGLMP 498



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y   +R   ++  +N+A  LF +M +    P++V F+ ++  + K  K +    L   + 
Sbjct: 47  YRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLE 106

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
            +G+  D   + TL+D FC   R++ A      M   G    + ++G L+NG+C      
Sbjct: 107 MLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFY 166

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A+SL  +++  G  P VV YNT
Sbjct: 167 EAMSLVDQIVGLGYEPNVVIYNT 189


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 184/357 (51%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K +  D  + +   +   G+ P+  TYN +++ +C  G+       
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT+ SL+  LC   R  EA  +F  +   G KP++ TY TL+ G   
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 135 TGHTIVALNLFEEMANGN---------------GEFGVVCK--------------PDAIT 165
            G  +    L + M                    + G V +              PD +T
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y T+   LCK G V+ A   F +M DE ++P  + Y SLI   C  + W++AK L +EM+
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D+G+  + + FN I++  CK G++ E+ +L +LM++IGV+PD   Y+TL+DG+CL G+++
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 531

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A +L  SM S G   D  +Y  LINGYCK   +E AL L+ EM S G+ P ++TYN
Sbjct: 532 EATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588



 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 191/380 (50%), Gaps = 45/380 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P+L TY ILI
Sbjct: 41  VFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTYGILI 98

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
              C  GR+  GF  LG +++  F  DA+ FT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 99  GSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGC 158

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF+Y  L+ GLC    +  AL L + M +  G+    C PD ++Y+T+ +G  KEG 
Sbjct: 159 IPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFFKEGD 214

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLI--------------------------------- 205
           +DKA   + +M D  I P+VVTY+S+I                                 
Sbjct: 215 LDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 206 --RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
              G+C +    EA     +M   GV+P+VVT+N +M+ LCKNG+  EA ++ + M + G
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           ++P+ + Y TL+ G+   G +     L   M  NG   + + + ILI  Y K  +++ A+
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            ++S+M  +G+ P  VTY T
Sbjct: 395 LVFSKMRQQGLNPDTVTYGT 414



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 176/339 (51%), Gaps = 8/339 (2%)

Query: 6   YMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           ++ +MH     P V ++N L   L KN        +F  +   GL P++ TY  L+  + 
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA 350

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G +     +L  ++R+   P+   F+ LI     + ++ +A  +F+K+R  G  PD  
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY T+I  LC++G    A+  FE+M +          P  I Y+++   LC     DKAK
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDER------LSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL L+M D  I  D + + S+I   C      E++ LF  M+  GV+P+++T++ +++  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  GKMDEA++LL  M+ +G++PD   YNTL++G+C   R+  A  LF  MES+G   D+
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +Y I++ G  + +    A  LY  +   G +  + TYN
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 167/346 (48%), Gaps = 50/346 (14%)

Query: 3   IFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + D M+R  +HP+      F+IL    AK    D  + +F ++   GL PD  TY  +I 
Sbjct: 361 LLDLMVRNGIHPNH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 61  CFCKMGRV---------------SPGFVVLGRILRS----------------------CF 83
             CK GRV               SPG +V   ++ S                      C 
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
             D + F S+I   C E R++E+  LF  +   G KPD+ TY+TLI+G C  G    A  
Sbjct: 478 --DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK 535

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L   M +      V  KPD +TY+T+ +G CK   ++ A  LF +M+   ++PD++TY  
Sbjct: 536 LLASMVS------VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           +++G         AK L++ + + G Q  + T+N+I++ LCKN   DEA R+ + +    
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           ++ +   +N ++      GR + AK+LF ++ +NG + DV +Y ++
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 6/249 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +  IG+ PD+ TY+ LI+ +C  G++     +L  ++     PD VT+ +LI G C
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC 560

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             SR+ +A  LF ++ + G  PD+ TY  ++ GL +T  T  A  L+  +     +    
Sbjct: 561 KISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL--- 617

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  TY+ I  GLCK    D+A  +F  +   ++  +  T+  +I         +EAK
Sbjct: 618 ---ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 674

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF  +   G+ P+V T++++   L + G ++E   L   M + G   ++ + N+++   
Sbjct: 675 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 734

Query: 279 CLTGRVNRA 287
              G + RA
Sbjct: 735 LQRGDITRA 743



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 129/275 (46%), Gaps = 9/275 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +FD M+R+   P  +    ++ G CLA     D    L   + S+G+ PD  TYN LIN 
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYNTLING 558

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +CK+ R+    V+   +  S  +PD +T+  +++GL    R   A  L+  +   G + +
Sbjct: 559 YCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLE 618

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY  +++GLC+   T  AL +F+ +   + +       +  T++ +   L K G  D+
Sbjct: 619 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVGRNDE 672

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK+LF  +    + PDV TY+ +           E   LF+ M + G   N    N I+ 
Sbjct: 673 AKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           +L + G +  A   L ++ +     +AS  +  +D
Sbjct: 733 KLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 184/357 (51%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K +  D  + +   +   G+ P+  TYN +++ +C  G+       
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT+ SL+  LC   R  EA  +F  +   G KP++ TY TL+ G   
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 135 TGHTIVALNLFEEMANGN---------------GEFGVVCK--------------PDAIT 165
            G  +    L + M                    + G V +              PD +T
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y T+   LCK G V+ A   F +M DE ++P  + Y SLI   C  + W++AK L +EM+
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D+G+  + + FN I++  CK G++ E+ +L +LM++IGV+PD   Y+TL+DG+CL G+++
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 531

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A +L  SM S G   D  +Y  LINGYCK   +E AL L+ EM S G+ P ++TYN
Sbjct: 532 EATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588



 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 191/380 (50%), Gaps = 45/380 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P+L TY ILI
Sbjct: 41  VFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTYGILI 98

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
              C  GR+  GF  LG +++  F  DA+ FT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 99  GSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGC 158

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF+Y  L+ GLC    +  AL L + M +  G+    C PD ++Y+T+ +G  KEG 
Sbjct: 159 IPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFFKEGD 214

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLI--------------------------------- 205
           +DKA   + +M D  I P+VVTY+S+I                                 
Sbjct: 215 LDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 206 --RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
              G+C +    EA     +M   GV+P+VVT+N +M+ LCKNG+  EA ++ + M + G
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           ++P+ + Y TL+ G+   G +     L   M  NG   + + + ILI  Y K  +++ A+
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            ++S+M  +G+ P  VTY T
Sbjct: 395 LVFSKMRQQGLNPDTVTYGT 414



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 176/339 (51%), Gaps = 8/339 (2%)

Query: 6   YMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           ++ +MH     P V ++N L   L KN        +F  +   GL P++ TY  L+  + 
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA 350

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G +     +L  ++R+   P+   F+ LI     + ++ +A  +F+K+R  G  PD  
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY T+I  LC++G    A+  FE+M +          P  I Y+++   LC     DKAK
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDER------LSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL L+M D  I  D + + S+I   C      E++ LF  M+  GV+P+++T++ +++  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  GKMDEA++LL  M+ +G++PD   YNTL++G+C   R+  A  LF  MES+G   D+
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +Y I++ G  + +    A  LY  +   G +  + TYN
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 167/346 (48%), Gaps = 50/346 (14%)

Query: 3   IFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + D M+R  +HP+      F+IL    AK    D  + +F ++   GL PD  TY  +I 
Sbjct: 361 LLDLMVRNGIHPNH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 61  CFCKMGRV---------------SPGFVVLGRILRS----------------------CF 83
             CK GRV               SPG +V   ++ S                      C 
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
             D + F S+I   C E R++E+  LF  +   G KPD+ TY+TLI+G C  G    A  
Sbjct: 478 --DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK 535

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L   M +      V  KPD +TY+T+ +G CK   ++ A  LF +M+   ++PD++TY  
Sbjct: 536 LLASMVS------VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           +++G         AK L++ + + G Q  + T+N+I++ LCKN   DEA R+ + +    
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           ++ +   +N ++      GR + AK+LF ++ +NG + DV +Y ++
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 6/249 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +  IG+ PD+ TY+ LI+ +C  G++     +L  ++     PD VT+ +LI G C
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC 560

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             SR+ +A  LF ++ + G  PD+ TY  ++ GL +T  T  A  L+  +     +    
Sbjct: 561 KISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL--- 617

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  TY+ I  GLCK    D+A  +F  +   ++  +  T+  +I         +EAK
Sbjct: 618 ---ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 674

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF  +   G+ P+V T++++   L + G ++E   L   M + G   ++ + N+++   
Sbjct: 675 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 734

Query: 279 CLTGRVNRA 287
              G + RA
Sbjct: 735 LQRGDITRA 743



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 129/275 (46%), Gaps = 9/275 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +FD M+R+   P  +    ++ G CLA     D    L   + S+G+ PD  TYN LIN 
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYNTLING 558

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +CK+ R+    V+   +  S  +PD +T+  +++GL    R   A  L+  +   G + +
Sbjct: 559 YCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLE 618

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY  +++GLC+   T  AL +F+ +   + +       +  T++ +   L K G  D+
Sbjct: 619 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVGRNDE 672

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK+LF  +    + PDV TY+ +           E   LF+ M + G   N    N I+ 
Sbjct: 673 AKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           +L + G +  A   L ++ +     +AS  +  +D
Sbjct: 733 KLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 184/357 (51%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K +  D  + +   +   G+ P+  TYN +++ +C  G+       
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT+ SL+  LC   R  EA  +F  +   G KP++ TY TL+ G   
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 135 TGHTIVALNLFEEMANGN---------------GEFGVVCK--------------PDAIT 165
            G  +    L + M                    + G V +              PD +T
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y T+   LCK G V+ A   F +M DE ++P  + Y SLI   C  + W++AK L +EM+
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D+G+  + + FN I++  CK G++ E+ +L +LM++IGV+PD   Y+TL+DG+CL G+++
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 531

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A +L  SM S G   D  +Y  LINGYCK   +E AL L+ EM S G+ P ++TYN
Sbjct: 532 EATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 191/380 (50%), Gaps = 45/380 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P+L TY IL+
Sbjct: 41  VFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTYGILM 98

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
              C  GR+  GF  LG +++  F  DA+ FT ++KGLCA+ R  +A  +   ++   GC
Sbjct: 99  GSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGC 158

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF+Y  L+ GLC    +  AL L + M +  G+    C PD ++Y+T+ +G  KEG 
Sbjct: 159 IPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFFKEGD 214

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLI--------------------------------- 205
           +DKA   + +M D  I P+VVTY+S+I                                 
Sbjct: 215 LDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 206 --RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
              G+C +    EA     +M   GV+P+VVT+N +M+ LCKNG+  EA ++ + M + G
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           ++P+ + Y TL+ G+   G +     L   M  NG   + + + ILI  Y K  +++ A+
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            ++S+M  +G+ P  VTY T
Sbjct: 395 LVFSKMRQQGLNPDTVTYGT 414



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 176/339 (51%), Gaps = 8/339 (2%)

Query: 6   YMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           ++ +MH     P V ++N L   L KN        +F  +   GL P++ TY  L+  + 
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA 350

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G +     +L  ++R+   P+   F+ LI     + ++ +A  +F+K+R  G  PD  
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY T+I  LC++G    A+  FE+M +          P  I Y+++   LC     DKAK
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDER------LSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL L+M D  I  D + + S+I   C      E++ LF  M+  GV+P+++T++ +++  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  GKMDEA++LL  M+ +G++PD   YNTL++G+C   R+  A  LF  MES+G   D+
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +Y I++ G  + +    A  LY  +   G +  + TYN
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 166/344 (48%), Gaps = 46/344 (13%)

Query: 3   IFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + D M+R  +HP+      F+IL    AK    D  + +F ++   GL PD  TY  +I 
Sbjct: 361 LLDLMVRNGIHPNH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 61  CFCKMGRV---------------SPGFVVLGRILRSC--------------------FTP 85
             CK GRV               SPG +V   ++ S                        
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D + F S+I   C E R++E+  LF  +   G KPD+ TY+TLI+G C  G    A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
             M +      V  KPD +TY+T+ +G CK   ++ A  LF +M+   ++PD++TY  ++
Sbjct: 538 ASMVS------VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIIL 591

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
           +G         AK L++ + + G Q  + T+N+I++ LCKN   DEA R+ + +    ++
Sbjct: 592 QGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 651

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +   +N ++      GR + AK+LF ++ +NG + DV +Y ++
Sbjct: 652 LETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 6/249 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +  IG+ PD+ TY+ LI+ +C  G++     +L  ++     PD VT+ +LI G C
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC 560

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             SR+ +A  LF ++ + G  PD+ TY  ++ GL +T  T  A  L+  +     +    
Sbjct: 561 KISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL--- 617

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  TY+ I  GLCK    D+A  +F  +   ++  +  T+  +I         +EAK
Sbjct: 618 ---ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 674

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF  +   G+ P+V T++++   L + G ++E   L   M + G   ++ + N+++   
Sbjct: 675 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 734

Query: 279 CLTGRVNRA 287
              G + RA
Sbjct: 735 LQRGDITRA 743



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 129/275 (46%), Gaps = 9/275 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +FD M+R+   P  +    ++ G CLA     D    L   + S+G+ PD  TYN LIN 
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYNTLING 558

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +CK+ R+    V+   +  S  +PD +T+  +++GL    R   A  L+  +   G + +
Sbjct: 559 YCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLE 618

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY  +++GLC+   T  AL +F+ +   + +       +  T++ +   L K G  D+
Sbjct: 619 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVGRNDE 672

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK+LF  +    + PDV TY+ +           E   LF+ M + G   N    N I+ 
Sbjct: 673 AKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           +L + G +  A   L ++ +     +AS  +  +D
Sbjct: 733 KLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 65/169 (38%), Gaps = 42/169 (24%)

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG---VRPDASVYN 272
           +A+ +F E++ +G   ++   N  + ++ ++      SR    M + G   V P+   Y 
Sbjct: 37  DARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRY-NRMARAGADEVTPNLCTYG 95

Query: 273 TLMDGFCLTGRV--------NRAKELFV----------------------------SMES 296
            LM   C  GR+        N  K+ F+                             M  
Sbjct: 96  ILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG--IRPTVVTYNT 343
            GC+ +VFSY IL+ G C +   + AL L   M   G    P VV+Y T
Sbjct: 156 LGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTT 204


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 184/357 (51%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K +  D  + +   +   G+ P+  TYN +++ +C  G+       
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT+ SL+  LC   R  EA  +F  +   G KP++ TY TL+ G   
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 135 TGHTIVALNLFEEMANGN---------------GEFGVVCK--------------PDAIT 165
            G  +    L + M                    + G V +              PD +T
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y T+   LCK G V+ A   F +M DE ++P  + Y SLI   C  + W++AK L +EM+
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D+G+  + + FN I++  CK G++ E+ +L +LM++IGV+PD   Y+TL+DG+CL G+++
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 531

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A +L  SM S G   D  +Y  LINGYCK   +E AL L+ EM S G+ P ++TYN
Sbjct: 532 EATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588



 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 191/380 (50%), Gaps = 45/380 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P+L TY ILI
Sbjct: 41  VFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTYGILI 98

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
              C  GR+  GF  LG +++  F  DA+ FT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 99  GSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGC 158

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF+Y  L+ GLC    +  AL L + M +  G+    C PD ++Y+T+ +G  KEG 
Sbjct: 159 IPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFFKEGD 214

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLI--------------------------------- 205
           +DKA   + +M D  I P+VVTY+S+I                                 
Sbjct: 215 LDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 206 --RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
              G+C +    EA     +M   GV+P+VVT+N +M+ LCKNG+  EA ++ + M + G
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           ++P+ + Y TL+ G+   G +     L   M  NG   + + + ILI  Y K  +++ A+
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            ++S+M  +G+ P  VTY T
Sbjct: 395 LVFSKMRQQGLNPDTVTYGT 414



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 176/339 (51%), Gaps = 8/339 (2%)

Query: 6   YMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           ++ +MH     P V ++N L   L KN        +F  +   GL P++ TY  L+  + 
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA 350

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G +     +L  ++R+   P+   F+ LI     + ++ +A  +F+K+R  G  PD  
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY T+I  LC++G    A+  FE+M +          P  I Y+++   LC     DKAK
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDER------LSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL L+M D  I  D + + S+I   C      E++ LF  M+  GV+P+++T++ +++  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  GKMDEA++LL  M+ +G++PD   YNTL++G+C   R+  A  LF  MES+G   D+
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +Y I++ G  + +    A  LY  +   G +  + TYN
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 166/344 (48%), Gaps = 46/344 (13%)

Query: 3   IFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + D M+R  +HP+      F+IL    AK    D  + +F ++   GL PD  TY  +I 
Sbjct: 361 LLDLMVRNGIHPNH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 61  CFCKMGRV---------------SPGFVVLGRILRSC--------------------FTP 85
             CK GRV               SPG +V   ++ S                        
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D + F S+I   C E R++E+  LF  +   G KPD+ TY+TLI+G C  G    A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
             M +      V  KPD +TY+T+ +G CK   ++ A  LF +M+   ++PD++TY  ++
Sbjct: 538 ASMVS------VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIIL 591

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
           +G         AK L++ + + G Q  + T+N+I++ LCKN   DEA R+ + +    ++
Sbjct: 592 QGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 651

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +   +N ++      GR + AK+LF ++ +NG + DV +Y ++
Sbjct: 652 LETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 6/249 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +  IG+ PD+ TY+ LI+ +C  G++     +L  ++     PD VT+ +LI G C
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC 560

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             SR+ +A  LF ++ + G  PD+ TY  ++ GL +T  T  A  L+  +     +    
Sbjct: 561 KISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL--- 617

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  TY+ I  GLCK    D+A  +F  +   ++  +  T+  +I         +EAK
Sbjct: 618 ---ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 674

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF  +   G+ P+V T++++   L + G ++E   L   M + G   ++ + N+++   
Sbjct: 675 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 734

Query: 279 CLTGRVNRA 287
              G + RA
Sbjct: 735 LQRGDITRA 743



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 129/275 (46%), Gaps = 9/275 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +FD M+R+   P  +    ++ G CLA     D    L   + S+G+ PD  TYN LIN 
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYNTLING 558

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +CK+ R+    V+   +  S  +PD +T+  +++GL    R   A  L+  +   G + +
Sbjct: 559 YCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLE 618

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY  +++GLC+   T  AL +F+ +   + +       +  T++ +   L K G  D+
Sbjct: 619 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVGRNDE 672

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK+LF  +    + PDV TY+ +           E   LF+ M + G   N    N I+ 
Sbjct: 673 AKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           +L + G +  A   L ++ +     +AS  +  +D
Sbjct: 733 KLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 188/359 (52%), Gaps = 31/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +++ +   L K +  D   +  +++ + G+ PD +TYN LI  +   G+      
Sbjct: 253 PPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVR 312

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   + R    PD V   +L+  LC   +I EA  +F  +   G  PDVF+YT ++NG  
Sbjct: 313 VFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA 372

Query: 134 RTGHTIVALNLFEEMANGNG------EFGVV------------------------CKPDA 163
             G  +   +LF+ M  G+G       F V+                         KP  
Sbjct: 373 TKGCLVDMTDLFDLML-GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHV 431

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY T+   LC+ G +D A E F +M D+ + PD   Y  LI+GFC      +AK L  E
Sbjct: 432 VTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISE 491

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           +M+ G++ ++V F  I+N LCK G++ +A  + +L + +G+ PDA VYN LMDG+CL G+
Sbjct: 492 IMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGK 551

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +A  +F +M S G   +V  YG L+NGYCK   I+  LSL+ EML KGI+P+ + YN
Sbjct: 552 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 610



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/313 (35%), Positives = 164/313 (52%), Gaps = 10/313 (3%)

Query: 36  VLSLFKRLNSIG-----LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
            ++LF R  S       L P  YTY IL++C  +  R        G++LR+    DA+  
Sbjct: 92  AVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIA 151

Query: 91  TSLIKGLCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           + L+KG C   R  EA   L  +    GC PDVF+Y  L+  LC  G +  A +L   MA
Sbjct: 152 SHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMA 211

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
            G    G VC PD + Y+T+ DG  KEG V+KA +LF +M    I PD+VTY+S++   C
Sbjct: 212 EG----GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALC 267

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            A   ++A+    +M+++GV P+  T+N ++      G+  EA R+ + M +  + PD  
Sbjct: 268 KARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVV 327

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
             NTLM   C  G++  A+++F +M   G   DVFSY I++NGY     +     L+  M
Sbjct: 328 ALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLM 387

Query: 330 LSKGIRPTVVTYN 342
           L  GI P + T+N
Sbjct: 388 LGDGIAPDIYTFN 400



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 168/341 (49%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M  M    P V S+ I+    A       +  LF  +   G+ PD+YT+N+LI  +
Sbjct: 348 VFDTMA-MKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAY 406

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +    ++   +      P  VT+ ++I  LC   ++ +A   F ++   G  PD 
Sbjct: 407 ANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDK 466

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           + Y  LI G C  G  + A  L  E+ N NG      + D + + +I + LCK G V  A
Sbjct: 467 YAYHCLIQGFCTHGSLLKAKELISEIMN-NG-----MRLDIVFFGSIINNLCKLGRVMDA 520

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F    +  ++PD V Y  L+ G+C      +A  +F  M+  G++PNVV +  ++N 
Sbjct: 521 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 580

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G++DE   L   M+Q G++P   +YN ++DG    GR   AK  F  M  +G   +
Sbjct: 581 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMN 640

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y I++ G  KN+  + A+ L+ E+ +  ++  ++T NT
Sbjct: 641 KCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNT 681



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 175/376 (46%), Gaps = 50/376 (13%)

Query: 10  MHPSP-----PPVCSFNILFGCL---AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +H +P     P V S+NIL   L    K+   D +L +     ++   PD+  YN +I+ 
Sbjct: 172 LHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTV-CSPDVVAYNTVIDG 230

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           F K G V+    +   +++    PD VT++S++  LC    + +A A   ++   G  PD
Sbjct: 231 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPD 290

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +TY  LI G   TG    A+ +F+EM   +        PD +  +T+   LCK G + +
Sbjct: 291 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS------ILPDVVALNTLMGSLCKYGKIKE 344

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV--- 238
           A+++F  M  +  NPDV +YT ++ G+       +   LF  M+  G+ P++ TFNV   
Sbjct: 345 ARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIK 404

Query: 239 -------------IMNE-------------------LCKNGKMDEASRLLELMIQIGVRP 266
                        I NE                   LC+ GKMD+A      MI  GV P
Sbjct: 405 AYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVP 464

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y+ L+ GFC  G + +AKEL   + +NG   D+  +G +IN  CK   +  A +++
Sbjct: 465 DKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIF 524

Query: 327 SEMLSKGIRPTVVTYN 342
              ++ G+ P  V YN
Sbjct: 525 DLTVNVGLHPDAVVYN 540



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 158/334 (47%), Gaps = 7/334 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ M R H   P V ++  +   L +    D  +  F ++   G+ PD Y Y+ LI  F
Sbjct: 418 IFNEM-RDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGF 476

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +     ++  I+ +    D V F S+I  LC   R+M+A  +F      G  PD 
Sbjct: 477 CTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 536

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  L++G C  G    AL +F+ M +   E      P+ + Y T+ +G CK G +D+ 
Sbjct: 537 VVYNMLMDGYCLVGKMEKALRVFDAMVSAGIE------PNVVGYGTLVNGYCKIGRIDEG 590

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M  + I P  + Y  +I G   A     AK  F EM + G+  N  T+++++  
Sbjct: 591 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 650

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L KN   DEA  L + +  + V+ D    NT++ G   T RV  AK+LF S+  +G +  
Sbjct: 651 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 710

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
             +Y I+I    K   +E A  ++S M + G  P
Sbjct: 711 AVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEP 744



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 109/213 (51%), Gaps = 5/213 (2%)

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C +G  + A+ LF   A+   +   V  P + TY+ + D   +    + A   F ++   
Sbjct: 85  CGSGPAL-AVALFNRAAS-RAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRT 142

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDE 251
            +  D +  + L++GFC A   +EA  + +    + G  P+V ++N+++  LC  GK  +
Sbjct: 143 GLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQ 202

Query: 252 ASRLLELMIQIGV--RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           A  LL +M + G    PD   YNT++DGF   G VN+A +LF  M   G   D+ +Y  +
Sbjct: 203 ADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSV 262

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  CK + ++ A +   +M++KG+ P   TYN
Sbjct: 263 VHALCKARAMDKAEAFLRQMVNKGVLPDNWTYN 295



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 7/254 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+     P  V  +  L     K    D  LSLF+ +   G+ P    YNI+I+  
Sbjct: 558 VFDAMVSAGIEPN-VVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + GR  P  V    +  S    +  T++ +++GL       EA  LF +LRA   K D+
Sbjct: 617 FEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDI 676

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T  T+I G+ +T     A +LF  ++      G+V  P A+TYS +   L KEG V++A
Sbjct: 677 ITLNTMIAGMFQTRRVEEAKDLFASISRS----GLV--PCAVTYSIMITNLLKEGLVEEA 730

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +++F  M++    PD      ++R     N+   A     ++ ++      +T  ++++ 
Sbjct: 731 EDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDL 790

Query: 243 LCKNGKMDEASRLL 256
               G   E  R L
Sbjct: 791 FSSKGTCREQIRFL 804


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 186/342 (54%), Gaps = 8/342 (2%)

Query: 4   FDYMLRM-HPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            D   RM H  P P +  F  L   +AK   YD V+SLF+++  +G+ P L T NI+++C
Sbjct: 68  LDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHC 127

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C   +       LG++++  F PD VTFTSL+ G C  +RI +A ALF ++   G KP+
Sbjct: 128 VCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPN 187

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V TYTTLI  LC+  H   A+ LF +M   NG      +P+ +TY+ +  GLC+ G    
Sbjct: 188 VVTYTTLIRCLCKNRHLNHAVELFNQMGT-NGS-----RPNVVTYNALVTGLCEIGRWGD 241

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L   M    I P+V+T+T+LI  F       EAK L+  M+   V P+V T+  ++N
Sbjct: 242 AAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLIN 301

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LC  G +DEA ++  LM + G  P+  +Y TL+ GFC + RV    ++F  M   G + 
Sbjct: 302 GLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVA 361

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  +Y +LI GYC     + A  ++++M S+   P + TYN 
Sbjct: 362 NTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNV 403



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 181/339 (53%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD +L M    P V ++  L  CL KN+H +  + LF ++ + G  P++ TYN L+   
Sbjct: 175 LFDQILGM-GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGL 233

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++GR      +L  +++    P+ +TFT+LI       ++MEA  L+  +      PDV
Sbjct: 234 CEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDV 293

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FTY +LINGLC  G    A  +F  M   NG     C P+ + Y+T+  G CK   V+  
Sbjct: 294 FTYGSLINGLCMYGLLDEARQMFYLMER-NG-----CYPNEVIYTTLIHGFCKSKRVEDG 347

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++F +M  + +  + +TYT LI+G+C     + A+ +F +M  +   P++ T+NV+++ 
Sbjct: 348 MKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDG 407

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC NGK+++A  + E M +  +  +   Y  ++ G C  G+V  A +LF S+ S G   +
Sbjct: 408 LCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPN 467

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           V +Y  +I+G+C+   I  A SL+ +M   G  P    Y
Sbjct: 468 VITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 1/175 (0%)

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           + +GL    F D A +LF +M      P ++ +T L+      N ++    LF +M   G
Sbjct: 55  LRNGLHNLQFND-ALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILG 113

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           + P + T N++M+ +C + +   AS  L  M+++G  PD   + +L++G+C   R+  A 
Sbjct: 114 IPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAI 173

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LF  +   G   +V +Y  LI   CKN+ +  A+ L+++M + G RP VVTYN 
Sbjct: 174 ALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNA 228



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%)

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           +Y  ++R   +   +N+A  LF  M+     P+++ F  +++ + K  + D    L E M
Sbjct: 50  SYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQM 109

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
             +G+ P     N +M   CL+ +  RA      M   G   D+ ++  L+NGYC    I
Sbjct: 110 QILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRI 169

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           E A++L+ ++L  G +P VVTY T
Sbjct: 170 EDAIALFDQILGMGFKPNVVTYTT 193


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 186/340 (54%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  ML   P P  +  F+ LF  + +  HY+TV+ L K +  +G+  D+++ +ILINCFC
Sbjct: 50  FRLMLLRKPLPC-IVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFC 108

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            + RV  G  VL +IL+    P  VTFT+L+ GLC E ++ +   L+  +   G +P+V+
Sbjct: 109 HLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVY 168

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY  +IN L ++G    AL   ++M        V C P+ + YST+ DG C  G +D+A+
Sbjct: 169 TYNVIINSLSKSGKANEALGFLKQMEK------VGCVPNVVNYSTLIDGYCLRGQMDEAR 222

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +F  M  +   P+V TYTSL+ G+C      EA  L  E + +G+ P++VTF  I++ L
Sbjct: 223 SVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGL 282

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C+ G+   A +L   +   G  P+   Y  L+DG C  G +  A  LF  M+ +    ++
Sbjct: 283 CRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNL 342

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             Y ILI+  CK  +I+    L+S ++ +G++P V TY  
Sbjct: 343 VIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTA 382



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 174/326 (53%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L      D V+ L+  +   GL P++YTYN++IN   K G+ +     
Sbjct: 130 PSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGF 189

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ +    P+ V +++LI G C   ++ EA ++F  + + GC P+V+TYT+L+NG C+
Sbjct: 190 LKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCK 249

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ L +E        G+V  PD +T++TI  GLC+ G    A++LF  +     
Sbjct: 250 IERIEEAVQLLDETLRK----GLV--PDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGH 303

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+++TY  L+ G C   +  EA  LF EM    V+PN+V + ++++ LCK GK+ +   
Sbjct: 304 TPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKE 363

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +I  G++P+   Y  L+   C  G +  A +LF  ME +GC  D  +Y ++I G+ 
Sbjct: 364 LFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFL 423

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           ++K+   A  L  EM+++G      T
Sbjct: 424 QHKDPSMARQLVEEMVNRGFSADAAT 449



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 163/308 (52%), Gaps = 9/308 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D ML +    P V ++N++   L+K+   +  L   K++  +G  P++  Y+ LI+ +
Sbjct: 154 LYDDML-VRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGY 212

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G++     V   ++    TP+  T+TSL+ G C   RI EA  L  +    G  PD+
Sbjct: 213 CLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDI 272

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            T+TT+I+GLCR G  + A  LF  + A+G+        P+ +TY  + DGLCK G +++
Sbjct: 273 VTFTTIISGLCRAGRPLAAQQLFRYICAHGH-------TPNIMTYGVLLDGLCKHGNLEE 325

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  LF +M+   + P++V YT LI   C      + K LF  ++D+G++PNV T+  ++ 
Sbjct: 326 AFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVG 385

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G + EA +L   M + G  PD   YN ++ GF      + A++L   M + G   
Sbjct: 386 ALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSA 445

Query: 302 DVFSYGIL 309
           D  +  +L
Sbjct: 446 DAATRALL 453



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 134/262 (51%), Gaps = 6/262 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L          D   S+F  + S G  P++YTY  L+N +CK+ R+     +
Sbjct: 200 PNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQL 259

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   LR    PD VTFT++I GLC   R + A  LF  + A G  P++ TY  L++GLC+
Sbjct: 260 LDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCK 319

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  LF+EM           KP+ + Y+ + D LCK G +   KELF ++ DE +
Sbjct: 320 HGNLEEAFALFQEMQRST------VKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGL 373

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TYT+L+   C      EA  LF +M + G  P+   +NVI+    ++     A +
Sbjct: 374 KPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQ 433

Query: 255 LLELMIQIGVRPDASVYNTLMD 276
           L+E M+  G   DA+    L D
Sbjct: 434 LVEEMVNRGFSADAATRALLND 455



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 65/134 (48%)

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
           +  D ++A   F  M+ +   P +V F+ + + + + G  +    L + +  +G+  D  
Sbjct: 39  WFKDKDDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIH 98

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
             + L++ FC   RV+    +   +   G    + ++  L+NG C   +++  + LY +M
Sbjct: 99  SLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDM 158

Query: 330 LSKGIRPTVVTYNT 343
           L +G++P V TYN 
Sbjct: 159 LVRGLQPNVYTYNV 172


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 185/329 (56%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP VC FN+L   L K    +    LF  +   GL P + ++N LIN +CK G +  GF 
Sbjct: 222 PPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFR 281

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   ++ +   PD  T++ LI GLC E ++ +A  LF ++   G  P+  T+TTLING C
Sbjct: 282 LKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHC 341

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            TG   + + ++++M       GV  KPD ITY+T+ +GLCK G + +AK+L ++M    
Sbjct: 342 VTGRADLGMEIYQQMLRK----GV--KPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG 395

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT LI G C   D   A  +  EM+ +G++ + V F  +++  C+ G++ EA 
Sbjct: 396 LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAE 455

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R L  M++ G++PD + Y  ++ GFC  G V    +L   M+ +G +  V +Y +L+NG 
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK  +++ A  L   ML+ G+ P  +TYN
Sbjct: 516 CKQGQMKNANMLLDAMLNLGVVPDDITYN 544



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 162/314 (51%), Gaps = 6/314 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K+ + D    L + +    +FPD++TY++LIN  CK G++     +
Sbjct: 258 PTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKL 317

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+ VTFT+LI G C   R      ++ ++   G KPDV TY TLINGLC+
Sbjct: 318 FLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCK 377

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  EM           KPD  TY+ + DG CKEG ++ A E+  +M  E I
Sbjct: 378 VGDLREAKKLVIEMTQRG------LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGI 431

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V +T+LI GFC      EA+    EM++ G++P+  T+ ++++  CK G +    +
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFK 491

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M   G  P    YN L++G C  G++  A  L  +M + G + D  +Y IL+ G+C
Sbjct: 492 LLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHC 551

Query: 315 KNKEIEGALSLYSE 328
           K+   E    L SE
Sbjct: 552 KHGNREDFDKLQSE 565



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           A A + ++   G  PDV  +  L++ LC+      A  LF E+    G+ G+  +P  ++
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEI----GKRGL--RPTVVS 262

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++T+ +G CK G +D+   L   M +  + PDV TY+ LI G C     ++A  LF+EM 
Sbjct: 263 FNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMC 322

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D+G+ PN VTF  ++N  C  G+ D    + + M++ GV+PD   YNTL++G C  G + 
Sbjct: 323 DRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLR 382

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            AK+L + M   G   D F+Y +LI+G CK  ++E AL +  EM+ +GI 
Sbjct: 383 EAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIE 432



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 161/339 (47%), Gaps = 32/339 (9%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHY---DTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           R+ PS  P    N L   +  N H     ++LS FK L++       + + + I+ +C M
Sbjct: 60  RILPSLTP----NHLIDLINLNPHSLSPPSLLSFFKWLST------QHHFRLSIHSYCTM 109

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK-LRAFGCKPDVFT 124
                 F+   ++L            SL++ + +      A+++FT  L A G       
Sbjct: 110 TH----FLCTHKMLSEA--------QSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLV 157

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           ++ L+N    +G+   A+  F  +   N +          +   + D L K      A  
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFH------SCGYLFDRLMKLNLTSPAWA 211

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
            + ++ D    PDV  +  L+   C  +  NEA+ LF E+  +G++P VV+FN ++N  C
Sbjct: 212 FYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYC 271

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K+G +D+  RL   M++  V PD   Y+ L++G C  G+++ A +LF+ M   G + +  
Sbjct: 272 KSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDV 331

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  LING+C     +  + +Y +ML KG++P V+TYNT
Sbjct: 332 TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNT 370


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 187/329 (56%), Gaps = 9/329 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S N L   L K   +  V  ++K +    + P+L T+N +IN  CK+G+++    V+ 
Sbjct: 195 VLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVD 254

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRI---MEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
            +    F P+ VT+ +LI G C   R+    +A A+  ++      P+  T+  LI+G C
Sbjct: 255 DMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFC 314

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +  +   AL +FEEM +         KP  +TY+++ +GLC EG +++AK L  +M   N
Sbjct: 315 KDENLSAALKVFEEMQSQG------LKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSN 368

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+V+TY +LI G+C      EA+ LF  +  QG+ PNV+TFN +++  CK GKM+EA 
Sbjct: 369 LKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAF 428

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L ++M++ G  P+AS YN L+ GFC  G++   K L   M+  G   D  +Y ILI+ +
Sbjct: 429 LLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAW 488

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           C+ KE + A  L  EML KG++P+ +TYN
Sbjct: 489 CEKKEPKKAARLIDEMLDKGLKPSHLTYN 517



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 181/343 (52%), Gaps = 10/343 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++  M+R   SP  + +FN +   L K    +    +   +   G +P++ TYN LI+ +
Sbjct: 217 VYKEMIRRKISPNLI-TFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGY 275

Query: 63  CKMGRVSPGF---VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           CKMGRV   +    +L  ++ +  +P++VTF  LI G C +  +  A  +F ++++ G K
Sbjct: 276 CKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLK 335

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P V TY +L+NGLC  G    A  L +EM + N       KP+ ITY+ + +G CK+  +
Sbjct: 336 PTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSN------LKPNVITYNALINGYCKKKLL 389

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           ++A+ELF  +  + + P+V+T+ +L+ G+C      EA  L   M+++G  PN  T+N +
Sbjct: 390 EEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCL 449

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   C+ GKM+E   LL  M   GV+ D   YN L+  +C      +A  L   M   G 
Sbjct: 450 IVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGL 509

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                +Y IL+NGYC    +  AL+L  +M  +G    VVTYN
Sbjct: 510 KPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYN 552



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 170/337 (50%), Gaps = 23/337 (6%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            I   M+    SP  V +FN+L     K+++    L +F+ + S GL P + TYN L+N 
Sbjct: 289 AILKEMVENKVSPNSV-TFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNG 347

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C  G+++   V+L  +L S   P+ +T+ +LI G C +  + EA  LF  +   G  P+
Sbjct: 348 LCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPN 407

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V T+ TL++G C+ G    A  L + M     E G +  P+A TY+ +  G C+EG +++
Sbjct: 408 VITFNTLLHGYCKFGKMEEAFLLQKVML----EKGFL--PNASTYNCLIVGFCREGKMEE 461

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
            K L  +M+   +  D VTY  LI  +C   +  +A  L  EM+D+G++P+ +T+N+++N
Sbjct: 462 VKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLN 521

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             C  G +  A  L + M + G   +   YN L+ G+C  G++  A  L   M   G + 
Sbjct: 522 GYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIP 581

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           +  +Y I+       KE         EM+ KG  P +
Sbjct: 582 NRTTYEII-------KE---------EMMEKGFLPDI 602



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/186 (38%), Positives = 111/186 (59%), Gaps = 3/186 (1%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC---YANDWNEA 217
           P+ IT++T+ +GLCK G ++KA ++   MK     P+VVTY +LI G+C         +A
Sbjct: 228 PNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKA 287

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +  EM++  V PN VTFNV+++  CK+  +  A ++ E M   G++P    YN+L++G
Sbjct: 288 DAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNG 347

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  G++N AK L   M S+    +V +Y  LINGYCK K +E A  L+  +  +G+ P 
Sbjct: 348 LCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPN 407

Query: 338 VVTYNT 343
           V+T+NT
Sbjct: 408 VITFNT 413


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 184/357 (51%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K +  D  + +   +   G+ P+  TYN +++ +C  G+       
Sbjct: 232 PNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT+ SL+  LC   R  EA  +F  +   G KP++ TY TL+ G   
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 135 TGHTIVALNLFEEMANGN---------------GEFGVVCK--------------PDAIT 165
            G  +    L + M                    + G V +              PD +T
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y T+   LCK G V+ A   F +M DE ++P  + Y SLI   C  + W++AK L +EM+
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D+G+  + + FN I++  CK G++ E+ +L +LM++IGV+P+   Y+TL+DG+CL G+++
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMD 531

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A +L  SM S G   D  +Y  LINGYCK   +E AL L+ EM S G+ P ++TYN
Sbjct: 532 EATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 190/380 (50%), Gaps = 45/380 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P+L TY ILI
Sbjct: 41  VFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTYGILI 98

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
              C  GR+  GF  LG +++  F  DA+ FT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 99  GSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGC 158

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF+Y  L+ GLC    +  AL L + M +  G+    C PD ++Y+T+ +G  KEG 
Sbjct: 159 IPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFFKEGD 214

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLI--------------------------------- 205
           +DKA   + +M D  I P+VVTY S+I                                 
Sbjct: 215 LDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 206 --RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
              G+C +    EA     +M   GV+P+VVT+N +M+ LCKNG+  EA ++ + M + G
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           ++P+ + Y TL+ G+   G +     L   M  NG   + + + ILI  Y K  +++ A+
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            ++S+M  +G+ P  VTY T
Sbjct: 395 LVFSKMRQQGLNPDTVTYGT 414



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 176/339 (51%), Gaps = 8/339 (2%)

Query: 6   YMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           ++ +MH     P V ++N L   L KN        +F  +   GL P++ TY  L+  + 
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA 350

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G +     +L  ++R+   P+   F+ LI     + ++ +A  +F+K+R  G  PD  
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY T+I  LC++G    A+  FE+M +          P  I Y+++   LC     DKAK
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDER------LSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL L+M D  I  D + + S+I   C      E++ LF  M+  GV+PN++T++ +++  
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGY 524

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  GKMDEA++LL  M+ +G++PD   YNTL++G+C   R+  A  LF  MES+G   D+
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +Y I++ G  + +    A  LY  +   G +  + TYN
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYN 623



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 166/344 (48%), Gaps = 46/344 (13%)

Query: 3   IFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + D M+R  +HP+      F+IL    AK    D  + +F ++   GL PD  TY  +I 
Sbjct: 361 LLDLMVRNGIHPNH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 61  CFCKMGRV---------------SPGFVVLGRILRSC--------------------FTP 85
             CK GRV               SPG +V   ++ S                        
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D + F S+I   C E R++E+  LF  +   G KP++ TY+TLI+G C  G    A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLL 537

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
             M +      V  KPD +TY+T+ +G CK   ++ A  LF +M+   ++PD++TY  ++
Sbjct: 538 ASMVS------VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIIL 591

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
           +G         AK L++ + + G Q  + T+N+I++ LCKN   DEA R+ + +    ++
Sbjct: 592 QGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 651

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +   +N ++      GR + AK+LF ++ +NG + DV +Y ++
Sbjct: 652 LETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 695



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 122/249 (48%), Gaps = 6/249 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +  IG+ P++ TY+ LI+ +C  G++     +L  ++     PD VT+ +LI G C
Sbjct: 501 LFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC 560

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             SR+ +A  LF ++ + G  PD+ TY  ++ GL +T  T  A  L+  +     +    
Sbjct: 561 KISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL--- 617

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  TY+ I  GLCK    D+A  +F  +   ++  +  T+  +I         +EAK
Sbjct: 618 ---ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 674

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF  +   G+ P+V T++++   L + G ++E   L   M + G   ++ + N+++   
Sbjct: 675 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 734

Query: 279 CLTGRVNRA 287
              G + RA
Sbjct: 735 LQRGDITRA 743



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 129/275 (46%), Gaps = 9/275 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +FD M+R+   P  +    ++ G CLA     D    L   + S+G+ PD  TYN LIN 
Sbjct: 501 LFDLMVRIGVKPNIITYSTLIDGYCLAGK--MDEATKLLASMVSVGMKPDCVTYNTLING 558

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +CK+ R+    V+   +  S  +PD +T+  +++GL    R   A  L+  +   G + +
Sbjct: 559 YCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLE 618

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY  +++GLC+   T  AL +F+ +   + +       +  T++ +   L K G  D+
Sbjct: 619 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVGRNDE 672

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK+LF  +    + PDV TY+ +           E   LF+ M + G   N    N I+ 
Sbjct: 673 AKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           +L + G +  A   L ++ +     +AS  +  +D
Sbjct: 733 KLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 185/362 (51%), Gaps = 33/362 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSPGF 72
           P V ++N L   L K         LFK ++     + PDL TYN LI+ FC++ +     
Sbjct: 148 PDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAM 207

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   ++   + PD VT+ S++ GL  +S + EA  +F K+   GC P+  TY+ +++G 
Sbjct: 208 KLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGH 267

Query: 133 CRTGHTIVALNLFEEMANG---------NGEFGVVCK--------------------PDA 163
           CR G+    L L+EEM            N    ++CK                    PD 
Sbjct: 268 CRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDV 327

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY+ + DGLCK   VDKA ELF  M D    PD+V+Y+ ++ G C  N  ++A+ LF  
Sbjct: 328 VTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDR 387

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+++ + P+VVTFN++M+ LCK GK+DEA  LL++M +  V PD     TLM G C   R
Sbjct: 388 MIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKR 447

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG--IRPTVVTY 341
            + A  LF  M   G + DV  + I++ G C+  ++  AL  +  M+       P VVTY
Sbjct: 448 TDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTY 507

Query: 342 NT 343
            T
Sbjct: 508 TT 509



 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 185/331 (55%), Gaps = 18/331 (5%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N L   L K+++ +    L + + S G  PD  TYN +++  C+MG+VS        +
Sbjct: 82  AYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSM 141

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK--PDVFTYTTLINGLCRTG 136
               ++PD V +  L+  L  E ++ EA  LF  +     K  PD+ TY TLI+G CR  
Sbjct: 142 PSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVE 201

Query: 137 HTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            T  A+ LF++         V+ K   PD +TY++I  GL ++  +D+A+E+F KM D  
Sbjct: 202 KTDEAMKLFKD---------VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSG 252

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCL--FIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             P+  TY+ ++ G C     N A+CL  + EM ++   P+V+  N +++ LCK  K+D+
Sbjct: 253 CAPNGATYSIVLSGHCRVG--NMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDD 310

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A ++LE M +IG  PD   YN L+DG C T  V++A ELF +M  NGC  D+ SY +++N
Sbjct: 311 AHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLN 370

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G CK  ++  A  L+  M+ + + P VVT+N
Sbjct: 371 GLCKTNKVHDARVLFDRMIERKLVPDVVTFN 401



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 168/330 (50%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K       L + + +   G+ PD+ TY I+++  C+ G+V     +
Sbjct: 8   PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADEL 67

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++    + + V + +LI GLC +  I  A  L  ++ + G +PD  TY T+++GLCR
Sbjct: 68  FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCR 127

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF--LKMKDE 192
            G    A   F+ M +          PD + Y+ + D L KEG V +A  LF  + M D 
Sbjct: 128 MGKVSEAKQFFDSMPSRG------YSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADR 181

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PD++TY +LI GFC     +EA  LF +++ +G  P+ VT+N I+  L +   MDEA
Sbjct: 182 KVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEA 241

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             + + M+  G  P+ + Y+ ++ G C  G + R  EL+  M       DV     +I+ 
Sbjct: 242 EEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDM 301

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            CK K+++ A  +  EM   G  P VVTYN
Sbjct: 302 LCKAKKVDDAHKVLEEMSKIGAVPDVVTYN 331



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 157/299 (52%), Gaps = 8/299 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PD+ TY+ +I+  CK G+V+    ++  +      PD  T+T ++  LC   ++ EA
Sbjct: 5   GFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEA 64

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             LF K+   GC  +   Y  LINGLC+  +   A  L EEMA+   E      PD ITY
Sbjct: 65  DELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYE------PDNITY 118

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF--IEM 224
           +TI  GLC+ G V +AK+ F  M     +PDVV Y  L+          EA  LF  ++M
Sbjct: 119 NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDM 178

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
            D+ V P+++T+N +++  C+  K DEA +L + +I  G  PD   YN+++ G      +
Sbjct: 179 ADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNM 238

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + A+E+F  M  +GC  +  +Y I+++G+C+   +   L LY EM  K   P V+  N 
Sbjct: 239 DEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNA 297



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 146/293 (49%), Gaps = 8/293 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V   N +   L K K  D    + + ++ IG  PD+ TYNIL++  CK   V     +
Sbjct: 290 PDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHEL 349

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++ +   PD V+++ ++ GLC  +++ +A  LF ++      PDV T+  L++GLC+
Sbjct: 350 FSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCK 409

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L + M+  N        PD +T +T+  GLC++   D+A  LF  M ++  
Sbjct: 410 AGKLDEAKDLLDVMSEHN------VLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGT 463

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMM--DQGVQPNVVTFNVIMNELCKNGKMDEA 252
             DV+ +  ++ G C      +A   F  M+  D    P+VVT+  ++N L + G++D+A
Sbjct: 464 VADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQA 523

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
               + M   G  PD   YNTLM+G    GR  +A  L  +M+  G + D F 
Sbjct: 524 VDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCFK 576



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 85/154 (55%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M ++   PDVVTY+++I G C      EA  +  EM ++GV P+V T+ +I++ LC+ GK
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +DEA  L   MI+ G   +   YN L++G C    + RA +L   M S G   D  +Y  
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +++G C+  ++  A   +  M S+G  P VV YN
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYN 154



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 75/120 (62%)

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M ++G +P+VVT++ I++ LCK GK+ EA  ++E M + GV PD + Y  ++D  C  G+
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V+ A ELF  M   GC  +  +Y  LING CK++ IE A  L  EM SKG  P  +TYNT
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 3/148 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M   +  P  V    ++ G L ++K  D  + LF+ +   G   D+  +NI++   
Sbjct: 419 LLDVMSEHNVLPDGVTCTTLMHG-LCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGL 477

Query: 63  CKMGRVSPGFVVLGRILRSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           C+ G+++   +    +++S   F+PD VT+T+L+  L    R+ +A   F ++   GC P
Sbjct: 478 CREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAP 537

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEM 148
           D   Y TL+NGL + G  I A  L + M
Sbjct: 538 DYVAYNTLMNGLRKQGRHIQADRLTQAM 565


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 185/329 (56%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP VC FN+L   L K    +    LF  +   GL P + ++N LIN +CK G +  GF 
Sbjct: 222 PPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFR 281

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   ++ +   PD  T++ LI GLC E ++ +A  LF ++   G  P+  T+TTLING C
Sbjct: 282 LKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHC 341

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            TG   + + ++++M       GV  KPD ITY+T+ +GLCK G + +AK+L ++M    
Sbjct: 342 VTGRADLGMEIYQQMLRK----GV--KPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG 395

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT LI G C   D   A  +  EM+ +G++ + V F  +++  C+ G++ EA 
Sbjct: 396 LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAE 455

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R L  M++ G++PD + Y  ++ GFC  G V    +L   M+ +G +  V +Y +L+NG 
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK  +++ A  L   ML+ G+ P  +TYN
Sbjct: 516 CKQGQMKNANMLLDAMLNLGVVPDDITYN 544



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 153/296 (51%), Gaps = 6/296 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K+ + D    L + +    +FPD++TY++LIN  CK G++     +
Sbjct: 258 PTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKL 317

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+ VTFT+LI G C   R      ++ ++   G KPDV TY TLINGLC+
Sbjct: 318 FLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCK 377

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  EM           KPD  TY+ + DG CKEG ++ A E+  +M  E I
Sbjct: 378 VGDLREAKKLVIEMTQRG------LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGI 431

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V +T+LI GFC      EA+    EM++ G++P+  T+ ++++  CK G +    +
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFK 491

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           LL+ M   G  P    YN L++G C  G++  A  L  +M + G + D  +Y IL+
Sbjct: 492 LLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILL 547



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/262 (36%), Positives = 136/262 (51%), Gaps = 6/262 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++++L   L K    D    LF  +   GL P+  T+  LIN  C  GR   G  +
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++LR    PD +T+ +LI GLC    + EA  L  ++   G KPD FTYT LI+G C+
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK 412

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL + +EM     E       D + ++ +  G C+EG V +A+    +M +  I
Sbjct: 413 EGDLESALEIRKEMVKEGIEL------DNVAFTALISGFCREGQVIEAERTLREMLEAGI 466

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TYT +I GFC   D      L  EM   G  P VVT+NV++N LCK G+M  A+ 
Sbjct: 467 KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANM 526

Query: 255 LLELMIQIGVRPDASVYNTLMD 276
           LL+ M+ +GV PD   YN L++
Sbjct: 527 LLDAMLNLGVVPDDITYNILLE 548



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           A A + ++   G  PDV  +  L++ LC+      A  LF E+    G+ G+  +P  ++
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEI----GKRGL--RPTVVS 262

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++T+ +G CK G +D+   L   M +  + PDV TY+ LI G C     ++A  LF+EM 
Sbjct: 263 FNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMC 322

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D+G+ PN VTF  ++N  C  G+ D    + + M++ GV+PD   YNTL++G C  G + 
Sbjct: 323 DRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLR 382

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            AK+L + M   G   D F+Y +LI+G CK  ++E AL +  EM+ +GI 
Sbjct: 383 EAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIE 432



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 161/339 (47%), Gaps = 32/339 (9%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHY---DTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           R+ PS  P    N L   +  N H     ++LS FK L++       + + + I+ +C M
Sbjct: 60  RILPSLTP----NHLIDLINLNPHSLSPPSLLSFFKWLST------QHHFRLSIHSYCTM 109

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK-LRAFGCKPDVFT 124
                 F+   ++L            SL++ + +      A+++FT  L A G       
Sbjct: 110 TH----FLCTHKMLSEA--------QSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLV 157

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           ++ L+N    +G+   A+  F  +   N +          +   + D L K      A  
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFH------SCGYLFDRLMKLNLTSPAWA 211

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
            + ++ D    PDV  +  L+   C  +  NEA+ LF E+  +G++P VV+FN ++N  C
Sbjct: 212 FYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYC 271

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K+G +D+  RL   M++  V PD   Y+ L++G C  G+++ A +LF+ M   G + +  
Sbjct: 272 KSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDV 331

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  LING+C     +  + +Y +ML KG++P V+TYNT
Sbjct: 332 TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNT 370


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  217 bits (553), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 191/359 (53%), Gaps = 29/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++  +   L K + +D   ++F+++   G+ P++ TYN LI+ +  +G+      
Sbjct: 235 PPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVR 294

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      P+  T+ SL+  LC   R  EA   F  +   G KP V TY  +++G  
Sbjct: 295 MLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYA 354

Query: 134 RTG-----HTIVAL----------NLFEEMANGNGEFGVVCK--------------PDAI 164
             G     H ++ L          ++F    +   + G++ K              PDA+
Sbjct: 355 TKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAV 414

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           +Y  + D LCK G VD A+  F +M +E + PD+V ++SL+ G C  + W + + LF EM
Sbjct: 415 SYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEM 474

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           ++ G+ PN+V FN I+  LCK G++ E  RL++ +  +GVRPD   YNTL+DG CL G +
Sbjct: 475 LNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTI 534

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + A +L   M S G   D FSY  L++GYCK   I+ A S + +MLS GI P VVTYNT
Sbjct: 535 DEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNT 593



 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 186/351 (52%), Gaps = 15/351 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNK-------HYDTVLSLFKRLNS---IGLFPDL 52
           +FD +L  H  P  V +FN L   ++++          +TV+SLF R+     I + P+ 
Sbjct: 36  LFDELLP-HARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIKVAPNR 94

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA-ALFT 111
            TY+ILI CFC+MG +  GF   G IL++ +  D +    L+ GLC   R+ EA   L  
Sbjct: 95  CTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQ 154

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
           ++   GC PD  +Y  L+ GLC       AL L   MA+        C P+ ++YST+ +
Sbjct: 155 RMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQV---WSCPPNVVSYSTVIN 211

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           G   EG VDK   LFL+M D  I PDVVTYT++I G C A  ++ A+ +F +M+D GV+P
Sbjct: 212 GFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKP 271

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N+ T+N +++     GK  E  R+LE M   G +P+   Y +L++  C  GR   A+  F
Sbjct: 272 NIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFF 331

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            SM   G    V +YGI+++GY     +     L + M++ GI P    +N
Sbjct: 332 DSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFN 382



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 167/322 (51%), Gaps = 6/322 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FNI F   AK    D  + +F ++   GL PD  +Y  LI+  CK+GRV    V   +++
Sbjct: 381 FNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 440

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
               TPD V F+SL+ GLC   +  +   LF ++   G  P++  + T++  LC+ G  +
Sbjct: 441 NEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVM 500

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
               L + +       GV  +PD I+Y+T+ DG C  G +D+A +L   M    + PD  
Sbjct: 501 EGQRLVDSIEC----MGV--RPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSF 554

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           +Y +L+ G+C A   + A   F +M+  G+ P VVT+N I++ L +  +  EA  L   M
Sbjct: 555 SYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNM 614

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           I  G + D   YN +++G C +  V+ A ++F ++ S G   ++ ++ I+I    K    
Sbjct: 615 INSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRK 674

Query: 320 EGALSLYSEMLSKGIRPTVVTY 341
           E A+ L++ + + G+   VVTY
Sbjct: 675 EDAMDLFAAIPANGLVQNVVTY 696



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 173/421 (41%), Gaps = 96/421 (22%)

Query: 15  PPVCSFNILFG--CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P V S+N L    CLA     D    L + + S+GL PD ++YN L++ +CK GR+   +
Sbjct: 516 PDVISYNTLIDGHCLAGT--IDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAY 573

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT----- 127
               ++L +  TP  VT+ +++ GL    R  EA  L+  +   G K D++TY       
Sbjct: 574 SHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGL 633

Query: 128 ------------------------------LINGLCRTGHTIVALNLFEEM-ANG----- 151
                                         +I  L + G    A++LF  + ANG     
Sbjct: 634 CKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNV 693

Query: 152 -------------------NGEFGVVCK----PDAITYSTITDGLCKEGFVDKAKELFLK 188
                              +  F  + K    P++   + +   L   G + +A     K
Sbjct: 694 VTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSK 753

Query: 189 MKDENINPDVVTYTSLIRGFCY----------------------------ANDWNEAKCL 220
           + + N + +  T + LI  F                              A   ++A  L
Sbjct: 754 LDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSL 813

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           F EM+ +G+ P+VVT+N I++ L + G+  EA  L   MI    + +   YN +++G C 
Sbjct: 814 FREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCK 873

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +  V+ A ++F S+ S G   ++ ++ I+I    K    E A+ L++ + + G+ P VVT
Sbjct: 874 SNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVT 933

Query: 341 Y 341
           Y
Sbjct: 934 Y 934



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 152/339 (44%), Gaps = 22/339 (6%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++NI+   L K+   D  + +F+ L S GL  ++ T+NI+I    K GR      +  
Sbjct: 623 IYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFA 682

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            I  +    + VT+  +++ L  E  + E  +LF+ +   G  P+      L+  L   G
Sbjct: 683 AIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRG 742

Query: 137 HTIVALNLFEEMANGN-----------------GEFGVVCKPDAITYSTITDG-----LC 174
               A     ++   N                  E+    K     Y  + +      + 
Sbjct: 743 DISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIK 802

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K   +D A  LF +M  + + PDVVTY +++ G      ++EAK L++ M++   Q N+ 
Sbjct: 803 KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIY 862

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+N+I+N LCK+  +DEA ++ + +   G++ +   +N ++      GR   A +LF ++
Sbjct: 863 TYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAI 922

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
            +NG + DV +Y ++     +   +E    L+  M   G
Sbjct: 923 PANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSG 961



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 148/344 (43%), Gaps = 34/344 (9%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + +FNI+ G L K    +  + LF  + + GL  ++ TY +++    + G +     +  
Sbjct: 658 IITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFS 717

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN------ 130
            + ++   P++    +L++ L     I  A A  +KL       +  T + LI+      
Sbjct: 718 AMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDE 777

Query: 131 ---------------------GLCRTGHTIV-ALNLFEEMANGNGEFGVVCKPDAITYST 168
                                 L +    I  A +LF EM            PD +TY+T
Sbjct: 778 YQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSLFREMLMKG------LTPDVVTYNT 831

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           I  GL + G   +AKEL+L M +     ++ TY  ++ G C +N  +EA  +F  +  +G
Sbjct: 832 ILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKG 891

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           +Q N++TFN+++  L K G+ ++A  L   +   G+ PD   Y  + +     G +    
Sbjct: 892 LQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFD 951

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            LF++ME +G   D      L+    +  +I  A +  S++  K
Sbjct: 952 GLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEK 995



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 18/232 (7%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP----DAITYSTITDGLCK 175
           P+  TY+ LI   CR GH          + +G   FG++ K     D I  + + +GLC 
Sbjct: 92  PNRCTYSILIGCFCRMGH----------LEHGFAAFGLILKTGWRMDHIVINQLLNGLCD 141

Query: 176 EGFVDKAKELFL-KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ---P 231
              V +A ++ L +M +    PD V+Y  L++G C      EA  L   M D  V    P
Sbjct: 142 GKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPP 201

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           NVV+++ ++N     G++D+   L   M+  G+ PD   Y T++DG C     +RA+ +F
Sbjct: 202 NVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVF 261

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M  NG   ++ +Y  LI+GY    + +  + +  EM + G +P   TY +
Sbjct: 262 QQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGS 313



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 140/337 (41%), Gaps = 34/337 (10%)

Query: 17   VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
            V ++ ++   L +    +   SLF  +   G  P+    N L+      G +S     L 
Sbjct: 693  VVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLS 752

Query: 77   RILRSCFTPDAVTFTSLIKGLCAES----------------------------RIMEAAA 108
            ++    F+ +A T + LI    ++                             RI +A +
Sbjct: 753  KLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYS 812

Query: 109  LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
            LF ++   G  PDV TY T+++GL +TG    A  L+  M N   +  +       TY+ 
Sbjct: 813  LFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIY------TYNI 866

Query: 169  ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
            I +GLCK   VD+A ++F  +  + +  +++T+  +I          +A  LF  +   G
Sbjct: 867  ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANG 926

Query: 229  VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
            + P+VVT+ ++   L + G ++E   L   M + G   D+ + N L+      G ++RA 
Sbjct: 927  LVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAG 986

Query: 289  ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
                 ++      +  +   LI+ + + +    A SL
Sbjct: 987  AYLSKLDEKNFSLEASTTSELISLFSRGEYQHHAKSL 1023



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 19/226 (8%)

Query: 1    FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            + +F  ML M    P V ++N +   L +   +     L+  + +     ++YTYNI++N
Sbjct: 811  YSLFREML-MKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILN 869

Query: 61   CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              CK   V   F +   +       + +TF  +I  L    R  +A  LF  + A G  P
Sbjct: 870  GLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVP 929

Query: 121  DVFTYTTLINGLCRTGHTIVALNLFEE--MANGNGEFGVVCKP----DAITYSTITDGLC 174
            DV TY             +VA NL EE  +   +G F  + K     D+   + +   L 
Sbjct: 930  DVVTY------------RLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLL 977

Query: 175  KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
            + G + +A     K+ ++N + +  T + LI  F      + AK L
Sbjct: 978  QRGDISRAGAYLSKLDEKNFSLEASTTSELISLFSRGEYQHHAKSL 1023


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  217 bits (553), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 181/342 (52%), Gaps = 9/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +F  +L    +P  V   +++ G C+A +  +D    LF  +N  G  P   TYN++I+ 
Sbjct: 32  LFQKLLHSGVTPSTVAYTSLIHGLCMANS--FDDARELFADMNRRGCPPSPVTYNVMIDA 89

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +     ++ +++     PD VT+ +++ GLC  SR+ EA  LF ++   GC P+
Sbjct: 90  SCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPN 149

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             ++ T+I GLC+      A  +F EM   +        PD+ +Y  + DGL K G +++
Sbjct: 150 RRSHNTIILGLCQQSKIDQACQVFHEMEAKD------IPPDSWSYGILIDGLAKAGKLNE 203

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A +LF +M D  I P  VTY  +I G C A   +EA  LF  M  +G +P+  TFN++++
Sbjct: 204 AYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILID 263

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK GK+DEA RLL+ M   G  PD   Y+TL+ G C   RV+ A+ L   M    C  
Sbjct: 264 AHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKP 323

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            V +   LI+G CK   I+ A  +   M+S G  P VVTYNT
Sbjct: 324 TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNT 365



 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 178/341 (52%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M R+  +P       I+ G L +    D    +F  + +  + PD ++Y ILI+  
Sbjct: 137 LFNEMERLGCTPNRRSHNTIILG-LCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGL 195

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G+++  + +  R+L S  TP AVT+  +I G+C    + EA  LF  +R+ GC+P  
Sbjct: 196 AKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSR 255

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FT+  LI+  C+ G    A  L + M + +G       PD +TYST+  GLC    VD A
Sbjct: 256 FTFNILIDAHCKRGKLDEAFRLLKRMTD-DGHV-----PDVVTYSTLISGLCSIARVDDA 309

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + L   M      P VVT  +LI G C A    EA+ +   M+  G  P+VVT+N +++ 
Sbjct: 310 RHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG 369

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ G+ + A  LL  M+  G+ P+   Y  L+ G C   R+  A  +F  M+S+GC  +
Sbjct: 370 HCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPN 429

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +F+Y  LI G+C   +++G L L+ EM+  GI P  V Y T
Sbjct: 430 LFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGT 470



 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 167/301 (55%), Gaps = 6/301 (1%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           +N   + PD ++Y ILI+   K G+++    +  ++L S  TP  V +TSLI GLC  + 
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
             +A  LF  +   GC P   TY  +I+  C+ G    A +L ++M     E G V  PD
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMI----EDGHV--PD 114

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TY+T+ DGLCK   V++A  LF +M+     P+  ++ ++I G C  +  ++A  +F 
Sbjct: 115 VVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFH 174

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM  + + P+  ++ ++++ L K GK++EA +L + M+  G+ P A  YN ++ G CL  
Sbjct: 175 EMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAY 234

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++ A ELF SM S GC    F++ ILI+ +CK  +++ A  L   M   G  P VVTY+
Sbjct: 235 TLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYS 294

Query: 343 T 343
           T
Sbjct: 295 T 295



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 161/363 (44%), Gaps = 79/363 (21%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +F  ML    +P  V ++N++   +      D  L LFK + S G  P  +T+NILI+
Sbjct: 205 YKLFQRMLDSGITPSAV-TYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILID 263

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G++   F +L R+      PD VT+++LI GLC+ +R+ +A  L   +    CKP
Sbjct: 264 AHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKP 323

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            V T  TLI+GLC+ G    A  + + M + +G+      PD +TY+T+  G C+ G  +
Sbjct: 324 TVVTQNTLIHGLCKAGRIKEAREVLDAMVS-SGQ-----SPDVVTYNTLVHGHCRAGQTE 377

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA----------KC----------- 219
           +A+EL   M    + P+VVTYT+L+ G C AN   EA           C           
Sbjct: 378 RARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALI 437

Query: 220 --------------LFIEMMDQGVQPNVVTFNVIMNELCKNGKM---------------- 249
                         LF EM+  G+ P+ V +  +  ELCK+G+                 
Sbjct: 438 LGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRS 497

Query: 250 ----DEASR-----LLEL------------MIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
               DE  R     LLE             M++ G  P      +L+ G C +G+   A+
Sbjct: 498 EAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEAR 557

Query: 289 ELF 291
            + 
Sbjct: 558 AVL 560



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 118/255 (46%), Gaps = 18/255 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N L   L K         +   + S G  PD+ TYN L++  C+ G+      +
Sbjct: 323 PTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAREL 382

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+ VT+T+L+ GLC  +R+ EA  +F ++++ GC P++FTYT LI G C 
Sbjct: 383 LSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCS 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC---KPDAITYSTITDGLCKEGFVDKAKELFLK--- 188
            G     L LF EM         VC    PD + Y T+   LCK G   +A E+  +   
Sbjct: 443 AGQVDGGLKLFGEM---------VCAGISPDHVVYGTLAAELCKSGRSARALEILREGRE 493

Query: 189 -MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            ++ E    +V  Y   + G   A     A     +M+  G  P       ++  LCK+G
Sbjct: 494 SLRSEAWGDEV--YRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSG 551

Query: 248 KMDEASRLLELMIQI 262
           +  EA  +LE ++ +
Sbjct: 552 QGGEARAVLEEIMDL 566


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 180/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F+     L +N H D  L +   +   G  PD+YTY+ +INC C  G +     +
Sbjct: 299 PDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGI 358

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + +++ S   PD  TF +LI  LC E+++ EA  L  +L   G  P+V+T+  LIN LC+
Sbjct: 359 VNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCK 418

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +A+ LFEEM +        C PD +TY+ + D LC  G + KA +L  +M+    
Sbjct: 419 VGDPHLAVRLFEEMKSSG------CTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGC 472

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               VTY ++I G C      EA+ +F +M   G+  N +TFN +++ LC   ++D+A+ 
Sbjct: 473 PQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAE 532

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ MI  G++P+   YN+++  +C  G +++A ++  +M +NG   DV +Y  LING C
Sbjct: 533 LVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLC 592

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K +  + AL L   M  KG++PT   YN
Sbjct: 593 KARRTQAALKLLRGMRMKGMKPTPKAYN 620



 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 175/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L     +    +  L L  R++ +G  P   T N+LIN +CK+GRV      
Sbjct: 229 PDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGY 288

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + + +   F PD VTF++ + GLC    +  A  +   +   GC+PDV+TY+T+IN LC 
Sbjct: 289 IQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCN 348

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +  +M +        C PD  T++T+   LC E  +++A +L  ++  + +
Sbjct: 349 NGELEEAKGIVNQMVDSG------CLPDTTTFNTLIVALCTENQLEEALDLARELTVKGL 402

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+V T+  LI   C   D + A  LF EM   G  P+ VT+N++++ LC +GK+ +A  
Sbjct: 403 SPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALD 462

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M   G       YNT++DG C   R+  A+E+F  M+  G  R+  ++  LI+G C
Sbjct: 463 LLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLC 522

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             + I+ A  L  +M+S+G++P  VTYN+
Sbjct: 523 NAERIDDAAELVDQMISEGLQPNNVTYNS 551



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN +   L + +   T + + + ++S  + PD  T+  L+  F + G +     +
Sbjct: 194 PDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRL 253

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+     +P +VT   LI G C   R+ +A     +  A G +PD  T++T +NGLC+
Sbjct: 254 KARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQ 313

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            GH   AL +   M          C+PD  TYST+ + LC  G +++AK +  +M D   
Sbjct: 314 NGHVDHALKVLGLMLQEG------CEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGC 367

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  T+ +LI   C  N   EA  L  E+  +G+ PNV TFN+++N LCK G    A R
Sbjct: 368 LPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVR 427

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M   G  PD   YN L+D  C +G++ +A +L   ME +GC +   +Y  +I+G C
Sbjct: 428 LFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLC 487

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K + IE A  ++ +M   GI    +T+NT
Sbjct: 488 KRRRIEEAEEVFDQMDVTGIGRNAITFNT 516



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 156/329 (47%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L      +  L L + L   GL P++YT+NILIN  CK+G       +
Sbjct: 369 PDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRL 428

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S  TPD VT+  LI  LC+  ++ +A  L  ++   GC     TY T+I+GLC+
Sbjct: 429 FEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCK 488

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                 A  +F++M   G G        +AIT++T+ DGLC    +D A EL  +M  E 
Sbjct: 489 RRRIEEAEEVFDQMDVTGIGR-------NAITFNTLIDGLCNAERIDDAAELVDQMISEG 541

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+ VTY S++  +C   + ++A  +   M   G + +VVT+  ++N LCK  +   A 
Sbjct: 542 LQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAAL 601

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +LL  M   G++P    YN ++           A  LF  M   G   D F+Y I+  G 
Sbjct: 602 KLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGL 661

Query: 314 CK-NKEIEGALSLYSEMLSKGIRPTVVTY 341
           C+    I+ A     EM   G  P   ++
Sbjct: 662 CRGGGPIKEAFDFLVEMADNGFIPEFSSF 690



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 135/299 (45%), Gaps = 9/299 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           GL P    Y  +I      G      V++G + R           S I G  A  ++ + 
Sbjct: 85  GLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFI-GSYARLQLFDD 143

Query: 107 A--ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           A   +  +L  FG + +   Y  L+  L       +  + + EM++   E      PD +
Sbjct: 144 AFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIE------PDVV 197

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T++T+ D LC+      A  +  +M   ++ PD  T+T+L+ GF        A  L   M
Sbjct: 198 TFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARM 257

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
            + G  P  VT NV++N  CK G++ +A   ++  I  G  PD   ++T ++G C  G V
Sbjct: 258 SEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHV 317

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + A ++   M   GC  DV++Y  +IN  C N E+E A  + ++M+  G  P   T+NT
Sbjct: 318 DHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNT 376



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 114/261 (43%), Gaps = 9/261 (3%)

Query: 4   FDYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            D +  M  S  P    ++N +   L K +  +    +F +++  G+  +  T+N LI+ 
Sbjct: 461 LDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDG 520

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C   R+     ++ +++     P+ VT+ S++   C +  I +AA +   + A G + D
Sbjct: 521 LCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVD 580

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V TY TLINGLC+   T  AL L   M           KP    Y+ +   L +      
Sbjct: 581 VVTYATLINGLCKARRTQAALKLLRGMRMKG------MKPTPKAYNPVIQSLFRGNNGRD 634

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           A  LF +M +    PD  TY  + RG C       EA    +EM D G  P   +F ++ 
Sbjct: 635 ALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLA 694

Query: 241 NELCKNGKMDEASRLLELMIQ 261
             L   G  D   R +EL+++
Sbjct: 695 EGLLNLGMDDYLIRAIELIVE 715


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 196/357 (54%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  F+ L   +AK K Y+ V+SLF+ +  +G+  DLY+++ LI+CFC+  R+S     
Sbjct: 71  PSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSC 130

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG++++  F P  VTF SL+ G C  +RI EA +L  ++   G +P+V  Y T+I+ LC 
Sbjct: 131 LGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 190

Query: 135 TGHTIVALNLFEEMAN------------------GNGEFGVVCK-----------PDAIT 165
                 AL++   M                     +G++GV  +           PD IT
Sbjct: 191 NRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVIT 250

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +S + D   KEG + +AK+ + +M   +++P++VTY SLI G C     +EAK +   M+
Sbjct: 251 FSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMV 310

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            +G  PN VT+N ++N  CK+ ++D+A ++L +M   GV  D   YNTL  G+C  G+ N
Sbjct: 311 SKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFN 370

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A+++   M S G + D++++ +L++G C++ +IE AL    ++        ++TYN
Sbjct: 371 AAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYN 427



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 162/315 (51%), Gaps = 6/315 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L +N+  DT L +   +  +G+ PD+ TYN LI      G+      +
Sbjct: 176 PNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARI 235

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R    PD +TF+++I     E +++EA   + ++      P++ TY +LINGLC 
Sbjct: 236 LSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCI 295

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +   M +  G F     P+A+TY+T+ +G CK   VD A ++   M  + +
Sbjct: 296 HGLLDEAKKVLNFMVS-KGFF-----PNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGV 349

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + D  TY +L +G+C A  +N A+ +   M+  GV P++ TFN++++ LC++GK+++A  
Sbjct: 350 DGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALV 409

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            LE + +         YN ++ G C   +V  A  LF S+   G   DV +Y  ++ G  
Sbjct: 410 KLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLR 469

Query: 315 KNKEIEGALSLYSEM 329
           + +    A  LY +M
Sbjct: 470 RKRLWLEAHELYRKM 484



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 31/223 (13%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           +D M++     P + ++N L   L  +   D    +   + S G FP+  TYN L+N +C
Sbjct: 271 YDEMIQ-RSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYC 329

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K  RV     +L  +       D  T+ +L +G C   +   A  +  ++ + G  PD++
Sbjct: 330 KSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIY 389

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV---------CK-------------- 160
           T+  L++GLC  G    AL   E++       G++         CK              
Sbjct: 390 TFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSL 449

Query: 161 ------PDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINP 196
                 PD ITY+T+  GL ++    +A EL+ KM KD+ + P
Sbjct: 450 ALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKMKKDDGLMP 492



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 72/143 (50%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y   +R   ++  +N+A  LF +M +    P++V F+ ++  + K  K +    L   + 
Sbjct: 41  YRERLRSGLHSIKFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIE 100

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
            +G+  D   ++TL+D FC   R++ A      M   G    + ++G L+NG+C    I+
Sbjct: 101 ILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQ 160

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A+SL  +++  G  P VV YNT
Sbjct: 161 EAMSLVDQIVGLGYEPNVVIYNT 183


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 180/342 (52%), Gaps = 9/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +F  +L    +P  V   +++ G C+A +  +D    LF  +N  G  P   TYN++I+ 
Sbjct: 32  LFQKLLHSGVTPSTVAYTSLIHGLCMANS--FDDARELFADMNRRGCPPSPVTYNVIIDA 89

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +     ++ +++     PD VT+ +++ GLC   R+ EA  LF ++   GC P+
Sbjct: 90  SCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPN 149

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             ++ T+I GLC+      A  +F EM   +        PD+ +Y  + DGL K G +++
Sbjct: 150 RRSHNTIILGLCQQSKIDQACQVFHEMEARD------IPPDSWSYGILIDGLAKAGKLNE 203

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A +LF +M D  I P  VTY  +I G C A   +EA  LF  M  +G +P+  TFN++++
Sbjct: 204 AYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILID 263

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK GKMDEA RLL+ M   G  PD   Y+TL+ G C   RV+ A+ L   M    C  
Sbjct: 264 AHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKP 323

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            V +   LI+G CK   I+ A  +   M+S G  P VVTYNT
Sbjct: 324 TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNT 365



 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 178/341 (52%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M R+  +P       I+ G L +    D    +F  + +  + PD ++Y ILI+  
Sbjct: 137 LFNEMERLGCTPNRRSHNTIILG-LCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGL 195

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G+++  + +  R+L S  TP AVT+  +I G+C    + EA  LF  +R+ GC+P  
Sbjct: 196 AKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSR 255

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FT+  LI+  C+ G    A  L + M + +G       PD +TYST+  GLC    VD A
Sbjct: 256 FTFNILIDAHCKRGKMDEAFRLLKRMTD-DGHV-----PDVVTYSTLISGLCSIARVDDA 309

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + L   M      P VVT  +LI G C A    EA+ +   M+  G  P+VVT+N +++ 
Sbjct: 310 RHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG 369

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ G+ + A  LL  M+  G+ P+   Y  L+ G C   R+  A  +F  M+S+GC  +
Sbjct: 370 HCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPN 429

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +F+Y  LI G+C   +++G L L+ EM+  GI P  V Y T
Sbjct: 430 LFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGT 470



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 167/301 (55%), Gaps = 6/301 (1%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           +N   + PD ++Y ILI+   K G+++    +  ++L S  TP  V +TSLI GLC  + 
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
             +A  LF  +   GC P   TY  +I+  C+ G    A +L ++M     E G V  PD
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMI----EDGHV--PD 114

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TY+T+ DGLCK G V++A  LF +M+     P+  ++ ++I G C  +  ++A  +F 
Sbjct: 115 VVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFH 174

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM  + + P+  ++ ++++ L K GK++EA +L   M+  G+ P A  YN ++ G CL  
Sbjct: 175 EMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAY 234

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++ A ELF SM S GC    F++ ILI+ +CK  +++ A  L   M   G  P VVTY+
Sbjct: 235 TLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYS 294

Query: 343 T 343
           T
Sbjct: 295 T 295



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 140/315 (44%), Gaps = 45/315 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FNIL     K    D    L KR+   G  PD+ TY+ LI+  C + RV     +
Sbjct: 253 PSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 312

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    P  VT  +LI GLC   RI EA  +   + + G  PDV TY TL++G CR
Sbjct: 313 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 372

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G T  A  L  +M A G         P+ +TY+ +  GLCK   + +A  +F +MK   
Sbjct: 373 AGQTERARELLSDMVARG-------LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSG 425

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG------ 247
             P++ TYT+LI GFC A   +    LF EM+  G+ P+ V +  +  ELCK+G      
Sbjct: 426 CAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARAL 485

Query: 248 -------------------------------KMDEASRLLELMIQIGVRPDASVYNTLMD 276
                                          KM+ A   +  M++ G  P      +L+ 
Sbjct: 486 EILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVA 545

Query: 277 GFCLTGRVNRAKELF 291
           G C +G+   A+ + 
Sbjct: 546 GLCKSGQGGEARAVL 560



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 118/255 (46%), Gaps = 18/255 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N L   L K         +   + S G  PD+ TYN L++  C+ G+      +
Sbjct: 323 PTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAREL 382

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+ VT+T+L+ GLC  +R+ EA  +F ++++ GC P++FTYT LI G C 
Sbjct: 383 LSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCS 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC---KPDAITYSTITDGLCKEGFVDKAKELFLK--- 188
            G     L LF EM         VC    PD + Y T+   LCK G   +A E+  +   
Sbjct: 443 AGQVDGGLKLFGEM---------VCAGISPDHVVYGTLAAELCKSGRSARALEILREGRE 493

Query: 189 -MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            ++ E    +V  Y   + G   A     A     +M+  G  P       ++  LCK+G
Sbjct: 494 SLRSEAWGDEV--YRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSG 551

Query: 248 KMDEASRLLELMIQI 262
           +  EA  +LE ++ +
Sbjct: 552 QGGEARAVLEEIMDL 566


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 194/372 (52%), Gaps = 42/372 (11%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML  +P PP +  FN L   + + K Y+TV+SLFK +   G+  ++ T +ILINCFC
Sbjct: 28  FNRMLDRNPQPP-IIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFC 86

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC----- 118
            +  V  GF V G+ L+  F PD V FT+LI G+C   +   AA L  ++   GC     
Sbjct: 87  FLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVV 146

Query: 119 ------------------------------KPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
                                         KPDV++Y+  ING C+      A+ LF+EM
Sbjct: 147 TCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEM 206

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           ++     GVV  P+A+TY+T+   LC+      A+ LF KM    ++PD++ Y++L+ GF
Sbjct: 207 SHR----GVV--PNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGF 260

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C   + +E   LF EM  + V+P++V + +I+N +C++ K+ +A  +L  +I  G++PD 
Sbjct: 261 CKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDV 320

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y  L+DG C  G +  A  LF  ME +GCM    SY +L+ G  ++ +    + L  E
Sbjct: 321 HTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHE 380

Query: 329 MLSKGIRPTVVT 340
           M  +G     VT
Sbjct: 381 MADRGFYADAVT 392



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 131/262 (50%), Gaps = 6/262 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N L          D V  +F  + S GL PD+Y+Y+I IN +CK+ ++     +
Sbjct: 143 PDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMEL 202

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+AVT+ +LIK LC   R  +A  LF K+ A G  PD+  Y+TL++G C+
Sbjct: 203 FDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCK 262

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+    L LF+EM         + KPD + Y+ I +G+C+   V  AKE+  ++  E +
Sbjct: 263 QGNLDEMLVLFQEMQRR------LVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGL 316

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TYT+L+ G C      EA  LF +M + G  P   ++NV++    ++       +
Sbjct: 317 KPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQ 376

Query: 255 LLELMIQIGVRPDASVYNTLMD 276
           L+  M   G   DA     L D
Sbjct: 377 LIHEMADRGFYADAVTRTFLKD 398



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 145/313 (46%), Gaps = 41/313 (13%)

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G +        R+L     P  + F  L+  +    +     +LF ++   G K +V T 
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTL 78

Query: 126 TTLIN-----------------------------------GLCRTGHTIVALNLFEEMAN 150
           + LIN                                   G+CR G T +A  L +EM  
Sbjct: 79  SILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGL 138

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
                 V C PD +T +++  G C +G +DK +++F  M  + + PDV +Y+  I G+C 
Sbjct: 139 ------VGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCK 192

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
               +EA  LF EM  +GV PN VT+N ++  LC+  +  +A  L   M   G+ PD   
Sbjct: 193 VEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILA 252

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           Y+TL+DGFC  G ++    LF  M+      D+  Y I+ING C++++++ A  + S ++
Sbjct: 253 YSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLI 312

Query: 331 SKGIRPTVVTYNT 343
            +G++P V TY  
Sbjct: 313 VEGLKPDVHTYTA 325



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ L     K  + D +L LF+ +    + PDL  Y I+IN  C+  +V     V
Sbjct: 248 PDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEV 307

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R++     PD  T+T+L+ GLC E  I+EA  LF K+   GC P   +Y  L+ G  +
Sbjct: 308 LSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQ 367

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              T   + L  EMA+  G +      DA+T + + D L
Sbjct: 368 HNDTSTVVQLIHEMAD-RGFYA-----DAVTRTFLKDFL 400



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 70/204 (34%)

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM---------- 259
           Y  + ++A   F  M+D+  QP ++ FN +++ + +  K +    L + M          
Sbjct: 17  YFGNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVC 76

Query: 260 -------------------------IQIGVRPDASVYNTLMD------------------ 276
                                    ++ G +PD  ++ TL+D                  
Sbjct: 77  TLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEM 136

Query: 277 -----------------GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
                            G+C  G++++ +++F  M S G   DV+SY I INGYCK ++I
Sbjct: 137 GLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKI 196

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           + A+ L+ EM  +G+ P  VTYNT
Sbjct: 197 DEAMELFDEMSHRGVVPNAVTYNT 220


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 189/359 (52%), Gaps = 31/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +++ +   L K +      +  +++ + G+ PD +TYN LI  +   G+      
Sbjct: 255 PPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVR 314

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   + R    PD VT   L+  LC   +I EA  +F  +   G  PDVF+Y  ++NG  
Sbjct: 315 VFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYA 374

Query: 134 RTGHTIVALNLFEEMANGNG------EFGVV------------------------CKPDA 163
             G  +   +LF+ M  G+G       F V+                         KPD 
Sbjct: 375 TKGCLVDMTDLFDLML-GDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDV 433

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY+T+   LC+ G +D A E F +M D+ + PD   Y  LI+GFC      +AK L +E
Sbjct: 434 VTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILE 493

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           +M+ G++ ++V F+ I+N LCK G++ +A  + +L + +G  PDA VY+ LMDG+CL G+
Sbjct: 494 IMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGK 553

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +A  +F +M S G   +V  YG L+NGYCK   I+  LSL+ EML KGI+P+ + YN
Sbjct: 554 MEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 612



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 160/313 (51%), Gaps = 10/313 (3%)

Query: 37  LSLFKRLNSIG-----LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFT 91
           ++LF R  S       L P  +TY IL++C  +  R        G++LR+    D +   
Sbjct: 95  VALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIAN 154

Query: 92  SLIKGLCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
            L+KG C   R  EA   L  +    GC PDVF+Y+ L+  LC  G +  A +L   MA 
Sbjct: 155 HLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAE 214

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
           G    G VC PD + Y+T+ D   KEG V+KA +LF +M    I PD+VTY+S++   C 
Sbjct: 215 G----GAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCK 270

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
           A    +A+    +M+++GV P+  T+N ++      G+  EA R+ + M +  + PD   
Sbjct: 271 ARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVT 330

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
            N LM   C  G++  A+++F +M   G   DVFSY I++NGY     +     L+  ML
Sbjct: 331 LNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLML 390

Query: 331 SKGIRPTVVTYNT 343
             GI P + T++ 
Sbjct: 391 GDGIAPDIYTFSV 403



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 173/341 (50%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M  M    P V S+ I+    A       +  LF  +   G+ PD+YT+++LI  +
Sbjct: 350 VFDTMA-MKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAY 408

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +    ++   +      PD VT+T++I  LC   ++ +A   F ++   G  PD 
Sbjct: 409 ANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 468

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           + Y  LI G C  G  + A  L  E+ N NG      + D + +S+I + LCK G +  A
Sbjct: 469 YAYHCLIQGFCTHGSLLKAKELILEIMN-NG-----MRLDIVFFSSIINNLCKLGRIMDA 522

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F    +   +PD V Y+ L+ G+C      +A  +F  M+  G++PNVV +  ++N 
Sbjct: 523 QNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNG 582

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G++DE   L   M+Q G++P   +YN ++DG  + GR   AK  F  M  +G   +
Sbjct: 583 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAIN 642

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y I++ G+ KN+  + A+ L+ E+ +  ++  ++T NT
Sbjct: 643 KCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNT 683



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 165/338 (48%), Gaps = 7/338 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ML      P + +F++L    A     D  + +F  +   G+ PD+ TY  +I   
Sbjct: 385 LFDLMLG-DGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAAL 443

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++G++        +++     PD   +  LI+G C    +++A  L  ++   G + D+
Sbjct: 444 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDI 503

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             ++++IN LC+ G  + A N+F+   N      V   PDA+ YS + DG C  G ++KA
Sbjct: 504 VFFSSIINNLCKLGRIMDAQNIFDLTVN------VGQHPDAVVYSMLMDGYCLVGKMEKA 557

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +F  M    I P+VV Y +L+ G+C     +E   LF EM+ +G++P+ + +N+I++ 
Sbjct: 558 LRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 617

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L   G+   A      M + G+  +   YN ++ GF      + A  LF  + +     D
Sbjct: 618 LFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKID 677

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           + +   +I G  + + +E A  L++ +   G+ P VVT
Sbjct: 678 IITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 715



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 179/425 (42%), Gaps = 102/425 (24%)

Query: 21  NILFGCLAKNKHYDTVLS-LFKRLNSIGLFPDLYTYNILINCFCKMGRV----------- 68
           N L     + K  D  L  L  R   +G  PD+++Y+IL+   C  G+            
Sbjct: 154 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 213

Query: 69  ------SPGFVVL----------GRILRSC----------FTPDAVTFTSLIKGLCAESR 102
                 SP  V            G + ++C            PD VT++S++  LC    
Sbjct: 214 EGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARA 273

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG---------NG 153
           + +A A   ++   G  PD +TY  LI G   TG    A+ +F+EM            N 
Sbjct: 274 MGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNM 333

Query: 154 EFGVVCK--------------------PDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G +CK                    PD  +Y  + +G   +G +    +LF  M  + 
Sbjct: 334 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDG 393

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I PD+ T++ LI+ +      ++A  +F EM D GV+P+VVT+  ++  LC+ GKMD+A 
Sbjct: 394 IAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAM 453

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV--FS------ 305
                MI  GV PD   Y+ L+ GFC  G + +AKEL + + +NG   D+  FS      
Sbjct: 454 EKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNL 513

Query: 306 ---------------------------YGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
                                      Y +L++GYC   ++E AL ++  M+S GI P V
Sbjct: 514 CKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 573

Query: 339 VTYNT 343
           V Y T
Sbjct: 574 VVYGT 578



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 169/342 (49%), Gaps = 15/342 (4%)

Query: 10  MHPSP-----PPVCSFNILFGCL---AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +H +P     P V S++IL   L    K+   D +L +     ++   PD+  Y  +I+C
Sbjct: 174 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPDVVAYTTVIDC 232

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           F K G V+    +   +++    PD VT++S++  LC    + +A A   ++   G  PD
Sbjct: 233 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPD 292

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +TY  LI G   TG    A+ +F+EM   +        PD +T + +   LCK G + +
Sbjct: 293 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS------ILPDVVTLNMLMGSLCKYGKIKE 346

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+++F  M  +  NPDV +Y  ++ G+       +   LF  M+  G+ P++ TF+V++ 
Sbjct: 347 ARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIK 406

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
                G +D+A  +   M   GV+PD   Y T++   C  G+++ A E F  M   G   
Sbjct: 407 AYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAP 466

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D ++Y  LI G+C +  +  A  L  E+++ G+R  +V +++
Sbjct: 467 DKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSS 508



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 106/213 (49%), Gaps = 5/213 (2%)

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C +G  + A+ LF   A+   +   V  P + TY+ + D   +    + A   F ++   
Sbjct: 87  CGSGPAL-AVALFNRAAS-RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRT 144

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDE 251
            +  D++    L++GFC A   +EA  + +    + G  P+V ++++++  LC  GK  +
Sbjct: 145 GLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 204

Query: 252 ASRLLELMIQIGV--RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           A  LL +M + G    PD   Y T++D F   G VN+A +LF  M   G   D+ +Y  +
Sbjct: 205 ADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSV 264

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  CK + +  A +   +M++KG+ P   TYN
Sbjct: 265 VHALCKARAMGKAEAFLRQMVNKGVLPDNWTYN 297


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 177/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N    CL +N H    L +   +   G  PD++TYN +INC  K G +     +
Sbjct: 298 PDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGI 357

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + +++     PD  TF +LI  LC+++R+ EA  L  +L   G  PDV+T+  LIN LC+
Sbjct: 358 VNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCK 417

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   + + LFEEM +        C PD +TY+ + D LC  G +  A +L  +M+    
Sbjct: 418 VGDPHLGIRLFEEMKSSG------CAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGC 471

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               VTY ++I   C      EA+ +F +M   G+  + VTFN +++ LCK  ++D+A+ 
Sbjct: 472 PRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATE 531

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M++ G++P    YN+++  +C  G + +A ++  +M +NG   DV +YG LING C
Sbjct: 532 LIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLC 591

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    + AL L   M  KGIRPT   YN
Sbjct: 592 KAGRTQVALKLLRGMRIKGIRPTPKAYN 619



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 164/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N L   L +     T + + + ++S  + PD  T+  L+  F + G +     V
Sbjct: 193 PDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRV 252

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ +  +P  VT   LI G C   R+ +A     K  A G +PD  TY T ++ LC+
Sbjct: 253 KTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQ 312

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            GH   AL + + M     +      PD  TY+T+ + L K G +D+AK +  +M D   
Sbjct: 313 NGHVSHALKVMDLMLQEGHD------PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGC 366

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  T+ +LI   C  N   EA  L  E+  +G+ P+V TFN+++N LCK G      R
Sbjct: 367 LPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIR 426

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M   G  PD   YN L+D  C  G++  A +L   MESNGC R   +Y  +I+  C
Sbjct: 427 LFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALC 486

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   IE A  ++ +M + GI  + VT+NT
Sbjct: 487 KQMRIEEAEEVFDQMDAHGISRSAVTFNT 515



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 167/333 (50%), Gaps = 6/333 (1%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   +F  L     +    +  L +  ++   G  P   T N+LIN +CKMGRV  
Sbjct: 224 HAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVED 283

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
               + + +   F PD VT+ + +  LC    +  A  +   +   G  PDVFTY T+IN
Sbjct: 284 ALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVIN 343

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
            L + G    A  +  +M +        C PD  T++T+   LC +  +++A +L  ++ 
Sbjct: 344 CLSKNGELDEAKGIVNQMVDRG------CLPDTTTFNTLIVALCSQNRLEEALDLARELT 397

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            + ++PDV T+  LI   C   D +    LF EM   G  P+ VT+N++++ LC  GK+ 
Sbjct: 398 VKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLV 457

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            A  LL+ M   G       YNT++D  C   R+  A+E+F  M+++G  R   ++  LI
Sbjct: 458 NALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLI 517

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G CK K I+ A  L  +M+ +G++P+ +TYN+
Sbjct: 518 DGLCKAKRIDDATELIEQMVKEGLQPSNITYNS 550



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 159/329 (48%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L      +  L L + L   GL PD+YT+NILIN  CK+G    G  +
Sbjct: 368 PDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL 427

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S   PD VT+  LI  LC+  +++ A  L  ++ + GC     TY T+I+ LC+
Sbjct: 428 FEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCK 487

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                 A  +F++M A+G           A+T++T+ DGLCK   +D A EL  +M  E 
Sbjct: 488 QMRIEEAEEVFDQMDAHG-------ISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEG 540

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P  +TY S++  +C   D  +A  +   M   G + +VVT+  ++N LCK G+   A 
Sbjct: 541 LQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVAL 600

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +LL  M   G+RP    YN ++        +  A  LF  M   G   D  +Y I+  G 
Sbjct: 601 KLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGL 660

Query: 314 CK-NKEIEGALSLYSEMLSKGIRPTVVTY 341
           C+    I+ A     EM++KG  P   ++
Sbjct: 661 CRGGGPIKEAFDFLVEMVNKGFMPEFSSF 689



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 7/249 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P    ++N +   L K    +    +F ++++ G+     T+N LI+  CK  R+     
Sbjct: 472 PRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATE 531

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++ ++++    P  +T+ S++   C +  + +AA +   + A G + DV TY TLINGLC
Sbjct: 532 LIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLC 591

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T VAL L   M           +P    Y+ +   L +   +  A  LF +M +  
Sbjct: 592 KAGRTQVALKLLRGMRIKG------IRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVG 645

Query: 194 INPDVVTYTSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
             PD +TY  + RG C       EA    +EM+++G  P   +F ++   L   G  D  
Sbjct: 646 EPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYL 705

Query: 253 SRLLELMIQ 261
              +EL+I+
Sbjct: 706 ISAIELIIE 714



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 113/266 (42%), Gaps = 5/266 (1%)

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           + R  F P    +  +I+ L           L  ++R  G +       + +    R   
Sbjct: 80  LAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRR 139

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A++L     N    FGV  + D   Y+ + + L +   +   + ++ +M D  I PD
Sbjct: 140 FDDAVDLVRNQLN---TFGV--QADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPD 194

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           VVT  +LI+  C A+    A  +  EM    V P+  TF  +M    + G ++ A R+  
Sbjct: 195 VVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKT 254

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M++ G  P     N L++G+C  GRV  A        ++G   D  +Y   ++  C+N 
Sbjct: 255 KMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNG 314

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  AL +   ML +G  P V TYNT
Sbjct: 315 HVSHALKVMDLMLQEGHDPDVFTYNT 340



 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK-MG 66
           +R+    P   ++N +   L +  +    LSLF+ +  +G  PD  TY I+    C+  G
Sbjct: 606 MRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGG 665

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
            +   F  L  ++   F P+  +F  L +GL
Sbjct: 666 PIKEAFDFLVEMVNKGFMPEFSSFRMLAEGL 696


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 178/317 (56%), Gaps = 12/317 (3%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K +    +L +   L   G  PD+ TYN++I+ +CK G ++    VL R+     +PD
Sbjct: 150 LGKTRKAAKILEI---LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPD 203

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            VT+ ++++ LC   ++ +A  +  ++    C PDV TYT LI   CR      A+ L +
Sbjct: 204 VVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLD 263

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +        C PD +TY+ + +G+CKEG +D+A +    M      P+V+T+  ++R
Sbjct: 264 EMRDRG------CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
             C    W +A+ L  +M+ +G  P+VVTFN+++N LC+ G +  A  +LE M Q G +P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           ++  YN L+ GFC   +++RA E    M S GC  D+ +Y  ++   CK+ ++E A+ + 
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 327 SEMLSKGIRPTVVTYNT 343
           +++ SKG  P ++TYNT
Sbjct: 438 NQLSSKGCSPVLITYNT 454



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 174/359 (48%), Gaps = 34/359 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N++     K    +  LS+  R++   + PD+ TYN ++   C  G++     V
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 75  LGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L R+L R C+ PD +T+T LI+  C +S +  A  L  ++R  GC PDV TY  L+NG+C
Sbjct: 227 LDRMLQRDCY-PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCK-----------------------------PDAI 164
           + G    A+    +M +   +  V+                               P  +
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T++ + + LC++G + +A ++  KM      P+ ++Y  L+ GFC     + A      M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + +G  P++VT+N ++  LCK+GK+++A  +L  +   G  P    YNT++DG    G+ 
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +A +L   M +     D  +Y  L+ G  +  +++ A+  + E    GIRP  VT+N+
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNS 524



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 169/327 (51%), Gaps = 6/327 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P V ++N+L   + K    D  +     + S G  P++ T+NI++   C  GR
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 +L  +LR  F+P  VTF  LI  LC +  +  A  +  K+   GC+P+  +Y  
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L++G C+      A+   E M +        C PD +TY+T+   LCK+G V+ A E+  
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRG------CYPDIVTYNTMLTALCKDGKVEDAVEILN 438

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++  +  +P ++TY ++I G   A    +A  L  EM  + ++P+ +T++ ++  L + G
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREG 498

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+DEA +      ++G+RP+A  +N++M G C + + +RA +  V M + GC  +  SY 
Sbjct: 499 KVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYT 558

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGI 334
           ILI G       + AL L +E+ +KG+
Sbjct: 559 ILIEGLAYEGMAKEALELLNELCNKGL 585



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 163/340 (47%), Gaps = 34/340 (10%)

Query: 30  NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
           N HY +V S F          D+ + N L     + G +  GF  L  ++     PD + 
Sbjct: 88  NGHYSSVNSSFA-------LEDVESNNHLRQ-MVRTGELEEGFKFLENMVYHGNVPDIIP 139

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
            T+LI+G C   +  +AA +   L   G  PDV TY  +I+G C+ G    AL++ + M+
Sbjct: 140 CTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS 199

Query: 150 NG---------------NGEFGVV-----------CKPDAITYSTITDGLCKEGFVDKAK 183
                            +G+               C PD ITY+ + +  C++  V  A 
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L  +M+D    PDVVTY  L+ G C     +EA     +M   G QPNV+T N+I+  +
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  G+  +A +LL  M++ G  P    +N L++  C  G + RA ++   M  +GC  + 
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNS 379

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  L++G+CK K+++ A+     M+S+G  P +VTYNT
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 170/339 (50%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML+     P V ++ IL     ++      + L   +   G  PD+ TYN+L+N  
Sbjct: 226 VLDRMLQ-RDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGI 284

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR+      L  +  S   P+ +T   +++ +C+  R M+A  L   +   G  P V
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  LIN LCR G    A+++ E+M          C+P++++Y+ +  G CKE  +D+A
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHG------CQPNSLSYNPLLHGFCKEKKMDRA 398

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E   +M      PD+VTY +++   C      +A  +  ++  +G  P ++T+N +++ 
Sbjct: 399 IEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDG 458

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L K GK  +A +LL+ M    ++PD   Y++L+ G    G+V+ A + F   E  G   +
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPN 518

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             ++  ++ G CK+++ + A+     M+++G +P   +Y
Sbjct: 519 AVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSY 557



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 145/287 (50%), Gaps = 6/287 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + NI+   +     +     L   +   G  P + T+NILIN  C+ G +     +
Sbjct: 307 PNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDI 366

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ +    P+++++  L+ G C E ++  A     ++ + GC PD+ TY T++  LC+
Sbjct: 367 LEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCK 426

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ +  ++++        C P  ITY+T+ DGL K G   KA +L  +M+ +++
Sbjct: 427 DGKVEDAVEILNQLSSKG------CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +TY+SL+ G       +EA   F E    G++PN VTFN IM  LCK+ + D A  
Sbjct: 481 KPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAID 540

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            L  MI  G +P+ + Y  L++G    G    A EL   + + G M+
Sbjct: 541 FLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMK 587



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 137/257 (53%), Gaps = 8/257 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FNIL   L +       + + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 75  LGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L R++ R C+ PD VT+ +++  LC + ++ +A  +  +L + GC P + TY T+I+GL 
Sbjct: 402 LERMVSRGCY-PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T  A+ L +EM   +       KPD ITYS++  GL +EG VD+A + F + +   
Sbjct: 461 KAGKTGKAIKLLDEMRAKD------LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I P+ VT+ S++ G C +   + A    + M+++G +PN  ++ +++  L   G   EA 
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEAL 574

Query: 254 RLLELMIQIGVRPDASV 270
            LL  +   G+   +S 
Sbjct: 575 ELLNELCNKGLMKKSSA 591


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/407 (32%), Positives = 194/407 (47%), Gaps = 68/407 (16%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ MLRM P PP    FN L   +AK KH+ T+LSL  +++S G+ P++YT +ILIN FC
Sbjct: 49  FNRMLRMQP-PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFC 107

Query: 64  KM--GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            +  G++     +  +++   F PD VT+ +LI GLC       A  L   +    C+P+
Sbjct: 108 HLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPN 167

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANG---------NGEFGVVCK------------ 160
           VF Y T+I+ LC+      A NLF EM            N     +C             
Sbjct: 168 VFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLN 227

Query: 161 --------PDAITYSTITDGLCKEGFV--------------------------------- 179
                   PD ++++T+ D LCKEG V                                 
Sbjct: 228 EMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKI 287

Query: 180 ---DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
              DKA  LF +M  + + PD VTY++LI G C+     +A  LF EM+     PN+VT+
Sbjct: 288 QRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTY 347

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            ++++ LCKN  + EA  LL+ +    + PD  V N  +DG C  G +  A++LF ++ S
Sbjct: 348 RILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSS 407

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G   DV++Y I+ING C+   ++ A  L+ EM   G       YNT
Sbjct: 408 KGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNT 454



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 164/327 (50%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K++      +LF  + + G+ PD++TYN LI+  C +        +
Sbjct: 166 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 225

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLC 133
           L  ++ S   PD V+F +++  LC E ++ EA  +  K+ +  GC P+V +Y TLING C
Sbjct: 226 LNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYC 285

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A+ LF EM            PD +TYST+  GLC    +  A  LF +M   +
Sbjct: 286 KIQRIDKAMYLFGEMCRQE------LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACS 339

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P++VTY  L+   C      EA  L   +    + P++   N+ ++ +C+ G+++ A 
Sbjct: 340 QIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAAR 399

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   +   G++PD   Y+ +++G C  G ++ A +LF  M+ NGC  +   Y  +  G+
Sbjct: 400 DLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGF 459

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +N E   A+ L  EM+++G      T
Sbjct: 460 LRNNETSRAIQLLQEMVARGFSADAST 486



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 123/276 (44%), Gaps = 44/276 (15%)

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           A + F ++      P    +  L+  + +  H    L+L  +M      FG+   P+  T
Sbjct: 45  AISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQM----DSFGI--PPNIYT 98

Query: 166 YSTITDGLCK--EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
              + +  C    G + +A  LF KM  E   PDVVTY +LI G C   + + A  L   
Sbjct: 99  LHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGS 158

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM-------- 275
           M+ +  QPNV  +N I++ LCK+ ++ EA  L   M+  G+ PD   YN+L+        
Sbjct: 159 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCE 218

Query: 276 ---------------------------DGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYG 307
                                      D  C  G+V  A ++   M +  GCM +V SY 
Sbjct: 219 WKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYN 278

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LINGYCK + I+ A+ L+ EM  + + P  VTY+T
Sbjct: 279 TLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYST 314



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 10/273 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M++     P V S+N L     K +  D  + LF  +    L PD  TY+ LI+  
Sbjct: 260 VVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGL 319

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C + R+     +   ++     P+ VT+  L+  LC    + EA AL   +      PD+
Sbjct: 320 CHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDI 379

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
                 I+G+CR G    A +LF  +++         +PD  TYS + +GLC+ G +D+A
Sbjct: 380 QVNNIAIDGMCRAGELEAARDLFSNLSSKG------LQPDVWTYSIMINGLCRRGLLDEA 433

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF +M +     +   Y ++ RGF   N+ + A  L  EM+ +G   +  T  + +  
Sbjct: 434 SKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKM 493

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           L  +G +D++   L+ +++   +  + +Y  +M
Sbjct: 494 LSDDG-LDQS---LKQILRDFCKQKSWIYENVM 522



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +D A      M+++   P    +N L+         +    L   M+S G   ++++  I
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 309 LINGYCK--NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LIN +C     +I  AL L+ +M+ +G RP VVTY T
Sbjct: 102 LINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGT 138


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/357 (31%), Positives = 189/357 (52%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K +  D  + +   +   G+ P+  TYN +++ +C   +       
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF 288

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT+ SL+  LC   R  EA  +F  +   G +PD+ TY TL+ G   
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348

Query: 135 TG-----HTIVALNLFEEMANGNGEFGV-VC-----------------------KPDAIT 165
            G     H ++ L +   +   +  F + +C                        P+ +T
Sbjct: 349 KGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVT 408

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y  +   LCK G VD A   F +M DE + P+++ YTSLI   C  + W++A+ L +EM+
Sbjct: 409 YGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEML 468

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D+G+  N + FN I++  CK G++ E+ +L +LM++IGV+P+   Y+TL+DG+CL G+++
Sbjct: 469 DRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMD 528

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A +L  SM S G   D  +Y  LINGYC+   ++ AL+L+ EM+S G+ P ++TYN
Sbjct: 529 EATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYN 585



 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 177/346 (51%), Gaps = 42/346 (12%)

Query: 35  TVLSLFKRLNSIG---LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFT 91
             +S + R+   G   + P ++TY ILI C C+ GR+  GF  LG +++  F  +A+TFT
Sbjct: 67  AAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFT 126

Query: 92  SLIKGLCAESRIMEAAAL-FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
            L+KGLCA+ R  +A  +   ++    C PDVF+ T L+ GLC    +  AL L   MA+
Sbjct: 127 PLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMAD 186

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI----- 205
             G       PD ++Y+T+ +G  KEG  DKA   + +M D  I+PDVVTY+S+I     
Sbjct: 187 DRGGGSA---PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCK 243

Query: 206 ------------------------------RGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
                                          G+C +    EA     +M   GV+P+VVT
Sbjct: 244 GQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVT 303

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N +M+ LCKNG+  EA ++ + M + G+ PD + Y TL+ G+   G +     L   M 
Sbjct: 304 YNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMV 363

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            NG   D   + ILI  Y K ++++ A+ ++S+M   G+ P VVTY
Sbjct: 364 RNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTY 409



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 171/335 (51%), Gaps = 6/335 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P V ++N L   L KN        +F  +   GL PD+ TY  L+  +   G 
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGA 351

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L  ++R+   PD   F  LI     + ++ EA  +F+K+R  G  P+V TY  
Sbjct: 352 LVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGA 411

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I  LC++G    A+  FE+M +          P+ I Y+++   LC     DKA+EL L
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEG------LTPNIIVYTSLIHSLCIFDKWDKAEELIL 465

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M D  I  + + + S+I   C      E++ LF  M+  GV+PNV+T++ +++  C  G
Sbjct: 466 EMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAG 525

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           KMDEA++LL  M  +G++PD   YNTL++G+C   R++ A  LF  M S+G   ++ +Y 
Sbjct: 526 KMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYN 585

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I++ G    +    A  LY  +   G +  + TYN
Sbjct: 586 IILQGLFHTRRTAAAKELYVGITKSGTQLELSTYN 620



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 175/366 (47%), Gaps = 41/366 (11%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V S+  +     K    D   S +  +    + PD+ TY+ +I   CK   +    
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            VL  ++++   P+ +T+ S++ G C+  +  EA     K+R+ G +PDV TY +L++ L
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYL 311

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF-------------- 178
           C+ G +  A  +F+ M     E      PD  TY T+  G   +G               
Sbjct: 312 CKNGRSTEARKIFDSMTKRGLE------PDIATYCTLLQGYATKGALVEMHALLDLMVRN 365

Query: 179 ---------------------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
                                VD+A  +F KM+   +NP+VVTY ++I   C +   ++A
Sbjct: 366 GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDA 425

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
              F +M+D+G+ PN++ +  +++ LC   K D+A  L+  M+  G+  +   +N+++  
Sbjct: 426 MLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHS 485

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  GRV  +++LF  M   G   +V +Y  LI+GYC   +++ A  L S M S G++P 
Sbjct: 486 HCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545

Query: 338 VVTYNT 343
            VTYNT
Sbjct: 546 CVTYNT 551



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 165/346 (47%), Gaps = 46/346 (13%)

Query: 1   FCIFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNIL 58
             + D M+R  +HP       FNIL    AK +  D  + +F ++   GL P++ TY  +
Sbjct: 356 HALLDLMVRNGIHPDHHV---FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAV 412

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC-------------------- 98
           I   CK G V    +   +++    TP+ + +TSLI  LC                    
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472

Query: 99  ---------------AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
                           E R++E+  LF  +   G KP+V TY+TLI+G C  G    A  
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATK 532

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L   M      F V  KPD +TY+T+ +G C+   +D A  LF +M    ++P+++TY  
Sbjct: 533 LLSSM------FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNI 586

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           +++G  +      AK L++ +   G Q  + T+N+I++ LCKN   DEA R+ + +    
Sbjct: 587 ILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 646

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           ++ +   +N ++      GR + AK+LF ++ +NG + DV +Y ++
Sbjct: 647 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 692



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 121/249 (48%), Gaps = 6/249 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +  IG+ P++ TY+ LI+ +C  G++     +L  +      PD VT+ +LI G C
Sbjct: 498 LFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYC 557

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             SR+ +A ALF ++ + G  P++ TY  ++ GL  T  T  A  L+  +     +    
Sbjct: 558 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQL--- 614

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  TY+ I  GLCK    D+A  +F  +   ++  +  T+  +I         +EAK
Sbjct: 615 ---ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 671

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF  +   G+ P+V T++++   L + G ++E   L   M + G   ++ + N+++   
Sbjct: 672 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 731

Query: 279 CLTGRVNRA 287
              G + RA
Sbjct: 732 LQRGDITRA 740



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 128/273 (46%), Gaps = 9/273 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +FD M+R+   P  +    ++ G CLA     D    L   + S+G+ PD  TYN LIN 
Sbjct: 498 LFDLMVRIGVKPNVITYSTLIDGYCLAGK--MDEATKLLSSMFSVGMKPDCVTYNTLING 555

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +C++ R+     +   ++ S  +P+ +T+  +++GL    R   A  L+  +   G + +
Sbjct: 556 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLE 615

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY  +++GLC+   T  AL +F+ +   + +       +  T++ +   L K G  D+
Sbjct: 616 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVGRNDE 669

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK+LF  +    + PDV TY+ +           E   LF+ M + G   N    N I+ 
Sbjct: 670 AKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 729

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           +L + G +  A   L ++ +     +AS  + L
Sbjct: 730 KLLQRGDITRAGTYLSMIDEKHFSLEASTASLL 762



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P V TY  LI   C A   +        ++ +G +   +TF  ++  LC + +  +A 
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 254 RL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN---GCMRDVFSYGIL 309
            + L  M ++   PD      L+ G C   R   A EL   M  +   G   DV SY  +
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ING+ K  + + A S Y EML + I P VVTY++
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSS 236


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 175/336 (52%), Gaps = 6/336 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           ++     P V S++ +            VL L + +   GL P+LYTYN +I   CK G+
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     VL  ++     PD V +T+LI G C    I  A  LF ++      PD   YT 
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I GLCR G  + A  +F +M      F    +PD +TY+T+ DG CK G ++KA  L  
Sbjct: 121 VICGLCRCGKMMEADKVFNKM------FSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHN 174

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M    + P+VVTYT+L  G C     + A  L  EM  +G+Q N+ T+N ++N LCK+G
Sbjct: 175 QMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSG 234

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            + +A +L+E M   G+ PD   + TLMD +C TG + +A EL   M   G    V ++ 
Sbjct: 235 NIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFN 294

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +L+NG+C +  +E    L + ML KGI P   TYN+
Sbjct: 295 VLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNS 330



 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 191/371 (51%), Gaps = 41/371 (11%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           ++M    P + ++N +   L K+   D    + + + + G+ PD   Y  LI+ FCK+G 
Sbjct: 36  MQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGN 95

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +   + +   + +    PD + +T++I GLC   ++MEA  +F K+ + G +PD  TYTT
Sbjct: 96  IQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTT 155

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+G C++G    A +L  +M            P+ +TY+ + DGLCK G VD A EL  
Sbjct: 156 LIDGYCKSGEMEKAFSLHNQMVQSG------LTPNVVTYTALADGLCKLGQVDTANELLH 209

Query: 188 KM--------------------KDENIN---------------PDVVTYTSLIRGFCYAN 212
           +M                    K  NI                PD +T+T+L+  +C   
Sbjct: 210 EMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTG 269

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           +  +A  L  EM+D+G+QP V+TFNV+MN  C +G +++  RLL  M++ G+ P+ + YN
Sbjct: 270 EMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYN 329

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +LM  +C+   +    E++  M + G M D  +Y ILI G+CK + ++ A  L+ EM  K
Sbjct: 330 SLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEK 389

Query: 333 GIRPTVVTYNT 343
           G   T  +YN+
Sbjct: 390 GFNLTASSYNS 400



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD M +    P  +    ++ G     K  +    +F ++ S G+ PD  TY  LI+
Sbjct: 100 YKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEAD-KVFNKMFSRGVEPDEVTYTTLID 158

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK G +   F +  ++++S  TP+ VT+T+L  GLC   ++  A  L  ++   G + 
Sbjct: 159 GYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQL 218

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY +L+NGLC++G+   A+ L EEM    G +     PD IT++T+ D  CK G + 
Sbjct: 219 NICTYNSLVNGLCKSGNIRQAVKLMEEMEVA-GMY-----PDTITFTTLMDAYCKTGEMV 272

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA EL  +M D  + P V+T+  L+ GFC +    + + L   M+++G+ PN  T+N +M
Sbjct: 273 KAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLM 332

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
            + C    M   + + + M   GV PD++ YN L+ G C    +  A  L   M   G  
Sbjct: 333 KQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFN 392

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               SY  +I G+ K K+I  A  L+ EM  +G+      YN
Sbjct: 393 LTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYN 434



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 6/245 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           +C++N L   L K+ +    + L + +   G++PD  T+  L++ +CK G +     +L 
Sbjct: 220 ICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLR 279

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L     P  +TF  L+ G C    + +   L   +   G  P+  TY +L+   C   
Sbjct: 280 EMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRN 339

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +      +++ M       GV+  PD+ TY+ +  G CK   + +A  L  +M ++  N 
Sbjct: 340 NMRCTTEIYKGMC----ARGVM--PDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNL 393

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
              +Y S+I+GF      +EA+ LF EM  +G+  +   +N+ ++     G M+ A  L 
Sbjct: 394 TASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELC 453

Query: 257 ELMIQ 261
           +  I+
Sbjct: 454 DEAIE 458


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 117/328 (35%), Positives = 180/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     +    D    L   +   G+ P L T+N ++N  CK GR+     +
Sbjct: 188 PNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKM 247

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R   TPD V++ +L+ G C    + EA A+F ++   G  PDV T+T+LI+ +CR
Sbjct: 248 FDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCR 307

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+ L  +M     E G+  + +  T++ + DG C+ GF+D A     +M++  I
Sbjct: 308 AGNLERAVALVGQMR----ERGL--RMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRI 361

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VV Y  LI G+C     +EA+ L  EM  +G++P+VVT++ I++  CK G  D A  
Sbjct: 362 QPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFE 421

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M++ GV PDA  Y++L+ G C   R+  A ELF  M   G   D F+Y  LI+G+C
Sbjct: 422 LNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHC 481

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ ALSL+ EM+ KG+ P VVTY+
Sbjct: 482 KEGNVQKALSLHDEMIKKGVLPDVVTYS 509



 Score =  204 bits (518), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 179/330 (54%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L+ +    +   L   +   G+ P++YTYNIL+   C  G+      V
Sbjct: 118 PSLLAYNAVLLALS-DASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGV 176

Query: 75  LGRILRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +G  +R     P+ VT+ +L+   C    +  A  L   +R  G +P + T+ T++NGLC
Sbjct: 177 VGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLC 236

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A  +F+EMA           PD ++Y+T+  G CK G + +A  +F +M  + 
Sbjct: 237 KAGRMEDARKMFDEMAREG------LTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKG 290

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PDVVT+TSLI   C A +   A  L  +M ++G++ N  TF  +++  C+NG +D+A 
Sbjct: 291 VVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDAL 350

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             ++ M +  ++P    YN L++G+C  GR++ A+EL   ME+ G   DV +Y  +++GY
Sbjct: 351 LAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGY 410

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK  + + A  L  +ML KG+ P  +TY++
Sbjct: 411 CKIGDTDSAFELNRKMLKKGVVPDAITYSS 440



 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 175/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN +   L K    +    +F  +   GL PD  +YN L++ +CK G +     V
Sbjct: 223 PSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAV 282

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    PD VTFTSLI  +C    +  A AL  ++R  G + + FT+T LI+G CR
Sbjct: 283 FAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCR 342

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL   +EM     +  VVC      Y+ + +G CK G +D+A+EL  +M+ + +
Sbjct: 343 NGFLDDALLAMKEMRECRIQPSVVC------YNVLINGYCKLGRMDEARELIHEMEAKGM 396

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY++++ G+C   D + A  L  +M+ +GV P+ +T++ ++  LC+  ++ +A  
Sbjct: 397 KPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACE 456

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M+Q+G++PD   Y TL+DG C  G V +A  L   M   G + DV +Y +LI+G  
Sbjct: 457 LFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLS 516

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+   + A  L  ++  +   P  + Y  
Sbjct: 517 KSARTKEAQRLLFKLYYEDPVPDNIKYEA 545



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 148/279 (53%), Gaps = 21/279 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N+L     K    D    L   + + G+ PD+ TY+ +++ +CK+G     F +
Sbjct: 363 PSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFEL 422

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L+    PDA+T++SLI+GLC E R+ +A  LF K+   G +PD FTYTTLI+G C+
Sbjct: 423 NRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCK 482

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL+L +EM       GV+  PD +TYS + DGL K     +A+ L  K+  E+ 
Sbjct: 483 EGNVQKALSLHDEMIKK----GVL--PDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDP 536

Query: 195 NPDVVTY---------------TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            PD + Y                +L++GF      N+A  ++  M+D+  + +   ++V+
Sbjct: 537 VPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVL 596

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
           ++  C+ G + +A    + +++ G  P+++   +L+ G 
Sbjct: 597 IHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGL 635



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 147/293 (50%), Gaps = 35/293 (11%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           + P  + + +++  L +++ +  A  L   +   G  P+V+TY  L+  LC  G    AL
Sbjct: 116 YAPSLLAYNAVLLAL-SDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEAL 174

Query: 143 NLFEEMANGNG--------------------------------EFGVVCKPDAITYSTIT 170
            +  +   G G                                E GV  +P  +T++T+ 
Sbjct: 175 GVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGV--RPSLVTFNTVV 232

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +GLCK G ++ A+++F +M  E + PD V+Y +L+ G+C A   +EA  +F EM  +GV 
Sbjct: 233 NGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVV 292

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+VVTF  +++ +C+ G ++ A  L+  M + G+R +   +  L+DGFC  G ++ A   
Sbjct: 293 PDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLA 352

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M        V  Y +LINGYCK   ++ A  L  EM +KG++P VVTY+T
Sbjct: 353 MKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYST 405


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 188/359 (52%), Gaps = 31/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + ++N +   L K +  D   +  +++ +  + P+ +TYN LI  +   G+      
Sbjct: 254 PPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVR 313

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   + R    PD VT + L+  LC   +I EA  +F  +   G  PDVF+Y  ++NG  
Sbjct: 314 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA 373

Query: 134 RTGHTIVALNLFEEMANGNG------EFGVV------------------------CKPDA 163
             G  +   +LF+ M  G+G       F V+                         KPD 
Sbjct: 374 TKGCLVDMTDLFDLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDV 432

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY T+   LC+ G +D A E F +M D+ + PD   Y  LI+GFC      +AK L  E
Sbjct: 433 VTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISE 492

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           +M+ G+  ++V F+ I+N LCK G++ +A  + +L + +G+ PDA VYN LMDG+CL G+
Sbjct: 493 IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGK 552

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +A  +F +M S G   +V  YG L+NGYCK   I+  LSL+ EML +GI+P+ + Y+
Sbjct: 553 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 611



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 159/314 (50%), Gaps = 10/314 (3%)

Query: 36  VLSLFKRLNSIG-----LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
            ++LF R  S       L P  +TY IL++C  +  R        G++LR+    + +  
Sbjct: 93  AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIA 152

Query: 91  TSLIKGLCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
             L++G C   R  EA   L  +    GC PDVF+Y+ L+  LC  G +  A +L   MA
Sbjct: 153 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 212

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
            G    G VC P+ + Y+T+ DG  KEG V+KA +LF +M    I PD+VTY S++   C
Sbjct: 213 EG----GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALC 268

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            A   ++A+    +M+++ V PN  T+N ++      G+  EA R+ + M +  + PD  
Sbjct: 269 KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVV 328

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
             + LM   C  G++  A+++F +M   G   DVFSY I++NGY     +     L+  M
Sbjct: 329 TLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLM 388

Query: 330 LSKGIRPTVVTYNT 343
           L  GI P   T+N 
Sbjct: 389 LGDGIAPDFYTFNV 402



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 168/341 (49%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M  M    P V S+NI+    A       +  LF  +   G+ PD YT+N+LI  +
Sbjct: 349 VFDTMA-MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 407

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +    ++   +      PD VT+ ++I  LC   ++ +A   F ++   G  PD 
Sbjct: 408 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 467

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           + Y  LI G C  G  + A  L  E+ N           D + +S+I + LCK G V  A
Sbjct: 468 YAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL------DIVFFSSIINNLCKLGRVMDA 521

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F    +  ++PD V Y  L+ G+C      +A  +F  M+  G++PNVV +  ++N 
Sbjct: 522 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 581

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G++DE   L   M+Q G++P   +Y+ ++DG    GR   AK  F  M  +G   D
Sbjct: 582 YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMD 641

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y I++ G  KN+  + A+ L+ E+ +  ++  ++T NT
Sbjct: 642 ICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 682



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 165/335 (49%), Gaps = 6/335 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R H   P V + ++L G L K         +F  +   G  PD+++YNI++N +   G 
Sbjct: 318 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 377

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +   +L     PD  TF  LIK       + +A  +F ++R  G KPDV TY T
Sbjct: 378 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 437

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I  LCR G    A+  F +M +     GV   PD   Y+ +  G C  G + KAKEL  
Sbjct: 438 VIAALCRIGKMDDAMEKFNQMIDQ----GVA--PDKYAYNCLIQGFCTHGSLLKAKELIS 491

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++ +  ++ D+V ++S+I   C      +A+ +F   ++ G+ P+ V +N++M+  C  G
Sbjct: 492 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVG 551

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           KM++A R+ + M+  G+ P+   Y TL++G+C  GR++    LF  M   G       Y 
Sbjct: 552 KMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 611

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I+I+G  +      A   + EM   GI   + TYN
Sbjct: 612 IIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYN 646



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 161/334 (48%), Gaps = 7/334 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ M R H   P V ++  +   L +    D  +  F ++   G+ PD Y YN LI  F
Sbjct: 419 IFNEM-RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 477

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +     ++  I+ +    D V F+S+I  LC   R+M+A  +F      G  PD 
Sbjct: 478 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 537

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  L++G C  G    AL +F+ M +   E      P+ + Y T+ +G CK G +D+ 
Sbjct: 538 VVYNMLMDGYCLVGKMEKALRVFDAMVSAGIE------PNVVGYGTLVNGYCKIGRIDEG 591

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M    I P  + Y+ +I G   A     AK  F EM + G+  ++ T+N+++  
Sbjct: 592 LSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 651

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L KN   DEA  L + +  + V+ +    NT++DG   T RV  AK+LF S+  +  +  
Sbjct: 652 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 711

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           V +Y I+I    K   +E A  ++S M + G  P
Sbjct: 712 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 745



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 166/342 (48%), Gaps = 15/342 (4%)

Query: 10  MHPSP-----PPVCSFNILFGCL---AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +H +P     P V S++IL   L    K+   D +L +     ++   P++  YN +I+ 
Sbjct: 173 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDG 231

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           F K G V+    +   +++    PD VT+ S++  LC    + +A A   ++      P+
Sbjct: 232 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 291

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +TY  LI G   TG    A+ +F+EM   +        PD +T S +   LCK G + +
Sbjct: 292 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS------ILPDVVTLSMLMGSLCKYGKIKE 345

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+++F  M  +  NPDV +Y  ++ G+       +   LF  M+  G+ P+  TFNV++ 
Sbjct: 346 ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIK 405

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
                G +D+A  +   M   GV+PD   Y T++   C  G+++ A E F  M   G   
Sbjct: 406 AYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAP 465

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D ++Y  LI G+C +  +  A  L SE+++ G+   +V +++
Sbjct: 466 DKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 507



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 108/213 (50%), Gaps = 5/213 (2%)

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           CR+G  + A+ LF   A+   +   V  P + TY+ + D   +    + A   F ++   
Sbjct: 86  CRSGPAL-AVALFNRAAS-RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRT 143

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDE 251
            +  +++    L+ GFC A   +EA  + +    + G  P+V ++++++  LC  GK  +
Sbjct: 144 GLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 203

Query: 252 ASRLLELMIQIGV--RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           A  LL +M + G    P+   YNT++DGF   G VN+A +LF  M   G   D+ +Y  +
Sbjct: 204 ADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSV 263

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  CK + ++ A +   +M++K + P   TYN
Sbjct: 264 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYN 296



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 7/254 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+     P  V  +  L     K    D  LSLF+ +   G+ P    Y+I+I+  
Sbjct: 559 VFDAMVSAGIEPN-VVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 617

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + GR  P  +    +  S    D  T+  +++GL       EA  LF +LRA   K ++
Sbjct: 618 FEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 677

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T  T+I+G+ +T     A +LF  ++           P  +TYS +   L KEG V++A
Sbjct: 678 ITLNTMIDGMFQTRRVEEAKDLFASISRSR------LVPSVVTYSIMITNLIKEGLVEEA 731

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +++F  M++    P+      ++R     N+   A     ++ ++      +T  ++++ 
Sbjct: 732 EDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDL 791

Query: 243 LCKNGKMDEASRLL 256
               G   E  R L
Sbjct: 792 FSSKGTCREQIRFL 805


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 187/358 (52%), Gaps = 29/358 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++N L   L K +  D  +++ + +   G+ PD  TYNI+I  +C +G++     
Sbjct: 232 PPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVR 291

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L ++  S   PD VT++ LI+  C   R  EA ++F  +   G KP+   Y  L++G  
Sbjct: 292 LLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYA 351

Query: 134 RTGHTIVALNLFEEMANGN---------------GEFGVVCK--------------PDAI 164
             G  I   +L + M                    + G V K              PD +
Sbjct: 352 TKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVV 411

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           +YST+   LCK G V+ A   F +M  E ++P+++++TSLI G C   +W + + L  EM
Sbjct: 412 SYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEM 471

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +++G+ P+ +  N IM+ LCK G++ EA    +++I IGV+PD   YNTL+DG+C  G++
Sbjct: 472 INRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKM 531

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + + +    M S G   D ++Y  L+NGY KN  +E AL+LY EM  K ++   +T N
Sbjct: 532 DESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSN 589



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 190/385 (49%), Gaps = 49/385 (12%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDT-------VLSLFKRLNSIGLFPDLYTY 55
           +FD +L     P  V +FN +   +A+     +        +SLF  +   G+       
Sbjct: 36  LFDELLP-QARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRSGVNMMAAII 94

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLR 114
            ILI CFC +GR+   F      L++ +    VT   LIKGLC  +R  +A  + F ++ 
Sbjct: 95  GILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMP 154

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGL 173
             G  PDVF+Y  LI GLC    +  AL L   M A+G    G  C P+ ++Y+T+ DG 
Sbjct: 155 ELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADG----GYNCSPNVVSYNTVIDGF 210

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
            KEG VDKA  LF +M  + + PDVVTY SLI G C A   ++A  +   M D+GV P+ 
Sbjct: 211 FKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDT 270

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T+N+++   C  G+++EA RLL+ M   G++PD   Y+ L+  +C  GR   A+ +F S
Sbjct: 271 RTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDS 330

Query: 294 MESNGC----------------------MRDVF-------------SYGILINGYCKNKE 318
           M   G                       +RD+              ++ ILI  Y K+  
Sbjct: 331 MVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGA 390

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A++ ++EM   G+RP VV+Y+T
Sbjct: 391 VDKAMTAFTEMRQNGLRPDVVSYST 415



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 172/340 (50%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R    P    +FNIL    AK+   D  ++ F  +   GL PD+ +Y+ +I+  
Sbjct: 362 LLDLMIR-DGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHIL 420

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GRV        +++    +P+ ++FTSLI GLC+     +   L  ++   G  PD 
Sbjct: 421 CKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDA 480

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
               T+++ LC+ G  + A + F+ + +      +  KPD ++Y+T+ DG C  G +D++
Sbjct: 481 IFMNTIMDNLCKEGRVVEAQDFFDMVIH------IGVKPDVVSYNTLIDGYCFVGKMDES 534

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +   +M    + PD  TY SL+ G+       +A  L+ EM  + V+   +T N++++ 
Sbjct: 535 IKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHG 594

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L + G++  A  L   M+  G +     YNT++ G C    V+ A  +F  + S     D
Sbjct: 595 LFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELD 654

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           V ++ I+IN   K   I+ A SL+S M+ +G  P V+TY+
Sbjct: 655 VRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYS 694



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 170/340 (50%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R    P       +L G   K    D V  L   +   G+  +   +NILI  +
Sbjct: 327 VFDSMVRKGQKPNSTIYHILLHGYATKGALID-VRDLLDLMIRDGIPFEHRAFNILICAY 385

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G V         + ++   PD V+++++I  LC   R+ +A   F ++ + G  P++
Sbjct: 386 AKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNI 445

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            ++T+LI+GLC  G       L  EM N          PDAI  +TI D LCKEG V +A
Sbjct: 446 ISFTSLIHGLCSIGEWKKVEELAFEMINRG------IHPDAIFMNTIMDNLCKEGRVVEA 499

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++ F  +    + PDVV+Y +LI G+C+    +E+      M+  G++P+  T+N ++N 
Sbjct: 500 QDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNG 559

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             KNG++++A  L   M +  V+  A   N ++ G    GR+  A+EL++ M   G    
Sbjct: 560 YFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLR 619

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +Y  ++ G C+N  ++ AL ++ ++ SK     V T++
Sbjct: 620 IETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFS 659



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 137/296 (46%), Gaps = 6/296 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P     N +   L K          F  +  IG+ PD+ +YN LI+ +C +G++      
Sbjct: 478 PDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQ 537

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R++     PD+ T+ SL+ G     R+ +A AL+ ++     K    T   +++GL +
Sbjct: 538 LDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQ 597

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  L+ +M +   +  +       TY+T+  GLC+   VD+A  +F  ++ +  
Sbjct: 598 AGRIVAARELYMKMVDRGTQLRIE------TYNTVLGGLCENSCVDEALRMFEDLRSKEF 651

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             DV T++ +I         +EAK LF  M+ +G  P+V+T+++++    + G ++E+  
Sbjct: 652 ELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDN 711

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           L   M + G   D+ + N ++      G V RA      ++      +  +  +LI
Sbjct: 712 LFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALLI 767


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 191/375 (50%), Gaps = 38/375 (10%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           + +R H   P V ++N L   L KN   D    LF+ + S+   P + TYN L++   + 
Sbjct: 103 HEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRT 162

Query: 66  GRVSPGFVVLGRIL--RS------CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           G++     +   +L  RS      C +P+ +T++ LI GLC  +R+ +A  L   ++A G
Sbjct: 163 GKLERAMALFQEMLDRRSHDMDDRC-SPNVITYSVLIDGLCKANRVSQAVELLESMKARG 221

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV------------------- 158
           C PDV TYT L++GLC+      A  +  EM +      +V                   
Sbjct: 222 CSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDAL 281

Query: 159 ----------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                     C P+ +TY T+ DGLCK G V  A  +   M D+   PD++ Y  LI G 
Sbjct: 282 ALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGL 341

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C A+  +E+  L    +  G++P+VVT++ ++  LC++ ++DEA RLL  +   G  PD 
Sbjct: 342 CKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDV 401

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
            +Y+TL+DG C  G+V+ A +L+  M  +GC  DV +Y  LI+G CK   ++ A  L + 
Sbjct: 402 ILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLAR 461

Query: 329 MLSKGIRPTVVTYNT 343
           M+  G  P+ +TYN+
Sbjct: 462 MVRMGTPPSTMTYNS 476



 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 174/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++++L   L K       + L + + + G  PD+ TY IL++  CK  +V+  + V
Sbjct: 189 PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEV 248

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L +   P+ VT+ SL+ GLC   R+ +A AL   +   GC P+V TY TLI+GLC+
Sbjct: 249 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 308

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +  +M +  G       PD + Y+ + +GLCK   VD++  L  +     I
Sbjct: 309 VGRVKDACAMLADMIDKGG------TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI 362

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY+S+I G C +N  +EA  L + +  +G  P+V+ ++ +++ LCK GK+DEA  
Sbjct: 363 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 422

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E+M   G   D   Y+TL+DG C  GRV+ A  L   M   G      +Y  LI G C
Sbjct: 423 LYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLC 482

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               ++ A+ L  EM      P+ VTYN
Sbjct: 483 DLNHLDEAIELVEEMERSNCAPSAVTYN 510



 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 176/341 (51%), Gaps = 2/341 (0%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M R     P V   +IL   L K K     L  F+ +   G+  D   Y  L++   
Sbjct: 32  FDEM-RSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLW 90

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K  R+     +L  +      P+ VT+ SLI GLC  +    A  LF  +++  C P + 
Sbjct: 91  KEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMV 150

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNG-EFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           TY TL++GL RTG    A+ LF+EM +    +    C P+ ITYS + DGLCK   V +A
Sbjct: 151 TYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQA 210

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL   MK    +PDV+TYT L+ G C  +    A  +  EM+D G  PN+VT+N +++ 
Sbjct: 211 VELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHG 270

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+  ++ +A  L+  M   G  P+   Y TL+DG C  GRV  A  +   M   G   D
Sbjct: 271 LCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD 330

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  Y +LING CK  +++ +++L    +S GI+P VVTY++
Sbjct: 331 LMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSS 371



 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/327 (36%), Positives = 172/327 (52%), Gaps = 12/327 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K        ++   +   G  PDL  YN+LIN  CK  +V     +
Sbjct: 294 PNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIAL 353

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R +     PD VT++S+I GLC  +R+ EA  L   +++ GC PDV  Y+TLI+GLC+
Sbjct: 354 LRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 413

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L+E MA G+G     C  D +TYST+ DGLCK G VD+A  L  +M     
Sbjct: 414 AGKVDEAFDLYEVMA-GDG-----CDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGT 467

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P  +TY SLI+G C  N  +EA  L  EM      P+ VT+N++++ +C+  ++D A  
Sbjct: 468 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVV 527

Query: 255 LLEL-----MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           LLE      +   G   D   Y++L+DG C  GRV  A + F  M  NG + D  +Y IL
Sbjct: 528 LLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSIL 587

Query: 310 INGYCKNKEIEGALSL-YSEMLSKGIR 335
           + G  K+K++     L   +M+  G R
Sbjct: 588 LEGLKKSKDLHELRHLVLDQMVQLGYR 614



 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 172/333 (51%), Gaps = 11/333 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L + +     L+L + +   G  P++ TY  LI+  CK+GRV     +
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 318

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++    TPD + +  LI GLC   ++ E+ AL  +  + G KPDV TY+++I GLCR
Sbjct: 319 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 378

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A  L   + +        C PD I YST+ DGLCK G VD+A +L+  M  +  
Sbjct: 379 SNRLDEACRLLLYVKSRG------CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGC 432

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + DVVTY++LI G C A   +EA  L   M+  G  P+ +T+N ++  LC    +DEA  
Sbjct: 433 DADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIE 492

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-----GCMRDVFSYGIL 309
           L+E M +    P A  YN L+ G C   RV+ A  L    ++      G   D  +Y  L
Sbjct: 493 LVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSL 552

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I+G CK   +  AL  + EM+  G+ P  +TY+
Sbjct: 553 IDGLCKAGRVAEALDYFQEMIDNGVIPDHITYS 585



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 131/262 (50%), Gaps = 36/262 (13%)

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV---------VCK-------- 160
           C+PDV+TY  L+ G CR G    A   F+EM + N    V         +CK        
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 161 ------------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                        D + Y+ +  GL KE  +D+A  +  +M+D    P+VVTY SLI G 
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR--- 265
           C  N+ + A+ LF  M      P++VT+N +++ L + GK++ A  L + M+        
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMD 184

Query: 266 ----PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
               P+   Y+ L+DG C   RV++A EL  SM++ GC  DV +Y IL++G CK  ++  
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 244

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A  +  EML  G  P +VTYN+
Sbjct: 245 AWEVLREMLDAGCVPNLVTYNS 266



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 111/219 (50%), Gaps = 11/219 (5%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V  ++ L   L K    D    L++ +   G   D+ TY+ LI+  CK GRV    +
Sbjct: 398 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHL 457

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R++R    P  +T+ SLIKGLC  + + EA  L  ++    C P   TY  LI+G+C
Sbjct: 458 LLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMC 517

Query: 134 RTGHTIVALNLFEE-----MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           R      A+ L E+     +A G          D I YS++ DGLCK G V +A + F +
Sbjct: 518 RMERVDSAVVLLEQAKARCVAAGGTAL------DTIAYSSLIDGLCKAGRVAEALDYFQE 571

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           M D  + PD +TY+ L+ G   + D +E + L ++ M Q
Sbjct: 572 MIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQ 610



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 42/227 (18%)

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP--------------------- 196
           +C+PD  TY+ +  G C+ G +D+A+  F +M+ +N+ P                     
Sbjct: 4   ICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDA 63

Query: 197 --------------DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
                         D V YT+L+ G       ++A  +  EM D G +PNVVT+N +++ 
Sbjct: 64  LRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDG 123

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-------E 295
           LCKN + D A  L E M  +   P    YNTL+DG   TG++ RA  LF  M        
Sbjct: 124 LCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDM 183

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            + C  +V +Y +LI+G CK   +  A+ L   M ++G  P V+TY 
Sbjct: 184 DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYT 230



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+RM  +PP   ++N L   L    H D  + L + +      P   TYNILI+  C+M 
Sbjct: 462 MVRM-GTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRME 520

Query: 67  RVSPGFVVLGRILRSCFTP-----DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           RV    V+L +    C        D + ++SLI GLC   R+ EA   F ++   G  PD
Sbjct: 521 RVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPD 580

Query: 122 VFTYTTLINGL 132
             TY+ L+ GL
Sbjct: 581 HITYSILLEGL 591


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 178/329 (54%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++++     + +    VL L + L   GL P+ YTYN +I+  CK GRV     V
Sbjct: 285 PDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQV 344

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD V +T+LI G      +     LF +++     PD  TYT++I+GLC+
Sbjct: 345 LRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQ 404

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  LF EM +         KPD +TY+ + DG CK G + +A  L  +M ++ +
Sbjct: 405 AGKVVEARKLFSEMLSKG------LKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGL 458

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTYT+L+ G C   + + A  L  EM ++G+QPNV T+N ++N LCK G +++A +
Sbjct: 459 TPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVK 518

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M   G  PD   Y T+MD +C  G + +A EL   M   G    + ++ +L+NG+C
Sbjct: 519 LMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFC 578

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  +E    L   ML KGI P   T+N+
Sbjct: 579 MSGMLEDGERLIKWMLDKGIMPNATTFNS 607



 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 188/364 (51%), Gaps = 41/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +   L K         + + + +  +FPD   Y  LI+ F K G VS  + +
Sbjct: 320 PNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKL 379

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R    PD VT+TS+I GLC   +++EA  LF+++ + G KPD  TYT LI+G C+
Sbjct: 380 FDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCK 439

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L  +M     E G+   P+ +TY+ + DGLCK G VD A EL  +M ++ +
Sbjct: 440 AGEMKEAFSLHNQMV----EKGLT--PNVVTYTALVDGLCKCGEVDIANELLHEMSEKGL 493

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEM------------------------------ 224
            P+V TY +LI G C   +  +A  L  EM                              
Sbjct: 494 QPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHE 553

Query: 225 -----MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
                +D+G+QP +VTFNV+MN  C +G +++  RL++ M+  G+ P+A+ +N+LM  +C
Sbjct: 554 LLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYC 613

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
           +   +    E++  M + G + D  +Y ILI G+CK + ++ A  L+ EM+ KG   T  
Sbjct: 614 IRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAA 673

Query: 340 TYNT 343
           +YN+
Sbjct: 674 SYNS 677



 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 185/324 (57%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+NI+   L +        SL  ++   G  PD+ +Y+++++ +C++ ++     ++  +
Sbjct: 254 SYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEEL 313

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            R    P+  T+ S+I  LC   R++EA  +   ++     PD   YTTLI+G  ++G+ 
Sbjct: 314 QRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNV 373

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
            V   LF+EM            PD +TY+++  GLC+ G V +A++LF +M  + + PD 
Sbjct: 374 SVEYKLFDEMKRKK------IVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDE 427

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTYT+LI G+C A +  EA  L  +M+++G+ PNVVT+  +++ LCK G++D A+ LL  
Sbjct: 428 VTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHE 487

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + G++P+   YN L++G C  G + +A +L   M+  G   D  +Y  +++ YCK  E
Sbjct: 488 MSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGE 547

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           +  A  L   ML KG++PT+VT+N
Sbjct: 548 MAKAHELLRIMLDKGLQPTIVTFN 571



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 167/333 (50%), Gaps = 7/333 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD M R    P  V   +++ G     K  +    LF  + S GL PD  TY  LI+
Sbjct: 377 YKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEA-RKLFSEMLSKGLKPDEVTYTALID 435

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK G +   F +  +++    TP+ VT+T+L+ GLC    +  A  L  ++   G +P
Sbjct: 436 GYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQP 495

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V TY  LINGLC+ G+   A+ L EEM +  G F     PD ITY+TI D  CK G + 
Sbjct: 496 NVCTYNALINGLCKVGNIEQAVKLMEEM-DLAGFF-----PDTITYTTIMDAYCKMGEMA 549

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA EL   M D+ + P +VT+  L+ GFC +    + + L   M+D+G+ PN  TFN +M
Sbjct: 550 KAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLM 609

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
            + C    M     + + M   GV PD + YN L+ G C    +  A  L   M   G  
Sbjct: 610 KQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFS 669

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
               SY  LI G+ K K+ E A  L+ EM + G
Sbjct: 670 LTAASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 134/255 (52%), Gaps = 7/255 (2%)

Query: 88  VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI-VALNLFE 146
           + F    + L     ++EA  LF KL  +G    V +    +  L  +   I  A  +F 
Sbjct: 182 LVFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFR 241

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           E +    E GV    + ++Y+ I   LC+ G V +A  L ++M+     PDVV+Y+ ++ 
Sbjct: 242 EYS----EVGVCW--NTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVD 295

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G+C      +   L  E+  +G++PN  T+N I++ LCK G++ EA ++L +M    + P
Sbjct: 296 GYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFP 355

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D  VY TL+ GF  +G V+   +LF  M+    + D  +Y  +I+G C+  ++  A  L+
Sbjct: 356 DNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLF 415

Query: 327 SEMLSKGIRPTVVTY 341
           SEMLSKG++P  VTY
Sbjct: 416 SEMLSKGLKPDEVTY 430


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +      ++     +   K++ S G+ PD+ TYN L++  CK GR +    +
Sbjct: 264 PNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKI 323

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    PD  T+ +L++G   +  ++E  AL   +   G  PD   +  LI    +
Sbjct: 324 FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAK 383

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +F +M     + G+   P+ +TY  +   LCK G VD A   F +M DE +
Sbjct: 384 QEKVDEAMLVFSKMR----QHGL--NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGL 437

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+++ YTSLI   C  + W++A+ L +EM+D+G+  N + FN I++  CK G++ E+ +
Sbjct: 438 TPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEK 497

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L +LM++IGV+P+   Y+TL+DG+CL G+++ A +L  SM S G   D  +Y  LINGYC
Sbjct: 498 LFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYC 557

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +   ++ AL+L+ EM+S G+ P ++TYN
Sbjct: 558 RVSRMDDALALFKEMVSSGVSPNIITYN 585



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 189/378 (50%), Gaps = 44/378 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P ++TY ILI
Sbjct: 37  VFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHTYGILI 94

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
            C C+ GR+  GF  LG +++  F  +A+TFT L+KGLCA+ R  +A  +   ++    C
Sbjct: 95  GCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSC 154

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            PDVF+ T L+ GLC    +  AL L   MA+  G       PD ++Y+T+ +G  KEG 
Sbjct: 155 MPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSA---PDVVSYTTVINGFFKEGD 211

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLI--------------------------------- 205
            DKA   + +M D  I+PDVVTY+S+I                                 
Sbjct: 212 SDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNS 271

Query: 206 --RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
              G+C +    EA     +M   GV+P+VVT+N +M+ LCKNG+  EA ++ + M + G
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG 331

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           + PD + Y TL+ G+   G +     L   M  NG   D   + ILI  Y K ++++ A+
Sbjct: 332 LEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAM 391

Query: 324 SLYSEMLSKGIRPTVVTY 341
            ++S+M   G+ P VVTY
Sbjct: 392 LVFSKMRQHGLNPNVVTY 409



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 171/335 (51%), Gaps = 6/335 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P V ++N L   L KN        +F  +   GL PD+ TY  L+  +   G 
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGA 351

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L  ++R+   PD   F  LI     + ++ EA  +F+K+R  G  P+V TY  
Sbjct: 352 LVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGA 411

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I  LC++G    A+  FE+M +          P+ I Y+++   LC     DKA+EL L
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEG------LTPNIIVYTSLIHSLCIFDKWDKAEELIL 465

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M D  I  + + + S+I   C      E++ LF  M+  GV+PNV+T++ +++  C  G
Sbjct: 466 EMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAG 525

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           KMDEA++LL  M  +G++PD   YNTL++G+C   R++ A  LF  M S+G   ++ +Y 
Sbjct: 526 KMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYN 585

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I++ G    +    A  LY  +   G +  + TYN
Sbjct: 586 IILQGLFHTRRTAAAKELYVGITKSGTQLELSTYN 620



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 175/366 (47%), Gaps = 41/366 (11%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V S+  +     K    D   S +  +    + PD+ TY+ +I   CK   +    
Sbjct: 192 SAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAM 251

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            VL  ++++   P+ +T+ S++ G C+  +  EA     K+R+ G +PDV TY +L++ L
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYL 311

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF-------------- 178
           C+ G +  A  +F+ M     E      PD  TY T+  G   +G               
Sbjct: 312 CKNGRSTEARKIFDSMTKRGLE------PDIATYCTLLQGYATKGALVEMHALLDLMVRN 365

Query: 179 ---------------------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
                                VD+A  +F KM+   +NP+VVTY ++I   C +   ++A
Sbjct: 366 GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDA 425

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
              F +M+D+G+ PN++ +  +++ LC   K D+A  L+  M+  G+  +   +N+++  
Sbjct: 426 MLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHS 485

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  GRV  +++LF  M   G   +V +Y  LI+GYC   +++ A  L S M S G++P 
Sbjct: 486 HCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545

Query: 338 VVTYNT 343
            VTYNT
Sbjct: 546 CVTYNT 551



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 171/369 (46%), Gaps = 46/369 (12%)

Query: 2   CIFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
            + D M+R  +HP       FNIL    AK +  D  + +F ++   GL P++ TY  +I
Sbjct: 357 ALLDLMVRNGIHPDHHV---FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVI 413

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC--------------------- 98
              CK G V    +   +++    TP+ + +TSLI  LC                     
Sbjct: 414 GILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGIC 473

Query: 99  --------------AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
                          E R++E+  LF  +   G KP+V TY+TLI+G C  G    A  L
Sbjct: 474 LNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKL 533

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
              M      F V  KPD +TY+T+ +G C+   +D A  LF +M    ++P+++TY  +
Sbjct: 534 LSSM------FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNII 587

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           ++G  +      AK L++ +   G Q  + T+N+I++ LCKN   DEA R+ + +    +
Sbjct: 588 LQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDL 647

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
           + +   +N ++      GR + AK+LFV+  SNG + + ++Y ++         +E    
Sbjct: 648 QLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQ 707

Query: 325 LYSEMLSKG 333
           L+  M   G
Sbjct: 708 LFFSMEDNG 716



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 127/275 (46%), Gaps = 9/275 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +FD M+R+   P  +    ++ G CLA     D    L   + S+G+ PD  TYN LIN 
Sbjct: 498 LFDLMVRIGVKPNVITYSTLIDGYCLAGK--MDEATKLLSSMFSVGMKPDCVTYNTLING 555

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +C++ R+     +   ++ S  +P+ +T+  +++GL    R   A  L+  +   G + +
Sbjct: 556 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLE 615

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY  +++GLC+   T  AL +F+ +   + +       +  T++ +   L K G  D+
Sbjct: 616 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVGRNDE 669

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK+LF+      + P+  TY  +           E   LF  M D G   +    N I+ 
Sbjct: 670 AKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVR 729

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           EL + G++  A   L ++ +     +AS  +  +D
Sbjct: 730 ELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P V TY  LI   C A   +        ++ +G +   +TF  ++  LC + +  +A 
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 254 RL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN---GCMRDVFSYGIL 309
            + L  M ++   PD      L+ G C   R   A EL   M  +   G   DV SY  +
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ING+ K  + + A S Y EML + I P VVTY++
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSS 236


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 185/328 (56%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K +  D    L + +   GL P+L +YN++IN  C+ GR+     V
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFV 297

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R  ++ D VT+ +LIKG C E    +A  +  ++   G  P V TYT+LI+ +C+
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+   ++M         +C P+  TY+T+ DG  ++G++++A  +  +M D   
Sbjct: 358 AGNMNRAMEFLDQM-----RVRGLC-PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF 411

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P VVTY +LI G C      +A  +  +M ++G+ P+VV+++ +++  C++  +DEA R
Sbjct: 412 SPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALR 471

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M++ G++PD   Y++L+ GFC   R   A +L+  M   G   D F+Y  LIN YC
Sbjct: 472 VKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYC 531

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              ++E AL L++EM+ KG+ P VVTY+
Sbjct: 532 MEGDLEKALQLHNEMVEKGVLPDVVTYS 559



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 174/329 (52%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N++   L +      V  +   +N  G   D  TYN LI  +CK G      V+
Sbjct: 273 PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVM 332

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +LR   TP  +T+TSLI  +C    +  A     ++R  G  P+  TYTTL++G  +
Sbjct: 333 HAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQ 392

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  +  EM N NG       P  +TY+ + +G C  G ++ A  +   MK++ +
Sbjct: 393 KGYMNEAYRVLREM-NDNG-----FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL 446

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDVV+Y++++ GFC + D +EA  +  EM+++G++P+ +T++ ++   C+  +  EA  
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M+++G+ PD   Y  L++ +C+ G + +A +L   M   G + DV +Y +LING  
Sbjct: 507 LYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLN 566

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K      A  L  ++  +   P+ VTY+T
Sbjct: 567 KQSRTREAKRLLLKLFYEESVPSDVTYHT 595



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 176/339 (51%), Gaps = 7/339 (2%)

Query: 6   YMLRMHPSPPPVCSFN-ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           ++ + H   P V S+N +L   +   ++     ++FK +    + P+++TYNILI  FC 
Sbjct: 158 HLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCF 217

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
            G +     +  ++      P+ VT+ +LI G C   +I +   L   +   G +P++ +
Sbjct: 218 AGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLIS 277

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  +INGLCR G       +  EM N  G        D +TY+T+  G CKEG   +A  
Sbjct: 278 YNVVINGLCREGRMKEVSFVLTEM-NRRG-----YSLDEVTYNTLIKGYCKEGNFHQALV 331

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +  +M    + P V+TYTSLI   C A + N A     +M  +G+ PN  T+  +++   
Sbjct: 332 MHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS 391

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           + G M+EA R+L  M   G  P    YN L++G C+TG++  A  +   M+  G   DV 
Sbjct: 392 QKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVV 451

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           SY  +++G+C++ +++ AL +  EM+ KGI+P  +TY++
Sbjct: 452 SYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSS 490



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 170/325 (52%), Gaps = 7/325 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR-VSPGFVVLGRI 78
           F+++    ++    D  LS+     + G  P + +YN +++   +  R +S    V   +
Sbjct: 137 FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM 196

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L S  +P+  T+  LI+G C    I  A  LF K+   GC P+V TY TLI+G C+    
Sbjct: 197 LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
                L   MA    E      P+ I+Y+ + +GLC+EG + +   +  +M     + D 
Sbjct: 257 DDGFKLLRSMALKGLE------PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE 310

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY +LI+G+C   ++++A  +  EM+  G+ P+V+T+  +++ +CK G M+ A   L+ 
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M   G+ P+   Y TL+DGF   G +N A  +   M  NG    V +Y  LING+C   +
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK 430

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           +E A+++  +M  KG+ P VV+Y+T
Sbjct: 431 MEDAIAVLEDMKEKGLSPDVVSYST 455



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 181/349 (51%), Gaps = 22/349 (6%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           MLR H   P V ++  L   + K  + +  +    ++   GL P+  TY  L++ F + G
Sbjct: 336 MLR-HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            ++  + VL  +  + F+P  VT+ +LI G C   ++ +A A+   ++  G  PDV +Y+
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           T+++G CR+     AL +  EM     E G+  KPD ITYS++  G C++    +A +L+
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMV----EKGI--KPDTITYSSLIQGFCEQRRTKEACDLY 508

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M    + PD  TYT+LI  +C   D  +A  L  EM+++GV P+VVT++V++N L K 
Sbjct: 509 EEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQ 568

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMD---------------GFCLTGRVNRAKELF 291
            +  EA RLL  +      P    Y+TL++               GFC+ G +  A ++F
Sbjct: 569 SRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVF 628

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            SM       D  +Y I+I+G+C+  +I  A +LY EM+  G     VT
Sbjct: 629 ESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVT 677



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 140/334 (41%), Gaps = 56/334 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L          +  +++ + +   GL PD+ +Y+ +++ FC+   V     V
Sbjct: 413 PSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRV 472

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD +T++SLI+G C + R  EA  L+ ++   G  PD FTYT LIN  C 
Sbjct: 473 KREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCM 532

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK------ 188
            G    AL L  EM     E GV+  PD +TYS + +GL K+    +AK L LK      
Sbjct: 533 EGDLEKALQLHNEMV----EKGVL--PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEES 586

Query: 189 --------------------------------------------MKDENINPDVVTYTSL 204
                                                       M  +N  PD   Y  +
Sbjct: 587 VPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIM 646

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I G C A D  +A  L+ EM+  G   + VT   ++  L K GK++E + ++  +++   
Sbjct: 647 IHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCE 706

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
             +A     L++     G ++   ++   M  +G
Sbjct: 707 LSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDG 740


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 181/333 (54%), Gaps = 12/333 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFK-RLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V  +NI+   L +       L +F+  +   G+ P + TYN +IN  CK   +  G  + 
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             ++     PD VT+ +LI  LC    + EA  L   + + GC P+V TY+ LINGLC+ 
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN-- 193
           G    A  L +EM   + +      P+ ITY++  DGLCK+    +A EL   ++D +  
Sbjct: 121 GRIDEARELIQEMTRKSCDV----LPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR 176

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           ++PD VT+++LI G C     +EA  +F +M+  G  PNV+T+N ++N LCK  KM+ A 
Sbjct: 177 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 236

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF-----SYGI 308
            ++E M+  GV PD   Y+ L+D FC   RV+ A EL   M S GC  +V      ++ I
Sbjct: 237 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNI 296

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           LI G CK    E A +L+ EM++K ++P V+T+
Sbjct: 297 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTF 329



 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 187/366 (51%), Gaps = 38/366 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K    +    L   ++S G  P++ TY++LIN  CK+GR+     +
Sbjct: 70  PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEAREL 129

Query: 75  LGRILR-SC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLR--AFGCKPDVFTYTTLIN 130
           +  + R SC   P+ +T+ S + GLC +S   EA  L   LR  +    PD  T++TLI+
Sbjct: 130 IQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLID 189

Query: 131 GLCRTGHTIVALNLFEEMANG---------NGEFGVVCK--------------------P 161
           GLC+ G    A ++F++M  G         N     +CK                    P
Sbjct: 190 GLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTP 249

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV-----VTYTSLIRGFCYANDWNE 216
           D ITYS + D  CK   VD+A EL   M      P+V     VT+  LI G C A ++ +
Sbjct: 250 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQ 309

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  LF EM+ + +QP+V+TF  +++ LCK G+++ A  +L+LM  +GV P+   YN L+ 
Sbjct: 310 ASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVH 369

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C +GR+  A +    M S+GC+ D  +YG L+   C+    + AL L SE+ S G  P
Sbjct: 370 GLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDP 429

Query: 337 TVVTYN 342
             VTYN
Sbjct: 430 DTVTYN 435



 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 176/336 (52%), Gaps = 11/336 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L K+      + LF+ L   G  PD+ TYN LI+  CK G +     +
Sbjct: 35  PTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRL 94

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK--PDVFTYTTLINGL 132
            G +      P+ VT++ LI GLC   RI EA  L  ++    C   P++ TY + ++GL
Sbjct: 95  HGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 154

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+   T  A  L   + +G+    +   PD +T+ST+ DGLCK G +D+A  +F  M   
Sbjct: 155 CKQSMTAEACELMRSLRDGS----LRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAG 210

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              P+V+TY +L+ G C A+    A  +   M+D+GV P+V+T++V+++  CK  ++DEA
Sbjct: 211 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 270

Query: 253 SRLLELMIQIG-----VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
             LL  M   G     + PD   +N L+ G C  G   +A  LF  M +     DV ++G
Sbjct: 271 LELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFG 330

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LI+G CK  ++E A  +   M + G+ P VVTYN 
Sbjct: 331 ALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNA 366



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 175/329 (53%), Gaps = 3/329 (0%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL--NSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P + ++N     L K         L + L   S+ + PD  T++ LI+  CK G++    
Sbjct: 142 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEAC 201

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V   ++   + P+ +T+ +L+ GLC   ++  A A+   +   G  PDV TY+ L++  
Sbjct: 202 SVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 261

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+      AL L   MA+  G    V  PD +T++ +  G CK G  ++A  LF +M  +
Sbjct: 262 CKASRVDEALELLHGMAS-RGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 320

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N+ PDV+T+ +LI G C A     A+ +   M + GV PNVVT+N +++ LCK+G+++EA
Sbjct: 321 NLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEA 380

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            + LE M+  G  PD+  Y +L+   C   R + A +L   ++S G   D  +Y IL++G
Sbjct: 381 CQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDG 440

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             K+ + E A+++  EM+ KG +P   T+
Sbjct: 441 LWKSGKTEQAITVLEEMVGKGHQPDSFTF 469



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 165/331 (49%), Gaps = 11/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F+ L   L K    D   S+F  + + G  P++ TYN L+N  CK  ++     +
Sbjct: 179 PDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAM 238

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF-----TYTTLI 129
           +  ++    TPD +T++ L+   C  SR+ EA  L   + + GC P+V      T+  LI
Sbjct: 239 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILI 298

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G C+ G+   A  LFEEM   N       +PD +T+  + DGLCK G V+ A+++   M
Sbjct: 299 AGACKAGNFEQASALFEEMVAKN------LQPDVMTFGALIDGLCKAGQVEAARDILDLM 352

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            +  + P+VVTY +L+ G C +    EA     EM+  G  P+ +T+  ++  LC+  + 
Sbjct: 353 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 412

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+A +L+  +   G  PD   YN L+DG   +G+  +A  +   M   G   D F++   
Sbjct: 413 DDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAAC 472

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +G  ++  + G + L   +L+KG+ P   T
Sbjct: 473 FSGLHRSGNLAGTMELLRVVLAKGMLPDATT 503



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 165/319 (51%), Gaps = 11/319 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K    +   ++ + +   G+ PD+ TY++L++ FCK  RV     +
Sbjct: 214 PNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALEL 273

Query: 75  L-GRILRSC----FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
           L G   R C      PD VTF  LI G C      +A+ALF ++ A   +PDV T+  LI
Sbjct: 274 LHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALI 333

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           +GLC+ G    A ++ + M N     GV   P+ +TY+ +  GLCK G +++A +   +M
Sbjct: 334 DGLCKAGQVEAARDILDLMGN----LGV--PPNVVTYNALVHGLCKSGRIEEACQFLEEM 387

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
                 PD +TY SL+   C A+  ++A  L  E+   G  P+ VT+N++++ L K+GK 
Sbjct: 388 VSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKT 447

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           ++A  +LE M+  G +PD+  +     G   +G +    EL   + + G + D  +   +
Sbjct: 448 EQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSI 507

Query: 310 INGYCKNKEIEGALSLYSE 328
           ++  C++ +++   ++  E
Sbjct: 508 LDWVCRSGKLDDVKAMIKE 526



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 20/309 (6%)

Query: 1   FCIFDYMLRMHP---------SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---- 47
            C  D M R H            P V ++++L     K    D  L L   + S G    
Sbjct: 226 LCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPN 285

Query: 48  -LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
            L PD  T+NILI   CK G       +   ++     PD +TF +LI GLC   ++  A
Sbjct: 286 VLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAA 345

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +   +   G  P+V TY  L++GLC++G    A    EEM +        C PD+ITY
Sbjct: 346 RDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG------CVPDSITY 399

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
            ++   LC+    D A +L  ++K    +PD VTY  L+ G   +    +A  +  EM+ 
Sbjct: 400 GSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVG 459

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G QP+  TF    + L ++G +     LL +++  G+ PDA+  ++++D  C +G+++ 
Sbjct: 460 KGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDD 519

Query: 287 AKELFVSME 295
            K +    E
Sbjct: 520 VKAMIKEFE 528



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 129/228 (56%), Gaps = 13/228 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFE-EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           V  Y  ++  LCR G T  AL +F  EMA      GV   P  +TY+TI +GLCK   + 
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARD----GVA--PTIVTYNTIINGLCKSNDLG 54

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
              ELF ++ +   +PDVVTY +LI   C A D  EA+ L  +M  +G  PNVVT++V++
Sbjct: 55  AGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLI 114

Query: 241 NELCKNGKMDEASRLLELMIQIG--VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           N LCK G++DEA  L++ M +    V P+   YN+ +DG C       A EL  S+  +G
Sbjct: 115 NGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR-DG 173

Query: 299 CMR---DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +R   D  ++  LI+G CK  +I+ A S++ +M++ G  P V+TYN 
Sbjct: 174 SLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNA 221


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 195/368 (52%), Gaps = 30/368 (8%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M+ M+P P  V       G +AK K Y TV+SL  +++  G+  + YT NILIN  C
Sbjct: 74  FYRMIHMNPRPSFV-ELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLC 132

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++  +     VL ++ +    PD+VTFT+LI GLC E RI EA  LF ++      P+  
Sbjct: 133 RLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTV 192

Query: 124 TYTTLINGLCRTGHTIVALNLFE-------------------------EMANGNGEFGVV 158
           T+T L++ LC+ G    A  +FE                         EM + +  F ++
Sbjct: 193 TFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIM 252

Query: 159 ----CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
               C P   +YS + +G CK   +D+AK L  +M ++ + P+ VTY +L++G C+A+  
Sbjct: 253 VGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSL 312

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            EA+ LF +M   G+ PN+ T++++++ LCK+G ++EA +LL  M +  + PD  +YN L
Sbjct: 313 LEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNIL 372

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + G  + G++  AKELF  + +NG    V +Y I+I G  K    + A  L+ +M   G 
Sbjct: 373 IQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGF 432

Query: 335 RPTVVTYN 342
            P   +YN
Sbjct: 433 LPDSCSYN 440



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 156/327 (47%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L   L         + LF  +      P+  T+ IL++  CK G VS    V
Sbjct: 154 PDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCV 213

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+  T+ +L+ G C    + +A+ +F  +   GC P V +Y+ LING C+
Sbjct: 214 FETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCK 273

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A  L  +M+           P+ +TY+T+  GLC    + +A+ELF KM    +
Sbjct: 274 SRRIDEAKALLTQMSEKE------LIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGM 327

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ TY+ L+ G C      EA  L   M ++ ++P++V +N+++  +   GK++ A  
Sbjct: 328 LPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKE 387

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G+RP    YN ++ G    G  + A +LF  ME +G + D  SY ++I G+ 
Sbjct: 388 LFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFL 447

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +N++   A+ L  EM+ +       T+
Sbjct: 448 QNQDPSTAIQLIDEMVGRRFSADSSTF 474



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 163/326 (50%), Gaps = 23/326 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC---KMGRVSPG 71
           P   +F IL   L K         +F+ +   G+ P++YTYN L+N +C   +M   S  
Sbjct: 189 PNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKV 248

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           F ++  + + C  P   +++ LI G C   RI EA AL T++      P+  TY TL+ G
Sbjct: 249 FEIM--VGKGC-APSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQG 305

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LC     + A  LF++M +     G++  P+  TYS + DGLCK G +++A +L   M++
Sbjct: 306 LCHASSLLEAQELFKKMCSS----GML--PNLRTYSILLDGLCKHGHLEEALKLLTSMQE 359

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             + PD+V Y  LI+G   A     AK LF ++   G++P+V T+N+++  L K G  DE
Sbjct: 360 RKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDE 419

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A +L   M   G  PD+  YN ++ GF      + A +L   M       D  ++ +L++
Sbjct: 420 AYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLD 479

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPT 337
                      L  + E++S+ +R +
Sbjct: 480 -----------LESHDEIISRFMRES 494



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 123/241 (51%), Gaps = 6/241 (2%)

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           I +A A F ++     +P        +  + +       ++L  +M      FGV    +
Sbjct: 67  IDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQM----DLFGVA--HN 120

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
             T + + + LC+   +  A  +  KM    I PD VT+T+LI G C      EA  LF 
Sbjct: 121 DYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFN 180

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM  +   PN VTF ++++ LCK G + EA  + E M + GV P+   YN LM+G+CL  
Sbjct: 181 EMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRL 240

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +N A ++F  M   GC   V SY ILINGYCK++ I+ A +L ++M  K + P  VTYN
Sbjct: 241 EMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYN 300

Query: 343 T 343
           T
Sbjct: 301 T 301


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 183/329 (55%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +FN+L   L K         +F  +   GL P   ++N LIN +CK G +  GF 
Sbjct: 229 PPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFR 288

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      PD  T+++LI GLC E ++ +A  LF ++   G  P+  T+TTLING C
Sbjct: 289 LKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQC 348

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +AL ++++M      F    K D + Y+T+ DGLCK G+  +A++   +M    
Sbjct: 349 KNGRVDLALEIYQQM------FTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRG 402

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+L+ G C   D   A  +  EM+ +G+Q + V F  I++ LC++GK+ +A 
Sbjct: 403 LIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAE 462

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R L  M++ G++PD   Y  +MDGFC  G V    +L   M+S+G +  V +Y +L+NG 
Sbjct: 463 RTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGL 522

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK  +++ A  L + ML+ G+ P  +TYN
Sbjct: 523 CKQGQVKNADMLLNAMLNLGVVPDDITYN 551



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 6/243 (2%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           L++ +   S  M A   + ++   G  P+V+T+  L+N LC+ G    A  +F+E+    
Sbjct: 203 LLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTG 262

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                  +P A++++T+ +G CK G +++   L + M++  + PDV TY++LI G C   
Sbjct: 263 ------LQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKEC 316

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              +A  LF EM D+G+ PN VTF  ++N  CKNG++D A  + + M   G++ D  +YN
Sbjct: 317 QLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYN 376

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           TL+DG C  G    A++    M   G + D F+Y  L++G CK  ++E AL +  EM+ +
Sbjct: 377 TLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKE 436

Query: 333 GIR 335
           GI+
Sbjct: 437 GIQ 439



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 91/162 (56%)

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A E +L++ D    P+V T+  L+   C      +A+ +F E+   G+QP  V+FN ++N
Sbjct: 216 ALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLIN 275

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK+G ++E  RL  +M +  V PD   Y+ L+DG C   ++  A  LF  M   G + 
Sbjct: 276 GYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVP 335

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  ++  LING CKN  ++ AL +Y +M +KG++  +V YNT
Sbjct: 336 NDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNT 377


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 185/329 (56%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + N++   L K   +DT+  ++  + + G  P++ TY  LI+  C+ G     F +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P  V +T LI+GLC ESRI EA ++F  +R  G  P+++TY T+++G C+
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             H   AL L++EM  G+G       P+ +T+  + DGLCK   +  A++  + M    +
Sbjct: 276 IAHVKKALELYQEML-GDGLL-----PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++  Y  LI G+C A + +EA  L  E+    + P+V T+++++  LC   +M+EA  
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G  P+A  YNTL+DG+C  G + +A E+   M   G   ++ ++  LI+GYC
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++E A+ LY+EM+ KG+ P VV Y  
Sbjct: 450 KAGKMEAAMGLYTEMVIKGLLPDVVAYTA 478



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 188/382 (49%), Gaps = 43/382 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M+      P V  + IL   L          S+F+ + + G+ P+LYTYN +++
Sbjct: 213 FRLFDEMIE-KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK+  V     +   +L     P+ VTF  LI GLC    ++ A      + +FG  P
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEE-------------------------MANGNGEF 155
           ++F Y  LI+G C+ G+   AL+L  E                         M   +G  
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391

Query: 156 GVVCK----PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
             + K    P+A+TY+T+ DG CKEG ++KA E+  +M ++ I P+++T+++LI G+C A
Sbjct: 392 QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKA 451

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                A  L+ EM+ +G+ P+VV +  +++   K+G   EA RL + M + G+ P+    
Sbjct: 452 GKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL 511

Query: 272 NTLMDGFCLTGRVNRAKELFVS-------------MESNGCMRDVFSYGILINGYCKNKE 318
           + L+DG C  GR++ A +LF++             ++ + C  +   Y  LI G C +  
Sbjct: 512 SCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGR 571

Query: 319 IEGALSLYSEMLSKGIRPTVVT 340
           I  A   +S+M   G+RP V T
Sbjct: 572 IFKASKFFSDMRCSGLRPDVFT 593



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 175/342 (51%), Gaps = 23/342 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F IL   L K     +       + S G+ P+++ YN LI+ +CK G +S    +
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I +    PD  T++ LIKGLC   R+ EA  L  +++  G  P+  TY TLI+G C+
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+ +  +M     E G+  +P+ IT+ST+ DG CK G ++ A  L+ +M  + +
Sbjct: 416 EGNMEKAIEVCSQMT----EKGI--EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV YT+LI G     +  EA  L  EM + G+ PNV T + +++ LCK+G++ +A +
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK 529

Query: 255 LLELMIQIGV---------------RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           L   + + G                 P+  +Y  L+ G C  GR+ +A + F  M  +G 
Sbjct: 530 LF--LAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGL 587

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             DVF+  ++I G+ +   +   + L +++L  GI P    Y
Sbjct: 588 RPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVY 629



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 164/329 (49%), Gaps = 14/329 (4%)

Query: 18  CSFNILFGCLAKNKHYD---TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           C    L  CL  ++      +V ++  RL S    P+++   +LI  F +MG V     V
Sbjct: 91  CLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWV 148

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++      P       ++ GL  + R      ++  + A G  P+V TY TLI+G CR
Sbjct: 149 YYKM---DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCR 205

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  LF+EM            P  + Y+ +  GLC E  + +A+ +F  M++  +
Sbjct: 206 QGDFLKAFRLFDEMIEKK------IFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGM 259

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ TY +++ G+C      +A  L+ EM+  G+ PNVVTF ++++ LCK  +M  A +
Sbjct: 260 LPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARK 319

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  M   GV P+  VYN L+DG+C  G ++ A  L   +E +  + DVF+Y ILI G C
Sbjct: 320 FLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLC 379

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               +E A  L  EM  KG  P  VTYNT
Sbjct: 380 GVDRMEEADGLLQEMKKKGFLPNAVTYNT 408



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 19/290 (6%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V +++IL   L      +    L + +   G  P+  TYN LI+ +CK G +  
Sbjct: 362 HEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEK 421

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              V  ++      P+ +TF++LI G C   ++  A  L+T++   G  PDV  YT LI+
Sbjct: 422 AIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALID 481

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G  + G+T  A  L +EM     E G+   P+  T S + DGLCK+G +  A +LFL   
Sbjct: 482 GHFKDGNTKEAFRLHKEMQ----EAGL--HPNVFTLSCLIDGLCKDGRISDAIKLFLAKT 535

Query: 191 DENI-------------NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
             +              +P+ V YT+LI+G C      +A   F +M   G++P+V T  
Sbjct: 536 GTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCI 595

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           VI+    +   + +   L   ++++G+ P++SVY  L  G+  +G +  A
Sbjct: 596 VIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSA 645



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 123/257 (47%), Gaps = 7/257 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K  + +  + +  ++   G+ P++ T++ LI+ +CK G++     +
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD V +T+LI G   +    EA  L  +++  G  P+VFT + LI+GLC+
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520

Query: 135 TGHTIVALNLF------EEMANGNGEFG-VVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
            G    A+ LF      +   +   E    +C P+ + Y+ +  GLC +G + KA + F 
Sbjct: 521 DGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFS 580

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M+   + PDV T   +I+G   A    +   L  +++  G+ PN   + V+     ++G
Sbjct: 581 DMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESG 640

Query: 248 KMDEASRLLELMIQIGV 264
            +  A R  E +  IG+
Sbjct: 641 YLKSALRCSEDLSGIGI 657


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 174/305 (57%), Gaps = 9/305 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           + + L   G  PD+ TYN++I+ +CK G ++    VL R+     +PD VT+ ++++ LC
Sbjct: 159 ILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLC 215

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
              ++ +A  +  ++    C PDV TYT LI   CR      A+ L +EM +        
Sbjct: 216 DSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRG------ 269

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C PD +TY+ + +G+CKEG +D+A +    M      P+V+T+  ++R  C    W +A+
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAE 329

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M+ +G  P+VVTFN+++N LC+ G +  A  +LE M + G +P++  YN L+ GF
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGF 389

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   +++RA E    M S GC  D+ +Y  ++   CK+ ++E A+ + +++ SKG  P +
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449

Query: 339 VTYNT 343
           +TYNT
Sbjct: 450 ITYNT 454



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 175/359 (48%), Gaps = 34/359 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N++     K    +  LS+  R++   + PD+ TYN ++   C  G++     V
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 75  LGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L R+L R C+ PD +T+T LI+  C +S + +A  L  ++R  GC PDV TY  L+NG+C
Sbjct: 227 LDRMLQRDCY-PDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCK-----------------------------PDAI 164
           + G    A+    +M +   +  V+                               P  +
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T++ + + LC++G + +A ++  KM      P+ ++Y  L+ GFC     + A      M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + +G  P++VT+N ++  LCK+GK+++A  +L  +   G  P    YNT++DG    G+ 
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +A +L   M +     D  +Y  L+ G  +  +++ A+  + E    G+RP  VT+N+
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNS 524



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 168/327 (51%), Gaps = 6/327 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P V ++N+L   + K    D  +     + S G  P++ T+NI++   C  GR
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 +L  +LR  F+P  VTF  LI  LC +  +  A  +  K+   GC+P+  +Y  
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNP 384

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L++G C+      A+   E M +        C PD +TY+T+   LCK+G V+ A E+  
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRG------CYPDIVTYNTMLTALCKDGKVEDAVEILN 438

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++  +  +P ++TY ++I G   A    +A  L  EM  + ++P+ +T++ ++  L + G
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREG 498

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+DEA +      ++GVRP+A  +N++M G C T + +RA +  V M + GC     SY 
Sbjct: 499 KVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYT 558

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGI 334
           ILI G       + AL L +E+ +KG+
Sbjct: 559 ILIEGLAYEGMAKEALELLNELCNKGL 585



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 161/330 (48%), Gaps = 27/330 (8%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F   NS  +  D+ + N L     + G +  GF  L  ++     PD +  T+LI+G C 
Sbjct: 91  FSSANSSFVLEDVESNNHLRQ-LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCR 149

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG-------- 151
             +  +AA +   L   G  PDV TY  +I+G C+ G    AL++ + M+          
Sbjct: 150 MGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNT 209

Query: 152 -------NGEFGVV-----------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                  +G+               C PD ITY+ + +  C++  V +A +L  +M+D  
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRG 269

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PDVVTY  L+ G C     +EA     +M   G QPNV+T N+I+  +C  G+  +A 
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAE 329

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +LL  M++ G  P    +N L++  C  G + RA ++   M  +GC  +  SY  L++G+
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGF 389

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK K+++ A+     M+S+G  P +VTYNT
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 170/339 (50%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML+     P V ++ IL     ++      + L   +   G  PD+ TYN+L+N  
Sbjct: 226 VLDRMLQ-RDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGI 284

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR+      L  +  S   P+ +T   +++ +C+  R M+A  L   +   G  P V
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  LIN LCR G    A+++ E+M          C+P++++Y+ +  G CKE  +D+A
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPKHG------CQPNSLSYNPLLHGFCKEKKMDRA 398

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E   +M      PD+VTY +++   C      +A  +  ++  +G  P ++T+N +++ 
Sbjct: 399 IEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDG 458

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L K GK  +A +LL+ M    ++PD   Y++L+ G    G+V+ A + F   E  G   +
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPN 518

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             ++  ++ G CK ++ + A+     M+++G +PT  +Y
Sbjct: 519 AVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSY 557



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 143/287 (49%), Gaps = 6/287 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + NI+   +     +     L   +   G  P + T+NILIN  C+ G +     +
Sbjct: 307 PNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDI 366

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ +    P+++++  L+ G C E ++  A     ++ + GC PD+ TY T++  LC+
Sbjct: 367 LEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCK 426

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ +  ++++        C P  ITY+T+ DGL K G   KA +L  +M+ +++
Sbjct: 427 DGKVEDAVEILNQLSSKG------CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +TY+SL+ G       +EA   F E    GV+PN VTFN IM  LCK  + D A  
Sbjct: 481 KPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAID 540

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            L  MI  G +P  + Y  L++G    G    A EL   + + G M+
Sbjct: 541 FLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLMK 587



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 135/257 (52%), Gaps = 8/257 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FNIL   L +       + + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 75  LGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L R++ R C+ PD VT+ +++  LC + ++ +A  +  +L + GC P + TY T+I+GL 
Sbjct: 402 LERMVSRGCY-PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T  A+ L +EM   +       KPD ITYS++  GL +EG VD+A + F + +   
Sbjct: 461 KAGKTGKAIKLLDEMRAKD------LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+ VT+ S++ G C     + A    + M+++G +P   ++ +++  L   G   EA 
Sbjct: 515 VRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEAL 574

Query: 254 RLLELMIQIGVRPDASV 270
            LL  +   G+   +S 
Sbjct: 575 ELLNELCNKGLMKRSSA 591


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 185/329 (56%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L K+  Y    +L + +      P  +T+N++I+ FCK+G++   + +
Sbjct: 339 PNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYEL 398

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD  T+  +I G C  +RI +A  L  ++   GC PDV TY ++++GLC+
Sbjct: 399 FQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCK 458

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  ++E + NG G F      D +T ST+ DGLCK   +D A++L  +M+    
Sbjct: 459 ASQVDEAYEVYEVLRNG-GYF-----LDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS 512

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV YT LI GFC A+  +++   F EM+D+G  P V+T+++++++LCK+ ++ +   
Sbjct: 513 APDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCM 572

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M++ GV PDA VY +++DG C +   + A EL+  M+  GC   V +Y +L++  C
Sbjct: 573 LLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLC 632

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   ++ A+ L   M S G  P  VTYN+
Sbjct: 633 KVSRLDEAIHLLEVMESDGCLPDTVTYNS 661



 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 185/363 (50%), Gaps = 42/363 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N +   L  N   D+ L  ++ +      P + TY IL++  CK  R+S   ++
Sbjct: 200 PHNAVYNTIIKGLCDNGRVDSALVHYRDMQR-NCAPSVITYTILVDALCKSARISDASLI 258

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   P+ VT+ +LI G C    + EA  LF ++    C PDVFTY  LI+G C+
Sbjct: 259 LEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCK 318

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL--------------------- 173
                    L +EM     ++G  C+P+ ITY+T+ D L                     
Sbjct: 319 QERPQDGAKLLQEMV----KYG--CEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDC 372

Query: 174 --------------CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                         CK G +D A ELF  M D    PD+ TY  +I G C AN  ++A+ 
Sbjct: 373 KPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQ 432

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L   M + G  P+VVT+N I++ LCK  ++DEA  + E++   G   D    +TL+DG C
Sbjct: 433 LLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLC 492

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            + R++ A++L   ME NG   DV +Y ILI+G+CK  +++ +L+ +SEML KG  PTV+
Sbjct: 493 KSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVI 552

Query: 340 TYN 342
           TY+
Sbjct: 553 TYS 555



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 164/319 (51%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NI+     +    D    L +R+   G  PD+ TYN +++  CK  +V   + V
Sbjct: 409 PDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEV 468

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +    +  D VT ++LI GLC   R+ +A  L  ++   G  PDV  YT LI+G C+
Sbjct: 469 YEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCK 528

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 +L  F EM +        C P  ITYS + D LCK   V     L   M +  +
Sbjct: 529 ADQLDKSLAFFSEMLDKG------CVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 582

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD + YTS+I G C ++ ++EA  L+  M   G  P VVT+NV++++LCK  ++DEA  
Sbjct: 583 TPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIH 642

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE+M   G  PD   YN++ DGF  +   ++A  LF +M+S GC    F Y +L+    
Sbjct: 643 LLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLV 702

Query: 315 KNKEIEGALSLYSEMLSKG 333
             ++++ A+ ++ E L  G
Sbjct: 703 AEEKMDQAMEIWEEALEAG 721



 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 166/323 (51%), Gaps = 7/323 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N L     + K       LFK        PD  TY+ LIN FCK       + +L  + +
Sbjct: 136 NCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 195

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P    + ++IKGLC   R+  A   +  ++   C P V TYT L++ LC++     
Sbjct: 196 RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR-NCAPSVITYTILVDALCKSARISD 254

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A  + E+M          C P+ +TY+T+ +G CK G +D+A  LF +M + + +PDV T
Sbjct: 255 ASLILEDMIEAG------CAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFT 308

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  LI G+C      +   L  EM+  G +PN +T+N +M+ L K+GK  +A  L ++M+
Sbjct: 309 YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMML 368

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           +   +P    +N ++D FC  G+++ A ELF  M   GC+ D+++Y I+I+G C+   I+
Sbjct: 369 RRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRID 428

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A  L   M   G  P VVTYN+
Sbjct: 429 DARQLLERMTEAGCPPDVVTYNS 451



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 122/259 (47%), Gaps = 6/259 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V + + L   L K++  D    L + +   G  PD+  Y ILI+ FCK  ++        
Sbjct: 481 VVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFS 540

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L     P  +T++ +I  LC  +R+ +   L   +   G  PD   YT++I+GLC++ 
Sbjct: 541 EMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSD 600

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L++ M          C P  +TY+ + D LCK   +D+A  L   M+ +   P
Sbjct: 601 SYDEAYELYKLMKQTG------CAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLP 654

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTY S+  GF  + + ++A  LF  M  +G  P    +++++ +L    KMD+A  + 
Sbjct: 655 DTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIW 714

Query: 257 ELMIQIGVRPDASVYNTLM 275
           E  ++ G   D  +  TL 
Sbjct: 715 EEALEAGADVDPEISRTLQ 733



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 38/83 (45%)

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           Q G +      N L+  F    +   A +LF +     C  D  +Y  LING+CK ++ +
Sbjct: 125 QPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQ 184

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A  L  EM  +GI P    YNT
Sbjct: 185 QAYRLLDEMEKRGIVPHNAVYNT 207



 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 48/114 (42%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L K    D  + L + + S G  PD  TYN + + F K       F +
Sbjct: 619 PTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRL 678

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
              +     +P    ++ L+  L AE ++ +A  ++ +    G   D     TL
Sbjct: 679 FQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRTL 732


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 189/342 (55%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ML+  P  P +  F  +   +AK   +D V+ L+ ++ ++G+  DLY++ ILI+
Sbjct: 64  FSLFCEMLQSRP-IPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIH 122

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CFC+  R+S    +LG++++  F P  VT  SL+ G C  +R  EA +L   +  FG  P
Sbjct: 123 CFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP 182

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V  Y T+INGLC+      AL +F  M           + DA+TY+T+  GL   G   
Sbjct: 183 NVVIYNTVINGLCKNRDLNNALEVFYCMEKKG------IRADAVTYNTLISGLSNSGRWT 236

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  L   M    I+P+V+ +T+LI  F    +  EA+ L+ EM+ + V PNV T+N ++
Sbjct: 237 DAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLI 296

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N  C +G + +A  + +LM+  G  PD   YNTL+ GFC + RV    +LF  M   G +
Sbjct: 297 NGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLV 356

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            D F+Y  LI+GYC+  ++  A  +++ M+  G+ P +VTYN
Sbjct: 357 GDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYN 398



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 167/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L KN+  +  L +F  +   G+  D  TYN LI+     GR +    +
Sbjct: 182 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARL 241

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    P+ + FT+LI     E  ++EA  L+ ++      P+VFTY +LING C 
Sbjct: 242 LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCI 301

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F+ M +        C PD +TY+T+  G CK   V+   +LF +M  + +
Sbjct: 302 HGCLGDAKYMFDLMVSKG------CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGL 355

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D  TY +LI G+C A   N A+ +F  M+D GV P++VT+N++++ LC NGK+++A  
Sbjct: 356 VGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALV 415

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           ++E + +  +  D   YN ++ G C T ++  A  LF S+   G   D  +Y  +I+G C
Sbjct: 416 MVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLC 475

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +      A  L   M   G  P+   Y+
Sbjct: 476 RKGLQREADKLCRRMKEDGFMPSERIYD 503



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 6/192 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K+K  +  + LF  +   GL  D +TYN LI+ +C+ G+++    V
Sbjct: 322 PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKV 381

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++    +PD VT+  L+  LC   +I +A  +   L+      D+ TY  +I GLCR
Sbjct: 382 FNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCR 441

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A  LF  +       GV  KPDAI Y T+  GLC++G   +A +L  +MK++  
Sbjct: 442 TDKLKEAWCLFRSLTRK----GV--KPDAIAYITMISGLCRKGLQREADKLCRRMKEDGF 495

Query: 195 NPDVVTYTSLIR 206
            P    Y   +R
Sbjct: 496 MPSERIYDETLR 507



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 65/143 (45%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y   +R   +   +++A  LF EM+     P++V F  ++  + K  K D    L   M 
Sbjct: 47  YRERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKME 106

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
            +G+  D   +  L+  FC   R++ A  L   M   G    + + G L+NG+C+    +
Sbjct: 107 NLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQ 166

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A+SL   M   G  P VV YNT
Sbjct: 167 EAVSLVDSMDGFGFVPNVVIYNT 189


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 117/261 (44%), Positives = 158/261 (60%), Gaps = 24/261 (9%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
            +PD  T   L   LC  +R+ E  A  T +   G  PD+ TY TLI GLCR  H I   
Sbjct: 6   LSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRV-HRI--- 61

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
                               ++    I DGLCK G  D+AKE+F +MK + + P+V++Y+
Sbjct: 62  --------------------SVATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYS 101

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           SL+ GFC A    E+K LF EM+DQGVQPN+V FNV+++ LCK GK+ EA +LLE+ IQ 
Sbjct: 102 SLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQR 161

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G+  D   YN+L+DGFC  G ++ A++LF+SM S GC  +  SY ILINGYCK  ++E A
Sbjct: 162 GIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEA 221

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           ++LY+EM   G RP V TY+T
Sbjct: 222 MNLYNEMPQVGKRPNVKTYST 242



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 173/313 (55%), Gaps = 23/313 (7%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM-- 104
           GL PDL+T NIL NC C + RVS G   +  ILR  + PD VT+ +LIKGLC   RI   
Sbjct: 5   GLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVA 64

Query: 105 ---------------EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
                          EA  +F +++A G  P+V +Y++L++G C  G    +  LF EM 
Sbjct: 65  TCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMV 124

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           +     GV  +P+ + ++ + D LCKEG V +AK+L        I  D+VTY SLI GFC
Sbjct: 125 DQ----GV--QPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFC 178

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
              D + A+ LF+ M  +G + N +++ +++N  CK  K++EA  L   M Q+G RP+  
Sbjct: 179 KIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVK 238

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y+TL+ G   TG+V  A +LF  M+++G   D   Y I ++G CKN  +  A+ L++E+
Sbjct: 239 TYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNEL 298

Query: 330 LSKGIRPTVVTYN 342
            S   +    +Y+
Sbjct: 299 KSYNFKLDFESYS 311



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 168/336 (50%), Gaps = 16/336 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNIL---FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           IF+ M +     P V S++ L   F C  K    +    LF  +   G+ P+L  +N+LI
Sbjct: 84  IFEEM-KAQGMIPNVISYSSLVHGFCCAGK---LEESKRLFNEMVDQGVQPNLVQFNVLI 139

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +  CK G+V     +L   ++     D VT+ SLI G C    +  A  LF  + + GC+
Sbjct: 140 DILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCE 199

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
            +  +YT LING C+      A+NL+ EM        V  +P+  TYST+  GL + G V
Sbjct: 200 HNEISYTILINGYCKIWKVEEAMNLYNEMPQ------VGKRPNVKTYSTLLTGLLQTGKV 253

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
             A +LF  MK   I+ D   Y   + G C      EA  LF E+     + +  +++ +
Sbjct: 254 GDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRL 313

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME---S 296
           ++ LCK GK++ A    + + Q G++P+    N ++ GFC   +V++A  LF  ME    
Sbjct: 314 IDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEE 373

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           NGC  D+ +Y  L+ G+C++ ++E  ++L  +M  +
Sbjct: 374 NGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFKR 409


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 190/341 (55%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF  ML    SP  + SF+ L G  ++N H D  L  F+ + + GL PD   Y ILIN +
Sbjct: 312 IFSDMLHRGVSPDLI-SFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGY 370

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G +S    +  ++L      D V + +++ GLC +  + +A ALF ++   G  PD 
Sbjct: 371 CRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDF 430

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+TTLI+G C+ G+   AL+LF  M   N       KPD +TY+ + DG CK   ++KA
Sbjct: 431 CTFTTLIHGHCKEGNMGKALSLFGIMTQKN------IKPDIVTYNILIDGFCKTTEMEKA 484

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL+ +M    I P+ ++Y  L+ G+C     +EA  L+ EM+ +G++P +VT N ++  
Sbjct: 485 NELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKG 544

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C++G + +A   L  MI  GV PD+  YNTL++GF     +++A  L   ME+ G   D
Sbjct: 545 YCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPD 604

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +Y +++NG+C+   ++ A  +  +M+ +GI P   TY T
Sbjct: 605 VVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTT 645



 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 180/358 (50%), Gaps = 33/358 (9%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V + NI+   L K+   D V      +   G+F D+ TYN LIN +C+ G +   F V+ 
Sbjct: 185 VYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMN 244

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P   T+ ++I GLC + R + A  +F ++ + G  PD  TY TL+   CR  
Sbjct: 245 SMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNN 304

Query: 137 HTIVALNLFEEM------------------ANGNGEF-------------GVVCKPDAIT 165
           + + A ++F +M                  ++ NG               G+V  PD + 
Sbjct: 305 NFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLV--PDNVI 362

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ + +G C+ G + +A E+  KM ++    DVV Y +++ G C      +A  LF EM+
Sbjct: 363 YTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMV 422

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++GV P+  TF  +++  CK G M +A  L  +M Q  ++PD   YN L+DGFC T  + 
Sbjct: 423 ERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEME 482

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +A EL+  M S     +  SY IL+NGYC    +  A  L+ EM+ KGI+PT+VT NT
Sbjct: 483 KANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNT 540



 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 184/340 (54%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ ML +  SP    ++N L     +N ++     +F  +   G+ PDL +++ LI   
Sbjct: 277 VFNEMLSIGLSPD-TTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVS 335

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + G +    +    +  S   PD V +T LI G C    + EA  +  K+   GC  DV
Sbjct: 336 SRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDV 395

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y T++NGLC+      A  LF+EM     E GVV  PD  T++T+  G CKEG + KA
Sbjct: 396 VAYNTILNGLCKKKLLADANALFDEMV----ERGVV--PDFCTFTTLIHGHCKEGNMGKA 449

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF  M  +NI PD+VTY  LI GFC   +  +A  L+ EM+ + + PN +++ +++N 
Sbjct: 450 LSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNG 509

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G + EA RL + MI+ G++P     NT++ G+C +G +++A E    M S G   D
Sbjct: 510 YCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPD 569

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  LING+ K + ++ A  L ++M +KG++P VVTYN
Sbjct: 570 SITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYN 609



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 160/324 (49%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++L     + +  +     FK L   G    +   N L+    KMG V   + V   I 
Sbjct: 118 FDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIA 177

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           RS    +  T   ++  LC + +I +       +   G   D+ TY TLIN  CR G   
Sbjct: 178 RSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLG 237

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  +   M+      G   KP   TY+ + +GLCK+G   +AK +F +M    ++PD  
Sbjct: 238 EAFEVMNSMS------GKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTT 291

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY +L+   C  N++ EAK +F +M+ +GV P++++F+ ++    +NG +D+A      M
Sbjct: 292 TYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDM 351

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              G+ PD  +Y  L++G+C  G ++ A E+   M   GC  DV +Y  ++NG CK K +
Sbjct: 352 KTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLL 411

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A +L+ EM+ +G+ P   T+ T
Sbjct: 412 ADANALFDEMVERGVVPDFCTFTT 435



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 6/293 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D   +++LI  + +  +++ G      + R  F        SL+ GL     +  A  ++
Sbjct: 114 DNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVY 173

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++   G + +V+T   ++N LC+  H I  +  F       G F      D +TY+T+ 
Sbjct: 174 NEIARSGIELNVYTLNIMVNALCKD-HKIDDVKPFLIDMEQKGIFA-----DIVTYNTLI 227

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +  C+EG + +A E+   M  + + P + TY ++I G C    +  AK +F EM+  G+ 
Sbjct: 228 NAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLS 287

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+  T+N ++ E C+N    EA  +   M+  GV PD   +++L+      G +++A   
Sbjct: 288 PDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMY 347

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           F  M+++G + D   Y ILINGYC+N  +  AL +  +ML +G    VV YNT
Sbjct: 348 FRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNT 400



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 56/107 (52%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K ++ D    L  ++ + GL PD+ TYN+++N FC+ GR+    ++
Sbjct: 568 PDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELI 627

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           L +++     PD  T+T+LI G  ++  + EA     ++   G  PD
Sbjct: 628 LRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 185/329 (56%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + N++   L K   +DT+  ++  + + G  P++ TY  LI+  C+ G     F +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P  V +T LI+GLC ESRI EA ++F  +R  G  P+++TY T+++G C+
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             H   AL L++EM  G+G       P+ +T+  + DGLCK   +  A++  + M    +
Sbjct: 276 IAHVKKALELYQEML-GDGLL-----PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++  Y  LI G+C A + +EA  L  E+    + P+V T+++++  LC   +M+EA  
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G  P+A  YNTL+DG+C  G + +A E+   M   G   ++ ++  LI+GYC
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++E A+ LY+EM+ KG+ P VV Y  
Sbjct: 450 KAGKMEAAMGLYTEMVIKGLLPDVVAYTA 478



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 165/326 (50%), Gaps = 7/326 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M+     P  V  + IL   L          S+F+ + + G+ P+LYTYN +++
Sbjct: 213 FRLFDEMIEKKIFPT-VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK+  V     +   +L     P+ VTF  LI GLC    ++ A      + +FG  P
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++F Y  LI+G C+ G+   AL+L  E+            PD  TYS +  GLC    ++
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHE------ILPDVFTYSILIKGLCGVDRME 385

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  L  +MK +   P+ VTY +LI G+C   +  +A  +  +M ++G++PN++TF+ ++
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK GKM+ A  L   M+  G+ PD   Y  L+DG    G    A  L   M+  G  
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLH 505

Query: 301 RDVFSYGILINGYCKNKEIEGALSLY 326
            +VF+   LI+G CK+  I  A+ L+
Sbjct: 506 PNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 164/329 (49%), Gaps = 14/329 (4%)

Query: 18  CSFNILFGCLAKNKHYD---TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           C    L  CL  ++      +V ++  RL S    P+++   +LI  F +MG V     V
Sbjct: 91  CLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWV 148

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++      P       ++ GL  + R      ++  + A G  P+V TY TLI+G CR
Sbjct: 149 YYKM---DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCR 205

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  LF+EM            P  + Y+ +  GLC E  + +A+ +F  M++  +
Sbjct: 206 QGDFLKAFRLFDEMIEKK------IFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGM 259

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ TY +++ G+C      +A  L+ EM+  G+ PNVVTF ++++ LCK  +M  A +
Sbjct: 260 LPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARK 319

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  M   GV P+  VYN L+DG+C  G ++ A  L   +E +  + DVF+Y ILI G C
Sbjct: 320 FLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLC 379

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               +E A  L  EM  KG  P  VTYNT
Sbjct: 380 GVDRMEEADGLLQEMKKKGFLPNAVTYNT 408



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 116/259 (44%), Gaps = 20/259 (7%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D+ +    +K    +S ++E   +   +  FG +P +F  T+LI+    TG+   A N+F
Sbjct: 630 DSFSLMFALKACTLKSSLVEGKQMHALVINFGFEPIIFLQTSLISMYSATGNVADAHNMF 689

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
           +E+ + N           I+++++          +KA +LF +M+ +++ PD+VT T  +
Sbjct: 690 DEIPSKN----------LISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVAL 739

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
                    +  + +   +  +G+  ++   N ++N   K G++  A R   ++      
Sbjct: 740 SACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRFSLVL------ 793

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS-YGILINGYCKNKEIEGALS 324
           P+   +  ++      G V   K+ F SM+ +  +R   S +G +++  C+   +  A  
Sbjct: 794 PNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEA-- 851

Query: 325 LYSEMLSKGIRPTVVTYNT 343
            Y  +L   +RP  V + T
Sbjct: 852 -YEFILKMPVRPNAVVWRT 869



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 130/288 (45%), Gaps = 28/288 (9%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI----GLFPDLYTYNILI 59
           F  +LR +PS   + SF+++F   A      + L   K+++++    G  P ++    LI
Sbjct: 618 FRILLRKNPSS--IDSFSLMFALKACT--LKSSLVEGKQMHALVINFGFEPIIFLQTSLI 673

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           + +   G V+    +   I     + + +++TS+I       R  +A  LF +++    +
Sbjct: 674 SMYSATGNVADAHNMFDEIP----SKNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQ 729

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD+ T T  ++     G    AL++ E +       G+    D    +++ +   K G +
Sbjct: 730 PDIVTVTVALSACADLG----ALDMGEWIHAYIRHRGL--DTDLCLNNSLINMYSKCGEI 783

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM-DQGVQPNVVTFNV 238
             A+   L +      P+ VT+  ++    +A    E K  F  M  D  ++P +  F  
Sbjct: 784 GTARRFSLVL------PNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGC 837

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +++ LC+ G + EA    E ++++ VRP+A V+ TL+    L G  ++
Sbjct: 838 MVDLLCRAGLLTEA---YEFILKMPVRPNAVVWRTLLGACSLQGMWDK 882


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 187/359 (52%), Gaps = 31/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +++ +   L K +  D   +  +++ + G+ P+ +TYN LI  +   G+      
Sbjct: 251 PPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVR 310

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   + R    PD VTF  L+  LC   +I EA  +F  +   G  PDVF+Y  ++NG  
Sbjct: 311 VFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA 370

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVC------------------------------KPDA 163
             G  +   +LF+ M  G+G   V+C                              KP+ 
Sbjct: 371 TKGCLVDMTDLFDLML-GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNV 429

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY+T+   LC+ G +D A E F +M D+ + PD   Y  LI+GFC      +AK L  E
Sbjct: 430 LTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISE 489

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           +M+ G+  ++V F+ I+N LCK G++ +A  + +L + +G+ P A VY+ LMDG+CL G+
Sbjct: 490 IMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGK 549

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +A  +F +M S G   +   YG L+NGYCK   I+  LSL+ EML KGI+P+ + YN
Sbjct: 550 MEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 608



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 162/313 (51%), Gaps = 10/313 (3%)

Query: 36  VLSLFKRLNSIG-----LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
            ++LF R  S       L P  +TY IL++C  +  R        G++LR+    D +  
Sbjct: 90  AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIA 149

Query: 91  TSLIKGLCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
             L+KG C   R  EA   L  +    GC PDVF+Y+ L+  LC  G +  A +L   MA
Sbjct: 150 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 209

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
            G    G VC PD + Y+T+ DG  KEG V+KA +LF +M    I PD VTY+S++   C
Sbjct: 210 EG----GAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALC 265

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            A   ++A+    +M+++GV PN  T+N ++      G+  EA R+ + M +  + PD  
Sbjct: 266 KARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVV 325

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            +N LM   C  G++  A+++F +M   G   DVFSY I++NGY     +     L+  M
Sbjct: 326 TFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLM 385

Query: 330 LSKGIRPTVVTYN 342
           L  GI P + T+N
Sbjct: 386 LGDGIAPVICTFN 398



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 166/341 (48%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M  M    P V S+NI+    A       +  LF  +   G+ P + T+N+LI  +
Sbjct: 346 VFDTMA-MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAY 404

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +    ++   +      P+ +T+T++I  LC   ++ +A   F ++   G  PD 
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 464

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           + Y  LI G C  G  + A  L  E+ N           D + +S+I + LCK G V  A
Sbjct: 465 YAYHCLIQGFCTHGSLLKAKELISEIMNNGMHL------DIVLFSSIINNLCKLGRVMDA 518

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F    +  ++P  V Y+ L+ G+C      +A  +F  M+  G++PN V +  ++N 
Sbjct: 519 QNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNG 578

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G++DE   L   M+Q G++P   +YN ++DG    GR   AK  F  M  +G   +
Sbjct: 579 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMN 638

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y I++ G  KN+  + A+ L+ E+ +  ++  ++T NT
Sbjct: 639 KCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNT 679



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 160/334 (47%), Gaps = 7/334 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ M R H   P V ++  +   L +    D  +  F ++   G+ PD Y Y+ LI  F
Sbjct: 416 IFNEM-RDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 474

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +     ++  I+ +    D V F+S+I  LC   R+M+A  +F      G  P  
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA 534

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+ L++G C  G    AL +F+ M +   E      P+ + Y T+ +G CK G +D+ 
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE------PNDVVYGTLVNGYCKIGRIDEG 588

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M  + I P  + Y  +I G   A     AK  F EM + G+  N  T+++++  
Sbjct: 589 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 648

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L KN   DEA  L + +  + V+ D    NT++ G   T RV  AK+LF S+  +G +  
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           V +Y I+I    K   +E A  ++S M + G  P
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 742



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 174/376 (46%), Gaps = 50/376 (13%)

Query: 10  MHPSP-----PPVCSFNILFGCL---AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +H +P     P V S++IL   L    K+   D +L +     ++   PD+  YN +I+ 
Sbjct: 170 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPDVVAYNTVIDG 228

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           F K G V+    +   +++    PD VT++S++  LC    + +A A   ++   G  P+
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPN 288

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +TY  LI G   TG    A+ +F+EM   +        PD +T++ +   LCK G + +
Sbjct: 289 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS------ILPDVVTFNMLMGSLCKYGKIKE 342

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV--- 238
           A+++F  M  +  NPDV +Y  ++ G+       +   LF  M+  G+ P + TFNV   
Sbjct: 343 ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIK 402

Query: 239 -------------IMNE-------------------LCKNGKMDEASRLLELMIQIGVRP 266
                        I NE                   LC+ GKMD+A      MI  GV P
Sbjct: 403 AYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAP 462

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y+ L+ GFC  G + +AKEL   + +NG   D+  +  +IN  CK   +  A +++
Sbjct: 463 DKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIF 522

Query: 327 SEMLSKGIRPTVVTYN 342
              ++ G+ PT V Y+
Sbjct: 523 DLTVNVGLHPTAVVYS 538



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 109/213 (51%), Gaps = 5/213 (2%)

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           CR+G  + A+ LF   A+   +   V  P + TY+ + D   +    + A   F ++   
Sbjct: 83  CRSGPAL-AVALFNRAAS-RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRT 140

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDE 251
            +  D++    L++GFC A   +EA  + +    + G  P+V ++++++  LC  GK  +
Sbjct: 141 GLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 200

Query: 252 ASRLLELMIQIGV--RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           A  LL +M + G    PD   YNT++DGF   G VN+A +LF  M   G   D  +Y  +
Sbjct: 201 ADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSV 260

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  CK + ++ A +   +M++KG+ P   TYN
Sbjct: 261 VHALCKARAMDKAEAFLRQMVNKGVLPNNWTYN 293



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 113/254 (44%), Gaps = 7/254 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+     P  V  +  L     K    D  LSLF+ +   G+ P    YNI+I+  
Sbjct: 556 VFDAMVSAGIEPNDVV-YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + GR  P  V    +  S    +  T++ +++GL       EA  LF +LRA   K D+
Sbjct: 615 FEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDI 674

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T  T+I G+ +T     A +LF  ++      G+V  P  +TYS +   L KEG V++A
Sbjct: 675 ITLNTMIAGMFQTRRVEEAKDLFASISRS----GLV--PCVVTYSIMITNLIKEGLVEEA 728

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +++F  M++    PD      ++R     N+   A     ++ ++      +T  ++++ 
Sbjct: 729 EDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDL 788

Query: 243 LCKNGKMDEASRLL 256
               G   E  R L
Sbjct: 789 FSSKGTCREHIRFL 802


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 190/360 (52%), Gaps = 31/360 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++ I+   L K +  D    +F+++   G+ P++ TY  LI+ +  +G+      
Sbjct: 236 PPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVR 295

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      PD  T+  L+  LC + +  EA  LF  +   G KPDV  Y  +++G  
Sbjct: 296 MLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYA 355

Query: 134 RTGHTIVALNLFEEMANGNGE------FGVV------------------------CKPDA 163
             G  +  ++ F ++  GNG       F +V                          P+ 
Sbjct: 356 TKG-ALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNV 414

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           + Y+T+ D LCK G VD A+  F +M +E + P++V +TSL+ G C  + W +A  LF E
Sbjct: 415 VNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFE 474

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M++QG+ PNVV FN IM  LC  G++ +A RL++LM ++G RPD   YN L+ G CL G+
Sbjct: 475 MVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGK 534

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + A +L   M S G   +  +Y  L++GYC++  I+ A S++ EMLS GI P VVTYNT
Sbjct: 535 TDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNT 594



 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 186/351 (52%), Gaps = 15/351 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHY------DTVLSLFKRLNS---IGLFPDLY 53
           +FD  L  H  P  + +FN L   ++           + V+S F R+       + PD++
Sbjct: 37  LFDEFLH-HARPASIIAFNQLLAAVSSASRRGSSSTSELVVSCFNRMIRDCCSKVAPDVF 95

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS-LIKGLCAESRIMEA-AALFT 111
           TY+IL+ CFC+MGR+  GF   G IL++ +  + V   + L+KGLC   R+ EA   L  
Sbjct: 96  TYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEAMGVLLR 155

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
           ++   GC P+V +Y TL+ G C       AL L   MA+G       C P+ ++Y+T+ +
Sbjct: 156 RMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVR---SCPPNLVSYNTVIN 212

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           G   EG VDKA  LFL M D+ I P+VVTYT +I G C A   + A+ +F +M+D+GV+P
Sbjct: 213 GFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRP 272

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N+VT+  +++     G+  E  R+L+ M   G+ PD   Y  L+D  C  G+   A++LF
Sbjct: 273 NIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLF 332

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            SM   G   DV  YGI+++GY     +    S    M+  GI P    +N
Sbjct: 333 DSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFN 383



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 176/340 (51%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R     P V  + I+    A       + S    +   G+ P+ Y +NI+   F
Sbjct: 331 LFDSMIR-KGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAF 389

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K   +     +  ++ +   +P+ V + +LI  LC   R+ +A   F ++   G  P++
Sbjct: 390 AKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNI 449

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             +T+L+ GLC       A  LF EM N          P+ + ++TI   LC EG V KA
Sbjct: 450 VVFTSLVYGLCTIDKWEKAGELFFEMVNQG------IHPNVVFFNTIMCNLCTEGRVMKA 503

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + L   M+     PD+++Y +LIRG C     +EA  L   M+  G++PN  T+N +++ 
Sbjct: 504 QRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHG 563

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C++G++D+A  + + M+  G+ P    YNT++ G   T R + AKEL+++M ++G    
Sbjct: 564 YCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWS 623

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +++Y I++NG  KN  ++ AL ++  + SK ++  ++T+N
Sbjct: 624 IYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFN 663



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 172/332 (51%), Gaps = 6/332 (1%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   ++ +L   L K         LF  +   G+ PD+  Y I+++ +   G +S 
Sbjct: 303 HGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSE 362

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
               L  ++ +  +P+   F  +      ++ I EA  +F K+R  G  P+V  Y TLI+
Sbjct: 363 MHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLID 422

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
            LC+ G    A   F +M N     GV   P+ + ++++  GLC     +KA ELF +M 
Sbjct: 423 ALCKLGRVDDAELKFNQMINE----GVA--PNIVVFTSLVYGLCTIDKWEKAGELFFEMV 476

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           ++ I+P+VV + +++   C      +A+ L   M   G +P+++++N ++   C  GK D
Sbjct: 477 NQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTD 536

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EAS+LL++M+ +G++P+   YNTL+ G+C  GR++ A  +F  M SNG    V +Y  ++
Sbjct: 537 EASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTIL 596

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +G  K +    A  LY  M++ G + ++ TYN
Sbjct: 597 HGLFKTRRFSEAKELYLNMITSGKQWSIYTYN 628



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 166/358 (46%), Gaps = 41/358 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FNI+F   AK       + +F ++   GL P++  Y  LI+  CK+GRV    +   +++
Sbjct: 382 FNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMI 441

Query: 80  RSCFTPDAVTFTSLIKGLCA-----------------------------------ESRIM 104
                P+ V FTSL+ GLC                                    E R+M
Sbjct: 442 NEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVM 501

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           +A  L   +   G +PD+ +Y  LI G C  G T  A  L + M        V  KP+  
Sbjct: 502 KAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIM------LSVGLKPNEC 555

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY+T+  G C++G +D A  +F +M    I P VVTY +++ G      ++EAK L++ M
Sbjct: 556 TYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNM 615

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +  G Q ++ T+N+I+N L KN  +DEA ++ + +    ++ D   +N ++      GR 
Sbjct: 616 ITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRK 675

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             A  LF ++ +NG + DV +Y ++     +   +E    ++SEM   G  P  +  N
Sbjct: 676 EDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLN 733



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 162/330 (49%), Gaps = 13/330 (3%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ M+    +P  V   ++++G    +K ++    LF  + + G+ P++  +N ++   C
Sbjct: 437 FNQMINEGVAPNIVVFTSLVYGLCTIDK-WEKAGELFFEMVNQGIHPNVVFFNTIMCNLC 495

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             GRV     ++  + R    PD +++ +LI+G C   +  EA+ L   + + G KP+  
Sbjct: 496 TEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNEC 555

Query: 124 TYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           TY TL++G CR G    A ++F+EM +NG         P  +TY+TI  GL K     +A
Sbjct: 556 TYNTLLHGYCRDGRIDDAYSVFQEMLSNG-------ITPVVVTYNTILHGLFKTRRFSEA 608

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           KEL+L M        + TY  ++ G    N  +EA  +F  +  + +Q +++TFN+++  
Sbjct: 609 KELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGA 668

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L K+G+ ++A  L   +   G+ PD + Y  + +     G +     +F  ME +GC  +
Sbjct: 669 LLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPN 728

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSK 332
                +++N   +   + G +S     LSK
Sbjct: 729 ----SLMLNFLVRRLLLRGDISRAGAYLSK 754



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 142/309 (45%), Gaps = 6/309 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  FN +   L           L   +  +G  PD+ +YN LI   C +G+      +
Sbjct: 482 PNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKL 541

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     P+  T+ +L+ G C + RI +A ++F ++ + G  P V TY T+++GL +
Sbjct: 542 LDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFK 601

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A  L+  M     ++ +       TY+ I +GL K   VD+A ++F  +  +++
Sbjct: 602 TRRFSEAKELYLNMITSGKQWSIY------TYNIILNGLSKNNCVDEALKMFQSLCSKDL 655

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D++T+  +I          +A  LF  +   G+ P+V T+ +I   L + G ++E   
Sbjct: 656 QVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDG 715

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M + G  P++ + N L+    L G ++RA      ++      +  +  +LI+ + 
Sbjct: 716 MFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLFS 775

Query: 315 KNKEIEGAL 323
           + +    +L
Sbjct: 776 REEHQAKSL 784


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 178/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    D    L K ++S G+ P+L +YN++IN  C+ G +   + +
Sbjct: 247 PNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEI 306

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +    FTPD VT+ +L+ G C E    +A  +  ++   G  P V TYT LIN +C+
Sbjct: 307 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 366

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A+  F++M           +P+  TY+T+ DG  ++G +++A  +  +M +   
Sbjct: 367 ARNLNRAMEFFDQMRIRG------LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF 420

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P VVTY + I G C      EA  +  EM+++G+ P+VV+++ I++  C+ G++D A +
Sbjct: 421 SPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQ 480

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M++ GV PDA  Y++L+ G C   R+  A +L   M   G   D F+Y  LIN YC
Sbjct: 481 MKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYC 540

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              ++  AL L+ EM+ KG  P  VTY+
Sbjct: 541 VEGDLNKALHLHDEMIHKGFLPDAVTYS 568



 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 177/331 (53%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLS--LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P V S+N +   + +++    + +  +++ +    + P++YTYNILI  FC +G +  G 
Sbjct: 175 PGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGL 234

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
              G + R+   P+ VT+ +LI   C   RI EA  L   + + G +P++ +Y  +INGL
Sbjct: 235 GCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGL 294

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           CR G    A  + EEM    G  G    PD +TY+T+ +G CKEG   +A  +  +M   
Sbjct: 295 CREGSMKEAWEILEEM----GYKGFT--PDEVTYNTLLNGYCKEGNFHQALVIHAEMVRN 348

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            ++P VVTYT+LI   C A + N A   F +M  +G++PN  T+  +++   + G ++EA
Sbjct: 349 GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEA 408

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            R+L  M + G  P    YN  + G C+  R+  A  +   M   G   DV SY  +I+G
Sbjct: 409 YRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISG 468

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +C+  E++ A  +  EM+ KG+ P  VTY++
Sbjct: 469 FCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 499



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 176/341 (51%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++  M+R   SP  V ++NIL             L  F  +   G  P++ TYN LI+ +
Sbjct: 201 VYREMIRSRVSPN-VYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAY 259

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CKMGR+   F +L  +      P+ +++  +I GLC E  + EA  +  ++   G  PD 
Sbjct: 260 CKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDE 319

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY TL+NG C+ G+   AL +  EM   NG       P  +TY+ + + +CK   +++A
Sbjct: 320 VTYNTLLNGYCKEGNFHQALVIHAEMVR-NG-----VSPSVVTYTALINSMCKARNLNRA 373

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E F +M+   + P+  TYT+LI GF      NEA  +  EM + G  P+VVT+N  ++ 
Sbjct: 374 MEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHG 433

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C   +M+EA  +++ M++ G+ PD   Y+T++ GFC  G ++RA ++   M   G   D
Sbjct: 434 HCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPD 493

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y  LI G C+ + +  A  L  EML  G+ P   TY T
Sbjct: 494 AVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTT 534



 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 175/341 (51%), Gaps = 21/341 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   + K ++ +  +  F ++   GL P+  TY  LI+ F + G ++  + +
Sbjct: 352 PSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRI 411

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  S F+P  VT+ + I G C   R+ EA  +  ++   G  PDV +Y+T+I+G CR
Sbjct: 412 LNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCR 471

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + +EM     E GV   PDA+TYS++  GLC+   + +A +L  +M D  +
Sbjct: 472 KGELDRAFQMKQEMV----EKGV--SPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGL 525

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TYT+LI  +C   D N+A  L  EM+ +G  P+ VT++V++N L K  +  EA R
Sbjct: 526 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKR 585

Query: 255 LLELMIQIGVRPDASVYNTLMD---------------GFCLTGRVNRAKELFVSMESNGC 299
           LL  +I     P    Y+TL++               GFC+ G ++ A  +F SM     
Sbjct: 586 LLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNH 645

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
                 Y ++I+G+C+   +  A +LY EM+  G  P  VT
Sbjct: 646 KPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVT 686



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 172/329 (52%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N++   L +         + + +   G  PD  TYN L+N +CK G      V+
Sbjct: 282 PNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVI 341

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R+  +P  VT+T+LI  +C    +  A   F ++R  G +P+  TYTTLI+G  R
Sbjct: 342 HAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 401

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +  EM     E G    P  +TY+    G C    +++A  +  +M ++ +
Sbjct: 402 QGLLNEAYRILNEMT----ESGF--SPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 455

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV+Y+++I GFC   + + A  +  EM+++GV P+ VT++ ++  LC+  ++ EA  
Sbjct: 456 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 515

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+ +G+ PD   Y TL++ +C+ G +N+A  L   M   G + D  +Y +LING  
Sbjct: 516 LSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLN 575

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K      A  L  +++ +   P+ VTY+T
Sbjct: 576 KQARTREAKRLLFKLIYEESVPSDVTYDT 604



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 172/330 (52%), Gaps = 16/330 (4%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG--- 76
           F+++    +     D  ++      S G  P + +YN +++   +    S G V L    
Sbjct: 145 FDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVR----SRGSVKLSAEE 200

Query: 77  ---RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
               ++RS  +P+  T+  LI+G C+   + +    F ++   GC P+V TY TLI+  C
Sbjct: 201 VYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYC 260

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A  L + M++         +P+ I+Y+ I +GLC+EG + +A E+  +M  + 
Sbjct: 261 KMGRIDEAFGLLKSMSSKG------MQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG 314

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD VTY +L+ G+C   ++++A  +  EM+  GV P+VVT+  ++N +CK   ++ A 
Sbjct: 315 FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAM 374

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
              + M   G+RP+   Y TL+DGF   G +N A  +   M  +G    V +Y   I+G+
Sbjct: 375 EFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGH 434

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C  + +E AL +  EM+ KG+ P VV+Y+T
Sbjct: 435 CVLERMEEALGVVQEMVEKGLAPDVVSYST 464



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 160/337 (47%), Gaps = 21/337 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N         +  +  L + + +   GL PD+ +Y+ +I+ FC+ G +   F +
Sbjct: 422 PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQM 481

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++    +PDAVT++SLI+GLC   R+ EA  L  ++   G  PD FTYTTLIN  C 
Sbjct: 482 KQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCV 541

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL+L +EM +     G +  PDA+TYS + +GL K+    +AK L  K+  E  
Sbjct: 542 EGDLNKALHLHDEMIHK----GFL--PDAVTYSVLINGLNKQARTREAKRLLFKLIYEES 595

Query: 195 NPDVVTY---------------TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            P  VTY                +LI+GFC     +EA  +F  M+++  +P    +NVI
Sbjct: 596 VPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVI 655

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+ G + +A  L + MI  G  P      TL+      G      E+      +  
Sbjct: 656 IHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCR 715

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           + +     +L+    K   +E  L++ ++M   G+ P
Sbjct: 716 LNEAELAKVLVEINHKEGNMEAVLNVLTDMAKDGLLP 752



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 21/187 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++  L          +  L L   +   G  PD  TY++LIN   K  R      
Sbjct: 526 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKR 585

Query: 74  VLGRILRSCFTPDAVTF---------------TSLIKGLCAESRIMEAAALFTKLRAFGC 118
           +L +++     P  VT+                +LIKG C +  + EA  +F  +     
Sbjct: 586 LLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNH 645

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           KP    Y  +I+G CR G+   A NL++EM +     G V  P  +T  T+   L KEG 
Sbjct: 646 KPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHS----GFV--PHTVTVITLIKALFKEGM 699

Query: 179 VDKAKEL 185
            ++  E+
Sbjct: 700 NEEMSEV 706


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 205/375 (54%), Gaps = 42/375 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F +M++  P  P +  F+ L   ++K K YD V+ L++++  +G+  +L T NIL+NCF
Sbjct: 68  LFFHMVQCRP-LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCF 126

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S     LG++++    PD VTF SL+ G C   RI +A  +F ++   G +P+V
Sbjct: 127 CRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNV 186

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC-------- 174
             Y T+I+GLC++     AL+L   M           +PDA+TY+++  GLC        
Sbjct: 187 VIYNTIIDGLCKSKQVDNALDLLNRMEVDG------IRPDAVTYNSLISGLCNSGRWDDA 240

Query: 175 ---------------------------KEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
                                      KEG + +A+EL+ +M   +++PD+VTY+ LI G
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYG 300

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C  +  +EA+ +F  M+ +G  P+VVT+++++N  CK+ K++   +L   M Q GV  +
Sbjct: 301 LCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y  L+ G+C  G++N A+E+F  M   G   ++ +Y +L++G C N +IE AL + +
Sbjct: 361 TVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILA 420

Query: 328 EMLSKGIRPTVVTYN 342
           +M   G+   +VTYN
Sbjct: 421 DMQKSGMDADIVTYN 435



 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 175/337 (51%), Gaps = 7/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+++   P  V   ++L G    ++ YD  L +F R+  +G  P++  YN +I+  CK  
Sbjct: 142 MMKLGHEPDIVTFGSLLNGFCRGDRIYDA-LYMFDRMVEMGYEPNVVIYNTIIDGLCKSK 200

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +V     +L R+      PDAVT+ SLI GLC   R  +A  + + +      PDVFT+ 
Sbjct: 201 QVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFN 260

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI+   + G    A  L+EEM   + +      PD +TYS +  GLC    +D+A+++F
Sbjct: 261 ALIDACVKEGRISEAEELYEEMIRRSLD------PDIVTYSLLIYGLCMYSRLDEAEQMF 314

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M  +   PDVVTY+ LI G+C +        LF EM  +GV  N VT+ V++   C+ 
Sbjct: 315 GFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRA 374

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           GK++ A  + + M+  GV P+   YN L+ G C  G++ +A  +   M+ +G   D+ +Y
Sbjct: 375 GKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTY 434

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            I+I G CK  E+  A  LY  +  KG+ P + TY  
Sbjct: 435 NIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTA 471



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 170/334 (50%), Gaps = 7/334 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+ M    P V  +N +   L K+K  D  L L  R+   G+ PD  TYN LI+  
Sbjct: 173 MFDRMVEM-GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGL 231

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GR      ++  + +    PD  TF +LI     E RI EA  L+ ++      PD+
Sbjct: 232 CNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDI 291

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY+ LI GLC       A  +F  M +        C PD +TYS + +G CK   V+  
Sbjct: 292 VTYSLLIYGLCMYSRLDEAEQMFGFMVSKG------CFPDVVTYSILINGYCKSKKVEHG 345

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF +M    +  + VTYT LI+G+C A   N A+ +F  M+  GV PN++T+NV+++ 
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHG 405

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC NGK+++A  +L  M + G+  D   YN ++ G C  G V  A +L+ S+   G   D
Sbjct: 406 LCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPD 465

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           +++Y  ++ G  K      A +L+ +M   GI P
Sbjct: 466 IWTYTAMMLGLYKKGLRGEADALFRKMKEDGILP 499



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 135/282 (47%), Gaps = 29/282 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L  +  +D    +   +    ++PD++T+N LI+   K GR+S    +
Sbjct: 219 PDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEEL 278

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    PD VT++ LI GLC  SR+ EA  +F  + + GC PDV TY+ LING C+
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCK 338

Query: 135 TGHTIVALNLFEEMANGN------------------GEFGVV-----------CKPDAIT 165
           +      + LF EM+                     G+  V              P+ IT
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIIT 398

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  GLC  G ++KA  +   M+   ++ D+VTY  +IRG C A +  +A  L+  + 
Sbjct: 399 YNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLN 458

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            +G+ P++ T+  +M  L K G   EA  L   M + G+ P+
Sbjct: 459 LKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D + +LF  M      P +  ++ L+        ++    L+ +M   G+  N+ T N+
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C+  ++  A   L  M+++G  PD   + +L++GFC   R+  A  +F  M   G
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMG 181

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +V  Y  +I+G CK+K+++ AL L + M   GIRP  VTYN+
Sbjct: 182 YEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNS 226



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  ++R        +++  LF  M+     P++  F+ +++ + K  K D    L E M 
Sbjct: 49  YREMLRNGIRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQ 108

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
            +G+  +    N L++ FC   +++ A      M   G   D+ ++G L+NG+C+   I 
Sbjct: 109 MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIY 168

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            AL ++  M+  G  P VV YNT
Sbjct: 169 DALYMFDRMVEMGYEPNVVIYNT 191



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + ++N+L   L  N   +  L +   +   G+  D+ TYNI+I   CK G V+  + 
Sbjct: 393 PPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWD 452

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +   +     TPD  T+T+++ GL  +    EA ALF K++  G  P+
Sbjct: 453 LYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/326 (37%), Positives = 166/326 (50%), Gaps = 8/326 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++  L   L K K  +  L    ++ S G  PD+YTY  +I+  C   R+      L  +
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                TP+ VT+T LI GLC   R+ EA AL +K+R   C P   TY +LI+GLC+    
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERA 131

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A +L EEM          C PD  TY+T+  G CK    D A  +F ++      PDV
Sbjct: 132 SEAYDLLEEMVYSG------CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           VTY+ LI G C      EA  LF  M+  G   PN VT+N +++  C+ GKMDEA  LLE
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLE 245

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M + G  PD   Y TLM+GFC   R++ A +L   M   G   DV ++  L++G C+  
Sbjct: 246 RMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCREN 305

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  A+ +  EM  K   PTV TYNT
Sbjct: 306 RLSDAVHILGEMRRKSCSPTVYTYNT 331



 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 177/330 (53%), Gaps = 12/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L             + + +  L P++ TY +LI+  CK GRV     +
Sbjct: 44  PDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVAL 103

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ + C  P AVT+ SLI GLC   R  EA  L  ++   GC PD+FTYTTLI G C+
Sbjct: 104 LSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK 162

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDE 192
           +  +  AL +FE++ A G        +PD +TYS + DGLCKEG + +A +LF +M K  
Sbjct: 163 SKKSDDALRVFEQLVARG-------FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           +  P+ VTY SLI GFC     +EA  L   M + G  P+VVT+  +MN  CK  ++D+A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             LL  M + G+ PD   + +LMDG C   R++ A  +   M    C   V++Y  +++G
Sbjct: 276 YDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 335

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           YC+  ++E A     E +     P VV++N
Sbjct: 336 YCRANQLEEARKFMLEEMD--CPPNVVSFN 363



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 165/294 (56%), Gaps = 8/294 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D  TY  LI   CK+ R+    + LG+++   F PD  T+T++I  LC E+R+ EA    
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++      P+V TYT LI+GLC+ G    A+ L  +M          C P A+TY+++ 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-------CVPTAVTYNSLI 122

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
            GLCK     +A +L  +M      PD+ TYT+LI GFC +   ++A  +F +++ +G +
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIG-VRPDASVYNTLMDGFCLTGRVNRAKE 289
           P+VVT++ +++ LCK G++ EA  L   MI+ G   P+   YN+L+ GFC  G+++ A  
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L   M   G   DV +Y  L+NG+CK   ++ A  L ++M  KG+ P VVT+ +
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTS 296



 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 173/329 (52%), Gaps = 8/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   L K    D  ++L  ++      P   TYN LI+  CK  R S  + +
Sbjct: 79  PNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERASEAYDL 137

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ S   PD  T+T+LI G C   +  +A  +F +L A G +PDV TY+ LI+GLC+
Sbjct: 138 LEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCK 197

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A++LF  M          C P+ +TY+++  G C+ G +D+A  L  +M +   
Sbjct: 198 EGRLKEAIDLFGRMIKSGS-----CMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS 252

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDVVTYT+L+ GFC     ++A  L  +M  +G+ P+VVTF  +M+ LC+  ++ +A  
Sbjct: 253 SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  M +    P    YNT++DG+C   ++  A++    +E   C  +V S+ I+I G C
Sbjct: 313 ILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLC 370

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K      A+ L  E   +   P VV Y T
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTT 399



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 173/321 (53%), Gaps = 14/321 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V +++ L   L K       + LF R+  S    P+  TYN LI+ FC+MG++     
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R+  +  +PD VT+T+L+ G C  +R+ +A  L  ++   G  PDV T+T+L++GLC
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R      A+++  EM   +      C P   TY+TI DG C+   +++A++  L+  D  
Sbjct: 303 RENRLSDAVHILGEMRRKS------CSPTVYTYNTILDGYCRANQLEEARKFMLEEMD-- 354

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+VV++  +IRG C  N  +EA  L  E   +   P+VV +  +++ LC+  K+DEA 
Sbjct: 355 CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEAC 414

Query: 254 RLLELMI-QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           R+   M+ + G  P++  Y+TL+ G C  G ++RA+         GC+ ++ +Y +LI+ 
Sbjct: 415 RVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYI----EKGCVPNIGTYNLLIDA 470

Query: 313 YCKNKEIEGALSLYSEMLSKG 333
           + K    E A  L  +M+ +G
Sbjct: 471 FRKANRDEDARELLDDMVQRG 491



 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 15/298 (5%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++     P   ++N L     +    D  ++L +R+   G  PD+ TY  L+N F
Sbjct: 207 LFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGF 266

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+ R+   + +L ++ R   TPD VTFTSL+ GLC E+R+ +A  +  ++R   C P V
Sbjct: 267 CKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV 326

Query: 123 FTYTTLINGLCRTGHTIVALN-LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           +TY T+++G CR      A   + EEM          C P+ ++++ +  GLCK     +
Sbjct: 327 YTYNTILDGYCRANQLEEARKFMLEEMD---------CPPNVVSFNIMIRGLCKVNRSSE 377

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIM 240
           A EL  + +    NPDVV YT++I G C     +EA  ++ +M+++ G  PN +T++ ++
Sbjct: 378 AMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLV 437

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
             LC  G +D A   +E     G  P+   YN L+D F    R   A+EL   M   G
Sbjct: 438 TGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 128/263 (48%), Gaps = 43/263 (16%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVAL---------------------------------- 142
            C  D  TYT+LI GLC+      AL                                  
Sbjct: 6   SCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 143 -NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
               EEMAN N        P+ +TY+ + DGLCK G VD+A  L  KM+ + + P  VTY
Sbjct: 66  RKFLEEMANRN------LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTY 118

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            SLI G C A   +EA  L  EM+  G  P++ T+  ++   CK+ K D+A R+ E ++ 
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA 178

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIE 320
            G RPD   Y+ L+DG C  GR+  A +LF  M +S  CM +  +Y  LI+G+C+  +++
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 238

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A++L   M   G  P VVTY T
Sbjct: 239 EAMNLLERMAETGSSPDVVTYTT 261



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +N C  D  +Y  LI G CK K +E AL    +M+SKG  P V TY
Sbjct: 4   TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTY 49


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 187/393 (47%), Gaps = 70/393 (17%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L K    + V  L + +   G  PD ++YN ++ C C+ G+      +
Sbjct: 195 PDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKI 254

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++     PD VT+ SL+ G C  S++ EA  L   +    C P V TYTTLI G  R
Sbjct: 255 LEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSR 314

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  + E+M      F     PD +TY+ + DGLCK G +++A EL   M +++ 
Sbjct: 315 ADRLADAYRVMEDM------FKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDC 368

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY+ L+ G C     ++A+ L   M+++G QPN+VTFN +++  CK GK+DE  +
Sbjct: 369 APDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHK 428

Query: 255 LLELMIQI-----------------------------GVRPDASVYNTLMDGFCLTGRVN 285
           +LELM ++                             G+ PD + Y+++++G C TG+V 
Sbjct: 429 VLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVE 488

Query: 286 RAKE-----------------------------------LFVSMESNGCMRDVFSYGILI 310
            A+E                                   +   M   GC  ++++Y ILI
Sbjct: 489 EAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILI 548

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           NG CK K +E A+++   ML KG  P V TY +
Sbjct: 549 NGLCKTKRVEDAINVLDVMLEKGCVPDVATYTS 581



 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ IL   L + +  D    L   +      PD   YN LI   CKMG++     V
Sbjct: 90  PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNV 149

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD +T+TSLI G C  + + EA  L  K++  G  PD   Y  L+NGLC+
Sbjct: 150 LKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCK 209

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                    L EEM     E      PD  +Y+T+   LC+ G  ++A ++  KM ++  
Sbjct: 210 QNQLEEVSKLLEEMVEAGRE------PDTFSYNTVVACLCESGKYEEAGKILEKMIEKKC 263

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY SL+ GFC  +  +EA+ L  +M+ +   P V+T+  ++    +  ++ +A R
Sbjct: 264 GPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYR 323

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           ++E M + G+ PD   YN L+DG C  G++  A EL   M    C  DV +Y IL+NG C
Sbjct: 324 VMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLC 383

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  +++ A  L   ML +G +P +VT+NT
Sbjct: 384 KLGKVDDARLLLEMMLERGCQPNLVTFNT 412



 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 175/327 (53%), Gaps = 12/327 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K    +    L + +      PD+ TY+IL+N  CK+G+V    ++
Sbjct: 335 PDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLL 394

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     P+ VTF ++I G C   ++ E   +   ++   C PDV TY+TLI+G C+
Sbjct: 395 LEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCK 454

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                        M +     G+   PD  +YS++ +GLC  G V++A+E+   M  +  
Sbjct: 455 ANR----------MQDAFAILGI--SPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGC 502

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P    Y  +I G C     +EA  +   M ++G +PN+ T+++++N LCK  ++++A  
Sbjct: 503 PPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAIN 562

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L++M++ G  PD + Y +L+DGFC   +++ A + F +M  +GC  D  +Y ILI+G+C
Sbjct: 563 VLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFC 622

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           ++  +E A+ +   ML KG  P   TY
Sbjct: 623 QSGNVEKAIEVMQLMLEKGCNPDAATY 649



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 170/332 (51%), Gaps = 10/332 (3%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           PS P   ++  L    ++  +   VL +   + +    PD+ T+N ++  +C++G +   
Sbjct: 19  PSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRA 78

Query: 72  FVVL-GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
                G++  S   P A T+  LI GLC   RI EA  L  ++    C PD   Y  LI 
Sbjct: 79  LSHFRGKMWCS---PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIA 135

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLC+ G    A N+ + M   +      C PD ITY+++  G C+   +D+A++L  KMK
Sbjct: 136 GLCKMGKIDAARNVLKMMLERS------CVPDVITYTSLIVGCCQTNALDEARKLMEKMK 189

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           +  + PD V Y +L+ G C  N   E   L  EM++ G +P+  ++N ++  LC++GK +
Sbjct: 190 ESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYE 249

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA ++LE MI+    PD   YN+LMDGFC   +++ A+ L   M    C   V +Y  LI
Sbjct: 250 EAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLI 309

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G+ +   +  A  +  +M   GI P +VTYN
Sbjct: 310 GGFSRADRLADAYRVMEDMFKAGISPDLVTYN 341



 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 174/341 (51%), Gaps = 13/341 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +   ML     P  +   +++ GC   N   D    L +++   GL PD   YN L+N  
Sbjct: 149 VLKMMLERSCVPDVITYTSLIVGCCQTNA-LDEARKLMEKMKESGLTPDTVAYNALLNGL 207

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  ++     +L  ++ +   PD  ++ +++  LC   +  EA  +  K+    C PDV
Sbjct: 208 CKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDV 267

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY +L++G C+      A  L E+M       G  C P  ITY+T+  G  +   +  A
Sbjct: 268 VTYNSLMDGFCKVSKMDEAERLLEDM------VGRRCAPTVITYTTLIGGFSRADRLADA 321

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +   M    I+PD+VTY  L+ G C A    EA  L   M+++   P+VVT+++++N 
Sbjct: 322 YRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNG 381

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK GK+D+A  LLE+M++ G +P+   +NT++DGFC  G+V+   ++   M+   C  D
Sbjct: 382 LCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPD 441

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +Y  LI+GYCK   ++ A ++       GI P   +Y++
Sbjct: 442 VVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSS 476



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 158/306 (51%), Gaps = 8/306 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           S F+   S    P   TY  LI  F + G       +   +L   F+PD +T  +++K  
Sbjct: 10  SFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAY 69

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C    +  A + F       C P  FTY  LI+GLC+      A  L +EM   +     
Sbjct: 70  CQIGDLDRALSHFRG--KMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKD----- 122

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
            C PDA  Y+ +  GLCK G +D A+ +   M + +  PDV+TYTSLI G C  N  +EA
Sbjct: 123 -CHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEA 181

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           + L  +M + G+ P+ V +N ++N LCK  +++E S+LLE M++ G  PD   YNT++  
Sbjct: 182 RKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVAC 241

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C +G+   A ++   M    C  DV +Y  L++G+CK  +++ A  L  +M+ +   PT
Sbjct: 242 LCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPT 301

Query: 338 VVTYNT 343
           V+TY T
Sbjct: 302 VITYTT 307



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 173/357 (48%), Gaps = 35/357 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    D    L + +      P + TY  LI  F +  R++  + V
Sbjct: 265 PDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRV 324

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + ++  +PD VT+  L+ GLC   ++ EA  L   +    C PDV TY+ L+NGLC+
Sbjct: 325 MEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCK 384

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L E M     E G  C+P+ +T++T+ DG CK G VD+  ++   MK+ + 
Sbjct: 385 LGKVDDARLLLEMML----ERG--CQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSC 438

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLF-------------------------IEMMD--- 226
            PDVVTY++LI G+C AN   +A  +                           E+MD   
Sbjct: 439 TPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMT 498

Query: 227 -QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            QG  P    + +I+  LC   + DEA ++L++M + G  P+   Y+ L++G C T RV 
Sbjct: 499 KQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVE 558

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A  +   M   GC+ DV +Y  LI+G+CK  +++ A   +  M   G  P  + YN
Sbjct: 559 DAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYN 615



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 140/261 (53%), Gaps = 12/261 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN +     K    D    + + +  +   PD+ TY+ LI+ +CK  R+   F +
Sbjct: 405 PNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAI 464

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG       +PD  +++S+++GLC+  ++ EA  +   +   GC P    Y  +I GLC 
Sbjct: 465 LG------ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCD 518

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL + + M+    E G  C+P+  TYS + +GLCK   V+ A  +   M ++  
Sbjct: 519 VERGDEALKMLQVMS----ERG--CEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGC 572

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TYTSLI GFC  N  + A   F  M D G +P+ + +N++++  C++G +++A  
Sbjct: 573 VPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIE 632

Query: 255 LLELMIQIGVRPDASVYNTLM 275
           +++LM++ G  PDA+ Y +LM
Sbjct: 633 VMQLMLEKGCNPDAATYFSLM 653



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 7/174 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M +    PP    + ++ G L   +  D  L + + ++  G  P+LYTY+ILIN  
Sbjct: 493 VMDLMTK-QGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGL 551

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  RV     VL  +L     PD  T+TSLI G C  +++  A   F  +R  GC+PD 
Sbjct: 552 CKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDK 611

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
             Y  LI+G C++G+   A+ + + M          C PDA TY ++   L  E
Sbjct: 612 LAYNILISGFCQSGNVEKAIEVMQLMLEKG------CNPDAATYFSLMRSLTTE 659



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           E    F E      +P+  T+  ++    + G       +   M+     PD   +NT++
Sbjct: 7   EGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTIL 66

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
             +C  G ++RA   F       C    F+Y ILI+G C+ + I+ A  L  EM+ K   
Sbjct: 67  KAYCQIGDLDRALSHFRG--KMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCH 124

Query: 336 PTVVTYN 342
           P    YN
Sbjct: 125 PDAAVYN 131


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/326 (37%), Positives = 166/326 (50%), Gaps = 8/326 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++  L   L K K  +  L    ++ S G  PD+YTY  +I+  C   R+      L  +
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                TP+ VT+T LI GLC   R+ EA AL +K+R   C P   TY +LI+GLC+    
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERA 131

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A +L EEM          C PD  TY+T+  G CK    D A  +F ++      PDV
Sbjct: 132 SEAYDLLEEMVYSG------CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           VTY+ LI G C      EA  LF  M+  G   PN VT+N +++  C+ GKMDEA  LLE
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLE 245

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M + G  PD   Y TLM+GFC   R++ A +L   M   G   DV ++  L++G C+  
Sbjct: 246 RMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCREN 305

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  A+ +  EM  K   PTV TYNT
Sbjct: 306 RLSDAVHILGEMRRKSCSPTVYTYNT 331



 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 177/330 (53%), Gaps = 12/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L             + + +  L P++ TY +LI+  CK GRV     +
Sbjct: 44  PDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVAL 103

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ + C  P AVT+ SLI GLC   R  EA  L  ++   GC PD+FTYTTLI G C+
Sbjct: 104 LSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK 162

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDE 192
           +  +  AL +FE++ A G        +PD +TYS + DGLCKEG + +A +LF +M K  
Sbjct: 163 SKKSDDALRVFEQLVARG-------FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           +  P+ VTY SLI GFC     +EA  L   M + G  P+VVT+  +MN  CK  ++D+A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             LL  M + G+ PD   + +LMDG C   R++ A  +   M    C   V++Y  +++G
Sbjct: 276 YDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 335

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           YC+  ++E A     E +     P VV++N
Sbjct: 336 YCRANQLEEARKFMLEEMD--CPPNVVSFN 363



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 165/294 (56%), Gaps = 8/294 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D  TY  LI   CK+ R+    + LG+++   F PD  T+T++I  LC E+R+ EA    
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++      P+V TYT LI+GLC+ G    A+ L  +M          C P A+TY+++ 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-------CVPTAVTYNSLI 122

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
            GLCK     +A +L  +M      PD+ TYT+LI GFC +   ++A  +F +++ +G +
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIG-VRPDASVYNTLMDGFCLTGRVNRAKE 289
           P+VVT++ +++ LCK G++ EA  L   MI+ G   P+   YN+L+ GFC  G+++ A  
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L   M   G   DV +Y  L+NG+CK   ++ A  L ++M  KG+ P VVT+ +
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTS 296



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 173/329 (52%), Gaps = 8/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   L K    D  ++L  ++      P   TYN LI+  CK  R S  + +
Sbjct: 79  PNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERASEAYDL 137

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ S   PD  T+T+LI G C   +  +A  +F +L A G +PDV TY+ LI+GLC+
Sbjct: 138 LEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCK 197

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A++LF  M          C P+ +TY+++  G C+ G +D+A  L  +M +   
Sbjct: 198 EGRLKEAIDLFGRMIKSGS-----CMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGS 252

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDVVTYT+L+ GFC     ++A  L  +M  +G+ P+VVTF  +M+ LC+  ++ +A  
Sbjct: 253 SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVH 312

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  M +    P    YNT++DG+C   ++  A++    +E   C  +V S+ I+I G C
Sbjct: 313 ILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLC 370

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K      A+ L  E   +   P VV Y T
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTT 399



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 173/321 (53%), Gaps = 14/321 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V +++ L   L K       + LF R+  S    P+  TYN LI+ FC+MG++     
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R+  +  +PD VT+T+L+ G C  +R+ +A  L  ++   G  PDV T+T+L++GLC
Sbjct: 243 LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLC 302

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R      A+++  EM   +      C P   TY+TI DG C+   +++A++  L+  D  
Sbjct: 303 RENRLSDAVHILGEMRRKS------CSPTVYTYNTILDGYCRANQLEEARKFMLEEMD-- 354

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+VV++  +IRG C  N  +EA  L  E   +   P+VV +  +++ LC+  K+DEA 
Sbjct: 355 CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEAC 414

Query: 254 RLLELMI-QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           R+   M+ + G  P++  Y+TL+ G C  G ++RA+         GC+ ++ +Y +LI+ 
Sbjct: 415 RVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYI----EKGCVPNIGTYNLLIDA 470

Query: 313 YCKNKEIEGALSLYSEMLSKG 333
           + K    E A  L  +M+ +G
Sbjct: 471 FRKANRDEDARELLDDMVQRG 491



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 15/298 (5%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++     P   ++N L     +    D  ++L +R+   G  PD+ TY  L+N F
Sbjct: 207 LFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGF 266

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+ R+   + +L ++ R   TPD VTFTSL+ GLC E+R+ +A  +  ++R   C P V
Sbjct: 267 CKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV 326

Query: 123 FTYTTLINGLCRTGHTIVALN-LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           +TY T+++G CR      A   + EEM          C P+ ++++ +  GLCK     +
Sbjct: 327 YTYNTILDGYCRANQLEEARKFMLEEMD---------CPPNVVSFNIMIRGLCKVNRSSE 377

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIM 240
           A EL  + +    NPDVV YT++I G C     +EA  ++ +M+++ G  PN +T++ ++
Sbjct: 378 AMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLI 437

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
             LC  G +D A   +E     G  P+   YN L+D F    R   A+EL   M   G
Sbjct: 438 TGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/262 (34%), Positives = 128/262 (48%), Gaps = 43/262 (16%)

Query: 118 CKPDVFTYTTLINGLCRTGHTIVAL----------------------------------- 142
           C  D  TYT+LI GLC+      AL                                   
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
              EEMAN N        P+ +TY+ + DGLCK G VD+A  L  KM+ + + P  VTY 
Sbjct: 67  KFLEEMANRN------LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYN 119

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           SLI G C A   +EA  L  EM+  G  P++ T+  ++   CK+ K D+A R+ E ++  
Sbjct: 120 SLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR 179

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEG 321
           G RPD   Y+ L+DG C  GR+  A +LF  M +S  CM +  +Y  LI+G+C+  +++ 
Sbjct: 180 GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDE 239

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A++L   M   G  P VVTY T
Sbjct: 240 AMNLLERMAETGSSPDVVTYTT 261



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +N C  D  +Y  LI G CK K +E AL    +M+SKG  P V TY
Sbjct: 4   TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTY 49


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 184/329 (55%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + N++   L K   +DT+  ++  + + G  P++ TY  LI+  C+ G     F +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P  V +T LI+GLC ESRI EA ++F  +R  G  P+++TY T+++G C+
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             H   AL L+ EM  G+G       P+ +T+  + DGLCK   +  A++  + M    +
Sbjct: 276 IAHVKKALELYXEML-GDGLL-----PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++  Y  LI G+C A + +EA  L  E+    + P+V T+++++  LC   +M+EA  
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G  P+A  YNTL+DG+C  G + +A E+   M   G   ++ ++  LI+GYC
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++E A+ LY+EM+ KG+ P VV Y  
Sbjct: 450 KAGKMEAAMGLYTEMVIKGLLPDVVAYTA 478



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 188/382 (49%), Gaps = 43/382 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M+     P  V  + IL   L          S+F+ + + G+ P+LYTYN +++
Sbjct: 213 FRLFDEMIEKKIFPT-VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK+  V     +   +L     P+ VTF  LI GLC    ++ A      + +FG  P
Sbjct: 272 GYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEE-------------------------MANGNGEF 155
           ++F Y  LI+G C+ G+   AL+L  E                         M   +G  
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391

Query: 156 GVVCK----PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
             + K    P+A+TY+T+ DG CKEG ++KA E+  +M ++ I P+++T+++LI G+C A
Sbjct: 392 QEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKA 451

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                A  L+ EM+ +G+ P+VV +  +++   K+G   EA RL + M + G+ P+    
Sbjct: 452 GKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL 511

Query: 272 NTLMDGFCLTGRVNRAKELFVS-------------MESNGCMRDVFSYGILINGYCKNKE 318
           + L+DG C  GR++ A +LF++             ++ + C  +   Y  LI G C +  
Sbjct: 512 SCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGR 571

Query: 319 IEGALSLYSEMLSKGIRPTVVT 340
           I  A   +S+M   G+RP V T
Sbjct: 572 IFKASKFFSDMRCSGLRPDVFT 593



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 175/342 (51%), Gaps = 23/342 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F IL   L K     +       + S G+ P+++ YN LI+ +CK G +S    +
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I +    PD  T++ LIKGLC   R+ EA  L  +++  G  P+  TY TLI+G C+
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+ +  +M     E G+  +P+ IT+ST+ DG CK G ++ A  L+ +M  + +
Sbjct: 416 EGNMEKAIEVCSQMT----EKGI--EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV YT+LI G     +  EA  L  EM + G+ PNV T + +++ LCK+G++ +A +
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK 529

Query: 255 LLELMIQIGV---------------RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           L   + + G                 P+  +Y  L+ G C  GR+ +A + F  M  +G 
Sbjct: 530 LF--LAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGL 587

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             DVF+  ++I G+ +   +   + L +++L  GI P    Y
Sbjct: 588 RPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVY 629



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 165/329 (50%), Gaps = 14/329 (4%)

Query: 18  CSFNILFGCLAKNKHYD---TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           C    L  CL K++      +V ++  RL S    P+++   +LI  F +MG V     V
Sbjct: 91  CLMRDLIQCLQKSRRSRICCSVFNVLSRLESSKFTPNVF--GVLIIAFSEMGLVEEALWV 148

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++      P       ++ GL  + R      ++  + A G  P+V TY TLI+G CR
Sbjct: 149 YYKM---DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCR 205

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  LF+EM            P  + Y+ +  GLC E  + +A+ +F  M++  +
Sbjct: 206 QGDFLKAFRLFDEMIEKK------IFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGM 259

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ TY +++ G+C      +A  L+ EM+  G+ PNVVTF ++++ LCK  +M  A +
Sbjct: 260 LPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARK 319

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  M   GV P+  VYN L+DG+C  G ++ A  L   +E +  + DVF+Y ILI G C
Sbjct: 320 FLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLC 379

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               +E A  L  EM  KG  P  VTYNT
Sbjct: 380 GVDRMEEADGLLQEMKKKGFLPNAVTYNT 408



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 141/293 (48%), Gaps = 19/293 (6%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +  H   P V +++IL   L      +    L + +   G  P+  TYN LI+ +CK G 
Sbjct: 359 IEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGN 418

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     V  ++      P+ +TF++LI G C   ++  A  L+T++   G  PDV  YT 
Sbjct: 419 MEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTA 478

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+G  + G+T  A  L +EM     E G+   P+  T S + DGLCK+G +  A +LFL
Sbjct: 479 LIDGHFKDGNTKEAFRLHKEMQ----EAGL--HPNVFTLSCLIDGLCKDGRISDAIKLFL 532

Query: 188 KMKDENI-------------NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
                +              +P+ V YT+LI+G C      +A   F +M   G++P+V 
Sbjct: 533 AKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVF 592

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           T  VI+    +   + +   L   ++++G+ P++SVY  L  G+  +G +  A
Sbjct: 593 TCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSA 645



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 109/285 (38%), Gaps = 54/285 (18%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           PSP  +    + F     ++  +  L LF+++      PD+ T  + ++    +G +  G
Sbjct: 710 PSPHEILK-KVPFIGQKGDQRPNKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMG 768

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +   I       D     SLI        I  A  LF   +    K DV T+T++I G
Sbjct: 769 EWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRLFDGTQ----KKDVTTWTSMIVG 824

Query: 132 LCRTGHTIVALNLFEEMA-----------NGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               G    AL LF EM            NG  E  +V  P+ +T+  +       G V+
Sbjct: 825 HALHGQAEEALQLFTEMKETNKRARKNKRNGEXESSLVL-PNDVTFMGVLMACSHAGLVE 883

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           + K+ F  MK+                                  D  ++P +  F  ++
Sbjct: 884 EGKQHFRSMKE----------------------------------DYSLRPRISHFGCMV 909

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           + LC+ G + EA    E ++++ VRP+A V+ TL+    L G  N
Sbjct: 910 DLLCRAGLLTEA---YEFILKMPVRPNAVVWRTLLGACSLQGDSN 951



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 113/308 (36%), Gaps = 16/308 (5%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           DT  S    L+     P+   Y  LI   C  GR+         +  S   PD  T   +
Sbjct: 538 DTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVI 597

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL----FEEMA 149
           I+G      + +   L   +   G  P+   Y  L  G   +G+   AL+      + + 
Sbjct: 598 IQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGEGVQPLD 657

Query: 150 NGNGE-FGVVCKPDAITYSTITDG-------LCKEGFVDKAKELFLKMKDENINPDVVTY 201
             N E +G            +T+        L   G        +     +  +P  +  
Sbjct: 658 RVNSEPWGSYTIRSRFQLCVVTEKKECHSSYLTAFGIHSFVLLWYFHTILKPPSPHEILK 717

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
                G       N+A  LF +M     QP++VT  V ++     G +D    +   +  
Sbjct: 718 KVPFIGQKGDQRPNKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRH 777

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G+  D  + N+L++ +   G +  A+ LF   +     +DV ++  +I G+  + + E 
Sbjct: 778 RGLDTDLCLNNSLINMYSKCGEIGTARRLFDGTQK----KDVTTWTSMIVGHALHGQAEE 833

Query: 322 ALSLYSEM 329
           AL L++EM
Sbjct: 834 ALQLFTEM 841



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +KA +LF +M+ ++  PD+VT T  +         +  + +   +  +G+  ++   N +
Sbjct: 731 NKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSL 790

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           +N   K G++  A RL +       + D + + +++ G  L G+   A +LF  M+ 
Sbjct: 791 INMYSKCGEIGTARRLFDGT----QKKDVTTWTSMIVGHALHGQAEEALQLFTEMKE 843


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 176/305 (57%), Gaps = 7/305 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  L+S  +  + +   I   C  K   +S  +    +IL++ + PD +T T+ IKG C
Sbjct: 216 LFNVLHSFKILIEYHKTFIKQKCLLKSFEISIEYTP-PKILKNGYEPDTITLTTFIKGFC 274

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
            + +I +A     K+ A G   D  +Y TLINGLC+ G T  AL L           G +
Sbjct: 275 LKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRND------GKL 328

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
            +PD + Y+TI DG+CK+  V+ A +L+ +   + I PDV TY +LI GFC      +A 
Sbjct: 329 VQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAI 388

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF +M  + + P+V TF+++++  CK+G + EA  +L +M++  ++PD   Y++LMDG+
Sbjct: 389 DLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGY 448

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           CL   VN+A+ +F +M   G   +V SY I+ING+CK K ++ A+ L+ EM  K I P V
Sbjct: 449 CLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDV 508

Query: 339 VTYNT 343
           +TY++
Sbjct: 509 ITYSS 513



 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 174/316 (55%), Gaps = 8/316 (2%)

Query: 26  CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP 85
           CL    H    L    ++ ++G   D  +Y  LIN  CK+G       +L R       P
Sbjct: 274 CLKGQIH--QALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQP 331

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D V + ++I G+C +  + +A  L+++  +    PDVFTY  LI+G C  G    A++LF
Sbjct: 332 DVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLF 391

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
            +M + N        PD  T+S + DG CK+G + +AK +   M  ++I PDVVTY+SL+
Sbjct: 392 NKMTSKN------IIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLM 445

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            G+C  N+ N+A+ +F  M  +GV  NV ++N+++N  CK   +DEA +L + M    + 
Sbjct: 446 DGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIF 505

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD   Y++L+DG C +GR++ A EL   M   G   D+ +Y  +++  CK   ++ A++L
Sbjct: 506 PDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITL 565

Query: 326 YSEMLSKGIRPTVVTY 341
            +++  +GIRP + TY
Sbjct: 566 LTKLKGQGIRPDMNTY 581



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 178/327 (54%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   + K+KH +    L+    S  +FPD++TYN LI+ FC +G++     +
Sbjct: 331 PDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDL 390

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++      PD  TF+ L+ G C +  I EA  +   +     KPDV TY++L++G C 
Sbjct: 391 FNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCL 450

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F  M++     GV    +  +Y+ + +G CK   VD+A +LF +M  + I
Sbjct: 451 VNEVNKAESIFNTMSHR----GVT--ANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQI 504

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+TY+SLI G C +   + A  L  EM  +G QP+++T+N I++ LCK   +D+A  
Sbjct: 505 FPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAIT 564

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  +   G+RPD + Y  L+ G C +G++  A+++F  +   G   DV++Y ++I G+C
Sbjct: 565 LLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFC 624

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
                + AL+L S+M   G  P   TY
Sbjct: 625 DKGLFDEALALLSKMEENGCIPDAKTY 651



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 171/320 (53%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L             + LF ++ S  + PD+YT++IL++ FCK G +     V
Sbjct: 366 PDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNV 425

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD VT++SL+ G C  + + +A ++F  +   G   +V +Y  +ING C+
Sbjct: 426 LAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCK 485

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ LF+EM +          PD ITYS++ DGLCK G +  A EL  +M     
Sbjct: 486 IKMVDEAMKLFKEMHHKQ------IFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQ 539

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY S++   C  +  ++A  L  ++  QG++P++ T+ +++  LC++GK+++A +
Sbjct: 540 QPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARK 599

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E ++  G   D   Y  ++ GFC  G  + A  L   ME NGC+ D  +Y I+I    
Sbjct: 600 VFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLF 659

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           +  E + A  L  EM+ +G+
Sbjct: 660 EKDENDMAEKLLREMIMRGL 679



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 132/258 (51%), Gaps = 6/258 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+      P V +++ L          +   S+F  ++  G+  ++ +YNI+IN FCK+ 
Sbjct: 428 MMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIK 487

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V     +   +      PD +T++SLI GLC   RI  A  L  ++   G +PD+ TY 
Sbjct: 488 MVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYN 547

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           ++++ LC+  H   A+ L  ++  G G      +PD  TY+ +  GLC+ G ++ A+++F
Sbjct: 548 SILDALCKKHHVDKAITLLTKL-KGQG-----IRPDMNTYTILVKGLCQSGKLEDARKVF 601

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             +  +  N DV  YT +I+GFC    ++EA  L  +M + G  P+  T+ +I+  L + 
Sbjct: 602 EDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEK 661

Query: 247 GKMDEASRLLELMIQIGV 264
            + D A +LL  MI  G+
Sbjct: 662 DENDMAEKLLREMIMRGL 679


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 177/331 (53%), Gaps = 13/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P  C++N L   L K ++ D   +L     S G  PD+ TY+IL +  CK GR+   F +
Sbjct: 78  PSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFEL 137

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  +  TP+ VT+ +LI GLC  S+  +A  L   L + G  PDV TYT +++GLC+
Sbjct: 138 VKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCK 197

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL + E M          C P  ITY+ + +GLC+ G VD+A  +F +M  ++ 
Sbjct: 198 EGRLDKALKMVEGMLKRG------CTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDC 251

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ--PNVVTFNVIMNELCKNGKMDEA 252
             D + Y SL+ G+C ++   EA+ +       G++  P +  +N +M+  CK G++DE 
Sbjct: 252 TADALAYVSLVNGYCKSSRTKEAQKVV-----DGIRGTPYIDVYNALMDGYCKEGRLDEI 306

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             + E M   G  P+   YN +MDG C  G+V+ A     SM S GC+ DV SY I+I+G
Sbjct: 307 PNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDG 366

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             K  + + A  +  +M+  GI P  VTYNT
Sbjct: 367 LFKASKPKEARQVLDQMIQAGIPPDAVTYNT 397



 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 166/302 (54%), Gaps = 13/302 (4%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           +N   + PD++TYNILI+  CK  +      +L  ++    TPD VTF S++ GLC   +
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
              A +L   +    C+P   TY TLI+GLC+  +   A  L +E  +     G V  PD
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSS----GFV--PD 114

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TYS + DGLCK G +D+A EL  +M      P++VTY +LI G C A+   +A  L  
Sbjct: 115 VVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLE 174

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
            ++  G  P+VVT+ +I++ LCK G++D+A +++E M++ G  P    Y  LM+G C TG
Sbjct: 175 TLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 234

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR--PTVVT 340
           RV+ A  +F  M S  C  D  +Y  L+NGYCK+   + A     + +  GIR  P +  
Sbjct: 235 RVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEA-----QKVVDGIRGTPYIDV 289

Query: 341 YN 342
           YN
Sbjct: 290 YN 291



 Score =  203 bits (517), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 173/329 (52%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++IL   L K    D    L K ++  G  P+L TYN LI+  CK  +    + +
Sbjct: 113 PDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYEL 172

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ S F PD VT+T ++ GLC E R+ +A  +   +   GC P V TYT L+ GLCR
Sbjct: 173 LETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCR 232

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    A ++F+EM + +      C  DA+ Y ++ +G CK     +A+++   ++    
Sbjct: 233 TGRVDEAHHIFKEMVSKD------CTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG--- 283

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +  Y +L+ G+C     +E   +F +M  +G  PN+ T+N++M+ LCK+GK+DEA  
Sbjct: 284 TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 343

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            LE M   G  PD   YN ++DG     +   A+++   M   G   D  +Y  L+  +C
Sbjct: 344 FLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFC 403

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K +  + A+ +   M+  G+ P  VTYNT
Sbjct: 404 KEERFDDAVGILKNMIKAGVDPDNVTYNT 432



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 172/330 (52%), Gaps = 13/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN +   L K   ++   SL   +      P   TYN LI+  CK   V     +
Sbjct: 43  PDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTL 102

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +   + S F PD VT++ L  GLC   RI EA  L  ++   GC P++ TY TLI+GLC+
Sbjct: 103 VDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCK 162

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
              T  A  L E + +     G V  PD +TY+ I DGLCKEG +DKA ++   M     
Sbjct: 163 ASKTEKAYELLETLVSS----GFV--PDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGC 216

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V+TYT+L+ G C     +EA  +F EM+ +    + + +  ++N  CK+ +  EA +
Sbjct: 217 TPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQK 276

Query: 255 LLELMIQIGVR--PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           +++     G+R  P   VYN LMDG+C  GR++    +F  M   GC+ ++ +Y I+++G
Sbjct: 277 VVD-----GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDG 331

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            CK+ +++ A      M S G  P VV+YN
Sbjct: 332 LCKHGKVDEAFPFLESMHSAGCVPDVVSYN 361



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 177/355 (49%), Gaps = 27/355 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K    +    L + L S G  PD+ TY I+++  CK GR+     +
Sbjct: 148 PNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKM 207

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L+   TP  +T+T+L++GLC   R+ EA  +F ++ +  C  D   Y +L+NG C+
Sbjct: 208 VEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCK 267

Query: 135 TGHTIVA------------LNLFEEMANGNGEFGVV--------------CKPDAITYST 168
           +  T  A            ++++  + +G  + G +              C P+  TY+ 
Sbjct: 268 SSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNI 327

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           + DGLCK G VD+A      M      PDVV+Y  +I G   A+   EA+ +  +M+  G
Sbjct: 328 VMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAG 387

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           + P+ VT+N +M + CK  + D+A  +L+ MI+ GV PD   YNTL+ G   T R+  A 
Sbjct: 388 IPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAY 447

Query: 289 ELFVSMESNGCMRDV-FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           EL   M  NGC+     +Y  +I+  CK   ++ AL L   M   G+    VTYN
Sbjct: 448 ELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYN 502



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 167/332 (50%), Gaps = 13/332 (3%)

Query: 4   FDYMLRMHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           F ++  MH +   P V S+NI+   L K         +  ++   G+ PD  TYN L+  
Sbjct: 342 FPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQ 401

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FCK  R      +L  ++++   PD VT+ +LI GL   +R+ +A  L  ++   GC   
Sbjct: 402 FCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVS 461

Query: 122 V-FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
              TY T+I+ LC+ G    AL L + M  G+G      + + +TY+   D LCKEG +D
Sbjct: 462 ACTTYNTIIDRLCKEGCLKQALLLMDHM-TGHG-----VEANTVTYNIFIDRLCKEGRLD 515

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD-QGVQPNVVTFNVI 239
           +A  L  +M   +   D V+YT++I G C A   + A  L  EM+  +G+     TFN++
Sbjct: 516 EASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLL 572

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++   K  ++DEA  LLELM+Q G  P    YN ++   C   +V++A ELF  M   G 
Sbjct: 573 IDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGI 632

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           +    SY +LI G C     + AL +  EM S
Sbjct: 633 VASSVSYTVLIYGLCGQGRGKEALQVLEEMAS 664



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 160/328 (48%), Gaps = 9/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NI+   L K+   D      + ++S G  PD+ +YNI+I+   K  +      V
Sbjct: 320 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQV 379

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++++   PDAVT+ +L+   C E R  +A  +   +   G  PD  TY TLI+GL +
Sbjct: 380 LDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQ 439

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A  L  EM   NG     C     TY+TI D LCKEG + +A  L   M    +
Sbjct: 440 TNRLGDAYELMHEMLR-NGCVVSAC----TTYNTIIDRLCKEGCLKQALLLMDHMTGHGV 494

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VTY   I   C     +EA  L  EM       + V++  ++  LCK  ++D AS+
Sbjct: 495 EANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASK 551

Query: 255 LLELMIQI-GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           L   M+ + G+   +  +N L+D F  T R++ A  L   M   GC   V +Y ++I   
Sbjct: 552 LAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCL 611

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           CK  +++ A  L+ EM  +GI  + V+Y
Sbjct: 612 CKLDKVDKAWELFDEMAVRGIVASSVSY 639



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 164/330 (49%), Gaps = 11/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L     K    D + ++F+ +   G  P++ TYNI+++  CK G+V   F  
Sbjct: 285 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 344

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   PD V++  +I GL   S+  EA  +  ++   G  PD  TY TL+   C+
Sbjct: 345 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 404

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDEN 193
                 A+ + + M       GV   PD +TY+T+  GL +   +  A EL  +M ++  
Sbjct: 405 EERFDDAVGILKNMIKA----GV--DPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGC 458

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +     TY ++I   C      +A  L   M   GV+ N VT+N+ ++ LCK G++DEAS
Sbjct: 459 VVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEAS 518

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-NGCMRDVFSYGILING 312
            LL  M  +    D   Y T++ G C   +++RA +L   M +  G      ++ +LI+ 
Sbjct: 519 SLLSEMDTL---RDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDA 575

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + K K ++ AL+L   M+ +G  P+V+TYN
Sbjct: 576 FTKTKRLDEALTLLELMVQRGCSPSVITYN 605



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 89/155 (57%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M +  + PDV TY  LI G C A+  ++A  +  EM+D+GV P+ VTFN IM+ LCK GK
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
            + A  LL +M +   RP    YNTL+ G C    V+RAK L     S+G + DV +Y I
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L +G CK   I+ A  L  EM   G  P +VTYNT
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNT 155



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 133/331 (40%), Gaps = 45/331 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI--- 59
           + D M++    PP   ++N L     K + +D  + + K +   G+ PD  TYN LI   
Sbjct: 379 VLDQMIQAGI-PPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGL 437

Query: 60  ---------------------------------NCFCKMGRVSPGFVVLGRILRSCFTPD 86
                                            +  CK G +    +++  +       +
Sbjct: 438 SQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEAN 497

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            VT+   I  LC E R+ EA++L +++       D  +YTT+I GLC+      A  L  
Sbjct: 498 TVTYNIFIDRLCKEGRLDEASSLLSEMDTL---RDEVSYTTVIIGLCKAEQLDRASKLAR 554

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM    G    +C   + T++ + D   K   +D+A  L   M     +P V+TY  +I 
Sbjct: 555 EMVAVKG----LCIT-SHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVIT 609

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
             C  +  ++A  LF EM  +G+  + V++ V++  LC  G+  EA ++LE M       
Sbjct: 610 CLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEI 669

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           D      L       GR   A EL   M + 
Sbjct: 670 DDLKCRKLYLALRGQGRGEEAAELLRRMTTK 700


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 175/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K       +   +R+ + G  PD +TYN +I+ +CK+  V     +
Sbjct: 254 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 313

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   +   F PD VT+ SLI GLCAE  +  A  LF + +A G KPD+  Y +L+ GLC 
Sbjct: 314 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 373

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + AL +  EMA    E G  C PD  TY+ + +GLCK G +  A  +      +  
Sbjct: 374 QGLILHALQVMNEMA----EEG--CHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY 427

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV T+ +LI G+C     + A  L   M + G+ P+ +T+N ++N LCK GK++E + 
Sbjct: 428 LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNE 487

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + MI  G  P+   YN L++ FC + ++  A ++ V M   G   D  S+  LI G+C
Sbjct: 488 TFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFC 547

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +N ++EGA  L+ ++  KG   T  T+NT
Sbjct: 548 RNGDLEGAYLLFQKLEEKGYSATADTFNT 576



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 8/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +LR  P    V    ++ G  A    +D    LF ++    +FP+L  +N +++  CK G
Sbjct: 143 LLRALPHRGAVAYCTVVCGLYAHGHTHD-ARQLFDQMLHTHVFPNLAAFNKVLHALCKRG 201

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V    ++LG++++   + +  T+   I+GLC   R+ EA  L   +RA+   PDV TY 
Sbjct: 202 DVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYN 260

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLI GLC+      A++    M N        C PD  TY+TI DG CK   V +A EL 
Sbjct: 261 TLIRGLCKKSMPQEAMHYLRRMMNQG------CLPDDFTYNTIIDGYCKISMVQEATELL 314

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
                +   PD VTY SLI G C   D   A  LF E   +G++P++V +N ++  LC  
Sbjct: 315 KDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ 374

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +  A +++  M + G  PD   YN +++G C  G ++ A  +       G + DVF++
Sbjct: 375 GLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTF 434

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI+GYCK  +++ AL L   M   GI P  +TYN+
Sbjct: 435 NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 471



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 165/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   L      +  L LF    + G+ PD+  YN L+   C  G +     V
Sbjct: 324 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV 383

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PD  T+  +I GLC    I +A  +       G  PDVFT+ TLI+G C+
Sbjct: 384 MNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCK 443

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L E M     E+G+   PD ITY+++ +GLCK G V++  E F +M  +  
Sbjct: 444 RLKLDSALQLVERM----WEYGIA--PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 497

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ +TY  LI  FC +N   EA  + ++M  +G+ P+ V+FN ++   C+NG ++ A  
Sbjct: 498 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYL 557

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + + + G    A  +NTL+  F     ++ A+++F  M S G   D ++Y +LI+G C
Sbjct: 558 LFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSC 617

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K   ++ A     EM+ KG  P++ T+
Sbjct: 618 KTANVDRAYMHLVEMIKKGFIPSMSTF 644



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 158/325 (48%), Gaps = 6/325 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L         L +   +   G  PD+ TYNI+IN  CKMG +S   VV
Sbjct: 359 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVV 418

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +   +   + PD  TF +LI G C   ++  A  L  ++  +G  PD  TY +++NGLC+
Sbjct: 419 MNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCK 478

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G        F+EM          C P+ ITY+ + +  C+   +++A ++ +KM  E +
Sbjct: 479 AGKVNEVNETFQEMILKG------CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 532

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD V++ +LI GFC   D   A  LF ++ ++G      TFN ++        M  A +
Sbjct: 533 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 592

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M+  G R D+  Y  L+DG C T  V+RA    V M   G +  + ++G +IN   
Sbjct: 593 IFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLT 652

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
            N  +  A+ +   M+  G+ P VV
Sbjct: 653 VNHRVFQAVGIIHIMVKIGVVPEVV 677



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 168/361 (46%), Gaps = 38/361 (10%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC---------- 63
           PP   ++N +   L    ++D    ++ R+ + G+ PDL+T+ I +  FC          
Sbjct: 83  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALR 142

Query: 64  ------KMGRVSPGFVVLG---------------RILRSCFTPDAVTFTSLIKGLCAESR 102
                   G V+   VV G               ++L +   P+   F  ++  LC    
Sbjct: 143 LLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGD 202

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           ++EA  L  K+   G   ++FTY   I GLC  G    A+ L     +G   + V   PD
Sbjct: 203 VLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL----VDGMRAYAV---PD 255

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TY+T+  GLCK+    +A     +M ++   PD  TY ++I G+C  +   EA  L  
Sbjct: 256 VVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLK 315

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           + + +G  P+ VT+  ++N LC  G ++ A  L       G++PD  VYN+L+ G CL G
Sbjct: 316 DAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQG 375

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  A ++   M   GC  D+ +Y I+ING CK   I  A  + ++ + KG  P V T+N
Sbjct: 376 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFN 435

Query: 343 T 343
           T
Sbjct: 436 T 436



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 138/300 (46%), Gaps = 14/300 (4%)

Query: 42  RLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101
           RL+   + P    Y   I  + + GR+        R+      P A  + +++  L   +
Sbjct: 44  RLSPATIHP---LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAA 100

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
              +A  ++ ++ A G  PD+ T+T  +   C T    +AL L   + +           
Sbjct: 101 YHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG--------- 151

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
            A+ Y T+  GL   G    A++LF +M   ++ P++  +  ++   C   D  EA  L 
Sbjct: 152 -AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLL 210

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +++ +G+  N+ T+N+ +  LC+ G++ EA RL++ M    V PD   YNTL+ G C  
Sbjct: 211 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKK 269

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                A      M + GC+ D F+Y  +I+GYCK   ++ A  L  + + KG  P  VTY
Sbjct: 270 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTY 329


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 179/329 (54%), Gaps = 8/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N     L +N H    L +   +   G  PD++TYN +INC  K G +     +
Sbjct: 300 PDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGI 359

Query: 75  LGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + +++ R C  PD  TF +LI  L +++R+ EA  L  +L   G  PDV+T+  LIN LC
Sbjct: 360 VNQMVDRGCL-PDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALC 418

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   + + LFEEM +        C PD +TY+ + D LC  G +  A +L  +M+   
Sbjct: 419 KVGDPHLGIRLFEEMKSSG------CTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNG 472

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
                VTY ++I   C      EA+ +F +M  QG+  + VTFN +++ LCK  ++D+A+
Sbjct: 473 CPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDAT 532

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L+E M++ G++P+   YN+++  +C  G + +A ++  +M +NG   DV +YG LING 
Sbjct: 533 ELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGL 592

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK    + AL L   M  KGIRPT   YN
Sbjct: 593 CKAGRTQVALKLLRGMRIKGIRPTPKAYN 621



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 166/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N L   L +     T + + + ++S G+ PD  T+  L+  F + G +     V
Sbjct: 195 PDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRV 254

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ +  +P  VT   LI G C   R+ +A     +  A G +PD  TY T ++GLC+
Sbjct: 255 KAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQ 314

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            GH   AL + + M     +      PD  TY+T+ + L K G +D+AK +  +M D   
Sbjct: 315 NGHVSHALKVMDLMLQEGHD------PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGC 368

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  T+ +LI      N   EA  L  E+  +G+ P+V TFN+++N LCK G      R
Sbjct: 369 LPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIR 428

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M   G  PD   YN L+D  C  G++  A +L   MESNGC R   +Y  +I+  C
Sbjct: 429 LFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALC 488

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   IE A  ++ +M ++GI  + VT+NT
Sbjct: 489 KKMRIEEAEEVFDQMDAQGISRSAVTFNT 517



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 164/333 (49%), Gaps = 6/333 (1%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   +F  L     +    +  L +  ++   G  P   T N+LIN +CKMGRV  
Sbjct: 226 HGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVED 285

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
               + + +   F PD VT+ + + GLC    +  A  +   +   G  PDVFTY T+IN
Sbjct: 286 ALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVIN 345

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
            L + G    A  +  +M +        C PD  T++T+   L  +  +++A +L  ++ 
Sbjct: 346 CLSKNGELDEAKGIVNQMVDRG------CLPDTTTFNTLIVALSSQNRLEEALDLARELT 399

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            + ++PDV T+  LI   C   D +    LF EM   G  P+ VT+N++++ LC  GK+ 
Sbjct: 400 VKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLG 459

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            A  LL  M   G       YNT++D  C   R+  A+E+F  M++ G  R   ++  LI
Sbjct: 460 NALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLI 519

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G CK K I+ A  L  +M+ +G++P  +TYN+
Sbjct: 520 DGLCKAKRIDDATELIEQMVKEGLQPNNITYNS 552



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 159/329 (48%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L+     +  L L + L   GL PD+YT+NILIN  CK+G    G  +
Sbjct: 370 PDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL 429

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S  TPD VT+  LI  LC+  ++  A  L  ++ + GC     TY T+I+ LC+
Sbjct: 430 FEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCK 489

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                 A  +F++M A G           A+T++T+ DGLCK   +D A EL  +M  E 
Sbjct: 490 KMRIEEAEEVFDQMDAQG-------ISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEG 542

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+ +TY S++  +C   +  +A  +   M   G + +VVT+  ++N LCK G+   A 
Sbjct: 543 LQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVAL 602

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +LL  M   G+RP    YN ++        +  A  LF  M   G   D  +Y I+    
Sbjct: 603 KLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSL 662

Query: 314 CK-NKEIEGALSLYSEMLSKGIRPTVVTY 341
           C+    I+ A     EM++KG  P   ++
Sbjct: 663 CRGGGPIKEAFDFLVEMVNKGFMPEFSSF 691



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 153/331 (46%), Gaps = 9/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF-V 73
           P    +  +   L     +D +  L + +   G           +  + ++ R      +
Sbjct: 87  PSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDL 146

Query: 74  VLGRILRSCF--TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           VL ++    F    D V F  L+  L   S++    +++ ++   G +PDV T  TLI  
Sbjct: 147 VLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKA 206

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LCR      A+ + EEM++     GV   PD  T++T+  G  +EG ++ A  +  KM +
Sbjct: 207 LCRAHQVRTAVLMLEEMSS----HGVA--PDETTFTTLMQGFIEEGSIEAALRVKAKMME 260

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
              +P  VT   LI G+C      +A     + +  G +P+ VT+N  ++ LC+NG +  
Sbjct: 261 AGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSH 320

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A ++++LM+Q G  PD   YNT+++     G ++ AK +   M   GC+ D  ++  LI 
Sbjct: 321 ALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIV 380

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                  +E AL L  E+  KG+ P V T+N
Sbjct: 381 ALSSQNRLEEALDLARELTVKGLSPDVYTFN 411



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           FG + D   +  L+N L       +  +++ EM  G G      +PD +T +T+   LC+
Sbjct: 156 FGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMT-GRG-----IQPDVVTLNTLIKALCR 209

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
              V  A  +  +M    + PD  T+T+L++GF        A  +  +MM+ G  P  VT
Sbjct: 210 AHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVT 269

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            NV++N  CK G++++A   ++  I  G  PD   YNT + G C  G V+ A ++   M 
Sbjct: 270 VNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLML 329

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   DVF+Y  +IN   KN E++ A  + ++M+ +G  P   T+NT
Sbjct: 330 QEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNT 377



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 7/249 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P    ++N +   L K    +    +F ++++ G+     T+N LI+  CK  R+     
Sbjct: 474 PRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATE 533

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++ ++++    P+ +T+ S++   C +  I +AA +   + A G + DV TY TLINGLC
Sbjct: 534 LIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLC 593

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T VAL L   M           +P    Y+ +   L +   +  A  LF +M +  
Sbjct: 594 KAGRTQVALKLLRGMRIKG------IRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVG 647

Query: 194 INPDVVTYTSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
             PD +TY  + R  C       EA    +EM+++G  P   +F ++   L   G  D  
Sbjct: 648 EPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYL 707

Query: 253 SRLLELMIQ 261
              +EL+I+
Sbjct: 708 ISAIELIIE 716



 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK-MG 66
           +R+    P   ++N +   L +  +    L+LF+ +  +G  PD  TY I+    C+  G
Sbjct: 608 MRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGG 667

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
            +   F  L  ++   F P+  +F  L +GL
Sbjct: 668 PIKEAFDFLVEMVNKGFMPEFSSFRMLAEGL 698


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 179/329 (54%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L K KH D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +
Sbjct: 49  PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 108

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD  TF++LI     E +++EA  L+ ++      P + TY++LING C 
Sbjct: 109 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 168

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +FE M + +      C PD +TY+T+  G CK   V++  E+F +M    +
Sbjct: 169 HDRLDEAKQMFEFMVSKH------CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 222

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VTY  LI+G   A D + A+ +F EM+  GV PN++T+N +++ LCKNGK+++A  
Sbjct: 223 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 282

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E + +  + P    YN +++G C  G+V    +LF ++   G   DV +Y  +I+G+C
Sbjct: 283 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 342

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +    E A +L+ EM   G  P    YNT
Sbjct: 343 RKGSKEEADALFKEMKEDGTLPNSGCYNT 371



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 171/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++ ++   L K    D   +L  ++    L P +  YN +I+  CK   +     +
Sbjct: 14  PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 73

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+ VT++SLI  LC   R  +A+ L + +      PDVFT++ LI+   +
Sbjct: 74  FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 133

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  L++EM   +        P  +TYS++ +G C    +D+AK++F  M  ++ 
Sbjct: 134 EGKLVEAEKLYDEMVKRS------IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 187

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY +LI+GFC      E   +F EM  +G+  N VT+N+++  L + G  D A  
Sbjct: 188 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 247

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M+  GV P+   YNTL+DG C  G++ +A  +F  ++ +     +++Y I+I G C
Sbjct: 248 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 307

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++E    L+  +  KG++P VV YNT
Sbjct: 308 KAGKVEDGWDLFCNLSLKGVKPDVVAYNT 336



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/235 (38%), Positives = 143/235 (60%), Gaps = 6/235 (2%)

Query: 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
           AL  ++ A GC+PD+ TY  ++NGLC+ G T +A NL  +M  G  E GV      + Y+
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGV------LIYN 55

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           TI DGLCK   +D A  LF +M+ + I P+VVTY+SLI   C    W++A  L  +M+++
Sbjct: 56  TIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER 115

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
            + P+V TF+ +++   K GK+ EA +L + M++  + P    Y++L++GFC+  R++ A
Sbjct: 116 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 175

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K++F  M S  C  DV +Y  LI G+CK K +E  + ++ EM  +G+    VTYN
Sbjct: 176 KQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN 230



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 167/306 (54%), Gaps = 6/306 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           ++L  R+ + G  PDL TY +++N  CK G     F +L ++ +    P  + + ++I G
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
           LC    + +A  LF ++   G +P+V TY++LI+ LC  G    A  L  +M        
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK---- 116

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
               PD  T+S + D   KEG + +A++L+ +M   +I+P +VTY+SLI GFC  +  +E
Sbjct: 117 --INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 174

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           AK +F  M+ +   P+VVT+N ++   CK  +++E   +   M Q G+  +   YN L+ 
Sbjct: 175 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 234

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G    G  + A+E+F  M S+G   ++ +Y  L++G CKN ++E A+ ++  +    + P
Sbjct: 235 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 294

Query: 337 TVVTYN 342
           T+ TYN
Sbjct: 295 TIYTYN 300



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 124/250 (49%), Gaps = 8/250 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F++M+  H   P V ++N L     K K  +  + +F+ ++  GL  +  TYNILI   
Sbjct: 178 MFEFMVSKH-CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 236

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + G       +   ++     P+ +T+ +L+ GLC   ++ +A  +F  L+    +P +
Sbjct: 237 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 296

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +TY  +I G+C+ G      +LF  ++      GV  KPD + Y+T+  G C++G  ++A
Sbjct: 297 YTYNIMIEGMCKAGKVEDGWDLFCNLSLK----GV--KPDVVAYNTMISGFCRKGSKEEA 350

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +MK++   P+   Y +LIR      D   +  L  EM   G   +  T  ++ N 
Sbjct: 351 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNM 410

Query: 243 LCKNGKMDEA 252
           L  +G++D++
Sbjct: 411 L-HDGRLDKS 419



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 85/159 (53%)

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L  +M  +   PD+VTY  ++ G C   D + A  L  +M    ++P V+ +N I++ LC
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K   MD+A  L + M   G+RP+   Y++L+   C  GR + A  L   M       DVF
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  LI+ + K  ++  A  LY EM+ + I P++VTY++
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSS 161


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 175/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K       +   +R+ + G  PD +TYN +I+ +CK+  V     +
Sbjct: 253 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 312

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   +   F PD VT+ SLI GLCAE  +  A  LF + +A G KPD+  Y +L+ GLC 
Sbjct: 313 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 372

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + AL +  EMA    E G  C PD  TY+ + +GLCK G +  A  +      +  
Sbjct: 373 QGLILHALQVMNEMA----EEG--CHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY 426

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV T+ +LI G+C     + A  L   M + G+ P+ +T+N ++N LCK GK++E + 
Sbjct: 427 LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNE 486

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + MI  G  P+   YN L++ FC + ++  A ++ V M   G   D  S+  LI G+C
Sbjct: 487 TFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFC 546

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +N ++EGA  L+ ++  KG   T  T+NT
Sbjct: 547 RNGDLEGAYLLFQKLEEKGYSATADTFNT 575



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 8/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +LR  P    V    ++ G  A    +D    LF ++    +FP+L  +N +++  CK G
Sbjct: 142 LLRALPHRGAVAYCTVVCGLYAHGHTHD-ARQLFDQMLHTHVFPNLAAFNKVLHALCKRG 200

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V    ++LG++++   + +  T+   I+GLC   R+ EA  L   +RA+   PDV TY 
Sbjct: 201 DVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYN 259

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLI GLC+      A++    M N        C PD  TY+TI DG CK   V +A EL 
Sbjct: 260 TLIRGLCKKSMPQEAMHYLRRMMNQG------CLPDDFTYNTIIDGYCKISMVQEATELL 313

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
                +   PD VTY SLI G C   D   A  LF E   +G++P++V +N ++  LC  
Sbjct: 314 KDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ 373

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +  A +++  M + G  PD   YN +++G C  G ++ A  +       G + DVF++
Sbjct: 374 GLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTF 433

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI+GYCK  +++ AL L   M   GI P  +TYN+
Sbjct: 434 NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 470



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 165/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   L      +  L LF    + G+ PD+  YN L+   C  G +     V
Sbjct: 323 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV 382

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PD  T+  +I GLC    I +A  +       G  PDVFT+ TLI+G C+
Sbjct: 383 MNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCK 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L E M     E+G+   PD ITY+++ +GLCK G V++  E F +M  +  
Sbjct: 443 RLKLDSALQLVERM----WEYGIA--PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 496

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ +TY  LI  FC +N   EA  + ++M  +G+ P+ V+FN ++   C+NG ++ A  
Sbjct: 497 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYL 556

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + + + G    A  +NTL+  F     ++ A+++F  M S G   D ++Y +LI+G C
Sbjct: 557 LFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSC 616

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K   ++ A     EM+ KG  P++ T+
Sbjct: 617 KTANVDRAYMHLVEMIKKGFIPSMSTF 643



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 158/325 (48%), Gaps = 6/325 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L         L +   +   G  PD+ TYNI+IN  CKMG +S   VV
Sbjct: 358 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVV 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +   +   + PD  TF +LI G C   ++  A  L  ++  +G  PD  TY +++NGLC+
Sbjct: 418 MNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCK 477

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G        F+EM          C P+ ITY+ + +  C+   +++A ++ +KM  E +
Sbjct: 478 AGKVNEVNETFQEMILKG------CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 531

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD V++ +LI GFC   D   A  LF ++ ++G      TFN ++        M  A +
Sbjct: 532 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 591

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M+  G R D+  Y  L+DG C T  V+RA    V M   G +  + ++G +IN   
Sbjct: 592 IFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLT 651

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
            N  +  A+ +   M+  G+ P VV
Sbjct: 652 VNHRVFQAVGIIHIMVKIGVVPEVV 676



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 168/361 (46%), Gaps = 38/361 (10%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC---------- 63
           PP   ++N +   L    ++D    ++ R+ + G+ PDL+T+ I +  FC          
Sbjct: 82  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALR 141

Query: 64  ------KMGRVSPGFVVLG---------------RILRSCFTPDAVTFTSLIKGLCAESR 102
                   G V+   VV G               ++L +   P+   F  ++  LC    
Sbjct: 142 LLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGD 201

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           ++EA  L  K+   G   ++FTY   I GLC  G    A+ L     +G   + V   PD
Sbjct: 202 VLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRL----VDGMRAYAV---PD 254

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TY+T+  GLCK+    +A     +M ++   PD  TY ++I G+C  +   EA  L  
Sbjct: 255 VVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLK 314

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           + + +G  P+ VT+  ++N LC  G ++ A  L       G++PD  VYN+L+ G CL G
Sbjct: 315 DAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQG 374

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  A ++   M   GC  D+ +Y I+ING CK   I  A  + ++ + KG  P V T+N
Sbjct: 375 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFN 434

Query: 343 T 343
           T
Sbjct: 435 T 435



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 138/300 (46%), Gaps = 14/300 (4%)

Query: 42  RLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101
           RL+   + P    Y   I  + + GR+        R+      P A  + +++  L   +
Sbjct: 43  RLSPATIHP---LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAA 99

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
              +A  ++ ++ A G  PD+ T+T  +   C T    +AL L   + +           
Sbjct: 100 YHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG--------- 150

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
            A+ Y T+  GL   G    A++LF +M   ++ P++  +  ++   C   D  EA  L 
Sbjct: 151 -AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLL 209

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +++ +G+  N+ T+N+ +  LC+ G++ EA RL++ M    V PD   YNTL+ G C  
Sbjct: 210 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKK 268

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                A      M + GC+ D F+Y  +I+GYCK   ++ A  L  + + KG  P  VTY
Sbjct: 269 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTY 328


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 175/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K       +   +R+ + G  PD +TYN +I+ +CK+  V     +
Sbjct: 256 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 315

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   +   F PD VT+ SLI GLCAE  +  A  LF + +A G KPD+  Y +L+ GLC 
Sbjct: 316 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 375

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + AL +  EMA    E G  C PD  TY+ + +GLCK G +  A  +      +  
Sbjct: 376 QGLILHALQVMNEMA----EEG--CHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY 429

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV T+ +LI G+C     + A  L   M + G+ P+ +T+N ++N LCK GK++E + 
Sbjct: 430 LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNE 489

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + MI  G  P+   YN L++ FC + ++  A ++ V M   G   D  S+  LI G+C
Sbjct: 490 TFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFC 549

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +N ++EGA  L+ ++  KG   T  T+NT
Sbjct: 550 RNGDLEGAYLLFQKLEEKGYSATADTFNT 578



 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 8/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +LR  P    V    ++ G  A    +D    LF ++    +FP+L  +N +++  CK G
Sbjct: 145 LLRALPHRGAVAYCTVVCGLYAHGHTHDA-RQLFDQMLHTHVFPNLAAFNKVLHALCKRG 203

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V    ++LG++++   + +  T+   I+GLC   R+ EA  L   +RA+   PDV TY 
Sbjct: 204 DVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYN 262

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLI GLC+      A++    M N        C PD  TY+TI DG CK   V +A EL 
Sbjct: 263 TLIRGLCKKSMPQEAMHYLRRMMNQG------CLPDDFTYNTIIDGYCKISMVQEATELL 316

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
                +   PD VTY SLI G C   D   A  LF E   +G++P++V +N ++  LC  
Sbjct: 317 KDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ 376

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +  A +++  M + G  PD   YN +++G C  G ++ A  +       G + DVF++
Sbjct: 377 GLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTF 436

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI+GYCK  +++ AL L   M   GI P  +TYN+
Sbjct: 437 NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 473



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 165/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   L      +  L LF    + G+ PD+  YN L+   C  G +     V
Sbjct: 326 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV 385

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PD  T+  +I GLC    I +A  +       G  PDVFT+ TLI+G C+
Sbjct: 386 MNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCK 445

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L E M     E+G+   PD ITY+++ +GLCK G V++  E F +M  +  
Sbjct: 446 RLKLDSALQLVERM----WEYGIA--PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 499

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ +TY  LI  FC +N   EA  + ++M  +G+ P+ V+FN ++   C+NG ++ A  
Sbjct: 500 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYL 559

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + + + G    A  +NTL+  F     ++ A+++F  M S G   D ++Y +LI+G C
Sbjct: 560 LFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSC 619

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K   ++ A     EM+ KG  P++ T+
Sbjct: 620 KTANVDRAYMHLVEMIKKGFIPSMSTF 646



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 158/325 (48%), Gaps = 6/325 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L         L +   +   G  PD+ TYNI+IN  CKMG +S   VV
Sbjct: 361 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVV 420

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +   +   + PD  TF +LI G C   ++  A  L  ++  +G  PD  TY +++NGLC+
Sbjct: 421 MNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCK 480

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G        F+EM          C P+ ITY+ + +  C+   +++A ++ +KM  E +
Sbjct: 481 AGKVNEVNETFQEMILKG------CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 534

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD V++ +LI GFC   D   A  LF ++ ++G      TFN ++        M  A +
Sbjct: 535 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 594

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M+  G R D+  Y  L+DG C T  V+RA    V M   G +  + ++G +IN   
Sbjct: 595 IFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLT 654

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
            N  +  A+ +   M+  G+ P VV
Sbjct: 655 VNHRVFQAVGIIHIMVKIGVVPEVV 679



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 168/361 (46%), Gaps = 38/361 (10%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC---------- 63
           PP   ++N +   L    ++D    ++ R+ + G+ PDL+T+ I +  FC          
Sbjct: 85  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALR 144

Query: 64  ------KMGRVSPGFVVLG---------------RILRSCFTPDAVTFTSLIKGLCAESR 102
                   G V+   VV G               ++L +   P+   F  ++  LC    
Sbjct: 145 LLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGD 204

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           ++EA  L  K+   G   ++FTY   I GLC  G    A+ L + M      + V   PD
Sbjct: 205 VLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMR----AYAV---PD 257

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TY+T+  GLCK+    +A     +M ++   PD  TY ++I G+C  +   EA  L  
Sbjct: 258 VVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLK 317

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           + + +G  P+ VT+  ++N LC  G ++ A  L       G++PD  VYN+L+ G CL G
Sbjct: 318 DAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQG 377

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  A ++   M   GC  D+ +Y I+ING CK   I  A  + ++ + KG  P V T+N
Sbjct: 378 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFN 437

Query: 343 T 343
           T
Sbjct: 438 T 438



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 138/300 (46%), Gaps = 14/300 (4%)

Query: 42  RLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101
           RL+   + P    Y   I  + + GR+        R+      P A  + +++  L   +
Sbjct: 46  RLSPATIHP---LYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAA 102

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
              +A  ++ ++ A G  PD+ T+T  +   C T    +AL L   + +           
Sbjct: 103 YHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG--------- 153

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
            A+ Y T+  GL   G    A++LF +M   ++ P++  +  ++   C   D  EA  L 
Sbjct: 154 -AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLL 212

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +++ +G+  N+ T+N+ +  LC+ G++ EA RL++ M    V PD   YNTL+ G C  
Sbjct: 213 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKK 271

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                A      M + GC+ D F+Y  +I+GYCK   ++ A  L  + + KG  P  VTY
Sbjct: 272 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTY 331


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 177/341 (51%), Gaps = 41/341 (12%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
            + + + S  + PD   Y  LI+ F K+G V         +L    +PD +T+T+LI+G 
Sbjct: 349 KVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF 408

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
               +++E   LF ++ + G KPD  TYTTLI+  C+ G  + A +L  EM     + G+
Sbjct: 409 GQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV----QMGM 464

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN------------------------ 193
              P+ +TY  + DGLCK G +D A EL  +M+ +                         
Sbjct: 465 T--PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQA 522

Query: 194 -----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
                      I+PD +TYT++I  +C   D ++A  L  EM+D+G+QP VVTFNV+MN 
Sbjct: 523 IKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNG 582

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G +++  RLL  M++ G+ PDA  YNTLM   C+   +N   +++  M + G   D
Sbjct: 583 FCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPD 642

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y ILI G+CK + ++ A  LY EM+ KG  PTV +YN 
Sbjct: 643 SNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNA 683



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 170/339 (50%), Gaps = 7/339 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD ML    SP  + ++  L     +        +LF  + S GL PD  TY  LI+ +C
Sbjct: 386 FDEMLSKKISPDYI-TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G +   F +   +++   TP+ VT+ +LI GLC    +  A  L  ++R  G + +V 
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVC 504

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            Y +++NG+C+ G+   A+ L +EM            PDAITY+T+ D  C+ G +DKA 
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAG------IDPDAITYTTVIDAYCRLGDIDKAH 558

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L  +M D  + P VVT+  L+ GFC      +   L   M+++G+ P+ +T+N +M + 
Sbjct: 559 KLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQH 618

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C    M+  +++ + M   GV PD++ YN L+ G C    +  A  L+  M   G +  V
Sbjct: 619 CIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTV 678

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            SY  LI  + K K+I  A  L+ EM   G+      YN
Sbjct: 679 TSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYN 717



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 159/297 (53%), Gaps = 6/297 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+  +  +YNI+I   C++G+V     +L ++     TPD V+++++I G C    + +A
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKA 312

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L   ++  G KP+ +TY ++I  LC+ G +  A  +  EM +          PD + Y
Sbjct: 313 LKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQK------IIPDNVVY 366

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+  G  K G V  A + F +M  + I+PD +TYT+LI+GF       E + LF EM+ 
Sbjct: 367 TTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMIS 426

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G++P+ VT+  +++  CK G+M  A  L   M+Q+G+ P+   Y  L+DG C  G ++ 
Sbjct: 427 RGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDT 486

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A EL   M   G   +V  Y  ++NG CK   IE A+ L  EM   GI P  +TY T
Sbjct: 487 ANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+   +      L   GH   A  L +++ +    +G+V   D+            EG +
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLS----YGLVVTVDSCNAFLSRIANNSEG-I 242

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           + A ++F +     I+ +  +Y  +I   C      EA  L ++M  +   P+VV+++ +
Sbjct: 243 EMAIKVFCEY---GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTV 299

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C  G++ +A +L++ M   G++P+   YN+++   C  G+   A+++   M S   
Sbjct: 300 IDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKI 359

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + D   Y  LI+G+ K   +  A   + EMLSK I P  +TY T
Sbjct: 360 IPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTT 403


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 167/294 (56%), Gaps = 6/294 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD++ YN LIN FCKM R+     VL R+    F+PD VT+  +I  LC+  ++  A  +
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 211

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             +L +  C+P V TYT LI      G    AL L +EM +         KPD  TY+TI
Sbjct: 212 LDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRG------LKPDMFTYNTI 265

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             G+CKEG VD+A E+   ++ +   PDV++Y  L+R       W E + L  +M  +  
Sbjct: 266 IRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 325

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PNVVT+++++  LC++GK++EA  LL+LM + G+ PDA  Y+ L+  FC  GR++ A E
Sbjct: 326 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 385

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +M S+GC+ D+ +Y  ++   CKN + + AL ++ ++   G  P   +YNT
Sbjct: 386 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 439



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 167/357 (46%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    D    +  R+ S    PD  TYNI+I   C  G++     V
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 211

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L     P  +T+T LI+    E  + EA  L  ++ + G KPD+FTY T+I G+C+
Sbjct: 212 LDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCK 271

Query: 135 TG-----------------------HTIVALNLFEEMANGNGE------FGVVCKPDAIT 165
            G                       + I+   L  +     GE      F   C P+ +T
Sbjct: 272 EGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 331

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           YS +   LC++G +++A  L   MK++ + PD  +Y  LI  FC     + A      M+
Sbjct: 332 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 391

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G  P++V +N ++  LCKNGK D+A  +   + ++G  P++S YNT+      +G   
Sbjct: 392 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 451

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           RA  + + M SNG   D  +Y  +I+  C+   ++ A  L  +M S    P+VVTYN
Sbjct: 452 RALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYN 508



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 147/298 (49%), Gaps = 6/298 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   + K    D    + + L   G  PD+ +YNIL+      G+   G  +
Sbjct: 257 PDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKL 316

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      P+ VT++ LI  LC + +I EA  L   ++  G  PD ++Y  LI   CR
Sbjct: 317 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 376

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA+   E M +        C PD + Y+T+   LCK G  D+A E+F K+ +   
Sbjct: 377 EGRLDVAIEFLETMISDG------CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGC 430

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+  +Y ++      + D   A  + +EM+  G+ P+ +T+N +++ LC+ G +D+A  
Sbjct: 431 SPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFE 490

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           LL  M      P    YN ++ GFC   R+  A ++  SM  NGC  +  +Y +LI G
Sbjct: 491 LLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEG 548



 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 141/283 (49%), Gaps = 6/283 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           L +    P V S+NIL   L     ++    L  ++ S    P++ TY+ILI   C+ G+
Sbjct: 285 LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGK 344

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L  +     TPDA ++  LI   C E R+  A      + + GC PD+  Y T
Sbjct: 345 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 404

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           ++  LC+ G    AL +F ++    GE G  C P++ +Y+T+   L   G   +A  + L
Sbjct: 405 VLATLCKNGKADQALEIFGKL----GEVG--CSPNSSSYNTMFSALWSSGDKIRALHMIL 458

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M    I+PD +TY S+I   C     ++A  L ++M      P+VVT+N+++   CK  
Sbjct: 459 EMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAH 518

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           ++++A  +L+ M+  G RP+ + Y  L++G    G    A EL
Sbjct: 519 RIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 561



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 142/277 (51%), Gaps = 7/277 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++IL   L ++   +  ++L K +   GL PD Y+Y+ LI  FC+ GR+      
Sbjct: 327 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 386

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD V + +++  LC   +  +A  +F KL   GC P+  +Y T+ + L  
Sbjct: 387 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 446

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G  I AL++  EM + NG       PD ITY+++   LC+EG VDKA EL + M+    
Sbjct: 447 SGDKIRALHMILEMVS-NG-----IDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEF 500

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P VVTY  ++ GFC A+   +A  +   M+  G +PN  T+ V++  +   G   EA  
Sbjct: 501 HPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAME 560

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           L   +++I    + S +  L   F L   + R+ + F
Sbjct: 561 LANDLVRINAISEYS-FKRLHRTFPLLNVLQRSSQTF 596



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 7/245 (2%)

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C     +E+  L   +   G  PDV   T LI G     +   A+ + E +     +FG 
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILE----KFG- 150

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
             +PD   Y+ + +G CK   +D A  +  +M+ ++ +PD VTY  +I   C     + A
Sbjct: 151 --QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 208

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +  +++    QP V+T+ +++      G +DEA +LL+ M+  G++PD   YNT++ G
Sbjct: 209 LKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRG 268

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  G V+RA E+  ++E  GC  DV SY IL+       + E    L ++M S+   P 
Sbjct: 269 MCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 328

Query: 338 VVTYN 342
           VVTY+
Sbjct: 329 VVTYS 333



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G   ++  L   M  +  NPDV+  T LI+GF    +  +A    +E++++  QP+V
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKA-VRVMEILEKFGQPDV 154

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
             +N ++N  CK  ++D+A+R+L+ M      PD   YN ++   C  G+++ A ++   
Sbjct: 155 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQ 214

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + S+ C   V +Y ILI        ++ AL L  EMLS+G++P + TYNT
Sbjct: 215 LLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNT 264


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 187/353 (52%), Gaps = 29/353 (8%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N +   L KN        L + +   G+FPD   Y  +I+ FCK+G VS    +   + 
Sbjct: 315 YNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMR 374

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R    PD VT+TS+I G+C   +++EA  +F ++   G +PD  TYT LI+G C+ G   
Sbjct: 375 RKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMK 434

Query: 140 VALNLFEEM---------------ANG---NGEFGVV-----------CKPDAITYSTIT 170
            A ++  +M               A+G   NGE  V             +P+  TY+TI 
Sbjct: 435 EAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIV 494

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +GLCK G +++  +L  +M      PD +TYT+L+  +C   +  +A  L   M+++ +Q
Sbjct: 495 NGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQ 554

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P +VTFNV+MN  C +G +++  RL+E M++ G+ P+A+ +N+LM  +C+   +    E+
Sbjct: 555 PTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEI 614

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +M   G M D  +Y ILI G+CK + ++ A  L+ EM+ KG   T  TY+ 
Sbjct: 615 YKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDA 667



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 166/310 (53%), Gaps = 6/310 (1%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D VL L   L   GL PD Y YN +I   CK G V     +L  + +    PD V +T++
Sbjct: 294 DKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTV 353

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I G C    +  A  LF ++R     PD+ TYT++I+G+C++G  + A  +F EM     
Sbjct: 354 ISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGL 413

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           E      PD +TY+ + DG CK G + +A  +  +M  + + P+VVTYT+L  G C   +
Sbjct: 414 E------PDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGE 467

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            + A  L  EM  +G+QPNV T+N I+N LCK G +++  +L+E M   G  PD   Y T
Sbjct: 468 IDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTT 527

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           LMD +C  G + +A EL   M +      + ++ +L+NG+C +  +E    L   ML KG
Sbjct: 528 LMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKG 587

Query: 334 IRPTVVTYNT 343
           I P   T+N+
Sbjct: 588 IMPNATTFNS 597



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 182/322 (56%), Gaps = 6/322 (1%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           NI+  CL +        +L  ++   G FPD+ +Y ++++ +C++G +     ++  +  
Sbjct: 246 NIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKG 305

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD   + ++I  LC    ++EA  L   +R +G  PD   YTT+I+G C+ G+   
Sbjct: 306 KGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSA 365

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A  LF+EM            PD +TY+++  G+CK G + +A+E+F +M  + + PD VT
Sbjct: 366 ACKLFDEMRRKK------IVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVT 419

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           YT+LI G+C A +  EA  +  +M+ +G+ PNVVT+  + + LCKNG++D A+ LL  M 
Sbjct: 420 YTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMS 479

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + G++P+   YNT+++G C  G + +  +L   M+  G   D  +Y  L++ YCK  E+ 
Sbjct: 480 RKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMA 539

Query: 321 GALSLYSEMLSKGIRPTVVTYN 342
            A  L   ML+K ++PT+VT+N
Sbjct: 540 KAHELLRIMLNKRLQPTLVTFN 561



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 167/332 (50%), Gaps = 7/332 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R    P  V   +++ G     K  +    +F  +   GL PD  TY  LI+ +
Sbjct: 369 LFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEA-REMFNEMLVKGLEPDEVTYTALIDGY 427

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +   F V  ++++   TP+ VT+T+L  GLC    I  A  L  ++   G +P+V
Sbjct: 428 CKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNV 487

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +TY T++NGLC+ G+    + L EEM +  G +     PD ITY+T+ D  CK G + KA
Sbjct: 488 YTYNTIVNGLCKIGNIEQTVKLMEEM-DLAGFY-----PDTITYTTLMDAYCKMGEMAKA 541

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL   M ++ + P +VT+  L+ GFC +    + + L   M+++G+ PN  TFN +M +
Sbjct: 542 HELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQ 601

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C    M   + + + M   GV PD++ YN L+ G C    +  A  L   M   G    
Sbjct: 602 YCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVT 661

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
             +Y  LI G+ K K+   A  L+ EM   G+
Sbjct: 662 AATYDALIRGFYKRKKFVEARKLFEEMRKHGL 693



 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 167/307 (54%), Gaps = 6/307 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           + +F+    +G+  +  + NI+++C C++G+V     +L ++      PD V++  ++ G
Sbjct: 227 VKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSG 286

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
            C    + +   L  +L+  G KPD + Y  +I  LC+ G  + A    E++  G  ++G
Sbjct: 287 YCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEA----EQLLRGMRKWG 342

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
           V   PD + Y+T+  G CK G V  A +LF +M+ + I PD+VTYTS+I G C +    E
Sbjct: 343 VF--PDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVE 400

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A+ +F EM+ +G++P+ VT+  +++  CK G+M EA  +   M+Q G+ P+   Y  L D
Sbjct: 401 AREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALAD 460

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C  G ++ A EL   M   G   +V++Y  ++NG CK   IE  + L  EM   G  P
Sbjct: 461 GLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYP 520

Query: 337 TVVTYNT 343
             +TY T
Sbjct: 521 DTITYTT 527



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 131/272 (48%), Gaps = 18/272 (6%)

Query: 81  SCFTPDAVTFTSLIKGLCAESRI--MEAAALFTKL-----RAFGCKPDVFTYTTLINGLC 133
           S  + D  T   L+   CA+ +I   ++  LFT++     + +G  P VF     +  L 
Sbjct: 125 SVASNDIQTAKRLVFEFCAKPKIDVSKSFHLFTEMLIYTYKDWGSHPLVFDLYFQV--LV 182

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDA--ITYSTITDGLCKEGFVDKAKELFLKMKD 191
             G  + A  LF ++      +GVV   D+  +  S ++   C    +  A ++F +  +
Sbjct: 183 ENGFVLEAQKLFHKLLR----YGVVVSVDSCNLFLSRLS---CNFEGIKIAVKVFEEFPE 235

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             +  + V+   ++   C      EA  L ++M D+G  P+VV++ V+++  C+ G++D+
Sbjct: 236 LGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDK 295

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
             +L++ +   G++PD  +YN ++   C  G V  A++L   M   G   D   Y  +I+
Sbjct: 296 VLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVIS 355

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G+CK   +  A  L+ EM  K I P +VTY +
Sbjct: 356 GFCKLGNVSAACKLFDEMRRKKIVPDIVTYTS 387


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 177/341 (51%), Gaps = 41/341 (12%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
            + + + S  + PD   Y  LI+ F K+G V         +L    +PD +T+T+LI+G 
Sbjct: 349 KVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF 408

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
               +++E   LF ++ + G KPD  TYTTLI+  C+ G  + A +L  EM     + G+
Sbjct: 409 GQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV----QMGM 464

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN------------------------ 193
              P+ +TY  + DGLCK G +D A EL  +M+ +                         
Sbjct: 465 T--PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQA 522

Query: 194 -----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
                      I+PD +TYT++I  +C   D ++A  L  EM+D+G+QP VVTFNV+MN 
Sbjct: 523 IKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNG 582

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G +++  RLL  M++ G+ PDA  YNTLM   C+   +N   +++  M + G   D
Sbjct: 583 FCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPD 642

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y ILI G+CK + ++ A  LY EM+ KG  PTV +YN 
Sbjct: 643 SNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNA 683



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 169/339 (49%), Gaps = 7/339 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD ML    SP  + ++  L     +        +LF  + S GL PD  TY  LI+ +C
Sbjct: 386 FDEMLSKKISPDYI-TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G +   F +   +++   TP+ VT+ +LI GLC    +  A  L  ++R  G + +V 
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVC 504

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            Y +++NG+C+ G+   A+ L +EM            PDAITY+T+ D  C+ G +DKA 
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAG------IDPDAITYTTVIDAYCRLGDIDKAH 558

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L  +M D  + P VVT+  L+ GFC      +   L   M+++G+ P+ +T+N +M + 
Sbjct: 559 KLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQH 618

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C    M+  +++ + M   GV PD++ YN L+ G C    +  A  L+  M   G +  V
Sbjct: 619 CIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTV 678

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            SY  LI  + K ++   A  L+ EM   G+      YN
Sbjct: 679 TSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYN 717



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 159/297 (53%), Gaps = 6/297 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+  +  +YNI+I   C++G+V     +L ++     TPD V+++++I G C    + +A
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKA 312

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L   ++  G KP+ +TY ++I  LC+ G +  A  +  EM +          PD + Y
Sbjct: 313 LKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQK------IIPDNVVY 366

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+  G  K G V  A + F +M  + I+PD +TYT+LI+GF       E + LF EM+ 
Sbjct: 367 TTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMIS 426

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G++P+ VT+  +++  CK G+M  A  L   M+Q+G+ P+   Y  L+DG C  G ++ 
Sbjct: 427 RGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDT 486

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A EL   M   G   +V  Y  ++NG CK   IE A+ L  EM   GI P  +TY T
Sbjct: 487 ANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+   +      L   GH   A  L +++ +    +G+V   D+            EG +
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLS----YGLVVTVDSCNAFLSRIANNSEG-I 242

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           + A ++F +     I+ +  +Y  +I   C      EA  L ++M  +   P+VV+++ +
Sbjct: 243 EMAIKVFCEY---GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTV 299

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C  G++ +A +L++ M   G++P+   YN+++   C  G+   A+++   M S   
Sbjct: 300 IDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKI 359

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + D   Y  LI+G+ K   +  A   + EMLSK I P  +TY T
Sbjct: 360 IPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTT 403


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 178/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    D    L K ++S G+ P+L +YN++IN  C+ G +   + +
Sbjct: 43  PNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEI 102

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +    FTPD VT+ +L+ G C E    +A  +  ++   G  P V TYT LIN +C+
Sbjct: 103 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 162

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A+  F++M           +P+  TY+T+ DG  ++G +++A  +  +M +   
Sbjct: 163 ARNLNRAMEFFDQMRIRG------LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF 216

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P VVTY + I G C      EA  +  EM+++G+ P+VV+++ I++  C+ G++D A +
Sbjct: 217 SPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQ 276

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M++ GV PDA  Y++L+ G C   R+  A +L   M   G   D F+Y  LIN YC
Sbjct: 277 MKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYC 336

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              ++  AL L+ EM+ KG  P  VTY+
Sbjct: 337 VEGDLNKALHLHDEMIHKGFLPDAVTYS 364



 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 160/294 (54%), Gaps = 6/294 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P++YTYNILI  FC +G +  G    G + R+   P+ VT+ +LI   C   RI EA  L
Sbjct: 8   PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
              + + G +P++ +Y  +INGLCR G    A  + EEM    G  G    PD +TY+T+
Sbjct: 68  LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM----GYKGFT--PDEVTYNTL 121

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +G CKEG   +A  +  +M    ++P VVTYT+LI   C A + N A   F +M  +G+
Sbjct: 122 LNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGL 181

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +PN  T+  +++   + G ++EA R+L  M + G  P    YN  + G C+  R+  A  
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALG 241

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   M   G   DV SY  +I+G+C+  E++ A  +  EM+ KG+ P  VTY++
Sbjct: 242 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 295



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 174/337 (51%), Gaps = 7/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+R   SP  V ++NIL             L  F  +   G  P++ TYN LI+ +CKMG
Sbjct: 1   MIRSRVSPN-VYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMG 59

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R+   F +L  +      P+ +++  +I GLC E  + EA  +  ++   G  PD  TY 
Sbjct: 60  RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 119

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TL+NG C+ G+   AL +  EM   NG       P  +TY+ + + +CK   +++A E F
Sbjct: 120 TLLNGYCKEGNFHQALVIHAEMVR-NG-----VSPSVVTYTALINSMCKARNLNRAMEFF 173

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M+   + P+  TYT+LI GF      NEA  +  EM + G  P+VVT+N  ++  C  
Sbjct: 174 DQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVL 233

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            +M+EA  +++ M++ G+ PD   Y+T++ GFC  G ++RA ++   M   G   D  +Y
Sbjct: 234 ERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTY 293

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI G C+ + +  A  L  EML  G+ P   TY T
Sbjct: 294 SSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTT 330



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 175/341 (51%), Gaps = 21/341 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   + K ++ +  +  F ++   GL P+  TY  LI+ F + G ++  + +
Sbjct: 148 PSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRI 207

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  S F+P  VT+ + I G C   R+ EA  +  ++   G  PDV +Y+T+I+G CR
Sbjct: 208 LNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCR 267

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + +EM     E GV   PDA+TYS++  GLC+   + +A +L  +M D  +
Sbjct: 268 KGELDRAFQMKQEMV----EKGV--SPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGL 321

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TYT+LI  +C   D N+A  L  EM+ +G  P+ VT++V++N L K  +  EA R
Sbjct: 322 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKR 381

Query: 255 LLELMIQIGVRPDASVYNTLMD---------------GFCLTGRVNRAKELFVSMESNGC 299
           LL  +I     P    Y+TL++               GFC+ G ++ A  +F SM     
Sbjct: 382 LLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNH 441

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
                 Y ++I+G+C+   +  A +LY EM+  G  P  VT
Sbjct: 442 KPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVT 482



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 172/329 (52%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N++   L +         + + +   G  PD  TYN L+N +CK G      V+
Sbjct: 78  PNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVI 137

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R+  +P  VT+T+LI  +C    +  A   F ++R  G +P+  TYTTLI+G  R
Sbjct: 138 HAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 197

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +  EM     E G    P  +TY+    G C    +++A  +  +M ++ +
Sbjct: 198 QGLLNEAYRILNEMT----ESGF--SPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 251

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV+Y+++I GFC   + + A  +  EM+++GV P+ VT++ ++  LC+  ++ EA  
Sbjct: 252 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 311

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+ +G+ PD   Y TL++ +C+ G +N+A  L   M   G + D  +Y +LING  
Sbjct: 312 LSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLN 371

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K      A  L  +++ +   P+ VTY+T
Sbjct: 372 KQARTREAKRLLFKLIYEESVPSDVTYDT 400



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 138/283 (48%), Gaps = 21/283 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N         +  +  L + + +   GL PD+ +Y+ +I+ FC+ G +   F +
Sbjct: 218 PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQM 277

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++    +PDAVT++SLI+GLC   R+ EA  L  ++   G  PD FTYTTLIN  C 
Sbjct: 278 KQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCV 337

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL+L +EM +          PDA+TYS + +GL K+    +AK L  K+  E  
Sbjct: 338 EGDLNKALHLHDEMIHKG------FLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEES 391

Query: 195 NPDVVTY---------------TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            P  VTY                +LI+GFC     +EA  +F  M+++  +P    +NVI
Sbjct: 392 VPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVI 451

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           ++  C+ G + +A  L + MI  G  P      TL+      G
Sbjct: 452 IHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 494



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 21/188 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++  L          +  L L   +   G  PD  TY++LIN   K  R      
Sbjct: 322 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKR 381

Query: 74  VLGRILRSCFTPDAVTF---------------TSLIKGLCAESRIMEAAALFTKLRAFGC 118
           +L +++     P  VT+                +LIKG C +  + EA  +F  +     
Sbjct: 382 LLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNH 441

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           KP    Y  +I+G CR G+   A NL++EM +     G V  P  +T  T+   L KEG 
Sbjct: 442 KPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHS----GFV--PHTVTVITLIKALFKEGM 495

Query: 179 VDKAKELF 186
            ++  E+ 
Sbjct: 496 NEEMSEVI 503


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 167/294 (56%), Gaps = 6/294 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD++ YN LIN FCKM R+     VL R+    F+PD VT+  +I  LC+  ++  A  +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             +L +  C+P V TYT LI      G    AL L +EM +         KPD  TY+TI
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRG------LKPDMFTYNTI 269

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             G+CKEG VD+A E+   ++ +   PDV++Y  L+R       W E + L  +M  +  
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PNVVT+++++  LC++GK++EA  LL+LM + G+ PDA  Y+ L+  FC  GR++ A E
Sbjct: 330 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 389

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +M S+GC+ D+ +Y  ++   CKN + + AL ++ ++   G  P   +YNT
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 443



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 167/357 (46%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    D    +  R+ S    PD  TYNI+I   C  G++     V
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L     P  +T+T LI+    E  + EA  L  ++ + G KPD+FTY T+I G+C+
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 135 TG-----------------------HTIVALNLFEEMANGNGE------FGVVCKPDAIT 165
            G                       + I+   L  +     GE      F   C P+ +T
Sbjct: 276 EGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           YS +   LC++G +++A  L   MK++ + PD  +Y  LI  FC     + A      M+
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G  P++V +N ++  LCKNGK D+A  +   + ++G  P++S YNT+      +G   
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 455

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           RA  + + M SNG   D  +Y  +I+  C+   ++ A  L  +M S    P+VVTYN
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYN 512



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 146/298 (48%), Gaps = 6/298 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   + K    D    + + L   G  PD+ +YNIL+      G+   G  +
Sbjct: 261 PDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKL 320

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      P+ VT++ LI  LC + +I EA  L   ++  G  PD ++Y  LI   CR
Sbjct: 321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA+   E M +        C PD + Y+T+   LCK G  D+A E+F K+ +   
Sbjct: 381 EGRLDVAIEFLETMISDG------CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGC 434

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+  +Y ++      + D   A  + +EMM  G+ P+ +T+N +++ LC+ G +DEA  
Sbjct: 435 SPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFE 494

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           LL  M      P    YN ++ GFC   R+  A  +  SM  NGC  +  +Y +LI G
Sbjct: 495 LLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 142/283 (50%), Gaps = 6/283 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           L +  S P V S+NIL   L     ++    L  ++ S    P++ TY+ILI   C+ G+
Sbjct: 289 LELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGK 348

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L  +     TPDA ++  LI   C E R+  A      + + GC PD+  Y T
Sbjct: 349 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 408

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           ++  LC+ G    AL +F ++    GE G  C P++ +Y+T+   L   G   +A  + L
Sbjct: 409 VLATLCKNGKADQALEIFGKL----GEVG--CSPNSSSYNTMFSALWSSGDKIRALHMIL 462

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M    I+PD +TY S+I   C     +EA  L ++M      P+VVT+N+++   CK  
Sbjct: 463 EMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAH 522

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           ++++A  +LE M+  G RP+ + Y  L++G    G    A EL
Sbjct: 523 RIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 142/278 (51%), Gaps = 9/278 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++IL   L ++   +  ++L K +   GL PD Y+Y+ LI  FC+ GR+      
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD V + +++  LC   +  +A  +F KL   GC P+  +Y T+ + L  
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450

Query: 135 TGHTIVALNL-FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +G  I AL++  E M+NG         PD ITY+++   LC+EG VD+A EL + M+   
Sbjct: 451 SGDKIRALHMILEMMSNG-------IDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +P VVTY  ++ GFC A+   +A  +   M+  G +PN  T+ V++  +   G   EA 
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 563

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
            L   +++I    + S +  L   F L   + R+ + F
Sbjct: 564 ELANDLVRIDAISEYS-FKRLHRTFPLLNVLQRSSQTF 600



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 7/245 (2%)

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C     +E+  L   +   G  PDV   T LI G     +   A+ + E +     +FG 
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILE----KFG- 154

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
             +PD   Y+ + +G CK   +D A  +  +M+ ++ +PD VTY  +I   C     + A
Sbjct: 155 --QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 212

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +  +++    QP V+T+ +++      G +DEA +L++ M+  G++PD   YNT++ G
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  G V+RA E+  ++E  G   DV SY IL+       + E    L ++M S+   P 
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332

Query: 338 VVTYN 342
           VVTY+
Sbjct: 333 VVTYS 337



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G   ++  L   M  +  NPDV+  T LI+GF    +  +A    +E++++  QP+V
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKA-VRVMEILEKFGQPDV 158

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
             +N ++N  CK  ++D+A+R+L+ M      PD   YN ++   C  G+++ A ++   
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + S+ C   V +Y ILI        ++ AL L  EMLS+G++P + TYNT
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 167/294 (56%), Gaps = 6/294 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD++ YN LIN FCKM R+     VL R+    F+PD VT+  +I  LC+  ++  A  +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             +L +  C+P V TYT LI      G    AL L +EM +         KPD  TY+TI
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRG------LKPDMFTYNTI 269

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             G+CKEG VD+A E+   ++ +   PDV++Y  L+R       W E + L  +M  +  
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PNVVT+++++  LC++GK++EA  LL+LM + G+ PDA  Y+ L+  FC  GR++ A E
Sbjct: 330 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 389

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +M S+GC+ D+ +Y  ++   CKN + + AL ++ ++   G  P   +YNT
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 443



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 163/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    D    +  R+ S    PD  TYNI+I   C  G++     V
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L     P  +T+T LI+    E  + EA  L  ++ + G KPD+FTY T+I G+C+
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +   +          C+PD I+Y+ +   L  +G  ++ ++L  KM  E  
Sbjct: 276 EGMVDRAFEMVRNLELKG------CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+VVTY+ LI   C      EA  L   M ++G+ P+  +++ ++   C+ G++D A  
Sbjct: 330 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 389

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            LE MI  G  PD   YNT++   C  G+ ++A E+F  +   GC  +  SY  + +   
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + +   AL +  EM+S GI P  +TYN+
Sbjct: 450 SSGDKIRALHMILEMMSNGIDPDEITYNS 478



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 146/298 (48%), Gaps = 6/298 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   + K    D    + + L   G  PD+ +YNIL+      G+   G  +
Sbjct: 261 PDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKL 320

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      P+ VT++ LI  LC + +I EA  L   ++  G  PD ++Y  LI   CR
Sbjct: 321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA+   E M +        C PD + Y+T+   LCK G  D+A E+F K+ +   
Sbjct: 381 EGRLDVAIEFLETMISDG------CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGC 434

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+  +Y ++      + D   A  + +EMM  G+ P+ +T+N +++ LC+ G +DEA  
Sbjct: 435 SPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFE 494

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           LL  M      P    YN ++ GFC   R+  A  +  SM  NGC  +  +Y +LI G
Sbjct: 495 LLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 141/283 (49%), Gaps = 6/283 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           L +    P V S+NIL   L     ++    L  ++ S    P++ TY+ILI   C+ G+
Sbjct: 289 LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGK 348

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L  +     TPDA ++  LI   C E R+  A      + + GC PD+  Y T
Sbjct: 349 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 408

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           ++  LC+ G    AL +F ++    GE G  C P++ +Y+T+   L   G   +A  + L
Sbjct: 409 VLATLCKNGKADQALEIFGKL----GEVG--CSPNSSSYNTMFSALWSSGDKIRALHMIL 462

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M    I+PD +TY S+I   C     +EA  L ++M      P+VVT+N+++   CK  
Sbjct: 463 EMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAH 522

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           ++++A  +LE M+  G RP+ + Y  L++G    G    A EL
Sbjct: 523 RIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 142/278 (51%), Gaps = 9/278 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++IL   L ++   +  ++L K +   GL PD Y+Y+ LI  FC+ GR+      
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD V + +++  LC   +  +A  +F KL   GC P+  +Y T+ + L  
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450

Query: 135 TGHTIVALNL-FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +G  I AL++  E M+NG         PD ITY+++   LC+EG VD+A EL + M+   
Sbjct: 451 SGDKIRALHMILEMMSNG-------IDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +P VVTY  ++ GFC A+   +A  +   M+  G +PN  T+ V++  +   G   EA 
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 563

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
            L   +++I    + S +  L   F L   + R+ + F
Sbjct: 564 ELANDLVRIDAISEYS-FKRLHRTFPLLNVLQRSSQTF 600



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 122/245 (49%), Gaps = 7/245 (2%)

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C     +E+  L   +   G  PDV   T LI G     +   A+ + E +     +FG 
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILE----KFG- 154

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
             +PD   Y+ + +G CK   +D A  +  +M+ ++ +PD VTY  +I   C     + A
Sbjct: 155 --QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 212

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +  +++    QP V+T+ +++      G +DEA +L++ M+  G++PD   YNT++ G
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  G V+RA E+  ++E  GC  DV SY IL+       + E    L ++M S+   P 
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332

Query: 338 VVTYN 342
           VVTY+
Sbjct: 333 VVTYS 337



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G   ++  L   M  +  NPDV+  T LI+GF    +  +A    +E++++  QP+V
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKA-VRVMEILEKFGQPDV 158

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
             +N ++N  CK  ++D+A+R+L+ M      PD   YN ++   C  G+++ A ++   
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + S+ C   V +Y ILI        ++ AL L  EMLS+G++P + TYNT
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 183/347 (52%), Gaps = 11/347 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNK---HYDTVLSLFKRLN---SIGLFPDLYTYN 56
           +FD +L  H  P  V +FN L   +++ +     +  +S F R+    S  + P+L TY+
Sbjct: 36  LFDELLH-HARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNLCTYS 94

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA-ALFTKLRA 115
           ILI  FC+MG +  GF   G IL++ +  D +    L+KGLC   R+ EA   L  ++  
Sbjct: 95  ILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPE 154

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
            GC PD  +YT L+ GLC       AL L   MA+ +G     C P+ ++YS + +G   
Sbjct: 155 LGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGR---RCPPNVVSYSIVINGFFT 211

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           EG VDK   LFL+M D  I PDVVTYT++I G C A  ++ A+ +F +M+D G +PN  T
Sbjct: 212 EGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYT 271

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N +++     GK  E  ++LE M   G++PD   Y +L++  C  GR   A+  F SM 
Sbjct: 272 YNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMI 331

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             G    V +YGILI+GY     +    S    M+  G+ P    +N
Sbjct: 332 RKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFN 378



 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 184/359 (51%), Gaps = 29/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++  +   L K + +D    +F+++   G  P+ YTYN LI+ +  +G+      
Sbjct: 231 PPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQ 290

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      PD  T+ SL+  LC   R  EA   F  +   G KP V TY  LI+G  
Sbjct: 291 MLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYA 350

Query: 134 RTG-----HTIVAL----------NLFEEMANGNGEFGVVCK--------------PDAI 164
             G     H+ + L          ++F    +   + G++ K              P+ +
Sbjct: 351 TKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVV 410

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            Y  + D LCK G VD A+  F +M +E + P++V + SL+ G C  + W  A+ L  EM
Sbjct: 411 NYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEM 470

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +DQG+ PN V FN ++  LC  G++ E  RL++LM  +GVRPDA  Y  L+ G+CLTGR 
Sbjct: 471 LDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRT 530

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + A+++F  M S G      +Y  L++GYC    I+ A  L+ EML KG+ P VVTYNT
Sbjct: 531 DEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNT 589



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 170/327 (51%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    FNI F   AK    D  + +F ++   GL P++  Y  LI+  CK+GRV    V 
Sbjct: 372 PDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK 431

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++    TP+ V F SL+ GLC   +   A  L  ++   G  P+   + TLI  LC 
Sbjct: 432 FNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCN 491

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  +    L + M +      V  +PDA +Y+ +  G C  G  D+A+++F  M    +
Sbjct: 492 VGRVMEGRRLIDLMEH------VGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGL 545

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P  VTY +L+ G+C A+  ++A CLF EM+ +GV P VVT+N I++ L +  +  EA  
Sbjct: 546 SPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKE 605

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   MI  G + D   YN +++G C +  V+ A ++F S+ S G   ++ ++ I+I    
Sbjct: 606 LYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALL 665

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K    E A+ L++ + + G+ P VVTY
Sbjct: 666 KGGRKEDAMDLFAAIPANGLVPNVVTY 692



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 174/338 (51%), Gaps = 7/338 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M+R     P V ++ IL    A       + S    +   GL PD + +NI  + + 
Sbjct: 327 FDSMIR-KGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYA 385

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G +     +  ++ +   +P+ V + +LI  LC   R+ +A   F ++   G  P++ 
Sbjct: 386 KCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIV 445

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            + +L+ GLC       A  L  EM +       +C P+A+ ++T+   LC  G V + +
Sbjct: 446 VFNSLVYGLCTVDKWERAEELVYEMLDQG-----IC-PNAVFFNTLICNLCNVGRVMEGR 499

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L   M+   + PD  +YT LI G+C     +EA+ +F  M+  G+ P  VT+N +++  
Sbjct: 500 RLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGY 559

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C   ++D+A  L   M++ GV P    YNT++ G   T R + AKEL+++M ++G   D+
Sbjct: 560 CSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDI 619

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           ++Y I++NG CK+  ++ A  ++  + SKG++  ++T+
Sbjct: 620 YTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITF 657



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 139/287 (48%), Gaps = 6/287 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           L   +  +G+ PD ++Y  LI+ +C  GR      V   ++    +P  VT+ +L+ G C
Sbjct: 501 LIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYC 560

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
           + SRI +A  LF ++   G  P V TY T+++GL +T     A  L+  M N     G  
Sbjct: 561 SASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINS----GTK 616

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C  D  TY+ I +GLCK   VD+A ++F  +  + +  +++T+T +I          +A 
Sbjct: 617 C--DIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 674

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF  +   G+ PNVVT+ ++   L + G ++E   L   M + G  P++ + N L+   
Sbjct: 675 DLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 734

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
              G ++RA      ++      +  +  +L++ +  ++    A SL
Sbjct: 735 LHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSL 781



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 18/232 (7%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP----DAITYSTITDGLCK 175
           P++ TY+ LI   CR GH          + +G   FG++ K     D I  + +  GLC 
Sbjct: 88  PNLCTYSILIGRFCRMGH----------LEHGFAAFGLILKTGWRMDHIAINQLLKGLCH 137

Query: 176 EGFVDKAKELFL-KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ---P 231
              V +A ++ L +M +    PD V+YT L++G C      EA  L   M D   +   P
Sbjct: 138 GKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPP 197

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           NVV++++++N     G++D+   L   MI  G+ PD   Y T++DG C     +RA+ +F
Sbjct: 198 NVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVF 257

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M  NG   + ++Y  LI+GY    + +  + +  EM ++G++P   TY +
Sbjct: 258 QQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGS 309



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 114/256 (44%), Gaps = 9/256 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+ +  SP  V ++N L          D    LF+ +   G+ P + TYN +++  
Sbjct: 536 VFDGMVSIGLSPTEV-TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 594

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            +  R S    +   ++ S    D  T+  ++ GLC  + + EA  +F  L + G + ++
Sbjct: 595 FQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNI 654

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            T+T +I  L + G    A++LF  + ANG         P+ +TY  + + L +EG +++
Sbjct: 655 ITFTIMIGALLKGGRKEDAMDLFAAIPANG-------LVPNVVTYRLVAENLIEEGSLEE 707

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
              LF  M+     P+     +L+R   +  D + A     ++ ++       T +++M+
Sbjct: 708 FDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMS 767

Query: 242 ELCKNGKMDEASRLLE 257
               +     A  L E
Sbjct: 768 IFTSDEYQHHAKSLPE 783



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 7/220 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           +C+F  MLR   +P  V ++N +   L + K +     L+  + + G   D+YTYNI++N
Sbjct: 569 YCLFREMLRKGVTPG-VVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILN 627

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK   V   F +   +       + +TFT +I  L    R  +A  LF  + A G  P
Sbjct: 628 GLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVP 687

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V TY  +   L   G      +LF  M   NG       P++   + +   L   G + 
Sbjct: 688 NVVTYRLVAENLIEEGSLEEFDSLFSAMEK-NG-----TAPNSQMLNALVRRLLHRGDIS 741

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           +A     K+ + N + +  T + L+  F      + AK L
Sbjct: 742 RAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSL 781


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 175/332 (52%), Gaps = 12/332 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++ +     +      VL L + +   GL P+ YTYN +I   CK G+V+    V
Sbjct: 286 PDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERV 345

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD V +T+LI G C    +  A  LF +++     PD  TYT +I GLC+
Sbjct: 346 LREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQ 405

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           TG  + A  LF EM         VCK   PD +TY+ + DG CKEG + +A  L  +M  
Sbjct: 406 TGRVMEADKLFHEM---------VCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQ 456

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             + P++VTYT+L  G C   + + A  L  EM  +G++ N+ T+N ++N LCK G +D+
Sbjct: 457 MGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQ 516

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A +L++ M   G  PDA  Y TLMD +C +  + RA EL   M        V ++ +L+N
Sbjct: 517 AVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMN 576

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G+C +  +E    L   ML KGI P   TYN+
Sbjct: 577 GFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 608



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 172/309 (55%), Gaps = 6/309 (1%)

Query: 35  TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94
           +   LF  +    + PD  TY  +I   C+ GRV     +   ++     PD VT+T+LI
Sbjct: 376 SAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 435

Query: 95  KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            G C E ++ EA +L  ++   G  P++ TYT L +GLC+ G    A  L  EM     E
Sbjct: 436 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLE 495

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
             +       TY+++ +GLCK G +D+A +L   M+    +PD VTYT+L+  +C + + 
Sbjct: 496 LNIY------TYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREM 549

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             A  L  +M+D+ +QP VVTFNV+MN  C +G +++  +LL+ M++ G+ P+A+ YN+L
Sbjct: 550 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 609

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +  +C+   +    E++  M + G + D  +Y ILI G+CK + ++ A  L+ +M+ KG 
Sbjct: 610 IKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGF 669

Query: 335 RPTVVTYNT 343
             TV +YN 
Sbjct: 670 NLTVSSYNA 678



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 177/324 (54%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+NI+   L +         L  ++   G  PD+ +Y+ +IN +C++G +     ++  +
Sbjct: 255 SYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEM 314

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+  T+  +I  LC   ++ EA  +  ++ + G  PD   YTTLI+G C+ G+ 
Sbjct: 315 QIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNV 374

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LF+EM            PD ITY+ +  GLC+ G V +A +LF +M  + + PD 
Sbjct: 375 SSAYRLFDEMQKRK------ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 428

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTYT+LI G+C      EA  L  +M+  G+ PN+VT+  + + LCK G++D A+ LL  
Sbjct: 429 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE 488

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + G+  +   YN+L++G C  G +++A +L   ME  G   D  +Y  L++ YCK++E
Sbjct: 489 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 548

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           +  A  L  +ML + ++PTVVT+N
Sbjct: 549 MVRAHELLRQMLDRELQPTVVTFN 572



 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 166/309 (53%), Gaps = 8/309 (2%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI-LRSCFTPDAVTFTSLI 94
            L +F     +G+  +  +YNI+ +  C++GRV     +L ++ LR C  PD ++++++I
Sbjct: 237 ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCI-PDVISYSTVI 295

Query: 95  KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            G C    +     L  +++  G KP+ +TY  +I  LC+TG    A  +  EM +    
Sbjct: 296 NGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISE--- 352

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
            G+   PD + Y+T+ DG CK G V  A  LF +M+   I+PD +TYT++I G C     
Sbjct: 353 -GIA--PDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRV 409

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            EA  LF EM+ + ++P+ VT+  +++  CK GKM EA  L   M+Q+G+ P+   Y  L
Sbjct: 410 MEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTAL 469

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            DG C  G V+ A EL   M   G   ++++Y  L+NG CK   I+ A+ L  +M   G 
Sbjct: 470 ADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF 529

Query: 335 RPTVVTYNT 343
            P  VTY T
Sbjct: 530 HPDAVTYTT 538



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 167/342 (48%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD M +   SP  +    ++ G L +         LF  +    L PD  TY  LI+
Sbjct: 378 YRLFDEMQKRKISPDFITYTAVICG-LCQTGRVMEADKLFHEMVCKRLEPDEVTYTALID 436

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK G++   F +  ++L+   TP+ VT+T+L  GLC    +  A  L  ++   G + 
Sbjct: 437 GYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLEL 496

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +++TY +L+NGLC+ G+   A+ L ++M            PDA+TY+T+ D  CK   + 
Sbjct: 497 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH------PDAVTYTTLMDAYCKSREMV 550

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A EL  +M D  + P VVT+  L+ GFC +    + + L   M+++G+ PN  T+N ++
Sbjct: 551 RAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 610

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
            + C    M   + +   M   GV PD + YN L+ G C    +  A  L   M   G  
Sbjct: 611 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFN 670

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             V SY  LI G+ K K+   A  L+ +M  +G+      YN
Sbjct: 671 LTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYN 712



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 148/329 (44%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K        SL  ++  +GL P++ TY  L +  CK G V     +
Sbjct: 426 PDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANEL 485

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R     +  T+ SL+ GLC    I +A  L   +   G  PD  TYTTL++  C+
Sbjct: 486 LHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCK 545

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +   + A  L  +M +         +P  +T++ + +G C  G ++  ++L   M ++ I
Sbjct: 546 SREMVRAHELLRQMLDRE------LQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGI 599

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY SLI+ +C  N+      ++  M  +GV P+  T+N+++   CK   M EA  
Sbjct: 600 MPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWF 659

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+  G     S YN L+ GF    +   A+ELF  M   G + D   Y I  +   
Sbjct: 660 LHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINY 719

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              ++E  L L  E + K +   + T NT
Sbjct: 720 DEGKMELTLELCDEAIEKCLVGDIQTKNT 748



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 112/232 (48%), Gaps = 11/232 (4%)

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA--ITYSTITD 171
           + +G  P VF        L   G    A  LF++M N    +G++   D+  +  S +++
Sbjct: 176 KDWGSDPRVFD--IFFQVLVEAGMLDEARKLFDKMLN----YGLLISVDSCNLFISHLSE 229

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
            L  +G +  A ++F++  +  +  +  +Y  +    C      EA  L ++M  +G  P
Sbjct: 230 DL--DG-IKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIP 286

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           +V++++ ++N  C+ G++    +L+E M   G++P+   YN ++   C TG+V  A+ + 
Sbjct: 287 DVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVL 346

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M S G   D   Y  LI+G+CK   +  A  L+ EM  + I P  +TY  
Sbjct: 347 REMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTA 398


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 182/339 (53%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF  MLR     P + SF+ L    ++N+H D  L  F+ +   GL PD   Y +L++ +
Sbjct: 245 IFGEMLR-QGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGY 303

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G +     +   +L      D + + +++ GLC E  + +A  LF ++   G  PD 
Sbjct: 304 CRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDF 363

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +T+TTLI+G C+ G+   AL+LF  M   N       KPD + Y+T+ DG CK G ++KA
Sbjct: 364 YTFTTLIHGHCQDGNMTKALSLFGTMTQRN------IKPDIVAYNTLIDGFCKVGEMEKA 417

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL+  M    I P+ +TY  LI  +C     +EA  L+  M+++G++P +VT N ++  
Sbjct: 418 SELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKG 477

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C++G   +A   L  MI  GV PD   YNTL++GF     +++A      ME  G + D
Sbjct: 478 YCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPD 537

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +Y +++NG+C+   ++ A  +  +M+ KGI P   TY
Sbjct: 538 IITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTY 576



 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 14/331 (4%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++N L G   +    +    +   +   GL P L+TYN +IN  CK GR +    +L 
Sbjct: 153 MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 212

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L    +PD  T+ +L+   C      EA  +F ++   G  PD+ ++++LI    R  
Sbjct: 213 EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNR 272

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           H   AL  F +M     +FG+V  PD + Y+ +  G C+ G + +A    LK++DE +  
Sbjct: 273 HLDQALVYFRDMK----KFGLV--PDNVIYTVLMHGYCRNGNMLEA----LKIRDEMLEQ 322

Query: 197 ----DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
               DV+ Y +++ G C      +A  LF EM+++G  P+  TF  +++  C++G M +A
Sbjct: 323 GCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKA 382

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L   M Q  ++PD   YNTL+DGFC  G + +A EL+  M S     +  +YGILIN 
Sbjct: 383 LSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINA 442

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           YC    +  A  L+  M+ KGI+PT+VT NT
Sbjct: 443 YCSVGHVSEAFRLWDVMIEKGIKPTLVTCNT 473



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 173/364 (47%), Gaps = 41/364 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
            P + ++N +   L K   Y     +   + +IGL PD  TYN L+   C+    S    
Sbjct: 185 KPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKE 244

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + G +LR    PD V+F+SLI        + +A   F  ++ FG  PD   YT L++G C
Sbjct: 245 IFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYC 304

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE----------------- 176
           R G+ + AL + +EM          C  D I Y+TI +GLCKE                 
Sbjct: 305 RNGNMLEALKIRDEMLEQG------CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 358

Query: 177 ------------------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
                             G + KA  LF  M   NI PD+V Y +LI GFC   +  +A 
Sbjct: 359 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKAS 418

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L+  M+ + + PN +T+ +++N  C  G + EA RL ++MI+ G++P     NT++ G+
Sbjct: 419 ELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGY 478

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C +G  ++A E    M + G   D  SY  LING+ +   ++ A    ++M  +G+ P +
Sbjct: 479 CRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDI 538

Query: 339 VTYN 342
           +TYN
Sbjct: 539 ITYN 542



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 6/323 (1%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N L G L K    +    + + +   G+  ++YT NI++N  CK G+       L  +  
Sbjct: 87  NSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEG 146

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
           +    D VT+ +LI   C E  + EA  +   +   G KP +FTY  +INGLC+ G    
Sbjct: 147 NGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYAR 206

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A  +  EM N      +   PD  TY+T+    C+     +AKE+F +M  + + PD+V+
Sbjct: 207 AKGILIEMLN------IGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVS 260

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           ++SLI  F      ++A   F +M   G+ P+ V + V+M+  C+NG M EA ++ + M+
Sbjct: 261 FSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEML 320

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + G   D   YNT+++G C    +  A +LF  M   G + D +++  LI+G+C++  + 
Sbjct: 321 EQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMT 380

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            ALSL+  M  + I+P +V YNT
Sbjct: 381 KALSLFGTMTQRNIKPDIVAYNT 403



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 160/324 (49%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++L     + +        F+ L S G    +   N L+    K+  V   + V   ++
Sbjct: 51  FDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVV 110

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           RS    +  T   ++  LC + +  +  +  +++   G   D+ TY TLI   CR G   
Sbjct: 111 RSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLE 170

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  +   MA+         KP   TY+ I +GLCK+G   +AK + ++M +  ++PD  
Sbjct: 171 EAFEIMNSMADKG------LKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTT 224

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY +L+   C  ++++EAK +F EM+ QGV P++V+F+ ++    +N  +D+A      M
Sbjct: 225 TYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDM 284

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + G+ PD  +Y  LM G+C  G +  A ++   M   GC+ DV +Y  ++NG CK K +
Sbjct: 285 KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKML 344

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A  L+ EM+ +G  P   T+ T
Sbjct: 345 TDADKLFDEMVERGALPDFYTFTT 368



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 6/282 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N +   L K K       LF  +   G  PD YT+  LI+  C+ G ++    + G
Sbjct: 328 VIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFG 387

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + +    PD V + +LI G C    + +A+ L+  + +    P+  TY  LIN  C  G
Sbjct: 388 TMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVG 447

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           H   A  L++ M     E G+  KP  +T +T+  G C+ G   KA E   +M  + + P
Sbjct: 448 HVSEAFRLWDVMI----EKGI--KPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAP 501

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D ++Y +LI GF   ++ ++A     +M  +G+ P+++T+NV+MN  C+ G+M EA  +L
Sbjct: 502 DHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVL 561

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
             MI+ G+ PD S Y  L++G      +N A      M   G
Sbjct: 562 RKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRG 603



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
            P + ++N L     K    +    L+  + S  +FP+  TY ILIN +C +G VS  F 
Sbjct: 395 KPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFR 454

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   ++     P  VT  ++IKG C      +A     ++ A G  PD  +Y TLING  
Sbjct: 455 LWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFV 514

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R  +   A     +M     + G++  PD ITY+ + +G C++G + +A+ +  KM ++ 
Sbjct: 515 REDNMDKAFLWINKME----KEGLL--PDIITYNVVMNGFCRQGRMQEAELVLRKMIEKG 568

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           INPD  TYT+LI G    ++ NEA     EM+ +G  P+ V
Sbjct: 569 INPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDV 609



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 53/112 (47%)

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N + F++++    +  K+ E +    ++   G     +  N+L+ G      V  A E+ 
Sbjct: 47  NNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVH 106

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  +G   +V++  I++N  CK+ + +   S  SEM   GI   +VTYNT
Sbjct: 107 REVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNT 158


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 181/334 (54%), Gaps = 6/334 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P + SF+ L G  A+    D  ++  + +   GL PD   Y ++I  FC+ G 
Sbjct: 226 MRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGL 285

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +S    V   ++     PD VT+ +L+ GLC E R+++A  L  ++R  G  PD+ T+TT
Sbjct: 286 MSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTT 345

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+G C  G    AL LF+ M N         +PD +TY+T+ DG+C++G +DKA +L+ 
Sbjct: 346 LIHGYCIEGKLDKALQLFDTMLNQR------LRPDIVTYNTLIDGMCRQGDLDKANDLWD 399

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M    I P+ VTY+ LI   C      +A     EM+++G+ PN++T+N I+   C++G
Sbjct: 400 DMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSG 459

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            + +  + L+ M+   V PD   YNTL+ G+    +++ A +L   ME      DV +Y 
Sbjct: 460 NVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYN 519

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +LING+  +  ++ A  ++ +M +KGI P   TY
Sbjct: 520 MLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 553



 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 184/330 (55%), Gaps = 10/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SF IL G   +    +  L ++K +   G+ PDL +++ LI  F + G++      
Sbjct: 198 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 257

Query: 75  LGRILRSCF--TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           L R +R CF   PD V +T +I G C    + +A  +  ++   GC PDV TY TL+NGL
Sbjct: 258 L-REMR-CFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 315

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+    + A  L  EM     E GV   PD  T++T+  G C EG +DKA +LF  M ++
Sbjct: 316 CKERRLLDAEGLLNEMR----ERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ 369

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PD+VTY +LI G C   D ++A  L+ +M  + + PN VT++++++  C+ G++++A
Sbjct: 370 RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 429

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
              L+ MI  G+ P+   YN+++ G+C +G V++ ++    M  N    D+ +Y  LI+G
Sbjct: 430 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHG 489

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           Y K  ++  A  L + M  + ++P VVTYN
Sbjct: 490 YIKEDKMHDAFKLLNMMEKEKVQPDVVTYN 519



 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 183/360 (50%), Gaps = 41/360 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           + NI+     K   +D V ++   +    +FPD+ T+N++++   + G       ++  +
Sbjct: 97  TLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSM 156

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P  VT+ S++KGLC      +A  +F ++  FG  PDV ++T LI G CR G  
Sbjct: 157 VSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEI 216

Query: 139 IVALNLFEEMANGNGE-------------------------------FGVVCKPDAITYS 167
             AL +++EM +   +                               FG+V  PD + Y+
Sbjct: 217 EEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV--PDGVIYT 274

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENIN----PDVVTYTSLIRGFCYANDWNEAKCLFIE 223
            +  G C+ G +  A    L+++DE +     PDVVTY +L+ G C      +A+ L  E
Sbjct: 275 MVIGGFCRAGLMSDA----LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE 330

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M ++GV P++ TF  +++  C  GK+D+A +L + M+   +RPD   YNTL+DG C  G 
Sbjct: 331 MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 390

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +++A +L+  M S     +  +Y ILI+ +C+  ++E A     EM++KGI P ++TYN+
Sbjct: 391 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 450



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 154/291 (52%), Gaps = 6/291 (2%)

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
           YT NI+++ +CK         V+  + + C  PD VT   ++           A AL   
Sbjct: 96  YTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDS 155

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           + + G KP + TY +++ GLCR+G    A  +F+EM     +FGV   PD  +++ +  G
Sbjct: 156 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM----DDFGVA--PDVRSFTILIGG 209

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            C+ G +++A +++ +M+   I PD+V+++ LI  F      + A     EM   G+ P+
Sbjct: 210 FCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPD 269

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
            V + +++   C+ G M +A R+ + M+  G  PD   YNTL++G C   R+  A+ L  
Sbjct: 270 GVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLN 329

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M   G   D+ ++  LI+GYC   +++ AL L+  ML++ +RP +VTYNT
Sbjct: 330 EMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNT 380



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 6/256 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    PP +C+F  L          D  L LF  + +  L PD+ TYN LI+  C+ G 
Sbjct: 331 MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 390

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +   +      P+ VT++ LI   C + ++ +A     ++   G  P++ TY +
Sbjct: 391 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 450

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I G CR+G+        ++M            PD ITY+T+  G  KE  +  A +L  
Sbjct: 451 IIKGYCRSGNVSKGQKFLQKMMVNK------VSPDLITYNTLIHGYIKEDKMHDAFKLLN 504

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M+ E + PDVVTY  LI GF    +  EA  +F +M  +G++P+  T+  ++N     G
Sbjct: 505 MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 564

Query: 248 KMDEASRLLELMIQIG 263
              EA +L + M+Q G
Sbjct: 565 NSKEAFQLHDEMLQRG 580



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 91/150 (60%), Gaps = 2/150 (1%)

Query: 195 NPDVVTYT--SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N +V TYT   ++  +C A ++++   +  EM  + V P+VVT NV+++   + G  + A
Sbjct: 90  NSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAA 149

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L++ M+  G++P    YN+++ G C +G  ++A E+F  M+  G   DV S+ ILI G
Sbjct: 150 MALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGG 209

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +C+  EIE AL +Y EM  +GI+P +V+++
Sbjct: 210 FCRVGEIEEALKIYKEMRHRGIKPDLVSFS 239



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 69/161 (42%)

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +E+   +   +  P    +  LIR +  +    EA   F  ++D  V       N ++  
Sbjct: 10  REIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAA 69

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L + G    A+    L+       +    N ++  +C     ++   +   ME      D
Sbjct: 70  LSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPD 129

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V ++ ++++   +  + E A++L   M+SKG++P +VTYN+
Sbjct: 130 VVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNS 170


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 181/334 (54%), Gaps = 6/334 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P + SF+ L G  A+    D  ++  + +   GL PD   Y ++I  FC+ G 
Sbjct: 287 MRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGL 346

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +S    V   ++     PD VT+ +L+ GLC E R+++A  L  ++R  G  PD+ T+TT
Sbjct: 347 MSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTT 406

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+G C  G    AL LF+ M N         +PD +TY+T+ DG+C++G +DKA +L+ 
Sbjct: 407 LIHGYCIEGKLDKALQLFDTMLNQR------LRPDIVTYNTLIDGMCRQGDLDKANDLWD 460

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M    I P+ VTY+ LI   C      +A     EM+++G+ PN++T+N I+   C++G
Sbjct: 461 DMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSG 520

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            + +  + L+ M+   V PD   YNTL+ G+    +++ A +L   ME      DV +Y 
Sbjct: 521 NVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYN 580

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +LING+  +  ++ A  ++ +M +KGI P   TY
Sbjct: 581 MLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 614



 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 184/330 (55%), Gaps = 10/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SF IL G   +    +  L ++K +   G+ PDL +++ LI  F + G++      
Sbjct: 259 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 318

Query: 75  LGRILRSCF--TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           L R +R CF   PD V +T +I G C    + +A  +  ++   GC PDV TY TL+NGL
Sbjct: 319 L-REMR-CFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 376

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+    + A  L  EM     E GV   PD  T++T+  G C EG +DKA +LF  M ++
Sbjct: 377 CKERRLLDAEGLLNEMR----ERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ 430

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PD+VTY +LI G C   D ++A  L+ +M  + + PN VT++++++  C+ G++++A
Sbjct: 431 RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 490

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
              L+ MI  G+ P+   YN+++ G+C +G V++ ++    M  N    D+ +Y  LI+G
Sbjct: 491 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHG 550

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           Y K  ++  A  L + M  + ++P VVTYN
Sbjct: 551 YIKEDKMHDAFKLLNMMEKEKVQPDVVTYN 580



 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 183/360 (50%), Gaps = 41/360 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           + NI+     K   +D V ++   +    +FPD+ T+N++++   + G       ++  +
Sbjct: 158 TLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSM 217

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P  VT+ S++KGLC      +A  +F ++  FG  PDV ++T LI G CR G  
Sbjct: 218 VSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEI 277

Query: 139 IVALNLFEEMANGNGE-------------------------------FGVVCKPDAITYS 167
             AL +++EM +   +                               FG+V  PD + Y+
Sbjct: 278 EEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV--PDGVIYT 335

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENIN----PDVVTYTSLIRGFCYANDWNEAKCLFIE 223
            +  G C+ G +  A    L+++DE +     PDVVTY +L+ G C      +A+ L  E
Sbjct: 336 MVIGGFCRAGLMSDA----LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE 391

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M ++GV P++ TF  +++  C  GK+D+A +L + M+   +RPD   YNTL+DG C  G 
Sbjct: 392 MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 451

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +++A +L+  M S     +  +Y ILI+ +C+  ++E A     EM++KGI P ++TYN+
Sbjct: 452 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 511



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 154/291 (52%), Gaps = 6/291 (2%)

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
           YT NI+++ +CK         V+  + + C  PD VT   ++           A AL   
Sbjct: 157 YTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDS 216

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           + + G KP + TY +++ GLCR+G    A  +F+EM     +FGV   PD  +++ +  G
Sbjct: 217 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM----DDFGVA--PDVRSFTILIGG 270

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            C+ G +++A +++ +M+   I PD+V+++ LI  F      + A     EM   G+ P+
Sbjct: 271 FCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPD 330

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
            V + +++   C+ G M +A R+ + M+  G  PD   YNTL++G C   R+  A+ L  
Sbjct: 331 GVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLN 390

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M   G   D+ ++  LI+GYC   +++ AL L+  ML++ +RP +VTYNT
Sbjct: 391 EMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNT 441



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 124/260 (47%), Gaps = 6/260 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    PP +C+F  L          D  L LF  + +  L PD+ TYN LI+  C+ G 
Sbjct: 392 MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 451

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +   +      P+ VT++ LI   C + ++ +A     ++   G  P++ TY +
Sbjct: 452 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 511

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I G CR+G+        ++M            PD ITY+T+  G  KE  +  A +L  
Sbjct: 512 IIKGYCRSGNVSKGQKFLQKMMVNK------VSPDLITYNTLIHGYIKEDKMHDAFKLLN 565

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M+ E + PDVVTY  LI GF    +  EA  +F +M  +G++P+  T+  ++N     G
Sbjct: 566 MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 625

Query: 248 KMDEASRLLELMIQIGVRPD 267
              EA +L + M+Q G  PD
Sbjct: 626 NSKEAFQLHDEMLQRGFAPD 645



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 91/150 (60%), Gaps = 2/150 (1%)

Query: 195 NPDVVTYT--SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N +V TYT   ++  +C A ++++   +  EM  + V P+VVT NV+++   + G  + A
Sbjct: 151 NSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAA 210

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L++ M+  G++P    YN+++ G C +G  ++A E+F  M+  G   DV S+ ILI G
Sbjct: 211 MALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGG 270

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +C+  EIE AL +Y EM  +GI+P +V+++
Sbjct: 271 FCRVGEIEEALKIYKEMRHRGIKPDLVSFS 300



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 69/161 (42%)

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +E+   +   +  P    +  LIR +  +    EA   F  ++D  V       N ++  
Sbjct: 71  REIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAA 130

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L + G    A+    L+       +    N ++  +C     ++   +   ME      D
Sbjct: 131 LSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPD 190

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V ++ ++++   +  + E A++L   M+SKG++P +VTYN+
Sbjct: 191 VVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNS 231


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 178/335 (53%), Gaps = 10/335 (2%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P   ++  L   L +    D  L L   L S G  PD  TYNIL++   K G+      V
Sbjct: 670  PDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITV 729

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG---CKPDVFTYTTLING 131
            L  ++     PD VT+ +LI  LC    + EA  L   + +     C P+V TY+ LING
Sbjct: 730  LEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLING 789

Query: 132  LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            LC+ G    A  L +EM   + +      P+ ITY++  DGLCK+  + +A EL   ++D
Sbjct: 790  LCKVGRIDEARELIQEMMRKSCDV----LPNIITYNSFLDGLCKQSMMAEACELMRSLRD 845

Query: 192  EN--INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
             +  ++PD VT+++LI G C     +EA  +F +M+  G  PNVVT+NV+MN LCK  KM
Sbjct: 846  GSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKM 905

Query: 250  DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            + A  ++E M+  GV PD   Y+ L+D FC    V+ A EL   M S GC  +V ++  +
Sbjct: 906  ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSI 965

Query: 310  INGYCKNKEIEGALSLYSEM-LSKGIRPTVVTYNT 343
            I+G CK+ +   A  ++ +M L  G+ P  +TY T
Sbjct: 966  IDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCT 1000



 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 188/356 (52%), Gaps = 28/356 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K    +   ++ + +   G+ PD+ TY++L++ FCK  RV     +
Sbjct: 393 PNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALEL 452

Query: 75  L-GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR-AFGCKPDVFTYTTLINGL 132
           L G   R C TP+ VTF S+I GLC   R  EA  +F  +    G  PD  TY TLI+GL
Sbjct: 453 LHGMASRGC-TPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGL 511

Query: 133 CRTGHTIVALNLFEEMA-----------NGNGEFGVVCK--------------PDAITYS 167
            RTG    A  L + M            NG  + G V +              PD +T++
Sbjct: 512 FRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFN 571

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
            +  G CK G  ++A  LF +M  +N+ PDV+T+ +LI G C A     A+ +   M + 
Sbjct: 572 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 631

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           GV PNVVT+N +++ LCK+G+++EA + LE M+  G  PD+  Y +L+   C   R + A
Sbjct: 632 GVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDA 691

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L   ++S G   D  +Y IL++G  K+ + E A+++  EM+ KG  P VVTYNT
Sbjct: 692 LQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNT 747



 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 177/331 (53%), Gaps = 8/331 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFK-RLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V  +NI+   L +       L +F+  +   G+ P + TYN +IN  CK   +  G  + 
Sbjct: 180 VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 239

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             ++     PD VT+ +LI  LC    + EA  L   + +  C P+V TY+ LINGLC+ 
Sbjct: 240 EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKV 299

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN-- 193
           G    A  L +EM   + +      P+ ITY++  DGLCK+    +A EL   ++D +  
Sbjct: 300 GRIDEARELIQEMTRKSCDV----LPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR 355

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           ++PD VT+++LI G C     +EA  +F +M+  G  PNV+T+N ++N LCK  KM+ A 
Sbjct: 356 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 415

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            ++E M+  GV PD   Y+ L+D FC   RV+ A EL   M S GC  +V ++  +I+G 
Sbjct: 416 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 475

Query: 314 CKNKEIEGALSLYSEM-LSKGIRPTVVTYNT 343
           CK+     A  ++ +M L  G+ P  +TY T
Sbjct: 476 CKSDRSGEAFQMFDDMALKHGLVPDKITYCT 506



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 174/335 (51%), Gaps = 9/335 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++N L   L K+   +      + + S G  PD  TY  L+   C+  R      
Sbjct: 634 PPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQ 693

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++  +    + PD VT+  L+ GL    +  +A  +  ++   G  PDV TY TLI+ LC
Sbjct: 694 LVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLC 753

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM--KD 191
           + G    A  L  +M++        C P+ +TYS + +GLCK G +D+A+EL  +M  K 
Sbjct: 754 KAGDLEEARRLHGDMSS---RVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKS 810

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG---VQPNVVTFNVIMNELCKNGK 248
            ++ P+++TY S + G C  +   EA C  +  +  G   V P+ VTF+ +++ LCK G+
Sbjct: 811 CDVLPNIITYNSFLDGLCKQSMMAEA-CELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQ 869

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
            DEA  + + MI  G  P+   YN LM+G C T ++ RA  +  SM   G   DV +Y +
Sbjct: 870 TDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSV 929

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L++ +CK   ++ AL L   M S+G  P VVT+N+
Sbjct: 930 LVDAFCKASHVDEALELLHGMASRGCTPNVVTFNS 964



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 191/363 (52%), Gaps = 42/363 (11%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILINCFCKMGRVSPG 71
            P V ++N L   L K    +    L   ++S       P++ TY++LIN  CK+GR+   
Sbjct: 740  PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEA 799

Query: 72   FVVLGRILR-SC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLR--AFGCKPDVFTYTT 127
              ++  ++R SC   P+ +T+ S + GLC +S + EA  L   LR  +    PD  T++T
Sbjct: 800  RELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFST 859

Query: 128  LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
            LI+GLC+ G T  A N+F++M  G    G V  P+ +TY+ + +GLCK   +++A  +  
Sbjct: 860  LIDGLCKCGQTDEACNVFDDMIAG----GYV--PNVVTYNVLMNGLCKTDKMERAHAMIE 913

Query: 188  KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
             M D+ + PDV+TY+ L+  FC A+  +EA  L   M  +G  PNVVTFN I++ LCK+ 
Sbjct: 914  SMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSD 973

Query: 248  KMDEASRLLELM-IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES---------- 296
            +  EA ++ + M ++ G+ PD   Y TL+DG   TG   +A+ L  +M            
Sbjct: 974  QSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCI 1033

Query: 297  NGCMR------------------DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
            NG  +                  D  ++ ILI G CK    E A +L+ EM++K ++P V
Sbjct: 1034 NGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 1093

Query: 339  VTY 341
            +T+
Sbjct: 1094 MTF 1096



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 186/425 (43%), Gaps = 89/425 (20%)

Query: 1   FCIFDYMLRMHP---------SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD 51
            C  D M R H            P V ++++L     K    D  L L   + S G  P+
Sbjct: 405 LCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPN 464

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           + T+N +I+  CK  R    F +   + L+    PD +T+ +LI GL    R  +A AL 
Sbjct: 465 VVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALL 524

Query: 111 TKLR-----AFGC--------------------------KPDVFTYTTLINGLCRTGHTI 139
             +      AF C                           PD  T+  LI G C+ G+  
Sbjct: 525 DAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFE 584

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  LFEEM   N       +PD +T+  + DGLCK G V+ A+++   M +  + P+VV
Sbjct: 585 QASALFEEMVAKN------LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVV 638

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMM-------------------------DQGVQ---- 230
           TY +L+ G C +    EA C F+E M                         D  +Q    
Sbjct: 639 TYNALVHGLCKSGRIEEA-CQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSE 697

Query: 231 -------PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
                  P+ VT+N++++ L K+G+ ++A  +LE M+  G  PD   YNTL+D  C  G 
Sbjct: 698 LKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGD 757

Query: 284 VNRAKELFVSME---SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG--IRPTV 338
           +  A+ L   M    S  C+ +V +Y +LING CK   I+ A  L  EM+ K   + P +
Sbjct: 758 LEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNI 817

Query: 339 VTYNT 343
           +TYN+
Sbjct: 818 ITYNS 822



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 143/295 (48%), Gaps = 47/295 (15%)

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL-------------------- 128
           +F   +  L       +A  LF       C+P+ FTY+TL                    
Sbjct: 113 SFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRR 172

Query: 129 --------------INGLCRTGHTIVALNLFE-EMANGNGEFGVVCKPDAITYSTITDGL 173
                         +  LCR G T  AL +F  EMA      GV   P  +TY+TI +GL
Sbjct: 173 IRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARD----GVA--PTIVTYNTIINGL 226

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK   +    ELF ++ +   +PDVVTY +LI   C A D  EA+ L  +M  +   PNV
Sbjct: 227 CKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNV 286

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIG--VRPDASVYNTLMDGFCLTGRVNRAKELF 291
           VT++V++N LCK G++DEA  L++ M +    V P+   YN+ +DG C       A EL 
Sbjct: 287 VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM 346

Query: 292 VSMESNGCMR---DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            S+  +G +R   D  ++  LI+G CK  +I+ A S++ +M++ G  P V+TYN 
Sbjct: 347 RSLR-DGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNA 400



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 134/264 (50%), Gaps = 33/264 (12%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P   +F+ L   L K    D   ++F  + + G  P++ TYN+L+N  CK  ++     +
Sbjct: 852  PDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAM 911

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            +  ++    TPD +T++ L+   C  S + EA  L   + + GC P+V T+ ++I+GLC+
Sbjct: 912  IESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 971

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
            +  +  A  +F++M   +G       PD ITY T+ DGL + G+  +A+ L   M D + 
Sbjct: 972  SDQSGEAFQMFDDMTLKHG-----LAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDT 1026

Query: 194  ------IN---------------------PDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
                  IN                     PD VT+  LI G C A ++ +A  LF EM+ 
Sbjct: 1027 YAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVA 1086

Query: 227  QGVQPNVVTFNVIMNELCKNGKMD 250
            + +QP+V+TF  +++ LCK G+++
Sbjct: 1087 KNLQPDVMTFGALIDGLCKAGQVE 1110



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 35/151 (23%)

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL------------- 274
           G +  + +FN  +N L K+G   +A  L    +    RP+   Y+TL             
Sbjct: 106 GFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVER 165

Query: 275 ---------------------MDGFCLTGRVNRAKELFV-SMESNGCMRDVFSYGILING 312
                                +   C  G   RA E+F   M  +G    + +Y  +ING
Sbjct: 166 TLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIING 225

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            CK+ E+   + L+ E++ +G  P VVTYNT
Sbjct: 226 LCKSNELGAGMELFEELVERGHHPDVVTYNT 256


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 184/356 (51%), Gaps = 37/356 (10%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           +L     K K ++    L K       FP+   Y  +IN FCK G+V   F +L  +   
Sbjct: 81  VLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKER 140

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
               D +  ++LI+GLC + RI EA   F  +    C P+V TY T++NGLC+      A
Sbjct: 141 GVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM-GEECSPNVITYNTVVNGLCKANRIDEA 199

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
           L LF++M     E    C+PD I+YST+ D LCK   VDKA E F +M+     P+VVTY
Sbjct: 200 LELFDDMEK-RYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTY 258

Query: 202 TSLIRGFC----------------------------------YANDWNEAKCLFIE-MMD 226
           +SLI G C                                  + ND  E  C F E ++ 
Sbjct: 259 SSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLK 318

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G +PNVVT+NV ++ LCK G++DEA R+L  M++  V PD   Y++++DGFC  GR+++
Sbjct: 319 SGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDK 378

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           A ++F  M  + C+    ++  L++G+ ++K+   A  ++ +M++ G  P + TYN
Sbjct: 379 ADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYN 434



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 164/325 (50%), Gaps = 9/325 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           +  FN +   L KN   +     F+RL   G  P++ TYN+ ++  CK GRV   + +L 
Sbjct: 290 IIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILL 349

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++ S  TPD +T++S+I G C   R+ +A  +FT++    C P   T+ TL++G     
Sbjct: 350 EMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHK 409

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            +  A  + E+M N     G +  P   TY+ + D +C    V+ A E++ KMK +   P
Sbjct: 410 KSREAFRVHEDMVNA----GFI--PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQP 463

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D  TY  LI+  C A   +EAK     M    V PN    + ++  LCK G++DEA  +L
Sbjct: 464 DCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVL 523

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + ++++G +P    +  L++   L  +   A +L   + S G + D  +Y + +   CK 
Sbjct: 524 DNVVEVGCQPLGETFKILVEELYLRKKWEAASKL---LRSPGFVADAATYSLCVAEICKA 580

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
            + + A+ +  +M+ KG+RP   TY
Sbjct: 581 GKPDEAVEVIEQMVLKGVRPDEGTY 605



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 164/344 (47%), Gaps = 10/344 (2%)

Query: 3   IFDYMLRM----HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNIL 58
           +FD M +     H   P V S++ +   L K +  D     FKR+ ++G  P++ TY+ L
Sbjct: 202 LFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSL 261

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           I+  CK+ R S    +L  +    F  + + F +++  L       +A   F +L   G 
Sbjct: 262 IDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGK 321

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           KP+V TY   ++GLC+ G    A  +  EM            PD ITYS+I DG CK G 
Sbjct: 322 KPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESK------VTPDVITYSSIIDGFCKAGR 375

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +DKA ++F +M      P  VT+ +L+ GF       EA  +  +M++ G  P + T+NV
Sbjct: 376 MDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNV 435

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +M+ +C    ++ A  +   M +   +PD + Y  L+   C   RV+ AKE    ME++ 
Sbjct: 436 LMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADN 495

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            + +      L+   CK  E++ A S+   ++  G +P   T+ 
Sbjct: 496 VVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFK 539



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 159/350 (45%), Gaps = 35/350 (10%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           + L   L +    D  L  FK +      P++ TYN ++N  CK  R+     +   + +
Sbjct: 150 STLIQGLCRKGRIDEALEQFKSMGE-ECSPNVITYNTVVNGLCKANRIDEALELFDDMEK 208

Query: 81  SCFT-----PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
                    PD ++++++I  LC   R+ +A   F ++RA GC P+V TY++LI+GLC+ 
Sbjct: 209 RYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKV 268

Query: 136 ------------------GHTIVALNLFEEMANGNGEFGVVC-----------KPDAITY 166
                             G  I+  N        N E    C           KP+ +TY
Sbjct: 269 DRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTY 328

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +    GLCK G VD+A  + L+M +  + PDV+TY+S+I GFC A   ++A  +F  MM 
Sbjct: 329 NVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMV 388

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
               P+ VTF  +++   ++ K  EA R+ E M+  G  P    YN LMD  C    V  
Sbjct: 389 HECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVES 448

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           A E++  M+      D  +Y  LI   C+ + ++ A      M +  + P
Sbjct: 449 ALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVP 498



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 155/374 (41%), Gaps = 38/374 (10%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C F   L      P V ++N+    L K    D    +   +    + PD+ TY+ +I+ 
Sbjct: 310 CQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDG 369

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FCK GR+     V  R++     P  VTF +L+ G     +  EA  +   +   G  P 
Sbjct: 370 FCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPG 429

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY  L++ +C       AL ++ +M     +      PD  TY+ +   LC+   VD+
Sbjct: 430 LQTYNVLMDCVCGADSVESALEIYHKMKRKKRQ------PDCNTYAPLIQCLCRARRVDE 483

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AKE    M+ +N+ P+     +L+   C   + +EA  +   +++ G QP   TF +++ 
Sbjct: 484 AKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVE 543

Query: 242 EL--------------------------------CKNGKMDEASRLLELMIQIGVRPDAS 269
           EL                                CK GK DEA  ++E M+  GVRPD  
Sbjct: 544 ELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEG 603

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y  ++   C   RV  A   F  M S GC   + +Y +LI   C     + A  ++  M
Sbjct: 604 TYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAM 663

Query: 330 LSKGIRPTVVTYNT 343
           ++ G  P   T  T
Sbjct: 664 VAAGFTPQAQTMRT 677



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 124/304 (40%), Gaps = 39/304 (12%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+     P PV    +L G  +++K       + + + + G  P L TYN+L++C 
Sbjct: 382 VFTRMMVHECIPHPVTFMTLLHG-FSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 440

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C    V     +  ++ R    PD  T+  LI+ LC   R+ EA      + A    P+ 
Sbjct: 441 CGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 500

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP--------------------- 161
                L+  LC+ G    A ++ + +        V C+P                     
Sbjct: 501 AICHALVEVLCKQGEVDEACSVLDNVVE------VGCQPLGETFKILVEELYLRKKWEAA 554

Query: 162 -----------DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
                      DA TYS     +CK G  D+A E+  +M  + + PD  TY +++R  C 
Sbjct: 555 SKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCG 614

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
            +    A   F +M  +G  P +VT+ +++ E C     DEA R+ E M+  G  P A  
Sbjct: 615 LDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQT 674

Query: 271 YNTL 274
             TL
Sbjct: 675 MRTL 678



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 6/149 (4%)

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T   L+  F  A    EA  L  E ++    PN + +  ++N  CK G++D+A  LL+ M
Sbjct: 78  TCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEM 137

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + GV+ D  +++TL+ G C  GR++ A E F SM    C  +V +Y  ++NG CK   I
Sbjct: 138 KERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM-GEECSPNVITYNTVVNGLCKANRI 196

Query: 320 EGALSLYSEM-----LSKGIRPTVVTYNT 343
           + AL L+ +M      S G  P V++Y+T
Sbjct: 197 DEALELFDDMEKRYEASHGCEPDVISYST 225



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 105/268 (39%), Gaps = 38/268 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N+L  C+      ++ L ++ ++      PD  TY  LI C C+  RV      
Sbjct: 428 PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEF 487

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP-------------- 120
           L  +      P+     +L++ LC +  + EA ++   +   GC+P              
Sbjct: 488 LDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYL 547

Query: 121 ------------------DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
                             D  TY+  +  +C+ G    A+ + E+M       GV  +PD
Sbjct: 548 RKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLK----GV--RPD 601

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
             TY  +   LC    V+ A   F KM      P +VTYT LI   C A+  +EA  +F 
Sbjct: 602 EGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFE 661

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            M+  G  P   T   + + L   G  D
Sbjct: 662 AMVAAGFTPQAQTMRTLSSCLRDAGYQD 689



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G Q N  T  V++N   K  + +EA RLL+  ++    P+  +Y T+++GFC  G+V++A
Sbjct: 71  GFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQA 130

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            EL   M+  G   DV  +  LI G C+   I+ AL  +  M  +   P V+TYNT
Sbjct: 131 FELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM-GEECSPNVITYNT 185


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 187/340 (55%), Gaps = 15/340 (4%)

Query: 8   LRMHPSPPPVCSFNILF------GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +++    P V ++N L       G + K    D +L   K + + G+ P+  TYNILI+ 
Sbjct: 181 MKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAIL---KEMVAKGICPNEVTYNILIDG 237

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FCK   VS    V G + R    P+ VT+  LI GLC++ ++ EA AL  ++ +   +P+
Sbjct: 238 FCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPN 297

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V T+  LING C+      A+NLF +M     + GV   P+A+TY+T+ D  CK+G ++ 
Sbjct: 298 VVTHNVLINGFCKNKTVNEAINLFNDME----KQGV--DPNAMTYTTLIDAYCKDGRMED 351

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L+  M D  I P+V TY  LI G C   D   A+ L  EM+ + +  +VVT+N++++
Sbjct: 352 AFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILID 411

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G+  +A +LL+ M + G+ P    YNTLMDG+C  G +  A  +   ME  G   
Sbjct: 412 SLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQA 471

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +V ++ +LI G+C    +E A  L +EML +G+ P   TY
Sbjct: 472 NVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTY 511



 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 177/328 (53%), Gaps = 9/328 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S N L   L K      +  +++ +    +  ++ ++NI++N  CK+G+++    V+  +
Sbjct: 122 SCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDM 181

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRI---MEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
                +P+ +T+ +LI G C   RI    +A A+  ++ A G  P+  TY  LI+G C+ 
Sbjct: 182 KVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKD 241

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
            +   A+ +F EM           +P+ +TY+ + +GLC +G VD+A  L  +M   ++ 
Sbjct: 242 ENVSGAMRVFGEMQRQG------LRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLE 295

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+VVT+  LI GFC     NEA  LF +M  QGV PN +T+  +++  CK+G+M++A  L
Sbjct: 296 PNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFAL 355

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
             +MI  G+ P+ S YN L+ G C  G V  A+ L   M S     DV +Y ILI+  CK
Sbjct: 356 YNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCK 415

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             E   A+ L  EM  KG+ P+ VTYNT
Sbjct: 416 KGESRKAVKLLDEMFEKGLNPSHVTYNT 443



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 159/290 (54%), Gaps = 9/290 (3%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
           ++L+  F +  ++  GF    R     F    ++   L+ GL  ES   +   ++ ++  
Sbjct: 89  DMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIK 148

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
              + +V ++  ++NGLC+ G    A ++ E+M      +GV   P+ ITY+T+ DG CK
Sbjct: 149 RKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMK----VWGV--SPNVITYNTLIDGYCK 202

Query: 176 EGFVD---KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            G +    KA  +  +M  + I P+ VTY  LI GFC   + + A  +F EM  QG++PN
Sbjct: 203 MGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPN 262

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           VVT+N+++N LC +GK+DEA  L + M+   + P+   +N L++GFC    VN A  LF 
Sbjct: 263 VVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFN 322

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ME  G   +  +Y  LI+ YCK+  +E A +LY+ M+ +GI P V TYN
Sbjct: 323 DMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYN 372


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 179/331 (54%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P   ++N++   L K +       + K + +   + PDL TY+ +IN FCK G +     
Sbjct: 39  PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 98

Query: 74  VLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           +L  ++ R    PD VT+TS++ GLC + ++  A  +  +++  G +PD FT++ LI G 
Sbjct: 99  ILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 158

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C       AL L++E+   +       KPD +TY+ + DG CK G ++KA ++   M+  
Sbjct: 159 CNARKVDEALKLYKEILTSSS-----WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGR 213

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              P+VVTY+SL+ G C A D ++A  LF  M  +G  PNVVT+  +++ LC   K+D A
Sbjct: 214 KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 273

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L++ M      PD   YN L+DG+C  GR+  AK+LF  M +  C+ D  +Y  L+ G
Sbjct: 274 RLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRG 333

Query: 313 YCKNKEIEGALSLYSEM-LSKGIRPTVVTYN 342
           +C    +E A  L   M  + GI P VVTY+
Sbjct: 334 FCNASRLEEARFLLENMKTAAGIDPDVVTYS 364



 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 182/338 (53%), Gaps = 8/338 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKR-LNSIGLFPDLYTYNILINCFCKMG 66
           +++    P   +F+ L       +  D  L L+K  L S    PD+ TY  LI+ FCK G
Sbjct: 139 MKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSG 198

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     +LG +      P+ VT++SL+ GLC    + +A  LF ++ + GC P+V TYT
Sbjct: 199 NLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYT 258

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLI+GLC       A  L +EM          C PD ++Y+ + DG C+ G +++AK+LF
Sbjct: 259 TLIHGLCAAHKVDAARLLMDEMT------ATCCPPDTVSYNALLDGYCRLGRIEEAKQLF 312

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCK 245
            +M  ++  PD +TYT L+RGFC A+   EA+ L   M    G+ P+VVT+++++    +
Sbjct: 313 KEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSR 372

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
             +  EA+  ++ MI   V P+A  Y++L+DG C  GRV+ A E+  +M +      V +
Sbjct: 373 AKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGT 432

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  +I   C+  +++ A  L   M + G+ P +VTY T
Sbjct: 433 FNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTT 470



 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 163/330 (49%), Gaps = 12/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K    D  L LF+R+ S G  P++ TY  LI+  C   +V    ++
Sbjct: 217 PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 276

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  +C  PD V++ +L+ G C   RI EA  LF ++    C PD  TYT L+ G C 
Sbjct: 277 MDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCN 336

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L E M    G       PD +TYS +  G  +     +A E   +M   N+
Sbjct: 337 ASRLEEARFLLENMKTAAG-----IDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNV 391

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY+SLI G C A   + A  +   M+++ V+P+V TFN ++  LC+ G MDEA +
Sbjct: 392 APNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWK 451

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF-------SYG 307
           LL  M   G+ P    Y TL++GF  TGR+  A ELF  M                 ++ 
Sbjct: 452 LLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFS 511

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            LI G CK +EI+ A+++  E+ S+   P 
Sbjct: 512 ALIRGLCKAREIDKAMAVVEELRSRECEPA 541



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/261 (37%), Positives = 150/261 (57%), Gaps = 8/261 (3%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
           P  VT+T +I G C  +++ +A A F K+R F   P+  TY  ++NGLC+   T  A  +
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEV 63

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTS 203
            +EM +G         PD +TYST+ +G CK+G +D+A E+  +M   + I PDVVTYTS
Sbjct: 64  LKEMRDGKS-----VAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTS 118

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL-ELMIQI 262
           ++ G C     + A  +  EM  +GV+P+  TF+ ++   C   K+DEA +L  E++   
Sbjct: 119 VVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSS 178

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
             +PD   Y  L+DGFC +G + +A ++   ME   C+ +V +Y  L++G CK  +++ A
Sbjct: 179 SWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA 238

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           L L+  M SKG  P VVTY T
Sbjct: 239 LDLFRRMTSKGCVPNVVTYTT 259



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 168/328 (51%), Gaps = 7/328 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++  +L      P V ++  L     K+ + +  + +   +      P++ TY+ L++  
Sbjct: 170 LYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGL 229

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     +  R+      P+ VT+T+LI GLCA  ++  A  L  ++ A  C PD 
Sbjct: 230 CKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDT 289

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y  L++G CR G    A  LF+EMA  +      C PD ITY+ +  G C    +++A
Sbjct: 290 VSYNALLDGYCRLGRIEEAKQLFKEMATKS------CLPDRITYTCLVRGFCNASRLEEA 343

Query: 183 KELFLKMKD-ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           + L   MK    I+PDVVTY+ ++ G+  A  + EA     EM+ + V PN VT++ +++
Sbjct: 344 RFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLID 403

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G++D A  +L+ M+   V P    +N+++   C  G ++ A +L V+M ++G   
Sbjct: 404 GLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEP 463

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEM 329
            + +Y  L+ G+ +   +E A  L+  M
Sbjct: 464 GMVTYTTLLEGFSRTGRMEIAYELFEVM 491



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 11/145 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN + G L +    D    L   + + GL P + TY  L+  F + GR+   + +
Sbjct: 428 PSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYEL 487

Query: 75  LGRILRSC---------FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
              ++R             P+   F++LI+GLC    I +A A+  +LR+  C+P     
Sbjct: 488 F-EVMRKKAKKSSSAANLVPEQ-AFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDC 545

Query: 126 TTLINGLCRTGHTIVALNLFEEMAN 150
             +++GL R G T  A  L   ++ 
Sbjct: 546 LAIVDGLLRAGRTEEAGKLINSISK 570


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 176/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   + N L   LA++++Y    S+++R+  + + P   + + LI CF    +   GF V
Sbjct: 72  PSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGV 131

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +G +L+  FT +      ++KGLC    + EA  L  ++      PD+ +Y TLINGLC+
Sbjct: 132 VGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCK 191

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ L  EM          C P+++T +T+ DGLCK+G +D+A EL   MK +  
Sbjct: 192 AKKLKEAVGLLLEMEAAG------CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGF 245

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + DVV Y +LI GFC   + +  K LF EM+ +G+  NVVT++ +++ LC+ G+  EA+ 
Sbjct: 246 DADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANT 305

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  M + G+ PD   Y  L+DG C  GR   A +L   M   G      +Y +L++G C
Sbjct: 306 VLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLC 365

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +  A  +   M+ KG +  VVTYNT
Sbjct: 366 KEGLVIDAFKILRMMIEKGKKADVVTYNT 394



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 161/335 (48%), Gaps = 8/335 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V ++  L   L K+      + L   +   G  P   TYN+L++  CK G V  
Sbjct: 313 HGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVID 372

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTL 128
            F +L  ++      D VT+ +L+KGLC + ++ EA  LF  +       +P+VFT+  L
Sbjct: 373 AFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNML 432

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I GLC+ G    A+ +  +M    G  G     + +TY+ +  G  K G + +A EL+ +
Sbjct: 433 IGGLCKEGRLTKAVKIHRKMVK-KGSCG-----NLVTYNMLLGGCLKAGKIKEAMELWKQ 486

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           + D    P+  TY+ LI GFC     N AK LF EM   G+ P +  +N +M  LCK G 
Sbjct: 487 VLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGS 546

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +++A  L + M      PD   +NT++DG    G     KEL + M   G   D  ++  
Sbjct: 547 LEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFST 606

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LIN   K  E++ A S    M++ G  P  + Y++
Sbjct: 607 LINRLSKLGELDEAKSALERMVASGFTPDALVYDS 641



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 151/288 (52%), Gaps = 8/288 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRL--NSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           V ++N L   L      D  L LF  +  N   L P+++T+N+LI   CK GR++    +
Sbjct: 389 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 448

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++++     + VT+  L+ G     +I EA  L+ ++   G  P+ FTY+ LI+G C+
Sbjct: 449 HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCK 508

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                +A  LF EM            P    Y+T+   LCKEG +++AK LF +M + N 
Sbjct: 509 MRMLNIAKGLFCEMRTHG------LNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANC 562

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++++ ++I G   A D+   K L ++M++ G++P+ +TF+ ++N L K G++DEA  
Sbjct: 563 EPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKS 622

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            LE M+  G  PDA VY++L+ G    G       L   M + G + D
Sbjct: 623 ALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLD 670



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 131/265 (49%), Gaps = 6/265 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN+L G L K       + + +++   G   +L TYN+L+    K G++     +
Sbjct: 424 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 483

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L   F P++ T++ LI G C    +  A  LF ++R  G  P +F Y TL+  LC+
Sbjct: 484 WKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK 543

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +LF+EM N N      C+PD I+++T+ DG  K G     KEL +KM +  +
Sbjct: 544 EGSLEQAKSLFQEMGNAN------CEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGL 597

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +T+++LI       + +EAK     M+  G  P+ + ++ ++  L   G   E   
Sbjct: 598 RPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIIN 657

Query: 255 LLELMIQIGVRPDASVYNTLMDGFC 279
           LL  M   G   D  + +T++   C
Sbjct: 658 LLHQMAAKGTVLDRKIVSTILTCLC 682



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R H   P +  +N L   L K    +   SLF+ + +    PD+ ++N +I+   K G 
Sbjct: 522 MRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGD 581

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 +  +++     PDA+TF++LI  L     + EA +   ++ A G  PD   Y +
Sbjct: 582 FQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDS 641

Query: 128 LINGLCRTGHTIVALNLFEEMA 149
           L+ GL   G T   +NL  +MA
Sbjct: 642 LLKGLSSKGDTTEIINLLHQMA 663



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + SFN +     K   +  V  L  ++  +GL PD  T++ LIN   K+G +      
Sbjct: 564 PDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSA 623

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R++ S FTPDA+ + SL+KGL ++    E   L  ++ A G   D    +T++  LC 
Sbjct: 624 LERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCH 683

Query: 135 TGHTIVALNLFEEMANGNGE 154
           +   +  + L      G  E
Sbjct: 684 SIQEVDVMELLPTFFQGTSE 703



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 70/163 (42%)

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  LF    D N+ P   T   L+     + ++  A  ++  M    V P+  + + ++
Sbjct: 57  EAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALI 116

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
                  K      ++ L+++ G   +  + N ++ G C  G V  A  L   M      
Sbjct: 117 ECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVS 176

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D+ SY  LING CK K+++ A+ L  EM + G  P  VT  T
Sbjct: 177 PDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTT 219


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 191/366 (52%), Gaps = 35/366 (9%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R+H +   + +FNI    L +    +      + + + G+ P++ TYN L++ +CK G  
Sbjct: 195 RIHTN---LNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSA 251

Query: 69  SPGF---VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
              +     +  +L +   P+ VTF +LI G C +  +  A   F +++  G KP++ TY
Sbjct: 252 GKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTY 311

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVV---------CK---------------- 160
            +LINGLC  G    A++L+++M     +  +V         CK                
Sbjct: 312 NSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSK 371

Query: 161 ----PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
               P+ IT++T+ D  CKEG +++   L   M DE I P+V TY  LI G C   D   
Sbjct: 372 QELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQA 431

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           AK L  EM ++G++ +VVT+N++++ LCKN K   A +LL  M  +G++P+   YNTLMD
Sbjct: 432 AKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMD 491

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G+C+ G++  A  +   ME      +V +Y +LI GYCK  ++E A  L +EML KG+ P
Sbjct: 492 GYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNP 551

Query: 337 TVVTYN 342
              TY+
Sbjct: 552 NRTTYD 557



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 176/330 (53%), Gaps = 9/330 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + S N L   L K      V  ++K +    +  +L T+NI IN  C+ G+++     + 
Sbjct: 165 LTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIE 224

Query: 77  RILRSCFTPDAVTFTSLIKGLC---AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
            +     +P+ VT+ +L+ G C   +  ++ +A A   ++ A    P+  T+ TLI+G C
Sbjct: 225 DMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFC 284

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +  +   A   FEEM           KP+ +TY+++ +GLC  G +++A +L+ KM    
Sbjct: 285 KDENVAAAKKAFEEMQKQG------LKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLG 338

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P++VTY +LI GFC      EA  +F ++  Q + PNV+TFN +++  CK G M+E  
Sbjct: 339 LKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGF 398

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   M+  G+ P+ S YN L+ G C    +  AKEL   ME+ G   DV +Y ILI+G 
Sbjct: 399 SLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGL 458

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CKN +   A  L +EM + G++P  VTYNT
Sbjct: 459 CKNDKSRNAEKLLNEMFNLGLKPNHVTYNT 488



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 153/324 (47%), Gaps = 22/324 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L     K+++       F+ +   GL P++ TYN LIN  C  G++     +
Sbjct: 271 PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDL 330

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+ VT+ +LI G C +  + EA  +F  +      P+V T+ T+I+  C+
Sbjct: 331 WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G      +L   M +     G++  P+  TY+ +  GLC++  +  AKEL  +M+++ +
Sbjct: 391 EGMMEEGFSLCSSMLDE----GIL--PNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGL 444

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             DVVTY  LI G C  +    A+ L  EM + G++PN VT+N +M+  C  GK+  A  
Sbjct: 445 KGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALN 504

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M +   +P+   YN L+ G+C   ++  A  L   M   G   +  +Y I      
Sbjct: 505 VRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDI------ 558

Query: 315 KNKEIEGALSLYSEMLSKGIRPTV 338
                     +  EML KG  P +
Sbjct: 559 ----------VRLEMLEKGFSPDI 572



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 3/165 (1%)

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A E F + KD      + +   L+      N   + + ++ EM+ + +  N+ TFN+ +N
Sbjct: 149 AYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFIN 208

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL---TGRVNRAKELFVSMESNG 298
            LC+ GK+++A   +E M   G+ P+   YNTL+DG+C     G++ +A+     M +N 
Sbjct: 209 GLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANK 268

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +  ++  LI+G+CK++ +  A   + EM  +G++P +VTYN+
Sbjct: 269 ICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNS 313


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 178/346 (51%), Gaps = 10/346 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + +  +R    P  V ++N+    L K +  D    L K+++     P   TY  L++
Sbjct: 27  FSVLERAVRAGCEPDYV-TYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVD 85

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K GR+     VL +++    +P   T+T +I GL    R+ EA  +F  +   GC+P
Sbjct: 86  GLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRP 145

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D F YT LI GLC++G    A  L++E AN          PD +TY+++ DGLCK G + 
Sbjct: 146 DAFVYTALIKGLCKSGKPEEAYALYKE-ANARKHHATAV-PDVVTYTSLIDGLCKAGRIL 203

Query: 181 KAKELFLKMKDENIN----PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           +A+++F    DE +     PD VTYTS+I G C      E    F EM ++G +P+ VT+
Sbjct: 204 EARQVF---DDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTY 260

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++   K   + +A R+   M+Q G       YN ++DG C  GRV  A   F++ME 
Sbjct: 261 AALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEE 320

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            GC+  V +Y  L++G+C    +  A+ L+  ML +G  P +V+YN
Sbjct: 321 RGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYN 366



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 178/333 (53%), Gaps = 9/333 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   L K    D  +++ +++   G  P L TY ++I+   K GRV     +
Sbjct: 75  PTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRI 134

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA----FGCKPDVFTYTTLIN 130
              +L +   PDA  +T+LIKGLC   +  EA AL+ +  A        PDV TYT+LI+
Sbjct: 135 FVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLID 194

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLC+ G  + A  +F++ A   G       PDA+TY++I DGLCK G V++  E F +M+
Sbjct: 195 GLCKAGRILEARQVFDDEAVERGFI-----PDAVTYTSIIDGLCKLGRVEEGCERFHEMR 249

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           +    PD VTY +LI GF  A    +A  ++ +M+  G   + VT+N+I++ LCK G++ 
Sbjct: 250 NRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVA 309

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA      M + G       Y+ LMDGFC  G V+ A ELF  M   GC  ++ SY I+I
Sbjct: 310 EAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIII 369

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G C+  ++  A   + ++L + + P V T+N 
Sbjct: 370 RGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNA 402



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 177/335 (52%), Gaps = 12/335 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNS----IGLFPDLYTYNILINCFCKMGRVSP 70
           P    +  L   L K+   +   +L+K  N+        PD+ TY  LI+  CK GR+  
Sbjct: 145 PDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILE 204

Query: 71  GFVVLG-RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
              V     +   F PDAVT+TS+I GLC   R+ E    F ++R  G +PD  TY  LI
Sbjct: 205 ARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 264

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           +G  +      A  ++ +M       G V     +TY+ I DGLCK G V +A   FL M
Sbjct: 265 DGFMKAKMIPKAHRVYRQMLQS----GTVVS--TVTYNIILDGLCKAGRVAEAYATFLAM 318

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           ++      VVTY++L+ GFC   + + A  LF  M+D+G +PN+V++N+I+  LC+ GK+
Sbjct: 319 EERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKL 378

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLT-GRVNRAKELFVSMESNGCMRDVFSYGI 308
            +A    E ++Q  + PD   +N  + G C     V+   ELF SM S G   ++ SY I
Sbjct: 379 AKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSI 438

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L++G C+   +E AL ++ EM+S+G+ P VV +NT
Sbjct: 439 LMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNT 473



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 160/323 (49%), Gaps = 8/323 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  +   L K    +     F  + + G  PD  TY  LI+ F K   +     V
Sbjct: 220 PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRV 279

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L+S      VT+  ++ GLC   R+ EA A F  +   GC   V TY+ L++G C 
Sbjct: 280 YRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCS 339

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+ LF  M +        C+P+ ++Y+ I  GLC+ G + KA   F K+    +
Sbjct: 340 EGNVSAAVELFRRMLDRG------CEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRL 393

Query: 195 NPDVVTYTSLIRGFCYANDW-NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            PDV T+ + + G C   D  ++   LF  M+ QG  PN+ +++++M+ +C+ G ++ A 
Sbjct: 394 CPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVAL 453

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +   M+  GV PD  V+NTL+   C+ GRV+ A E+F  +E      D +SY  L++G 
Sbjct: 454 EIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAP-DAWSYWSLLDGL 512

Query: 314 CKNKEIEGALSLYSEMLSKGIRP 336
            + + +E A  L   M  +G  P
Sbjct: 513 SRCERMEEARLLSFHMKLQGCAP 535



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 4/189 (2%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C PD + ++ + +GLC+E  +D+A  +  +       PD VTY   I G C A   ++A 
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M ++   P  VT+  +++ L K G++DEA  +LE M++ G  P    Y  ++DG 
Sbjct: 63  QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR--- 335
              GRV  A+ +FV M  NGC  D F Y  LI G CK+ + E A +LY E  ++      
Sbjct: 123 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATA 182

Query: 336 -PTVVTYNT 343
            P VVTY +
Sbjct: 183 VPDVVTYTS 191



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M+    SP  + S++IL   + +    +  L +F+ + S G+ PD+  +N LI   
Sbjct: 420 LFESMVSQGTSPN-LHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWL 478

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GRV     V   + R    PDA ++ SL+ GL    R+ EA  L   ++  GC P  
Sbjct: 479 CIAGRVDEALEVFRELERRS-APDAWSYWSLLDGLSRCERMEEARLLSFHMKLQGCAPRH 537

Query: 123 FTYT 126
           +  T
Sbjct: 538 YDLT 541


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 185/333 (55%), Gaps = 6/333 (1%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H       ++N L     K  +    L++++ +   GL PD YT+N+L+N F K  RV  
Sbjct: 83  HRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDS 142

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            + +   +     +P+ +T++ LI  +C    + +A  +F  +++ GC+P++FTYT++I+
Sbjct: 143 VWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMID 202

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GL ++GH   A  LFEEM +     G+V     + Y+++  GL + G  D A +LF +M 
Sbjct: 203 GLGKSGHVDKAFFLFEEMTSE----GLVATR--VVYNSLIHGLGRSGRADAAAKLFREML 256

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            + + PD VT+TSL+ G   A   +EA+ +F E  D G   +V  +NV+++ LCK+ ++D
Sbjct: 257 SKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLD 316

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA  +   + + G+ PD   +N LMDG C +GR++ A  L   M+  GC  DV  Y  LI
Sbjct: 317 EAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLI 376

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G  K+  +E A  L  EM S G  P VVTYNT
Sbjct: 377 DGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNT 409



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 155/302 (51%), Gaps = 11/302 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  +   L K+ H D    LF+ + S GL      YN LI+   + GR      +
Sbjct: 192 PNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKL 251

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     PD VTFTSL+ GL    R  EA  +F + R  GC  DV  Y  LI+ LC+
Sbjct: 252 FREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCK 311

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A  +F E+     E G+V  PD  T++ + DGLCK G +  A  L   MK    
Sbjct: 312 SKRLDEAWEIFGELE----EDGLV--PDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGC 365

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV  Y +LI G   +    EA  L +EM   G +P+VVT+N +++E CK G++++A R
Sbjct: 366 TPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALR 425

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES---NGCMR-DVFSYGILI 310
           L E +   G   +   YNT+++G C+ GRV+ A +LF  M+    +G +  D  +Y  L+
Sbjct: 426 LFEEISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLL 484

Query: 311 NG 312
           NG
Sbjct: 485 NG 486



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%)

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
           G  C   A  Y+++ D   K G+  KA  ++  M    + PD  T+  L+  F  A   +
Sbjct: 82  GHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVD 141

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
               LF EM +Q   PNV+T++++++ +CK G +++A ++   M   G RP+   Y +++
Sbjct: 142 SVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMI 201

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           DG   +G V++A  LF  M S G +     Y  LI+G  ++   + A  L+ EMLSKG++
Sbjct: 202 DGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQ 261

Query: 336 PTVVTYNT 343
           P  VT+ +
Sbjct: 262 PDHVTFTS 269


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1164

 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 180/328 (54%), Gaps = 7/328 (2%)

Query: 17  VCSFNILFGCLAKN-KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V S N+    L+K+     T + +F+    +G+  ++ +YNI+I+  C++GR++    +L
Sbjct: 633 VDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLL 692

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             +    +TPD ++++++I G C    + +   L  K++  G KP+ +TY ++I  LCR 
Sbjct: 693 LLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRI 752

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A   F EM       G    PD I Y+T+ DG CK G +  A + F +M   +I 
Sbjct: 753 CKLAEAEEAFSEM------IGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDIT 806

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PDV+TYT++I GFC   D  EA  LF EM+ +G++P+++TF  +MN  CK G + +A R+
Sbjct: 807 PDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRV 866

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              MIQ G  P+   Y TL+DG C  G ++ A EL   M   G   ++F+Y  ++NG CK
Sbjct: 867 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 926

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  IE A+ L  E  + G+    VTY T
Sbjct: 927 SGNIEEAVKLVGEFEAAGLNADTVTYTT 954



 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 174/331 (52%), Gaps = 12/331 (3%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V S++ +     +    D V  L +++   GL P+ YTY  +I   C++ +++     
Sbjct: 702  PDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEA 761

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               ++     PD + +T+L+ G C    I  A+  F ++ +    PDV TYT +I+G C+
Sbjct: 762  FSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 821

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
             G  + A  LF EM         +C+   PD IT++ + +G CK G +  A  +   M  
Sbjct: 822  IGDMVEAGKLFHEM---------LCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQ 872

Query: 192  ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               +P+VVTYT+LI G C   D + A  L  EM   G+QPN+ T+N I+N LCK+G ++E
Sbjct: 873  AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEE 932

Query: 252  ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
            A +L+      G+  D   Y TLMD +C +G +++A+E+   M   G    + ++ +L+N
Sbjct: 933  AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMN 992

Query: 312  GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G+C +  +E    L + ML+KGI P   T+N
Sbjct: 993  GFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 1023



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 160/303 (52%), Gaps = 6/303 (1%)

Query: 40   FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
            F  +   G+ PD   Y  L++ FCK G +         +     TPD +T+T++I G C 
Sbjct: 762  FSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 821

Query: 100  ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
               ++EA  LF ++   G +PD+ T+T L+NG C+ GH   A  +   M          C
Sbjct: 822  IGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAG------C 875

Query: 160  KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
             P+ +TY+T+ DGLCKEG +D A EL  +M    + P++ TY S++ G C + +  EA  
Sbjct: 876  SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 935

Query: 220  LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            L  E    G+  + VT+  +M+  CK+G+MD+A  +L  M+  G++P    +N LM+GFC
Sbjct: 936  LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFC 995

Query: 280  LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            L G +   ++L   M + G   +  ++  L+  YC    ++ A ++Y +M S+G+ P   
Sbjct: 996  LHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGK 1055

Query: 340  TYN 342
            TY 
Sbjct: 1056 TYE 1058



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 176/328 (53%), Gaps = 6/328 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P    +  L     K          F  ++S  + PD+ TY  +I+ FC++G +     +
Sbjct: 772  PDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 831

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               +L     PD +TFT L+ G C    I +A  +   +   GC P+V TYTTLI+GLC+
Sbjct: 832  FHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 891

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G    A  L  EM      + +  +P+  TY++I +GLCK G +++A +L  + +   +
Sbjct: 892  EGDLDSANELLHEM------WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 945

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            N D VTYT+L+  +C + + ++A+ +  EM+ +G+QP +VTFNV+MN  C +G +++  +
Sbjct: 946  NADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 1005

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            LL  M+  G+ P+A+ +N L+  +C+   +  A  ++  M S G   D  +Y  L+ G+C
Sbjct: 1006 LLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHC 1065

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              + ++ A  L+ EM  KG   +V TY+
Sbjct: 1066 NARNMKEAWFLFQEMKGKGFSVSVSTYS 1093



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 156/297 (52%), Gaps = 8/297 (2%)

Query: 39   LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
            LF  +   GL PD+ T+  L+N +CK G +   F V   ++++  +P+ VT+T+LI GLC
Sbjct: 831  LFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 890

Query: 99   AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             E  +  A  L  ++   G +P++FTY +++NGLC++G+        EE     GEF   
Sbjct: 891  KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN-------IEEAVKLVGEFEAA 943

Query: 159  -CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
                D +TY+T+ D  CK G +DKA+E+  +M  + + P +VT+  L+ GFC      + 
Sbjct: 944  GLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDG 1003

Query: 218  KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
            + L   M+ +G+ PN  TFN ++ + C    +  A+ + + M   GV PD   Y  L+ G
Sbjct: 1004 EKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKG 1063

Query: 278  FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
             C    +  A  LF  M+  G    V +Y +LI G+ K K+   A  ++ +M   G+
Sbjct: 1064 HCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGL 1120


>gi|224128023|ref|XP_002329235.1| predicted protein [Populus trichocarpa]
 gi|222871016|gb|EEF08147.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 184/332 (55%), Gaps = 15/332 (4%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F++ML   P P  +    +L   +   ++YD V+SL + +   GL P+ YT NILINCFC
Sbjct: 72  FNHMLHRKPLPCIIQFTKLLSAIVKMRQYYDAVISLSRPMELAGLSPNTYTLNILINCFC 131

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K+  V  GF VL ++++    PD V FT+LI GLC   +  +A  LF +    G      
Sbjct: 132 KLQHVDLGFSVLAKVIKLGLQPDVVPFTTLINGLCKVGKFSQAVELFDETVERG------ 185

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            Y +LI+GLC       A  +  EM + N        PD +T++ + D  CKEG V +A+
Sbjct: 186 -YNSLIHGLCNCSQWKEASAILNEMTSLN------IMPDIVTFNVLVDTFCKEGKVSEAQ 238

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +   M + ++  DVVTY SL+ G     +  EA+ LF  M+ +G +PNV ++N+++N  
Sbjct: 239 GVLKTMTEMSVELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSYNILINGY 298

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK   +DEA +L   MI  G+ P+   YNT   GFC  G++  A+EL  +M +NG + D+
Sbjct: 299 CKAEMIDEAKQLFNEMIHQGLTPNIVSYNT--HGFCQLGKLREAQELNENMHTNGNLPDL 356

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            +Y IL++G+CK      A  L+SE+  +G++
Sbjct: 357 CTYSILLDGFCKQGNHIAARKLFSELFVQGLQ 388



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 144/260 (55%), Gaps = 14/260 (5%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAA-ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
           P  + FT L+  +    +  +A  +L   +   G  P+ +T   LIN  C+  H  +  +
Sbjct: 82  PCIIQFTKLLSAIVKMRQYYDAVISLSRPMELAGLSPNTYTLNILINCFCKLQHVDLGFS 141

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           +  ++     + G+  +PD + ++T+ +GLCK G   +A ELF    DE +      Y S
Sbjct: 142 VLAKVI----KLGL--QPDVVPFTTLINGLCKVGKFSQAVELF----DETVERG---YNS 188

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           LI G C  + W EA  +  EM    + P++VTFNV+++  CK GK+ EA  +L+ M ++ 
Sbjct: 189 LIHGLCNCSQWKEASAILNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEAQGVLKTMTEMS 248

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           V  D   YN+LM G  L   V  A++LF  M + GC  +VFSY ILINGYCK + I+ A 
Sbjct: 249 VELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSYNILINGYCKAEMIDEAK 308

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            L++EM+ +G+ P +V+YNT
Sbjct: 309 QLFNEMIHQGLTPNIVSYNT 328


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 187/359 (52%), Gaps = 31/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +++ +   L K +  D   +  +++ + G+ P+ +TYN LI  +   G+      
Sbjct: 251 PPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVR 310

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   + R    PD VT + L+  LC   +I EA  +F  +   G  P+VF+YT ++NG  
Sbjct: 311 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYA 370

Query: 134 RTGHTIVALNLFEEMANGNG------EFGVV------------------------CKPDA 163
             G  +   +LF+ M  G+G       F V+                         KPD 
Sbjct: 371 TKGCLVDMTDLFDLML-GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDV 429

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY T+   LC+ G +D A E F +M D+ + PD   Y  LI+GFC      +AK L  E
Sbjct: 430 VTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISE 489

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           +M+ G+  ++V F+ I+N LCK G++ +A  + +L + +G+ P A VY+ LMDG+CL G+
Sbjct: 490 IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGK 549

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +A  +F +M S G   +   YG L+NGYCK   I+  LSL+ EML KGI+P+ + YN
Sbjct: 550 MEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 608



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 161/313 (51%), Gaps = 10/313 (3%)

Query: 36  VLSLFKRLNSIG-----LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
            ++LF R  S       L P  +TY IL++C  +  R        G++LR+    + +  
Sbjct: 90  AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIA 149

Query: 91  TSLIKGLCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
             L+KG C   R  EA   L  +    GC PDVF+Y+ L+  LC  G +  A +L   MA
Sbjct: 150 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 209

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
            G    G VC PD + YST+ DG  KEG V+KA +LF +M    I PD VTY+S++   C
Sbjct: 210 EG----GAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALC 265

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            A   ++A+    +M+++GV PN  T+N ++      G+  EA R+ + M +  + PD  
Sbjct: 266 KARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVV 325

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
             + LM   C  G++  A+++F +M   G   +VFSY I++NGY     +     L+  M
Sbjct: 326 TLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLM 385

Query: 330 LSKGIRPTVVTYN 342
           L  GI P + T+N
Sbjct: 386 LGDGIAPDIYTFN 398



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 166/341 (48%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M  M    P V S+ I+    A       +  LF  +   G+ PD+YT+N+LI  +
Sbjct: 346 VFDTMA-MKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAY 404

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +    ++   +      PD VT+ ++I  LC   ++ +A   F ++   G  PD 
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 464

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           + Y  LI G C  G  + A  L  E+ N           D + +S+I + LCK G V  A
Sbjct: 465 YAYHCLIQGFCTHGSLLKAKELISEIMNNGMHL------DIVFFSSIINNLCKLGRVMDA 518

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F    +  ++P  V Y+ L+ G+C      +A  +F  M+  G++PN V +  ++N 
Sbjct: 519 QNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNG 578

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G++DE   L   M+Q G++P   +YN ++DG    GR   AK  F  M  +G   +
Sbjct: 579 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMN 638

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y I++ G  KN+  + A+ L+ E+ +  ++  ++T NT
Sbjct: 639 KCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 679



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 160/334 (47%), Gaps = 7/334 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ M R H   P V ++  +   L +    D  +  F ++   G+ PD Y Y+ LI  F
Sbjct: 416 IFNEM-RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 474

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +     ++  I+ +    D V F+S+I  LC   R+M+A  +F      G  P  
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA 534

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+ L++G C  G    AL +F+ M +   E      P+ + Y T+ +G CK G +D+ 
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE------PNDVVYGTLVNGYCKIGRIDEG 588

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M  + I P  + Y  +I G   A     AK  F EM + G+  N  T+N+++  
Sbjct: 589 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRG 648

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L KN   DEA  L + +  + V+ +    NT++ G   T RV  AK+LF S+  +G +  
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           V +Y I+I    K   +E A  ++S M + G  P
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 742



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 165/340 (48%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ML      P + +FN+L    A     D  + +F  +   G+ PD+ TY  +I   
Sbjct: 381 LFDLMLG-DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 439

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++G++        +++     PD   +  LI+G C    +++A  L +++   G   D+
Sbjct: 440 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDI 499

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             ++++IN LC+ G  + A N+F+   N      V   P A+ YS + DG C  G ++KA
Sbjct: 500 VFFSSIINNLCKLGRVMDAQNIFDLTVN------VGLHPTAVVYSMLMDGYCLVGKMEKA 553

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +F  M    I P+ V Y +L+ G+C     +E   LF EM+ +G++P+ + +N+I++ 
Sbjct: 554 LRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 613

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L + G+   A      M + G+  +   YN ++ G       + A  LF  + +     +
Sbjct: 614 LFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKIN 673

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +   +I G  + + +E A  L++ +   G+ P VVTY+
Sbjct: 674 IITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYS 713



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 170/342 (49%), Gaps = 15/342 (4%)

Query: 10  MHPSP-----PPVCSFNILFGCL---AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +H +P     P V S++IL   L    K+   D +L +     ++   PD+  Y+ +I+ 
Sbjct: 170 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPDVVAYSTVIDG 228

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           F K G V+    +   +++    PD VT++S++  LC    + +A A   ++   G  P+
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPN 288

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +TY  LI G   TG    A+ +F+EM   +        PD +T S +   LCK G + +
Sbjct: 289 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS------ILPDVVTLSMLMGSLCKYGKIKE 342

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+++F  M  +  NP+V +YT ++ G+       +   LF  M+  G+ P++ TFNV++ 
Sbjct: 343 ARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIK 402

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
                G +D+A  +   M   GV+PD   Y T++   C  G+++ A E F  M   G   
Sbjct: 403 AYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAP 462

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D ++Y  LI G+C +  +  A  L SE+++ G+   +V +++
Sbjct: 463 DKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 504



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 5/213 (2%)

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           CR+G  + A+ LF   A+   +   V  P + TY+ + D   +    + A   F ++   
Sbjct: 83  CRSGPAL-AVALFNRAAS-RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRT 140

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDE 251
            +  +++    L++GFC A   +EA  + +    + G  P+V ++++++  LC  GK  +
Sbjct: 141 GLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 200

Query: 252 ASRLLELMIQIGV--RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           A  LL +M + G    PD   Y+T++DGF   G VN+A +LF  M   G   D  +Y  +
Sbjct: 201 ADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSV 260

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  CK + ++ A +   +M++KG+ P   TYN
Sbjct: 261 VHALCKARAMDKAEAFLRQMVNKGVLPNNWTYN 293



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 112/254 (44%), Gaps = 7/254 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+     P  V  +  L     K    D  LSLF+ +   G+ P    YNI+I+  
Sbjct: 556 VFDAMVSAGIEPNDVV-YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + GR  P  V    +  S    +  T+  +++GL       EA  LF +LRA   K ++
Sbjct: 615 FEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 674

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T  T+I G+ +T     A +LF  ++      G+V  P  +TYS +   L KEG V++A
Sbjct: 675 ITLNTMIAGMFQTRRVEEAKDLFASISRS----GLV--PCVVTYSIMITNLIKEGLVEEA 728

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +++F  M++    PD      ++R     N+   A     ++ ++      +T  ++++ 
Sbjct: 729 EDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDL 788

Query: 243 LCKNGKMDEASRLL 256
               G   E  R L
Sbjct: 789 FSSKGTCREHIRFL 802


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 185/341 (54%), Gaps = 9/341 (2%)

Query: 4    FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
            FD+            + N L   L + K     L +++  N +   P+++T+ ILI+  C
Sbjct: 831  FDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYR--NKLCCSPNMFTFTILIHGLC 888

Query: 64   KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDV 122
            + G +   + +L  + R     + +    +IKGLC+  ++  A  LF ++   G C PDV
Sbjct: 889  RAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDV 948

Query: 123  FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            FTY+T+++ L ++G    A  L E+M +        C P+ +TYS++  GLCK G +D+A
Sbjct: 949  FTYSTIVDSLVKSGKVDDACRLVEDMVSKG------CSPNVVTYSSLLHGLCKAGKLDEA 1002

Query: 183  KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
              L  +M     +P++VTY ++I G C     +EA  L  EM+D G QPNVVT+ V+++ 
Sbjct: 1003 TALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDA 1062

Query: 243  LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             CK GK ++A  L+E+M++ G  P+   YN+L+D FC    V RA +L  SM   GC+ +
Sbjct: 1063 FCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPN 1122

Query: 303  VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            V SY  +I G CK  ++   + L  +MLS    P +VT+NT
Sbjct: 1123 VVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNT 1163



 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 183/335 (54%), Gaps = 8/335 (2%)

Query: 11   HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFP-DLYTYNILINCFCKMGRVS 69
            H  P  V   N++   L   +  D+ L LFK +   G  P D++TY+ +++   K G+V 
Sbjct: 906  HGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVD 965

Query: 70   PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
                ++  ++    +P+ VT++SL+ GLC   ++ EA AL  ++   GC P++ TY T+I
Sbjct: 966  DACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTII 1025

Query: 130  NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            +G C+ G    A +L EEM +G       C+P+ +TY+ + D  CK G  + A  L   M
Sbjct: 1026 DGHCKLGRIDEAYHLLEEMVDGG------CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVM 1079

Query: 190  KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
             ++   P++ TY SL+  FC  ++   A  L   M+ +G  PNVV++N ++  LCK  K+
Sbjct: 1080 VEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKV 1139

Query: 250  DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
             E   LLE M+     PD   +NT++D  C T RV+ A ELF  ++ +GC  ++ +Y  L
Sbjct: 1140 HEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSL 1199

Query: 310  INGYCKNKEIEGALSLYSEMLSK-GIRPTVVTYNT 343
            ++G CK++  + A  L  EM  K G  P ++TYNT
Sbjct: 1200 VHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNT 1234



 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 175/329 (53%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++N +   L+K+   D  + L + +   G  P++++YN +++ FCK  RV     
Sbjct: 227 PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALW 286

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L +++     PD V++T++I GLC   ++ EA  +  K+   GC+P+V TY TL++G C
Sbjct: 287 LLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC 346

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R G    A+ L  +M     E G   +P+AITY+ I    C+   +++A ++   M    
Sbjct: 347 RVGDLDGAVELVRKMT----ERGY--RPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTG 400

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD + Y+++I GFC A    EA  L  +M+ +G +P+V   + +++ LCK   +D A 
Sbjct: 401 CPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQ 460

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL + I +   PD   Y+ L+   C   R+  A+     M  N C  DV +Y  +++G 
Sbjct: 461 ELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGL 520

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK++ I  A  L+  M + G+ P VVTY+
Sbjct: 521 CKSRRINDAFLLFDRMRAAGVMPDVVTYS 549



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 186/341 (54%), Gaps = 7/341 (2%)

Query: 3    IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
            +F  M      PP V +++ +   L K+   D    L + + S G  P++ TY+ L++  
Sbjct: 934  LFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGL 993

Query: 63   CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            CK G++     +L R+ RS  +P+ VT+ ++I G C   RI EA  L  ++   GC+P+V
Sbjct: 994  CKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNV 1053

Query: 123  FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             TYT L++  C+ G    A+ L E M     E G V  P+  TY+++ D  CK+  V++A
Sbjct: 1054 VTYTVLLDAFCKCGKAEDAIGLVEVMV----EKGYV--PNLFTYNSLLDMFCKKDEVERA 1107

Query: 183  KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +L   M  +   P+VV+Y ++I G C A   +E   L  +M+     P++VTFN I++ 
Sbjct: 1108 CQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 1167

Query: 243  LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMR 301
            +CK  ++D A  L  L+ + G  P+   YN+L+ G C + R ++A+ L   M    GC  
Sbjct: 1168 MCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSP 1227

Query: 302  DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            D+ +Y  +I+G CK+K ++ A  L+ +MLS G+ P  VTY+
Sbjct: 1228 DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYS 1268



 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 170/341 (49%), Gaps = 8/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R           +IL G     +  D VL    R  S    PD  TYN +IN  
Sbjct: 183 LFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHF--REMSKTCPPDSVTYNTMINGL 240

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K  R+     +L  ++ + F P+  ++ +++ G C  +R+  A  L  ++   GC PDV
Sbjct: 241 SKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDV 300

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +YTT+INGLC+      A  + ++M          C+P+ ITY T+ DG C+ G +D A
Sbjct: 301 VSYTTVINGLCKLDQVDEACRVMDKMIQRG------CQPNVITYGTLVDGFCRVGDLDGA 354

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL  KM +    P+ +TY +++  FC  ND   A  +   M+  G  P+ + ++ I++ 
Sbjct: 355 VELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISG 414

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK GK+ EA  LLE MI+ G RPD +  +TL+D  C    ++ A+EL        C  D
Sbjct: 415 FCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPD 474

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +Y ILI+  CK K +  A S    M+     P VVTYN+
Sbjct: 475 VVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNS 515



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 168/329 (51%), Gaps = 5/329 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + ++N L     K    +    L   +   G  P++ +YN +I   CK  +V  G ++
Sbjct: 1086 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLL 1145

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L ++L +   PD VTF ++I  +C   R+  A  LF  ++  GC P++ TY +L++GLC+
Sbjct: 1146 LEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 1205

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            +     A  L  EM    G     C PD ITY+T+ DGLCK   VD+A +LFL+M  + +
Sbjct: 1206 SRRFDQAEYLLREMTRKQG-----CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 1260

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PD VTY+ +I   C     +EA  +   M+  G  P  +T+  +++  CK G +D+A  
Sbjct: 1261 APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALE 1320

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            +L+L++  G  PD   ++  +D     GR+ +A EL  +M   G + D  +Y  L+ G+C
Sbjct: 1321 ILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFC 1380

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                 E A+ L+  M   G  P   TY T
Sbjct: 1381 DASLTEDAVDLFEVMRQCGCEPDNATYTT 1409



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 161/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     +    +    + + +   G  PD   Y+ +I+ FCK G++     +
Sbjct: 368 PNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDL 427

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++R    PD    ++LI  LC  + I  A  L        C PDV  Y+ LI+ LC+
Sbjct: 428 LEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCK 487

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A +  + M          C PD +TY+++ DGLCK   ++ A  LF +M+   +
Sbjct: 488 AKRLPEAESWLDVMVKNR------CYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGV 541

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY+ +I  FC  N+ + A  +   M +    P+VVT++ ++N LCK G +D+A  
Sbjct: 542 MPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFD 601

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M+  G  P+   YNTL+DG C   +V +A E+   M    C  D  +Y  LING C
Sbjct: 602 VFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLC 661

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               +E A  +  EM  KG  P  +TY T
Sbjct: 662 NASRLEEAWRVLREMKDKGCLPDRMTYGT 690



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 166/323 (51%), Gaps = 8/323 (2%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V S+N +   L K       + L +++ S    PD+ T+N +I+  CK  RV   + +
Sbjct: 1121 PNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYEL 1180

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLC 133
               I  S  TP+ VT+ SL+ GLC   R  +A  L  ++ R  GC PD+ TY T+I+GLC
Sbjct: 1181 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 1240

Query: 134  RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            ++     A  LF +M +          PD +TYS +   LCK  F+D+A  +   M    
Sbjct: 1241 KSKRVDRAYKLFLQMLSDG------LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNG 1294

Query: 194  INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             +P  +TY +LI GFC   + ++A  +   ++ +G  P+VVTF++ ++ L K G++ +A 
Sbjct: 1295 FDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAG 1354

Query: 254  RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             LLE M++ G+ PD   YNTL+ GFC       A +LF  M   GC  D  +Y  L+   
Sbjct: 1355 ELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 1414

Query: 314  CKNKEIEGALSLYSE-MLSKGIR 335
               K  +  L+  S+ M+  G +
Sbjct: 1415 VDKKSYKDLLAEVSKSMVDTGFK 1437



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 165/338 (48%), Gaps = 15/338 (4%)

Query: 1   FCIFDYMLRMHP---------SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD 51
           FC  + M R H           PP   +++ +     K         L +++   G  PD
Sbjct: 380 FCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPD 439

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
           +   + LI+  CK   +     +L   +     PD V ++ LI  LC   R+ EA +   
Sbjct: 440 VACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLD 499

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
            +    C PDV TY ++++GLC++     A  LF+ M       GV+  PD +TYS +  
Sbjct: 500 VMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAA----GVM--PDVVTYSIVIH 553

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
             CK+  +D A ++  +MK+    PDVVTY++LI G C A   ++A  +F EM+  G  P
Sbjct: 554 SFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAP 613

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N+VT+N +++ LCK  K+++A+ +LE+M +    PD+  Y  L++G C   R+  A  + 
Sbjct: 614 NLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVL 673

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
             M+  GC+ D  +YG L+    K   +E    L  EM
Sbjct: 674 REMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 154/297 (51%), Gaps = 7/297 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G   +++  N L+N   K  + S    +    +   +  D VT+++LI G     +I+ A
Sbjct: 121 GYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPA 180

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             LF ++   G K     + +++ GLC  G    A+  F EM+         C PD++TY
Sbjct: 181 YELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSK-------TCPPDSVTY 233

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+ +GL K   +D A  L  +M D    P+V +Y +++ GFC AN    A  L  +M+ 
Sbjct: 234 NTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVT 293

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G  P+VV++  ++N LCK  ++DEA R+++ MIQ G +P+   Y TL+DGFC  G ++ 
Sbjct: 294 RGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDG 353

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A EL   M   G   +  +Y  +++ +C+  ++E A  +   M+  G  P  + Y+T
Sbjct: 354 AVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYST 410



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 146/294 (49%), Gaps = 7/294 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + M+R    P   C  + L   L K    D+   L +    +   PD+  Y+ILI+  
Sbjct: 427 LLEQMIRRGCRPDVAC-LSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHAL 485

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  R+      L  ++++   PD VT+ S++ GLC   RI +A  LF ++RA G  PDV
Sbjct: 486 CKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDV 545

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY+ +I+  C+  +   A  + E M          C PD +TYS + +GLCK G VDKA
Sbjct: 546 VTYSIVIHSFCKDNNLDSAFKMLERMKEAK------CVPDVVTYSALINGLCKAGTVDKA 599

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++F +M      P++VTY +LI G C  N   +A  +   M  Q   P+ +T+  ++N 
Sbjct: 600 FDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLING 659

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           LC   +++EA R+L  M   G  PD   Y TL+     T  +   ++L   ME+
Sbjct: 660 LCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEA 713



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 152/339 (44%), Gaps = 36/339 (10%)

Query: 7    MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
            M R     P + ++N +   L K+K  D    LF ++ S GL PD  TY+I+I+  CK  
Sbjct: 1219 MTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWR 1278

Query: 67   RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
             +     VL  +L++ F P A+T+ +LI G C    + +A  +   L + G  PDV T++
Sbjct: 1279 FMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFS 1338

Query: 127  TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
              I+ L + G    A  L E M       G+V  PD +TY+T+  G C     + A +LF
Sbjct: 1339 IFIDWLSKRGRLRQAGELLETMLRA----GLV--PDTVTYNTLLKGFCDASLTEDAVDLF 1392

Query: 187  LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE----MMDQGVQPNVVTFNVIMNE 242
              M+     PD  TYT+L+       D    K L  E    M+D G + N          
Sbjct: 1393 EVMRQCGCEPDNATYTTLVGHLV---DKKSYKDLLAEVSKSMVDTGFKLN---------- 1439

Query: 243  LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
                    E S  LE  I+  V  D  +   ++D F   G    A+++F  M+     R+
Sbjct: 1440 -------HELSSKLEASIE--VEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQ----RN 1486

Query: 303  VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            V  +  ++  Y  +K+ E A  L+  M  +G+ P  VT+
Sbjct: 1487 VVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTF 1525



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 139/317 (43%), Gaps = 48/317 (15%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P   ++  L     K  + D  L + + L S G +PD+ T++I I+   K GR+     +
Sbjct: 1297 PGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGEL 1356

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL-- 132
            L  +LR+   PD VT+ +L+KG C  S   +A  LF  +R  GC+PD  TYTTL+  L  
Sbjct: 1357 LETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVD 1416

Query: 133  --------CRTGHTIV--ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
                         ++V     L  E+++   E  +  + D      I D   K G    A
Sbjct: 1417 KKSYKDLLAEVSKSMVDTGFKLNHELSS-KLEASIEVEADVRLGCAIVDMFGKCGSPQDA 1475

Query: 183  KELFLKMKDENI-------------------------------NPDVVTYTSLIRGFCYA 211
            +++F  M   N+                                PD VT+ SL+   C+A
Sbjct: 1476 RKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHA 1535

Query: 212  NDWNEAKCLFIEM-MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
               + A   F+ +  D G++P V  F+ +++ L + G ++EA    +LM+ +  +P A+ 
Sbjct: 1536 GLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAE---DLMLGMPCKPSAAT 1592

Query: 271  YNTLMDGFCLTGRVNRA 287
            +N L+  + + G   RA
Sbjct: 1593 WNCLLSAYKICGDFERA 1609



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 61/165 (36%), Gaps = 42/165 (25%)

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           +W E +         G Q  +   N ++N L K  +  +A  L    I+     D   Y+
Sbjct: 114 EWAETR--------DGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYS 165

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNG---------------------------------- 298
           TL+ GF   G++  A ELF  M   G                                  
Sbjct: 166 TLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT 225

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C  D  +Y  +ING  K+  ++ A+ L  EM+  G  P V +YNT
Sbjct: 226 CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNT 270


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 179/349 (51%), Gaps = 13/349 (3%)

Query: 2   CIFDYMLRMHPSP----PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNI 57
            +F+ + R    P    P VC++NIL  C  +        +LF R    GL  D+   NI
Sbjct: 100 ALFNRICREEARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANI 159

Query: 58  LINCFCKMGRVSPGF-VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--R 114
           L+ C C   R      V+L R+      PD +++++++K LC +SR   A  L   +  +
Sbjct: 160 LLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKK 219

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
           + GC P+V +Y T+I+G  R G    A NLF EM     + GVV  PD +TYS+  D LC
Sbjct: 220 SGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMM----QQGVV--PDVVTYSSYIDALC 273

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K   +DKA+ +  +M      PD VTY  +I G+     W E   +F EM  +G+ P++ 
Sbjct: 274 KARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIF 333

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T N  M+ LCK+GK  EA+   + M   G +PD   Y+ L+ G+   G V     LF SM
Sbjct: 334 TCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSM 393

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           E NG + D   Y ILI+ Y K   ++ A+ ++++M  +G+ P   TY T
Sbjct: 394 EGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGT 442



 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 185/360 (51%), Gaps = 36/360 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++     L K +  D    + +++ S G  PD  TYN +I+ +  +G+      +
Sbjct: 260 PDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGM 319

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R    PD  T  S +  LC   +  EAA  F  + A G KPD+ TY+ L++G   
Sbjct: 320 FREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAA 379

Query: 135 TGHTIVALNLFEEMANGNG--------------------------------EFGVVCKPD 162
            G+ +  LNLF  M  GNG                                E GV+  PD
Sbjct: 380 EGYVVDMLNLFNSM-EGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVM--PD 436

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
           A TY T+     + G +  A + F +M    + PD + Y SLI+GFC   +  +AK L  
Sbjct: 437 AWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELIS 496

Query: 223 EMMDQGV-QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
           EMM +G+ +PN V FN I+N LCK G++ EA  + +L+I IG RPD   +N+L+DG+ L 
Sbjct: 497 EMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLV 556

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G++ +A  +  +M S G   DV +Y  L++GYC+N  I+  L L+ EMLSKG++PT +TY
Sbjct: 557 GKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITY 616



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 171/329 (51%), Gaps = 5/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++++L    A   +   +L+LF  +   G+  D   YNILI+ + K G +    ++
Sbjct: 365 PDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLI 424

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++      PDA T+ ++I       R+ +A   F ++ A G KPD   Y +LI G C 
Sbjct: 425 FTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCM 484

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+ + A  L  EM +       + +P+ + +++I + LCKEG V +A+++F  +     
Sbjct: 485 HGNLVKAKELISEMMSRG-----IPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGE 539

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+T+ SLI G+       +A  +   M+  G++P+VVT++ +++  C+NG++D+   
Sbjct: 540 RPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLI 599

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+  GV+P    Y  ++ G    GR   AK++   M  +G   D+ + GI++ G C
Sbjct: 600 LFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLC 659

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +N   + A++L+ ++ +  ++  +   NT
Sbjct: 660 RNNCDDEAIALFKKLGAMNVKFNIAIINT 688



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 173/354 (48%), Gaps = 42/354 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +NIL     K    D  + +F ++   G+ PD +TY  +I  F +MGR++       +++
Sbjct: 405 YNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMI 464

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPDVFTYTTLINGLCRTGHT 138
                PD + + SLI+G C    +++A  L +++ + G  +P+   + ++IN LC+ G  
Sbjct: 465 AMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRV 524

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
           + A ++F+ + +  GE     +PD IT++++ DG    G ++KA  +   M    I PDV
Sbjct: 525 VEAQDIFDLVIH-IGE-----RPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDV 578

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE---------------- 242
           VTY++L+ G+C     ++   LF EM+ +GV+P  +T+ +I++                 
Sbjct: 579 VTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHE 638

Query: 243 -------------------LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
                              LC+N   DEA  L + +  + V+ + ++ NT++D      +
Sbjct: 639 MIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRK 698

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
              A ELF S+ + G + +  +YG++I    K   +E A +++S M   G  P+
Sbjct: 699 REEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPS 752


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 181/329 (55%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     +    D    L   +   GL P+L T+N ++N  CK GR+     V
Sbjct: 190 PNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKV 249

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    PD V++ +L+ G C      EA ++F ++   G  PDV T+T+LI+ +C+
Sbjct: 250 FDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCK 309

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+ L  EM     E G+  + + IT++ + DG CK+GF+D A     +M+   I
Sbjct: 310 AGNLERAVGLVREMR----ERGL--QMNEITFTALIDGFCKKGFLDDALLAVREMRQCRI 363

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VV Y +LI G+C     +EA+ L  EM  +GV+P+VVT++ I++  CKNG    A +
Sbjct: 364 QPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQ 423

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M++ GV PDA  Y++L+   C   R+  A  LF +M S G   D  +Y  LI+G+C
Sbjct: 424 LNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHC 483

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +E ALSL+ EM+  G+ P VVTY+ 
Sbjct: 484 KEGNVERALSLHDEMVKAGVLPDVVTYSV 512



 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 176/329 (53%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L+ +    +    F  + S G+ P++YTYNIL+   C  G       V
Sbjct: 121 PSVLAYNAVLLALS-DASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSV 179

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P+AVT+ +L+   C    +  A  L   +R  G KP++ T+ +++NG+C+
Sbjct: 180 LRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICK 239

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F+EM            PD ++Y+T+  G CK G   +A  +F +M  + I
Sbjct: 240 AGRMEDARKVFDEMVKEG------LAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGI 293

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVT+TSLI   C A +   A  L  EM ++G+Q N +TF  +++  CK G +D+A  
Sbjct: 294 MPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALL 353

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            +  M Q  ++P    YN L++G+C+ GR++ A+EL   ME+ G   DV +Y  +++ YC
Sbjct: 354 AVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYC 413

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           KN +   A  L  +ML  G+ P  +TY++
Sbjct: 414 KNGDTHSAFQLNQQMLENGVLPDAITYSS 442



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 179/340 (52%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD ML      P V ++NIL   L    H    LS+ + +   G  P+  TYN L+  FC
Sbjct: 145 FDSMLS-DGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFC 203

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           + G V     ++  +      P+ VTF S++ G+C   R+ +A  +F ++   G  PD  
Sbjct: 204 RAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGV 263

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TL+ G C+ G +  AL++F EM       G++  PD +T++++   +CK G +++A 
Sbjct: 264 SYNTLVGGYCKVGCSHEALSVFAEMTRK----GIM--PDVVTFTSLIHVMCKAGNLERAV 317

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L  +M++  +  + +T+T+LI GFC     ++A     EM    +QP+VV +N ++N  
Sbjct: 318 GLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGY 377

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  G+MDEA  L+  M   GV+PD   Y+T++  +C  G  + A +L   M  NG + D 
Sbjct: 378 CMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDA 437

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  LI   C+ K +  A  L+  M+S G++P  VTY +
Sbjct: 438 ITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTS 477



 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 172/337 (51%), Gaps = 6/337 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+R     P + +FN +   + K    +    +F  +   GL PD  +YN L+  +CK+G
Sbjct: 217 MMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVG 276

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
                  V   + R    PD VTFTSLI  +C    +  A  L  ++R  G + +  T+T
Sbjct: 277 CSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFT 336

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI+G C+ G    AL    EM     +  VVC      Y+ + +G C  G +D+A+EL 
Sbjct: 337 ALIDGFCKKGFLDDALLAVREMRQCRIQPSVVC------YNALINGYCMVGRMDEARELV 390

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M+ + + PDVVTY++++  +C   D + A  L  +M++ GV P+ +T++ ++  LC+ 
Sbjct: 391 REMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEE 450

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            ++ +A  L + MI +G++PD   Y +L+DG C  G V RA  L   M   G + DV +Y
Sbjct: 451 KRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTY 510

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +LING  K+   + A  L  ++  +   P  + Y+ 
Sbjct: 511 SVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDA 547



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 165/338 (48%), Gaps = 21/338 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L          D    L + + + G+ PD+ TY+ +++ +CK G     F +
Sbjct: 365 PSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQL 424

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L +   PDA+T++SLI+ LC E R+ +A  LF  + + G +PD  TYT+LI+G C+
Sbjct: 425 NQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCK 484

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL+L +EM       GV+  PD +TYS + +GL K     +A+ L  K+  E  
Sbjct: 485 EGNVERALSLHDEMVKA----GVL--PDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEP 538

Query: 195 NPDVVTYTSLIR---------------GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            P  + Y +L+R               GFC     NEA  ++  ++D+    +   ++V+
Sbjct: 539 VPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVL 598

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+ G + +A    + M+Q G  P+++   +L+ G    G V  A ++   + +   
Sbjct: 599 IHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCS 658

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           + D  +   LI+   K   ++  L +   M   G+ P+
Sbjct: 659 LADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLPS 696



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 163/352 (46%), Gaps = 51/352 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   + K  + +  + L + +   GL  +  T+  LI+ FCK G +    + 
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLA 354

Query: 75  LGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + R +R C   P  V + +LI G C   R+ EA  L  ++ A G KPDV TY+T+++  C
Sbjct: 355 V-REMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYC 413

Query: 134 RTGHTIVALNLFEEM-ANG--------NGEFGVVC--------------------KPDAI 164
           + G T  A  L ++M  NG        +    V+C                    +PD +
Sbjct: 414 KNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEV 473

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY+++ DG CKEG V++A  L  +M    + PDVVTY+ LI G   +    EA+ L  ++
Sbjct: 474 TYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKL 533

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
             +   P  + ++ +M   C+N ++     LL+                   GFC+ G +
Sbjct: 534 YHEEPVPANIKYDALM-RCCRNAELKSVLALLK-------------------GFCMKGLM 573

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           N A +++ S+       D   Y +LI+G+C+   +  ALS + +ML  G  P
Sbjct: 574 NEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAP 625


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 181/329 (55%), Gaps = 8/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L     +  + +  L +   +   G  PD+YTYN LI+  CK+G       +
Sbjct: 261 PDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEI 320

Query: 75  LGR-ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L + ILR C +P+ VT+ +LI  LC E+ I  A  L   L + G  PDV T+ TLI GLC
Sbjct: 321 LQQMILREC-SPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLC 379

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            + +  +A+ +FEEM N        CKPD  TYS + D LC E  + +A  L  +M+   
Sbjct: 380 LSKNQDIAMEMFEEMKNKG------CKPDEFTYSILIDSLCYERRLKEALMLLKEMESSG 433

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              + V Y +LI G C +    +A+ +F +M   GV  + VT+N +++ LCKN +++EAS
Sbjct: 434 CARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEAS 493

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L++ MI  G++PD   YN+L+  FC  G + +A ++  +M SNGC  D+F+YG LI G 
Sbjct: 494 QLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGL 553

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           C+   ++ A  L   +  KGI  T   YN
Sbjct: 554 CRAGRVDVASKLLRSVQMKGIVLTPHAYN 582



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 178/333 (53%), Gaps = 6/333 (1%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   +F  L     +    +  L + K++   G      +  +L+N FCK GRV  
Sbjct: 187 HGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEE 246

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
               +  +    F+PD VTF SL+ G C    + +A  +   +   G  PDV+TY +LI+
Sbjct: 247 ALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLIS 306

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G+C+ G    A+ + ++M          C P+ +TY+T+   LCKE  ++ A +L   + 
Sbjct: 307 GMCKLGEFEKAIEILQQMILRE------CSPNTVTYNTLISALCKENEIEAATDLARILV 360

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            + + PDV T+ +LI+G C + + + A  +F EM ++G +P+  T++++++ LC   ++ 
Sbjct: 361 SKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLK 420

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA  LL+ M   G   +A VYNTL+DG C + R+  A+E+F  ME  G  R   +Y  LI
Sbjct: 421 EALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLI 480

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G CKNK +E A  L  +M+ +G++P   TYN+
Sbjct: 481 DGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNS 513



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 159/325 (48%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S  +L     K    +  L     ++  G  PD  T+N L+N FC++G V+    ++  +
Sbjct: 230 SVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFM 289

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +   F PD  T+ SLI G+C      +A  +  ++    C P+  TY TLI+ LC+    
Sbjct: 290 IEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEI 349

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A +L   + +     G++  PD  T++T+  GLC     D A E+F +MK++   PD 
Sbjct: 350 EAATDLARILVSK----GLL--PDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDE 403

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TY+ LI   CY     EA  L  EM   G   N V +N +++ LCK+ ++++A  + + 
Sbjct: 404 FTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQ 463

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M  +GV   +  YNTL+DG C   RV  A +L   M   G   D F+Y  L+  +C+  +
Sbjct: 464 MELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGD 523

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           IE A  +   M S G  P + TY T
Sbjct: 524 IEKAGDIVQTMASNGCEPDIFTYGT 548



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 176/365 (48%), Gaps = 31/365 (8%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           L+   S P   +F  L          + +L + +  N +G  PD   YNI +N   +  +
Sbjct: 81  LKSSGSIPNATTFATLIQSFTNFHEIENLLKILE--NELGFKPDTNFYNIALNALVEDNK 138

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +    ++  +++      D  TF  LIK LC   ++  A  +  ++   G KPD  T+TT
Sbjct: 139 LKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTT 198

Query: 128 LINGLCRTGHTIVALNLFEEM---------------ANGNGEFGVVCK------------ 160
           L+ G    G    AL + ++M                NG  + G V +            
Sbjct: 199 LMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEG 258

Query: 161 --PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
             PD +T++++ +G C+ G V+ A ++   M ++  +PDV TY SLI G C   ++ +A 
Sbjct: 259 FSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAI 318

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            +  +M+ +   PN VT+N +++ LCK  +++ A+ L  +++  G+ PD   +NTL+ G 
Sbjct: 319 EILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGL 378

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           CL+   + A E+F  M++ GC  D F+Y ILI+  C  + ++ AL L  EM S G     
Sbjct: 379 CLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNA 438

Query: 339 VTYNT 343
           V YNT
Sbjct: 439 VVYNT 443



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 154/328 (46%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L K    +    L + L S GL PD+ T+N LI   C          +
Sbjct: 331 PNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEM 390

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD  T++ LI  LC E R+ EA  L  ++ + GC  +   Y TLI+GLC+
Sbjct: 391 FEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCK 450

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A  +F++M     E   V +  ++TY+T+ DGLCK   V++A +L  +M  E +
Sbjct: 451 SRRIEDAEEIFDQM-----ELLGVSR-SSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGL 504

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY SL+  FC   D  +A  +   M   G +P++ T+  ++  LC+ G++D AS+
Sbjct: 505 KPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASK 564

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  +   G+      YN ++    +  R      LF  M       D  ++ I+  G C
Sbjct: 565 LLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLC 624

Query: 315 K-NKEIEGALSLYSEMLSKGIRPTVVTY 341
                I+ A+    EML KGI P   ++
Sbjct: 625 NGGGPIQEAIDFTVEMLEKGILPEFPSF 652



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 141/301 (46%), Gaps = 7/301 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P VC+FN L   L  +K+ D  + +F+ + + G  PD +TY+ILI+  C   R+    ++
Sbjct: 366 PDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALML 425

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  S    +AV + +LI GLC   RI +A  +F ++   G      TY TLI+GLC+
Sbjct: 426 LKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCK 485

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L ++M           KPD  TY+++    C+ G ++KA ++   M     
Sbjct: 486 NKRVEEASQLMDQMIMEG------LKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGC 539

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ TY +LI G C A   + A  L   +  +G+      +N ++  L    +  E  R
Sbjct: 540 EPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMR 599

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTG-RVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           L   M++    PDA  +  +  G C  G  +  A +  V M   G + +  S+G L  G 
Sbjct: 600 LFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGL 659

Query: 314 C 314
           C
Sbjct: 660 C 660



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 148/333 (44%), Gaps = 47/333 (14%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           HP PP       L   L ++  +D++ +L K+L S G  P+  T+  LI  F     +  
Sbjct: 53  HPLPPN----ETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIE- 107

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
                                +L+K L  E                G KPD   Y   +N
Sbjct: 108 ---------------------NLLKILENE---------------LGFKPDTNFYNIALN 131

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
            L       +   L  +M N     G+V   D  T++ +   LCK   +  A  +  +M 
Sbjct: 132 ALVEDNKLKLVEMLHSKMVNE----GIVL--DVSTFNVLIKALCKAHQLRPAILMLEEMA 185

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           +  + PD +T+T+L++GF    D N A  +  +M+  G     V+  V++N  CK G+++
Sbjct: 186 NHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVE 245

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA R +  + + G  PD   +N+L++GFC  G VN A ++   M   G   DV++Y  LI
Sbjct: 246 EALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLI 305

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G CK  E E A+ +  +M+ +   P  VTYNT
Sbjct: 306 SGMCKLGEFEKAIEILQQMILRECSPNTVTYNT 338



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 105/267 (39%), Gaps = 75/267 (28%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L   L K++  +    +F ++  +G+     TYN LI+  CK  RV     ++ +++
Sbjct: 441 YNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMI 500

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                PD  T+ SL+   C    I +A  +   + + GC+PD+FTY TLI GLCR G   
Sbjct: 501 MEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVD 560

Query: 140 VA-----------------------------------LNLFEEMANGNGEFGVVCKPDAI 164
           VA                                   + LF EM   +        PDA+
Sbjct: 561 VASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSD------PPDAL 614

Query: 165 TYSTITDGLCKEGF-VDKAKELFLKMKDENINPDVVTY---------------------- 201
           T+  +  GLC  G  + +A +  ++M ++ I P+  ++                      
Sbjct: 615 THKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIELINM 674

Query: 202 -----------TSLIRGFCYANDWNEA 217
                      TS+IRGF     +N+A
Sbjct: 675 VMEKAQMSERETSMIRGFLKIRKFNDA 701


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 131/414 (31%), Positives = 198/414 (47%), Gaps = 80/414 (19%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR     P + S N     +A++     V S F R+   G   + P ++TY ILI
Sbjct: 40  VFDELLRRGIGAP-IRSLNGALADVARDNPAAAV-SRFNRMARAGASMVTPTVHTYGILI 97

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK-LRAFGC 118
            C C  GR+  GF  LG +++  F  + + F  L+KGLCA+ R  +A  +  + +   GC
Sbjct: 98  GCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELGC 157

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF++T ++ GLC    +  AL L   MA+  G     C P+ ++YST+TDGL K G 
Sbjct: 158 VPNVFSHTIILKGLCHENRSQEALELLHMMADDGGG----CLPNVVSYSTVTDGLLKGGD 213

Query: 179 VDKAKELFLKMKDENINPDVVTY-----------------------------------TS 203
            DKA   + +M D  I P+VVTY                                   TS
Sbjct: 214 PDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTS 273

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+ GFC +    EA     +M   GV+PNVVT++  M+ LCKNG+  EA ++   M++ G
Sbjct: 274 LVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRG 333

Query: 264 VRPDASVYNTLMDGFCL-----------------------------------TGRVNRAK 288
           ++PD + Y++L+ G+ +                                    G+V+ A 
Sbjct: 334 LKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAM 393

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +F  M   G   +  +Y  LINGYCK   +E AL+L+ EM+S G+ P  +TYN
Sbjct: 394 LVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYN 447



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 155/322 (48%), Gaps = 10/322 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL--NSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P V S  I+   L         L L   +  +  G  P++ +Y+ + +   K G     +
Sbjct: 159 PNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAY 218

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
                +L     P+ VT++S+I  LC    + +A  +  ++   G  P+ FTYT+L++G 
Sbjct: 219 ATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGF 278

Query: 133 CRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           C +G    A+   E+M +NG        +P+ +TYS+  D LCK G   +A+++F  M  
Sbjct: 279 CSSGQLTEAIKFLEKMCSNG-------VEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVK 331

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             + PD+ TY+SL+ G+       E   LF  M+   +QP+   FN ++    K GK+DE
Sbjct: 332 RGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDE 391

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  +   M   G++P+   YNTL++G+C   R+  A  LF  M SNG   +  +Y I++ 
Sbjct: 392 AMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQ 451

Query: 312 GYCKNKEIEGALSLYSEMLSKG 333
           G  +      A   Y +++  G
Sbjct: 452 GLFRTGRTGTAKEFYVQIIKSG 473



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 145/309 (46%), Gaps = 30/309 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++ +   L K    D   + ++ +    + P++ TY+ +I   CK   +     V
Sbjct: 196 PNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEV 255

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++++  TP+  T+TSL+ G C+  ++ EA     K+ + G +P+V TY++ ++ LC+
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK 315

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F  M           KPD  TYS++  G   EG + +   LF  M   ++
Sbjct: 316 NGRCTEARKIFYSMVKRG------LKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDM 369

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   + +LI         +EA  +F +M  QG++PN VT+N ++N  CK  +M+ A  
Sbjct: 370 QPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALA 429

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV---------------------- 292
           L + M+  GV P+   YN ++ G   TGR   AKE +V                      
Sbjct: 430 LFQEMVSNGVSPNFITYNIMLQGLFRTGRTGTAKEFYVQIIKSGKKDLIEQGLLEELDDL 489

Query: 293 --SMESNGC 299
             SME N C
Sbjct: 490 FLSMEDNDC 498



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P V TY  LI   C A   +        ++ +G +   + FN ++  LC + + D+A 
Sbjct: 86  VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAM 145

Query: 254 RL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--ESNGCMRDVFSYGILI 310
            + L  M ++G  P+   +  ++ G C   R   A EL   M  +  GC+ +V SY  + 
Sbjct: 146 DIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVT 205

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G  K  + + A + Y EML + I P VVTY++
Sbjct: 206 DGLLKGGDPDKAYATYREMLDRRILPNVVTYSS 238



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M++    P     FN L    AK    D  + +F ++   GL P+  TYN LIN +
Sbjct: 360 LFDLMVQSDMQPDHYV-FNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGY 418

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           CK+ R+     +   ++ +  +P+ +T+  +++GL    R   A   + ++   G K
Sbjct: 419 CKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTGTAKEFYVQIIKSGKK 475


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 182/341 (53%), Gaps = 11/341 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R     P V +FN L   + + +  D V  L+K ++ +G+ PD+YTY  LI  F
Sbjct: 208 VFDEMRRS--VQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGF 265

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR+     +   +  +   P+AV FT+LI   C E  +     L+  +R  G  PD+
Sbjct: 266 CRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDL 325

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  L+NGLCR  +   A ++ EEM N         KPD +TY+T+ DG CK+G +D A
Sbjct: 326 VAYNALVNGLCRARNLKAAESIVEEMKNAG------LKPDKVTYTTLIDGCCKDGKLDMA 379

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++  KM ++ ++ D VTYT+LI G   A    +A+ +  EMM+  ++P+  T+ ++++ 
Sbjct: 380 MDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDA 439

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ G +    +LL+ M   G +P    YN +M+G C  G++  A  L  +M + G   D
Sbjct: 440 FCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPD 499

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y IL++G CK+ ++  +  L S   SKG+ P    Y +
Sbjct: 500 DITYNILLDGQCKHGKVANSEELES---SKGMVPDFAVYTS 537



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 170/329 (51%), Gaps = 12/329 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P PVCS     G +++        + + +L   G+ P+   +N+L+  F ++G +     
Sbjct: 153 PAPVCS-----GLMSRLPSTPEAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARK 207

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   + RS   P  VTF +LI G+C    +     L+ ++   G KPDV+TY  LI G C
Sbjct: 208 VFDEMRRS-VQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFC 266

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           RTG    A+ +F EM     + GV   P+A+ ++T+ D  CKEG V+   +L+  M+   
Sbjct: 267 RTGRMENAVKMFNEMR----DTGV--NPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRG 320

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD+V Y +L+ G C A +   A+ +  EM + G++P+ VT+  +++  CK+GK+D A 
Sbjct: 321 VMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAM 380

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + + M +  V  D   Y  L+ G    GR   A+ +   M       D  +Y ++I+ +
Sbjct: 381 DIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAF 440

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           C+  +++    L  EM +KG +P VVTYN
Sbjct: 441 CRKGDVKTGFKLLKEMQNKGKKPGVVTYN 469



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 135/295 (45%), Gaps = 29/295 (9%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           GL PD  +   L+    + G   P  V  G + R   TP+A TF                
Sbjct: 133 GLLPDACS---LVLLALRRGISLPAPVCSGLMSRLPSTPEAYTF---------------- 173

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
              + +L   G  P+   +  L+    R G  + A  +F+EM           +P  +T+
Sbjct: 174 ---YLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRS-------VQPTVVTF 223

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+  G+C+   +D    L+ +M D  + PDV TY +LI+GFC       A  +F EM D
Sbjct: 224 NTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRD 283

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            GV PN V F  +++  CK G ++    L + M   GV PD   YN L++G C    +  
Sbjct: 284 TGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKA 343

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           A+ +   M++ G   D  +Y  LI+G CK+ +++ A+ +  +M  K +    VTY
Sbjct: 344 AESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTY 398



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 104/183 (56%), Gaps = 1/183 (0%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P+   ++ +     + G +  A+++F +M+  ++ P VVT+ +LI G C A D +    L
Sbjct: 184 PETRLFNVLMRDFVRLGELVSARKVFDEMR-RSVQPTVVTFNTLISGMCRARDLDAVDGL 242

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           + EM D GV+P+V T+  ++   C+ G+M+ A ++   M   GV P+A V+ TL+D  C 
Sbjct: 243 YKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCK 302

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G VN   +L+  M   G M D+ +Y  L+NG C+ + ++ A S+  EM + G++P  VT
Sbjct: 303 EGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVT 362

Query: 341 YNT 343
           Y T
Sbjct: 363 YTT 365


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 187/323 (57%), Gaps = 6/323 (1%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N+L   L K   ++ +  +++ + S GL P + T+  LI+  C+ G +     +   +  
Sbjct: 151 NVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRV 210

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P  + +T LI+GLC++++I EA ++   +R  G  P+V+TY TL++G C+  +   
Sbjct: 211 KGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQ 270

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL L+++M    GE G+V  PD +T+  + DGLCK G +  A+ LF+ M   ++ P++  
Sbjct: 271 ALRLYQDML---GE-GLV--PDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAV 324

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y SLI  +C   D +EA  LF+E+    V P+V T+++++  LC   + +EA  + E M 
Sbjct: 325 YNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMT 384

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + G+  ++  YN+L+DG C  G++++A E+   M  NG   +V ++  LI+GYCK + ++
Sbjct: 385 KEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQ 444

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A+ +YSEM+ K + P VVTY  
Sbjct: 445 AAMGIYSEMVIKSLSPDVVTYTA 467



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 183/340 (53%), Gaps = 19/340 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K  +    L L++ +   GL PD+ T+ ILI+  CK G +     +
Sbjct: 250 PNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNL 309

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++   TP+   + SLI   C    + EA ALF +L  F   PDVFTY+ LI GLC 
Sbjct: 310 FVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCS 369

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
              T  A N+FE+M       G++   +++TY+++ DG CKEG +DKA E+  +M +  +
Sbjct: 370 VSRTEEAGNIFEKMTKE----GIL--ANSVTYNSLIDGCCKEGKMDKALEICSQMTENGV 423

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V+T+++LI G+C   +   A  ++ EM+ + + P+VVT+  +++  CK G M EA +
Sbjct: 424 EPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALK 483

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF---VSMESNGCMRDV-------- 303
           L   M+  G+ P+    + L+DG C  G+++ A ELF   +  ++  C  D         
Sbjct: 484 LYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLT 543

Query: 304 --FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              +Y  LI+G C++ +   A+ L+S+M   G++P  V Y
Sbjct: 544 NHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIY 583



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 164/326 (50%), Gaps = 7/326 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R+    P V  + IL   L  +   +   S+ + +  +G++P++YTYN L++ +
Sbjct: 204 MFDEM-RVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGY 262

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+        +   +L     PD VTF  LI GLC    +  A  LF  +  F   P++
Sbjct: 263 CKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNI 322

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y +LI+  C+ G    A+ LF E+      F V   PD  TYS +  GLC     ++A
Sbjct: 323 AVYNSLIDAYCKVGDVSEAMALFLELE----RFEV--SPDVFTYSILIRGLCSVSRTEEA 376

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +F KM  E I  + VTY SLI G C     ++A  +  +M + GV+PNV+TF+ +++ 
Sbjct: 377 GNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDG 436

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK   +  A  +   M+   + PD   Y  ++DG C  G +  A +L+  M  NG   +
Sbjct: 437 YCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPN 496

Query: 303 VFSYGILINGYCKNKEIEGALSLYSE 328
            ++   L++G CK+ +I  AL L++E
Sbjct: 497 CYTISCLLDGLCKDGKISDALELFTE 522



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 175/340 (51%), Gaps = 21/340 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F IL   L K        +LF  +    + P++  YN LI+ +CK+G VS    +
Sbjct: 285 PDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMAL 344

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R   +PD  T++ LI+GLC+ SR  EA  +F K+   G   +  TY +LI+G C+
Sbjct: 345 FLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCK 404

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL +  +M     E GV  +P+ IT+ST+ DG CK   +  A  ++ +M  +++
Sbjct: 405 EGKMDKALEICSQMT----ENGV--EPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSL 458

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDVVTYT++I G C      EA  L+ +M+D G+ PN  T + +++ LCK+GK+ +A  
Sbjct: 459 SPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALE 518

Query: 255 LLELMIQI----------GVRPDAS---VYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           L    I+           G +P  +    Y  L+ G C  G+ ++A +LF  M   G   
Sbjct: 519 LFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQP 578

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           D   Y +++ G  + K I   + L+++ML  G+ P    +
Sbjct: 579 DEVIYVVMLRGLFQVKYI--LMMLHADMLKFGVIPNSAVH 616



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 162/306 (52%), Gaps = 11/306 (3%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           S   RL S    P++Y   I++   CKM  V     +  ++  +  T  A     L+  L
Sbjct: 103 SELSRLKSSKFTPNVYGELIIV--LCKMELVEEALSMYHKV-GAALTIQACNV--LLYVL 157

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
               R      ++ ++ + G  P V T+ TLI+G CR G  + A  +F+EM       G+
Sbjct: 158 VKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVK----GI 213

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           V  P  I Y+ +  GLC +  +++A+ +   M++  + P+V TY +L+ G+C   +  +A
Sbjct: 214 V--PTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQA 271

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             L+ +M+ +G+ P+VVTF ++++ LCK G+M  A  L   MI+  V P+ +VYN+L+D 
Sbjct: 272 LRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDA 331

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           +C  G V+ A  LF+ +E      DVF+Y ILI G C     E A +++ +M  +GI   
Sbjct: 332 YCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILAN 391

Query: 338 VVTYNT 343
            VTYN+
Sbjct: 392 SVTYNS 397


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 178/332 (53%), Gaps = 8/332 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF- 72
           P  V ++ IL  C  + +  D   + F RL   GL  D    N  + C C   R      
Sbjct: 162 PLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALS 221

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLING 131
           ++L R+      PDA ++ ++IK LC  SR  EA  +  ++ +  GC PDV +YT +I+G
Sbjct: 222 MLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHG 281

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           L   G    A NLF EM     + GVV  P+ +TY++I   LCK   +DKA+ +  +M D
Sbjct: 282 LFMEGEISKACNLFNEMV----QKGVV--PNVVTYNSIVHALCKARAMDKAELVLRQMFD 335

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
            +I PD VTYT++I G+     W EA  +F EM  +G+ P++VTFN +M+ LCK+ +  E
Sbjct: 336 NSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKE 395

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A+ +   +   G +PD   Y+ L+ G+   GR      LF SM  NG + D   + ILIN
Sbjct: 396 AAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILIN 455

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + K   ++ AL +++EM  +G+ P VVTY T
Sbjct: 456 AHAKRGMMDEALLIFTEMRGQGVSPNVVTYAT 487



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 168/329 (51%), Gaps = 5/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S++IL    A    +  + +LF  +   G+  D + +NILIN   K G +    ++
Sbjct: 410 PDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLI 469

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P+ VT+ ++I  LC   R+ +A    +++ + G KP+   Y +LI G C 
Sbjct: 470 FTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCT 529

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  I A  L  EM +       + +P+   +S+I   LC EG V  A+++F  +     
Sbjct: 530 HGDLIKAKELVSEMMDQG-----IPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGD 584

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ T+ SLI G+C     ++A  +   M+  G +P+VVT++ ++N   K+G++D+   
Sbjct: 585 RPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLI 644

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+   V+P    Y+ ++DG    GR + AK++F  M  +G    + +Y I++ G C
Sbjct: 645 LFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLC 704

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +N   + A++L+ ++ +  ++  +   NT
Sbjct: 705 RNNCTDEAITLFHKLGAMNLKFEIAILNT 733



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 183/432 (42%), Gaps = 116/432 (26%)

Query: 21  NILFGCLAKNKHYDTVLS-LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           N    CL   K  D  LS L  R++ +G  PD ++YN +I   C   R      +L R+ 
Sbjct: 204 NTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMT 263

Query: 80  RS--CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT-- 135
           +   C +PD V++T +I GL  E  I +A  LF ++   G  P+V TY ++++ LC+   
Sbjct: 264 KGDGC-SPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARA 322

Query: 136 ---------------------------------GHTIVALNLFEEMANGNGEFGVVCKPD 162
                                            G    A  +F+EM       G++  PD
Sbjct: 323 MDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTRE----GLI--PD 376

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW-------- 214
            +T++++ D LCK     +A E+F  +  +   PD+++Y+ L+ G+     +        
Sbjct: 377 IVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFH 436

Query: 215 ---------------------------NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
                                      +EA  +F EM  QGV PNVVT+  ++  LC+ G
Sbjct: 437 SMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMG 496

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR------ 301
           ++ +A   L  MI IG++P+  VY++L+ GFC  G + +AKEL   M   G  R      
Sbjct: 497 RLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFF 556

Query: 302 ------------------------------DVFSYGILINGYCKNKEIEGALSLYSEMLS 331
                                         D+F++  LI+GYC   +++ A  +   M+S
Sbjct: 557 SSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVS 616

Query: 332 KGIRPTVVTYNT 343
            G  P VVTY+T
Sbjct: 617 AGTEPDVVTYST 628



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 165/354 (46%), Gaps = 42/354 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FNIL    AK    D  L +F  +   G+ P++ TY  +I   C+MGR++     L +++
Sbjct: 450 FNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMI 509

Query: 80  RSCFTPDAVTFTSLIKG------------------------------------LCAESRI 103
                P+ V + SLI+G                                    LC E R+
Sbjct: 510 SIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRV 569

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
           M A  +F  +   G +PD+FT+ +LI+G C  G    A  + + M +   E      PD 
Sbjct: 570 MNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTE------PDV 623

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TYST+ +G  K G +D    LF +M  + + P  VTY+ ++ G   A   + AK +F E
Sbjct: 624 VTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHE 683

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M++ G   ++ T+ +I+  LC+N   DEA  L   +  + ++ + ++ NT++       R
Sbjct: 684 MIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKR 743

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
              A +LF S+ ++G + +  +YG++I    K   +E A  ++S M   G  P+
Sbjct: 744 REEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPS 797



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 6/273 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  F+ +   L           +F  +  IG  PD++T+N LI+ +C +G++   F V
Sbjct: 551 PNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGV 610

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   PD VT+++LI G     RI +   LF ++     KP   TY+ +++GL R
Sbjct: 611 LDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFR 670

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A  +F EM        +       TY+ I  GLC+    D+A  LF K+   N+
Sbjct: 671 AGRTSAAKKMFHEMIESGTAMSIS------TYTIILQGLCRNNCTDEAITLFHKLGAMNL 724

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++    ++I          EA  LF  +   G+ PN  T+ V++  L K G ++EA  
Sbjct: 725 KFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADI 784

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           +   M + G  P + + N ++      G + +A
Sbjct: 785 MFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKA 817


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 186/344 (54%), Gaps = 13/344 (3%)

Query: 3   IFDYMLRMHPSP---PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           IFD M    PS    P + SF+ L G L+KN   D  L  F+ + + GL PD   Y ILI
Sbjct: 381 IFDEM----PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 436

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
             FC+ G +S    V   +L      D VT+ +++ GLC E  + EA  LFT++   G  
Sbjct: 437 GGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 496

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD +T+TTLING  + G+   A+ LFE M   N       KPD +TY+T+ DG CK   +
Sbjct: 497 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN------LKPDVVTYNTLIDGFCKGSEM 550

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +K  EL+  M    I P+ ++Y  LI G+C     +EA  L+ EM+++G +  ++T N I
Sbjct: 551 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTI 610

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   C+ G   +A   L  M+  G+ PD   YNTL++GF     ++RA  L   ME++G 
Sbjct: 611 VKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGL 670

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + DV +Y +++NG+ +   ++ A  +  +M+ +G+ P   TY +
Sbjct: 671 LPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTS 714



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 179/362 (49%), Gaps = 41/362 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V + NI+   L KN+  +   S    +   G+FPD+ TYN LIN +C+ G +   F ++ 
Sbjct: 254 VYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMD 313

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P   T+ ++I GLC   + + A  +  ++   G  PD  TY  L+   CR  
Sbjct: 314 SMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRND 373

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           + + A  +F+EM +     GVV  PD +++S +   L K G +D+A + F  MK+  + P
Sbjct: 374 NMMDAERIFDEMPSQ----GVV--PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAP 427

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC------------ 244
           D V YT LI GFC     +EA  +  EM++QG   +VVT+N I+N LC            
Sbjct: 428 DNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELF 487

Query: 245 -----------------------KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
                                  K+G M++A  L E+MIQ  ++PD   YNTL+DGFC  
Sbjct: 488 TEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKG 547

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             + +  EL+  M S     +  SYGILINGYC    +  A  L+ EM+ KG   T++T 
Sbjct: 548 SEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITC 607

Query: 342 NT 343
           NT
Sbjct: 608 NT 609



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 178/340 (52%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML++  SP    ++NIL     +N +      +F  + S G+ PDL +++ LI   
Sbjct: 346 VLDEMLKIGMSPD-TATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLL 404

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G +         +  +   PD V +T LI G C    + EA  +  ++   GC  DV
Sbjct: 405 SKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDV 464

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY T++NGLC+      A  LF EM     E GV   PD  T++T+ +G  K+G ++KA
Sbjct: 465 VTYNTILNGLCKEKMLSEADELFTEMT----ERGVF--PDFYTFTTLINGYSKDGNMNKA 518

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF  M   N+ PDVVTY +LI GFC  ++  +   L+ +M+ + + PN +++ +++N 
Sbjct: 519 VTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILING 578

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G + EA RL + M++ G        NT++ G+C  G   +A E   +M   G + D
Sbjct: 579 YCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPD 638

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  LING+ K + ++ A +L ++M + G+ P V+TYN
Sbjct: 639 GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYN 678



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 175/358 (48%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     +    +    L   ++  GL P ++TYN +IN  CK G+      V
Sbjct: 287 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 346

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L+   +PD  T+  L+   C    +M+A  +F ++ + G  PD+ +++ LI  L +
Sbjct: 347 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 406

Query: 135 TGHTIVALNLFEEMANGN------------GEF---GVV--------------CKPDAIT 165
            G    AL  F +M N              G F   GV+              C  D +T
Sbjct: 407 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 466

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+TI +GLCKE  + +A ELF +M +  + PD  T+T+LI G+    + N+A  LF  M+
Sbjct: 467 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMI 526

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            + ++P+VVT+N +++  CK  +M++ + L   MI   + P+   Y  L++G+C  G V+
Sbjct: 527 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 586

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A  L+  M   G    + +   ++ GYC+      A    S ML KGI P  +TYNT
Sbjct: 587 EAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 644



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 160/324 (49%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++L     + +        F+ L S GL   +   N L+    K+G V   + +   ++
Sbjct: 187 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 246

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           RS    +  T   +I  LC   +I    +  + +   G  PDV TY TLIN  CR G   
Sbjct: 247 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 306

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L + M+      G   KP   TY+ I +GLCK G   +AK +  +M    ++PD  
Sbjct: 307 EAFELMDSMS------GKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTA 360

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY  L+   C  ++  +A+ +F EM  QGV P++V+F+ ++  L KNG +D+A +    M
Sbjct: 361 TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDM 420

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              G+ PD  +Y  L+ GFC  G ++ A ++   M   GC+ DV +Y  ++NG CK K +
Sbjct: 421 KNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKML 480

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A  L++EM  +G+ P   T+ T
Sbjct: 481 SEADELFTEMTERGVFPDFYTFTT 504



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 140/286 (48%), Gaps = 6/286 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N +   L K K       LF  +   G+FPD YT+  LIN + K G ++    +  
Sbjct: 464 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 523

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +++    PD VT+ +LI G C  S + +   L+  + +    P+  +Y  LING C  G
Sbjct: 524 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 583

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L++EM     E  +      IT +TI  G C+ G   KA E    M  + I P
Sbjct: 584 CVSEAFRLWDEMVEKGFEATI------ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVP 637

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D +TY +LI GF    + + A  L  +M + G+ P+V+T+NVI+N   + G+M EA  ++
Sbjct: 638 DGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIM 697

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             MI+ GV PD S Y +L++G      +  A  +   M   G + D
Sbjct: 698 LKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 126/256 (49%), Gaps = 6/256 (2%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           + + F  L++      ++ E    F  L++ G    +    +L+ GL + G   +A  ++
Sbjct: 183 NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 242

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
           +E+     +  V       T + + + LCK   ++  K     M+++ + PDVVTY +LI
Sbjct: 243 QEVVRSGVQVNVY------TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 296

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
             +C      EA  L   M  +G++P V T+N I+N LCK GK   A  +L+ M++IG+ 
Sbjct: 297 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 356

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD + YN L+   C    +  A+ +F  M S G + D+ S+  LI    KN  ++ AL  
Sbjct: 357 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 416

Query: 326 YSEMLSKGIRPTVVTY 341
           + +M + G+ P  V Y
Sbjct: 417 FRDMKNAGLAPDNVIY 432



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 2/148 (1%)

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NP  + +  L+R +  A    E    F  +  +G+  ++   N ++  L K G +D A  
Sbjct: 183 NP--LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWE 240

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + +++ GV+ +    N +++  C   ++   K     ME  G   DV +Y  LIN YC
Sbjct: 241 IYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC 300

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +   +E A  L   M  KG++P V TYN
Sbjct: 301 RQGLLEEAFELMDSMSGKGLKPCVFTYN 328



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 57/107 (53%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K ++ D   +L  ++ + GL PD+ TYN+++N F + GR+    ++
Sbjct: 637 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 696

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           + +++     PD  T+TSLI G   ++ + EA  +  ++   G  PD
Sbjct: 697 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 60/112 (53%)

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N + F++++    +  K+ E      ++   G+    +  N+L+ G    G V+ A E++
Sbjct: 183 NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 242

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  +G   +V++  I+IN  CKN++IE   S  S+M  KG+ P VVTYNT
Sbjct: 243 QEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNT 294


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 10/259 (3%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
           PD VTFT+L+ GLC E R+++A AL  ++   G +P    Y T+INGLC+ G T  ALNL
Sbjct: 8   PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNL 63

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
             +M   +       K   + Y+ I D LCK+G    A+ LF +M D+ I PDV+TY+ +
Sbjct: 64  LSKMEETH------IKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGM 117

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I  FC +  W +A+ L  +M+++ + P+VVTF+ ++N L K GK+ EA  +   M++ G+
Sbjct: 118 IDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGI 177

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            P    YN+++DGFC   R+N AK +  SM S  C  DV ++  LINGYCK K ++  + 
Sbjct: 178 FPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGME 237

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           ++ EM  +GI    VTY T
Sbjct: 238 IFCEMHRRGIVANTVTYTT 256



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 159/297 (53%), Gaps = 10/297 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PD+ T+  L+N  C  GRV     ++ R++     P    + ++I GLC       A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESA 60

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L +K+     K  V  Y  +I+ LC+ GH I A NLF EM +  G F     PD ITY
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHD-KGIF-----PDVITY 114

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S + D  C+ G    A++L   M +  INPDVVT+++LI         +EA+ ++ +M+ 
Sbjct: 115 SGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLR 174

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G+ P  +T+N +++  CK  ++++A R+L+ M      PD   ++TL++G+C   RV+ 
Sbjct: 175 RGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDN 234

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             E+F  M   G + +  +Y  LI+G+C+  +++ A  L + M+S G+ P  +T+ +
Sbjct: 235 GMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQS 291



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 155/325 (47%), Gaps = 10/325 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L         L+L  R+   G  P    Y  +IN  CKMG       +
Sbjct: 8   PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNL 63

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++  +      V + ++I  LC +   + A  LFT++   G  PDV TY+ +I+  CR
Sbjct: 64  LSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCR 123

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  L  +M            PD +T+S + + L KEG V +A+E++  M    I
Sbjct: 124 SGRWTDAEQLLRDMIERQ------INPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGI 177

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P  +TY S+I GFC  +  N+AK +   M  +   P+VVTF+ ++N  CK  ++D    
Sbjct: 178 FPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGME 237

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M + G+  +   Y TL+ GFC  G ++ A++L   M S+G   +  ++  ++   C
Sbjct: 238 IFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLC 297

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
             KE+  A ++  ++    + P +V
Sbjct: 298 SKKELRKAFAILEDLQKSEVCPRIV 322



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M++ G +P+VVTF  +MN LC  G++ +A  L++ M++ G +P    Y T+++G C  G 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              A  L   ME       V  Y  +I+  CK+     A +L++EM  KGI P V+TY+
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYS 115


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K +  D    L + +   GL P+L +YN++IN  C+ GR+     V
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFV 297

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +  ++ D VT+ +LIKG C E    +A  +  ++   G  P V TYT+LI+ +C+
Sbjct: 298 LTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCK 357

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A    ++M         +C P+  TY+T+ DG  ++G++++A  +  +M D   
Sbjct: 358 AGNMNRATEFLDQM-----RVRGLC-PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGF 411

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P VVTY +LI G C A    +A  +  +M ++G+ P+VV+++ +++  C++  +DEA R
Sbjct: 412 SPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALR 471

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M+  G++PD   Y++L+ GFC   R   A +LF  M   G   D F+Y  LIN YC
Sbjct: 472 VKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYC 531

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              +++ A+ L++EM+ KG+ P VVTY+
Sbjct: 532 MEGDLQKAIQLHNEMVEKGVLPDVVTYS 559



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 179/339 (52%), Gaps = 7/339 (2%)

Query: 6   YMLRMHPSPPPVCSFN-ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           ++ + H   P V S+N +L   +   ++     ++FK +    + P+++TYNILI  FC 
Sbjct: 158 HLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCL 217

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
            G +        R+ +    P+ VT+ +LI G C   +I +   L   +   G +P++ +
Sbjct: 218 AGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLIS 277

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  +INGLCR G       +  EM N  G        D +TY+T+  G CKEG   +A  
Sbjct: 278 YNVVINGLCREGRMKEISFVLTEM-NKRG-----YSLDEVTYNTLIKGYCKEGNFHQALV 331

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +  +M    ++P V+TYTSLI   C A + N A     +M  +G+ PN  T+  +++   
Sbjct: 332 MHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFS 391

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           + G M+EA R+L+ MI  G  P    YN L++G C+ G++  A  +   M+  G   DV 
Sbjct: 392 QKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVV 451

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           SY  +++G+C++ +++ AL +  +M++KGI+P  +TY++
Sbjct: 452 SYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSS 490



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 181/350 (51%), Gaps = 24/350 (6%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           MLR H   P V ++  L   + K  + +       ++   GL P+  TY  L++ F + G
Sbjct: 336 MLR-HGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            ++  + VL  ++ + F+P  VT+ +LI G C   ++++A A+   ++  G  PDV +Y+
Sbjct: 395 YMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYS 454

Query: 127 TLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           T+++G CR+     AL +  +M A G        KPD ITYS++  G C++    +A +L
Sbjct: 455 TVLSGFCRSYDVDEALRVKRKMVAKG-------IKPDTITYSSLIQGFCEQRRTKEACDL 507

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F +M    + PD  TYT+LI  +C   D  +A  L  EM+++GV P+VVT++V++N L K
Sbjct: 508 FDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNK 567

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMD---------------GFCLTGRVNRAKEL 290
             +  EA RLL  +      P    Y+TL++               GFC+ G +  A ++
Sbjct: 568 QARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV 627

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           F SM       D  +Y ++I+G+C+  +I  A SLY EM+  G     VT
Sbjct: 628 FESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVT 677



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 172/329 (52%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N++   L +      +  +   +N  G   D  TYN LI  +CK G      V+
Sbjct: 273 PNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVM 332

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +LR   +P  +T+TSLI  +C    +  A     ++R  G  P+  TYTTL++G  +
Sbjct: 333 HAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQ 392

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  + +EM + NG       P  +TY+ + +G C  G +  A  +   MK++ +
Sbjct: 393 KGYMNEAYRVLKEMID-NG-----FSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGL 446

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV+Y++++ GFC + D +EA  +  +M+ +G++P+ +T++ ++   C+  +  EA  
Sbjct: 447 TPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+++G+ PD   Y  L++ +C+ G + +A +L   M   G + DV +Y +LING  
Sbjct: 507 LFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLN 566

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K      A  L  ++  +   P+ VTY+T
Sbjct: 567 KQARTREAKRLLLKLFYEESVPSDVTYHT 595



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 164/311 (52%), Gaps = 7/311 (2%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR-VSPGFVVLGRILRSCFTPDAVTFTS 92
           D  LS+     + G  P + +YN +++   +  R +S    V   +L+S  +P+  T+  
Sbjct: 151 DKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNI 210

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LI+G C    +  A   F ++   GC P+V TY TLI+G C+         L   MA   
Sbjct: 211 LIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKG 270

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
            E      P+ I+Y+ + +GLC+EG + +   +  +M     + D VTY +LI+G+C   
Sbjct: 271 LE------PNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEG 324

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           ++++A  +  EM+  G+ P+V+T+  +++ +CK G M+ A+  L+ M   G+ P+   Y 
Sbjct: 325 NFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYT 384

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           TL+DGF   G +N A  +   M  NG    V +Y  LING+C   ++  A+++  +M  K
Sbjct: 385 TLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEK 444

Query: 333 GIRPTVVTYNT 343
           G+ P VV+Y+T
Sbjct: 445 GLTPDVVSYST 455



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 146/336 (43%), Gaps = 60/336 (17%)

Query: 15  PPVCSFNILFG--CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P V ++N L    C+A  K  D + ++ + +   GL PD+ +Y+ +++ FC+   V    
Sbjct: 413 PSVVTYNALINGHCIA-GKMVDAI-AVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEAL 470

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V  +++     PD +T++SLI+G C + R  EA  LF ++   G  PD FTYT LIN  
Sbjct: 471 RVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAY 530

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL------------------- 173
           C  G    A+ L  EM     E GV+  PD +TYS + +GL                   
Sbjct: 531 CMEGDLQKAIQLHNEMV----EKGVL--PDVVTYSVLINGLNKQARTREAKRLLLKLFYE 584

Query: 174 -------------------------------CKEGFVDKAKELFLKMKDENINPDVVTYT 202
                                          C +G + +A ++F  M ++N  PD   Y 
Sbjct: 585 ESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYN 644

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
            +I G C   D  +A  L+ EM+  G   + VT   ++  L K GK++E + ++  +++ 
Sbjct: 645 VMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRS 704

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
               +A     L++     G ++   ++   M  +G
Sbjct: 705 CELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDG 740



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 36/143 (25%)

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD------------------- 276
           F++++    +   +D+A  ++ L    G  P    YN ++D                   
Sbjct: 137 FDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM 196

Query: 277 -----------------GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
                            GFCL G ++ A   F  ME  GC+ +V +Y  LI+GYCK ++I
Sbjct: 197 LQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKI 256

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
           +    L   M  KG+ P +++YN
Sbjct: 257 DDGFELLRSMALKGLEPNLISYN 279


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/259 (40%), Positives = 155/259 (59%), Gaps = 10/259 (3%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
           PD VTFT+L+ GLC E R+++A AL  ++   G +P    Y T+INGLC+ G T  ALNL
Sbjct: 8   PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNL 63

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
             +M   +       K   + Y+ I D LCK+G    A+ LF +M D+ I PDV+TY+ +
Sbjct: 64  LSKMEETH------IKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGM 117

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I  FC +  W +A+ L  +M+++ + P+VVTF+ ++N L K GK+ EA  +   M++ G+
Sbjct: 118 IDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGI 177

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            P    YN+++DGFC   R+N AK +  SM S  C  DV ++  LINGYCK K ++  + 
Sbjct: 178 FPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGME 237

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           ++ EM  +GI    VTY T
Sbjct: 238 IFCEMHRRGIVANTVTYTT 256



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 159/297 (53%), Gaps = 10/297 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PD+ T+  L+N  C  GRV     ++ R++     P    + ++I GLC       A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESA 60

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L +K+     K  V  Y  +I+ LC+ GH I A NLF EM +  G F     PD ITY
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHD-KGIF-----PDVITY 114

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S + D  C+ G    A++L   M +  INPDVVT+++LI         +EA+ ++ +M+ 
Sbjct: 115 SGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLR 174

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G+ P  +T+N +++  CK  ++++A R+L+ M      PD   ++TL++G+C   RV+ 
Sbjct: 175 RGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDN 234

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             E+F  M   G + +  +Y  LI+G+C+  +++ A  L + M+S G+ P  +T+ +
Sbjct: 235 GMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQS 291



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 10/315 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L         L+L  R+   G  P    Y  +IN  CKMG       +
Sbjct: 8   PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNL 63

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++  +      V + ++I  LC +   + A  LFT++   G  PDV TY+ +I+  CR
Sbjct: 64  LSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCR 123

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  L  +M            PD +T+S + + L KEG V +A+E++  M    I
Sbjct: 124 SGRWTDAEQLLRDMIERQ------INPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGI 177

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P  +TY S+I GFC  +  N+AK +   M  +   P+VVTF+ ++N  CK  ++D    
Sbjct: 178 FPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGME 237

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M + G+  +   Y TL+ GFC  G ++ A++L   M S+G   +  ++  ++   C
Sbjct: 238 IFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLC 297

Query: 315 KNKEIEGALSLYSEM 329
             KE+  A ++  ++
Sbjct: 298 SKKELRKAFAILEDL 312



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M++ G +P+VVTF  +MN LC  G++ +A  L++ M++ G +P    Y T+++G C  G 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              A  L   ME       V  Y  +I+  CK+     A +L++EM  KGI P V+TY+
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYS 115



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 1/153 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I+  MLR    P  + ++N +     K    +    +   + S    PD+ T++ LIN +
Sbjct: 168 IYGDMLRRGIFPTTI-TYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGY 226

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  RV  G  +   + R     + VT+T+LI G C    +  A  L   + + G  P+ 
Sbjct: 227 CKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNY 286

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
            T+ +++  LC       A  + E++    G  
Sbjct: 287 ITFQSMLASLCSKKELRKAFAILEDLQKSEGHH 319


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 186/344 (54%), Gaps = 13/344 (3%)

Query: 3   IFDYMLRMHPSP---PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           IFD M    PS    P + SF+ L G L+KN   D  L  F+ + + GL PD   Y ILI
Sbjct: 224 IFDEM----PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 279

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
             FC+ G +S    V   +L      D VT+ +++ GLC E  + EA  LFT++   G  
Sbjct: 280 GGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 339

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD +T+TTLING  + G+   A+ LFE M   N       KPD +TY+T+ DG CK   +
Sbjct: 340 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN------LKPDVVTYNTLIDGFCKGSEM 393

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +K  EL+  M    I P+ ++Y  LI G+C     +EA  L+ EM+++G +  ++T N I
Sbjct: 394 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTI 453

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   C+ G   +A   L  M+  G+ PD   YNTL++GF     ++RA  L   ME++G 
Sbjct: 454 VKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGL 513

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + DV +Y +++NG+ +   ++ A  +  +M+ +G+ P   TY +
Sbjct: 514 LPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTS 557



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 179/362 (49%), Gaps = 41/362 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V + NI+   L KN+  +   S    +   G+FPD+ TYN LIN +C+ G +   F ++ 
Sbjct: 97  VYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMD 156

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P   T+ ++I GLC   + + A  +  ++   G  PD  TY  L+   CR  
Sbjct: 157 SMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRND 216

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           + + A  +F+EM +     GVV  PD +++S +   L K G +D+A + F  MK+  + P
Sbjct: 217 NMMDAERIFDEMPSQ----GVV--PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAP 270

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC------------ 244
           D V YT LI GFC     +EA  +  EM++QG   +VVT+N I+N LC            
Sbjct: 271 DNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELF 330

Query: 245 -----------------------KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
                                  K+G M++A  L E+MIQ  ++PD   YNTL+DGFC  
Sbjct: 331 TEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKG 390

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             + +  EL+  M S     +  SYGILINGYC    +  A  L+ EM+ KG   T++T 
Sbjct: 391 SEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITC 450

Query: 342 NT 343
           NT
Sbjct: 451 NT 452



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 178/340 (52%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML++  SP    ++NIL     +N +      +F  + S G+ PDL +++ LI   
Sbjct: 189 VLDEMLKIGMSPD-TATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLL 247

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G +         +  +   PD V +T LI G C    + EA  +  ++   GC  DV
Sbjct: 248 SKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDV 307

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY T++NGLC+      A  LF EM     E GV   PD  T++T+ +G  K+G ++KA
Sbjct: 308 VTYNTILNGLCKEKMLSEADELFTEMT----ERGVF--PDFYTFTTLINGYSKDGNMNKA 361

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF  M   N+ PDVVTY +LI GFC  ++  +   L+ +M+ + + PN +++ +++N 
Sbjct: 362 VTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILING 421

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G + EA RL + M++ G        NT++ G+C  G   +A E   +M   G + D
Sbjct: 422 YCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPD 481

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  LING+ K + ++ A +L ++M + G+ P V+TYN
Sbjct: 482 GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYN 521



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K   Y     +   +  IG+ PD  TYNIL+   C+   +     +
Sbjct: 165 PCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERI 224

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD V+F++LI  L     + +A   F  ++  G  PD   YT LI G CR
Sbjct: 225 FDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCR 284

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL + +EM     E G  C  D +TY+TI +GLCKE  + +A ELF +M +  +
Sbjct: 285 NGVMSEALKVRDEML----EQG--CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGV 338

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  T+T+LI G+    + N+A  LF  M+ + ++P+VVT+N +++  CK  +M++ + 
Sbjct: 339 FPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNE 398

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   MI   + P+   Y  L++G+C  G V+ A  L+  M   G    + +   ++ GYC
Sbjct: 399 LWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYC 458

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +      A    S ML KGI P  +TYNT
Sbjct: 459 RAGNAVKADEFLSNMLLKGIVPDGITYNT 487



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 160/324 (49%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++L     + +        F+ L S GL   +   N L+    K+G V   + +   ++
Sbjct: 30  FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 89

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           RS    +  T   +I  LC   +I    +  + +   G  PDV TY TLIN  CR G   
Sbjct: 90  RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 149

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L + M+      G   KP   TY+ I +GLCK G   +AK +  +M    ++PD  
Sbjct: 150 EAFELMDSMS------GKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTA 203

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY  L+   C  ++  +A+ +F EM  QGV P++V+F+ ++  L KNG +D+A +    M
Sbjct: 204 TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDM 263

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              G+ PD  +Y  L+ GFC  G ++ A ++   M   GC+ DV +Y  ++NG CK K +
Sbjct: 264 KNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKML 323

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A  L++EM  +G+ P   T+ T
Sbjct: 324 SEADELFTEMTERGVFPDFYTFTT 347



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 140/286 (48%), Gaps = 6/286 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N +   L K K       LF  +   G+FPD YT+  LIN + K G ++    +  
Sbjct: 307 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 366

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +++    PD VT+ +LI G C  S + +   L+  + +    P+  +Y  LING C  G
Sbjct: 367 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 426

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L++EM     E  +      IT +TI  G C+ G   KA E    M  + I P
Sbjct: 427 CVSEAFRLWDEMVEKGFEATI------ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVP 480

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D +TY +LI GF    + + A  L  +M + G+ P+V+T+NVI+N   + G+M EA  ++
Sbjct: 481 DGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIM 540

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             MI+ GV PD S Y +L++G      +  A  +   M   G + D
Sbjct: 541 LKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 126/256 (49%), Gaps = 6/256 (2%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           + + F  L++      ++ E    F  L++ G    +    +L+ GL + G   +A  ++
Sbjct: 26  NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 85

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
           +E+     +  V       T + + + LCK   ++  K     M+++ + PDVVTY +LI
Sbjct: 86  QEVVRSGVQVNVY------TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 139

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
             +C      EA  L   M  +G++P V T+N I+N LCK GK   A  +L+ M++IG+ 
Sbjct: 140 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 199

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD + YN L+   C    +  A+ +F  M S G + D+ S+  LI    KN  ++ AL  
Sbjct: 200 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 259

Query: 326 YSEMLSKGIRPTVVTY 341
           + +M + G+ P  V Y
Sbjct: 260 FRDMKNAGLAPDNVIY 275



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 2/149 (1%)

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NP  + +  L+R +  A    E    F  +  +G+  ++   N ++  L K G +D A  
Sbjct: 26  NP--LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWE 83

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + +++ GV+ +    N +++  C   ++   K     ME  G   DV +Y  LIN YC
Sbjct: 84  IYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC 143

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   +E A  L   M  KG++P V TYN 
Sbjct: 144 RQGLLEEAFELMDSMSGKGLKPCVFTYNA 172



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 57/107 (53%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K ++ D   +L  ++ + GL PD+ TYN+++N F + GR+    ++
Sbjct: 480 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 539

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           + +++     PD  T+TSLI G   ++ + EA  +  ++   G  PD
Sbjct: 540 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 187/359 (52%), Gaps = 31/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + ++N +   L K +  D   +  +++ +  + P+ +TYN LI  +   G+      
Sbjct: 251 PPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVR 310

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   + R    PD VT + L+  LC   +I EA  +F  +   G  PDVF+Y  ++NG  
Sbjct: 311 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA 370

Query: 134 RTGHTIVALNLFEEMANGNG------EFGVV------------------------CKPDA 163
             G  +   +LF+ M  G+G       F V+                         KPD 
Sbjct: 371 TKGCLVDMTDLFDLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDV 429

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY T+   LC+ G +D A E F +M D+ + PD   Y  LI+GFC      +AK L  E
Sbjct: 430 VTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISE 489

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           +M+ G+  ++V F+ I+N LCK G++ +A  + +L + +G+ PDA VY+ LMDG+CL G+
Sbjct: 490 IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGK 549

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +A  +F +M S G   +V  Y  L+NGYCK   I+  LSL+ EML +GI+P+ + Y+
Sbjct: 550 MEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 608



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 159/313 (50%), Gaps = 10/313 (3%)

Query: 36  VLSLFKRLNSIG-----LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
            ++LF R  S       L P  +TY IL++C  +  R        G++LR+    + +  
Sbjct: 90  AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIA 149

Query: 91  TSLIKGLCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
             L++G C   R  EA   L  +    GC PDVF+Y+ L+  LC  G +  A +L   MA
Sbjct: 150 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 209

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
            G    G VC P+ + Y+T+ DG  KEG V+KA +LF +M    I PD+VTY S++   C
Sbjct: 210 EG----GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALC 265

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            A   ++A+    +M+++ V PN  T+N ++      G+  EA R+ + M +  + PD  
Sbjct: 266 KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVV 325

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
             + LM   C  G++  A+++F +M   G   DVFSY I++NGY     +     L+  M
Sbjct: 326 TLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLM 385

Query: 330 LSKGIRPTVVTYN 342
           L  GI P   T+N
Sbjct: 386 LGDGIAPDFYTFN 398



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M  M    P V S+NI+    A       +  LF  +   G+ PD YT+N+LI  +
Sbjct: 346 VFDTMA-MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 404

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +    ++   +      PD VT+ ++I  LC   ++ +A   F ++   G  PD 
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 464

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           + Y  LI G C  G  + A  L  E+ N           D + +S+I + LCK G V  A
Sbjct: 465 YAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL------DIVFFSSIINNLCKLGRVMDA 518

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F    +  ++PD V Y+ L+ G+C      +A  +F  M+  G++PNVV +  ++N 
Sbjct: 519 QNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNG 578

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G++DE   L   M+Q G++P   +Y+ ++DG    GR   AK  F  M  +G   D
Sbjct: 579 YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMD 638

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y I++ G  KN+  + A+ L+ E+ +  ++  ++T NT
Sbjct: 639 ICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 679



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 162/334 (48%), Gaps = 7/334 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ M R H   P V ++  +   L +    D  +  F ++   G+ PD Y YN LI  F
Sbjct: 416 IFNEM-RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 474

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +     ++  I+ +    D V F+S+I  LC   R+M+A  +F      G  PD 
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 534

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+ L++G C  G    AL +F+ M +   E      P+ + Y T+ +G CK G +D+ 
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE------PNVVVYCTLVNGYCKIGRIDEG 588

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M    I P  + Y+ +I G   A     AK  F EM + G+  ++ T+N+++  
Sbjct: 589 LSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRG 648

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L KN   DEA  L + +  + V+ +    NT++DG   T RV  AK+LF S+  +  +  
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 708

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           V +Y I+I    K   +E A  ++S M + G  P
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 742



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 166/335 (49%), Gaps = 6/335 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R H   P V + ++L G L K         +F  +   G  PD+++YNI++N +   G 
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +   +L     PD  TF  LIK       + +A  +F ++R  G KPDV TY T
Sbjct: 375 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 434

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I  LCR G    A+  F +M +     GV   PD   Y+ +  G C  G + KAKEL  
Sbjct: 435 VIAALCRIGKMDDAMEKFNQMIDQ----GVA--PDKYAYNCLIQGFCTHGSLLKAKELIS 488

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++ +  ++ D+V ++S+I   C      +A+ +F   ++ G+ P+ V ++++M+  C  G
Sbjct: 489 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVG 548

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           KM++A R+ + M+  G+ P+  VY TL++G+C  GR++    LF  M   G       Y 
Sbjct: 549 KMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 608

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I+I+G  +      A   + EM   GI   + TYN
Sbjct: 609 IIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYN 643



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 166/342 (48%), Gaps = 15/342 (4%)

Query: 10  MHPSP-----PPVCSFNILFGCL---AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +H +P     P V S++IL   L    K+   D +L +     ++   P++  YN +I+ 
Sbjct: 170 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDG 228

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           F K G V+    +   +++    PD VT+ S++  LC    + +A A   ++      P+
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 288

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +TY  LI G   TG    A+ +F+EM   +        PD +T S +   LCK G + +
Sbjct: 289 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS------ILPDVVTLSMLMGSLCKYGKIKE 342

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+++F  M  +  NPDV +Y  ++ G+       +   LF  M+  G+ P+  TFNV++ 
Sbjct: 343 ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIK 402

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
                G +D+A  +   M   GV+PD   Y T++   C  G+++ A E F  M   G   
Sbjct: 403 AYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAP 462

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D ++Y  LI G+C +  +  A  L SE+++ G+   +V +++
Sbjct: 463 DKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 504



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 108/213 (50%), Gaps = 5/213 (2%)

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           CR+G  + A+ LF   A+   +   V  P + TY+ + D   +    + A   F ++   
Sbjct: 83  CRSGPAL-AVALFNRAAS-RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRT 140

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDE 251
            +  +++    L+ GFC A   +EA  + +    + G  P+V ++++++  LC  GK  +
Sbjct: 141 GLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 200

Query: 252 ASRLLELMIQIGV--RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           A  LL +M + G    P+   YNT++DGF   G VN+A +LF  M   G   D+ +Y  +
Sbjct: 201 ADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSV 260

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  CK + ++ A +   +M++K + P   TYN
Sbjct: 261 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYN 293



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 7/254 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+     P  V    ++ G   K    D  LSLF+ +   G+ P    Y+I+I+  
Sbjct: 556 VFDAMVSAGIEPNVVVYCTLVNG-YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 614

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + GR  P  V    +  S    D  T+  +++GL       EA  LF +LRA   K ++
Sbjct: 615 FQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 674

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T  T+I+G+ +T     A +LF  ++           P  +TYS +   L KEG V++A
Sbjct: 675 ITLNTMIDGMFQTRRVEEAKDLFASISRSR------LVPSVVTYSIMITNLIKEGLVEEA 728

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +++F  M++    P+      ++R     N+   A     ++ ++      +T  ++++ 
Sbjct: 729 EDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDL 788

Query: 243 LCKNGKMDEASRLL 256
               G   E  R L
Sbjct: 789 FSSKGTCREHIRFL 802


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 187/359 (52%), Gaps = 31/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + ++N +   L K +  D   +  +++ +  + P+ +TYN LI  +   G+      
Sbjct: 264 PPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVR 323

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   + R    PD VT + L+  LC   +I EA  +F  +   G  PDVF+Y  ++NG  
Sbjct: 324 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA 383

Query: 134 RTGHTIVALNLFEEMANGNG------EFGVV------------------------CKPDA 163
             G  +   +LF+ M  G+G       F V+                         KPD 
Sbjct: 384 TKGCLVDMTDLFDLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDV 442

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY T+   LC+ G +D A E F +M D+ + PD   Y  LI+GFC      +AK L  E
Sbjct: 443 VTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISE 502

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           +M+ G+  ++V F+ I+N LCK G++ +A  + +L + +G+ PDA VY+ LMDG+CL G+
Sbjct: 503 IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGK 562

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +A  +F +M S G   +V  Y  L+NGYCK   I+  LSL+ EML +GI+P+ + Y+
Sbjct: 563 MEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 621



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 159/313 (50%), Gaps = 10/313 (3%)

Query: 36  VLSLFKRLNSIG-----LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
            ++LF R  S       L P  +TY IL++C  +  R        G++LR+    + +  
Sbjct: 103 AVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIA 162

Query: 91  TSLIKGLCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
             L++G C   R  EA   L  +    GC PDVF+Y+ L+  LC  G +  A +L   MA
Sbjct: 163 NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMA 222

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
            G    G VC P+ + Y+T+ DG  KEG V+KA +LF +M    I PD+VTY S++   C
Sbjct: 223 EG----GAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALC 278

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            A   ++A+    +M+++ V PN  T+N ++      G+  EA R+ + M +  + PD  
Sbjct: 279 KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVV 338

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
             + LM   C  G++  A+++F +M   G   DVFSY I++NGY     +     L+  M
Sbjct: 339 TLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLM 398

Query: 330 LSKGIRPTVVTYN 342
           L  GI P   T+N
Sbjct: 399 LGDGIAPDFYTFN 411



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 169/341 (49%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M  M    P V S+NI+    A       +  LF  +   G+ PD YT+N+LI  +
Sbjct: 359 VFDTMA-MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 417

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +    ++   +      PD VT+ ++I  LC   ++ +A   F ++   G  PD 
Sbjct: 418 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 477

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           + Y  LI G C  G  + A  L  E+ N           D + +S+I + LCK G V  A
Sbjct: 478 YAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL------DIVFFSSIINNLCKLGRVMDA 531

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F    +  ++PD V Y+ L+ G+C      +A  +F  M+  G++PNVV +  ++N 
Sbjct: 532 QNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNG 591

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G++DE   L   M+Q G++P   +Y+ ++DG    GR   AK  F  M  +G   D
Sbjct: 592 YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMD 651

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y I++ G  KN+  + A+ L+ E+ +  ++  ++T NT
Sbjct: 652 ICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 692



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 163/334 (48%), Gaps = 7/334 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ M R H   P V ++  +   L +    D  +  F ++   G+ PD Y YN LI  F
Sbjct: 429 IFNEM-RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 487

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +     ++  I+ +    D V F+S+I  LC   R+M+A  +F      G  PD 
Sbjct: 488 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 547

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+ L++G C  G    AL +F+ M +   E      P+ + Y T+ +G CK G +D+ 
Sbjct: 548 VVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE------PNVVVYCTLVNGYCKIGRIDEG 601

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M    I P  + Y+ +I G   A     AK  F EM + G+  ++ T+N+++  
Sbjct: 602 LSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 661

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L KN   DEA  L + +  + V+ +    NT++DG   T RV  AK+LF S+  +  + +
Sbjct: 662 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPN 721

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           V +Y I+I    K   +E A  ++S M + G  P
Sbjct: 722 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 755



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 166/335 (49%), Gaps = 6/335 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R H   P V + ++L G L K         +F  +   G  PD+++YNI++N +   G 
Sbjct: 328 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 387

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +   +L     PD  TF  LIK       + +A  +F ++R  G KPDV TY T
Sbjct: 388 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 447

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I  LCR G    A+  F +M +     GV   PD   Y+ +  G C  G + KAKEL  
Sbjct: 448 VIAALCRIGKMDDAMEKFNQMIDQ----GVA--PDKYAYNCLIQGFCTHGSLLKAKELIS 501

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++ +  ++ D+V ++S+I   C      +A+ +F   ++ G+ P+ V ++++M+  C  G
Sbjct: 502 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVG 561

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           KM++A R+ + M+  G+ P+  VY TL++G+C  GR++    LF  M   G       Y 
Sbjct: 562 KMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 621

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I+I+G  +      A   + EM   GI   + TYN
Sbjct: 622 IIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYN 656



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 166/342 (48%), Gaps = 15/342 (4%)

Query: 10  MHPSP-----PPVCSFNILFGCL---AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +H +P     P V S++IL   L    K+   D +L +     ++   P++  YN +I+ 
Sbjct: 183 LHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDG 241

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           F K G V+    +   +++    PD VT+ S++  LC    + +A A   ++      P+
Sbjct: 242 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 301

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +TY  LI G   TG    A+ +F+EM   +        PD +T S +   LCK G + +
Sbjct: 302 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS------ILPDVVTLSMLMGSLCKYGKIKE 355

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+++F  M  +  NPDV +Y  ++ G+       +   LF  M+  G+ P+  TFNV++ 
Sbjct: 356 ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIK 415

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
                G +D+A  +   M   GV+PD   Y T++   C  G+++ A E F  M   G   
Sbjct: 416 AYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAP 475

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D ++Y  LI G+C +  +  A  L SE+++ G+   +V +++
Sbjct: 476 DKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 517



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 108/213 (50%), Gaps = 5/213 (2%)

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           CR+G  + A+ LF   A+   +   V  P + TY+ + D   +    + A   F ++   
Sbjct: 96  CRSGPAL-AVALFNRAAS-RAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRT 153

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDE 251
            +  +++    L+ GFC A   +EA  + +    + G  P+V ++++++  LC  GK  +
Sbjct: 154 GLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 213

Query: 252 ASRLLELMIQIGV--RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           A  LL +M + G    P+   YNT++DGF   G VN+A +LF  M   G   D+ +Y  +
Sbjct: 214 ADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSV 273

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  CK + ++ A +   +M++K + P   TYN
Sbjct: 274 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYN 306



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 112/254 (44%), Gaps = 7/254 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+     P  V    ++ G   K    D  LSLF+ +   G+ P    Y+I+I+  
Sbjct: 569 VFDAMVSAGIEPNVVVYCTLVNG-YCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 627

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + GR  P  +    +  S    D  T+  +++GL       EA  LF +LRA   K ++
Sbjct: 628 FQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 687

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T  T+I+G+ +T     A +LF  ++           P+ +TYS +   L KEG V++A
Sbjct: 688 ITLNTMIDGMFQTRRVEEAKDLFASISRSR------LVPNVVTYSIMITNLIKEGLVEEA 741

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +++F  M++    P+      ++R     N+   A     ++ ++      +T  ++++ 
Sbjct: 742 EDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDL 801

Query: 243 LCKNGKMDEASRLL 256
               G   E  R L
Sbjct: 802 FSSKGTCREQIRFL 815


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 185/355 (52%), Gaps = 19/355 (5%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +L+  P  P V  FN L   L + +  D    LF  +   G   D+ TYNIL+   CK+ 
Sbjct: 300 LLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLR 359

Query: 67  RVSPGF--VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF-GCKPDVF 123
           R+   +  V L R    C +P+ VTF++LI+GLC   R+ +A  ++ ++ A  G  P+ F
Sbjct: 360 RIPEAYRHVELMRRTEGC-SPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRF 418

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV---------------VCKPDAITYST 168
           TY  L+ GLC+ G +      FE+M                        VC+P  +TY+T
Sbjct: 419 TYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNT 478

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +  GL K G V  A  L   M +  ++PDV+T+ S++ G C      +A  +F   +++G
Sbjct: 479 LVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 538

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
            +PNVVT++ +++ L K  KMDEA +LL  M+++G R +   Y+T++DG    GR+  A 
Sbjct: 539 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAV 598

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +   M   GC+ D  +Y  LI+G+ K + +  A+ L  EML  G  P+VVTY T
Sbjct: 599 VVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTT 653



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 171/328 (52%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN +   L K +      ++FKR    G  P++ TY+ LI+   KM ++     +
Sbjct: 506 PDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQL 565

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++      + VT+++++ GL    R+ +A  +  ++R  GC PD  TY TLI+G  +
Sbjct: 566 LAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFK 625

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ L  EM            P  +TY+T+  GLC+ G  D+A E+   M     
Sbjct: 626 RQRLREAVGLLREMLEAG------FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGC 679

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMM-DQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            P+ +TY+S++ G C A    EA   F +M  D+ V P+V+ ++ +++ LCK G++DEA 
Sbjct: 680 APNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAY 739

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             LE MI+ G  PD   ++ L++G C  GR++   ELF  M   GC  D+++Y  +IN Y
Sbjct: 740 EFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAY 799

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           C   E   A +L  EM + GI    VT+
Sbjct: 800 CLKGEFSAAYALLEEMKTHGIAKNTVTH 827



 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 179/330 (54%), Gaps = 9/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L+K    D  L L  ++  +G   +  TY+ +++   K+GR+    VV
Sbjct: 541 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 600

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++  +   PDAVT+ +LI G     R+ EA  L  ++   G  P V TYTTL +GLCR
Sbjct: 601 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 660

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDEN 193
           +G    A+ + + MA         C P+AITYS+I DGLCK G V +A   F KM +DE 
Sbjct: 661 SGRFDEAVEILDYMAARG------CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 714

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P V+ Y++LI G C A   +EA      M+  G  P+VVTF++++N LC  G++D   
Sbjct: 715 VAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGL 774

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   M + G + D   YN +++ +CL G  + A  L   M+++G  ++  ++GI+I   
Sbjct: 775 ELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKAL 834

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C N  I+ A+S Y   + +  R   ++YNT
Sbjct: 835 CGNDRIDEAVS-YFHSIPEDCRDE-ISYNT 862



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 173/391 (44%), Gaps = 74/391 (18%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
            ++ G L   +  D V+ L +++   G  PD  TYN LI+ F K  R+     +L  +L 
Sbjct: 583 TVVDGLLKVGRMEDAVVVL-RQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLE 641

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
           + F P  VT+T+L  GLC   R  EA  +   + A GC P+  TY+++++GLC+ G    
Sbjct: 642 AGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTE 701

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL  FE+MA        V  P  I YS + DGLCK G +D+A E   +M      PDVVT
Sbjct: 702 ALGYFEKMARDE-----VVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVT 756

Query: 201 YTSLIRGFCYAN-----------------------------------DWNEAKCLFIEMM 225
           ++ LI G C A                                    +++ A  L  EM 
Sbjct: 757 FSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMK 816

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEA--------------------------SR----- 254
             G+  N VT  +++  LC N ++DEA                          SR     
Sbjct: 817 THGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQA 876

Query: 255 --LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             LL  M+  G  PDA  Y T+MDG    G    A +L   M S G   D+ +Y I+I+G
Sbjct: 877 LELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISG 936

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             K K++  A   + EML K ++P  + Y++
Sbjct: 937 LSKAKQLPLACDYFEEMLRKNLKPDAIVYSS 967



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 169/342 (49%), Gaps = 16/342 (4%)

Query: 4   FDYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           F  + RM  +  PP + +F ++   L K    +    +   +   G  PD+  + +L++ 
Sbjct: 91  FSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHA 150

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C++GRV   +    ++L   FTPDAVT+ +++ GL    R+  A  +   L      P 
Sbjct: 151 LCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPT 210

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           VFT+T  ++GL + G+   A   F+ M     + GV   P+ +TY  + DGLCK G +D 
Sbjct: 211 VFTFTIAVDGLSKAGNLTGAYEFFDSMP----QTGV--SPNTVTYDALIDGLCKAGKLDI 264

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L   ++D+N    +  ++SL+ G C A+   EA  L   M      PNVV FN +MN
Sbjct: 265 ALGL---LRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAM---PCVPNVVCFNSLMN 318

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA-KELFVSMESNGCM 300
            LC+  ++DEA  L ++M + G   D   YN L+ G C   R+  A + + +   + GC 
Sbjct: 319 GLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCS 378

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLS-KGIRPTVVTY 341
            +V ++  LI G C    +  A  +Y  M++ +GI P   TY
Sbjct: 379 PNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTY 420



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 173/382 (45%), Gaps = 56/382 (14%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV---- 68
           S P V +F I    L+K  +       F  +   G+ P+  TY+ LI+  CK G++    
Sbjct: 207 SSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIAL 266

Query: 69  --------SPGFVVLGRILRSC-----------------FTPDAVTFTSLIKGLCAESRI 103
                     G      +L                      P+ V F SL+ GLC   R+
Sbjct: 267 GLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRV 326

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
            EA  LF  ++  GC  DV TY  L+ GLC+      A    E M    G     C P+ 
Sbjct: 327 DEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEG-----CSPNV 381

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
           +T+ST+  GLC  G V++A E++ +M   E I+P+  TY  L+ G C A D    +  F 
Sbjct: 382 VTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFE 441

Query: 223 EMMD---------------------QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           +M++                     Q  +P +VT+N ++  L K+G + +A  LLE MI+
Sbjct: 442 QMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIE 501

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G+ PD   +N+++DG C   R+  A  +F      GC  +V +Y  LI+G  K  +++ 
Sbjct: 502 SGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDE 561

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           AL L ++M+  G R   VTY+T
Sbjct: 562 ALQLLAKMVELGCRANTVTYST 583



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 174/360 (48%), Gaps = 38/360 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L ++   D    L + +   G  P+  TYN L+N     GR    F +
Sbjct: 34  PTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSL 93

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+  +   P+ +TF  +IKGLC E  I  A  +  ++   G  PDV  +T L++ LC 
Sbjct: 94  LERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCE 153

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A   F+++        +   PDA+TY+T+ DGL K G ++ A  +   + +   
Sbjct: 154 LGRVDEAWFFFQQV------LLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFS 207

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD---- 250
           +P V T+T  + G   A +   A   F  M   GV PN VT++ +++ LCK GK+D    
Sbjct: 208 SPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALG 267

Query: 251 ----------------------EASRL---LELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
                                 +A RL   ++L+  +   P+   +N+LM+G C   RV+
Sbjct: 268 LLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVD 327

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML--SKGIRPTVVTYNT 343
            A ELF  M+ +GC  DV +Y IL+ G CK + I  A   + E++  ++G  P VVT++T
Sbjct: 328 EAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYR-HVELMRRTEGCSPNVVTFST 386



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 145/282 (51%), Gaps = 6/282 (2%)

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
           + TYN+LIN  CK GRV   F    + ++  F P  VT++++I GLC ++ + +   L  
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
           ++   GC P+  TY TL+N L   G    A +L E MA  NG     C P+ IT+  I  
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMA-ANG-----CPPELITFGLIIK 114

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           GLCKEG ++ A  +  +M D    PDV  +T L+   C     +EA   F +++  G  P
Sbjct: 115 GLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTP 174

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           + VT+N +++ L K G+++ A  +L+L+ +    P    +   +DG    G +  A E F
Sbjct: 175 DAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFF 234

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
            SM   G   +  +Y  LI+G CK  +++ AL L  +  S+ 
Sbjct: 235 DSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQA 276



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 177/396 (44%), Gaps = 64/396 (16%)

Query: 5   DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI-GLFPDLYTYNILINCFC 63
           + M R     P V +F+ L   L      +    +++R+ ++ G+ P+ +TY  L+   C
Sbjct: 369 ELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLC 428

Query: 64  KMG---RVSPGF-VVLGRILRSCFT-----------------PDAVTFTSLIKGLCAESR 102
           K G   R+   F  +L R  RS  +                 P  VT+ +L+ GL     
Sbjct: 429 KAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGM 488

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + +A  L   +   G  PDV T+ ++++GLC+    + A N+F+            C+P+
Sbjct: 489 VRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG------CRPN 542

Query: 163 AITYSTITDGLCKEGFVDKAKELFLK---------------------------------- 188
            +TYST+ DGL K   +D+A +L  K                                  
Sbjct: 543 VVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLR 602

Query: 189 -MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M+D    PD VTY +LI GF       EA  L  EM++ G  P+VVT+  + + LC++G
Sbjct: 603 QMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSG 662

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR-DVFSY 306
           + DEA  +L+ M   G  P+A  Y++++DG C  GRV  A   F  M  +  +   V +Y
Sbjct: 663 RFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAY 722

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             LI+G CK   I+ A      M+  G  P VVT++
Sbjct: 723 SALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFS 758



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 135/256 (52%), Gaps = 6/256 (2%)

Query: 88  VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           VT+  LI GLC   R+ +A   F K   FG +P V TY+T+I+GLCR         L EE
Sbjct: 2   VTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           MA G G     C P+A+TY+T+ + L  +G   +A  L  +M      P+++T+  +I+G
Sbjct: 62  MA-GRG-----CAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKG 115

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C   +   A  +  EM+D+G  P+V    V+++ LC+ G++DEA    + ++ IG  PD
Sbjct: 116 LCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPD 175

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
           A  YNT++DG    GR+  A  +   +  +     VF++ I ++G  K   + GA   + 
Sbjct: 176 AVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFD 235

Query: 328 EMLSKGIRPTVVTYNT 343
            M   G+ P  VTY+ 
Sbjct: 236 SMPQTGVSPNTVTYDA 251



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 157/328 (47%), Gaps = 13/328 (3%)

Query: 4    FDYMLRMHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            ++++ RM  +   P V +F+IL   L      DT L LF  +   G   D+Y YN +IN 
Sbjct: 739  YEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINA 798

Query: 62   FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            +C  G  S  + +L  +       + VT   +IK LC   RI EA + F  +    C+ D
Sbjct: 799  YCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPE-DCR-D 856

Query: 122  VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
              +Y TLI  L  +  +  AL L   M    G       PDA  Y T+ DGL K G  + 
Sbjct: 857  EISYNTLITSLVASRRSEQALELLRAMVADGG------SPDACNYMTVMDGLFKAGSPEV 910

Query: 182  AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
            A +L  +M+    +PD+ TYT +I G   A     A   F EM+ + ++P+ + ++ +++
Sbjct: 911  AAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLID 970

Query: 242  ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
              CK  K+D+A +LL      G+ P  ++Y+T++D  C     ++A E+   M+S  C  
Sbjct: 971  AFCKADKVDDAWKLLR---SSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEP 1027

Query: 302  DVFSYGILINGYCKNKEIEGALSLYSEM 329
             +  +  L   Y     ++ A+ L +++
Sbjct: 1028 GIHIWTSLATAYVAEGRVDEAVKLVNDL 1055



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 157/341 (46%), Gaps = 13/341 (3%)

Query: 4    FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
            F+ M R     P V +++ L   L K    D      +R+   G  PD+ T++ILIN  C
Sbjct: 706  FEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLC 765

Query: 64   KMGRVSPGFVVL-GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              GR+  G  +  G   R C   D   + ++I   C +     A AL  +++  G   + 
Sbjct: 766  DAGRIDTGLELFCGMAERGC-KADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNT 824

Query: 123  FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             T+  +I  LC       A++ F  +          C+ D I+Y+T+   L      ++A
Sbjct: 825  VTHGIVIKALCGNDRIDEAVSYFHSIPED-------CR-DEISYNTLITSLVASRRSEQA 876

Query: 183  KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             EL   M  +  +PD   Y +++ G   A     A  L  EM  +G  P++ T+ ++++ 
Sbjct: 877  LELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISG 936

Query: 243  LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            L K  ++  A    E M++  ++PDA VY++L+D FC   +V+ A +L   + S+G    
Sbjct: 937  LSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKL---LRSSGIEPT 993

Query: 303  VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  Y  +++  CKN+  + AL +  EM SK   P +  + +
Sbjct: 994  ITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTS 1034



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 80/141 (56%)

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           +VTY  LI G C A    +A   F + +  G +P VVT++ +++ LC++ ++D+  +LLE
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M   G  P+A  YNTL++     GR   A  L   M +NGC  ++ ++G++I G CK  
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 318 EIEGALSLYSEMLSKGIRPTV 338
           EIE A  +  EM+ +G  P V
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDV 141


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 182/340 (53%), Gaps = 10/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D MLR     P V ++ +L   + +N  ++  +++   + + G  P++ TYN++IN  
Sbjct: 165 LLDDMLR-RGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGM 223

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GRV     +L R+    F PD V++T+L+KGLCA  R  +   LF ++    C P+ 
Sbjct: 224 CREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNE 283

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  LI   CR G    A+ + E+M     E G  C  +    + + + +CK+G VD A
Sbjct: 284 VTFDMLIRFFCRGGMVERAIQVLEQMT----EHG--CATNTTLCNIVINSICKQGRVDDA 337

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L   M     NPD ++YT++++G C A  W++AK L  EM+     PN VTFN  +  
Sbjct: 338 FKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICI 397

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+ G +++A  L+E M + G       YN L++GFC+ G ++ A ELF SM    C  +
Sbjct: 398 LCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPN 454

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  L+ G C  + ++GA  L +EML     P VVT+N
Sbjct: 455 TITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFN 494



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 166/294 (56%), Gaps = 11/294 (3%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D++ YN L+  +C+ G +     ++G +      PDA T+T LI+ LC   R+ +A +L 
Sbjct: 110 DVFAYNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLL 166

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTI 169
             +   GC+P+V TYT L+  +CR      A+ + +EM A G       C P+ +TY+ I
Sbjct: 167 DDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKG-------CTPNIVTYNVI 219

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +G+C+EG VD A+EL  ++      PD V+YT+L++G C +  W++ + LF EMM++  
Sbjct: 220 INGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNC 279

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PN VTF++++   C+ G ++ A ++LE M + G   + ++ N +++  C  GRV+ A +
Sbjct: 280 MPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFK 339

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L   M S GC  D  SY  ++ G C+ +  + A  L +EM+     P  VT+NT
Sbjct: 340 LLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNT 393



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 167/331 (50%), Gaps = 9/331 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SP  V ++N L     +  H D    L   + S+ + PD YTY  LI   C  GRV+   
Sbjct: 107 SPVDVFAYNTLVAGYCRYGHLDAARRL---IGSMPVAPDAYTYTPLIRVLCDRGRVADAL 163

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  +LR    P+ VT+T L++ +C  S   +A A+  ++RA GC P++ TY  +ING+
Sbjct: 164 SLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGM 223

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           CR G    A  L   + +    +G   +PD ++Y+T+  GLC     D  +ELF +M ++
Sbjct: 224 CREGRVDDARELLNRLPS----YGF--QPDTVSYTTLLKGLCASKRWDDVEELFAEMMEK 277

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N  P+ VT+  LIR FC       A  +  +M + G   N    N+++N +CK G++D+A
Sbjct: 278 NCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDA 337

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +LL  M   G  PD   Y T++ G C   R + AKEL   M  N C  +  ++   I  
Sbjct: 338 FKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICI 397

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            C+   IE A+ L  +M   G    VVTYN 
Sbjct: 398 LCQKGLIEQAIMLIEQMSEHGCTVGVVTYNA 428



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 170/340 (50%), Gaps = 10/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+  +  P  V +F++L     +    +  + + +++   G   +    NI+IN  
Sbjct: 270 LFAEMMEKNCMPNEV-TFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSI 328

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GRV   F +L  +      PD +++T+++KGLC   R  +A  L  ++    C P+ 
Sbjct: 329 CKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNE 388

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+ T I  LC+ G    A+ L E+M+      GVV      TY+ + +G C +G +D A
Sbjct: 389 VTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVV------TYNALVNGFCVQGHIDSA 442

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ELF  M      P+ +TYT+L+ G C A   + A  L  EM+     PNVVTFNV+++ 
Sbjct: 443 LELFRSMP---CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSF 499

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ G ++EA  L+E M++ G  P+   YNTL+DG         A EL   + S G   D
Sbjct: 500 FCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPD 559

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           V ++  +I    K   IE A+ L+  +   G+RP  V YN
Sbjct: 560 VITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYN 599



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 163/329 (49%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  L   L  +K +D V  LF  +      P+  T+++LI  FC+ G V     V
Sbjct: 246 PDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQV 305

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++       +      +I  +C + R+ +A  L   + ++GC PD  +YTT++ GLCR
Sbjct: 306 LEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCR 365

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L  EM   N      C P+ +T++T    LC++G +++A  L  +M +   
Sbjct: 366 AERWDDAKELLNEMVRNN------CPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGC 419

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              VVTY +L+ GFC     + A  LF  M     +PN +T+  ++  LC   ++D A+ 
Sbjct: 420 TVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAAE 476

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  M++    P+   +N L+  FC  G +  A EL   M  +GC  ++ +Y  L++G  
Sbjct: 477 LVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGIT 536

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+   E AL L   ++SKG+ P V+T+++
Sbjct: 537 KDCSSEDALELLHGLVSKGVSPDVITFSS 565



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 155/321 (48%), Gaps = 9/321 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           NI+   + K    D    L   + S G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 322 NIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVR 381

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
           +   P+ VTF + I  LC +  I +A  L  ++   GC   V TY  L+NG C  GH   
Sbjct: 382 NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDS 441

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL LF  M          CKP+ ITY+T+  GLC    +D A EL  +M   +  P+VVT
Sbjct: 442 ALELFRSMP---------CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVT 492

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           +  L+  FC      EA  L  +MM+ G  PN++T+N +++ + K+   ++A  LL  ++
Sbjct: 493 FNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLV 552

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             GV PD   +++++       R+  A +LF  ++  G       Y  ++ G CK  EI+
Sbjct: 553 SKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEID 612

Query: 321 GALSLYSEMLSKGIRPTVVTY 341
            A+  ++ M+S G  P   TY
Sbjct: 613 NAIDFFAYMVSNGCMPNESTY 633



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 162/320 (50%), Gaps = 9/320 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  +   L + + +D    L   +      P+  T+N  I   C+ G +    ++
Sbjct: 351 PDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIML 410

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++     T   VT+ +L+ G C +  I  A  LF   R+  CKP+  TYTTL+ GLC 
Sbjct: 411 IEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELF---RSMPCKPNTITYTTLLTGLCN 467

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L  EM  G+      C P+ +T++ +    C++GF+++A EL  +M +   
Sbjct: 468 AERLDGAAELVAEMLRGD------CPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGC 521

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+++TY +L+ G        +A  L   ++ +GV P+V+TF+ I+  L K  +++EA +
Sbjct: 522 TPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQ 581

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L  ++  IG+RP A VYN ++ G C    ++ A + F  M SNGCM +  +Y ILI G  
Sbjct: 582 LFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLA 641

Query: 315 KNKEIEGALSLYSEMLSKGI 334
               ++ A  L S + S+G+
Sbjct: 642 HEGLLKEAQDLLSVLCSRGV 661



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 122/250 (48%), Gaps = 9/250 (3%)

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
            PD    T LI+ LC   R  +AA +       G   DVF Y TL+ G CR GH   A  
Sbjct: 73  APDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARR 132

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L   M            PDA TY+ +   LC  G V  A  L   M      P+VVTYT 
Sbjct: 133 LIGSMP---------VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTV 183

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+   C  + + +A  +  EM  +G  PN+VT+NVI+N +C+ G++D+A  LL  +   G
Sbjct: 184 LLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYG 243

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            +PD   Y TL+ G C + R +  +ELF  M    CM +  ++ +LI  +C+   +E A+
Sbjct: 244 FQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAI 303

Query: 324 SLYSEMLSKG 333
            +  +M   G
Sbjct: 304 QVLEQMTEHG 313



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 144/288 (50%), Gaps = 11/288 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN     L +    +  + L ++++  G    + TYN L+N FC  G +     
Sbjct: 385 PPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSAL- 443

Query: 74  VLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
               + RS    P+ +T+T+L+ GLC   R+  AA L  ++    C P+V T+  L++  
Sbjct: 444 ---ELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFF 500

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A+ L E+M     E G  C P+ ITY+T+ DG+ K+   + A EL   +  +
Sbjct: 501 CQKGFLEEAIELVEQMM----EHG--CTPNLITYNTLLDGITKDCSSEDALELLHGLVSK 554

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            ++PDV+T++S+I      +   EA  LF  + D G++P  V +N I+  LCK  ++D A
Sbjct: 555 GVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNA 614

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
                 M+  G  P+ S Y  L++G    G +  A++L   + S G +
Sbjct: 615 IDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGVL 662



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G  P+V     ++  LC+ G+  +A+R+L      G   D   YNTL+ G+C  G ++ A
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + L  SM       D ++Y  LI   C    +  ALSL  +ML +G +P VVTY
Sbjct: 131 RRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTY 181


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 173/328 (52%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K+           R+ + G  PD +TYN +I+ +CK G +     +
Sbjct: 278 PDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATEL 337

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   +   F PD VT+ SLI GLCAE  I  A  LF + +A   KPD+  Y +L+ GLCR
Sbjct: 338 LKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCR 397

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + AL +  EM     E G  C PD  TY+ I +GLCK G +  A  +      +  
Sbjct: 398 QGLILHALQVMNEMV----EEG--CHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGY 451

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV T+ +LI G+C     + A  L   M   G+ P+V+T+N ++N LCK GK  E + 
Sbjct: 452 LPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNE 511

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             E MI  G RP+A  YN L++ FC   ++  A  + V M  +G + D  S+  LI+G+C
Sbjct: 512 TFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFC 571

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +N +++GA  L+ ++  KG   T  T+N
Sbjct: 572 RNGDLDGAYLLFQKLDEKGYSATADTFN 599



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 168/328 (51%), Gaps = 8/328 (2%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           P     ++ G  A    Y+    LF  +    +FPD+ T+N +++  C+ G V     +L
Sbjct: 176 PAAYCTVVRGLYAHGHGYNA-RHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALL 234

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
            ++L+   + +  T    I+GLC + R+ EA AL  ++ A+   PDV TY TL+ GLC+ 
Sbjct: 235 AKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCKD 293

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A      M N        C PD  TY+TI DG CK G + +A EL      +   
Sbjct: 294 SKVQEAAQYLGRMMNQG------CIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFV 347

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PD VTY SLI G C   D   A  LF E   + ++P++V +N ++  LC+ G +  A ++
Sbjct: 348 PDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQV 407

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           +  M++ G  PD   YN +++G C  G ++ A  +       G + DVF++  LI+GYCK
Sbjct: 408 MNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCK 467

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +++ AL L   M + GI P V+TYN+
Sbjct: 468 RLKLDSALQLVERMWTYGIAPDVITYNS 495



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 182/364 (50%), Gaps = 42/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN +   L +        +L  ++   G+  + +T NI I   C+ GR+     +
Sbjct: 209 PDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL 268

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + R + +   PD VT+ +L++GLC +S++ EAA    ++   GC PD FTY T+I+G C+
Sbjct: 269 VER-MGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCK 327

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  L ++        G V  PD +TY ++ +GLC EG +++A ELF + + +++
Sbjct: 328 SGMLQEATELLKDAVFK----GFV--PDRVTYCSLINGLCAEGDIERALELFNEAQAKDL 381

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG------- 247
            PD+V Y SL++G C       A  +  EM+++G  P++ T+N+I+N LCK G       
Sbjct: 382 KPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAV 441

Query: 248 ----------------------------KMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
                                       K+D A +L+E M   G+ PD   YN++++G C
Sbjct: 442 VMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLC 501

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G+     E F  M   GC  +  +Y ILI  +CK  ++E A  +   M   G+ P  V
Sbjct: 502 KAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAV 561

Query: 340 TYNT 343
           ++NT
Sbjct: 562 SFNT 565



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 162/325 (49%), Gaps = 6/325 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L +       L +   +   G  PD++TYNI+IN  CKMG +S   VV
Sbjct: 383 PDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVV 442

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +   +   + PD  TF +LI G C   ++  A  L  ++  +G  PDV TY +++NGLC+
Sbjct: 443 MNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCK 502

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G        FEEM          C+P+AITY+ + +  CK   +++A  + ++M  + +
Sbjct: 503 AGKAKEVNETFEEMILKG------CRPNAITYNILIENFCKINQLEEASGVIVRMCQDGL 556

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD V++ +LI GFC   D + A  LF ++ ++G      TFN+++        M  A +
Sbjct: 557 VPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEK 616

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   MI  G +PD   Y  L+DG C    V+RA      M S G +  + ++G ++N   
Sbjct: 617 IFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLA 676

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
            N  +  A+++   M+  G+ P VV
Sbjct: 677 MNHRVSEAVAIIHIMVRMGVVPEVV 701



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 163/327 (49%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   L      +  L LF    +  L PDL  YN L+   C+ G +     V
Sbjct: 348 PDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQV 407

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++     PD  T+  +I GLC    I +AA +       G  PDVFT+ TLI+G C+
Sbjct: 408 MNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCK 467

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L E M      +G+   PD ITY+++ +GLCK G   +  E F +M  +  
Sbjct: 468 RLKLDSALQLVERMWT----YGIA--PDVITYNSVLNGLCKAGKAKEVNETFEEMILKGC 521

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +TY  LI  FC  N   EA  + + M   G+ P+ V+FN +++  C+NG +D A  
Sbjct: 522 RPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYL 581

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + + + G    A  +N L+  +     +  A+++F  M S G   D+++Y IL++G C
Sbjct: 582 LFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLC 641

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K   ++ A +  +EM+SKG  P++ T+
Sbjct: 642 KAANVDRAYAHLAEMISKGFVPSMATF 668



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 156/336 (46%), Gaps = 8/336 (2%)

Query: 9   RMHPSPPPVCSFNIL-FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           R H +P  +    +      A+       +  F+R++     P    YN +++       
Sbjct: 62  RSHLAPDSLQPLYVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAY 121

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 V  R+L +   PDA T T  +K  C   R   A  L   L   GC      Y T
Sbjct: 122 HDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCT 181

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           ++ GL   GH   A +LF+EM       G    PD  T++ +   LC++G V ++  L  
Sbjct: 182 VVRGLYAHGHGYNARHLFDEM------LGRDVFPDVATFNNVLHALCQKGDVMESGALLA 235

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           K+    ++ +  T    IRG C      EA  L +E M   V P+VVT+N +M  LCK+ 
Sbjct: 236 KVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL-VERMGAYVAPDVVTYNTLMRGLCKDS 294

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+ EA++ L  M+  G  PD   YNT++DG+C +G +  A EL       G + D  +Y 
Sbjct: 295 KVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYC 354

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LING C   +IE AL L++E  +K ++P +V YN+
Sbjct: 355 SLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNS 390



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 131/325 (40%), Gaps = 80/325 (24%)

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT--YTTLINGLCRTGHTIVALNLFE 146
            + +LI+ L +  R+ +  A     R+    PD     Y   I    R G    A++ FE
Sbjct: 37  AYRALIRELVSAGRLDDVDAALASARSH-LAPDSLQPLYVASIQAYARAGRLRAAVDAFE 95

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
            M          C P A  Y+ I D L    + D+A +++++M    + PD  T+T  ++
Sbjct: 96  RMDL------FACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLK 149

Query: 207 GFC------------------------------------YANDWNEAKCLFIEMMDQGVQ 230
            FC                                    + + +N A+ LF EM+ + V 
Sbjct: 150 SFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYN-ARHLFDEMLGRDVF 208

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIG--------------------------- 263
           P+V TFN +++ LC+ G + E+  LL  +++ G                           
Sbjct: 209 PDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL 268

Query: 264 -------VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
                  V PD   YNTLM G C   +V  A +    M + GC+ D F+Y  +I+GYCK+
Sbjct: 269 VERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKS 328

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
             ++ A  L  + + KG  P  VTY
Sbjct: 329 GMLQEATELLKDAVFKGFVPDRVTY 353


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/326 (35%), Positives = 180/326 (55%), Gaps = 7/326 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FN L   L K +  +  ++  K+++    FP L+TY  L++ F K+GR+    + L   
Sbjct: 256 TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEA 315

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +   F PDAVT+TS+I GLC   R+ E    F ++R  G +PD  TY  LI+G  +    
Sbjct: 316 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMI 375

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  ++ +M       G V     +TY+ I DGLCK G V +A   FL M++      V
Sbjct: 376 PKAHRVYRQMLQS----GTVVS--TVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATV 429

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY++L+ GFC   + + A  LF  M+D+G +PN+V++N+I+  LC+ GK+ +A    E 
Sbjct: 430 VTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEK 489

Query: 259 MIQIGVRPDASVYNTLMDGFCLT-GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
           ++Q  + PD   +N+ + G C     V    ELF SM S G   ++ SY IL++G C+  
Sbjct: 490 LLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAG 549

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            +E  L ++ EM+S+G+ P VV +NT
Sbjct: 550 GLEVTLEIFHEMVSRGVAPDVVVFNT 575



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 174/376 (46%), Gaps = 48/376 (12%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +L   P  P + +F ++   L + K  D   S+ +R    G  PD  TYN+ I+  CK  
Sbjct: 31  LLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAE 90

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           RV   F +L ++      P  VT+T+L+ GL    R+ EA A+  ++   G  P + TYT
Sbjct: 91  RVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYT 150

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            +I+GL + G    A  +F +M  GNG     C+PDA  Y+ +  GL K G +D+A  ++
Sbjct: 151 VVIDGLSKAGRVEEARRIFVDML-GNG-----CRPDAFVYTALISGLAKIGKLDEAL-VY 203

Query: 187 LKMKDEN-----INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           L    EN     + PDVV +  +IR  C + +  +A   F E +D  +     TFN ++ 
Sbjct: 204 LNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDE-LDDSLDLTHFTFNPLVA 262

Query: 242 ELCKN-----------------------------------GKMDEASRLLELMIQIGVRP 266
            LCK                                    G++DEA   L+  ++ G  P
Sbjct: 263 ALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIP 322

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           DA  Y +++DG C  GRV    E F  M + G   D  +Y  LI+G+ K K I  A  +Y
Sbjct: 323 DAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVY 382

Query: 327 SEMLSKGIRPTVVTYN 342
            +ML  G   + VTYN
Sbjct: 383 RQMLQSGTVVSTVTYN 398



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 164/333 (49%), Gaps = 11/333 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLN----SIGLFPDLYTYNILINCFCKMGRVSP 70
           P    +  L   LAK    D  L    ++     + G+ PD+  +N++I   C  G +  
Sbjct: 179 PDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLED 238

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
                   L         TF  L+  LC   R  EA A   K+    C P +FTYT+L++
Sbjct: 239 ALAYFDE-LDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVD 297

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G  + G    AL   +E      E G +  PDA+TY++I DGLCK G V++  E F +M+
Sbjct: 298 GFLKLGRLDEALLQLKEAV----ERGFI--PDAVTYTSIIDGLCKLGRVEEGCERFHEMR 351

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           +    PD VTY +LI GF  A    +A  ++ +M+  G   + VT+N+I++ LCK G++ 
Sbjct: 352 NRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVA 411

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA      M + G       Y+ LMDGFC  G V+ A ELF  M   GC  ++ SY I+I
Sbjct: 412 EAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIII 471

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G C+  ++  A   + ++L + + P V T+N+
Sbjct: 472 RGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNS 504



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 160/358 (44%), Gaps = 43/358 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L     K    D  L   K     G  PD  TY  +I+  CK+GRV  G   
Sbjct: 287 PTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCER 346

Query: 75  LGRILRSCFTPDAVTFTSLIKG-----------------------------------LCA 99
              +    + PDAVT+ +LI G                                   LC 
Sbjct: 347 FHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCK 406

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             R+ EA A F  +   GC   V TY+ L++G C  G+   A+ LF  M +        C
Sbjct: 407 AGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG------C 460

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW-NEAK 218
           +P+ ++Y+ I  GLC+ G + KA   F K+    + PDV T+ S + G C   D   +  
Sbjct: 461 EPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGV 520

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF  M+ QG  PN+ +++++M+ +C+ G ++    +   M+  GV PD  V+NTL+   
Sbjct: 521 ELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWL 580

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           C+ GRV+ A E+F  +E      D +SY  L++   + + +E A  L   M  +G  P
Sbjct: 581 CIAGRVDEALEVFRELERRSA-PDAWSYWSLLDALSRCERMEEARLLSFHMKLQGCAP 637



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 156/328 (47%), Gaps = 20/328 (6%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82
           L   L K    D  + L   L+ +   PD+  + ++IN  C+  R+   F VL R +R+ 
Sbjct: 15  LLNGLCKTGQLDRAMLL---LDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAG 71

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
             PD VT+   I GLC   R+ +A  L  K+    C P   TYT L++GL + G    A+
Sbjct: 72  CEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAM 131

Query: 143 NLFEEMAN-GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
            + E+M   GN        P   TY+ + DGL K G V++A+ +F+ M      PD   Y
Sbjct: 132 AILEQMVEKGNS-------PTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVY 184

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMD----QGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           T+LI G       +EA     +M++    +GV+P+VV  N+++ +LC +G +++A   L 
Sbjct: 185 TALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDA---LA 241

Query: 258 LMIQIGVRPDAS--VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              ++    D +   +N L+   C   R   A      M    C   +F+Y  L++G+ K
Sbjct: 242 YFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLK 301

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              ++ AL    E + +G  P  VTY +
Sbjct: 302 LGRLDEALLQLKEAVERGFIPDAVTYTS 329



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 13/226 (5%)

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D    T L+NGLC+TG    A+ L +EM          C PD + ++ + +GLC+E  +D
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLLLDEMP---------CSPDMVAFTVVINGLCREKRLD 58

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  +  +       PD VTY   I G C A   ++A  L  +M ++   P  VT+  ++
Sbjct: 59  EAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALV 118

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L K G++DEA  +LE M++ G  P    Y  ++DG    GRV  A+ +FV M  NGC 
Sbjct: 119 DGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCR 178

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEML----SKGIRPTVVTYN 342
            D F Y  LI+G  K  +++ AL   ++M+    ++G+ P VV +N
Sbjct: 179 PDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHN 224



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M+    SP  + S++IL   + +    +  L +F  + S G+ PD+  +N LI   
Sbjct: 522 LFESMVSQGTSPN-LHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWL 580

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GRV     V   + R    PDA ++ SL+  L    R+ EA  L   ++  GC P  
Sbjct: 581 CIAGRVDEALEVFRELERRS-APDAWSYWSLLDALSRCERMEEARLLSFHMKLQGCAPRH 639

Query: 123 FTYT 126
           +  T
Sbjct: 640 YDLT 643


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 186/344 (54%), Gaps = 13/344 (3%)

Query: 3   IFDYMLRMHPSP---PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           IFD M    PS    P + SF+ L G L+KN   D  L  F+ + + GL PD   Y ILI
Sbjct: 485 IFDEM----PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 540

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
             FC+ G +S    V   +L      D VT+ +++ GLC E  + EA  LFT++   G  
Sbjct: 541 GGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 600

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD +T+TTLING  + G+   A+ LFE M   N       KPD +TY+T+ DG CK   +
Sbjct: 601 PDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRN------LKPDVVTYNTLIDGFCKGSEM 654

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +K  EL+  M    I P+ ++Y  LI G+C     +EA  L+ EM+++G +  ++T N I
Sbjct: 655 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTI 714

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   C+ G   +A   L  M+  G+ PD   YNTL++GF     ++RA  L   ME++G 
Sbjct: 715 VKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGL 774

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + DV +Y +++NG+ +   ++ A  +  +M+ +G+ P   TY +
Sbjct: 775 LPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTS 818



 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 179/362 (49%), Gaps = 41/362 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V + NI+   L KN+  +   S    +   G+FPD+ TYN LIN +C+ G +   F ++ 
Sbjct: 358 VYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMD 417

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P   T+ ++I GLC   + + A  +  ++   G  PD  TY  L+   CR  
Sbjct: 418 SMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRND 477

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           + + A  +F+EM +     GVV  PD +++S +   L K G +D+A + F  MK+  + P
Sbjct: 478 NMMDAERIFDEMPSQ----GVV--PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAP 531

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC------------ 244
           D V YT LI GFC     +EA  +  EM++QG   +VVT+N I+N LC            
Sbjct: 532 DNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELF 591

Query: 245 -----------------------KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
                                  K+G M++A  L E+MIQ  ++PD   YNTL+DGFC  
Sbjct: 592 TEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKG 651

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             + +  EL+  M S     +  SYGILINGYC    +  A  L+ EM+ KG   T++T 
Sbjct: 652 SEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITC 711

Query: 342 NT 343
           NT
Sbjct: 712 NT 713



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 178/340 (52%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML++  SP    ++NIL     +N +      +F  + S G+ PDL +++ LI   
Sbjct: 450 VLDEMLKIGMSPD-TATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLL 508

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G +         +  +   PD V +T LI G C    + EA  +  ++   GC  DV
Sbjct: 509 SKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDV 568

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY T++NGLC+      A  LF EM     E GV   PD  T++T+ +G  K+G ++KA
Sbjct: 569 VTYNTILNGLCKEKMLSEADELFTEMT----ERGVF--PDFYTFTTLINGYXKDGNMNKA 622

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF  M   N+ PDVVTY +LI GFC  ++  +   L+ +M+ + + PN +++ +++N 
Sbjct: 623 VTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILING 682

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G + EA RL + M++ G        NT++ G+C  G   +A E   +M   G + D
Sbjct: 683 YCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPD 742

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  LING+ K + ++ A +L ++M + G+ P V+TYN
Sbjct: 743 GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYN 782



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 175/358 (48%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     +    +    L   ++  GL P ++TYN +IN  CK G+      V
Sbjct: 391 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 450

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L+   +PD  T+  L+   C    +M+A  +F ++ + G  PD+ +++ LI  L +
Sbjct: 451 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 510

Query: 135 TGHTIVALNLFEEMANGN------------GEF---GVV--------------CKPDAIT 165
            G    AL  F +M N              G F   GV+              C  D +T
Sbjct: 511 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVT 570

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+TI +GLCKE  + +A ELF +M +  + PD  T+T+LI G+    + N+A  LF  M+
Sbjct: 571 YNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMI 630

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            + ++P+VVT+N +++  CK  +M++ + L   MI   + P+   Y  L++G+C  G V+
Sbjct: 631 QRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 690

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A  L+  M   G    + +   ++ GYC+      A    S ML KGI P  +TYNT
Sbjct: 691 EAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 748



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 159/324 (49%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++L     + +        F+ L S GL   +   N L+    K+G V   + +   ++
Sbjct: 291 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 350

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           RS    +  T   +I  LC   +I    +  + +   G  PDV TY TLIN  CR G   
Sbjct: 351 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 410

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L + M+      G   KP   TY+ I +GLCK G   +AK +  +M    ++PD  
Sbjct: 411 EAFELMDSMS------GKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTA 464

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY  L+   C  ++  +A+ +F EM  QGV P++V+F+ ++  L KNG +D+A +    M
Sbjct: 465 TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDM 524

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              G+ PD  +Y  L+ GFC  G ++ A ++   M   GC  DV +Y  ++NG CK K +
Sbjct: 525 KNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKML 584

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A  L++EM  +G+ P   T+ T
Sbjct: 585 SEADELFTEMTERGVFPDFYTFTT 608



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 140/286 (48%), Gaps = 6/286 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N +   L K K       LF  +   G+FPD YT+  LIN + K G ++    +  
Sbjct: 568 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFE 627

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +++    PD VT+ +LI G C  S + +   L+  + +    P+  +Y  LING C  G
Sbjct: 628 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 687

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L++EM     E  +      IT +TI  G C+ G   KA E    M  + I P
Sbjct: 688 CVSEAFRLWDEMVEKGFEATI------ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVP 741

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D +TY +LI GF    + + A  L  +M + G+ P+V+T+NVI+N   + G+M EA  ++
Sbjct: 742 DGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIM 801

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             MI+ GV PD S Y +L++G      +  A  +   M   G + D
Sbjct: 802 LKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 126/256 (49%), Gaps = 6/256 (2%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           + + F  L++      ++ E    F  L++ G    +    +L+ GL + G   +A  ++
Sbjct: 287 NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 346

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
           +E+     +  V       T + + + LCK   ++  K     M+++ + PDVVTY +LI
Sbjct: 347 QEVVRSGVQVNVY------TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 400

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
             +C      EA  L   M  +G++P V T+N I+N LCK GK   A  +L+ M++IG+ 
Sbjct: 401 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 460

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD + YN L+   C    +  A+ +F  M S G + D+ S+  LI    KN  ++ AL  
Sbjct: 461 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 520

Query: 326 YSEMLSKGIRPTVVTY 341
           + +M + G+ P  V Y
Sbjct: 521 FRDMKNAGLAPDNVIY 536



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%)

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N   + + +  L+R +  A    E    F  +  +G+  ++   N ++  L K G +D A
Sbjct: 283 NCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLA 342

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             + + +++ GV+ +    N +++  C   ++   K     ME  G   DV +Y  LIN 
Sbjct: 343 WEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINA 402

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           YC+   +E A  L   M  KG++P V TYN 
Sbjct: 403 YCRQGLLEEAFELMDSMSGKGLKPCVFTYNA 433



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 57/107 (53%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K ++ D   +L  ++ + GL PD+ TYN+++N F + GR+    ++
Sbjct: 741 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 800

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           + +++     PD  T+TSLI G   ++ + EA  +  ++   G  PD
Sbjct: 801 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/313 (37%), Positives = 169/313 (53%), Gaps = 12/313 (3%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           + VL L + +   GL P+ YTYN +I   CK G+V+    VL  ++     PD V +T+L
Sbjct: 205 EWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTL 264

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I G C    +  A  LF +++     PD  TYT +I GLC+TG  + A  LF EM     
Sbjct: 265 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEM----- 319

Query: 154 EFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
               VCK   PD +TY+ + DG CKEG + +A  L  +M    + P++VTYT+L  G C 
Sbjct: 320 ----VCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCK 375

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
             + + A  L  EM  +G++ N+ T+N ++N LCK G +D+A +L++ M   G  PDA  
Sbjct: 376 CGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVT 435

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           Y TLMD +C +  + RA EL   M        V ++ +L+NG+C +  +E    L   ML
Sbjct: 436 YTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWML 495

Query: 331 SKGIRPTVVTYNT 343
            KGI P   TYN+
Sbjct: 496 EKGIMPNATTYNS 508



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 172/309 (55%), Gaps = 6/309 (1%)

Query: 35  TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94
           +   LF  +    + PD  TY  +I   C+ GRV     +   ++     PD VT+T+LI
Sbjct: 276 SAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 335

Query: 95  KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            G C E ++ EA +L  ++   G  P++ TYT L +GLC+ G    A  L  EM     E
Sbjct: 336 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLE 395

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
             +       TY+++ +GLCK G +D+A +L   M+    +PD VTYT+L+  +C + + 
Sbjct: 396 LNIY------TYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREM 449

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             A  L  +M+D+ +QP VVTFNV+MN  C +G +++  +LL+ M++ G+ P+A+ YN+L
Sbjct: 450 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 509

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +  +C+   +    E++  M + G + D  +Y ILI G+CK + ++ A  L+ +M+ KG 
Sbjct: 510 IKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGF 569

Query: 335 RPTVVTYNT 343
             TV +YN 
Sbjct: 570 NLTVSSYNA 578



 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 167/342 (48%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD M +   SP  +    ++ G L +         LF  +    L PD  TY  LI+
Sbjct: 278 YRLFDEMQKRKISPDFITYTAVICG-LCQTGRVMEADKLFHEMVCKRLEPDEVTYTALID 336

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK G++   F +  ++L+   TP+ VT+T+L  GLC    +  A  L  ++   G + 
Sbjct: 337 GYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLEL 396

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +++TY +L+NGLC+ G+   A+ L ++M            PDA+TY+T+ D  CK   + 
Sbjct: 397 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH------PDAVTYTTLMDAYCKSREMV 450

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A EL  +M D  + P VVT+  L+ GFC +    + + L   M+++G+ PN  T+N ++
Sbjct: 451 RAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 510

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
            + C    M   + +   M   GV PD + YN L+ G C    +  A  L   M   G  
Sbjct: 511 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFN 570

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             V SY  LI G+ K K+   A  L+ +M  +G+      YN
Sbjct: 571 LTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYN 612



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 148/329 (44%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K        SL  ++  +GL P++ TY  L +  CK G V     +
Sbjct: 326 PDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANEL 385

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R     +  T+ SL+ GLC    I +A  L   +   G  PD  TYTTL++  C+
Sbjct: 386 LHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCK 445

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +   + A  L  +M +         +P  +T++ + +G C  G ++  ++L   M ++ I
Sbjct: 446 SREMVRAHELLRQMLDRE------LQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGI 499

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY SLI+ +C  N+      ++  M  +GV P+  T+N+++   CK   M EA  
Sbjct: 500 MPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWF 559

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+  G     S YN L+ GF    +   A+ELF  M   G + D   Y I  +   
Sbjct: 560 LHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINY 619

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              ++E  L L  E + K +   + T NT
Sbjct: 620 DEGKMELTLELCDEAIEKCLVGDIQTKNT 648


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 183/339 (53%), Gaps = 42/339 (12%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F +M++  P  P +  F+ L   ++K K YD V+ L++++  +G+  +L T NIL+NCF
Sbjct: 68  LFFHMVQCRP-LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCF 126

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S     LG++++                                    G +P +
Sbjct: 127 CRCSQLSLALSFLGKMIK-----------------------------------LGHEPSI 151

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+ +L+NG CR      AL +F++M       G+  KP+ + Y+TI DGLCK   VD A
Sbjct: 152 VTFGSLLNGFCRGDRVYDALYMFDQMV------GMGYKPNVVIYNTIIDGLCKSKQVDNA 205

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L  +M+ + I PDVVTY SLI G C +  W++A  +   M  + + P+V TFN +++ 
Sbjct: 206 LDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDA 265

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K G++ EA    E MI+  + PD   Y+ L+ G C+  R++ A+E+F  M S GC  D
Sbjct: 266 CVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPD 325

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           V +Y ILINGYCK+K++E  + L+ EM  +G+    VTY
Sbjct: 326 VVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTY 364



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 175/337 (51%), Gaps = 7/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+++   P  V   ++L G    ++ YD  L +F ++  +G  P++  YN +I+  CK  
Sbjct: 142 MIKLGHEPSIVTFGSLLNGFCRGDRVYDA-LYMFDQMVGMGYKPNVVIYNTIIDGLCKSK 200

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +V     +L R+ +    PD VT+ SLI GLC+  R  +A  + + +      PDVFT+ 
Sbjct: 201 QVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFN 260

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI+   + G    A   +EEM   + +      PD +TYS +  GLC    +D+A+E+F
Sbjct: 261 ALIDACVKEGRVSEAEEFYEEMIRRSLD------PDIVTYSLLIYGLCMYSRLDEAEEMF 314

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M  +   PDVVTY+ LI G+C +        LF EM  +GV  N VT+ +++   C+ 
Sbjct: 315 GFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRA 374

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           GK++ A  +   M+  GV P+   YN L+ G C  G++ +A  +   M+ NG   D+ +Y
Sbjct: 375 GKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTY 434

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            I+I G CK  E+  A  +Y  +  +G+ P + TY T
Sbjct: 435 NIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTT 471



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 172/334 (51%), Gaps = 7/334 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+ M    P V  +N +   L K+K  D  L L  R+   G+ PD+ TYN LI+  
Sbjct: 173 MFDQMVGM-GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGL 231

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GR S    ++  + +    PD  TF +LI     E R+ EA   + ++      PD+
Sbjct: 232 CSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDI 291

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY+ LI GLC       A  +F  M +        C PD +TYS + +G CK   V+  
Sbjct: 292 VTYSLLIYGLCMYSRLDEAEEMFGFMVSKG------CFPDVVTYSILINGYCKSKKVEHG 345

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF +M    +  + VTYT LI+G+C A   N A+ +F  M+  GV PN++T+NV+++ 
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHG 405

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC NGK+++A  +L  M + G+  D   YN ++ G C  G V  A +++ S+   G M D
Sbjct: 406 LCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPD 465

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           +++Y  ++ G  K      A +L+ +M   GI P
Sbjct: 466 IWTYTTMMLGLYKKGLRREADALFRKMKEDGILP 499



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 134/282 (47%), Gaps = 29/282 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L  +  +     +   +    ++PD++T+N LI+   K GRVS     
Sbjct: 219 PDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEF 278

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    PD VT++ LI GLC  SR+ EA  +F  + + GC PDV TY+ LING C+
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCK 338

Query: 135 TGHTIVALNLFEEMANGN------------------GEFGVV-----------CKPDAIT 165
           +      + LF EM+                     G+  V              P+ IT
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIIT 398

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  GLC  G ++KA  +   M+   ++ D+VTY  +IRG C A +  +A  ++  + 
Sbjct: 399 YNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLN 458

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            QG+ P++ T+  +M  L K G   EA  L   M + G+ P+
Sbjct: 459 CQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 6/223 (2%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P +  ++ L++ + +     V + L+E+M       G+    +  T + + +  C+   +
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQ----MLGI--PHNLCTCNILLNCFCRCSQL 132

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
             A     KM      P +VT+ SL+ GFC  +   +A  +F +M+  G +PNVV +N I
Sbjct: 133 SLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTI 192

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LCK+ ++D A  LL  M + G+ PD   YN+L+ G C +GR + A  +   M     
Sbjct: 193 IDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREI 252

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             DVF++  LI+   K   +  A   Y EM+ + + P +VTY+
Sbjct: 253 YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYS 295



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D + +LF  M      P +  ++ L+        ++    L+ +M   G+  N+ T N+
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N  C+  ++  A   L  MI++G  P    + +L++GFC   RV  A  +F  M   G
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +V  Y  +I+G CK+K+++ AL L + M   GI P VVTYN+
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNS 226


>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
 gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
          Length = 438

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 184/364 (50%), Gaps = 43/364 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILINCFCKMGRVSPGFVVL 75
           SFN     +A++     V SLF R+   G   + PDL TY+ILI C C+ GR+  GF  L
Sbjct: 60  SFNRTLTDVARDSPAAAV-SLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAAL 118

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGCKPDVFTYTTLINGLCR 134
           G +++  F  +A+TF  L+KGLCA+ R  +A  +   ++    C PDVF+ T L+ GLC 
Sbjct: 119 GNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCD 178

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
              +  AL L   MA+  G       PD ++Y+T+ +G  KEG  DKA   + +M D  I
Sbjct: 179 ENRSQEALELLHMMADDRGGGS---PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRI 235

Query: 195 NPDVVTYTSLI-----------------------------------RGFCYANDWNEAKC 219
           +P+VVTY+S+I                                    G+C +    EA  
Sbjct: 236 SPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 295

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
              +M   GV+PNVVT+  +MN LCKNG+  EA ++ + M + G+ PD + Y TL+ G+ 
Sbjct: 296 TLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYA 355

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +     L   M  NG   D   + ILI  Y K ++++ A+ ++S+M   G+ P VV
Sbjct: 356 TKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVV 415

Query: 340 TYNT 343
            Y T
Sbjct: 416 CYGT 419



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 6/240 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SPP V S+  +     K    D   S +  +    + P++ TY+ +I   CK   +    
Sbjct: 200 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAM 259

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            VL  ++++   PD +T+ S++ G C+  +  EA     K+R+ G +P+V TY +L+N L
Sbjct: 260 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYL 319

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A  +F+ M     E      PD  TY T+  G   +G + +   L   M   
Sbjct: 320 CKNGRCTEARKIFDSMTKRGLE------PDIATYRTLLQGYATKGALVEMHALLDLMVRN 373

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            I PD   +  LI  +      ++A  +F +M   G+ PNVV +  +++ LCK+G +D+A
Sbjct: 374 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 433


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 187/331 (56%), Gaps = 11/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYD---TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P   ++N L     +    D    V+SL +   +    P+L T+N ++N  CK GR+   
Sbjct: 185 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAK--PNLVTFNSMVNGLCKAGRMEGA 242

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             V   ++R    PD V++ +L+ G C    + E+ A+F+++   G  PDV T+T+LI+ 
Sbjct: 243 RKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHA 302

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+ G+   A+ L  +M     E G+  + + +T++ + DG CK+GF+D A     +M+ 
Sbjct: 303 TCKAGNLEQAVALVAQMR----ERGL--RMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 356

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             I P VV Y +LI G+C     + A+ L  EM  + V+P+VVT++ I++  CK G +D 
Sbjct: 357 CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDS 416

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A +L + M++ GV PDA  Y++L+ G C   R+N A ELF +M   G   D F+Y  LI+
Sbjct: 417 AFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 476

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G+CK   +E ALSL+ EM+ KG+ P VVTY+
Sbjct: 477 GHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 186/334 (55%), Gaps = 16/334 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKR-LNSI---GLFPDLYTYNILINCFCKMGRVSP 70
           P V ++N +   L+     D  L   +R L+S+   G+ P++YTYNIL+   C  GR+  
Sbjct: 116 PSVPAYNAVLLALS-----DASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEE 170

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLI 129
              V+G +  +   P+AVT+ +L+   C    +  A  + + +R  G  KP++ T+ +++
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           NGLC+ G    A  +F+EM            PD ++Y+T+  G CK G + ++  +F +M
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREG------LAPDVVSYNTLLSGYCKVGCLHESLAVFSEM 284

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               + PDVVT+TSLI   C A +  +A  L  +M ++G++ N VTF  +++  CK G +
Sbjct: 285 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+A   +E M + G++P    YN L++G+C  GR++ A+EL   ME+     DV +Y  +
Sbjct: 345 DDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 404

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+GYCK   ++ A  L  +ML KG+ P  +TY++
Sbjct: 405 ISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 438



 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 178/331 (53%), Gaps = 6/331 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P + +FN +   L K    +    +F  +   GL PD+ +YN L++ +CK+G +    
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 278

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V   + +    PD VTFTSLI   C    + +A AL  ++R  G + +  T+T LI+G 
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    AL   EEM     +  VVC      Y+ + +G CK G +D A+EL  +M+ +
Sbjct: 339 CKKGFLDDALLAVEEMRKCGIQPSVVC------YNALINGYCKLGRMDLARELIREMEAK 392

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PDVVTY+++I G+C   + + A  L  +M+ +GV P+ +T++ ++  LC+  ++++A
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L E M+Q+GV+PD   Y TL+DG C  G V +A  L   M   G + DV +Y +LING
Sbjct: 453 CELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLING 512

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             K+   + A  L  ++  +   P  + Y+ 
Sbjct: 513 LSKSARTKEAHRLLFKLYHEDPVPDNIKYDA 543



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 174/384 (45%), Gaps = 57/384 (14%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R     P V S+N L     K       L++F  +   GL PD+ T+  LI+  
Sbjct: 245 VFDEMVR-EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHAT 303

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     ++ ++       + VTFT+LI G C +  + +A     ++R  G +P V
Sbjct: 304 CKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSV 363

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  LING C+ G   +A  L  EM           KPD +TYSTI  G CK G +D A
Sbjct: 364 VCYNALINGYCKLGRMDLARELIREMEAKR------VKPDVVTYSTIISGYCKVGNLDSA 417

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L  KM  + + PD +TY+SLIRG C     N+A  LF  M+  GVQP+  T+  +++ 
Sbjct: 418 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 477

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD-------------------------- 276
            CK G +++A  L + MI+ GV PD   Y+ L++                          
Sbjct: 478 HCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPD 537

Query: 277 ------------------------GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
                                   GFC+ G +  A +++ SM       D   Y ILI+G
Sbjct: 538 NIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHG 597

Query: 313 YCKNKEIEGALSLYSEMLSKGIRP 336
           +C+   +  ALS + +ML  G  P
Sbjct: 598 HCRGGNVRKALSFHKQMLRSGFSP 621



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 167/338 (49%), Gaps = 21/338 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L     K    D    L + + +  + PD+ TY+ +I+ +CK+G +   F +
Sbjct: 361 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 420

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L+    PDA+T++SLI+GLC E R+ +A  LF  +   G +PD FTYTTLI+G C+
Sbjct: 421 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCK 480

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL+L +EM       GV+  PD +TYS + +GL K     +A  L  K+  E+ 
Sbjct: 481 EGNVEKALSLHDEMIRK----GVL--PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDP 534

Query: 195 NPDVVTY---------------TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            PD + Y                +L++GFC      EA  ++  M+D+  + +   ++++
Sbjct: 535 VPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSIL 594

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+ G + +A    + M++ G  P+++   +L+ G    G V  A      + +   
Sbjct: 595 IHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCP 654

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           + D  +   LI+   K   ++  + +   M   G+ P+
Sbjct: 655 LADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPS 692


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 189/338 (55%), Gaps = 11/338 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYD---TVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           +R     P   ++N L     +    D    V+SL +   +    P+L T+N ++N  CK
Sbjct: 36  MRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAK--PNLVTFNSMVNGLCK 93

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
            GR+     V   ++R    PD V++ +L+ G C    + E+ A+F+++   G  PDV T
Sbjct: 94  AGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVT 153

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           +T+LI+  C+ G+   A+ L  +M     E G+  + + +T++ + DG CK+GF+D A  
Sbjct: 154 FTSLIHATCKAGNLEQAVALVAQMR----ERGL--RMNEVTFTALIDGFCKKGFLDDALL 207

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
              +M+   I P VV Y +LI G+C     + A+ L  EM  + V+P+VVT++ I++  C
Sbjct: 208 AVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 267

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K G +D A +L + M++ GV PDA  Y++L+ G C   R+N A ELF +M   G   D F
Sbjct: 268 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 327

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +Y  LI+G+CK   +E ALSL+ EM+ KG+ P VVTY+
Sbjct: 328 TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 365



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/298 (33%), Positives = 170/298 (57%), Gaps = 7/298 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ P++YTYNIL+   C  GR+     V+G +  +   P+AVT+ +L+   C    +  A
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 107 AALFTKLRAFG-CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
             + + +R  G  KP++ T+ +++NGLC+ G    A  +F+EM            PD ++
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREG------LAPDVVS 118

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+  G CK G + ++  +F +M    + PDVVT+TSLI   C A +  +A  L  +M 
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 178

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++G++ N VTF  +++  CK G +D+A   +E M + G++P    YN L++G+C  GR++
Sbjct: 179 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 238

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A+EL   ME+     DV +Y  +I+GYCK   ++ A  L  +ML KG+ P  +TY++
Sbjct: 239 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 296



 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 178/331 (53%), Gaps = 6/331 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P + +FN +   L K    +    +F  +   GL PD+ +YN L++ +CK+G +    
Sbjct: 77  AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 136

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V   + +    PD VTFTSLI   C    + +A AL  ++R  G + +  T+T LI+G 
Sbjct: 137 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 196

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    AL   EEM     +  VVC      Y+ + +G CK G +D A+EL  +M+ +
Sbjct: 197 CKKGFLDDALLAVEEMRKCGIQPSVVC------YNALINGYCKLGRMDLARELIREMEAK 250

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PDVVTY+++I G+C   + + A  L  +M+ +GV P+ +T++ ++  LC+  ++++A
Sbjct: 251 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 310

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L E M+Q+GV+PD   Y TL+DG C  G V +A  L   M   G + DV +Y +LING
Sbjct: 311 CELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLING 370

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             K+   + A  L  ++  +   P  + Y+ 
Sbjct: 371 LSKSARTKEAHRLLFKLYHEDPVPDNIKYDA 401



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 174/384 (45%), Gaps = 57/384 (14%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R     P V S+N L     K       L++F  +   GL PD+ T+  LI+  
Sbjct: 103 VFDEMVR-EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHAT 161

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     ++ ++       + VTFT+LI G C +  + +A     ++R  G +P V
Sbjct: 162 CKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSV 221

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  LING C+ G   +A  L  EM           KPD +TYSTI  G CK G +D A
Sbjct: 222 VCYNALINGYCKLGRMDLARELIREMEAKR------VKPDVVTYSTIISGYCKVGNLDSA 275

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L  KM  + + PD +TY+SLIRG C     N+A  LF  M+  GVQP+  T+  +++ 
Sbjct: 276 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 335

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD-------------------------- 276
            CK G +++A  L + MI+ GV PD   Y+ L++                          
Sbjct: 336 HCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPD 395

Query: 277 ------------------------GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
                                   GFC+ G +  A +++ SM       D   Y ILI+G
Sbjct: 396 NIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHG 455

Query: 313 YCKNKEIEGALSLYSEMLSKGIRP 336
           +C+   +  ALS + +ML  G  P
Sbjct: 456 HCRGGNVRKALSFHKQMLRSGFSP 479



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 167/338 (49%), Gaps = 21/338 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L     K    D    L + + +  + PD+ TY+ +I+ +CK+G +   F +
Sbjct: 219 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 278

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L+    PDA+T++SLI+GLC E R+ +A  LF  +   G +PD FTYTTLI+G C+
Sbjct: 279 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCK 338

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL+L +EM       GV+  PD +TYS + +GL K     +A  L  K+  E+ 
Sbjct: 339 EGNVEKALSLHDEMIRK----GVL--PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDP 392

Query: 195 NPDVVTY---------------TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            PD + Y                +L++GFC      EA  ++  M+D+  + +   ++++
Sbjct: 393 VPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSIL 452

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+ G + +A    + M++ G  P+++   +L+ G    G V  A      + +   
Sbjct: 453 IHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCP 512

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           + D  +   LI+   K   ++  + +   M   G+ P+
Sbjct: 513 LADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPS 550



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M    + P+V TY  L+R  C      EA  +  +M   G  PN VT+N ++   C+ G+
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 249 MDEASRLLELMIQIG-VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           +D A R++ LM + G  +P+   +N++++G C  GR+  A+++F  M   G   DV SY 
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            L++GYCK   +  +L+++SEM  +G+ P VVT+ +
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 156


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 187/331 (56%), Gaps = 11/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYD---TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P   ++N L     +    D    V+SL +   +    P+L T+N ++N  CK GR+   
Sbjct: 185 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAK--PNLVTFNSMVNGLCKAGRMEGA 242

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             V   ++R    PD V++ +L+ G C    + E+ A+F+++   G  PDV T+T+LI+ 
Sbjct: 243 RKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHA 302

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+ G+   A+ L  +M     E G+  + + +T++ + DG CK+GF+D A     +M+ 
Sbjct: 303 TCKAGNLEQAVALVAQMR----ERGL--RMNEVTFTALIDGFCKKGFLDDALLAVEEMRK 356

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             I P VV Y +LI G+C     + A+ L  EM  + V+P+VVT++ I++  CK G +D 
Sbjct: 357 CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDS 416

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A +L + M++ GV PDA  Y++L+ G C   R+N A ELF +M   G   D F+Y  LI+
Sbjct: 417 AFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLID 476

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G+CK   +E ALSL+ EM+ KG+ P VVTY+
Sbjct: 477 GHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507



 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 186/334 (55%), Gaps = 16/334 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKR-LNSI---GLFPDLYTYNILINCFCKMGRVSP 70
           P V ++N +   L+     D  L   +R L+S+   G+ P++YTYNIL+   C  GR+  
Sbjct: 116 PSVPAYNAVLLALS-----DASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEE 170

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLI 129
              V+G +  +   P+AVT+ +L+   C    +  A  + + +R  G  KP++ T+ +++
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           NGLC+ G    A  +F+EM            PD ++Y+T+  G CK G + ++  +F +M
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREG------LAPDVVSYNTLLSGYCKVGCLHESLAVFSEM 284

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               + PDVVT+TSLI   C A +  +A  L  +M ++G++ N VTF  +++  CK G +
Sbjct: 285 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+A   +E M + G++P    YN L++G+C  GR++ A+EL   ME+     DV +Y  +
Sbjct: 345 DDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 404

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+GYCK   ++ A  L  +ML KG+ P  +TY++
Sbjct: 405 ISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 438



 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 178/331 (53%), Gaps = 6/331 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P + +FN +   L K    +    +F  +   GL PD+ +YN L++ +CK+G +    
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 278

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V   + +    PD VTFTSLI   C    + +A AL  ++R  G + +  T+T LI+G 
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    AL   EEM     +  VVC      Y+ + +G CK G +D A+EL  +M+ +
Sbjct: 339 CKKGFLDDALLAVEEMRKCGIQPSVVC------YNALINGYCKLGRMDLARELIREMEAK 392

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PDVVTY+++I G+C   + + A  L  +M+ +GV P+ +T++ ++  LC+  ++++A
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L E M+Q+GV+PD   Y TL+DG C  G V +A  L   M   G + DV +Y +LING
Sbjct: 453 CELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLING 512

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             K+   + A  L  ++  +   P  + Y+ 
Sbjct: 513 LSKSARTKEAHRLLFKLYHEDPVPDNIKYDA 543



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 174/384 (45%), Gaps = 57/384 (14%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R     P V S+N L     K       L++F  +   GL PD+ T+  LI+  
Sbjct: 245 VFDEMVR-EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHAT 303

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     ++ ++       + VTFT+LI G C +  + +A     ++R  G +P V
Sbjct: 304 CKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSV 363

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  LING C+ G   +A  L  EM           KPD +TYSTI  G CK G +D A
Sbjct: 364 VCYNALINGYCKLGRMDLARELIREMEAKR------VKPDVVTYSTIISGYCKVGNLDSA 417

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L  KM  + + PD +TY+SLIRG C     N+A  LF  M+  GVQP+  T+  +++ 
Sbjct: 418 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 477

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD-------------------------- 276
            CK G +++A  L + MI+ GV PD   Y+ L++                          
Sbjct: 478 HCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPD 537

Query: 277 ------------------------GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
                                   GFC+ G +  A +++ SM       D   Y ILI+G
Sbjct: 538 NIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHG 597

Query: 313 YCKNKEIEGALSLYSEMLSKGIRP 336
           +C+   +  ALS + +ML  G  P
Sbjct: 598 HCRGGNVRKALSFHKQMLRSGFSP 621



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 138/312 (44%), Gaps = 56/312 (17%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L     K    D    L + + +  + PD+ TY+ +I+ +CK+G +   F +
Sbjct: 361 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 420

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L+    PDA+T++SLI+GLC E R+ +A  LF  +   G +PD FTYTTLI+G C+
Sbjct: 421 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCK 480

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL--------------------- 173
            G+   AL+L +EM       GV+  PD +TYS + +GL                     
Sbjct: 481 EGNVEKALSLHDEMIRK----GVL--PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDP 534

Query: 174 -----------------------------CKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
                                        C +G + +A +++  M D N   D   Y+ L
Sbjct: 535 VPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSIL 594

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I G C   +  +A     +M+  G  PN  +   ++  L + G + EA   ++ ++    
Sbjct: 595 IHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCP 654

Query: 265 RPDASVYNTLMD 276
             DA     L+D
Sbjct: 655 LADAEASKALID 666


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/414 (31%), Positives = 197/414 (47%), Gaps = 80/414 (19%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR     P + S N     +A++     V S F R+   G   + P ++TY ILI
Sbjct: 40  VFDELLRRGIGAP-IRSLNGALADVARDNPAAAV-SRFNRMARAGASMVTPTVHTYGILI 97

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK-LRAFGC 118
            C C  GR+  GF  LG +++  F  + + F  L+KGLCA+ R  +A  +  + +    C
Sbjct: 98  GCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSC 157

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF++T ++ GLC    +  AL L   MA+  G     C P+ ++YST+ DGL K G 
Sbjct: 158 VPNVFSHTIILKGLCHENRSQEALELLHMMADDGGG----CLPNVVSYSTVIDGLLKGGD 213

Query: 179 VDKAKELFLKMKDENINPDVV-----------------------------------TYTS 203
            DKA   + +M D  I P+VV                                   TYTS
Sbjct: 214 PDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTS 273

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+ GFC +    EA     +M   GV+PNVVT++  M+ LCKNG+  EA ++ + M++ G
Sbjct: 274 LVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRG 333

Query: 264 VRPDASVYNTLMDGFCL-----------------------------------TGRVNRAK 288
           ++PD + Y++L+ G+ +                                    G+V+ A 
Sbjct: 334 LKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAM 393

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +F  M   G   +  +Y  LINGYCK   +E AL+L+ EM+S G+ P  +TYN
Sbjct: 394 LVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYN 447



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 156/322 (48%), Gaps = 10/322 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL--NSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P V S  I+   L         L L   +  +  G  P++ +Y+ +I+   K G     +
Sbjct: 159 PNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAY 218

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
                +L     P+ V ++S+I  LC    + +A  +  ++   G  P+ FTYT+L++G 
Sbjct: 219 ATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGF 278

Query: 133 CRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           C +G    A+   E+M +NG        +P+ +TYS+  D LCK G   +A+++F  M  
Sbjct: 279 CSSGQLTEAIKFLEKMCSNG-------VEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVK 331

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             + PD+ TY+SL+ G+       E   LF  M+   +QP+   FN ++    K GK+DE
Sbjct: 332 RGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDE 391

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  +   M Q G++P+   Y+TL++G+C   R+  A  LF  M SNG   +  +Y I++ 
Sbjct: 392 AMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQ 451

Query: 312 GYCKNKEIEGALSLYSEMLSKG 333
           G  +      A   Y +++  G
Sbjct: 452 GLFRTGRTATAKEFYVQIIKSG 473



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 145/309 (46%), Gaps = 30/309 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++ +   L K    D   + ++ +    + P++  Y+ +I   CK   +     V
Sbjct: 196 PNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEV 255

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++++  TP+  T+TSL+ G C+  ++ EA     K+ + G +P+V TY++ ++ LC+
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK 315

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F+ M           KPD  TYS++  G   EG + +   LF  M   ++
Sbjct: 316 NGRCTEARKIFDSMVKRG------LKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDM 369

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   + +LI         +EA  +F +M  QG++PN VT++ ++N  CK  +M+ A  
Sbjct: 370 QPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALA 429

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV---------------------- 292
           L + M+  GV P+   YN ++ G   TGR   AKE +V                      
Sbjct: 430 LFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSGKKDLIEQGLLEELDDL 489

Query: 293 --SMESNGC 299
             SME N C
Sbjct: 490 FLSMEDNDC 498



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P V TY  LI   C A   +        ++ +G +   + FN ++  LC + + D+A 
Sbjct: 86  VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAM 145

Query: 254 RL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--ESNGCMRDVFSYGILI 310
            + L  M ++   P+   +  ++ G C   R   A EL   M  +  GC+ +V SY  +I
Sbjct: 146 DIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVI 205

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G  K  + + A + Y EML + I P VV Y++
Sbjct: 206 DGLLKGGDPDKAYATYREMLDRRILPNVVIYSS 238



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M++    P     FN L    AK    D  + +F ++   GL P+  TY+ LIN +
Sbjct: 360 LFDLMVQSDMQPDHYV-FNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGY 418

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           CK+ R+     +   ++ +  +P+ +T+  +++GL    R   A   + ++   G K
Sbjct: 419 CKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSGKK 475


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 175/325 (53%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++  +   LAKNK     ++L +++ + G  P + TYN L+N  CKMGR+     +L +I
Sbjct: 36  TYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 95

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           + +  TPD VT+TSLI GL  + R  EA  LF ++ + G   D   YT LI GL + G  
Sbjct: 96  VDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKI 155

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A ++++ M +        C PD +T ST+ DGLCK G +  A  +F  M+   + P+ 
Sbjct: 156 PQASSVYKTMTSQG------CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNE 209

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V Y++LI G C A   + A  +  +M      P+ +T+N++++ LCK+G +  A    + 
Sbjct: 210 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDE 269

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M++ G +PD   YN L+ GFC  G  + A  +F  M S+ C  +V +YG LI+G CK ++
Sbjct: 270 MLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQ 329

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           +  A   Y  M  +G  P    Y++
Sbjct: 330 LTKASLYYQHMKERGCPPDSFVYSS 354



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 167/325 (51%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +F+IL   L K        SL +   + G   D++TY  +++   K  ++     ++ +I
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
             +  TP   T+ +L+ GLC   R+ EA  L  K+   GC PDV TYT+LI+GL +   +
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LF+EMA+       VC      Y+ +  GL + G + +A  ++  M  +   PDV
Sbjct: 121 FEAYKLFKEMASRGLALDTVC------YTALIRGLLQAGKIPQASSVYKTMTSQGCVPDV 174

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VT +++I G C A     A  +F  M  +G+ PN V ++ +++ LCK  KMD A  +L  
Sbjct: 175 VTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ 234

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M +    PD   YN L+DG C +G V  A+  F  M   GC  DV++Y ILI+G+CK   
Sbjct: 235 MKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGN 294

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
            + A  ++ +M S    P VVTY T
Sbjct: 295 TDAACGVFDDMSSSRCSPNVVTYGT 319



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 142/280 (50%), Gaps = 8/280 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + + +   L K       + +FK + + GL P+   Y+ LI+  CK  ++     +
Sbjct: 172 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 231

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ ++  TPD +T+  LI GLC    +  A A F ++   GCKPDV+TY  LI+G C+
Sbjct: 232 LAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCK 291

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+T  A  +F++M++        C P+ +TY T+  GLCK   + KA   +  MK+   
Sbjct: 292 AGNTDAACGVFDDMSSSR------CSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGC 345

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   Y+SL+ G C +        LF EM   GV  N  T   ++  LCK  ++DEA  
Sbjct: 346 PPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVS 404

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           L   + + G+ P    YN+++     +G+VN  + ++  M
Sbjct: 405 LFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEM 443


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 178/328 (54%), Gaps = 9/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   + K+  +   + +   + + G  P++ TYN++IN  C+ GRV      
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 268

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+    F PD V++T+++KGLCA  R  +   LF ++    C P+  T+  L+   CR
Sbjct: 269 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 328

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ + E+M+ G+G     C  +    + + + +CK+G VD A +    M     
Sbjct: 329 GGMVERAIQVLEQMS-GHG-----CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGC 382

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD ++YT++++G C A  W +AK L  EM+ +   PN VTFN  +  LC+ G +++A+ 
Sbjct: 383 SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATM 442

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M + G   +   YN L++GFC+ GRV+ A ELF SM    C  +  +Y  L+ G C
Sbjct: 443 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLC 499

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             + ++ A  L +EML K   P VVT+N
Sbjct: 500 NAERLDAAAELLAEMLQKDCAPNVVTFN 527



 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 165/298 (55%), Gaps = 11/298 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G   D++ YN L+  +C+ G++     ++  +      PDA T+T +I+GLC   R+ EA
Sbjct: 139 GTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEA 195

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAIT 165
            +L   +   GC+P V TYT L+  +C++     A+ + +EM A G       C P+ +T
Sbjct: 196 LSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG-------CTPNIVT 248

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ I +G+C+EG VD A+E   ++      PD V+YT++++G C A  W + + LF EMM
Sbjct: 249 YNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 308

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++   PN VTF++++   C+ G ++ A ++LE M   G   + ++ N +++  C  GRV+
Sbjct: 309 EKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 368

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A +   +M S GC  D  SY  ++ G C+ +  E A  L  EM+ K   P  VT+NT
Sbjct: 369 DAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 426



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 171/406 (42%), Gaps = 72/406 (17%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R     P + ++N++   + +    D       RL+S G  PD  +Y  ++   
Sbjct: 233 VLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 291

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK--------------------------- 95
           C   R      +   ++     P+ VTF  L++                           
Sbjct: 292 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT 351

Query: 96  --------GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
                    +C + R+ +A      + ++GC PD  +YTT++ GLCR      A  L +E
Sbjct: 352 TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKE 411

Query: 148 MANGN-------------------------------GEFGVVCKPDAITYSTITDGLCKE 176
           M   N                                E G  C+ + +TY+ + +G C +
Sbjct: 412 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG--CEVNIVTYNALVNGFCVQ 469

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G VD A ELF  M      P+ +TYT+L+ G C A   + A  L  EM+ +   PNVVTF
Sbjct: 470 GRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTF 526

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           NV+++  C+ G MDEA  L+E M++ G  P+   YNTL+DG         A EL   + S
Sbjct: 527 NVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVS 586

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           NG   D+ +Y  +I    +   +E A+ ++  +   G+RP  V YN
Sbjct: 587 NGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYN 632



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 157/323 (48%), Gaps = 9/323 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           NI+   + K    D        + S G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 355 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 414

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P+ VTF + I  LC +  I +A  L  ++   GC+ ++ TY  L+NG C  G    
Sbjct: 415 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 474

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL LF         + + CKP+ ITY+T+  GLC    +D A EL  +M  ++  P+VVT
Sbjct: 475 ALELF---------YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 525

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           +  L+  FC     +EA  L  +MM+ G  PN++T+N +++ + K+   +EA  LL  ++
Sbjct: 526 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLV 585

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             GV PD   Y++++       RV  A ++F  ++  G       Y  ++   CK    +
Sbjct: 586 SNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTD 645

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
           GA+  ++ M+S G  P  +TY T
Sbjct: 646 GAIDFFAYMVSNGCMPNELTYIT 668



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 119/249 (47%), Gaps = 9/249 (3%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
           PD    T LI+ LC   R  +AA +       G   DVF Y TL+ G CR G    A  L
Sbjct: 107 PDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRL 166

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
              M            PDA TY+ I  GLC  G V +A  L   M      P VVTYT L
Sbjct: 167 IASMP---------VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVL 217

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           +   C +  + +A  +  EM  +G  PN+VT+NVI+N +C+ G++D+A   L  +   G 
Sbjct: 218 LEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGF 277

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
           +PD   Y T++ G C   R    +ELF  M    CM +  ++ +L+  +C+   +E A+ 
Sbjct: 278 QPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQ 337

Query: 325 LYSEMLSKG 333
           +  +M   G
Sbjct: 338 VLEQMSGHG 346



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 115/237 (48%), Gaps = 9/237 (3%)

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           AA L  +  + G  PDV+  T LI  LCR G T  A  +                 D   
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAV------DVFA 146

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+  G C+ G +D A+ L   M    + PD  TYT +IRG C      EA  L  +M+
Sbjct: 147 YNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 203

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            +G QP+VVT+ V++  +CK+    +A  +L+ M   G  P+   YN +++G C  GRV+
Sbjct: 204 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 263

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A+E    + S G   D  SY  ++ G C  K  E    L++EM+ K   P  VT++
Sbjct: 264 DAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 320



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 147/296 (49%), Gaps = 18/296 (6%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN     L +    +    L ++++  G   ++ TYN L+N FC  GRV     
Sbjct: 418 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 477

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +   C  P+ +T+T+L+ GLC   R+  AA L  ++    C P+V T+  L++  C
Sbjct: 478 LFYSM--PC-KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFC 534

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ L E+M     E G  C P+ ITY+T+ DG+ K+   ++A EL   +    
Sbjct: 535 QKGLMDEAIELVEQMM----EHG--CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 588

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           ++PD+VTY+S+I      +   EA  +F  + D G++P  V +N I+  LCK    D A 
Sbjct: 589 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 648

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
                M+  G  P+   Y TL++G         A E F+  E+   +R++ S G+L
Sbjct: 649 DFFAYMVSNGCMPNELTYITLIEGL--------ANEDFLK-ETRDLLRELCSRGVL 695



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 6/218 (2%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P  P   ++  L   L   +  D    L   +      P++ T+N+L++ FC+ G +   
Sbjct: 483 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 542

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             ++ +++    TP+ +T+ +L+ G+  +    EA  L   L + G  PD+ TY+++I  
Sbjct: 543 IELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 602

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           L R      A+ +F  +     + G+  +P A+ Y+ I   LCK    D A + F  M  
Sbjct: 603 LSREDRVEEAIKMFHIVQ----DLGM--RPKAVIYNKILLALCKRCNTDGAIDFFAYMVS 656

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
               P+ +TY +LI G    +   E + L  E+  +GV
Sbjct: 657 NGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 694



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 58/138 (42%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P + ++N L   + K+ + +  L L   L S G+ PD+ TY+ +I    +  RV  
Sbjct: 552 HGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEE 611

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   +      P AV +  ++  LC       A   F  + + GC P+  TY TLI 
Sbjct: 612 AIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIE 671

Query: 131 GLCRTGHTIVALNLFEEM 148
           GL          +L  E+
Sbjct: 672 GLANEDFLKETRDLLREL 689


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 178/328 (54%), Gaps = 9/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   + K+  +   + +   + + G  P++ TYN++IN  C+ GRV      
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+    F PD V++T+++KGLCA  R  +   LF ++    C P+  T+  L+   CR
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ + E+M+ G+G     C  +    + + + +CK+G VD A +    M     
Sbjct: 298 GGMVERAIQVLEQMS-GHG-----CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGC 351

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD ++YT++++G C A  W +AK L  EM+ +   PN VTFN  +  LC+ G +++A+ 
Sbjct: 352 SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATM 411

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M + G   +   YN L++GFC+ GRV+ A ELF SM    C  +  +Y  L+ G C
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLC 468

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             + ++ A  L +EML K   P VVT+N
Sbjct: 469 NAERLDAAAELLAEMLQKDCAPNVVTFN 496



 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 165/298 (55%), Gaps = 11/298 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G   D++ YN L+  +C+ G++     ++  +      PDA T+T +I+GLC   R+ EA
Sbjct: 108 GTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEA 164

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAIT 165
            +L   +   GC+P V TYT L+  +C++     A+ + +EM A G       C P+ +T
Sbjct: 165 LSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG-------CTPNIVT 217

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ I +G+C+EG VD A+E   ++      PD V+YT++++G C A  W + + LF EMM
Sbjct: 218 YNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 277

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++   PN VTF++++   C+ G ++ A ++LE M   G   + ++ N +++  C  GRV+
Sbjct: 278 EKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 337

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A +   +M S GC  D  SY  ++ G C+ +  E A  L  EM+ K   P  VT+NT
Sbjct: 338 DAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 395



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 171/406 (42%), Gaps = 72/406 (17%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R     P + ++N++   + +    D       RL+S G  PD  +Y  ++   
Sbjct: 202 VLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 260

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK--------------------------- 95
           C   R      +   ++     P+ VTF  L++                           
Sbjct: 261 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT 320

Query: 96  --------GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
                    +C + R+ +A      + ++GC PD  +YTT++ GLCR      A  L +E
Sbjct: 321 TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKE 380

Query: 148 MANGN-------------------------------GEFGVVCKPDAITYSTITDGLCKE 176
           M   N                                E G  C+ + +TY+ + +G C +
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG--CEVNIVTYNALVNGFCVQ 438

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G VD A ELF  M      P+ +TYT+L+ G C A   + A  L  EM+ +   PNVVTF
Sbjct: 439 GRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTF 495

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           NV+++  C+ G MDEA  L+E M++ G  P+   YNTL+DG         A EL   + S
Sbjct: 496 NVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVS 555

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           NG   D+ +Y  +I    +   +E A+ ++  +   G+RP  V YN
Sbjct: 556 NGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYN 601



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 156/323 (48%), Gaps = 9/323 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           NI+   + K    D        + S G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 383

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P+ VTF + I  LC +  I +A  L  ++   GC+ ++ TY  L+NG C  G    
Sbjct: 384 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 443

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL LF         + + CKP+ ITY+T+  GLC    +D A EL  +M  ++  P+VVT
Sbjct: 444 ALELF---------YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 494

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           +  L+  FC     +EA  L  +MM+ G  PN++T+N +++ +  +   +EA  LL  ++
Sbjct: 495 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLV 554

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             GV PD   Y++++       RV  A ++F  ++  G       Y  ++   CK    +
Sbjct: 555 SNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTD 614

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
           GA+  ++ M+S G  P  +TY T
Sbjct: 615 GAIDFFAYMVSNGCMPNELTYIT 637



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 119/250 (47%), Gaps = 9/250 (3%)

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
            PD    T LI+ LC   R  +AA +       G   DVF Y TL+ G CR G    A  
Sbjct: 75  APDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARR 134

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L   M            PDA TY+ I  GLC  G V +A  L   M      P VVTYT 
Sbjct: 135 LIASMP---------VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV 185

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+   C +  + +A  +  EM  +G  PN+VT+NVI+N +C+ G++D+A   L  +   G
Sbjct: 186 LLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG 245

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            +PD   Y T++ G C   R    +ELF  M    CM +  ++ +L+  +C+   +E A+
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAI 305

Query: 324 SLYSEMLSKG 333
            +  +M   G
Sbjct: 306 QVLEQMSGHG 315



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 9/249 (3%)

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++ L A   + EAA L  +  + G  PDV+  T LI  LCR G T  A  +         
Sbjct: 50  LRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGT 109

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                   D   Y+T+  G C+ G +D A+ L   M    + PD  TYT +IRG C    
Sbjct: 110 AV------DVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGR 160

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
             EA  L  +M+ +G QP+VVT+ V++  +CK+    +A  +L+ M   G  P+   YN 
Sbjct: 161 VGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNV 220

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           +++G C  GRV+ A+E    + S G   D  SY  ++ G C  K  E    L++EM+ K 
Sbjct: 221 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 280

Query: 334 IRPTVVTYN 342
             P  VT++
Sbjct: 281 CMPNEVTFD 289



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 146/296 (49%), Gaps = 18/296 (6%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN     L +    +    L ++++  G   ++ TYN L+N FC  GRV     
Sbjct: 387 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +   C  P+ +T+T+L+ GLC   R+  AA L  ++    C P+V T+  L++  C
Sbjct: 447 LFYSM--PC-KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFC 503

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ L E+M     E G  C P+ ITY+T+ DG+  +   ++A EL   +    
Sbjct: 504 QKGLMDEAIELVEQMM----EHG--CTPNLITYNTLLDGITNDCNSEEALELLHGLVSNG 557

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           ++PD+VTY+S+I      +   EA  +F  + D G++P  V +N I+  LCK    D A 
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
                M+  G  P+   Y TL++G         A E F+  E+   +R++ S G+L
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEGL--------ANEDFLK-ETRDLLRELCSRGVL 664



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 6/218 (2%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P  P   ++  L   L   +  D    L   +      P++ T+N+L++ FC+ G +   
Sbjct: 452 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 511

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             ++ +++    TP+ +T+ +L+ G+  +    EA  L   L + G  PD+ TY+++I  
Sbjct: 512 IELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           L R      A+ +F  +     + G+  +P A+ Y+ I   LCK    D A + F  M  
Sbjct: 572 LSREDRVEEAIKMFHIVQ----DLGM--RPKAVIYNKILLALCKRCNTDGAIDFFAYMVS 625

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
               P+ +TY +LI G    +   E + L  E+  +GV
Sbjct: 626 NGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 32/137 (23%)

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N  +  L     + EA+RL++     G  PD  +   L+   C  GR + A  +  + E 
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER 106

Query: 297 NGCMRDVFSYGILINGYCKNKEIEG--------------------------------ALS 324
           +G   DVF+Y  L+ GYC+  +++                                 ALS
Sbjct: 107 SGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALS 166

Query: 325 LYSEMLSKGIRPTVVTY 341
           L  +ML +G +P+VVTY
Sbjct: 167 LLDDMLHRGCQPSVVTY 183



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 57/138 (41%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P + ++N L   +  + + +  L L   L S G+ PD+ TY+ +I    +  RV  
Sbjct: 521 HGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEE 580

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   +      P AV +  ++  LC       A   F  + + GC P+  TY TLI 
Sbjct: 581 AIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIE 640

Query: 131 GLCRTGHTIVALNLFEEM 148
           GL          +L  E+
Sbjct: 641 GLANEDFLKETRDLLREL 658


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 179/329 (54%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V  +NIL     K         +F  +   GL P   ++N LIN  CK   +  GF 
Sbjct: 220 PPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFR 279

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  +   PD  T++ LI GLC E R+  A  LF +++  G +P+  T+T LI+G C
Sbjct: 280 LKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQC 339

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R+     A+N + +M       GV  KPD + Y+T+ +GLCK G V+KA++L  +M+   
Sbjct: 340 RSRRIDSAMNTYHQMLT----MGV--KPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVG 393

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G+C   D   A  +   M ++GV  + V F  +++  C++G++ +A 
Sbjct: 394 MKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAE 453

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R L  M++ G++PD + Y  ++DG+C  G V    +L   M+ NG    V +Y +L+NG 
Sbjct: 454 RTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGL 513

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK  +++ A  L   ML+ G+ P  +TYN
Sbjct: 514 CKQGQMKNANMLLEAMLNLGVTPDDITYN 542



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 170/314 (54%), Gaps = 6/314 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   SFN L   L K+++ D    L K +    ++PD++TY++LI+  CK GR+     +
Sbjct: 256 PTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQL 315

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+ +TFT+LI G C   RI  A   + ++   G KPD+  Y TL+NGLC+
Sbjct: 316 FDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCK 375

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L +EM        V  KPD ITY+T+ DG CKEG ++ A E+   M +E +
Sbjct: 376 VGDVNKARKLVDEMR------MVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGV 429

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V +T+LI GFC      +A+    EM++ G++P+  T+ ++++  CK G +    +
Sbjct: 430 VLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFK 489

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M   G +P    YN LM+G C  G++  A  L  +M + G   D  +Y IL+ G+C
Sbjct: 490 LLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHC 549

Query: 315 KNKEIEGALSLYSE 328
           KN + E  L L +E
Sbjct: 550 KNGKAEDLLKLRNE 563



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 101/183 (55%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P    Y+ + +  CKEG +  AK +F +++   + P  V++ +LI G C + + +E   L
Sbjct: 221 PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRL 280

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
              M +  + P+V T++V+++ LCK G++D A +L + M Q G+RP+   +  L+DG C 
Sbjct: 281 KKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCR 340

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           + R++ A   +  M + G   D+  Y  L+NG CK  ++  A  L  EM   G++P  +T
Sbjct: 341 SRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKIT 400

Query: 341 YNT 343
           Y T
Sbjct: 401 YTT 403



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 9/201 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +RM    P   ++  L     K    ++ + + K +N  G+  D   +  LI+ FC+ GR
Sbjct: 389 MRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGR 448

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V      L  ++ +   PD  T+T +I G C +  +     L  +++  G KP V TY  
Sbjct: 449 VRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNV 508

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L+NGLC+ G    A  L E M N     GV   PD ITY+ + +G CK G   KA++L  
Sbjct: 509 LMNGLCKQGQMKNANMLLEAMLN----LGVT--PDDITYNILLEGHCKNG---KAEDLLK 559

Query: 188 KMKDENINPDVVTYTSLIRGF 208
              ++ +  D   YTSL+  +
Sbjct: 560 LRNEKGLIVDYAYYTSLVSEY 580



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 85/165 (51%)

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           GFV  A + F  +++ N          L+     +N        + E+++ G  P V  +
Sbjct: 167 GFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYY 226

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N+++N+ CK G + +A  +   + + G+RP    +NTL++G C +  ++    L  +ME 
Sbjct: 227 NILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEE 286

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           N    DVF+Y +LI+G CK   ++ A  L+ EM  +G+RP  +T+
Sbjct: 287 NRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITF 331


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 178/328 (54%), Gaps = 9/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   + K+  +   + +   + + G  P++ TYN++IN  C+ GRV      
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 237

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+    F PD V++T+++KGLCA  R  +   LF ++    C P+  T+  L+   CR
Sbjct: 238 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 297

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ + E+M+ G+G     C  +    + + + +CK+G VD A +    M     
Sbjct: 298 GGMVERAIQVLEQMS-GHG-----CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGC 351

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD ++YT++++G C A  W +AK L  EM+ +   PN VTFN  +  LC+ G +++A+ 
Sbjct: 352 SPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATM 411

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M + G   +   YN L++GFC+ GRV+ A ELF SM    C  +  +Y  L+ G C
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLC 468

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             + ++ A  L +EML K   P VVT+N
Sbjct: 469 NAERLDAAAELLAEMLQKDCAPNVVTFN 496



 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 165/298 (55%), Gaps = 11/298 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G   D++ YN L+  +C+ G++     ++  +      PDA T+T +I+GLC   R+ EA
Sbjct: 108 GTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEA 164

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAIT 165
            +L   +   GC+P V TYT L+  +C++     A+ + +EM A G       C P+ +T
Sbjct: 165 LSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG-------CTPNIVT 217

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ I +G+C+EG VD A+E   ++      PD V+YT++++G C A  W + + LF EMM
Sbjct: 218 YNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMM 277

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++   PN VTF++++   C+ G ++ A ++LE M   G   + ++ N +++  C  GRV+
Sbjct: 278 EKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD 337

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A +   +M S GC  D  SY  ++ G C+ +  E A  L  EM+ K   P  VT+NT
Sbjct: 338 DAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 395



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 171/406 (42%), Gaps = 72/406 (17%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R     P + ++N++   + +    D       RL+S G  PD  +Y  ++   
Sbjct: 202 VLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 260

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK--------------------------- 95
           C   R      +   ++     P+ VTF  L++                           
Sbjct: 261 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT 320

Query: 96  --------GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
                    +C + R+ +A      + ++GC PD  +YTT++ GLCR      A  L +E
Sbjct: 321 TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKE 380

Query: 148 MANGN-------------------------------GEFGVVCKPDAITYSTITDGLCKE 176
           M   N                                E G  C+ + +TY+ + +G C +
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG--CEVNIVTYNALVNGFCVQ 438

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G VD A ELF  M      P+ +TYT+L+ G C A   + A  L  EM+ +   PNVVTF
Sbjct: 439 GRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTF 495

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           NV+++  C+ G MDEA  L+E M++ G  P+   YNTL+DG         A EL   + S
Sbjct: 496 NVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVS 555

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           NG   D+ +Y  +I    +   +E A+ ++  +   G+RP  V YN
Sbjct: 556 NGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYN 601



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 157/323 (48%), Gaps = 9/323 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           NI+   + K    D        + S G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 383

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P+ VTF + I  LC +  I +A  L  ++   GC+ ++ TY  L+NG C  G    
Sbjct: 384 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 443

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL LF         + + CKP+ ITY+T+  GLC    +D A EL  +M  ++  P+VVT
Sbjct: 444 ALELF---------YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 494

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           +  L+  FC     +EA  L  +MM+ G  PN++T+N +++ + K+   +EA  LL  ++
Sbjct: 495 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLV 554

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             GV PD   Y++++       RV  A ++F  ++  G       Y  ++   CK    +
Sbjct: 555 SNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTD 614

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
           GA+  ++ M+S G  P  +TY T
Sbjct: 615 GAIDFFAYMVSNGCMPNELTYIT 637



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 119/250 (47%), Gaps = 9/250 (3%)

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
            PD    T LI+ LC   R  +AA +       G   DVF Y TL+ G CR G    A  
Sbjct: 75  APDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARR 134

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L   M            PDA TY+ I  GLC  G V +A  L   M      P VVTYT 
Sbjct: 135 LIASMP---------VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV 185

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+   C +  + +A  +  EM  +G  PN+VT+NVI+N +C+ G++D+A   L  +   G
Sbjct: 186 LLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG 245

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            +PD   Y T++ G C   R    +ELF  M    CM +  ++ +L+  +C+   +E A+
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAI 305

Query: 324 SLYSEMLSKG 333
            +  +M   G
Sbjct: 306 QVLEQMSGHG 315



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 9/249 (3%)

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++ L A   + EAA L  +  + G  PDV+  T LI  LCR G T  A  +         
Sbjct: 50  LRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGT 109

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                   D   Y+T+  G C+ G +D A+ L   M    + PD  TYT +IRG C    
Sbjct: 110 AV------DVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGR 160

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
             EA  L  +M+ +G QP+VVT+ V++  +CK+    +A  +L+ M   G  P+   YN 
Sbjct: 161 VGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNV 220

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           +++G C  GRV+ A+E    + S G   D  SY  ++ G C  K  E    L++EM+ K 
Sbjct: 221 IINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN 280

Query: 334 IRPTVVTYN 342
             P  VT++
Sbjct: 281 CMPNEVTFD 289



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 147/296 (49%), Gaps = 18/296 (6%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN     L +    +    L ++++  G   ++ TYN L+N FC  GRV     
Sbjct: 387 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +   C  P+ +T+T+L+ GLC   R+  AA L  ++    C P+V T+  L++  C
Sbjct: 447 LFYSM--PC-KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFC 503

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ L E+M     E G  C P+ ITY+T+ DG+ K+   ++A EL   +    
Sbjct: 504 QKGLMDEAIELVEQMM----EHG--CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 557

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           ++PD+VTY+S+I      +   EA  +F  + D G++P  V +N I+  LCK    D A 
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
                M+  G  P+   Y TL++G         A E F+  E+   +R++ S G+L
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEGL--------ANEDFLK-ETRDLLRELCSRGVL 664



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 6/218 (2%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P  P   ++  L   L   +  D    L   +      P++ T+N+L++ FC+ G +   
Sbjct: 452 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 511

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             ++ +++    TP+ +T+ +L+ G+  +    EA  L   L + G  PD+ TY+++I  
Sbjct: 512 IELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           L R      A+ +F  +     + G+  +P A+ Y+ I   LCK    D A + F  M  
Sbjct: 572 LSREDRVEEAIKMFHIVQ----DLGM--RPKAVIYNKILLALCKRCNTDGAIDFFAYMVS 625

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
               P+ +TY +LI G    +   E + L  E+  +GV
Sbjct: 626 NGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 32/137 (23%)

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N  +  L     + EA+RL++     G  PD  +   L+   C  GR + A  +  + E 
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER 106

Query: 297 NGCMRDVFSYGILINGYCKNKEIEG--------------------------------ALS 324
           +G   DVF+Y  L+ GYC+  +++                                 ALS
Sbjct: 107 SGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALS 166

Query: 325 LYSEMLSKGIRPTVVTY 341
           L  +ML +G +P+VVTY
Sbjct: 167 LLDDMLHRGCQPSVVTY 183



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 58/138 (42%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P + ++N L   + K+ + +  L L   L S G+ PD+ TY+ +I    +  RV  
Sbjct: 521 HGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEE 580

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   +      P AV +  ++  LC       A   F  + + GC P+  TY TLI 
Sbjct: 581 AIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIE 640

Query: 131 GLCRTGHTIVALNLFEEM 148
           GL          +L  E+
Sbjct: 641 GLANEDFLKETRDLLREL 658


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 173/329 (52%), Gaps = 7/329 (2%)

Query: 16  PVCSFNILFGCLAK-NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           PVC  + L   + K N+        +  +   G  P++Y +NIL++ FCK+G V    +V
Sbjct: 189 PVCGCDYLLRRVMKLNQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMV 248

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I R    P  V+F +LI G C    + E   L + + +    PDVFTY+ LINGLC+
Sbjct: 249 FDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCK 308

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF+EM     E G+V  P+ +T++T+ DG CK G +D A   F  MKD  I
Sbjct: 309 ESRVEEANGLFDEMC----EMGLV--PNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGI 362

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY +LI G C   D  EA+ L  EM+  G +P+ +TF  +M+  CK+G MD A  
Sbjct: 363 RPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALE 422

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M++ G+  D   +  L+ G C  GRV  A+ +   M S G   D  +Y ++I+ +C
Sbjct: 423 IKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFC 482

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  +++    L  EM   G  P VVTYN 
Sbjct: 483 KKGDVKMGAKLLKEMQRDGRVPGVVTYNA 511



 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 183/329 (55%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V  FNIL     K         +F  ++  GL P + ++N LI+ +C+   V  GFV
Sbjct: 223 PPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFV 282

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +     +PD  T+++LI GLC ESR+ EA  LF ++   G  P+  T+TTLI+G C
Sbjct: 283 LKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQC 342

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +AL  FE M +         +PD ITY+ + +GLC++G + +A++L  +M    
Sbjct: 343 KHGKIDLALRNFEIMKDRG------IRPDLITYNALINGLCRDGDLKEARKLLNEMIGNG 396

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD +T+T+L+ G C   D + A  +   M+++G++ + V F  +++ LC++G++ +A 
Sbjct: 397 FKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAE 456

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R+L+ M+  G +PD   Y  ++D FC  G V    +L   M+ +G +  V +Y  L+NG+
Sbjct: 457 RMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGF 516

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK  +++ A  L   ML+  + P  +T+N
Sbjct: 517 CKQGQMKNAKMLLHAMLNMEVVPNDITFN 545



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 6/302 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     ++K+ +    L   + S  + PD++TY+ LIN  CK  RV     +
Sbjct: 259 PSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGL 318

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+ VTFT+LI G C   +I  A   F  ++  G +PD+ TY  LINGLCR
Sbjct: 319 FDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCR 378

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  EM  GNG      KPD IT++T+ DG CK+G +D A E+  +M +E I
Sbjct: 379 DGDLKEARKLLNEMI-GNG-----FKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGI 432

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V +T+LI G C      +A+ +  +M+  G +P+  T+ ++++  CK G +   ++
Sbjct: 433 ELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAK 492

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G  P    YN LM+GFC  G++  AK L  +M +   + +  ++ IL++G+C
Sbjct: 493 LLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHC 552

Query: 315 KN 316
           K+
Sbjct: 553 KH 554


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 192/371 (51%), Gaps = 30/371 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD M+     PP V +++ L   L K +  +   ++ + +   G+ P+  TYNI+I 
Sbjct: 223 YFLFDEMIG-QGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIR 281

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +C +G++     +L ++  S   PD VT+  LI+  C   R  EA ++F  +   G KP
Sbjct: 282 GYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKP 341

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGN---------------GEFGVVCK----- 160
           +   Y  L++G    G  I   +L + M                    + G V K     
Sbjct: 342 NSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAF 401

Query: 161 ---------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    PD ++YST+   LCK G V+ A   F +M  E ++P+++++TSLI G C  
Sbjct: 402 TEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSI 461

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            +W + + L  EM+++G+ P+ +  N IM+ LCK G++ EA    +++I IGV+P+   Y
Sbjct: 462 GEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSY 521

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           NTL+DG+C  G+++ + + F  M S G   D ++Y  L+NGY KN  +E AL+LY EM  
Sbjct: 522 NTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFR 581

Query: 332 KGIRPTVVTYN 342
           K ++   +T N
Sbjct: 582 KDVKFCAITSN 592



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 130/388 (33%), Positives = 190/388 (48%), Gaps = 52/388 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDT-------VLSLFKRLNSIG---LFPDL 52
           +FD +L     P  V +FN +   +A+     +        +SLF  +   G   +  + 
Sbjct: 36  LFDELLP-QARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMARSGVNMMAANR 94

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FT 111
           Y   ILI CFC +GR+   F      L+  +    VT   LIKGLC   R  +A  + F 
Sbjct: 95  YIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMDMVFR 154

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTIT 170
           ++   G  PDVF+Y  LI GLC    +  AL L   M A+G    G  C P+ ++YSTI 
Sbjct: 155 RMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADG----GYNCSPNVVSYSTII 210

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           DG  KEG VDKA  LF +M  +   PDVVTY+SLI G C A   N+A+ +   M D+GV 
Sbjct: 211 DGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVM 270

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN  T+N+++   C  G+++EA RLL+ M   G++PD   Y  L+  +C  GR   A+ +
Sbjct: 271 PNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSV 330

Query: 291 FVSMESNGC----------------------MRDVF-------------SYGILINGYCK 315
           F SM   G                       +RD+              ++ ILI  Y K
Sbjct: 331 FDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAK 390

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  ++ A++ ++EM   G+RP VV+Y+T
Sbjct: 391 HGAVDKAMTAFTEMRQNGLRPDVVSYST 418



 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 175/340 (51%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R    P    +FNIL    AK+   D  ++ F  +   GL PD+ +Y+ +I+  
Sbjct: 365 LLDLMIR-DGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHIL 423

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+GRV        +++    +P+ ++FTSLI GLC+     +   L  ++   G  PD 
Sbjct: 424 CKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDA 483

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
               T+++ LC+ G  + A + F+ + +      +  KP+ ++Y+T+ DG C  G +D++
Sbjct: 484 IFMNTIMDNLCKEGRVVEAQDFFDMVIH------IGVKPNVVSYNTLIDGYCFVGKMDES 537

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            + F +M    + PD  TY +L+ G+       +A  L+ EM  + V+   +T N+I++ 
Sbjct: 538 IKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHG 597

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L + G++  A  L   M+  G +     YNT++ G C    V+ A  +F  + S     D
Sbjct: 598 LFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELD 657

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           V+++ I+IN   K   I+ A SL+S M+ +G  P V+TY+
Sbjct: 658 VWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYS 697



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 171/340 (50%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R    P       +L G   K    D V  L   +   G+  +   +NILI  +
Sbjct: 330 VFDSMVRKGQKPNSTIYHILLHGYATKGALID-VRDLLDLMIRDGIPFEHRAFNILICAY 388

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G V         + ++   PD V+++++I  LC   R+ +A   F ++ + G  P++
Sbjct: 389 AKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNI 448

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            ++T+LI+GLC  G       L  EM N          PDAI  +TI D LCKEG V +A
Sbjct: 449 ISFTSLIHGLCSIGEWKKVEELAFEMINRG------IHPDAIFMNTIMDNLCKEGRVVEA 502

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++ F  +    + P+VV+Y +LI G+C+    +E+   F  M+  G++P+  T+N ++N 
Sbjct: 503 QDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNG 562

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             KNG++++A  L   M +  V+  A   N ++ G    GR+  A+EL++ M   G    
Sbjct: 563 YFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLR 622

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +Y  ++ G C+N  ++ AL ++ ++ SK     V T+N
Sbjct: 623 IETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFN 662



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 174/330 (52%), Gaps = 12/330 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSL-FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           + N L   L   K  D  + + F+R+  +G  PD+++YN LI   C   +      +L  
Sbjct: 131 TLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLH 190

Query: 78  ILR----SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +      +C +P+ V+++++I G   E  + +A  LF ++   G  PDV TY++LI+GLC
Sbjct: 191 MTADGGYNC-SPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLC 249

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A+N  E +     + GV+  P+  TY+ +  G C  G +++A  L  KM    
Sbjct: 250 KAQ----AMNKAEAILQHMFDKGVM--PNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSG 303

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PDVVTY  LI+ +C      EA+ +F  M+ +G +PN   ++++++     G + +  
Sbjct: 304 LQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVR 363

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL+LMI+ G+  +   +N L+  +   G V++A   F  M  NG   DV SY  +I+  
Sbjct: 364 DLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHIL 423

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK   +E A+  +++M+S+G+ P ++++ +
Sbjct: 424 CKIGRVEDAVYHFNQMVSEGLSPNIISFTS 453



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 161/345 (46%), Gaps = 12/345 (3%)

Query: 5   DYMLRMHPS---PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF---PDLYTYNIL 58
           D + R  P     P V S+N L   L   K     L L   + + G +   P++ +Y+ +
Sbjct: 150 DMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTI 209

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           I+ F K G V   + +   ++   F PD VT++SLI GLC    + +A A+   +   G 
Sbjct: 210 IDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGV 269

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+  TY  +I G C  G    A+ L ++M+ G+G      +PD +TY  +    CK G 
Sbjct: 270 MPNTRTYNIMIRGYCSLGQLEEAVRLLKKMS-GSG-----LQPDVVTYILLIQYYCKIGR 323

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
             +A+ +F  M  +   P+   Y  L+ G+       + + L   M+  G+      FN+
Sbjct: 324 CAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNI 383

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++    K+G +D+A      M Q G+RPD   Y+T++   C  GRV  A   F  M S G
Sbjct: 384 LICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEG 443

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              ++ S+  LI+G C   E +    L  EM+++GI P  +  NT
Sbjct: 444 LSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNT 488



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 140/325 (43%), Gaps = 29/325 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + SF  L   L     +  V  L   + + G+ PD    N +++  CK GRV      
Sbjct: 446 PNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDF 505

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+ V++ +LI G C   ++ E+   F ++ + G +PD +TY  L+NG  +
Sbjct: 506 FDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFK 565

Query: 135 TGHTIVALNLFEEMANGNGEF---------------GVVCKPDAI--------------T 165
            G    AL L+ EM   + +F               G +     +              T
Sbjct: 566 NGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIET 625

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+  GLC+   VD+A  +F  ++ +    DV T+  +I         +EAK LF  M+
Sbjct: 626 YNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMV 685

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            +G  P+V+T+++++    + G ++E+  L   M + G   D+ + N ++      G V 
Sbjct: 686 LRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVR 745

Query: 286 RAKELFVSMESNGCMRDVFSYGILI 310
           RA      ++      +  +  +LI
Sbjct: 746 RAGTYLTKIDEKNFSVEASTAALLI 770


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 181/328 (55%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN+L G   +    +  L  +K +    + PD+ +++ LI  F + G +      
Sbjct: 262 PDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEY 321

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD V +T +I G C    ++EA  +  ++ AFGC PDV TY TL+NGLC+
Sbjct: 322 LREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCK 381

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  L+  EE+ N   E GV   PD  T++T+  G C++G ++KA + F  + D+ +
Sbjct: 382 ERR----LSDAEELLNEMKERGV--PPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRL 435

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY +LI G C   D  +A  L+ +M  + + PN VT++++++  C+ G++D A  
Sbjct: 436 RPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFA 495

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ M+  G+ P+   YN+++ G+C +G V++ ++    M  +  M D+ +Y  LI+GY 
Sbjct: 496 FLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYV 555

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K  ++  A +L   M ++ ++P  VTYN
Sbjct: 556 KEGKMHEAFNLLKIMENENVQPDAVTYN 583



 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 173/327 (52%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SF+ L G   +    D      + +   GL PD   Y ++I  FC+ G +     V
Sbjct: 297 PDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRV 356

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD VT+ +L+ GLC E R+ +A  L  +++  G  PD+ T+TTLI+G CR
Sbjct: 357 RDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCR 416

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL  F+ +++         +PD +TY+T+ DG+C++G + KA EL+  M    I
Sbjct: 417 DGNIEKALQFFDTISDQR------LRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREI 470

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY+ LI   C     + A     EM+++G+ PN++T+N I+   C++G + +  +
Sbjct: 471 FPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQ 530

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  M    V PD   YNTL+ G+   G+++ A  L   ME+     D  +Y ++I+G+ 
Sbjct: 531 FLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFS 590

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +  ++ A  +Y +M ++GI P   TY
Sbjct: 591 VHGNMQEADWVYKKMGARGIEPDRYTY 617



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 180/360 (50%), Gaps = 41/360 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           + NI+     K   +  V ++   +    +FPD+ T+N++++   + G V     ++  +
Sbjct: 161 TLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSM 220

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P  VT+ S++KGL    R  +A  +F  + A G  PDV ++  LI G CR G  
Sbjct: 221 VSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGEL 280

Query: 139 IVALNLFEEMANGN-------------------------------GEFGVVCKPDAITYS 167
             AL  ++EM                                    EFG++  PD + Y+
Sbjct: 281 EEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLM--PDGVIYT 338

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENIN----PDVVTYTSLIRGFCYANDWNEAKCLFIE 223
            +  G C+ G + +A    L+++DE +     PDVVTY +L+ G C     ++A+ L  E
Sbjct: 339 MVIGGFCRAGLMLEA----LRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNE 394

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M ++GV P++ TF  +++  C++G +++A +  + +    +RPD   YNTL+DG C  G 
Sbjct: 395 MKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGD 454

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +A EL+  M S     +  +Y ILI+ +C+  +++ A +   EM++KGI P ++TYN+
Sbjct: 455 LGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNS 514



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 142/288 (49%), Gaps = 6/288 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K +       L   +   G+ PDL T+  LI+ +C+ G +      
Sbjct: 367 PDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQF 426

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I      PD VT+ +LI G+C +  + +A  L+  + +    P+  TY+ LI+  C 
Sbjct: 427 FDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCE 486

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A    +EM N     G+V  P+ +TY++I  G C+ G V K ++   KM+ + +
Sbjct: 487 KGQVDNAFAFLDEMVNK----GIV--PNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKV 540

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY +LI G+      +EA  L   M ++ VQP+ VT+N+I++    +G M EA  
Sbjct: 541 MPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADW 600

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           + + M   G+ PD   Y ++++G  + G   ++ +L   M   G   D
Sbjct: 601 VYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 134/266 (50%), Gaps = 6/266 (2%)

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           +L S    +  T   ++   C   +  E   + +++      PDV T+  +++   R G 
Sbjct: 150 VLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGD 209

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A+ L + M +         KP  +TY+++  GL + G  DKA+E+F  M    + PD
Sbjct: 210 VEAAMALIDSMVSKG------IKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPD 263

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V ++  LI GFC A +  EA   + EM  + V P+VV+F+ ++    + G+MD A+  L 
Sbjct: 264 VRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLR 323

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M + G+ PD  +Y  ++ GFC  G +  A  +   M + GC+ DV +Y  L+NG CK +
Sbjct: 324 EMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKER 383

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  A  L +EM  +G+ P + T+ T
Sbjct: 384 RLSDAEELLNEMKERGVPPDLCTFTT 409



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 127/254 (50%), Gaps = 6/254 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP +C+F  L     ++ + +  L  F  ++   L PD+ TYN LI+  C+ G +     
Sbjct: 401 PPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANE 460

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      P+ VT++ LI   C + ++  A A   ++   G  P++ TY ++I G C
Sbjct: 461 LWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYC 520

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R+G+         +M +          PD ITY+T+  G  KEG + +A  L   M++EN
Sbjct: 521 RSGNVSKGQQFLPKMRHDK------VMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENEN 574

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTY  +I GF    +  EA  ++ +M  +G++P+  T+  ++N     G   ++ 
Sbjct: 575 VQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSF 634

Query: 254 RLLELMIQIGVRPD 267
           +L + M+Q G+ PD
Sbjct: 635 QLHDEMLQKGLAPD 648



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 65/148 (43%)

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P    +  LIR +  +    EA   F  ++D  V       N ++  L + G     +  
Sbjct: 87  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALSRAGWPHLTADA 146

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
             L++      +    N ++  +C T +      +   ME      DV ++ ++++   +
Sbjct: 147 YRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFR 206

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++E A++L   M+SKGI+P +VTYN+
Sbjct: 207 AGDVEAAMALIDSMVSKGIKPGLVTYNS 234


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 177/324 (54%), Gaps = 9/324 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+ I+   L K++  D  ++LFK++    ++PD+ TY  LI+   K  RV   + +
Sbjct: 203 PNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDL 262

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLC 133
                     P  VT+ ++I GLC   RI  A  L+  + R    KPD+FTY+ LINGL 
Sbjct: 263 FEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLN 322

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            +     A  L+EEM +        C PD +TY+T+ DGLCK G  DKA E+F KM   N
Sbjct: 323 LSNRGEKAYELYEEMLDTG------CSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGN 376

Query: 194 I-NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           + +P+V+TYT LI  FC  +   +A  L  EM  + + P+ VTF  ++ +LCK  ++DEA
Sbjct: 377 VCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEA 436

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L E  I    +PD+ ++NT++ G+C   R++ AK+L   M  +GC   + +Y  L+ G
Sbjct: 437 HELFE-SIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTG 495

Query: 313 YCKNKEIEGALSLYSEMLSKGIRP 336
           +C+      AL +Y EM+  G  P
Sbjct: 496 FCRTGRYSDALIMYHEMIEMGFPP 519



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 159/291 (54%), Gaps = 10/291 (3%)

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
           +T N L++ + K  RV    +     +++ F PD V++ +L+ G      + +A ALF +
Sbjct: 103 FTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGE 162

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           ++  G    + ++  ++ GLC  G   +A  +F++M+        +  P+ I+Y+ + DG
Sbjct: 163 MKDSGIAV-LRSHNIVLRGLCSGGKISMAWEVFKDMSG-------IFSPNLISYTIMIDG 214

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           LCK   VDKA  LF +M D+ I PDVVTY +LI G        EA  LF E   +G  P 
Sbjct: 215 LCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPT 274

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMI-QIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           VVT+N +++ LCK G+++ A  L + M+ +  ++PD   Y+ L++G  L+ R  +A EL+
Sbjct: 275 VVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELY 334

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI-RPTVVTY 341
             M   GC  DV +Y  L++G CK+   + A+ ++ +M    +  P V+TY
Sbjct: 335 EEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITY 385



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 136/284 (47%), Gaps = 32/284 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K +       LF+   + G  P + TYN +I+  CK GR+     +
Sbjct: 238 PDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTL 297

Query: 75  LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
              ++R     PD  T+++LI GL   +R  +A  L+ ++   GC PDV TY TL++GLC
Sbjct: 298 YDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLC 357

Query: 134 RTGHTIVALNLFEEMANGN-------------------GEFGVVCK-----------PDA 163
           ++G    A+ +F +M  GN                      G   K           PDA
Sbjct: 358 KSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDA 417

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +T++T+   LCKE  +D+A ELF  +  +   PD V + +++ G+C     ++AK L   
Sbjct: 418 VTFTTVIQKLCKESRIDEAHELFESI-GKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDR 476

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           M+D G  P + T+  ++   C+ G+  +A  +   MI++G  P+
Sbjct: 477 MLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE 520



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 149/302 (49%), Gaps = 10/302 (3%)

Query: 44  NSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI-LRSCFTPDAVTFTSLIKGLCAESR 102
            S+GL+ D+   +++     ++   +  + V      +S FT +  T  +L+       R
Sbjct: 58  KSLGLYGDILVPDLVGKVIHRIPDPNTAWEVFQWAGKQSKFTHNRFTCNNLLSVYVKARR 117

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + +A   F        +PD  +Y TL+NG  + G    AL LF EM +     G+     
Sbjct: 118 VEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDS----GIAV--- 170

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
             +++ +  GLC  G +  A E+F  M     +P++++YT +I G C +   ++A  LF 
Sbjct: 171 LRSHNIVLRGLCSGGKISMAWEVFKDMSG-IFSPNLISYTIMIDGLCKSRKVDKAITLFK 229

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           +M+D+ + P+VVT+  +++ L K  ++ EA  L E     G  P    YNT++DG C  G
Sbjct: 230 QMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCG 289

Query: 283 RVNRAKELFVSMESNGCMR-DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           R+  A  L+  M     ++ D+F+Y  LING   +   E A  LY EML  G  P VVTY
Sbjct: 290 RIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTY 349

Query: 342 NT 343
           NT
Sbjct: 350 NT 351



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 8/231 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D M+R     P + +++ L   L  +   +    L++ +   G  PD+ TYN L++  
Sbjct: 297 LYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGL 356

Query: 63  CKMGRVSPGFVVLGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           CK G       +  ++ + +   P+ +T+T LI   C   R+ +A  L  ++      PD
Sbjct: 357 CKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPD 416

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             T+TT+I  LC+      A  LFE +       G  CKPD++ ++T+  G CK   +D 
Sbjct: 417 AVTFTTVIQKLCKESRIDEAHELFESI-------GKTCKPDSVLFNTMLAGYCKITRIDD 469

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           AK+L  +M D    P + TYT+L+ GFC    +++A  ++ EM++ G  P 
Sbjct: 470 AKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE 520


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 175/325 (53%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++  +   LAKNK     ++L +++ + G  P + TYN L+N  CKMGR+     +L +I
Sbjct: 167 TYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 226

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           + +  TPD VT+TSLI GL  E R  EA  LF ++   G   D   YT LI GL + G  
Sbjct: 227 VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKI 286

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A ++++ M +        C PD +T ST+ DGLCK G +  A  +F  M+   + P+ 
Sbjct: 287 PQASSVYKTMTSQG------CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNE 340

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V Y++LI G C A   + A  +  +M      P+ +T+N++++ LCK+G ++ A    + 
Sbjct: 341 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDE 400

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M++ G +PD   YN L+ GFC  G  + A  +F  M S+ C  +V +YG LI+G CK ++
Sbjct: 401 MLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQ 460

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           +  A   +  M  +G  P    Y++
Sbjct: 461 LTKASLYFQHMKERGCPPDSFVYSS 485



 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 110/331 (33%), Positives = 180/331 (54%), Gaps = 11/331 (3%)

Query: 15  PPVCSFNILFG--CLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCFCKMGRVSPG 71
           P V ++N+L    CLA+    +   ++ + +    G+ P L T+N++++  CK G+V   
Sbjct: 92  PDVETWNVLITGYCLAREP--EEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAA 149

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
                    +  T D  T+T+++  L    +I +A AL  K+ A GC P + TY  L+NG
Sbjct: 150 MDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNG 209

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LC+ G    A++L  ++ + NG     C PD +TY+++ DGL KE    +A +LF +M  
Sbjct: 210 LCKMGRLEEAIDLLRKIVD-NG-----CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMAL 263

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             +  D V YT+LIRG   A    +A  ++  M  QG  P+VVT + +++ LCK G++  
Sbjct: 264 RGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGA 323

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A R+ + M   G+ P+  VY+ L+ G C   +++ A E+   M+   C  D  +Y ILI+
Sbjct: 324 AVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILID 383

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G CK+ ++E A + + EML  G +P V TYN
Sbjct: 384 GLCKSGDVEAARAFFDEMLEAGCKPDVYTYN 414



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 175/343 (51%), Gaps = 6/343 (1%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +   M   +   P + + N++   L K+      +  F+   + G   D++TY  +++
Sbjct: 114 FAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVD 173

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K  ++     ++ +I  +  TP   T+ +L+ GLC   R+ EA  L  K+   GC P
Sbjct: 174 WLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTP 233

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV TYT+LI+GL +   +  A  LF+EMA      G+V   D + Y+ +  GL + G + 
Sbjct: 234 DVVTYTSLIDGLGKEKRSFEAYKLFKEMA----LRGLVL--DTVCYTALIRGLLQAGKIP 287

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  ++  M  +   PDVVT +++I G C A     A  +F  M  +G+ PN V ++ ++
Sbjct: 288 QASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 347

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK  KMD A  +L  M +    PD   YN L+DG C +G V  A+  F  M   GC 
Sbjct: 348 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCK 407

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            DV++Y IL++G+CK    + A  ++ +M S    P VVTY T
Sbjct: 408 PDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGT 450



 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 139/271 (51%), Gaps = 8/271 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + + +   L K       + +FK + + GL P+   Y+ LI+  CK  ++     +
Sbjct: 303 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 362

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ ++  TPD +T+  LI GLC    +  A A F ++   GCKPDV+TY  L++G C+
Sbjct: 363 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCK 422

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+T  A  +F++M++ +      C P+ +TY T+  GLCK   + KA   F  MK+   
Sbjct: 423 AGNTDAACGVFDDMSSSH------CSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGC 476

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   Y+SL+ G C +    E  C+  + M++    N  T   ++  LCK  ++DEA  
Sbjct: 477 PPDSFVYSSLVDGLCKSGKL-EGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVS 535

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           L   + + G+ P    YN+++     + +VN
Sbjct: 536 LFNAIRKEGM-PHPYAYNSIISTLIKSAKVN 565



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 115/261 (44%), Gaps = 5/261 (1%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           F     T  +L+       R  EA  L     A    PDV T+  LI G C       A 
Sbjct: 55  FQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAF 114

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            +  EM     ++GV   P   T++ +  GLCK G V  A + F          D+ TYT
Sbjct: 115 AVIREMEE---DYGVA--PSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYT 169

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           +++          +A  L  ++   G  P + T+N ++N LCK G+++EA  LL  ++  
Sbjct: 170 AIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN 229

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G  PD   Y +L+DG     R   A +LF  M   G + D   Y  LI G  +  +I  A
Sbjct: 230 GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQA 289

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
            S+Y  M S+G  P VVT +T
Sbjct: 290 SSVYKTMTSQGCVPDVVTLST 310


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  207 bits (526), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 170/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K+          +R+ + G  PD +TYN +I+ +CK   +     +
Sbjct: 182 PDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATEL 241

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   +   F PD VT+ SLI GLCAE  +  A  LF + +A   KPD+  Y +L+ GLCR
Sbjct: 242 LKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCR 301

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + AL +  EM          C PD  TY+ + +GLCK G +  A  +      +  
Sbjct: 302 QGLILHALQVMNEMVEDG------CHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGY 355

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV T+ ++I G+C     + A  L   M   G+ P+ +T+N ++N LCK GK  E + 
Sbjct: 356 LPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNE 415

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             E MI  G RP+A  YN L++ FC   ++  A  + V M  +G + D  S+  LI+G+C
Sbjct: 416 TFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFC 475

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +N +++GA  L+ ++  KG   T  T+N
Sbjct: 476 RNGDLDGAYLLFQKLDEKGYSATADTFN 503



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 185/376 (49%), Gaps = 43/376 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD MLR     P V +FN +   L +        +L  ++   G+  + +T NI I   
Sbjct: 102 LFDEMLR-RDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGL 160

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR+    V L   + +   PD VT+ +L++GLC +S++ EAA    ++   GC PD 
Sbjct: 161 CEGGRLEEA-VALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDD 219

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FTY T+I+G C+      A  L ++        G V  PD +TY ++ +GLC EG V++A
Sbjct: 220 FTYNTIIDGYCKRDMLQEATELLKDAIFK----GFV--PDRVTYCSLINGLCAEGDVERA 273

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ELF + + +++ PD+V Y SL++G C       A  +  EM++ G  P++ T+N+++N 
Sbjct: 274 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVING 333

Query: 243 LCKNG-----------------------------------KMDEASRLLELMIQIGVRPD 267
           LCK G                                   K+D A +L+E M   G+ PD
Sbjct: 334 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPD 393

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
           A  YN++++G C  G+     E F  M   GC  +  +Y ILI  +CK  ++E A  +  
Sbjct: 394 AITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIV 453

Query: 328 EMLSKGIRPTVVTYNT 343
            M   G+ P  +++NT
Sbjct: 454 RMSQDGLVPDTISFNT 469



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 181/361 (50%), Gaps = 41/361 (11%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           P+    ++ G  A    YD    LF  +    +FPD+ T+N +++  C+ G +     +L
Sbjct: 80  PLAYCTVVRGLYAHGHGYDA-RHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALL 138

Query: 76  GRILR----------------------------------SCFTPDAVTFTSLIKGLCAES 101
            ++L+                                  +   PD VT+ +L++GLC +S
Sbjct: 139 AKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTYNTLMRGLCKDS 198

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
           ++ EAA    ++   GC PD FTY T+I+G C+      A  L ++        G V  P
Sbjct: 199 KVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFK----GFV--P 252

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           D +TY ++ +GLC EG V++A ELF + + +++ PD+V Y SL++G C       A  + 
Sbjct: 253 DRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVM 312

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            EM++ G  P++ T+N+++N LCK G + +A+ ++   I  G  PD   +NT++DG+C  
Sbjct: 313 NEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKR 372

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +++ A +L   M   G   D  +Y  ++NG CK  + +     + EM+ KG RP  +TY
Sbjct: 373 LKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITY 432

Query: 342 N 342
           N
Sbjct: 433 N 433



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 161/325 (49%), Gaps = 6/325 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L +       L +   +   G  PD++TYNI+IN  CKMG +S   VV
Sbjct: 287 PDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVV 346

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +   +   + PD  TF ++I G C   ++  A  L  ++  +G  PD  TY +++NGLC+
Sbjct: 347 MNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCK 406

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G        FEEM          C+P+AITY+ + +  CK   +++A  + ++M  + +
Sbjct: 407 AGKAKEVNETFEEMILKG------CRPNAITYNILIENFCKINQLEEASGVIVRMSQDGL 460

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +++ +LI GFC   D + A  LF ++ ++G      TFN+++        M  A +
Sbjct: 461 VPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEK 520

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   MI  G +PD   Y  L+DG C    V+RA      M S G +  + ++G ++N   
Sbjct: 521 IFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLA 580

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
            N  +  A+++   M+  G+ P VV
Sbjct: 581 MNHRVSEAVAIIHIMVRMGVVPEVV 605



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 163/327 (49%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   L      +  L LF    +  L PDL  YN L+   C+ G +     V
Sbjct: 252 PDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQV 311

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++     PD  T+  +I GLC    I +AA +       G  PDVFT+ T+I+G C+
Sbjct: 312 MNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCK 371

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L E M      +G+   PDAITY+++ +GLCK G   +  E F +M  +  
Sbjct: 372 RLKLDSALQLVERM----WMYGIA--PDAITYNSVLNGLCKAGKAKEVNETFEEMILKGC 425

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +TY  LI  FC  N   EA  + + M   G+ P+ ++FN +++  C+NG +D A  
Sbjct: 426 RPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYL 485

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + + + G    A  +N L+  +     +  A+++F  M S G   D+++Y +L++G C
Sbjct: 486 LFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSC 545

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K   ++ A    +EM+SKG  P++ T+
Sbjct: 546 KAANVDRAYVHLAEMVSKGFVPSMATF 572



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 169/399 (42%), Gaps = 75/399 (18%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR------ 67
           PP   ++N +   L    ++D    ++ R+ S G+ PD  T+ + I  FC  GR      
Sbjct: 7   PPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALR 66

Query: 68  -----------VSP--------GFVVLGR----------ILRSCFTPDAVTFTSLIKGLC 98
                      V P        G    G           +LR    PD  TF +++  LC
Sbjct: 67  LLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALC 126

Query: 99  AESRIMEAAALFTK-------LRAFGCK---------------------------PDVFT 124
            +  IME+ AL  K       +  F C                            PDV T
Sbjct: 127 QKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVT 186

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y TL+ GLC+      A      M N        C PD  TY+TI DG CK   + +A E
Sbjct: 187 YNTLMRGLCKDSKVQEAAQYLRRMMNQG------CIPDDFTYNTIIDGYCKRDMLQEATE 240

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L      +   PD VTY SLI G C   D   A  LF E   + ++P++V +N ++  LC
Sbjct: 241 LLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLC 300

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           + G +  A +++  M++ G  PD   YN +++G C  G ++ A  +       G + DVF
Sbjct: 301 RQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVF 360

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  +I+GYCK  +++ AL L   M   GI P  +TYN+
Sbjct: 361 TFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNS 399



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 144/301 (47%), Gaps = 7/301 (2%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           ++  G  P    YN +++             V  R+L +   PDA T T  IK  C   R
Sbjct: 1   MDLFGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGR 60

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
              A  L   L   GC      Y T++ GL   GH   A +LF+EM   +        PD
Sbjct: 61  PHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRD------VFPD 114

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
             T++ +   LC++G + ++  L  K+    ++ +  T    IRG C      EA  L +
Sbjct: 115 VATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVAL-V 173

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           E MD  + P+VVT+N +M  LCK+ K+ EA++ L  M+  G  PD   YNT++DG+C   
Sbjct: 174 ESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRD 233

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  A EL       G + D  +Y  LING C   ++E AL L++E  +K ++P +V YN
Sbjct: 234 MLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYN 293

Query: 343 T 343
           +
Sbjct: 294 S 294



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 109/260 (41%), Gaps = 41/260 (15%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           + M+   P   ++N +   L K      V   F+ +   G  P+  TYNILI  FCK+ +
Sbjct: 385 MWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQ 444

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     V+ R+ +    PD ++F +LI G C    +  A  LF KL   G      T+  
Sbjct: 445 LEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNI 504

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI       +  +A  +F EM +         KPD  TY  + DG CK   VD+A     
Sbjct: 505 LIGAYSSKLNMQMAEKIFGEMISKG------YKPDLYTYRVLVDGSCKAANVDRA----- 553

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
                        Y  L                  EM+ +G  P++ TF  ++N L  N 
Sbjct: 554 -------------YVHL-----------------AEMVSKGFVPSMATFGRVLNSLAMNH 583

Query: 248 KMDEASRLLELMIQIGVRPD 267
           ++ EA  ++ +M+++GV P+
Sbjct: 584 RVSEAVAIIHIMVRMGVVPE 603


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 177/337 (52%), Gaps = 6/337 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++ +    P V S++ +     +    D V  L + +   GL P+ Y Y  +I   C++ 
Sbjct: 271 LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRIC 330

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +++        ++R    PD V +T+LI G C    I  A+  F ++ +    PDV TYT
Sbjct: 331 KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 390

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            +I+G C+ G  + A  LF EM      F    +PD++T++ + +G CK G +  A  + 
Sbjct: 391 AIISGFCQIGDMVEAGKLFHEM------FCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 444

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M     +P+VVTYT+LI G C   D + A  L  EM   G+QPN+ T+N I+N LCK+
Sbjct: 445 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 504

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++EA +L+      G+  D   Y TLMD +C +G +++A+E+   M   G    + ++
Sbjct: 505 GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTF 564

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L+NG+C +  +E    L + ML+KGI P   T+N+
Sbjct: 565 NVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNS 601



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 183/339 (53%), Gaps = 7/339 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M+R    P  V  +  L     K          F  ++S  + PD+ TY  +I+ FC
Sbjct: 339 FSEMIRQGILPDTVV-YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFC 397

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++G +     +   +      PD+VTFT LI G C    + +A  +   +   GC P+V 
Sbjct: 398 QIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVV 457

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TYTTLI+GLC+ G    A  L  EM      + +  +P+  TY++I +GLCK G +++A 
Sbjct: 458 TYTTLIDGLCKEGDLDSANELLHEM------WKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L  + +   +N D VTYT+L+  +C + + ++A+ +  EM+ +G+QP +VTFNV+MN  
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 571

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C +G +++  +LL  M+  G+ P+A+ +N+L+  +C+   +  A  ++  M S G   D 
Sbjct: 572 CLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDG 631

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +Y  L+ G+CK + ++ A  L+ EM  KG   +V TY+
Sbjct: 632 KTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYS 670



 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 169/309 (54%), Gaps = 6/309 (1%)

Query: 35  TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94
           T + +F+    +G+  ++ +YNI+I+  C++GR+     +L  +    +TPD +++++++
Sbjct: 229 TAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV 288

Query: 95  KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            G C    + +   L   ++  G KP+ + Y ++I  LCR      A   F EM      
Sbjct: 289 NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ--- 345

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
            G++  PD + Y+T+ DG CK G +  A + F +M   +I PDV+TYT++I GFC   D 
Sbjct: 346 -GIL--PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 402

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            EA  LF EM  +G++P+ VTF  ++N  CK G M +A R+   MIQ G  P+   Y TL
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DG C  G ++ A EL   M   G   ++F+Y  ++NG CK+  IE A+ L  E  + G+
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522

Query: 335 RPTVVTYNT 343
               VTY T
Sbjct: 523 NADTVTYTT 531



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 178/326 (54%), Gaps = 6/326 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S+NI+   + +         L   +   G  PD+ +Y+ ++N +C+ G +   + ++ 
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + R    P++  + S+I  LC   ++ EA   F+++   G  PD   YTTLI+G C+ G
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A   F EM + +        PD +TY+ I  G C+ G + +A +LF +M  + + P
Sbjct: 366 DIRAASKFFYEMHSRD------ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEP 419

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VT+T LI G+C A    +A  +   M+  G  PNVVT+  +++ LCK G +D A+ LL
Sbjct: 420 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 479

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M +IG++P+   YN++++G C +G +  A +L    E+ G   D  +Y  L++ YCK+
Sbjct: 480 HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 539

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
            E++ A  +  EML KG++PT+VT+N
Sbjct: 540 GEMDKAQEILKEMLGKGLQPTIVTFN 565



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 165/332 (49%), Gaps = 8/332 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F Y +      P V ++  +     +         LF  +   GL PD  T+  LIN +C
Sbjct: 373 FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 432

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G +   F V   ++++  +P+ VT+T+LI GLC E  +  A  L  ++   G +P++F
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 492

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-CKPDAITYSTITDGLCKEGFVDKA 182
           TY +++NGLC++G+        EE     GEF       D +TY+T+ D  CK G +DKA
Sbjct: 493 TYNSIVNGLCKSGN-------IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 545

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +E+  +M  + + P +VT+  L+ GFC      + + L   M+ +G+ PN  TFN ++ +
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C    +  A+ + + M   GV PD   Y  L+ G C    +  A  LF  M+  G    
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS 665

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           V +Y +LI G+ K K+   A  ++ +M  +G+
Sbjct: 666 VSTYSVLIKGFLKRKKFLEAREVFDQMRREGL 697


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 172/329 (52%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+  +            V+ L K +   GL P+LYTY+ +I   CK G+V  G  V
Sbjct: 143 PDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKV 202

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD V +T+LI G C       A  LF+++ A    PD   ++ LI GL  
Sbjct: 203 LREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSG 262

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G  + A  LF EM     E      PD +TY+ + DG CK G + KA  L  +M    +
Sbjct: 263 SGKVVEADKLFNEMIKKGFE------PDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGL 316

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTYT+L  G C + + + A  L  EM  +G+Q N+ T+N I+N LCK G + +A +
Sbjct: 317 TPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVK 376

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M + G+ PD   Y TLMD +  TG + +A+EL   M   G    V ++ +L+NG C
Sbjct: 377 LMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLC 436

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + ++E    L   ML KGI P   TYN+
Sbjct: 437 MSGKLEDGERLLKWMLEKGIMPNAATYNS 465



 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 180/341 (52%), Gaps = 41/341 (12%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
            + + +   G+FPD   Y  LI+ FCK+G     + +   +      PD++ F++LI GL
Sbjct: 201 KVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGL 260

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
               +++EA  LF ++   G +PD  TYT LI+G C+ G    A  L  +M     + G+
Sbjct: 261 SGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMV----QIGL 316

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKM---------------------------- 189
              P+ +TY+ + DGLCK G +D A EL  +M                            
Sbjct: 317 T--PNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQA 374

Query: 190 -------KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
                  K+  ++PD +TYT+L+  +    +  +A+ L  EM+D+G+QP VVTFNV+MN 
Sbjct: 375 VKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNG 434

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC +GK+++  RLL+ M++ G+ P+A+ YN++M  +C+   +  + E++  M + G + D
Sbjct: 435 LCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPD 494

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y ILI G+CK + ++ A  L+ EM+ K    T  +YN 
Sbjct: 495 SNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNA 535



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/324 (33%), Positives = 174/324 (53%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+NIL   L +         L  R+   G  PD+ +Y  +I+ +C +G +     ++  +
Sbjct: 112 SYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEM 171

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+  T++S+I  LC   +++E   +  ++   G  PD   YTTLI+G C+ G+T
Sbjct: 172 QLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNT 231

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LF EM            PD+I +S +  GL   G V +A +LF +M  +   PD 
Sbjct: 232 QAAYKLFSEMEARE------IVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDE 285

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTYT+LI G+C   +  +A  L  +M+  G+ PNVVT+  + + LCK+G++D A+ LL  
Sbjct: 286 VTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHE 345

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + G++ + S YNT+++G C  G + +A +L   M+  G   D  +Y  L++ Y K  E
Sbjct: 346 MCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGE 405

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           +  A  L  EML +G++PTVVT+N
Sbjct: 406 MVKARELLREMLDRGLQPTVVTFN 429



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 172/326 (52%), Gaps = 7/326 (2%)

Query: 19  SFNILFGCLA-KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           S N+   CL+ K      VL +F     +G+  +  +YNIL+N   ++G++     +L R
Sbjct: 76  SCNLYLTCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMR 135

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           +      PD V++T++I G C    + +   L  +++  G KP+++TY+++I  LC++G 
Sbjct: 136 MEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGK 195

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
            +    +  EM    G F     PD + Y+T+ DG CK G    A +LF +M+   I PD
Sbjct: 196 VVEGEKVLREMMK-RGVF-----PDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPD 249

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + +++LI G   +    EA  LF EM+ +G +P+ VT+  +++  CK G+M +A  L  
Sbjct: 250 SIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHN 309

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M+QIG+ P+   Y  L DG C +G ++ A EL   M   G   ++ +Y  ++NG CK  
Sbjct: 310 QMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAG 369

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            I  A+ L  EM   G+ P  +TY T
Sbjct: 370 NILQAVKLMEEMKEAGLHPDTITYTT 395



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 165/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F+ L   L+ +        LF  +   G  PD  TY  LI+ +CK+G +   F +
Sbjct: 248 PDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFL 307

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++++   TP+ VT+T+L  GLC    +  A  L  ++   G + ++ TY T++NGLC+
Sbjct: 308 HNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCK 367

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+ + A+ L EEM     E G+   PD ITY+T+ D   K G + KA+EL  +M D  +
Sbjct: 368 AGNILQAVKLMEEMK----EAGL--HPDTITYTTLMDAYYKTGEMVKARELLREMLDRGL 421

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VVT+  L+ G C +    + + L   M+++G+ PN  T+N IM + C    M  ++ 
Sbjct: 422 QPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTE 481

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M   GV PD++ YN L+ G C    +  A  L   M          SY  LI G+ 
Sbjct: 482 IYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFF 541

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K K++  A  L+ EM  +G+  +   YN
Sbjct: 542 KRKKLLEARQLFEEMRREGLVASAEIYN 569



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 132/260 (50%), Gaps = 7/260 (2%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI-VA 141
           +  D   F    + L     + EA   F KL  +G      +    +  L      + + 
Sbjct: 35  WGSDPHVFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMV 94

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
           L +F E      + GV    +  +Y+ + + L + G + +A  L ++M+ +   PDVV+Y
Sbjct: 95  LKVFSEFP----QLGVCWNTE--SYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSY 148

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           T++I G+C+  +  +   L  EM  +G++PN+ T++ I+  LCK+GK+ E  ++L  M++
Sbjct: 149 TTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMK 208

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            GV PD  +Y TL+DGFC  G    A +LF  ME+   + D  ++  LI G   + ++  
Sbjct: 209 RGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVE 268

Query: 322 ALSLYSEMLSKGIRPTVVTY 341
           A  L++EM+ KG  P  VTY
Sbjct: 269 ADKLFNEMIKKGFEPDEVTY 288


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 174/329 (52%), Gaps = 6/329 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V S++ +     +    D V  L + +   GL P+ Y Y  +I   C++ +++     
Sbjct: 722  PDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEA 781

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               ++R    PD V +T+LI G C    I  A+  F ++ +    PDV TYT +I+G C+
Sbjct: 782  FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 841

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G  + A  LF EM      F    +PD++T++ + +G CK G +  A  +   M     
Sbjct: 842  IGDMVEAGKLFHEM------FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGC 895

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            +P+VVTYT+LI G C   D + A  L  EM   G+QPN+ T+N I+N LCK+G ++EA +
Sbjct: 896  SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 955

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+      G+  D   Y TLMD +C +G +++A+E+   M   G    + ++ +L+NG+C
Sbjct: 956  LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFC 1015

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  +E    L + ML+KGI P   T+N+
Sbjct: 1016 LHGMLEDGEKLLNWMLAKGIAPNATTFNS 1044



 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 183/339 (53%), Gaps = 7/339 (2%)

Query: 4    FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
            F  M+R    P  V  +  L     K          F  ++S  + PD+ TY  +I+ FC
Sbjct: 782  FSEMIRQGILPDTVV-YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFC 840

Query: 64   KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            ++G +     +   +      PD+VTFT LI G C    + +A  +   +   GC P+V 
Sbjct: 841  QIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVV 900

Query: 124  TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            TYTTLI+GLC+ G    A  L  EM      + +  +P+  TY++I +GLCK G +++A 
Sbjct: 901  TYTTLIDGLCKEGDLDSANELLHEM------WKIGLQPNIFTYNSIVNGLCKSGNIEEAV 954

Query: 184  ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +L  + +   +N D VTYT+L+  +C + + ++A+ +  EM+ +G+QP +VTFNV+MN  
Sbjct: 955  KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 1014

Query: 244  CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            C +G +++  +LL  M+  G+ P+A+ +N+L+  +C+   +  A  ++  M S G   D 
Sbjct: 1015 CLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDG 1074

Query: 304  FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  L+ G+CK + ++ A  L+ EM  KG   +V TY+
Sbjct: 1075 KTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYS 1113



 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 169/309 (54%), Gaps = 6/309 (1%)

Query: 35  TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94
           T + +F+    +G+  ++ +YNI+I+  C++GR+     +L  +    +TPD +++++++
Sbjct: 672 TAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV 731

Query: 95  KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            G C    + +   L   ++  G KP+ + Y ++I  LCR      A   F EM      
Sbjct: 732 NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ--- 788

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
            G++  PD + Y+T+ DG CK G +  A + F +M   +I PDV+TYT++I GFC   D 
Sbjct: 789 -GIL--PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 845

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            EA  LF EM  +G++P+ VTF  ++N  CK G M +A R+   MIQ G  P+   Y TL
Sbjct: 846 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 905

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DG C  G ++ A EL   M   G   ++F+Y  ++NG CK+  IE A+ L  E  + G+
Sbjct: 906 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 965

Query: 335 RPTVVTYNT 343
               VTY T
Sbjct: 966 NADTVTYTT 974



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 178/326 (54%), Gaps = 6/326 (1%)

Query: 17   VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
            V S+NI+   + +         L   +   G  PD+ +Y+ ++N +C+ G +   + ++ 
Sbjct: 689  VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 748

Query: 77   RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
             + R    P++  + S+I  LC   ++ EA   F+++   G  PD   YTTLI+G C+ G
Sbjct: 749  VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 808

Query: 137  HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
                A   F EM + +        PD +TY+ I  G C+ G + +A +LF +M  + + P
Sbjct: 809  DIRAASKFFYEMHSRD------ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEP 862

Query: 197  DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            D VT+T LI G+C A    +A  +   M+  G  PNVVT+  +++ LCK G +D A+ LL
Sbjct: 863  DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 922

Query: 257  ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
              M +IG++P+   YN++++G C +G +  A +L    E+ G   D  +Y  L++ YCK+
Sbjct: 923  HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 982

Query: 317  KEIEGALSLYSEMLSKGIRPTVVTYN 342
             E++ A  +  EML KG++PT+VT+N
Sbjct: 983  GEMDKAQEILKEMLGKGLQPTIVTFN 1008



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 156/297 (52%), Gaps = 8/297 (2%)

Query: 39   LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
            LF  +   GL PD  T+  LIN +CK G +   F V   ++++  +P+ VT+T+LI GLC
Sbjct: 851  LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 910

Query: 99   AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             E  +  A  L  ++   G +P++FTY +++NGLC++G+        EE     GEF   
Sbjct: 911  KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN-------IEEAVKLVGEFEAA 963

Query: 159  -CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
                D +TY+T+ D  CK G +DKA+E+  +M  + + P +VT+  L+ GFC      + 
Sbjct: 964  GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDG 1023

Query: 218  KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
            + L   M+ +G+ PN  TFN ++ + C    +  A+ + + M   GV PD   Y  L+ G
Sbjct: 1024 EKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKG 1083

Query: 278  FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
             C    +  A  LF  M+  G    V +Y +LI G+ K K+   A  ++ +M  +G+
Sbjct: 1084 HCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL 1140


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 177/332 (53%), Gaps = 12/332 (3%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P   P  S    F  + K K    V+ +   L   G  PD+ TYN+LI+ +CK G +   
Sbjct: 90  PDIIPCTSLIRGFCRIGKTKKATWVMEI---LEQSGAVPDVITYNVLISGYCKSGEIDNA 146

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             VL R+      PD VT+ ++++ LC   ++ +A  +  +     C PDV TYT LI  
Sbjct: 147 LQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEA 203

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+      A+ L +EM N         KPD +TY+ + +G+CKEG +D+A +    M  
Sbjct: 204 TCKESGVGQAMKLLDEMRNKGS------KPDVVTYNVLINGICKEGRLDEAIKFLNNMPS 257

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               P+V+T+  ++R  C    W +A+ L  +M+ +G  P+VVTFN+++N LC+ G +  
Sbjct: 258 YGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGR 317

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  +LE M   G  P++  YN L+ GFC   +++RA E    M S GC  D+ +Y  L+ 
Sbjct: 318 AIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLT 377

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             CK+ +++ A+ + +++ SKG  P ++TYNT
Sbjct: 378 ALCKDGKVDVAVEILNQLSSKGCSPVLITYNT 409



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 174/337 (51%), Gaps = 9/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +L    + P V ++N+L     K+   D  L +  R+N   + PD+ TYN ++   C  G
Sbjct: 117 ILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSG 173

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++     VL R L+    PD +T+T LI+  C ES + +A  L  ++R  G KPDV TY 
Sbjct: 174 KLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYN 233

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LING+C+ G    A+     M +    +G  C+P+ IT++ I   +C  G    A++L 
Sbjct: 234 VLINGICKEGRLDEAIKFLNNMPS----YG--CQPNVITHNIILRSMCSTGRWMDAEKLL 287

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M  +  +P VVT+  LI   C       A  +  +M   G  PN +++N +++  CK 
Sbjct: 288 SDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKE 347

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            KMD A   L++M+  G  PD   YNTL+   C  G+V+ A E+   + S GC   + +Y
Sbjct: 348 KKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITY 407

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +I+G  K  + E A+ L  EM  KG++P ++TY++
Sbjct: 408 NTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSS 444



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 168/327 (51%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL     K       + L   + + G  PD+ TYN+LIN  CK GR+      
Sbjct: 192 PDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF 251

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ +T   +++ +C+  R M+A  L + +   GC P V T+  LIN LCR
Sbjct: 252 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 311

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+++ E+M          C P++++Y+ +  G CKE  +D+A E    M     
Sbjct: 312 QGLLGRAIDILEKMPMHG------CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGC 365

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY +L+   C     + A  +  ++  +G  P ++T+N +++ L K GK + A +
Sbjct: 366 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 425

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G++PD   Y++L+ G    G+V+ A + F  +E  G   +  +Y  ++ G C
Sbjct: 426 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 485

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K+++ + A+   + M+SK  +PT  TY
Sbjct: 486 KSRQTDRAIDFLAYMISKRCKPTEATY 512



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R   S P V ++N+L   + K    D  +     + S G  P++ T+NI++   C  GR
Sbjct: 220 MRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 +L  +LR   +P  VTF  LI  LC +  +  A  +  K+   GC P+  +Y  
Sbjct: 280 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 339

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L++G C+      A+   + M +        C PD +TY+T+   LCK+G VD A E+  
Sbjct: 340 LLHGFCKEKKMDRAIEYLDIMVSRG------CYPDIVTYNTLLTALCKDGKVDVAVEILN 393

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++  +  +P ++TY ++I G         A  L  EM  +G++P+++T++ +++ L + G
Sbjct: 394 QLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREG 453

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+DEA +    +  +G+RP+A  YN++M G C + + +RA +    M S  C     +Y 
Sbjct: 454 KVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYT 513

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGI 334
           ILI G       + AL L +E+ S+G+
Sbjct: 514 ILIEGIAYEGLAKEALDLLNELCSRGL 540



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 148/304 (48%), Gaps = 26/304 (8%)

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G +  GF  L  ++     PD +  TSLI+G C   +  +A  +   L   G  PDV TY
Sbjct: 71  GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITY 130

Query: 126 TTLINGLCRTGHTIVALNLFEEMANG--------------------------NGEFGVVC 159
             LI+G C++G    AL + + M                             + +    C
Sbjct: 131 NVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKEC 190

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            PD ITY+ + +  CKE  V +A +L  +M+++   PDVVTY  LI G C     +EA  
Sbjct: 191 YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIK 250

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
               M   G QPNV+T N+I+  +C  G+  +A +LL  M++ G  P    +N L++  C
Sbjct: 251 FLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLC 310

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G + RA ++   M  +GC  +  SY  L++G+CK K+++ A+     M+S+G  P +V
Sbjct: 311 RQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIV 370

Query: 340 TYNT 343
           TYNT
Sbjct: 371 TYNT 374



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 145/287 (50%), Gaps = 6/287 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + NI+   +     +     L   +   G  P + T+NILIN  C+ G +     +
Sbjct: 262 PNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDI 321

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++     TP+++++  L+ G C E ++  A      + + GC PD+ TY TL+  LC+
Sbjct: 322 LEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCK 381

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA+ +  ++++        C P  ITY+T+ DGL K G  ++A +L  +M+ + +
Sbjct: 382 DGKVDVAVEILNQLSSKG------CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL 435

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY+SL+ G       +EA   F ++   G++PN +T+N IM  LCK+ + D A  
Sbjct: 436 KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID 495

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            L  MI    +P  + Y  L++G    G    A +L   + S G ++
Sbjct: 496 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVK 542



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  L +NG++++  + LE M+  G  PD     +L+ GFC  G+  +A  +   +E +G 
Sbjct: 64  LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 123

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + DV +Y +LI+GYCK+ EI+ AL +   M    + P VVTYNT
Sbjct: 124 VPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNT 164


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 166/301 (55%), Gaps = 9/301 (2%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           L + G  PD+ TYN+LI  +CK G +     VL R+      PD VT+ ++++ LC   +
Sbjct: 167 LENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGK 223

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + EA  +  +     C PDV TYT LI   C       A+ L +EM          CKPD
Sbjct: 224 LKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKG------CKPD 277

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TY+ + +G+CKEG +D+A +    M      P+V+T+  ++R  C    W +A+ L  
Sbjct: 278 VVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLS 337

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           +M+ +G  P+VVTFN+++N LC+   +  A  +LE M + G  P++  YN L+ GFC   
Sbjct: 338 DMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEK 397

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +++RA E    M S GC  D+ +Y  L+   CK+ +++ A+ + +++ SKG  P ++TYN
Sbjct: 398 KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYN 457

Query: 343 T 343
           T
Sbjct: 458 T 458



 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 175/330 (53%), Gaps = 11/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L G   K+   D  L + +R++   + PD+ TYN ++   C  G++     V
Sbjct: 174 PDVITYNVLIGGYCKSGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEV 230

Query: 75  LGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L R L R C+ PD +T+T LI+  C +S + +A  L  ++R  GCKPDV TY  LING+C
Sbjct: 231 LDRQLQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 289

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+     M +    +G  CKP+ IT++ I   +C  G    A+ L   M  + 
Sbjct: 290 KEGRLDEAIKFLNNMPS----YG--CKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKG 343

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +P VVT+  LI   C       A  +  +M   G  PN +++N +++  C+  KMD A 
Sbjct: 344 CSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAI 403

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             LE+M+  G  PD   YNTL+   C  G+V+ A E+   + S GC   + +Y  +I+G 
Sbjct: 404 EYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGL 463

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K  + E A+ L  EM  KG++P ++TY+T
Sbjct: 464 TKVGKTEYAVELLEEMRRKGLKPDIITYST 493



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 162/327 (49%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL      +      + L   +   G  PD+ TYN+LIN  CK GR+      
Sbjct: 241 PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKF 300

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ +T   +++ +C+  R M+A  L + +   GC P V T+  LIN LCR
Sbjct: 301 LNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCR 360

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+++ E+M          C P++++Y+ +  G C+E  +D+A E    M     
Sbjct: 361 KRLLGRAIDVLEKMPKHG------CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGC 414

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY +L+   C     + A  +  ++  +G  P ++T+N +++ L K GK + A  
Sbjct: 415 YPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVE 474

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE M + G++PD   Y+TL+ G    G+V+ A ++F  ME         +Y  ++ G C
Sbjct: 475 LLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLC 534

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K ++   A+   + M+ KG +PT  TY
Sbjct: 535 KAQQTSRAIDFLAYMVEKGCKPTEATY 561



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 145/290 (50%), Gaps = 9/290 (3%)

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
           +  NI +    + G +  G   L R++     PD +  TSLI+G C   +  +A  +   
Sbjct: 107 FASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEI 166

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           L   G  PDV TY  LI G C++G    AL + E M+           PD +TY+TI   
Sbjct: 167 LENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMS---------VAPDVVTYNTILRS 217

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           LC  G + +A E+  +       PDV+TYT LI   C  +   +A  L  EM  +G +P+
Sbjct: 218 LCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPD 277

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           VVT+NV++N +CK G++DEA + L  M   G +P+   +N ++   C TGR   A+ L  
Sbjct: 278 VVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLS 337

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            M   GC   V ++ ILIN  C+ + +  A+ +  +M   G  P  ++YN
Sbjct: 338 DMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYN 387



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 6/305 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P V ++N+L   + K    D  +     + S G  P++ T+NI++   C  GR
Sbjct: 269 MRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGR 328

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 +L  +LR   +P  VTF  LI  LC +  +  A  +  K+   GC P+  +Y  
Sbjct: 329 WMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNP 388

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L++G C+      A+   E M +        C PD +TY+T+   LCK+G VD A E+  
Sbjct: 389 LLHGFCQEKKMDRAIEYLEIMVSRG------CYPDIVTYNTLLTALCKDGKVDAAVEILN 442

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++  +  +P ++TY ++I G         A  L  EM  +G++P+++T++ ++  L + G
Sbjct: 443 QLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREG 502

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+DEA ++   M  + ++P A  YN +M G C   + +RA +    M   GC     +Y 
Sbjct: 503 KVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYT 562

Query: 308 ILING 312
           ILI G
Sbjct: 563 ILIEG 567



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 134/264 (50%), Gaps = 6/264 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + NI+   +     +     L   +   G  P + T+NILIN  C+   +     V
Sbjct: 311 PNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDV 370

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ +    P+++++  L+ G C E ++  A      + + GC PD+ TY TL+  LC+
Sbjct: 371 LEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCK 430

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ +  ++++        C P  ITY+T+ DGL K G  + A EL  +M+ + +
Sbjct: 431 DGKVDAAVEILNQLSSKG------CSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGL 484

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY++L+RG       +EA  +F +M    ++P+ VT+N IM  LCK  +   A  
Sbjct: 485 KPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAID 544

Query: 255 LLELMIQIGVRPDASVYNTLMDGF 278
            L  M++ G +P  + Y  L++G 
Sbjct: 545 FLAYMVEKGCKPTEATYTILIEGI 568



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 3/107 (2%)

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N+ + +L +NG+++E  + LE MI  G  PD     +L+ GFC +G+  +A  +   +E+
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILEN 169

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G + DV +Y +LI GYCK+ EI+ AL +   M    + P VVTYNT
Sbjct: 170 SGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNT 213


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 177/332 (53%), Gaps = 12/332 (3%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P   P  S    F  + K K    V+ +   L   G  PD+ TYN+LI+ +CK G +   
Sbjct: 147 PDIIPCTSLIRGFCRIGKTKKATWVMEI---LEQSGAVPDVITYNVLISGYCKSGEIDNA 203

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             VL R+      PD VT+ ++++ LC   ++ +A  +  +     C PDV TYT LI  
Sbjct: 204 LQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEA 260

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+      A+ L +EM N         KPD +TY+ + +G+CKEG +D+A +    M  
Sbjct: 261 TCKESGVGQAMKLLDEMRNKGS------KPDVVTYNVLINGICKEGRLDEAIKFLNNMPS 314

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               P+V+T+  ++R  C    W +A+ L  +M+ +G  P+VVTFN+++N LC+ G +  
Sbjct: 315 YGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGR 374

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  +LE M   G  P++  YN L+ GFC   +++RA E    M S GC  D+ +Y  L+ 
Sbjct: 375 AIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLT 434

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             CK+ +++ A+ + +++ SKG  P ++TYNT
Sbjct: 435 ALCKDGKVDVAVEILNQLSSKGCSPVLITYNT 466



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 174/337 (51%), Gaps = 9/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +L    + P V ++N+L     K+   D  L +  R+N   + PD+ TYN ++   C  G
Sbjct: 174 ILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSG 230

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++     VL R L+    PD +T+T LI+  C ES + +A  L  ++R  G KPDV TY 
Sbjct: 231 KLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYN 290

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LING+C+ G    A+     M +    +G  C+P+ IT++ I   +C  G    A++L 
Sbjct: 291 VLINGICKEGRLDEAIKFLNNMPS----YG--CQPNVITHNIILRSMCSTGRWMDAEKLL 344

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M  +  +P VVT+  LI   C       A  +  +M   G  PN +++N +++  CK 
Sbjct: 345 SDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKE 404

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            KMD A   L++M+  G  PD   YNTL+   C  G+V+ A E+   + S GC   + +Y
Sbjct: 405 KKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITY 464

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +I+G  K  + E A+ L  EM  KG++P ++TY++
Sbjct: 465 NTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSS 501



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 168/327 (51%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL     K       + L   + + G  PD+ TYN+LIN  CK GR+      
Sbjct: 249 PDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF 308

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ +T   +++ +C+  R M+A  L + +   GC P V T+  LIN LCR
Sbjct: 309 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 368

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+++ E+M          C P++++Y+ +  G CKE  +D+A E    M     
Sbjct: 369 QGLLGRAIDILEKMPMHG------CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGC 422

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY +L+   C     + A  +  ++  +G  P ++T+N +++ L K GK + A +
Sbjct: 423 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 482

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G++PD   Y++L+ G    G+V+ A + F  +E  G   +  +Y  ++ G C
Sbjct: 483 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 542

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K+++ + A+   + M+SK  +PT  TY
Sbjct: 543 KSRQTDRAIDFLAYMISKRCKPTEATY 569



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R   S P V ++N+L   + K    D  +     + S G  P++ T+NI++   C  GR
Sbjct: 277 MRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 +L  +LR   +P  VTF  LI  LC +  +  A  +  K+   GC P+  +Y  
Sbjct: 337 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 396

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L++G C+      A+   + M +        C PD +TY+T+   LCK+G VD A E+  
Sbjct: 397 LLHGFCKEKKMDRAIEYLDIMVSRG------CYPDIVTYNTLLTALCKDGKVDVAVEILN 450

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++  +  +P ++TY ++I G         A  L  EM  +G++P+++T++ +++ L + G
Sbjct: 451 QLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREG 510

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+DEA +    +  +G+RP+A  YN++M G C + + +RA +    M S  C     +Y 
Sbjct: 511 KVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYT 570

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGI 334
           ILI G       + AL L +E+ S+G+
Sbjct: 571 ILIEGIAYEGLAKEALDLLNELCSRGL 597



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 149/308 (48%), Gaps = 26/308 (8%)

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
             + G +  GF  L  ++     PD +  TSLI+G C   +  +A  +   L   G  PD
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANG--------------------------NGEF 155
           V TY  LI+G C++G    AL + + M                             + + 
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 243

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
              C PD ITY+ + +  CKE  V +A +L  +M+++   PDVVTY  LI G C     +
Sbjct: 244 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA      M   G QPNV+T N+I+  +C  G+  +A +LL  M++ G  P    +N L+
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILI 363

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +  C  G + RA ++   M  +GC  +  SY  L++G+CK K+++ A+     M+S+G  
Sbjct: 364 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCY 423

Query: 336 PTVVTYNT 343
           P +VTYNT
Sbjct: 424 PDIVTYNT 431



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 145/287 (50%), Gaps = 6/287 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + NI+   +     +     L   +   G  P + T+NILIN  C+ G +     +
Sbjct: 319 PNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDI 378

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++     TP+++++  L+ G C E ++  A      + + GC PD+ TY TL+  LC+
Sbjct: 379 LEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCK 438

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA+ +  ++++        C P  ITY+T+ DGL K G  ++A +L  +M+ + +
Sbjct: 439 DGKVDVAVEILNQLSSKG------CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL 492

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY+SL+ G       +EA   F ++   G++PN +T+N IM  LCK+ + D A  
Sbjct: 493 KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID 552

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            L  MI    +P  + Y  L++G    G    A +L   + S G ++
Sbjct: 553 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVK 599



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  L +NG++++  + LE M+  G  PD     +L+ GFC  G+  +A  +   +E +G 
Sbjct: 121 LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 180

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + DV +Y +LI+GYCK+ EI+ AL +   M    + P VVTYNT
Sbjct: 181 VPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNT 221


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 189/368 (51%), Gaps = 30/368 (8%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD ML      P V ++NIL   L    H    LS+ + +   G  P++ TYN L+  F 
Sbjct: 138 FDSMLS-DGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFF 196

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           + G V     ++G +L     P+ VTF S++ G+C   ++ +A  +F ++   G  PD  
Sbjct: 197 RAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGV 256

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMAN--------------------GNGEFGVVC---- 159
           +Y TL+ G C+ G +  AL++F EM                      GN E+ V      
Sbjct: 257 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQM 316

Query: 160 -----KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
                + + +T++ + DG CK+GF+D A      M+   I P VV Y +LI G+C     
Sbjct: 317 RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRM 376

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           +EA+ L  EM  +G++P+VVT++ I++  CKN     A  L + M++ GV PDA  Y++L
Sbjct: 377 DEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSL 436

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +   C   R++ A  LF +M   G   D F+Y  LI+G+CK   +E ALSL+ +M+  G+
Sbjct: 437 IRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGV 496

Query: 335 RPTVVTYN 342
            P VVTY+
Sbjct: 497 LPDVVTYS 504



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 174/329 (52%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L+ +    +    F  + S G+ P++YTYNILI   C  G       +
Sbjct: 114 PSVLAYNAVLLALS-DASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSI 172

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P+ VT+ +L+        +  A  L   +   G KP++ T+ +++NG+C+
Sbjct: 173 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCK 232

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F+EM            PD ++Y+T+  G CK G   +A  +F +M  + I
Sbjct: 233 AGKMEDARKVFDEMMREG------LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 286

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVT+TSLI   C A +   A  L  +M ++G+Q N VTF  +++  CK G +D+A  
Sbjct: 287 MPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL 346

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            +  M Q  ++P    YN L++G+C+ GR++ A+EL   ME+ G   DV +Y  +I+ YC
Sbjct: 347 AVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 406

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           KN +   A  L  +ML KG+ P  +TY++
Sbjct: 407 KNCDTHSAFELNQQMLEKGVLPDAITYSS 435



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 172/338 (50%), Gaps = 23/338 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   + K  + +  ++L +++   GL  +  T+  LI+ FCK G +    + 
Sbjct: 288 PDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLA 347

Query: 75  LGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + R +R C   P  V + +LI G C   R+ EA  L  ++ A G KPDV TY+T+I+  C
Sbjct: 348 V-RGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 406

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +   T  A  L ++M     E GV+  PDAITYS++   LC+E  +  A  LF  M    
Sbjct: 407 KNCDTHSAFELNQQML----EKGVL--PDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLG 460

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYTSLI G C   +   A  L  +M+  GV P+VVT++V++N L K+ +  EA 
Sbjct: 461 LQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQ 520

Query: 254 RLLELMIQIGVRPDASVYNTLMD---------------GFCLTGRVNRAKELFVSMESNG 298
           +LL  +      P  + Y+ LM                GFC+ G +N A +++ SM    
Sbjct: 521 QLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRN 580

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
              D   Y +LI+G+C+   +  ALS + +ML +G  P
Sbjct: 581 WNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAP 618



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 161/338 (47%), Gaps = 21/338 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L          D    L   + + GL PD+ TY+ +I+ +CK       F +
Sbjct: 358 PSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFEL 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L     PDA+T++SLI+ LC E R+ +A  LF  +   G +PD FTYT+LI+G C+
Sbjct: 418 NQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCK 477

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL+L ++M       GV+  PD +TYS + +GL K     +A++L  K+  E  
Sbjct: 478 EGNVERALSLHDKMVKA----GVL--PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEP 531

Query: 195 NPDVVTYTSL---------------IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            P    Y +L               ++GFC     NEA  ++  M+D+    +   ++V+
Sbjct: 532 IPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVL 591

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+ G + +A    + M+Q G  P+++   +L+ G    G V  A ++   + +   
Sbjct: 592 IHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCS 651

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           + D  +   LI+       ++  L +   M   G+ P+
Sbjct: 652 LADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPS 689


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 178/340 (52%), Gaps = 10/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D MLR     P V ++ +L   + KN  ++  +++   + + G  P++ TYN++IN  
Sbjct: 164 LLDDMLR-RGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGM 222

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GRV     +L R+      PD V++T+L+KGLCA  R  +   LF ++    C P+ 
Sbjct: 223 CREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNE 282

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  LI   CR G    A+ + ++M          C  +    + + + +CK+G VD A
Sbjct: 283 VTFDMLIRFFCRGGMVERAIQVLQQMTEHE------CATNTTLCNIVINSICKQGRVDDA 336

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +    M     NPD ++YT++++G C A  WN+AK L  EM+     PN VTFN  +  
Sbjct: 337 FKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICI 396

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+ G +++A  L+E M + G       YN L++GFC+ G ++ A ELF SM    C  +
Sbjct: 397 LCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPN 453

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  L+ G C  + ++ A  L +EML +   P VVT+N
Sbjct: 454 TITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFN 493



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 165/331 (49%), Gaps = 9/331 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SP  V ++N L     +  H D    L   + S+ + PD YTY  LI   C  GRV+   
Sbjct: 106 SPVDVFAYNTLVAGYCRYGHLDAARRL---IGSMPVAPDAYTYTPLIRVLCDRGRVADAL 162

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  +LR    P+ VT+T L++ +C  S   +A A+  ++RA GC P++ TY  +ING+
Sbjct: 163 SLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGM 222

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           CR G    A +L   +      F   C+PD ++Y+T+  GLC     D  +ELF +M ++
Sbjct: 223 CREGRVDDARDLLNRL------FSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEK 276

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N  P+ VT+  LIR FC       A  +  +M +     N    N+++N +CK G++D+A
Sbjct: 277 NCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDA 336

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            + L  M   G  PD   Y T++ G C   R N AKEL   M  N C  +  ++   I  
Sbjct: 337 FKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICI 396

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            C+   IE A+ L  +M   G    VVTYN 
Sbjct: 397 LCQKGLIEQAIMLIEQMQEHGCTVGVVTYNA 427



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 166/340 (48%), Gaps = 10/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+  +  P  V +F++L     +    +  + + +++       +    NI+IN  
Sbjct: 269 LFAEMMEKNCMPNEV-TFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSI 327

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GRV   F  L  +      PD +++T+++KGLC   R  +A  L  ++    C P+ 
Sbjct: 328 CKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNE 387

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+ T I  LC+ G    A+ L E+M       GVV      TY+ + +G C +G +D A
Sbjct: 388 VTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVV------TYNALVNGFCVQGHIDSA 441

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ELF  M      P+ +TYT+L+ G C A   + A  L  EM+ +   PNVVTFNV++N 
Sbjct: 442 LELFRSMP---CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNF 498

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ G +DEA  L+E M++ G  P+   YNTL DG         A EL   + S G   D
Sbjct: 499 FCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPD 558

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           V ++  +I    K   +E A+ ++      G+RP  + YN
Sbjct: 559 VITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYN 598



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 164/329 (49%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  L   L  +K +D V  LF  +      P+  T+++LI  FC+ G V     V
Sbjct: 245 PDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQV 304

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++       +      +I  +C + R+ +A      + ++GC PD  +YTT++ GLCR
Sbjct: 305 LQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCR 364

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L +EM   N      C P+ +T++T    LC++G +++A  L  +M++   
Sbjct: 365 AERWNDAKELLKEMVRNN------CPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGC 418

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              VVTY +L+ GFC     + A  LF  M     +PN +T+  ++  LC   ++D A+ 
Sbjct: 419 TVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAAE 475

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  M+     P+   +N L++ FC  G ++ A EL   M  +GC  ++ +Y  L +G  
Sbjct: 476 LVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGIT 535

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+   E AL L   ++SKG+ P V+T+++
Sbjct: 536 KDCSSEDALELLHGLVSKGVSPDVITFSS 564



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 154/321 (47%), Gaps = 9/321 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           NI+   + K    D        + S G  PD  +Y  ++   C+  R +    +L  ++R
Sbjct: 321 NIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVR 380

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
           +   P+ VTF + I  LC +  I +A  L  +++  GC   V TY  L+NG C  GH   
Sbjct: 381 NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDS 440

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL LF  M          CKP+ ITY+T+  GLC    +D A EL  +M   +  P+VVT
Sbjct: 441 ALELFRSMP---------CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVT 491

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           +  L+  FC     +EA  L  +MM+ G  PN++T+N + + + K+   ++A  LL  ++
Sbjct: 492 FNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLV 551

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             GV PD   +++++       RV  A ++F   +  G       Y  ++ G CK  EI+
Sbjct: 552 SKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEID 611

Query: 321 GALSLYSEMLSKGIRPTVVTY 341
            A+   + M+S G  P   TY
Sbjct: 612 NAIDFLAYMVSNGCMPNESTY 632



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 122/250 (48%), Gaps = 9/250 (3%)

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R    PD    T LI+ LC   R  +AA +       G   DVF Y TL+ G CR GH  
Sbjct: 68  RDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLD 127

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L   M            PDA TY+ +   LC  G V  A  L   M      P+VV
Sbjct: 128 AARRLIGSMP---------VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVV 178

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TYT L+   C  + + +A  +  EM  +G  PN+VT+NVI+N +C+ G++D+A  LL  +
Sbjct: 179 TYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRL 238

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              G +PD   Y TL+ G C + R +  +ELF  M    CM +  ++ +LI  +C+   +
Sbjct: 239 FSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMV 298

Query: 320 EGALSLYSEM 329
           E A+ +  +M
Sbjct: 299 ERAIQVLQQM 308



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 3/170 (1%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           + +E     A+ + L    +   PDV   T LIR  C     ++A  +       G   +
Sbjct: 50  IAREDLAGAARLVELSASRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVD 109

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V  +N ++   C+ G +D A RL+  M    V PDA  Y  L+   C  GRV  A  L  
Sbjct: 110 VFAYNTLVAGYCRYGHLDAARRLIGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLD 166

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            M   GC  +V +Y +L+   CKN   E A+++  EM +KG  P +VTYN
Sbjct: 167 DMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYN 216



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +FN+L     +    D  + L +++   G  P+L TYN L +   K         
Sbjct: 486 PPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALE 545

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  ++    +PD +TF+S+I  L  E R+ EA  +F   +  G +P    Y  ++ GLC
Sbjct: 546 LLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLC 605

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           +      A++    M + NG     C P+  TY  + +GL +EG + +A++L 
Sbjct: 606 KRHEIDNAIDFLAYMVS-NG-----CMPNESTYIILIEGLAREGLLKEAQDLL 652


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 187/360 (51%), Gaps = 32/360 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF-- 72
           P + +FNI    L K    +    + + + + G  P++ TYN LI+  CK G     +  
Sbjct: 198 PNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRA 257

Query: 73  -VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +L  +L +   P+ +TF +LI G C +  ++ A   F +++  G KP++ TY +LING
Sbjct: 258 DAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLING 317

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVV---------CK--------------------PD 162
           L   G    A+ L+++M     +  +V         CK                    P+
Sbjct: 318 LSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPN 377

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
           AIT++T+ D  CK G +++   L   M DE I P+V TY  LI G C   +   AK L  
Sbjct: 378 AITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLN 437

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM +  ++ +VVT+N+++   CK+G+  +A +LL  M+ +GV+P+   YNTLMDG+C+ G
Sbjct: 438 EMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEG 497

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  A ++   ME  G   +V +Y +LI G+CK  ++E A  L +EML KG+ P   TY+
Sbjct: 498 NLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYD 557



 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 178/328 (54%), Gaps = 9/328 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S N L   L K      +  ++K +    + P+L T+NI IN  CK G+++    V+  I
Sbjct: 167 SCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDI 226

Query: 79  LRSCFTPDAVTFTSLIKGLCAES---RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
               F+P+ VT+ +LI G C +    ++  A A+  ++ A    P+  T+ TLI+G C+ 
Sbjct: 227 KAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKD 286

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
            + + A N FEEM           KP+ +TY+++ +GL   G +D+A  L+ KM    + 
Sbjct: 287 ENVLAAKNAFEEMQRQG------LKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLK 340

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P++VT+ +LI GFC      EA+ LF ++ +Q + PN +TFN +++  CK G M+E   L
Sbjct: 341 PNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFAL 400

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M+  G+ P+ S YN L+ G C    V  AK+L   ME+     DV +Y ILI G+CK
Sbjct: 401 HNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCK 460

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + E   A  L  EML+ G++P  VTYNT
Sbjct: 461 DGEPSKAEKLLGEMLNVGVKPNHVTYNT 488



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +  A E+F +++D      + +   L+      N+  E + ++ EM+ + +QPN+ TFN+
Sbjct: 146 IHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNI 205

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL---TGRVNRAKELFVSME 295
            +N LCK GK+++A  ++E +   G  P+   YNTL+DG C     G++ RA  +   M 
Sbjct: 206 FINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEML 265

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +N    +  ++  LI+G+CK++ +  A + + EM  +G++P +VTYN+
Sbjct: 266 ANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNS 313


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 180/351 (51%), Gaps = 18/351 (5%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +F  +L    +P  V   +++ G C+A +  +D    LF  +N  G  P   TYN++I+ 
Sbjct: 345 LFQKLLHSGVTPSTVAYTSLIHGLCMANS--FDDARELFADMNRRGCPPSPVTYNVMIDA 402

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +     ++ +++     PD VT+ +++ GLC  SR+ EA  LF ++   GC P+
Sbjct: 403 SCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPN 462

Query: 122 VFTYTTLINGLCRT---------GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
             ++ T+I GLC+          G    A  L + M + +G       PD +TYST+  G
Sbjct: 463 RRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTD-DGHV-----PDVVTYSTLISG 516

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           LC    VD A+ L   M      P VVT  +LI G C A    EA+ +   M+  G  P+
Sbjct: 517 LCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD 576

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           VVT+N +++  C+ G+ + A  LL  M+  G+ P+   Y  L+ G C   R+  A  +F 
Sbjct: 577 VVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFA 636

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M+S+GC  ++F+Y  LI G+C   +++G L L+ EM+  GI P  V Y T
Sbjct: 637 QMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGT 687



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 182/333 (54%), Gaps = 15/333 (4%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +NI+   L +N   D  + +F+++N   + PD ++Y ILI+   K G+++    +  ++L
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            S  TP  V +TSLI GLC  +   +A  LF  +   GC P   TY  +I+  C+ G   
Sbjct: 351 HSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLE 410

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A +L ++M     E G V  PD +TY+T+ DGLCK   V++A  LF +M+     P+  
Sbjct: 411 EACDLIKKMI----EDGHV--PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRR 464

Query: 200 TYTSLIRGFCYAN---------DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           ++ ++I G C  +           +EA  L   M D G  P+VVT++ +++ LC   ++D
Sbjct: 465 SHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 524

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           +A  LLE M++   +P     NTL+ G C  GR+  A+E+  +M S+G   DV +Y  L+
Sbjct: 525 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 584

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G+C+  + E A  L S+M+++G+ P VVTY  
Sbjct: 585 HGHCRAGQTERARELLSDMVARGLAPNVVTYTA 617



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 159/324 (49%), Gaps = 15/324 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++N++     K    +    L K++   G  PD+ TYN +++  CK  RV    +
Sbjct: 390 PPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALL 449

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIM---------EAAALFTKLRAFGCKPDVFT 124
           +   + R   TP+  +  ++I GLC +S+I          EA  L  ++   G  PDV T
Sbjct: 450 LFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVT 509

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y+TLI+GLC       A +L E+M          CKP  +T +T+  GLCK G + +A+E
Sbjct: 510 YSTLISGLCSIARVDDARHLLEDMVKRQ------CKPTVVTQNTLIHGLCKAGRIKEARE 563

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +   M     +PDVVTY +L+ G C A     A+ L  +M+ +G+ PNVVT+  +++ LC
Sbjct: 564 VLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC 623

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K  ++ EA  +   M   G  P+   Y  L+ GFC  G+V+   +LF  M   G   D  
Sbjct: 624 KANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV 683

Query: 305 SYGILINGYCKNKEIEGALSLYSE 328
            YG L    CK+     AL +  E
Sbjct: 684 VYGTLAAELCKSGRSARALEILRE 707



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 159/309 (51%), Gaps = 21/309 (6%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P L T N+L+  FC  G+V     +L  +      PD V++ +++ GLC   R+ EA  L
Sbjct: 210 PCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRL 269

Query: 110 F------TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
           F      +   +    P +  Y  +I GLC+      A+ +FE+M   N        PD+
Sbjct: 270 FGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERN------VSPDS 323

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
            +Y  + DGL K G ++ A+ LF K+    + P  V YTSLI G C AN +++A+ LF +
Sbjct: 324 WSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFAD 383

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M  +G  P+ VT+NV+++  CK G ++EA  L++ MI+ G  PD   YNT+MDG C + R
Sbjct: 384 MNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSR 443

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG---------ALSLYSEMLSKGI 334
           V  A  LF  ME  GC  +  S+  +I G C+  +I+          A  L   M   G 
Sbjct: 444 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGH 503

Query: 335 RPTVVTYNT 343
            P VVTY+T
Sbjct: 504 VPDVVTYST 512



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 149/335 (44%), Gaps = 53/335 (15%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNK--------HYDTVLSLFKRLNSIGLFPDLYT 54
           +F+ M R+  +P       I+ G   ++K          D    L KR+   G  PD+ T
Sbjct: 450 LFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVT 509

Query: 55  YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR 114
           Y+ LI+  C + RV     +L  +++    P  VT  +LI GLC   RI EA  +   + 
Sbjct: 510 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMV 569

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGL 173
           + G  PDV TY TL++G CR G T  A  L  +M A G         P+ +TY+ +  GL
Sbjct: 570 SSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG-------LAPNVVTYTALVSGL 622

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK   + +A  +F +MK     P++ TYT+LI GFC A   +    LF EM+  G+ P+ 
Sbjct: 623 CKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDH 682

Query: 234 VTFNVIMNELCKNGKM--------------------DEASR-----LLEL---------- 258
           V +  +  ELCK+G+                     DE  R     LLE           
Sbjct: 683 VVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFV 742

Query: 259 --MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
             M++ G  P      +L+ G C +G+   A+ + 
Sbjct: 743 RDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVL 777



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 166/408 (40%), Gaps = 73/408 (17%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF  M   H   P V  +N+L   L+K +  + V  + + +   G FPD +T+  ++   
Sbjct: 32  IFSLMEECHSPYPDV--YNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGL 89

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G++    +V+  +      P   T + L   LC    +  A  L   +       + 
Sbjct: 90  CKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPV----ANS 145

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMAN-----GNGEFGVVC------------------ 159
             Y  ++  LC+      AL L   M+        G    V                   
Sbjct: 146 SAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRE 205

Query: 160 ---KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA----- 211
              +P  +T + + +G C  G VDKA+EL   M DE   PD V+Y +++ G C A     
Sbjct: 206 NRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEE 265

Query: 212 -----------------------------------NDW-NEAKCLFIEMMDQGVQPNVVT 235
                                              ND  +EA  +F +M ++ V P+  +
Sbjct: 266 AVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWS 325

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           + ++++ L K GK+++A  L + ++  GV P    Y +L+ G C+    + A+ELF  M 
Sbjct: 326 YGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN 385

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             GC     +Y ++I+  CK   +E A  L  +M+  G  P VVTYNT
Sbjct: 386 RRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 433



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 118/256 (46%), Gaps = 18/256 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N L   L K         +   + S G  PD+ TYN L++  C+ G+      +
Sbjct: 540 PTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAREL 599

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+ VT+T+L+ GLC  +R+ EA  +F ++++ GC P++FTYT LI G C 
Sbjct: 600 LSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCS 659

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC---KPDAITYSTITDGLCKEGFVDKAKELFLK--- 188
            G     L LF EM         VC    PD + Y T+   LCK G   +A E+  +   
Sbjct: 660 AGQVDGGLKLFGEM---------VCAGISPDHVVYGTLAAELCKSGRSARALEILREGRE 710

Query: 189 -MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            ++ E    +V  Y   + G   A     A     +M+  G  P       ++  LCK+G
Sbjct: 711 SLRSEAWGDEV--YRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSG 768

Query: 248 KMDEASRLLELMIQIG 263
           +  EA  +LE ++ + 
Sbjct: 769 QGGEARAVLEEIMDLA 784



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 132/323 (40%), Gaps = 68/323 (21%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRA----------------------------- 115
           P  + FTS+I+G C   R  EA  +F+ +                               
Sbjct: 8   PAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMV 67

Query: 116 -----FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN-------------------- 150
                 GC PD FT+TT++ GLC+ G    A  + +EM +                    
Sbjct: 68  QVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLR 127

Query: 151 GNGE-----FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
           G+ E       ++   ++  Y+ +   LCK   VD A EL   M ++ I     +  S++
Sbjct: 128 GSMERAFQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVL 187

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            G   +   +EA  ++ E      +P +VT NV++   C  G++D+A  LL  M      
Sbjct: 188 VGLMDSGRIDEALQVYRE---NRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECA 244

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSME------SNGCMRDVFSYGILINGYCKNKEI 319
           PD   Y T++DG C  GRV  A  LF   E      S+     +  Y I+I G C+N  I
Sbjct: 245 PDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRI 304

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
           + A+ ++ +M  + + P   +Y 
Sbjct: 305 DEAVQMFEKMNERNVSPDSWSYG 327



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 14/226 (6%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G  P    +T++I G C  G T  A+ +F  M   +  +     PD   Y+ + D L K 
Sbjct: 5   GIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPY-----PD--VYNVLIDSLSKR 57

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
              +  K++   M D    PD  T+T+++ G C A   +EA+ +  EM  + + P   T 
Sbjct: 58  QETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATS 117

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           + + +ELC  G M+ A +LLE+M       ++S YN ++   C   RV+ A EL  +M  
Sbjct: 118 SFLAHELCLRGSMERAFQLLEIMPV----ANSSAYNIVVVALCKAARVDDALELARTMSE 173

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                   S   ++ G   +  I+ AL +Y E   +   P +VT N
Sbjct: 174 KRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRRE---PCLVTLN 216



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 32/177 (18%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M  + I P  + +TS+I+G+C      EA  +F  +M++   P    +NV+++ L K  +
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIF-SLMEECHSPYPDVYNVLIDSLSKRQE 59

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES------------ 296
            +   +++++M+  G  PD+  + T++ G C  G+++ A+ +   M S            
Sbjct: 60  TEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSF 119

Query: 297 -------NGCMRDVF------------SYGILINGYCKNKEIEGALSLYSEMLSKGI 334
                   G M   F            +Y I++   CK   ++ AL L   M  K I
Sbjct: 120 LAHELCLRGSMERAFQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRI 176



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-NGCMRDVFSYGILINGYCKNK 317
           M Q G+ P   ++ +++ G+C  GR   A ++F  ME  +    DV  Y +LI+   K +
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDV--YNVLIDSLSKRQ 58

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
           E E    +   M+ +G  P   T+ T
Sbjct: 59  ETEAVKKMVQVMVDRGCFPDSFTFTT 84


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 164/304 (53%), Gaps = 6/304 (1%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F  +   GL  D  TY  LIN  C+ G +     VL  +L      D VT+T L+ G C 
Sbjct: 387 FDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCK 446

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             ++ EA  +   +   G  P+V TYT L +GLC+ G    A  L  EM+N   E     
Sbjct: 447 RGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLEL---- 502

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
             +A TY+++ +GLCK G++D+A      M    + PDV TYT+LI   C + + + A  
Sbjct: 503 --NACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHD 560

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  EM+D G++P +VT+NV+MN  C +G+++   +LLE M++  + P+A+ YN+LM  +C
Sbjct: 561 LLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYC 620

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
           +   +    E++  M S     +  +Y ILI G+CK + ++ A   ++EM+ KG R T  
Sbjct: 621 IGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTAS 680

Query: 340 TYNT 343
           +Y+ 
Sbjct: 681 SYSA 684



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 171/341 (50%), Gaps = 10/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M     SPP V ++ IL          +  + L   + + G+ P+   Y  ++   
Sbjct: 284 LFDEM----ASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALL 339

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GRVS    V+  ++      D   +T+++ G C +  ++ A   F +++  G   D 
Sbjct: 340 CDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDG 399

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYTTLINGLCR G    A  + +EM             D +TY+ + DG CK G + +A
Sbjct: 400 VTYTTLINGLCRAGELKEAEKVLQEM------LARRLDVDEVTYTVLVDGYCKRGKMAEA 453

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++   M    + P+VVTYT+L  G C   D   A  L  EM ++G++ N  T+N ++N 
Sbjct: 454 FQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLING 513

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +D+A R +  M   G++PD   Y TL+D  C +G ++RA +L   M  NG    
Sbjct: 514 LCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPT 573

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y +L+NG+C +  +EG   L   ML K I P   TYN+
Sbjct: 574 IVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNS 614



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 141/292 (48%), Gaps = 6/292 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D  TY +L++ +CK G+++  F V   +++    P+ VT+T+L  GLC +  +  A  L 
Sbjct: 433 DEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELL 492

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++   G + +  TY +LINGLC+ G+   A+    +M           KPD  TY+T+ 
Sbjct: 493 HEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAG------LKPDVYTYTTLI 546

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           D LCK G +D+A +L  +M D  I P +VTY  L+ GFC +      K L   M+++ + 
Sbjct: 547 DALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIH 606

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN  T+N +M + C    M   + + + M    V P+ + YN L+ G C    +  A+  
Sbjct: 607 PNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYF 666

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              M   G      SY  LI    K K+   A  L+ +M  +G       YN
Sbjct: 667 HNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYN 718



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 122/265 (46%), Gaps = 41/265 (15%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ P++ TY  L +  CK G V     +L  +       +A T+ SLI GLC    + +A
Sbjct: 464 GVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQA 523

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
                 + A G KPDV+TYTTLI+ LC++G    A +L +EM + NG      KP  +TY
Sbjct: 524 MRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLD-NG-----IKPTIVTY 577

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL---------------------- 204
           + + +G C  G V+  K+L   M ++NI+P+  TY SL                      
Sbjct: 578 NVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCS 637

Query: 205 -------------IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
                        I+G C A    EA+    EM+++G +    +++ ++  L K  K  E
Sbjct: 638 RNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVE 697

Query: 252 ASRLLELMIQIGVRPDASVYNTLMD 276
           A +L   M + G   +  VYN  +D
Sbjct: 698 ARKLFHDMRKEGFTAEPDVYNFYID 722



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 153/341 (44%), Gaps = 53/341 (15%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
           +HY   +S +K  +S     D  ++++L+ C        P   +L R+ +   +P     
Sbjct: 194 EHY---ISTYKAFSS-----DPASFDLLLLCL-------PSAPLLRRVRQYGISPSPEAC 238

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPD--VFTYTTLINGLCRTGHTIVALNLFEEM 148
            +++  L  +    EA  LF  L      PD  V +Y  L+  LC  G    A  LF+EM
Sbjct: 239 NAVLSRLPLD----EAIELFQGL------PDKNVCSYNILLKVLCGAGRVEDARQLFDEM 288

Query: 149 AN---------------GNGEFGVVCK-----------PDAITYSTITDGLCKEGFVDKA 182
           A+                 GE     K           P+A  Y+++   LC +G V  A
Sbjct: 289 ASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDA 348

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +   M    +  D   YT+++ GFC   D   A+  F EM  +G+  + VT+  ++N 
Sbjct: 349 LTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLING 408

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+ G++ EA ++L+ M+   +  D   Y  L+DG+C  G++  A ++  +M   G   +
Sbjct: 409 LCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPN 468

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +Y  L +G CK  +++ A  L  EM +KG+     TYN+
Sbjct: 469 VVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNS 509



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 8/227 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
            C++N L   L K  + D  +     +++ GL PD+YTY  LI+  CK G +     +L 
Sbjct: 504 ACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQ 563

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L +   P  VT+  L+ G C   R+     L   +      P+  TY +L+   C   
Sbjct: 564 EMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGN 623

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +      +++ M + N E      P+  TY+ +  G CK   + +A+    +M ++    
Sbjct: 624 NMKSTTEIYKGMCSRNVE------PNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRL 677

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG--VQPNVVTFNVIMN 241
              +Y++LIR       + EA+ LF +M  +G   +P+V  F +  N
Sbjct: 678 TASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFN 724



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 10/228 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K+   D    L + +   G+ P + TYN+L+N FC  GRV  G  +
Sbjct: 537 PDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKL 596

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     P+A T+ SL+K  C  + +     ++  + +   +P+  TY  LI G C+
Sbjct: 597 LEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCK 656

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A     EM     E G   +  A +YS +   L K+    +A++LF  M+ E  
Sbjct: 657 ARSMKEAQYFHNEMI----EKGF--RLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGF 710

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +   Y   I  F +  D  EA    + + D+ V+ ++V     M++
Sbjct: 711 TAEPDVYNFYI-DFNFNEDNLEAT---LALCDELVEASIVKSKAEMDQ 754


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/418 (30%), Positives = 205/418 (49%), Gaps = 78/418 (18%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTV-------LSLFKRLNSIG---LFPDL 52
           +FD +L+    P  + + N L   +A+     +V       +S+F R+   G   + PD+
Sbjct: 86  LFDELLQ-RARPGSIYALNQLLTTVARAPVSSSVRDGPALAVSMFNRMARAGAKKVAPDI 144

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FT 111
            T+ ILI+C C  G ++ GF  LG+I+++     AVTFT L++ LCAE R  +A  +   
Sbjct: 145 ATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMNIVLR 204

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG-------------------- 151
           ++   GC PDVF+YTTL+ GLC       A  L   MA                      
Sbjct: 205 RMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFK 264

Query: 152 NGEFG----VVCK-------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
            G+ G    + CK       P+ +T +++ DGLCK   +DKA+ +  +M DE+I P+  T
Sbjct: 265 EGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTT 324

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y SLI G+  +  W EA  +  EM   G +PNVVT++++++ LCK+G   EA  +   MI
Sbjct: 325 YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMI 384

Query: 261 QIGVRPDASVYNTLMDG-----------------------------------FCLTGRVN 285
           Q G +P+AS Y +L+ G                                   +C  GR++
Sbjct: 385 QSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLD 444

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A   F  M+  G M D+ +Y  +I+G CK   ++ A+S + +M+  G+ P ++T+NT
Sbjct: 445 EASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNT 502



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 185/381 (48%), Gaps = 50/381 (13%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H  PP V + N +   L K +  D   ++ +++    + P+  TYN LI+ +   G+ + 
Sbjct: 281 HGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTE 340

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L  + R    P+ VT++ LI  LC      EA  +F  +   G KP+  TY +L++
Sbjct: 341 AVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLH 400

Query: 131 GLCRTGHTIVALNLFEEMANGNG----------EFGVVCK-------------------- 160
           G    G+ +V +N  +++   NG          E    CK                    
Sbjct: 401 GYATEGN-LVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFM 459

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           PD + Y+T+ DGLCK G +D A   F +M D+ ++PD++T+ +LI GF     W +A+ L
Sbjct: 460 PDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEEL 519

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           F EMMD+G+ PNV TFN ++++L K GK+ EA +L +LM + G +P+   YNT++ G+ +
Sbjct: 520 FYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFI 579

Query: 281 TGRVNRAKELFVS-------------------MESNGCMRDVFSYGILINGYCKNKEIEG 321
            G V    +L                      M S G   DV +   LI+  C++  IE 
Sbjct: 580 AGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIED 639

Query: 322 ALSLYSEMLSKGIRPTVVTYN 342
            L+L+ EML K  +   +T N
Sbjct: 640 ILTLFREMLGKADKTDTITEN 660


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 178/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +     K +       L + +   GL P+L +YN++IN  C+ G++     +
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +  + PD VTF +LI G C      +A  L  ++   G  P+V TYTTLIN +C+
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCK 355

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+   ++M +          P+  TY+T+ DG  ++GF+ +A ++  +M +   
Sbjct: 356 AGNLNRAMEFLDQMRDRG------LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P ++TY +LI G C      +A  L  EM+++G  P+VV+++ I++  C+N ++++A +
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ 469

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+  G+ PD + Y++L+ G C   R+    +LF  M S G   D  +Y  LIN YC
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              +++ AL L+ EM+ KG  P +VTYN
Sbjct: 530 IEGDLDKALRLHDEMIQKGFSPDIVTYN 557



 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 182/359 (50%), Gaps = 30/359 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLS-LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V S+N +   + + K    +   +FK +   G+ P++YTYNILI  FC  G +  G  
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLX 224

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
             G + R+   P+ VT+ ++I   C   +I EA  L   +   G  P++ +Y  +INGLC
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLC 284

Query: 134 RTGHTIVALNLFEEMAN--------------------GNGEFGVVCK---------PDAI 164
           R G       + EEM+                     GN    +V           P+ +
Sbjct: 285 REGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVV 344

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY+T+ + +CK G +++A E   +M+D  ++P+  TYT+LI GF       +A  +  EM
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           ++ G  P ++T+N ++N  C  G+M++AS LL+ MI+ G  PD   Y+T++ GFC    +
Sbjct: 405 VENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQEL 464

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +A +L V M + G   DV +Y  LI G CK + +     L+ EMLS G+ P  VTY +
Sbjct: 465 EKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTS 523



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 173/342 (50%), Gaps = 23/342 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   + K  + +  +    ++   GL P+  TY  LI+ F + G +   + +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++ + FTP  +T+ +LI G C   R+ +A+ L  ++   G  PDV +Y+T+I+G CR
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                 A  L  EM A G         PD  TYS++  GLCK+  + +  +LF +M    
Sbjct: 461 NQELEKAFQLKVEMVAKG-------ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTYTSLI  +C   D ++A  L  EM+ +G  P++VT+NV++N   K  +  EA 
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 254 RLLELMIQIGVRPDASVYNTLMD---------------GFCLTGRVNRAKELFVSMESNG 298
           RLL  ++     P+   YNTL+D               GFC+ G +N A  +  SM   G
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
              +   Y ++I+G+ K   IE A +LY EML  G  P  VT
Sbjct: 634 YKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVT 675



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 172/329 (52%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N++   L +         + + ++     PD  T+N LIN +C +G      V+
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVL 330

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++++  +P+ VT+T+LI  +C    +  A     ++R  G  P+  TYTTLI+G  +
Sbjct: 331 HAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQ 390

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + +EM   NG       P  ITY+ + +G C  G ++ A  L  +M +   
Sbjct: 391 QGFLKQAYQIMKEMVE-NG-----FTPTIITYNALINGHCILGRMEDASGLLQEMIERGF 444

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV+Y+++I GFC   +  +A  L +EM+ +G+ P+V T++ ++  LCK  ++ E   
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD 504

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+ +G+ PD   Y +L++ +C+ G +++A  L   M   G   D+ +Y +LING+ 
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFN 564

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K    + A  L  ++L +   P  +TYNT
Sbjct: 565 KQSRTKEAKRLLLKLLYEESVPNEITYNT 593



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 171/360 (47%), Gaps = 42/360 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR-VSPGFVVLGRI 78
           F+++    A+    +  LS+     S G  P + +YN +++   +  + V     +   +
Sbjct: 135 FDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEM 194

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           + S  +P+  T+  LI+G C    +      F ++   GC P+V TY T+I+  C+    
Sbjct: 195 VESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKI 254

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  L   MA           P+ I+Y+ + +GLC+EG + +  E+  +M      PD 
Sbjct: 255 GEAFKLLRLMALKG------LNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDR 308

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VT+ +LI G+C   ++++A  L  EM+  G+ PNVVT+  ++N +CK G ++ A   L+ 
Sbjct: 309 VTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQ 368

Query: 259 MIQIGVRPDASVYNTLMDGF-----------------------------------CLTGR 283
           M   G+ P+   Y TL+DGF                                   C+ GR
Sbjct: 369 MRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGR 428

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  A  L   M   G + DV SY  +I+G+C+N+E+E A  L  EM++KGI P V TY++
Sbjct: 429 MEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSS 488



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 120/291 (41%), Gaps = 44/291 (15%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L          +    L + +   G  PD+ +Y+ +I+ FC+   +   F +
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQL 470

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++    +PD  T++SLI+GLC + R+ E   LF ++ + G  PD  TYT+LIN  C 
Sbjct: 471 KVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCI 530

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCK-----------------------------PDAIT 165
            G    AL L +EM        +V                               P+ IT
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT 590

Query: 166 YSTITD---------------GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
           Y+T+ D               G C +G +++A  +   M  +    +   Y  +I G   
Sbjct: 591 YNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSK 650

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
             +  +A  L+ EM+  G  P+ VT   +   L   GK  E ++LL+  ++
Sbjct: 651 VGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLK 701



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 21/179 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++  L          D  L L   +   G  PD+ TYN+LIN F K  R      
Sbjct: 515 PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKR 574

Query: 74  VLGRILRSCFTPDAVTFTSLI---------------KGLCAESRIMEAAALFTKLRAFGC 118
           +L ++L     P+ +T+ +LI               KG C +  + EA  +   +   G 
Sbjct: 575 LLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGY 634

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           K +   Y  +I+G  + G+   A NL++EM +          P ++T   +   L  EG
Sbjct: 635 KLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG------FAPHSVTIMALAKSLYHEG 687


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 190/357 (53%), Gaps = 28/357 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  FN+L   L K+ + D  + LF+ + S  + P++ TYN +I+  CK G +     +
Sbjct: 95  PDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKAREL 154

Query: 75  LGRILRSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           L  ++R      PD VT+ +LI      SRI EA A   K++A G  PDV T   L++G+
Sbjct: 155 LEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGI 214

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVV--------------------------CKPDAITY 166
           C+ G    AL + + M        V+                          C PD +T+
Sbjct: 215 CKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTF 274

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+ DG CK G + +A E+  +M  ENI PDV+TYT L+ G C       A  L  E++ 
Sbjct: 275 NTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVR 334

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           QG  P+V+ +  +++ LCK+G+++EA +L++ M   G R    +Y++L+ G+C  G V++
Sbjct: 335 QGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHK 394

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A+E+   M S   +  +F+Y I++ G  K+  I  A+SL S+++++G  P VVTYNT
Sbjct: 395 AREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNT 451



 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 176/342 (51%), Gaps = 9/342 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C F   ++     P V + NIL   + K+   +  L +   +   G  PD+ TYN +I+ 
Sbjct: 189 CAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHA 248

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C  G+V     +L  +  SC +PD VTF +L+ G C    +  A  +  ++      PD
Sbjct: 249 LCVAGKVVEAAEILKTM--SC-SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPD 305

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V TYT L+NGLCR G   VA  L EE+       G +  PD I Y+++ DGLCK G +++
Sbjct: 306 VITYTILVNGLCRVGQVQVAFYLLEEIVRQ----GYI--PDVIAYTSLVDGLCKSGEIEE 359

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A +L  +M        VV Y+SL+ G+C A + ++A+ +  EM+   + P + T+N+++ 
Sbjct: 360 AHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLG 419

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            L K+G + +A  L+  ++  G  PD   YNTL+DG C   RV  A +L   M S GC  
Sbjct: 420 GLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFP 479

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  + G ++ G C+   ++ A SL  EM  K   P VV Y +
Sbjct: 480 NDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTS 521



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 169/337 (50%), Gaps = 6/337 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +L+     P + +FN L     K       L + + +    + PD+ TY IL+N  C++G
Sbjct: 261 ILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVG 320

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +V   F +L  I+R  + PD + +TSL+ GLC    I EA  L  ++   GC+  V  Y+
Sbjct: 321 QVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYS 380

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           +L++G CR G+   A  +  EM + N        P   TY+ +  GL K+G + KA  L 
Sbjct: 381 SLVSGYCRAGNVHKAREILAEMVSIN------MVPPLFTYNIVLGGLIKDGSISKAVSLI 434

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             +      PDVVTY +LI G C AN   EA  L  EM  +G  PN VT   ++  LC+ 
Sbjct: 435 SDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRV 494

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G++D+A  L+  M +    P+  VY +L+DG C + R++ A  +  +M   G   D F+Y
Sbjct: 495 GRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAY 554

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI        +  A+++Y EM+++G  P   T  T
Sbjct: 555 RKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKT 591



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 170/340 (50%), Gaps = 7/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD+          V S+N L   L K+ H+     ++K L   G  P+L T+ ILI   C
Sbjct: 14  FDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNC 73

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G+       L  +      PD   F  LI GL  +    +A  LF  + +   KP++ 
Sbjct: 74  KAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIV 133

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY T+I+GLC++G+   A  L EEM    G+      PD +TY+T+ +   +   + +A 
Sbjct: 134 TYNTVISGLCKSGNLEKARELLEEMIRKGGK----SAPDIVTYNTLINAFYRASRIREAC 189

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
               KMK   INPDV+T   L+ G C   D  EA  +   M   G  P+V+T+N I++ L
Sbjct: 190 AFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHAL 249

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  GK+ EA+ +L+ M      PD   +NTL+DGFC  G + RA E+   M     + DV
Sbjct: 250 CVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDV 306

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y IL+NG C+  +++ A  L  E++ +G  P V+ Y +
Sbjct: 307 ITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTS 346



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 129/263 (49%), Gaps = 6/263 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K+   +    L K ++  G    +  Y+ L++ +C+ G V     +
Sbjct: 339 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREI 398

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P   T+  ++ GL  +  I +A +L + L A G  PDV TY TLI+GLC+
Sbjct: 399 LAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCK 458

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A +L +EMA+        C P+ +T  ++  GLC+ G VD A  L ++M  +  
Sbjct: 459 ANRVREACDLADEMASRG------CFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRH 512

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV YTSLI G C ++  ++A  +   M  QGV  +   +  ++  +   G++ EA  
Sbjct: 513 APNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMA 572

Query: 255 LLELMIQIGVRPDASVYNTLMDG 277
           + + M+  G  PD S   TL + 
Sbjct: 573 MYDEMVARGFLPDGSTSKTLEEA 595


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 180/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     +    D    L   +   GL P+L T+N ++N  CK G++     V
Sbjct: 223 PNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKV 282

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    PD V++ +L+ G C      EA ++F ++   G  PDV T+T+LI+ +C+
Sbjct: 283 FDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCK 342

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+ L  +M     E G+  + + +T++ + DG CK+GF+D A      MK   I
Sbjct: 343 AGNLERAVTLVRQMR----ERGL--QMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRI 396

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VV Y +LI G+C     +EA+ L  EM  +G++P+VVT++ I++  CKN     A  
Sbjct: 397 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 456

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M++ GV PDA  Y++L+   C   R++ A  LF +M   G   D F+Y  LI+G+C
Sbjct: 457 LNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHC 516

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +E ALSL+ +M+  G+ P VVTY+
Sbjct: 517 KEGNVESALSLHDKMVKAGVLPDVVTYS 544



 Score =  204 bits (518), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 175/329 (53%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L+ +    +    F  + S G+ P++YTYNIL+   C  G       +
Sbjct: 154 PSVLAYNAVLLALS-DASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSI 212

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P+ VT+ +L+        +  A  L   +R  G KP++ T+ +++NG+C+
Sbjct: 213 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCK 272

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F+EM            PD ++Y+T+  G CK G   +A  +F +M  + I
Sbjct: 273 AGKMEDARKVFDEMVREG------LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 326

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVT+TSLI   C A +   A  L  +M ++G+Q N VTF  +++  CK G +D+A  
Sbjct: 327 MPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL 386

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            +  M Q  ++P    YN L++G+C+ GR++ A+EL   ME+ G   DV +Y  +I+ YC
Sbjct: 387 AVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 446

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           KN +   A  L  +ML KG+ P  +TY++
Sbjct: 447 KNCDTHSAFELNQQMLEKGVLPDAITYSS 475



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 170/338 (50%), Gaps = 23/338 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   + K  + +  ++L +++   GL  +  T+  LI+ FCK G +    + 
Sbjct: 328 PDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLA 387

Query: 75  LGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + R ++ C   P  V + +LI G C   R+ EA  L  ++ A G KPDV TY+T+I+  C
Sbjct: 388 V-RGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 446

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +   T  A  L ++M     E GV+  PDAITYS++   LC E  +  A  LF  M    
Sbjct: 447 KNCDTHSAFELNQQML----EKGVL--PDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLG 500

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYTSLI G C   +   A  L  +M+  GV P+VVT++V++N L K+ +  EA 
Sbjct: 501 LQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQ 560

Query: 254 RLLELMIQIGVRPDASVYNTLMD---------------GFCLTGRVNRAKELFVSMESNG 298
           +LL  +      P  + Y+ LM                GFC+ G +N A +++ SM    
Sbjct: 561 QLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRN 620

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
              D   Y +LI+G+C+   +  ALS + +ML  G  P
Sbjct: 621 WNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAP 658



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 162/338 (47%), Gaps = 21/338 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L          D    L   + + GL PD+ TY+ +I+ +CK       F +
Sbjct: 398 PSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFEL 457

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L     PDA+T++SLI+ LC E R+ +A  LF  +   G +PD FTYT+LI+G C+
Sbjct: 458 NQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCK 517

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL+L ++M       GV+  PD +TYS + +GL K     +A++L  K+  E+ 
Sbjct: 518 EGNVESALSLHDKMVKA----GVL--PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDP 571

Query: 195 NPDVVTYTSL---------------IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            P    Y +L               ++GFC     NEA  ++  M+D+    +   ++V+
Sbjct: 572 IPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVL 631

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+ G + +A    + M+Q G  P+++   +L+ G    G V  A ++   + +   
Sbjct: 632 IHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCS 691

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           + D  +   LI+       ++  L +   M   G+ P+
Sbjct: 692 LADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPS 729


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 178/328 (54%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +     K +       L + +   GL P+L +YN++IN  C+ G++     +
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +  + PD VTF +LI G C      +A  L  ++   G  P+V TYTTLIN +C+
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCK 355

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+   ++M +          P+  TY+T+ DG  ++GF+ +A ++  +M +   
Sbjct: 356 AGNLNRAMEFLDQMRDRG------LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P ++TY +LI G C      +A  L  EM+++G  P+VV+++ I++  C+N ++++A +
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ 469

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+  G+ PD + Y++L+ G C   R+    +LF  M S G   D  +Y  LIN YC
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              +++ AL L+ EM+ KG  P +VTYN
Sbjct: 530 IEGDLDKALRLHDEMIQKGFSPDIVTYN 557



 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 182/359 (50%), Gaps = 30/359 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLS-LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V S+N +   + + K    +   +FK +   G+ P++YTYNILI  FC  G +  G  
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLF 224

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
             G + R+   P+ VT+ ++I   C   +I EA  L   +   G  P++ +Y  +INGLC
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLC 284

Query: 134 RTGHTIVALNLFEEMAN--------------------GNGEFGVVCK---------PDAI 164
           R G       + EEM+                     GN    +V           P+ +
Sbjct: 285 REGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVV 344

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY+T+ + +CK G +++A E   +M+D  ++P+  TYT+LI GF       +A  +  EM
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           ++ G  P ++T+N ++N  C  G+M++AS LL+ MI+ G  PD   Y+T++ GFC    +
Sbjct: 405 VENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQEL 464

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +A +L V M + G   DV +Y  LI G CK + +     L+ EMLS G+ P  VTY +
Sbjct: 465 EKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTS 523



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 173/342 (50%), Gaps = 23/342 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   + K  + +  +    ++   GL P+  TY  LI+ F + G +   + +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++ + FTP  +T+ +LI G C   R+ +A+ L  ++   G  PDV +Y+T+I+G CR
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                 A  L  EM A G         PD  TYS++  GLCK+  + +  +LF +M    
Sbjct: 461 NQELEKAFQLKVEMVAKG-------ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTYTSLI  +C   D ++A  L  EM+ +G  P++VT+NV++N   K  +  EA 
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 254 RLLELMIQIGVRPDASVYNTLMD---------------GFCLTGRVNRAKELFVSMESNG 298
           RLL  ++     P+   YNTL+D               GFC+ G +N A  +  SM   G
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
              +   Y ++I+G+ K   IE A +LY EML  G  P  VT
Sbjct: 634 YKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVT 675



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 172/329 (52%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N++   L +         + + ++     PD  T+N LIN +C +G      V+
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVL 330

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++++  +P+ VT+T+LI  +C    +  A     ++R  G  P+  TYTTLI+G  +
Sbjct: 331 HAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQ 390

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + +EM   NG       P  ITY+ + +G C  G ++ A  L  +M +   
Sbjct: 391 QGFLKQAYQIMKEMVE-NG-----FTPTIITYNALINGHCILGRMEDASGLLQEMIERGF 444

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV+Y+++I GFC   +  +A  L +EM+ +G+ P+V T++ ++  LCK  ++ E   
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD 504

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+ +G+ PD   Y +L++ +C+ G +++A  L   M   G   D+ +Y +LING+ 
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFN 564

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K    + A  L  ++L +   P  +TYNT
Sbjct: 565 KQSRTKEAKRLLLKLLYEESVPNEITYNT 593



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 171/360 (47%), Gaps = 42/360 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR-VSPGFVVLGRI 78
           F+++    A+    +  LS+     S G  P + +YN +++   +  + V     +   +
Sbjct: 135 FDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEM 194

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           + S  +P+  T+  LI+G C    +      F ++   GC P+V TY T+I+  C+    
Sbjct: 195 VESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKI 254

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  L   MA           P+ I+Y+ + +GLC+EG + +  E+  +M      PD 
Sbjct: 255 GEAFKLLRLMALKG------LNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDR 308

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VT+ +LI G+C   ++++A  L  EM+  G+ PNVVT+  ++N +CK G ++ A   L+ 
Sbjct: 309 VTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQ 368

Query: 259 MIQIGVRPDASVYNTLMDGF-----------------------------------CLTGR 283
           M   G+ P+   Y TL+DGF                                   C+ GR
Sbjct: 369 MRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGR 428

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  A  L   M   G + DV SY  +I+G+C+N+E+E A  L  EM++KGI P V TY++
Sbjct: 429 MEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSS 488



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 120/291 (41%), Gaps = 44/291 (15%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L          +    L + +   G  PD+ +Y+ +I+ FC+   +   F +
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQL 470

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++    +PD  T++SLI+GLC + R+ E   LF ++ + G  PD  TYT+LIN  C 
Sbjct: 471 KVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCI 530

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCK-----------------------------PDAIT 165
            G    AL L +EM        +V                               P+ IT
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT 590

Query: 166 YSTITD---------------GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
           Y+T+ D               G C +G +++A  +   M  +    +   Y  +I G   
Sbjct: 591 YNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSK 650

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
             +  +A  L+ EM+  G  P+ VT   +   L   GK  E ++LL+  ++
Sbjct: 651 VGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLK 701



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 21/179 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++  L          D  L L   +   G  PD+ TYN+LIN F K  R      
Sbjct: 515 PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKR 574

Query: 74  VLGRILRSCFTPDAVTFTSLI---------------KGLCAESRIMEAAALFTKLRAFGC 118
           +L ++L     P+ +T+ +LI               KG C +  + EA  +   +   G 
Sbjct: 575 LLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGY 634

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           K +   Y  +I+G  + G+   A NL++EM +          P ++T   +   L  EG
Sbjct: 635 KLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG------FAPHSVTIMALAKSLYHEG 687


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 165/304 (54%), Gaps = 6/304 (1%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F  +   GL  D  TY  LIN  C+ G +     VL  +       DAVT+T LI G C 
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             ++ EA  +  K+      P+V TYT L +GLC+ G    A  L  EM +   E  +  
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNI-- 495

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                TY+++ +GLCK G +++A    + M +  + PDV TYT++I   C + + + A  
Sbjct: 496 ----FTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS 551

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  EM+D+G++P +VT+NV+MN  C +G+++   RLLE M++  + P+ + YN+LM  +C
Sbjct: 552 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC 611

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
           +   +    E++  M S   + +  +Y ILI G+CK + ++ AL  +SEM+ KG R T  
Sbjct: 612 IEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTAS 671

Query: 340 TYNT 343
           +YN 
Sbjct: 672 SYNA 675



 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 171/341 (50%), Gaps = 10/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M     SPP V ++ I+          +T + L   + + GL  +   Y  +I   
Sbjct: 275 LFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALL 330

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G+VS    V+  ++      DA  FT+++ G C +  +  A   F +++  G   D 
Sbjct: 331 CDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADG 390

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LINGLCR G    A  + +EM +   +       DA+TY+ + DG CK G + +A
Sbjct: 391 VTYTALINGLCRAGELKEAERVLQEMEDKGLDV------DAVTYTVLIDGYCKVGKMTEA 444

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +  KM  + + P+VVTYT+L  G C   D   A  L  EM  +G++ N+ T+N ++N 
Sbjct: 445 FLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +++A R +  M + G++PD   Y T++   C +  ++RA  L   M   G    
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y +L+NG+C +  +EG   L   ML K I P   TYN+
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNS 605



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 159/324 (49%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++  L   L +         + + +   GL  D  TY +LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           ++   TP+ VT+T+L  GLC +  +  A  L  ++ + G + ++FTY +LINGLC+ G+ 
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+    +M     E G+  KPD  TY+TI   LC+   +D+A  L  +M D+ I P +
Sbjct: 512 EQAMRTMIDM----DEAGL--KPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY  L+ GFC +      K L   M+++ + PN  T+N +M + C    M   + + + 
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKG 625

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+   V P+ + YN L+ G C    +  A      M   G      SY  LI    K K+
Sbjct: 626 MLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKK 685

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
              A  L+ +M  + +      YN
Sbjct: 686 FTEARRLFEKMRKERLTAEPDVYN 709



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 126/287 (43%), Gaps = 43/287 (14%)

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP--------------------- 120
            F+ D V+F  L+  LC     + +A L  +LR +G  P                     
Sbjct: 193 AFSSDPVSFDLLL--LC-----LPSAPLLLRLRQYGISPSPESCNAVLCRLPLDEAVQLF 245

Query: 121 ------DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
                 +  +Y  L+  LC  G    A  LF+EMA+          PD +TY  +  G C
Sbjct: 246 QELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMAS---------PPDVVTYGIMVHGYC 296

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
               ++ A +L  +M    +  + V YTS+I   C     ++A  +  +M+  GV  +  
Sbjct: 297 TLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAA 356

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
            F  +M+  C+ G +  A    + M + G+  D   Y  L++G C  G +  A+ +   M
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM 416

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           E  G   D  +Y +LI+GYCK  ++  A  ++++M+ K + P VVTY
Sbjct: 417 EDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTY 463



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  + G L ++K  D   SL + +   G+ P + TYN+L+N FC  GRV  G  +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     P+  T+ SL+K  C E  +     ++  + +    P+  TY  LI G C+
Sbjct: 588 LEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCK 647

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL    EM              A +Y+ +   L K+    +A+ LF KM+ E +
Sbjct: 648 ARNMKEALYFHSEMIEKGFRLT------ASSYNALIRLLNKKKKFTEARRLFEKMRKERL 701

Query: 195 --NPDVVTY 201
              PDV  +
Sbjct: 702 TAEPDVYNF 710



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 100/255 (39%), Gaps = 31/255 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K         L   + S GL  +++TYN LIN  CK G +      
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  +   PD  T+T++I  LC    +  A +L  ++   G KP + TY  L+NG C 
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 135 TGHTIVALNLFEEMANGN-----------------------------GEFGVVCKPDAIT 165
           +G       L E M   N                             G       P+  T
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENT 637

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  G CK   + +A     +M ++       +Y +LIR       + EA+ LF +M 
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697

Query: 226 DQGV--QPNVVTFNV 238
            + +  +P+V  F +
Sbjct: 698 KERLTAEPDVYNFYI 712


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 165/304 (54%), Gaps = 6/304 (1%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F  +   GL  D  TY  LIN  C+ G +     VL  +       DAVT+T LI G C 
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             ++ EA  +  K+      P+V TYT L +GLC+ G    A  L  EM +   E  +  
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNI-- 495

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                TY+++ +GLCK G +++A    + M +  + PDV TYT++I   C + + + A  
Sbjct: 496 ----FTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS 551

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  EM+D+G++P +VT+NV+MN  C +G+++   RLLE M++  + P+ + YN+LM  +C
Sbjct: 552 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC 611

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
           +   +    E++  M S   + +  +Y ILI G+CK + ++ AL  +SEM+ KG R T  
Sbjct: 612 IEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTAS 671

Query: 340 TYNT 343
           +YN 
Sbjct: 672 SYNA 675



 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 171/341 (50%), Gaps = 10/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M     SPP V ++ I+          +T + L   + + GL  +   Y  +I   
Sbjct: 275 LFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALL 330

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G+VS    V+  ++      DA  FT+++ G C +  +  A   F +++  G   D 
Sbjct: 331 CDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADG 390

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LINGLCR G    A  + +EM +   +       DA+TY+ + DG CK G + +A
Sbjct: 391 VTYTALINGLCRAGELKEAERVLQEMEDKGLDV------DAVTYTVLIDGYCKVGKMTEA 444

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +  KM  + + P+VVTYT+L  G C   D   A  L  EM  +G++ N+ T+N ++N 
Sbjct: 445 FLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +++A R +  M + G++PD   Y T++   C +  ++RA  L   M   G    
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y +L+NG+C +  +EG   L   ML K I P   TYN+
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNS 605



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 158/324 (48%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++  L   L +         + + +   GL  D  TY +LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           ++   TP+ VT+T+L  GLC +  +  A  L  ++ + G + ++FTY +LINGLC+ G+ 
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+    +M     E G+  KPD  TY+TI   LC+   +D+A  L  +M D+ I P +
Sbjct: 512 EQAMRTMIDM----DEAGL--KPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY  L+ GFC +      K L   M+++ + PN  T+N +M + C    M   + + + 
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKG 625

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+   V P+ + YN L+ G C    +  A      M   G      SY  LI    K K+
Sbjct: 626 MLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKK 685

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
              A  L+ +M    +      YN
Sbjct: 686 FTEARRLFEKMRKDRLTAEPDVYN 709



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 126/287 (43%), Gaps = 43/287 (14%)

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP--------------------- 120
            F+ D V+F  L+  LC     + +A L  +LR +G  P                     
Sbjct: 193 AFSSDPVSFDLLL--LC-----LPSAPLLLRLRQYGISPSPESCNAVLCRLPLDEAVQLF 245

Query: 121 ------DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
                 +  +Y  L+  LC  G    A  LF+EMA+          PD +TY  +  G C
Sbjct: 246 QELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMAS---------PPDVVTYGIMVHGYC 296

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
               ++ A +L  +M    +  + V YTS+I   C     ++A  +  +M+  GV  +  
Sbjct: 297 TLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAA 356

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
            F  +M+  C+ G +  A    + M + G+  D   Y  L++G C  G +  A+ +   M
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM 416

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           E  G   D  +Y +LI+GYCK  ++  A  ++++M+ K + P VVTY
Sbjct: 417 EDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTY 463



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  + G L ++K  D   SL + +   G+ P + TYN+L+N FC  GRV  G  +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     P+  T+ SL+K  C E  +     ++  + +    P+  TY  LI G C+
Sbjct: 588 LEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCK 647

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL    EM              A +Y+ +   L K+    +A+ LF KM+ + +
Sbjct: 648 ARNMKEALYFHSEMIEKGFRLT------ASSYNALIRLLNKKKKFTEARRLFEKMRKDRL 701

Query: 195 --NPDVVTY 201
              PDV  +
Sbjct: 702 TAEPDVYNF 710



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 31/255 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K         L   + S GL  +++TYN LIN  CK G +      
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  +   PD  T+T++I  LC    +  A +L  ++   G KP + TY  L+NG C 
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 135 TGHTIVALNLFEEMANGN-----------------------------GEFGVVCKPDAIT 165
           +G       L E M   N                             G       P+  T
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENT 637

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  G CK   + +A     +M ++       +Y +LIR       + EA+ LF +M 
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697

Query: 226 DQGV--QPNVVTFNV 238
              +  +P+V  F +
Sbjct: 698 KDRLTAEPDVYNFYI 712


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 176/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +     K K  D      + +   GL P+L T+N++IN  C+ GR+     V
Sbjct: 16  PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R  + PD VT+ +L+ G C E    +A  L  ++   G  P+V TYT+LIN +C+
Sbjct: 76  LVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+  F++M         +C P+  TY+TI +G  ++G +D+A  +  +M     
Sbjct: 136 AGNLNRAMEFFDQM-----HVRGLC-PNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGF 189

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +VTY +LI G C      EA  L  +M+ +GV P+VV+++ I++   +N ++D A +
Sbjct: 190 IPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQ 249

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   MI   V PDA  Y++L+ G C   R+  A ++F  M +     D F+Y  LIN YC
Sbjct: 250 MKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYC 309

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K  ++  AL L+ EM+ KG  P  VTYN
Sbjct: 310 KEGDLNKALHLHDEMIQKGFLPDAVTYN 337



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 164/307 (53%), Gaps = 6/307 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L  FK +   G  P++ TYN +I+ +CK+ R    F  L  +      P+ +TF  +I G
Sbjct: 3   LRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING 62

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
           LC + R+ E + +  ++   G  PD  TY TL+NG C+ G+   AL L  EM   NG   
Sbjct: 63  LCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVR-NG--- 118

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
               P+ +TY+++ + +CK G +++A E F +M    + P+  TYT++I GF      +E
Sbjct: 119 --LSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDE 176

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  +  EM   G  P++VT+N ++N  C  G+M+EA  LL+ M+  GV PD   Y+T++ 
Sbjct: 177 AYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIIS 236

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           GF     ++RA ++ V M     + D  +Y  LI G C+ + +  A  ++ EML+  + P
Sbjct: 237 GFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPP 296

Query: 337 TVVTYNT 343
              TY T
Sbjct: 297 DEFTYTT 303



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 172/372 (46%), Gaps = 44/372 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN++   L ++        +   ++  G  PD  TYN L+N +CK G      V+
Sbjct: 51  PNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVL 110

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R+  +P+ VT+TSLI  +C    +  A   F ++   G  P+  TYTT+ING  +
Sbjct: 111 HAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQ 170

Query: 135 TGHTIVALNLFEEMA---------------NGNGEFG-----------VVCK---PDAIT 165
            G    A  +  EM                NG+   G           +V K   PD ++
Sbjct: 171 QGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVS 230

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           YSTI  G  +   +D+A ++ ++M  +++ PD VTY+SLI+G C      EA  +F EM+
Sbjct: 231 YSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEML 290

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
              + P+  T+  ++N  CK G +++A  L + MIQ G  PDA  YN L++G     R  
Sbjct: 291 TIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSK 350

Query: 286 RAKELFVSMESNGCMRDVFSYGILIN---------------GYCKNKEIEGALSLYSEML 330
            A+ L + +  +  +    +Y  LI                G+C    ++ A  ++  M+
Sbjct: 351 EARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMI 410

Query: 331 SKGIRPTVVTYN 342
           +K  +P    YN
Sbjct: 411 NKNHKPNEAIYN 422



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 164/341 (48%), Gaps = 21/341 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L          +  + L + +   G+ PD+ +Y+ +I+ F +   +   F +
Sbjct: 191 PSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQM 250

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PDAVT++SLI+GLC + R+ EA  +F ++      PD FTYTTLIN  C+
Sbjct: 251 KVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCK 310

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL+L +EM     + G +  PDA+TY+ + +GL K+    +A+ L LK+  ++ 
Sbjct: 311 EGDLNKALHLHDEMI----QKGFL--PDAVTYNVLINGLNKQARSKEARRLLLKLFYDDS 364

Query: 195 NPDVVTYTSLI---------------RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            P  VTY +LI               +GFC     +EA  +F  M+++  +PN   +NVI
Sbjct: 365 IPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVI 424

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+ G + +A +L + M+ +   P       L+      G      E+   +  +  
Sbjct: 425 IHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILRSCK 484

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           + D     +L+    K   ++   +L +EM   G+ P+  T
Sbjct: 485 LTDAELSKVLVEINQKEGNMDMVFNLLTEMAKDGLIPSTGT 525



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++  L     K    +  L L   +   G  PD  TYN+LIN   K  R      
Sbjct: 295 PPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARR 354

Query: 74  VLGRILRSCFTPDAVTFTSLI---------------KGLCAESRIMEAAALFTKLRAFGC 118
           +L ++      P AVT+ +LI               KG C +  + EA  +F  +     
Sbjct: 355 LLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNH 414

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           KP+   Y  +I+G CR G+ + A  L++EM +      V   P  +T   +   L  EG 
Sbjct: 415 KPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVH------VDFVPHTVTVLALVKALFTEGM 468

Query: 179 VDKAKELF 186
             +  E+ 
Sbjct: 469 DGELNEVI 476


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 165/304 (54%), Gaps = 6/304 (1%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F  +   GL  D  TY  LIN  C+ G +     VL  +       DAVT+T LI G C 
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             ++ EA  +  K+      P+V TYT L +GLC+ G    A  L  EM +   E  +  
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNI-- 495

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                TY+++ +GLCK G +++A    + M +  + PDV TYT++I   C + + + A  
Sbjct: 496 ----FTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHS 551

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  EM+D+G++P +VT+NV+MN  C +G+++   RLLE M++  + P+ + YN+LM  +C
Sbjct: 552 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC 611

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
           +   +    E++  M S   + +  +Y ILI G+CK + ++ AL  +SEM+ KG R T  
Sbjct: 612 IEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTAS 671

Query: 340 TYNT 343
           +YN 
Sbjct: 672 SYNA 675



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 171/341 (50%), Gaps = 10/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M     SPP V ++ I+          +T + L   + + GL  +   Y  +I   
Sbjct: 275 LFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALL 330

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G+VS    V+  ++      DA  FT+++ G C +  +  A   F +++  G   D 
Sbjct: 331 CDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADG 390

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LINGLCR G    A  + +EM +   +       DA+TY+ + DG CK G + +A
Sbjct: 391 VTYTALINGLCRAGELKEAERVLQEMEDKGLDV------DAVTYTVLIDGYCKVGKMTEA 444

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +  KM  + + P+VVTYT+L  G C   D   A  L  EM  +G++ N+ T+N ++N 
Sbjct: 445 FLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +++A R +  M + G++PD   Y T++   C +  ++RA  L   M   G    
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y +L+NG+C +  +EG   L   ML K I P   TYN+
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNS 605



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 156/341 (45%), Gaps = 29/341 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++  L   L +         + + +   GL  D  TY +LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           ++   TP+ VT+T+L  GLC +  +  A  L  ++ + G + ++FTY +LINGLC+ G+ 
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 139 IVALNLFEEMANGNGE---------FGVVC--------------------KPDAITYSTI 169
             A+    +M     +          G +C                    KP  +TY+ +
Sbjct: 512 EQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVL 571

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +G C  G V+  K L   M ++NI+P+  TY SL++ +C   +      ++  M+ Q V
Sbjct: 572 MNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEV 631

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PN  T+N+++   CK   M EA      MI+ G R  AS YN L+       +   A+ 
Sbjct: 632 VPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARR 691

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           LF  M       +   Y   I+       +E  L+L  E++
Sbjct: 692 LFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELV 732



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 126/287 (43%), Gaps = 43/287 (14%)

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP--------------------- 120
            F+ D V+F  L+  LC     + +A L  +LR +G  P                     
Sbjct: 193 AFSSDPVSFDLLL--LC-----LPSAPLLLRLRQYGISPSPESCNAVLCRLPLDEAVQLF 245

Query: 121 ------DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
                 +  +Y  L+  LC  G    A  LF+EMA+          PD +TY  +  G C
Sbjct: 246 QELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMAS---------PPDVVTYGIMVHGYC 296

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
               ++ A +L  +M    +  + V YTS+I   C     ++A  +  +M+  GV  +  
Sbjct: 297 TLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAA 356

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
            F  +M+  C+ G +  A    + M + G+  D   Y  L++G C  G +  A+ +   M
Sbjct: 357 VFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEM 416

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           E  G   D  +Y +LI+GYCK  ++  A  ++++M+ K + P VVTY
Sbjct: 417 EDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTY 463



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  + G L ++K  D   SL + +   G+ P + TYN+L+N FC  GRV  G  +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     P+  T+ SL+K  C E  +     ++  + +    P+  TY  LI G C+
Sbjct: 588 LEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCK 647

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL    EM              A +Y+ +   L K+    +A+ LF KM+ E +
Sbjct: 648 ARNMKEALYFHSEMIEKGFRLT------ASSYNALIRLLNKKKKFTEARRLFEKMRKERL 701

Query: 195 --NPDVVTY 201
              PDV  +
Sbjct: 702 TAEPDVYNF 710



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 100/255 (39%), Gaps = 31/255 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K         L   + S GL  +++TYN LIN  CK G +      
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  +   PD  T+T++I  LC    +  A +L  ++   G KP + TY  L+NG C 
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 135 TGHTIVALNLFEEMANGN-----------------------------GEFGVVCKPDAIT 165
           +G       L E M   N                             G       P+  T
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENT 637

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  G CK   + +A     +M ++       +Y +LIR       + EA+ LF +M 
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697

Query: 226 DQGV--QPNVVTFNV 238
            + +  +P+V  F +
Sbjct: 698 KERLTAEPDVYNFYI 712


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 182/343 (53%), Gaps = 11/343 (3%)

Query: 6   YMLRMHPSPPPVCSFNILFGCL-----AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           ++   H   P V S+N +   L     + ++ YD    +F+ +   G+ P++YTYN++I 
Sbjct: 156 HLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIR 215

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
                G +  G   + ++ +   +P+ VT+ +LI   C + ++ EA AL   +   G   
Sbjct: 216 GVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAA 275

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ +Y ++INGLC  G       L EEM  G G       PD +TY+T+ +G CKEG + 
Sbjct: 276 NLISYNSVINGLCGKGRMSEVGELVEEM-RGKG-----LVPDEVTYNTLVNGFCKEGNLH 329

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +   L  +M  + ++P+VVTYT+LI   C A + + A  +F +M  +G++PN  T+  ++
Sbjct: 330 QGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLI 389

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  C+ G M+EA ++L  MI  G  P    YN L+ G+C  GRV  A  +   M   G  
Sbjct: 390 DGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLP 449

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            DV SY  +I G+C+ +E+  A  +  EM+ KG+ P  VTY++
Sbjct: 450 PDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSS 492



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 181/328 (55%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K K     ++L + +   G+  +L +YN +IN  C  GR+S    +
Sbjct: 240 PNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGEL 299

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PD VT+ +L+ G C E  + +   L +++   G  P+V TYTTLIN +C+
Sbjct: 300 VEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCK 359

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+ +F++M           +P+  TY+T+ DG C++G +++A ++  +M     
Sbjct: 360 AGNLSRAVEIFDQMRVRG------LRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGF 413

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P VVTY +L+ G+C+     EA  +   M+++G+ P+VV+++ ++   C+  ++ +A +
Sbjct: 414 SPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQ 473

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E M++ GV PD   Y++L+ G CL  ++  A +LF  M   G   D  +Y  LIN YC
Sbjct: 474 MKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYC 533

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            + E+  AL L+ EM+ +G  P  VTY+
Sbjct: 534 VDGELSKALRLHDEMVQRGFLPDNVTYS 561



 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 182/341 (53%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+R   SP  V ++N++   +      +  L   +++   G+ P++ TYN LI+  
Sbjct: 194 VFRDMVRNGVSPN-VYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDAS 252

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  +V     +L  +       + +++ S+I GLC + R+ E   L  ++R  G  PD 
Sbjct: 253 CKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDE 312

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY TL+NG C+ G+    L L  EM  G G       P+ +TY+T+ + +CK G + +A
Sbjct: 313 VTYNTLVNGFCKEGNLHQGLVLLSEMV-GKG-----LSPNVVTYTTLINCMCKAGNLSRA 366

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+F +M+   + P+  TYT+LI GFC     NEA  +  EM+  G  P+VVT+N +++ 
Sbjct: 367 VEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHG 426

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G++ EA  +L  M++ G+ PD   Y+T++ GFC    + +A ++   M   G + D
Sbjct: 427 YCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPD 486

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y  LI G C  +++  A  L+ EM+ +G+ P  VTY +
Sbjct: 487 TVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTS 527



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 168/325 (51%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+N +   L        V  L + +   GL PD  TYN L+N FCK G +  G V+L  +
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    +P+ VT+T+LI  +C    +  A  +F ++R  G +P+  TYTTLI+G C+ G  
Sbjct: 339 VGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLM 398

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  +  EM            P  +TY+ +  G C  G V +A  +   M +  + PDV
Sbjct: 399 NEAYKVLSEMIVSG------FSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDV 452

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V+Y+++I GFC   +  +A  +  EM+++GV P+ VT++ ++  LC   K+ EA  L   
Sbjct: 453 VSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFRE 512

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M++ G+ PD   Y +L++ +C+ G +++A  L   M   G + D  +Y +LING  K   
Sbjct: 513 MMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKAR 572

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
            + A  L  ++  +   P  VTYNT
Sbjct: 573 TKVAKRLLLKLFYEESVPDDVTYNT 597



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 170/330 (51%), Gaps = 21/330 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L  C+ K  +    + +F ++   GL P+  TY  LI+ FC+ G ++  + V
Sbjct: 345 PNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKV 404

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ S F+P  VT+ +L+ G C   R+ EA  +   +   G  PDV +Y+T+I G CR
Sbjct: 405 LSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCR 464

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  + EEM     E GV+  PD +TYS++  GLC +  + +A +LF +M    +
Sbjct: 465 ERELGKAFQMKEEMV----EKGVL--PDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGL 518

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTYTSLI  +C   + ++A  L  EM+ +G  P+ VT++V++N L K  +   A R
Sbjct: 519 PPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKR 578

Query: 255 LLELMIQIGVRPDASVYNTLMD---------------GFCLTGRVNRAKELFVSMESNGC 299
           LL  +      PD   YNTL++               GFC+ G +N A  +F +M     
Sbjct: 579 LLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNH 638

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEM 329
             +   Y ++I+G+ +   +  A +LY E+
Sbjct: 639 KPNAAIYNLMIHGHSRGGNVHKAYNLYMEL 668



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 133/304 (43%), Gaps = 21/304 (6%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S++ +     + +       + + +   G+ PD  TY+ LI   C   ++   F 
Sbjct: 449 PPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFD 508

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   ++R    PD VT+TSLI   C +  + +A  L  ++   G  PD  TY+ LINGL 
Sbjct: 509 LFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLN 568

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD---------------GLCKEGF 178
           +   T VA  L  ++      F     PD +TY+T+ +               G C +G 
Sbjct: 569 KKARTKVAKRLLLKL------FYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGL 622

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +++A  +F  M   N  P+   Y  +I G     + ++A  L++E+       + V    
Sbjct: 623 MNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIA 682

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++  L + G  DE SRLL+ +++     DA V   L++     G ++    +   M  +G
Sbjct: 683 LVKALAREGMNDELSRLLQNILRSCRLNDAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDG 742

Query: 299 CMRD 302
            + D
Sbjct: 743 LLPD 746


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 178/328 (54%), Gaps = 9/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F IL   L ++   +    L  R+  +G  PD   YN LI+ + K       F  
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++++   P  VT+T+++ GLC   R  +A  L  ++R  GC P+++TY  ++ GLC 
Sbjct: 68  LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  + EEMA   G F     PD +TY++   GLCK   VD+A++   +M    +
Sbjct: 128 ERKLDEAKKMLEEMAV-RGYF-----PDVVTYNSFIKGLCKCDRVDEARKFLARMP---V 178

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV+YT++I G C + D + A  +  +M ++G  P+VVT++ +++  CK G+++ A  
Sbjct: 179 TPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMG 238

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M+++G RP+   YN+L+      G + +A+++ V ME  G   DV SY   I+G C
Sbjct: 239 LLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLC 298

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K + ++ A +++  M+ +G  P   +Y+
Sbjct: 299 KAERVKKAKAVFDRMVERGCTPNASSYS 326



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 185/372 (49%), Gaps = 47/372 (12%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M++ H  P  V   NI+ G     +  D V  L   +   G  P++YTYN+++   C+  
Sbjct: 71  MVKNHCLPTVVTYTNIVDGLCKAGRTKDAV-KLLDEMRDKGCSPNIYTYNVIVEGLCEER 129

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++     +L  +    + PD VT+ S IKGLC   R+ EA     ++      PDV +YT
Sbjct: 130 KLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV---TPDVVSYT 186

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD------ 180
           T+INGLC++G    A  + ++M N        C PD +TYS++ DG CK G V+      
Sbjct: 187 TVINGLCKSGDLDSASRMLDQMTNRG------CTPDVVTYSSLIDGFCKGGEVERAMGLL 240

Query: 181 -----------------------------KAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                                        KA+++ ++M+     PDVV+Y + I G C A
Sbjct: 241 DSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKA 300

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
               +AK +F  M+++G  PN  ++++++ ELCK  ++D+A  L+E   +     D  +Y
Sbjct: 301 ERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLY 360

Query: 272 NTLMDGFCLTGRVNRAKELFVS-MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
             L+DG C  GR + A  LF   ++   C  DVF Y ++++ +CK ++I+ AL ++ +ML
Sbjct: 361 TVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQML 420

Query: 331 SKGIRPTVVTYN 342
            +     VVT+N
Sbjct: 421 ERNC-CNVVTWN 431



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 144/266 (54%), Gaps = 10/266 (3%)

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           I +SC  PDA TF  L++GLC  +++ +A  L  +++  GC PD   Y  LI+G  +   
Sbjct: 2   IDKSC-QPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A     EM   +      C P  +TY+ I DGLCK G    A +L  +M+D+  +P+
Sbjct: 61  FGQAFKFLAEMVKNH------CLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPN 114

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           + TY  ++ G C     +EAK +  EM  +G  P+VVT+N  +  LCK  ++DEA + L 
Sbjct: 115 IYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLA 174

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M    V PD   Y T+++G C +G ++ A  +   M + GC  DV +Y  LI+G+CK  
Sbjct: 175 RM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGG 231

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
           E+E A+ L   ML  G RP +V YN+
Sbjct: 232 EVERAMGLLDSMLKLGCRPNMVAYNS 257



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 181/406 (44%), Gaps = 79/406 (19%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P + ++N++   L + +  D    + + +   G FPD+ TYN  I   CK  R
Sbjct: 106 MRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDR 165

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V      L R+     TPD V++T++I GLC    +  A+ +  ++   GC PDV TY++
Sbjct: 166 VDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSS 222

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+G C+ G    A+ L + M        + C+P+ + Y+++   L + G + KA+++ +
Sbjct: 223 LIDGFCKGGEVERAMGLLDSM------LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLV 276

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN- 246
           +M+     PDVV+Y + I G C A    +AK +F  M+++G  PN  ++++++ ELCK  
Sbjct: 277 EMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKK 336

Query: 247 ----------------------------------GKMDEASRLLELMIQIGV-RPDASVY 271
                                             G+ DEA  L   ++   +  PD   Y
Sbjct: 337 ELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFY 396

Query: 272 NTLMD----------------------------------GFCLTGRVNRAKELFVSMESN 297
           N ++D                                  G C+  R++ A+ + ++M   
Sbjct: 397 NVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDE 456

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G + D  +YG L++  CK  +   AL L+ E +  G  P VVTY+ 
Sbjct: 457 GFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSA 502



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 171/360 (47%), Gaps = 44/360 (12%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           ++ RM P  P V S+  +   L K+   D+   +  ++ + G  PD+ TY+ LI+ FCK 
Sbjct: 172 FLARM-PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKG 230

Query: 66  GRVSPGFVVLGRIL-----------------------------------RSCFTPDAVTF 90
           G V     +L  +L                                   R  FTPD V++
Sbjct: 231 GEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSY 290

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
            + I GLC   R+ +A A+F ++   GC P+  +Y+ L+  LC+      A+ L E+   
Sbjct: 291 NACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQ--- 347

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI-NPDVVTYTSLIRGFC 209
              ++ +V   D + Y+ + DGLCK G  D+A  LF K+ DE I  PDV  Y  ++   C
Sbjct: 348 AREKYQIV---DILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHC 404

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                ++A  +  +M+++    NVVT+N++++ LC + ++ +A  +L  M+  G  PD  
Sbjct: 405 KRRQIDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFV 463

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y TL+D  C  G+   A ELF      GC+ DV +Y  LI G       E A  L++++
Sbjct: 464 TYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL 523



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 164/339 (48%), Gaps = 14/339 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML++   P  V ++N L G L +  H      +   +   G  PD+ +YN  I+  
Sbjct: 239 LLDSMLKLGCRPNMV-AYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 297

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  RV     V  R++    TP+A +++ L++ LC +  + +A  L  + R      D+
Sbjct: 298 CKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDI 357

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YT L++GLC+ G    A  LF ++ +       +C+PD   Y+ + D  CK   +DKA
Sbjct: 358 LLYTVLLDGLCKGGRFDEACALFSKVLDEK-----ICEPDVFFYNVMLDSHCKRRQIDKA 412

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++  +M + N   +VVT+  L+ G C  +  ++A+ + + M+D+G  P+ VT+  +++ 
Sbjct: 413 LQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDA 471

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           +CK GK   A  L E  ++ G  PD   Y+ L+ G         A  LF  +       D
Sbjct: 472 MCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL-------D 524

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           V  +  +I GY +N   +  L L+ E++   + P   T+
Sbjct: 525 VALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTF 563



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 141/280 (50%), Gaps = 18/280 (6%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKR-LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           + +L   L K   +D   +LF + L+     PD++ YN++++  CK  ++     +  ++
Sbjct: 360 YTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQM 419

Query: 79  L-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           L R+C   + VT+  L+ GLC + R+ +A  +   +   G  PD  TY TL++ +C+ G 
Sbjct: 420 LERNCC--NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGK 477

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
           +  AL LFEE   G       C PD +TYS +  GL  E   ++A  LF K+       D
Sbjct: 478 SAAALELFEEAVKGG------CVPDVVTYSALITGLVHENMAEEAYLLFTKL-------D 524

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF-NVIMNELCKNGKMDEASRLL 256
           V  + ++I G+      +    LF+E+++  V+PN  TF   I  +L K   + +A  L 
Sbjct: 525 VALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLF 584

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           +  ++ G  PD  V NTL+D F   G +  A+ +F SM+ 
Sbjct: 585 DRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 80/155 (51%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M D++  PD  T+  L+RG C +N   +A+ L   M + G  P+   +N +++   K   
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
             +A + L  M++    P    Y  ++DG C  GR   A +L   M   GC  ++++Y +
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ G C+ ++++ A  +  EM  +G  P VVTYN+
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNS 155


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 173/329 (52%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +   L   L K         + + L   G  PD+ TYN+LI+ +CK G +     +
Sbjct: 143 PDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQL 202

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+     +PD VT+ ++++ LC   ++ EA  +  +     C PDV TYT LI   C+
Sbjct: 203 LDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCK 259

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ L +EM +        CKPD +TY+ + +G+CKEG +D+A      M     
Sbjct: 260 ESGVGQAMKLLDEMRDKG------CKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGC 313

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V+T+  ++R  C    W +A+    EM+ +G  P+VVTFN+++N LC+ G +  A  
Sbjct: 314 QPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAID 373

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +LE M Q G  P++  YN L+   C   ++ RA E    M S GC  D+ +Y  L+   C
Sbjct: 374 VLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALC 433

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+ +++ A+ + +++ SKG  P ++TYNT
Sbjct: 434 KDGKVDVAVEILNQLGSKGCSPVLITYNT 462



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 175/330 (53%), Gaps = 11/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L     K     + L L  R++   + PD+ TYN ++   C  G++     V
Sbjct: 178 PDVITYNVLISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGKLKEAMEV 234

Query: 75  LGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L R + R C+ PD +T+T LI+  C ES + +A  L  ++R  GCKPDV TY  LING+C
Sbjct: 235 LDRQMQRECY-PDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGIC 293

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+     M +    +G  C+P+ IT++ I   +C  G    A++   +M  + 
Sbjct: 294 KEGRLDEAIRFLNHMPS----YG--CQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKG 347

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +P VVT+  LI   C       A  +  +M   G  PN +++N +++ LCK+ KM+ A 
Sbjct: 348 CSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAI 407

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             L++M+  G  PD   YNTL+   C  G+V+ A E+   + S GC   + +Y  +I+G 
Sbjct: 408 EYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGL 467

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K  + + A+ L  EM  KG++P ++TY+T
Sbjct: 468 SKVGKTDDAIKLLDEMKGKGLKPDIITYST 497



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 153/317 (48%), Gaps = 9/317 (2%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L +N   +      + +   G  PD+     LI   CK G+      V+  +  S   PD
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            +T+  LI G C    I  A  L  ++      PDV TY T++  LC +G    A+ + +
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRMSV---SPDVVTYNTILRTLCDSGKLKEAMEVLD 236

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
                       C PD ITY+ + +  CKE  V +A +L  +M+D+   PDVVTY  LI 
Sbjct: 237 RQMQRE------CYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLIN 290

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C     +EA      M   G QPNV+T N+I+  +C  G+  +A + L  MI+ G  P
Sbjct: 291 GICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSP 350

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
               +N L++  C  G + RA ++   M  +GC  +  SY  L++  CK+K++E A+   
Sbjct: 351 SVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYL 410

Query: 327 SEMLSKGIRPTVVTYNT 343
             M+S+G  P +VTYNT
Sbjct: 411 DIMVSRGCYPDIVTYNT 427



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL     K       + L   +   G  PD+ TYN+LIN  CK GR+      
Sbjct: 245 PDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRF 304

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ +T   +++ +C+  R M+A     ++   GC P V T+  LIN LCR
Sbjct: 305 LNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCR 364

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+++ E+M          C P++++Y+ +   LCK+  +++A E    M     
Sbjct: 365 KGLIGRAIDVLEKMPQHG------CTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGC 418

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY +L+   C     + A  +  ++  +G  P ++T+N +++ L K GK D+A +
Sbjct: 419 YPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIK 478

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M   G++PD   Y+TL+ G    G+V+ A   F  +E  G   +  +Y  ++ G C
Sbjct: 479 LLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLC 538

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K ++   A+   + M+++G +PT  +Y
Sbjct: 539 KARQTVRAIDFLAYMVARGCKPTETSY 565



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 162/320 (50%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   + K    D  +     + S G  P++ T+NI++   C  GR       
Sbjct: 280 PDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKF 339

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R   +P  VTF  LI  LC +  I  A  +  K+   GC P+  +Y  L++ LC+
Sbjct: 340 LAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCK 399

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+   + M +        C PD +TY+T+   LCK+G VD A E+  ++  +  
Sbjct: 400 DKKMERAIEYLDIMVSRG------CYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGC 453

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P ++TY ++I G       ++A  L  EM  +G++P+++T++ ++  L + GK+DEA  
Sbjct: 454 SPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIA 513

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               + ++GV+P+A  YN++M G C   +  RA +    M + GC     SY ILI G  
Sbjct: 514 FFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLA 573

Query: 315 KNKEIEGALSLYSEMLSKGI 334
                + AL L +E+ S+G+
Sbjct: 574 YEGLAKEALELLNELCSRGV 593



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 147/296 (49%), Gaps = 6/296 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + NI+   +     +         +   G  P + T+NILIN  C+ G +     V
Sbjct: 315 PNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDV 374

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ +   TP+++++  L+  LC + ++  A      + + GC PD+ TY TL+  LC+
Sbjct: 375 LEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCK 434

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA+ +  ++ +        C P  ITY+T+ DGL K G  D A +L  +MK + +
Sbjct: 435 DGKVDVAVEILNQLGSKG------CSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGL 488

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY++L+ G       +EA   F ++ + GV+PN +T+N IM  LCK  +   A  
Sbjct: 489 KPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAID 548

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            L  M+  G +P  + Y  L++G    G    A EL   + S G ++   +  +++
Sbjct: 549 FLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVV 604



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
            H   P   S+N L   L K+K  +  +     + S G +PD+ TYN L+   CK G+V 
Sbjct: 380 QHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD 439

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +L ++     +P  +T+ ++I GL    +  +A  L  +++  G KPD+ TY+TL+
Sbjct: 440 VAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLV 499

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            GL R G    A+  F ++     E GV  KP+AITY++I  GLCK     +A +    M
Sbjct: 500 GGLSREGKVDEAIAFFHDLE----EMGV--KPNAITYNSIMLGLCKARQTVRAIDFLAYM 553

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                 P   +Y  LI G  Y     EA  L  E+  +GV
Sbjct: 554 VARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGV 593



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           V  N  +  L +NG+++E  + LE M+  G  PD     +L+ G C TG+  +A  +   
Sbjct: 111 VENNNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEI 170

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +E +G + DV +Y +LI+GYCK  EI  AL L   M    + P VVTYNT
Sbjct: 171 LEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNT 217


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 187/356 (52%), Gaps = 22/356 (6%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDT-----------VLSLFKRLN---SIGL 48
           +FD +L +H  P  V +FN +   +++                 V+SLF R+    SI +
Sbjct: 36  LFDELL-IHARPASVVAFNQILNAVSRASRASGRRSSSTSESELVVSLFNRMVRECSIKV 94

Query: 49  FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA- 107
            P+  TY+ILI C C+MGR+   F   G IL++ +  + +    L+KGLC   R+ EA  
Sbjct: 95  APNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMD 154

Query: 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
            L  ++   GC PD  +Y+ L+ G C       AL L   MAN +G     C P+ +TY+
Sbjct: 155 VLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGR---SCPPNVVTYT 211

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           T+ DGLCK    D+A+ +F +M D  + P+  TY  LI G+     W E   +  +M  +
Sbjct: 212 TVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSAR 271

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G++P+  T+  ++N LC    + E    L+LM++ G+ PD  ++N     +   G +++A
Sbjct: 272 GLKPDCYTYGSLLNYLC---ALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKA 328

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++F  M  +G   +V +YG LI+  CK   ++ A   +++M+++G+ P +V +N+
Sbjct: 329 MDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNS 384



 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 177/330 (53%), Gaps = 9/330 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++  +   L K + +D    +F+++   G+ P+  TYN LI+ +  +G+      
Sbjct: 204 PPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQ 263

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L ++      PD  T+ SL+  LCA S   E  +    +   G  PD   +    +   
Sbjct: 264 MLEKMSARGLKPDCYTYGSLLNYLCALS---EMHSFLDLMVENGLSPDHHIFNIFFSAYA 320

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+++F +M     + G+   P+ + Y  + D LCK G VD A+  F +M +E 
Sbjct: 321 KCGMIDKAMDIFNKMR----QHGL--SPNVVNYGALIDALCKLGRVDDAEVKFNQMINEG 374

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P++V + SL+ G C  + W  A+ L  EM+DQG+ PN V FN ++  LC  G++ E  
Sbjct: 375 VTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGR 434

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RL++LM  +GVRPDA  Y  L+ G+CL GR + A+++F  M S G      +Y  L++GY
Sbjct: 435 RLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGY 494

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C    I+ A  L+ EML KG+ P VVTYNT
Sbjct: 495 CSASRIDDAYCLFREMLRKGVTPGVVTYNT 524



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 169/322 (52%), Gaps = 6/322 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FNI F   AK    D  + +F ++   GL P++  Y  LI+  CK+GRV    V   +++
Sbjct: 312 FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI 371

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
               TP+ V F SL+ GLC   +   A  L  ++   G  P+   + TLI  LC  G  +
Sbjct: 372 NEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVM 431

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
               L + M +      V  +PDA +Y+ +  G C  G  D+A+++F  M    ++P  V
Sbjct: 432 EGRRLIDLMEH------VGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEV 485

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY +L+ G+C A+  ++A CLF EM+ +GV P VVT+N I++ L +  +  EA  L   M
Sbjct: 486 TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNM 545

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           I  G + D   YN +++G C +  V+ A ++F S+ S G   ++ ++ I+I    K    
Sbjct: 546 INSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRK 605

Query: 320 EGALSLYSEMLSKGIRPTVVTY 341
           E A+ L++ + + G+ P VVTY
Sbjct: 606 EDAMDLFAAIPANGLVPNVVTY 627



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 160/295 (54%), Gaps = 6/295 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           GL PD + +NI  + + K G +     +  ++ +   +P+ V + +LI  LC   R+ +A
Sbjct: 304 GLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDA 363

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
              F ++   G  P++  + +L+ GLC       A  L  EM +       +C P+A+ +
Sbjct: 364 EVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQG-----IC-PNAVFF 417

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+   LC  G V + + L   M+   + PD  +YT LI G+C A   +EA+ +F  M+ 
Sbjct: 418 NTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVS 477

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G+ P  VT+N +++  C   ++D+A  L   M++ GV P    YNT++ G   T R + 
Sbjct: 478 IGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSE 537

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           AKEL+++M ++G   D+++Y I++NG CK+  ++ A  ++  + SKG++  ++T+
Sbjct: 538 AKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITF 592



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 139/287 (48%), Gaps = 6/287 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           L   +  +G+ PD ++Y  LI+ +C  GR      V   ++    +P  VT+ +L+ G C
Sbjct: 436 LIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYC 495

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
           + SRI +A  LF ++   G  P V TY T+++GL +T     A  L+  M N     G  
Sbjct: 496 SASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINS----GTK 551

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C  D  TY+ I +GLCK   VD+A ++F  +  + +  +++T+T +I          +A 
Sbjct: 552 C--DIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 609

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF  +   G+ PNVVT+ ++   L + G ++E   L   M + G  P++ + N L+   
Sbjct: 610 DLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 669

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
              G ++RA      ++      +  +  +LI+ +  ++    A SL
Sbjct: 670 LHRGDISRAGAYLSKLDERNFSVEASTTSLLISIFTSDEYQHHAKSL 716



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 9/256 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+ +  SP  V ++N L          D    LF+ +   G+ P + TYN +++  
Sbjct: 471 VFDGMVSIGLSPTEV-TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 529

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            +  R S    +   ++ S    D  T+  ++ GLC  + + EA  +F  L + G + ++
Sbjct: 530 FQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNI 589

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            T+T +I  L + G    A++LF  + ANG         P+ +TY  + + L +EG +++
Sbjct: 590 ITFTIMIGALLKGGRKEDAMDLFAAIPANG-------LVPNVVTYRLVAENLIEEGSLEE 642

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
              LF  M+     P+     +L+R   +  D + A     ++ ++       T +++++
Sbjct: 643 FDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLIS 702

Query: 242 ELCKNGKMDEASRLLE 257
               +     A  L E
Sbjct: 703 IFTSDEYQHHAKSLPE 718



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 7/220 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           +C+F  MLR   +P  V ++N +   L + K +     L+  + + G   D+YTYNI++N
Sbjct: 504 YCLFREMLRKGVTPG-VVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILN 562

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK   V   F +   +       + +TFT +I  L    R  +A  LF  + A G  P
Sbjct: 563 GLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVP 622

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V TY  +   L   G      +LF  M   NG       P++   + +   L   G + 
Sbjct: 623 NVVTYRLVAENLIEEGSLEEFDSLFSAMEK-NG-----TAPNSQMLNALVRRLLHRGDIS 676

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           +A     K+ + N + +  T + LI  F      + AK L
Sbjct: 677 RAGAYLSKLDERNFSVEASTTSLLISIFTSDEYQHHAKSL 716



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 67/182 (36%), Gaps = 53/182 (29%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNE-------------------------------- 242
           ++A  LF E++      +VV FN I+N                                 
Sbjct: 31  DDALKLFDELLIHARPASVVAFNQILNAVSRASRASGRRSSSTSESELVVSLFNRMVREC 90

Query: 243 -----------------LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
                            LC+ G++  +     L+++ G R +  V N L+ G C   RV 
Sbjct: 91  SIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVG 150

Query: 286 RAKELFVS-MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR---PTVVTY 341
            A ++ +  M   GC  D  SY IL+ G+C     E AL L   M +   R   P VVTY
Sbjct: 151 EAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTY 210

Query: 342 NT 343
            T
Sbjct: 211 TT 212


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 119/381 (31%), Positives = 188/381 (49%), Gaps = 53/381 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF  M+ M   P     + ++ G L K    D   S F+R+   G  PD  TY +L++  
Sbjct: 109 IFHQMIDMKVKPDAFL-YTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSL 167

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K  +   G  +   +L    +P+ VT+ +++ G C   RI +A +L  +L+  G  P  
Sbjct: 168 FKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSG 227

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+TLI+GLC+      A  LFE MA G+ +       D I Y++   GLCK G +D+A
Sbjct: 228 SLYSTLIDGLCKHDRHDEARELFE-MAAGDVQ-------DVIVYTSFISGLCKAGKLDEA 279

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ------------ 230
           K + +KM +    PD V+Y  +I   C  N  +EAK    E+MDQ ++            
Sbjct: 280 KAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAK----ELMDQAMERKCMPGVPVCTV 335

Query: 231 ----------------------------PNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
                                       P+VVT++ +++ LCK  ++D+A  +L+ M + 
Sbjct: 336 LVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRA 395

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G  PD   Y  ++D FC  GR++ A+ELF  M   GC  DV +Y ILI GYC+  +++ A
Sbjct: 396 GCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEA 455

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           +++  EM  +GI+P VV+ +T
Sbjct: 456 IAMIEEMAGRGIQPNVVSLST 476



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 169/330 (51%), Gaps = 9/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L +    D  L +F ++  + + PD + Y ++I   CK+ ++      
Sbjct: 85  PTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASY 144

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+++S   PD VT+T L+  L    +  +   +F ++ + G  P++ TY T++NG C+
Sbjct: 145 FERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCK 204

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL+L   +  G G       P    YST+ DGLCK    D+A+ELF +M   ++
Sbjct: 205 AGRIDQALSLMRRL-KGTGR-----SPSGSLYSTLIDGLCKHDRHDEARELF-EMAAGDV 257

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             DV+ YTS I G C A   +EAK + ++M++ G  P+ V++NVI+  LCK+ ++ EA  
Sbjct: 258 Q-DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKE 316

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGY 313
           L++  ++    P   V   L+DG C + RV  A  +   M E+      V +Y  +I+G 
Sbjct: 317 LMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGL 376

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK   ++ A  +  +M   G  P VVTY  
Sbjct: 377 CKADRLDDAYVVLQKMRRAGCVPDVVTYTA 406



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 152/296 (51%), Gaps = 8/296 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G   + YT N L+  F   G     + V    L + F PD  T+ +LI+G C   +I +A
Sbjct: 12  GFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQA 71

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L  +++A G  P + T+ +LI  LC    T  AL +F +M +      +  KPDA  Y
Sbjct: 72  VNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMID------MKVKPDAFLY 125

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + +   LCK   +D A   F +M      PD VTYT L+     A  W +   +F EM+ 
Sbjct: 126 TVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLS 185

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G  P +VT+  ++N  CK G++D+A  L+  +   G  P  S+Y+TL+DG C   R + 
Sbjct: 186 KGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDE 245

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           A+ELF    + G ++DV  Y   I+G CK  +++ A +++ +M+  G  P  V+YN
Sbjct: 246 ARELFEM--AAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYN 299



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 164/330 (49%), Gaps = 9/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K +     ++L   + + G+ P + T+  LI   C++        +
Sbjct: 50  PDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQI 109

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     PDA  +T +I  LC  +++  AA+ F ++   GC PD  TYT L++ L +
Sbjct: 110 FHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFK 169

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                    +FEEM +          P+ +TY+T+ +G CK G +D+A  L  ++K    
Sbjct: 170 ACKWEQGHQIFEEMLSKGH------SPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGR 223

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P    Y++LI G C  +  +EA+ LF EM    VQ +V+ +   ++ LCK GK+DEA  
Sbjct: 224 SPSGSLYSTLIDGLCKHDRHDEARELF-EMAAGDVQ-DVIVYTSFISGLCKAGKLDEAKA 281

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   MI+ G  PD   YN ++   C   RV+ AKEL        CM  V    +L++G C
Sbjct: 282 VHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLC 341

Query: 315 KNKEIEGALSLYSEMLSKGIR-PTVVTYNT 343
           K++ +E A  +   ML  G R P+VVTY+ 
Sbjct: 342 KSRRVEEACVILERMLETGDRAPSVVTYSA 371



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 139/280 (49%), Gaps = 7/280 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    ++ L   L K+  +D    LF+   + G   D+  Y   I+  CK G++     V
Sbjct: 225 PSGSLYSTLIDGLCKHDRHDEARELFEM--AAGDVQDVIVYTSFISGLCKAGKLDEAKAV 282

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ +   PD V++  +I  LC ++R+ EA  L  +     C P V   T L++GLC+
Sbjct: 283 HVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCK 342

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A  + E M            P  +TYS + DGLCK   +D A  +  KM+    
Sbjct: 343 SRRVEEACVILERMLETGDR-----APSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGC 397

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTYT++I  FC     +EA+ LF  M ++G   +VV +N+++   C+  K+DEA  
Sbjct: 398 VPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIA 457

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           ++E M   G++P+    +T++DG C   RV  A+ L   M
Sbjct: 458 MIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G + + +T  +L+      G    A  +F++      E   + +PD  TY T+  G CK 
Sbjct: 12  GFQHNTYTCNSLLEVFVNDGCHREAYRVFKD------ELVTLFRPDDFTYGTLIRGFCKA 65

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
             + +A  L  +MK   I P +VT+ SLIR  C  N  ++A  +F +M+D  V+P+   +
Sbjct: 66  EQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLY 125

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            V++  LCK  K+D A+   E M+Q G  PD   Y  L+       +  +  ++F  M S
Sbjct: 126 TVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLS 185

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G   ++ +Y  ++NGYCK   I+ ALSL   +   G  P+   Y+T
Sbjct: 186 KGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYST 232



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 100/183 (54%), Gaps = 10/183 (5%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKMGRVSPGFVV 74
           PVC+  +L   L K++  +    + +R+   G   P + TY+ +I+  CK  R+   +VV
Sbjct: 331 PVCT--VLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVV 388

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ R+   PD VT+T++I   C   R+ EA  LF ++   GC  DV  Y  LI G CR
Sbjct: 389 LQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCR 448

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ + EEMA G G      +P+ ++ STI DGLCKE  V++A+ L  KM  E++
Sbjct: 449 AAKVDEAIAMIEEMA-GRG-----IQPNVVSLSTIVDGLCKESRVEEARLLMEKMNFESL 502

Query: 195 NPD 197
            PD
Sbjct: 503 -PD 504


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 172/306 (56%), Gaps = 11/306 (3%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           + +   + G   D++ YN L+  +C+ GR+     ++  +      PDA T+T +I+GLC
Sbjct: 96  VLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLC 152

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGV 157
              R+ +A AL   +   GC+P V TYT L+  +C++     A+N+ +EM A G      
Sbjct: 153 DRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKG------ 206

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
            C P+ +TY+ I +G+C+EG VD AKE+  ++      PD+V+YT++++G C A  W++ 
Sbjct: 207 -CTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDV 265

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           K LF EM+D+   PN VTF++++   C+ G ++ A ++L+ M Q G  P+ ++ N +++ 
Sbjct: 266 KVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINA 325

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  GRV+ A +   +M   GC  D  SY  ++ G C+    E A  L  EM+ K   P 
Sbjct: 326 ICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPN 385

Query: 338 VVTYNT 343
            VT+NT
Sbjct: 386 EVTFNT 391



 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 178/342 (52%), Gaps = 10/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             + D ML+     P V ++ +L   + K+  +   +++   + + G  P++ TYN++IN
Sbjct: 161 LALLDDMLQ-RGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIIN 219

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ GRV     +L R+    F PD V++T+++KGLCA  R  +   LF ++    C P
Sbjct: 220 GMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVP 279

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  T+  L+   CR G    A+ + ++M+         C P+    + + + +CK+G VD
Sbjct: 280 NEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG------CTPNTTLCNIVINAICKQGRVD 333

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A +    M     NPD ++YT+++RG C A  W  AK L  EM+ +   PN VTFN  +
Sbjct: 334 DAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFI 393

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LC+ G +++A +L+ELM + G       YN L+ GFC+ GRV+ A ELF ++    C 
Sbjct: 394 CILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CE 450

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  +Y  L+ G C  + ++ A  L + M+ K      VT+N
Sbjct: 451 PNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFN 492



 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 164/329 (49%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+  +   L   + +D V  LF  +      P+  T+++L+  FC+ G V     V
Sbjct: 244 PDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQV 303

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ +   TP+      +I  +C + R+ +A      +  +GC PD  +YTT++ GLCR
Sbjct: 304 LQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCR 363

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  EM   N      C P+ +T++T    LC++G +++A +L   M +   
Sbjct: 364 AGRWEHAKELLPEMVRKN------CPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGC 417

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +  +VTY +L+ GFC     + A  LF  +     +PN +T+  ++  LC   ++D A+ 
Sbjct: 418 SVGIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAE 474

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  MIQ     +A  +N L+  FC  G V  A EL   M  +GC  ++ ++  L++G  
Sbjct: 475 LLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGIT 534

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+   E AL L   ++SKG+    +TY++
Sbjct: 535 KDCNSEEALELLHGLVSKGVSLDTITYSS 563



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 160/336 (47%), Gaps = 9/336 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P + ++N++   + +    D    +  RL+S G  PD+ +Y  ++   C   R
Sbjct: 202 MRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARR 261

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                V+   ++     P+ VTF  L++  C    +  A  +  ++   GC P+      
Sbjct: 262 WDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNI 321

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +IN +C+ G    A +    M    G +G  C PD I+Y+T+  GLC+ G  + AKEL  
Sbjct: 322 VINAICKQGRVDDAYDFLNNM----GMYG--CNPDTISYTTVLRGLCRAGRWEHAKELLP 375

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M  +N  P+ VT+ + I   C      +A  L   M + G    +VT+N +++  C  G
Sbjct: 376 EMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQG 435

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           ++D A   LEL   +   P+   Y TL+ G C   R++ A EL   M    C  +  ++ 
Sbjct: 436 RVDSA---LELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFN 492

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +L++ +C+   +E A+ L ++M+  G  P ++T+NT
Sbjct: 493 VLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNT 528



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 123/259 (47%), Gaps = 9/259 (3%)

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
            PD    T LI+ LC   R  +AA +     A G   DVF Y TL+ G CR G    A  
Sbjct: 71  APDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARR 130

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L   M            PDA TY+ I  GLC  G V  A  L   M      P VVTYT 
Sbjct: 131 LIASMP---------VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTV 181

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+   C ++ + EA  +  EM  +G  PN+VT+NVI+N +C+ G++D+A  +L  +   G
Sbjct: 182 LLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYG 241

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            +PD   Y T++ G C   R +  K LF  M    C+ +  ++ +L+  +C+   +E A+
Sbjct: 242 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAI 301

Query: 324 SLYSEMLSKGIRPTVVTYN 342
            +  +M   G  P     N
Sbjct: 302 QVLQQMSQHGCTPNTTLCN 320



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 151/334 (45%), Gaps = 9/334 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +  H   P     NI+   + K    D        +   G  PD  +Y  ++   C+ GR
Sbjct: 307 MSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGR 366

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 +L  ++R    P+ VTF + I  LC +  I +A  L   +  +GC   + TY  
Sbjct: 367 WEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNA 426

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L++G C  G    AL LF  +          C+P+ ITY+T+  GLC    +D A EL  
Sbjct: 427 LVHGFCVQGRVDSALELFNNLP---------CEPNTITYTTLLTGLCHAERLDAAAELLA 477

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M  ++   + VT+  L+  FC      EA  L  +MM+ G  PN++TFN +++ + K+ 
Sbjct: 478 GMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDC 537

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
             +EA  LL  ++  GV  D   Y++++D      R   A ++  +++  G    V  Y 
Sbjct: 538 NSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYN 597

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++   CK  E + A+  ++ M+S G  P   TY
Sbjct: 598 KILFALCKRCETDQAIDFFAYMVSNGCMPNESTY 631



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 125/249 (50%), Gaps = 9/249 (3%)

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++ L A   + EAA L     + G  PDV+  T LI  LCR G T  A  +    A  +G
Sbjct: 46  LRRLIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVL-RTAEASG 104

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                   D   Y+T+  G C+ G +D A+ L   M    + PD  TYT +IRG C    
Sbjct: 105 -----APVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGR 156

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
             +A  L  +M+ +G QP+VVT+ V++  +CK+    EA  +L+ M   G  P+   YN 
Sbjct: 157 VGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNV 216

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           +++G C  GRV+ AKE+   + S G   D+ SY  ++ G C  +  +    L++EM+ K 
Sbjct: 217 IINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKK 276

Query: 334 IRPTVVTYN 342
             P  VT++
Sbjct: 277 CVPNEVTFD 285



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 136/287 (47%), Gaps = 9/287 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN     L +    +  + L + +   G    + TYN L++ FC  GRV     
Sbjct: 383 PPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALE 442

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +   C  P+ +T+T+L+ GLC   R+  AA L   +    C  +  T+  L++  C
Sbjct: 443 LFNNL--PC-EPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFC 499

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ L  +M     E G  C P+ IT++T+ DG+ K+   ++A EL   +  + 
Sbjct: 500 QKGFVEEAMELVNQMM----EHG--CTPNLITFNTLLDGITKDCNSEEALELLHGLVSKG 553

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           ++ D +TY+S++      +   EA  +   + D G++P V  +N I+  LCK  + D+A 
Sbjct: 554 VSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAI 613

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
                M+  G  P+ S Y  L++G    G +  A+ +   + + G +
Sbjct: 614 DFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVL 660


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 178/329 (54%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V  +NIL     K         +F  +   GL P   ++N LIN  CK   +  GF 
Sbjct: 220 PPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFR 279

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  +   PD  T++ LI GLC E R+  A  LF +++  G +P+  T+T LI+G  
Sbjct: 280 LKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQY 339

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R+     A+N + +M       GV  KPD + Y+T+ +GLCK G V+KA++L  +MK   
Sbjct: 340 RSRRMDSAMNTYHQMLT----MGV--KPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVG 393

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G+C   D   A  +   M ++GV  + V F  +++  C++G++ +A 
Sbjct: 394 MKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAE 453

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R L  M++ G++PD + Y  ++DG+C  G V    +L   M+ NG    V +Y +L+NG 
Sbjct: 454 RTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGL 513

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK  +++ A  L   ML+ G+ P  +TYN
Sbjct: 514 CKQGQMKNANMLLEAMLNLGVTPDDITYN 542



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 169/314 (53%), Gaps = 6/314 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   SFN L   L K+++ D    L K +    ++PD++TY++LI+  CK GR+     +
Sbjct: 256 PTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQL 315

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+ +TFT+LI G     R+  A   + ++   G KPD+  Y TL+NGLC+
Sbjct: 316 FDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCK 375

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L +EM        V  KPD ITY+T+ DG CKEG ++ A E+   M +E +
Sbjct: 376 VGDVNKARKLVDEMK------MVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGV 429

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V +T+LI GFC      +A+    EM++ G++P+  T+ ++++  CK G +    +
Sbjct: 430 VLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFK 489

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M   G +P    YN LM+G C  G++  A  L  +M + G   D  +Y IL+ G+C
Sbjct: 490 LLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHC 549

Query: 315 KNKEIEGALSLYSE 328
           KN + E  L L +E
Sbjct: 550 KNGKAEDLLKLRNE 563



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 100/183 (54%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P    Y+ + +  CKEG +  AK +F +++   + P  V++ +LI G C + + +E   L
Sbjct: 221 PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRL 280

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
              M +  + P+V T++V+++ LCK G++D A +L + M Q G+RP+   +  L+DG   
Sbjct: 281 KKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYR 340

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           + R++ A   +  M + G   D+  Y  L+NG CK  ++  A  L  EM   G++P  +T
Sbjct: 341 SRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKIT 400

Query: 341 YNT 343
           Y T
Sbjct: 401 YTT 403



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 9/201 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           ++M    P   ++  L     K    ++ + + K +N  G+  D   +  LI+ FC+ GR
Sbjct: 389 MKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGR 448

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V      L  ++ +   PD  T+T +I G C +  +     L  +++  G KP V TY  
Sbjct: 449 VRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNV 508

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L+NGLC+ G    A  L E M N     GV   PD ITY+ + +G CK G   KA++L  
Sbjct: 509 LMNGLCKQGQMKNANMLLEAMLN----LGVT--PDDITYNILLEGHCKNG---KAEDLLK 559

Query: 188 KMKDENINPDVVTYTSLIRGF 208
              ++ +  D   YTSL+  +
Sbjct: 560 LRNEKGLIVDYAYYTSLVSEY 580



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 85/165 (51%)

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           GFV  A + F  +++ N          L+     +N        + E+++ G  P V  +
Sbjct: 167 GFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYY 226

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N+++N+ CK G + +A  +   + + G+RP    +NTL++G C +  ++    L  +ME 
Sbjct: 227 NILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEE 286

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           N    DVF+Y +LI+G CK   ++ A  L+ EM  +G+RP  +T+
Sbjct: 287 NRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITF 331


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 171/325 (52%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+N L   LAK+   D V   +  +   G  P+ YTY  L+   C+  R      V   +
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                +P+  +++ LI GLC   ++ EAA L  ++   G +P+V TY +L++GLC+ G  
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A++LF  M          C PD + Y+ + DG  K+G + +A  LF +M ++   P V
Sbjct: 139 KEAVDLFSRMVYRG------CPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TY SL+ GF    ++   + LF +M+ QG  PN+ TFN +++  CK G M EA RL   
Sbjct: 193 FTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE 252

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M  +G  PD   YNTLM G C  G+ + A+ L   M  +G   D+ SY ILI+GY K+  
Sbjct: 253 MRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGA 312

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A+ L+ E+   G+ P   +Y+T
Sbjct: 313 LDHAIKLFYEIPKSGLEPDAFSYST 337



 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 171/326 (52%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   L + + ++   S+F+ + + G  P++++Y+ILI   C+  +V     +
Sbjct: 50  PNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAEL 109

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+ VT+ SL+ GLC   ++ EA  LF+++   GC PD   Y  LI+G  +
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  LFEEM          C P   TY+++  G  ++G   + + LF  M  +  
Sbjct: 170 KGDMGEAYRLFEEMLEKG------CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGC 223

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ T+ +L+ GFC   D  EA  LF+EM   G  P+VV++N +M  +C  GK  EA R
Sbjct: 224 VPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQR 283

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  MI+ GV PD   YN L+DG+  +G ++ A +LF  +  +G   D FSY  +I+  C
Sbjct: 284 LLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLC 343

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           +  ++  A  ++ +M++ G  P    
Sbjct: 344 RAGKVGAAFVVFKDMIANGSAPDAAV 369



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 161/324 (49%), Gaps = 6/324 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K       + LF R+   G  PD   YN+LI+ F K G +   + +
Sbjct: 120 PNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRL 179

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P   T+ SL+ G   +       +LF  +   GC P++FT+  L++G C+
Sbjct: 180 FEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  LF EM +      + C PD ++Y+T+  G+C +G   +A+ L  +M    +
Sbjct: 240 MGDMVEAHRLFLEMRS------LGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGV 293

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+V+Y  LI G+  +   + A  LF E+   G++P+  +++ I++ LC+ GK+  A  
Sbjct: 294 GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFV 353

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + MI  G  PDA+V   L+ G C   R+  + ELF +M    C+  +  Y +L+   C
Sbjct: 354 VFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLC 413

Query: 315 KNKEIEGALSLYSEMLSKGIRPTV 338
           K K  +    ++ E+  +G  P V
Sbjct: 414 KAKRSDDVCEIFHELTERGFSPDV 437



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 134/261 (51%), Gaps = 6/261 (2%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           +    +++  L++ L    R       +  +   GC P+ +TY  L+  LC+      A 
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
           ++F  MA         C P+  +YS +  GLC+   VD+A EL  +M D    P+VVTY 
Sbjct: 73  SVFRGMAAQG------CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYG 126

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           SL+ G C      EA  LF  M+ +G  P+ V +NV+++   K G M EA RL E M++ 
Sbjct: 127 SLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEK 186

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G  P    YN+L+ GF   G   R + LF  M   GC+ ++F++  L++G+CK  ++  A
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEA 246

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
             L+ EM S G  P VV+YNT
Sbjct: 247 HRLFLEMRSLGCPPDVVSYNT 267



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 142/309 (45%), Gaps = 6/309 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP    +N+L    +K         LF+ +   G  P ++TYN L++ F + G       
Sbjct: 154 PPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQS 213

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +LR    P+  TF +L+ G C    ++EA  LF ++R+ GC PDV +Y TL+ G+C
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMC 273

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A  L  EM            PD ++Y+ + DG  K G +D A +LF ++    
Sbjct: 274 SKGKPHEAQRLLREMIRSG------VGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSG 327

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  +Y+++I   C A     A  +F +M+  G  P+      ++  LC+  ++ E+ 
Sbjct: 328 LEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESC 387

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + M++    P    YN LM   C   R +   E+F  +   G   DV    +++   
Sbjct: 388 ELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL 447

Query: 314 CKNKEIEGA 322
            ++ + E A
Sbjct: 448 RRSDDKEAA 456


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 165/301 (54%), Gaps = 9/301 (2%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           L + G  PD+ TYN+LI  +CK G +     VL R+      PD VT+ ++++ LC   +
Sbjct: 168 LENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGK 224

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + EA  +  +     C PDV TYT LI   C       A+ L +EM          CKPD
Sbjct: 225 LKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKG------CKPD 278

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TY+ + +G+CKEG +D+A +    M      P+V+T+  ++R  C    W +A+ L  
Sbjct: 279 VVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLA 338

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           +M+ +G  P+VVTFN+++N LC+   +  A  +LE M + G  P++  YN L+ GFC   
Sbjct: 339 DMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEK 398

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +++RA E    M S GC  D+ +Y  L+   CK+ + + A+ + +++ SKG  P ++TYN
Sbjct: 399 KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYN 458

Query: 343 T 343
           T
Sbjct: 459 T 459



 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 172/330 (52%), Gaps = 11/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L G   K+   D  L + +R++   + PD+ TYN ++   C  G++     V
Sbjct: 175 PDVITYNVLIGGYCKSGEIDKALQVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEV 231

Query: 75  LGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L R + R C+ PD +T+T LI+  C +S + +A  L  ++R  GCKPDV TY  LING+C
Sbjct: 232 LDRQMQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 290

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+     M      +G  C+P+ IT++ I   +C  G    A+ L   M  + 
Sbjct: 291 KEGRLDEAIKFLNNMP----LYG--CQPNVITHNIILRSMCSTGRWMDAERLLADMLRKG 344

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +P VVT+  LI   C       A  +  +M   G  PN +++N +++  C+  KMD A 
Sbjct: 345 CSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAI 404

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             LE+M+  G  PD   YNTL+   C  G+ + A E+   + S GC   + +Y  +I+G 
Sbjct: 405 EYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGL 464

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K  + E A  L  EM  KG++P ++TY+T
Sbjct: 465 TKVGKTEYAAELLEEMRRKGLKPDIITYST 494



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 162/327 (49%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL      +      + L   +   G  PD+ TYN+LIN  CK GR+      
Sbjct: 242 PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKF 301

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ +T   +++ +C+  R M+A  L   +   GC P V T+  LIN LCR
Sbjct: 302 LNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCR 361

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+++ E+M          C P++++Y+ +  G C+E  +D+A E    M     
Sbjct: 362 KRLLGRAIDVLEKMPKHG------CMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGC 415

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY +L+   C     + A  +  ++  +G  P ++T+N +++ L K GK + A+ 
Sbjct: 416 YPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAE 475

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE M + G++PD   Y+TL+ G    G+V+ A ++F  ME         +Y  ++ G C
Sbjct: 476 LLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLC 535

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K ++   A+   + M+ KG +PT  TY
Sbjct: 536 KAQQTSRAIDFLAYMVEKGCKPTKATY 562



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 155/326 (47%), Gaps = 44/326 (13%)

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
           +  NI +    + G +  G   L R++     PD +  TSLI+G C   +  +A  +   
Sbjct: 108 FASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEI 167

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           L   G  PDV TY  LI G C++G    AL + E M+           PD +TY+TI   
Sbjct: 168 LENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMS---------VAPDVVTYNTILRS 218

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           LC  G + +A E+  +       PDV+TYT LI   C  +   +A  L  EM  +G +P+
Sbjct: 219 LCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPD 278

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR--------- 283
           VVT+NV++N +CK G++DEA + L  M   G +P+   +N ++   C TGR         
Sbjct: 279 VVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLA 338

Query: 284 --------------------------VNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
                                     + RA ++   M  +GCM +  SY  L++G+C+ K
Sbjct: 339 DMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEK 398

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
           +++ A+     M+S+G  P +VTYNT
Sbjct: 399 KMDRAIEYLEIMVSRGCYPDIVTYNT 424



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 6/305 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P V ++N+L   + K    D  +     +   G  P++ T+NI++   C  GR
Sbjct: 270 MRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGR 329

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 +L  +LR   +P  VTF  LI  LC +  +  A  +  K+   GC P+  +Y  
Sbjct: 330 WMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNP 389

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L++G C+      A+   E M +        C PD +TY+T+   LCK+G  D A E+  
Sbjct: 390 LLHGFCQEKKMDRAIEYLEIMVSRG------CYPDIVTYNTLLTALCKDGKADAAVEILN 443

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++  +  +P ++TY ++I G         A  L  EM  +G++P+++T++ ++  L   G
Sbjct: 444 QLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEG 503

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+DEA ++   M  + ++P A  YN +M G C   + +RA +    M   GC     +Y 
Sbjct: 504 KVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYT 563

Query: 308 ILING 312
           ILI G
Sbjct: 564 ILIEG 568



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 134/264 (50%), Gaps = 6/264 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + NI+   +     +     L   +   G  P + T+NILIN  C+   +     V
Sbjct: 312 PNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDV 371

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ +    P+++++  L+ G C E ++  A      + + GC PD+ TY TL+  LC+
Sbjct: 372 LEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCK 431

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ +  ++++        C P  ITY+T+ DGL K G  + A EL  +M+ + +
Sbjct: 432 DGKADAAVEILNQLSSKG------CSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGL 485

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY++L+RG       +EA  +F +M    ++P+ VT+N IM  LCK  +   A  
Sbjct: 486 KPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAID 545

Query: 255 LLELMIQIGVRPDASVYNTLMDGF 278
            L  M++ G +P  + Y  L++G 
Sbjct: 546 FLAYMVEKGCKPTKATYTILIEGI 569


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 175/326 (53%), Gaps = 12/326 (3%)

Query: 18  CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           C+ N+L     +   +   + LF+    +   P+ +TY  LI+  CK G++   + +L  
Sbjct: 3   CALNLLV----RAGQHGQAVQLFREERCV---PNEFTYGSLIHGLCKAGKLDQAYELLDE 55

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           +      P       +IKGLC   R  +A   F  +    C PD+ T+  L++ L ++G 
Sbjct: 56  MRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A  +FE M   +      C P+ +TY+T+ +GLCK+G +D+A EL   M +    P+
Sbjct: 116 VEEAFQIFESMHTSSQ-----CLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPN 170

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V+TY+ L+ G C A   ++   L  EM  +G QP+V+ +N ++N LCK+ ++DEA  L++
Sbjct: 171 VITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQ 230

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
           LMI+ G  P    YN+LM+ FC + +V+RA  L   M   GC  DV +Y  +I G C++ 
Sbjct: 231 LMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDA 290

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++ A +L  +M++    P V+TY+T
Sbjct: 291 RLDDAQALLKQMVAARCVPDVITYST 316



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 178/349 (51%), Gaps = 13/349 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F IF+ M       P V ++  +   L K+   D  + L   +N  G  P++ TY++L+ 
Sbjct: 120 FQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVE 179

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK GR   GF +L  + R  F PD + + +L+ GLC   R+ EA  L   +   GC P
Sbjct: 180 GLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYP 239

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            V TY +L+   CR+     A  L + M+    E G  C PD I Y+T+  GLC++  +D
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLIQVMS----ERG--CPPDVINYNTVIAGLCRDARLD 293

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFC----YANDWN-EAKCLFIEMMDQ-GVQPNVV 234
            A+ L  +M      PDV+TY+++I G C       DW  EA C  +EMM Q G  PN  
Sbjct: 294 DAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAG 353

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+ V++  LC+  K  +A  LL  MI   V PD S ++ ++   C +  ++ A ++F  M
Sbjct: 354 TYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMM 413

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               C  +  +Y  LI+G  K  E++ A+ ++ E++ +  RP V TYN+
Sbjct: 414 SERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNS 461



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 11/334 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   L K++  D  L L + +   G +P + TYN L+  FC+  +V   F +
Sbjct: 204 PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRL 263

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PD + + ++I GLC ++R+ +A AL  ++ A  C PDV TY+T+I+GLC+
Sbjct: 264 IQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCK 323

Query: 135 TGHTIVALNL-----FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
                    L       EM    G     C P+A TY+ + +GLC+     +A  L  +M
Sbjct: 324 DWRVDADWKLEAACEILEMMKQTG-----CPPNAGTYAVVIEGLCRARKSQQALALLRRM 378

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            D  + PD+ +++ +I   C ++D + A  +F  M ++  +PN V +  +++ L K G++
Sbjct: 379 IDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEV 438

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+A R+ ELM++   RP  + YN+++DG C  GR+  A  +   M    C  D  SYG L
Sbjct: 439 DKAVRVFELMVE-SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGAL 497

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I G C+   +E A  L+  + +KG    V  YN 
Sbjct: 498 IRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNV 531



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 175/343 (51%), Gaps = 15/343 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    PP V   N +   L K   +   L  FK +      PD+ T+NIL++   K GR
Sbjct: 56  MRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115

Query: 68  VSPGFVVLGRILRS--CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           V   F +   +  S  C  P+ VT+T++I GLC + ++  A  L   +   GC P+V TY
Sbjct: 116 VEEAFQIFESMHTSSQCL-PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITY 174

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           + L+ GLC+ G T     L +EM           +PD I Y+T+ +GLCK   +D+A EL
Sbjct: 175 SVLVEGLCKAGRTDKGFTLLQEMTRRG------FQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
              M      P VVTY SL+  FC +   + A  L   M ++G  P+V+ +N ++  LC+
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN------RAKELFVSMESNGC 299
           + ++D+A  LL+ M+     PD   Y+T++DG C   RV+       A E+   M+  GC
Sbjct: 289 DARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +  +Y ++I G C+ ++ + AL+L   M+   + P + +++
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFS 391



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 164/342 (47%), Gaps = 13/342 (3%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R     P   ++  L   L K    D    L   +   G+ P +  +N +I   CK G
Sbjct: 20  LFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAG 79

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR-AFGCKPDVFTY 125
           R          +  +  TPD +TF  L+  L    R+ EA  +F  +  +  C P+V TY
Sbjct: 80  RFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTY 139

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           TT+INGLC+ G    A+ L + M N  G     C P+ ITYS + +GLCK G  DK   L
Sbjct: 140 TTVINGLCKDGKLDRAIELLDLM-NETG-----CCPNVITYSVLVEGLCKAGRTDKGFTL 193

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             +M      PDV+ Y +L+ G C +   +EA  L   M+  G  P VVT+N +M   C+
Sbjct: 194 LQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR 253

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           + ++D A RL+++M + G  PD   YNT++ G C   R++ A+ L   M +  C+ DV +
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT 313

Query: 306 YGILINGYCKNKEI------EGALSLYSEMLSKGIRPTVVTY 341
           Y  +I+G CK+  +      E A  +   M   G  P   TY
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355


>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
          Length = 458

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 180/361 (49%), Gaps = 37/361 (10%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILINCFCKMGRVSPGFVVL 75
           SFN     +A++     V SLF R+   G   + PDL TY+ILI C C+ GR+  GF  L
Sbjct: 60  SFNRTLTDVARDSPAAAV-SLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAAL 118

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGCKPDVFTYTTLINGLCR 134
           G +++  F  +A+TF  L+KGLCA+ R  +A  +   ++    C PDVF+ T L+ GLC 
Sbjct: 119 GNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCD 178

Query: 135 TGHTIVALNLFEEMANGNGE--------------------------------FGVVCKPD 162
              +  AL L   MA+  G                                  G    P+
Sbjct: 179 ENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPN 238

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TYS+I   LCK   +DKA E+   M    + PD +TY+S++ G+C +    E      
Sbjct: 239 VVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLN 298

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           +M   GV+PNVVT+  +MN LCKNG+  +A ++ + M + G+ PD + Y TL+ G+   G
Sbjct: 299 KMRSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKG 358

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +     L   M  NG   D   + ILI  Y K ++++ A+ ++S+M   G+ P VV Y 
Sbjct: 359 ALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYG 418

Query: 343 T 343
           T
Sbjct: 419 T 419



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 122/255 (47%), Gaps = 6/255 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SPP V S+  +     K    D   S +  +    + P++ TY+ +I   CK   +    
Sbjct: 200 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKAQAMDKAM 259

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            VL  ++++   PD +T++S++ G C+  +  E      K+R+ G +P+V TY +L+N L
Sbjct: 260 EVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDGVEPNVVTYRSLMNYL 319

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A  +F+ M     E      PD  TY T+  G   +G + +   L   M   
Sbjct: 320 CKNGRCTKARKIFDSMTKRGLE------PDIATYRTLLQGYATKGALVEMHALLDLMVRN 373

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            I PD   +  LI  +      ++A  +F +M   G+ PNVV +  +++ LCK+G +D+A
Sbjct: 374 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 433

Query: 253 SRLLELMIQIGVRPD 267
               E MI  G+ P+
Sbjct: 434 MLYFEQMIDEGLTPN 448



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 29/220 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K +  D  + +   +   G+ PD  TY+ +++ +C  G+       
Sbjct: 237 PNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGT 296

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      P+ VT+ SL+  LC   R  +A  +F  +   G +PD+ TY TL+ G   
Sbjct: 297 LNKMRSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYAT 356

Query: 135 TG-----HTIVALNLFEEMANGNGEFGV-VC-----------------------KPDAIT 165
            G     H ++ L +   +   +  F + +C                        P+ + 
Sbjct: 357 KGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVC 416

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
           Y T+ D LCK G VD A   F +M DE + P+++   S +
Sbjct: 417 YGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIILSVSSV 456


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 175/333 (52%), Gaps = 11/333 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K +  D  + +   +   G+ P+  TY  +++ +C  G+       
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGF 288

Query: 75  LGRILRSCFTPDAV-----TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
           L ++      PD +     T+ +L++G   +  ++   AL   +   G  PD + Y  LI
Sbjct: 289 LKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILI 348

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
               + G    A+ +F +M            PDA+TY  +   LCK G V+ A   F +M
Sbjct: 349 CAYAKQGKVDEAMLVFSKMRQQG------LNPDAVTYGAVIGILCKSGRVEDAMLYFEQM 402

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            DE ++P  + Y SLI G C  N W  A+ L +EM+D+G+  N + FN I++  CK G++
Sbjct: 403 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 462

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            E+ +L +LM++IGV+PD   Y+TL+DG+CL G+++ A +L   M S G   +  +Y  L
Sbjct: 463 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTL 522

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           INGYCK   +  AL L+ EM S G+ P ++TYN
Sbjct: 523 INGYCKISRMGDALVLFKEMESSGVSPDIITYN 555



 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 179/350 (51%), Gaps = 14/350 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P ++TY ILI
Sbjct: 37  VFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHTYAILI 94

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
            C C+  R+  GF  LG +++  F  +A+TFT L+KGLCA+ R  +A  +   ++    C
Sbjct: 95  GCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSC 154

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            PDVF+ T L+ GLC    +  AL L   MA+G G       PD ++Y+T+ +G  KEG 
Sbjct: 155 MPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSA---PDVVSYTTVINGFFKEGD 211

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
             KA   + +M D  I+PDVVTY+S+I   C     ++A  +   M+  GV PN  T+  
Sbjct: 212 SGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTS 271

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDA-----SVYNTLMDGFCLTGRVNRAKELFVS 293
           IM+  C +G+  EA   L+ +   GV PD      + Y TL+ G+   G +     L   
Sbjct: 272 IMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDL 331

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M  NG   D + Y ILI  Y K  +++ A+ ++S+M  +G+ P  VTY  
Sbjct: 332 MVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGA 381



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 169/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L    A       + +L   +   G+ PD Y YNILI  + K G+V    +V
Sbjct: 304 PDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLV 363

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++ +    PDAVT+ ++I  LC   R+ +A   F ++   G  P    Y +LI+GLC 
Sbjct: 364 FSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCT 423

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L  EM +       +C  + I +++I D  CKEG V ++++LF  M    +
Sbjct: 424 CNKWERAEELILEMLDRG-----IC-LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGV 477

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY++LI G+C A   +EA  L   M+  G++PN VT+  ++N  CK  +M +A  
Sbjct: 478 KPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALV 537

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M   GV PD   YN ++ G   T R   AKEL+V +  +G   ++ +Y I+++G C
Sbjct: 538 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 597

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           KNK  + AL ++  +    ++    T+N
Sbjct: 598 KNKLTDDALRMFQNLCLMDLKLEARTFN 625



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 171/369 (46%), Gaps = 46/369 (12%)

Query: 2   CIFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
            + D M+R  +HP       +NIL    AK    D  + +F ++   GL PD  TY  +I
Sbjct: 327 ALLDLMVRNGIHPDH---YVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVI 383

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA-------------------- 99
              CK GRV    +   +++    +P  + + SLI GLC                     
Sbjct: 384 GILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 443

Query: 100 ---------------ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
                          E R++E+  LF  +   G KPD+ TY+TLI+G C  G    A+ L
Sbjct: 444 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKL 503

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
              M +      V  KP+ +TY T+ +G CK   +  A  LF +M+   ++PD++TY  +
Sbjct: 504 LSGMVS------VGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNII 557

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           ++G         AK L++ + + G Q  + T+N+I++ LCKN   D+A R+ + +  + +
Sbjct: 558 LQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDL 617

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
           + +A  +N ++D     GR   AK+LFV+  SNG + + ++Y ++         +E    
Sbjct: 618 KLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQ 677

Query: 325 LYSEMLSKG 333
           L+  M   G
Sbjct: 678 LFLSMEDNG 686



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 130/275 (47%), Gaps = 9/275 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +FD M+R+   P  +    ++ G CLA     D  + L   + S+GL P+  TY  LIN 
Sbjct: 468 LFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEAMKLLSGMVSVGLKPNTVTYRTLING 525

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +CK+ R+    V+   +  S  +PD +T+  +++GL    R   A  L+ ++   G + +
Sbjct: 526 YCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIE 585

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY  +++GLC+   T  AL +F+ +   +       K +A T++ + D L K G   +
Sbjct: 586 LSTYNIILHGLCKNKLTDDALRMFQNLCLMD------LKLEARTFNIMIDALLKVGRNGE 639

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK+LF+      + P+  TY  +           E   LF+ M D G   +    N I+ 
Sbjct: 640 AKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 699

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           EL + G++  A   L ++ +     +AS  +  +D
Sbjct: 700 ELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 734


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  204 bits (518), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 26/355 (7%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FDYM+R  P    V   N + G   +    D  +SL++++    +  ++Y++NILI CFC
Sbjct: 94  FDYMVRSRPFYTAV-DCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFC 152

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI---------------MEAAA 108
              ++S      G++ +  F PD VTF +L+ GLC E RI               +EA A
Sbjct: 153 DCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVA 212

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           LF ++   G  P V T+ TLINGLC  G  + A  L  +M  G G        D +TY T
Sbjct: 213 LFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV-GKG-----LHIDVVTYGT 266

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           I +G+CK G    A  L  KM++ +I PDVV Y+++I   C     ++A+ LF EM+++G
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG 326

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           + PNV T+N +++  C  G+  +A RLL  MI+  + PD   +N L+      G++  A+
Sbjct: 327 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAE 386

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +L   M       D  +Y  +I G+CK+   + A  ++  M S    P VVT+NT
Sbjct: 387 KLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNT 437



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 170/329 (51%), Gaps = 10/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+ H+     LF  +   G+ P+++TYN +I+ FC  GR S    +
Sbjct: 294 PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 353

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD +TF +LI     E ++ EA  L  ++      PD  TY ++I G C+
Sbjct: 354 LRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK 413

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F+ MA+          PD +T++TI D  C+   VD+  +L  ++    +
Sbjct: 414 HNRFDDAKHMFDLMAS----------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 463

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +  TY +LI GFC  ++ N A+ LF EM+  GV P+ +T N+++   C+N K++EA  
Sbjct: 464 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 523

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E++    +  D   YN ++ G C   +V+ A +LF S+  +G   DV +Y ++I+G+C
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 583

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               I  A  L+ +M   G  P   TYNT
Sbjct: 584 GKSAISDANVLFHKMKDNGHEPDNSTYNT 612



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L     K         L   +    +FPD  TYN +I  FCK  R    F  
Sbjct: 364 PDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR----FDD 419

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +PD VTF ++I   C   R+ E   L  ++   G   +  TY TLI+G C 
Sbjct: 420 AKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCE 479

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A +LF+EM +       VC PD IT + +  G C+   +++A ELF  ++   I
Sbjct: 480 VDNLNAAQDLFQEMISHG-----VC-PDTITCNILLYGFCENEKLEEALELFEVIQMSKI 533

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + D V Y  +I G C  +  +EA  LF  +   GV+P+V T+NV+++  C    + +A+ 
Sbjct: 534 DLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANV 593

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           L   M   G  PD S YNTL+ G    G ++++ EL   M SNG   D F+
Sbjct: 594 LFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 644



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 129/273 (47%), Gaps = 11/273 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K+  +D    +F  + S    PD+ T+N +I+ +C+  RV  G  +
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQL 454

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  I R     +  T+ +LI G C    +  A  LF ++ + G  PD  T   L+ G C 
Sbjct: 455 LREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCE 514

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL LFE +     +       D + Y+ I  G+CK   VD+A +LF  +    +
Sbjct: 515 NEKLEEALELFEVIQMSKIDL------DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGV 568

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TY  +I GFC  +  ++A  LF +M D G +P+  T+N ++    K G++D++  
Sbjct: 569 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIE 628

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           L+  M   G   DA     + D     GR++++
Sbjct: 629 LISEMRSNGFSGDAFTIKMVAD-LITDGRLDKS 660



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   + NIL     +N+  +  L LF+ +    +  D   YNI+I+  CK  +V  
Sbjct: 496 HGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDE 555

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            + +   +      PD  T+  +I G C +S I +A  LF K++  G +PD  TY TLI 
Sbjct: 556 AWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 615

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           G  + G    ++ L  EM   NG  G     DA T   + D L  +G +DK+
Sbjct: 616 GCLKAGEIDKSIELISEM-RSNGFSG-----DAFTIKMVAD-LITDGRLDKS 660


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  204 bits (518), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 180/329 (54%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN +   L K++ +D    +F+ ++   + PD+ ++NILI  FC++G V      
Sbjct: 225 PGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKF 284

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +   TPD V+F+ LI       ++  AAA   +++  G  PD   YT +I G CR
Sbjct: 285 YKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCR 344

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL + +EM       G+ C PD +TY+T+ +GLCK+  +  A+EL  +MK+  +
Sbjct: 345 AGSMSEALRVRDEMV------GLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGV 398

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ T+T+LI G+C   ++ +A  LF  ++ Q ++P+VV +N +++ +C+ G + +A+ 
Sbjct: 399 TPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANE 458

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M    + P+   Y+ L+D  C  G+V  A      M S G + ++ +Y  +I GYC
Sbjct: 459 LWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYC 518

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  ++       +M+   I P ++T+NT
Sbjct: 519 RSGNVKKGQQFLQKMMQDNILPDLITFNT 547



 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 177/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFNIL G   +    +  +  +K +   G+ PD+ +++ LI  F   G++      
Sbjct: 260 PDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAY 319

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD V +T +I G C    + EA  +  ++   GC PDV TY TL+NGLC+
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCK 379

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A  L  EM     E GV   PD  T++T+  G C++G  +KA +LF  +  + +
Sbjct: 380 QHRLLDAEELLNEMK----ERGVT--PDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRL 433

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV Y SLI G C   D  +A  L+ +M  + + PN VT++++++  C+ G+++EA  
Sbjct: 434 RPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFG 493

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ M+  G  P+   YN+++ G+C +G V + ++    M  +  + D+ ++  LI+GY 
Sbjct: 494 FLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYI 553

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K + + GA ++++ M  + ++P  VTYN
Sbjct: 554 KEENMHGAFNVFNIMEKEMVQPDAVTYN 581



 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 174/327 (53%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SF+ L G  +     D   +  + +  +GL PD   Y ++I  FC+ G +S    V
Sbjct: 295 PDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD VT+ +L+ GLC + R+++A  L  +++  G  PD+ T+TTLI+G CR
Sbjct: 355 RDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCR 414

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL LF+ + +         +PD + Y+++ DG+C++G + KA EL+  M    I
Sbjct: 415 DGNFEKALQLFDTLLHQR------LRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREI 468

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY+ LI   C      EA     EM+ +G  PN++T+N I+   C++G + +  +
Sbjct: 469 FPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQ 528

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ M+Q  + PD   +NTL+ G+     ++ A  +F  ME      D  +Y ++ING+ 
Sbjct: 529 FLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFS 588

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +   +E A  ++ +M + GI P   TY
Sbjct: 589 EQGNMEEAGRVFKKMGASGIEPDRYTY 615



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 140/289 (48%), Gaps = 8/289 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K         L   +   G+ PDL T+  LI+ +C+ G       +
Sbjct: 365 PDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQL 424

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     PD V + SLI G+C +  + +A  L+  + A    P+  TY+ LI+  C 
Sbjct: 425 FDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCE 484

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G    A    +EM + GN        P+ +TY++I  G C+ G V K ++   KM  +N
Sbjct: 485 KGQVEEAFGFLDEMVSKGN-------LPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDN 537

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I PD++T+ +LI G+    + + A  +F  M  + VQP+ VT+N+I+N   + G M+EA 
Sbjct: 538 ILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAG 597

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           R+ + M   G+ PD   Y +L++G    G    A +L   M   G   D
Sbjct: 598 RVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 135/266 (50%), Gaps = 6/266 (2%)

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           +L S    +A T   ++   C      +A  + +++      PDV T+  LI+   R G 
Sbjct: 148 VLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGD 207

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A+ L + MAN         KP  +T++++  GLCK    DKAKE+F  M   ++ PD
Sbjct: 208 VDAAIALVDSMANKG------LKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPD 261

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V ++  LI GFC   +  EA   + EM  +GV P+VV+F+ ++      GKMD A+  L 
Sbjct: 262 VRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLR 321

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M  +G+ PD  +Y  ++ GFC  G ++ A  +   M   GC+ DV +Y  L+NG CK  
Sbjct: 322 EMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQH 381

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  A  L +EM  +G+ P + T+ T
Sbjct: 382 RLLDAEELLNEMKERGVTPDLCTFTT 407



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 72/161 (44%)

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +E+   +   +  P    +  LIR +  +    EA   F  ++D  V       N ++  
Sbjct: 72  REIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAA 131

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L + G    A     L++      +A   N ++  +C +   ++A  +   ME      D
Sbjct: 132 LSRAGWPHLAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPD 191

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V ++ +LI+   +  +++ A++L   M +KG++P +VT+N+
Sbjct: 192 VVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNS 232


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 176/334 (52%), Gaps = 9/334 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           +P  V ++ IL  C  + +  D   + F RL   GL       N  + C C   R     
Sbjct: 152 APLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAV 211

Query: 73  -VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLI 129
            V+L R+      P+A+++ ++IK LC +SR  EA  +  ++   G  C PDV ++ T+I
Sbjct: 212 DVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVI 271

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           +G  + G    A NL  EM     E      PD +TY++I D LCK   +DKA+ +  +M
Sbjct: 272 HGFFKQGEVSKACNLINEMVQKGVE------PDVVTYNSIVDALCKARAMDKAELVLRQM 325

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            D+ + PD +TYT++I G+  +  W E+  +F +M  +G+ P +VTFN  M+ LCK+G+ 
Sbjct: 326 VDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRS 385

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +A  + + M   G  PD   Y+ L+ G+   GR      LF SM   G + +   + IL
Sbjct: 386 KDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNIL 445

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+ + K   ++ A+ +++EM  +G+RP VVTY+T
Sbjct: 446 ISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYST 479



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 172/332 (51%), Gaps = 9/332 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSPGF 72
           P   S+N +   L  +      L + +R+   G    PD+ ++N +I+ F K G VS   
Sbjct: 225 PNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKAC 284

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            ++  +++    PD VT+ S++  LC    + +A  +  ++   G +PD  TYT +I+G 
Sbjct: 285 NLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGY 344

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
             +GH   +  +F +M +     G++  P  +T+++    LCK G    A+E+F  M  +
Sbjct: 345 SCSGHWKESAKMFRKMTSK----GLI--PGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTK 398

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              PD+V+Y+ L+ G+     + +   LF  M D+G+  N   FN++++   K G MDEA
Sbjct: 399 GHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEA 458

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             +   M   GVRPD   Y+TL+  FC  GR+  A E F  M S G   +   Y  LI+G
Sbjct: 459 MLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHG 518

Query: 313 YCKNKEIEGALSLYSEMLSKGI-RPTVVTYNT 343
           +C + ++  A  L SEM+SKGI RP +V +++
Sbjct: 519 FCMHGDLVKAKELVSEMMSKGIPRPNIVFFSS 550



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 174/341 (51%), Gaps = 6/341 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF YM       P + S++IL    A    +  + +LF  +   G+  + + +NILI+  
Sbjct: 391 IFQYMT-TKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAH 449

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G +    +V   +      PD VT+++LI   C   R+ +A   F+++ + G +P+ 
Sbjct: 450 AKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNT 509

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y +LI+G C  G  + A  L  EM +       + +P+ + +S+I   LC EG V  A
Sbjct: 510 VVYHSLIHGFCMHGDLVKAKELVSEMMSKG-----IPRPNIVFFSSIIHSLCNEGRVMDA 564

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++F  +      P +VT+ SLI G+C      +A  +   M+  G++P+VVT+N +++ 
Sbjct: 565 HDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSG 624

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK+GK+D+   L   M+   V+P    Y+ ++DG    GR + AK++F  M  +G   D
Sbjct: 625 YCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVD 684

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y IL+ G C+N   + A++L+ ++ +   +  +   NT
Sbjct: 685 IDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNT 725



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 175/354 (49%), Gaps = 42/354 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP--------- 70
           FNIL    AK    D  + +F  +   G+ PD+ TY+ LI+ FC+MGR++          
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501

Query: 71  ----------------GFVVLGRILRS-----------CFTPDAVTFTSLIKGLCAESRI 103
                           GF + G ++++              P+ V F+S+I  LC E R+
Sbjct: 502 SIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRV 561

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
           M+A  +F  +   G +P + T+ +LI+G C  G    A  + + M +      V  +PD 
Sbjct: 562 MDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVS------VGIEPDV 615

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY+T+  G CK G +D    LF +M  + + P  VTY+ ++ G  +A   + AK +F E
Sbjct: 616 VTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHE 675

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+D G   ++ T+ +++  LC+N   DEA  L   +  +  + D ++ NT+++      R
Sbjct: 676 MIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRR 735

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
              A +LF ++ ++G + +V +YG++I+   K   +E A +++S M   G  P+
Sbjct: 736 REEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPS 789



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 123/273 (45%), Gaps = 6/273 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  F+ +   L           +F  +  IG  P + T+N LI+ +C +G++   F V
Sbjct: 543 PNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGV 602

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD VT+ +L+ G C   +I +   LF ++     KP   TY+ +++GL  
Sbjct: 603 LDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFH 662

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A  +F EM +           D  TY  +  GLC+    D+A  LF K+   + 
Sbjct: 663 AGRTSAAKKMFHEMIDSGTAV------DIDTYKILLKGLCRNDLTDEAITLFHKLGAMDC 716

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D+    ++I          EA  LF  +   G+ PNV T+ V+++ L K G ++EA  
Sbjct: 717 KFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADT 776

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           +   M + G  P + + N ++      G + +A
Sbjct: 777 MFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKA 809



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 120/269 (44%), Gaps = 6/269 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L          +    +   + S+G+ PD+ TYN L++ +CK G++  G ++
Sbjct: 578 PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLIL 637

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P  VT++ ++ GL    R   A  +F ++   G   D+ TY  L+ GLCR
Sbjct: 638 FREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR 697

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
              T  A+ LF ++        + CK D    +T+ + L K    ++A +LF  +    +
Sbjct: 698 NDLTDEAITLFHKLG------AMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGL 751

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY  +I          EA  +F  M   G  P+    N I+  L + G + +A  
Sbjct: 752 VPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGY 811

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGR 283
            +  +    +  +AS  + LM  F   G+
Sbjct: 812 YMSKVDGTIISLEASTTSLLMSLFSSKGK 840


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 120/350 (34%), Positives = 183/350 (52%), Gaps = 21/350 (6%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FDYM+R  P    V   N + G   +    D  +SL++++    +  ++Y++NILI CFC
Sbjct: 94  FDYMVRSRPFYTAV-DCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFC 152

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF----------TKL 113
              ++S      G++ +  F PD VTF +L+ GLC E RI EA ALF           ++
Sbjct: 153 DCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQM 212

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              G  P V T+ TLINGLC  G  + A  L  +M  G G        D +TY TI +G+
Sbjct: 213 VEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV-GKG-----LHIDVVTYGTIVNGM 266

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK G    A  L  KM++ +I PDVV Y+++I   C     ++A+ LF EM+++G+ PNV
Sbjct: 267 CKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNV 326

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T+N +++  C  G+  +A RLL  MI+  + PD   +N L+      G++  A++L   
Sbjct: 327 FTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDE 386

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M       D  +Y  +I G+CK+   + A  ++  M S    P VVT+NT
Sbjct: 387 MLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNT 432



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 170/329 (51%), Gaps = 10/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+ H+     LF  +   G+ P+++TYN +I+ FC  GR S    +
Sbjct: 289 PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 348

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD +TF +LI     E ++ EA  L  ++      PD  TY ++I G C+
Sbjct: 349 LRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK 408

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F+ MA+          PD +T++TI D  C+   VD+  +L  ++    +
Sbjct: 409 HNRFDDAKHMFDLMAS----------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 458

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +  TY +LI GFC  ++ N A+ LF EM+  GV P+ +T N+++   C+N K++EA  
Sbjct: 459 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 518

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E++    +  D   YN ++ G C   +V+ A +LF S+  +G   DV +Y ++I+G+C
Sbjct: 519 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 578

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               I  A  L+ +M   G  P   TYNT
Sbjct: 579 GKSAISDANVLFHKMKDNGHEPDNSTYNT 607



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L     K         L   +    +FPD  TYN +I  FCK  R    F  
Sbjct: 359 PDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR----FDD 414

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +PD VTF ++I   C   R+ E   L  ++   G   +  TY TLI+G C 
Sbjct: 415 AKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCE 474

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A +LF+EM +       VC PD IT + +  G C+   +++A ELF  ++   I
Sbjct: 475 VDNLNAAQDLFQEMISHG-----VC-PDTITCNILLYGFCENEKLEEALELFEVIQMSKI 528

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + D V Y  +I G C  +  +EA  LF  +   GV+P+V T+NV+++  C    + +A+ 
Sbjct: 529 DLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANV 588

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           L   M   G  PD S YNTL+ G    G ++++ EL   M SNG   D F+
Sbjct: 589 LFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 639



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 129/273 (47%), Gaps = 11/273 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K+  +D    +F  + S    PD+ T+N +I+ +C+  RV  G  +
Sbjct: 394 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQL 449

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  I R     +  T+ +LI G C    +  A  LF ++ + G  PD  T   L+ G C 
Sbjct: 450 LREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCE 509

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL LFE +     +       D + Y+ I  G+CK   VD+A +LF  +    +
Sbjct: 510 NEKLEEALELFEVIQMSKIDL------DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGV 563

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TY  +I GFC  +  ++A  LF +M D G +P+  T+N ++    K G++D++  
Sbjct: 564 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIE 623

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           L+  M   G   DA     + D     GR++++
Sbjct: 624 LISEMRSNGFSGDAFTIKMVAD-LITDGRLDKS 655



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   + NIL     +N+  +  L LF+ +    +  D   YNI+I+  CK  +V  
Sbjct: 491 HGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDE 550

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            + +   +      PD  T+  +I G C +S I +A  LF K++  G +PD  TY TLI 
Sbjct: 551 AWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 610

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           G  + G    ++ L  EM   NG  G     DA T   + D L  +G +DK+
Sbjct: 611 GCLKAGEIDKSIELISEM-RSNGFSG-----DAFTIKMVAD-LITDGRLDKS 655


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 175/326 (53%), Gaps = 12/326 (3%)

Query: 18  CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           C+ N+L     +   +   + LF+    +   P+ +TY  LI+  CK G++   + +L  
Sbjct: 3   CALNLLV----RAGQHGQAVQLFREERCV---PNEFTYGSLIHGLCKAGKLDQAYELLDE 55

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           +      P       +I+GLC   R  +A   F  +    C PD+ T+  L++ L ++G 
Sbjct: 56  MRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A  +FE M   +      C P+ +TY+T+ +GLCK+G +D+A EL   M +    P+
Sbjct: 116 VEEAFQIFESMHTSSQ-----CLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPN 170

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V+TY+ L+ G C A   ++   L  EM  +G QP+V+ +N ++N LCK+ ++DEA  L++
Sbjct: 171 VITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQ 230

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
           LMI+ G  P    YN+LM+ FC + +V+RA  L   M   GC  DV +Y  +I G C++ 
Sbjct: 231 LMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDA 290

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++ A +L  +M++    P V+TY+T
Sbjct: 291 RLDDAQALLKQMVAARCVPDVITYST 316



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 178/349 (51%), Gaps = 13/349 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F IF+ M       P V ++  +   L K+   D  + L   +N  G  P++ TY++L+ 
Sbjct: 120 FQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVE 179

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK GR   GF +L  + R  F PD + + +L+ GLC   R+ EA  L   +   GC P
Sbjct: 180 GLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYP 239

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            V TY +L+   CR+     A  L + M+    E G  C PD I Y+T+  GLC++  +D
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLIQVMS----ERG--CPPDVINYNTVIAGLCRDARLD 293

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFC----YANDWN-EAKCLFIEMMDQ-GVQPNVV 234
            A+ L  +M      PDV+TY+++I G C       DW  EA C  +EMM Q G  PN  
Sbjct: 294 DAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAG 353

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+ V++  LC+  K  +A  LL  MI   V PD S ++ ++   C +  ++ A ++F  M
Sbjct: 354 TYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMM 413

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               C  +  +Y  LI+G  K  E++ A+ ++ E++ +  RP V TYN+
Sbjct: 414 SERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNS 461



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 11/334 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   L K++  D  L L + +   G +P + TYN L+  FC+  +V   F +
Sbjct: 204 PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRL 263

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PD + + ++I GLC ++R+ +A AL  ++ A  C PDV TY+T+I+GLC+
Sbjct: 264 IQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCK 323

Query: 135 TGHTIVALNL-----FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
                    L       EM    G     C P+A TY+ + +GLC+     +A  L  +M
Sbjct: 324 DWRVDADWKLEAACEILEMMKQTG-----CPPNAGTYAVVIEGLCRARKSQQALALLRRM 378

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            D  + PD+ +++ +I   C ++D + A  +F  M ++  +PN V +  +++ L K G++
Sbjct: 379 IDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEV 438

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D+A R+ ELM++   RP  + YN+++DG C  GR+  A  +   M    C  D  SYG L
Sbjct: 439 DKAVRVFELMVE-SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGAL 497

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I G C+   +E A  L+  + +KG    V  YN 
Sbjct: 498 IRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNV 531



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 175/343 (51%), Gaps = 15/343 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    PP V   N +   L K   +   L  FK +      PD+ T+NIL++   K GR
Sbjct: 56  MRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115

Query: 68  VSPGFVVLGRILRS--CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           V   F +   +  S  C  P+ VT+T++I GLC + ++  A  L   +   GC P+V TY
Sbjct: 116 VEEAFQIFESMHTSSQCL-PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITY 174

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           + L+ GLC+ G T     L +EM           +PD I Y+T+ +GLCK   +D+A EL
Sbjct: 175 SVLVEGLCKAGRTDKGFTLLQEMTRRG------FQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
              M      P VVTY SL+  FC +   + A  L   M ++G  P+V+ +N ++  LC+
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN------RAKELFVSMESNGC 299
           + ++D+A  LL+ M+     PD   Y+T++DG C   RV+       A E+   M+  GC
Sbjct: 289 DARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +  +Y ++I G C+ ++ + AL+L   M+   + P + +++
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFS 391



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 164/342 (47%), Gaps = 13/342 (3%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R     P   ++  L   L K    D    L   +   G+ P +  +N +I   CK G
Sbjct: 20  LFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAG 79

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR-AFGCKPDVFTY 125
           R          +  +  TPD +TF  L+  L    R+ EA  +F  +  +  C P+V TY
Sbjct: 80  RFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTY 139

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           TT+INGLC+ G    A+ L + M N  G     C P+ ITYS + +GLCK G  DK   L
Sbjct: 140 TTVINGLCKDGKLDRAIELLDLM-NETG-----CCPNVITYSVLVEGLCKAGRTDKGFTL 193

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             +M      PDV+ Y +L+ G C +   +EA  L   M+  G  P VVT+N +M   C+
Sbjct: 194 LQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR 253

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           + ++D A RL+++M + G  PD   YNT++ G C   R++ A+ L   M +  C+ DV +
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT 313

Query: 306 YGILINGYCKNKEI------EGALSLYSEMLSKGIRPTVVTY 341
           Y  +I+G CK+  +      E A  +   M   G  P   TY
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 26/355 (7%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FDYM+R  P    V   N + G   +    D  +SL++++    +  ++Y++NILI CFC
Sbjct: 94  FDYMVRSRPFYTAV-DCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFC 152

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI---------------MEAAA 108
              ++S      G++ +  F PD VTF +L+ GLC E RI               +EA A
Sbjct: 153 DCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVA 212

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           LF ++   G  P V T+ TLINGLC  G  + A  L  +M  G G        D +TY T
Sbjct: 213 LFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV-GKG-----LHIDVVTYGT 266

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           I +G+CK G    A  L  KM++ +I PDVV Y+++I   C     ++A+ LF EM+++G
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG 326

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           + PNV T+N +++  C  G+  +A RLL  MI+  + PD   +N L+      G++  A+
Sbjct: 327 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAE 386

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +L   M       D  +Y  +I G+CK+   + A  ++  M S    P VVT+NT
Sbjct: 387 KLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNT 437



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 170/329 (51%), Gaps = 10/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+ H+     LF  +   G+ P+++TYN +I+ FC  GR S    +
Sbjct: 294 PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 353

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD +TF +LI     E ++ EA  L  ++      PD  TY ++I G C+
Sbjct: 354 LRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK 413

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F+ MA+          PD +T++TI D  C+   VD+  +L  ++    +
Sbjct: 414 HNRFDDAKHMFDLMAS----------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 463

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +  TY +LI GFC  ++ N A+ LF EM+  GV P+ +T N+++   C+N K++EA  
Sbjct: 464 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 523

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E++    +  D   YN ++ G C   +V+ A +LF S+  +G   DV +Y ++I+G+C
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 583

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               I  A  L+ +M   G  P   TYNT
Sbjct: 584 GKSAISDANVLFHKMKDNGHEPDNSTYNT 612



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L     K         L   +    +FPD  TYN +I  FCK  R    F  
Sbjct: 364 PDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR----FDD 419

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +PD VTF ++I   C   R+ E   L  ++   G   +  TY TLI+G C 
Sbjct: 420 AKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCE 479

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A +LF+EM +       VC PD IT + +  G C+   +++A ELF  ++   I
Sbjct: 480 VDNLNAAQDLFQEMISHG-----VC-PDTITCNILLYGFCENEKLEEALELFEVIQMSKI 533

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + D V Y  +I G C  +  +EA  LF  +   GV+P+V T+NV+++  C    + +A+ 
Sbjct: 534 DLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANV 593

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M   G  PD S YNTL+ G    G ++++ EL   M SNG   D F+  +     C
Sbjct: 594 LFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIIC 653

Query: 315 KNKEIEGALSLYSEMLSKGIRPTV 338
           +  +         E++   +RP +
Sbjct: 654 RVSD--------EEIIENYLRPKI 669



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   + NIL     +N+  +  L LF+ +    +  D   YNI+I+  CK  +V  
Sbjct: 496 HGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDE 555

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            + +   +      PD  T+  +I G C +S I +A  LF K++  G +PD  TY TLI 
Sbjct: 556 AWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 615

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           G  + G    ++ L  EM   NG  G     DA T     + +C+
Sbjct: 616 GCLKAGEIDKSIELISEM-RSNGFSG-----DAFTIKMAEEIICR 654



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +++M        ++NI+   + K    D    LF  L   G+ PD+ TYN++I+ FC   
Sbjct: 527 VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKS 586

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +S   V+  ++  +   PD  T+ +LI+G      I ++  L +++R+ G   D FT  
Sbjct: 587 AISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK 646

Query: 127 TLINGLCRTGHTIVALNLFEEMANG 151
                +CR     +  N      NG
Sbjct: 647 MAEEIICRVSDEEIIENYLRPKING 671


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 172/325 (52%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+N L   LAK+   D V   +  + + G  P+ YTY  L+   C+  R      V   +
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                +P+  +++ LI GLC   ++ EAA L  ++   G +P+V TY +L++GLC+ G  
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A++LF  M          C PD + Y+ + DG  K+G + +A  LF +M ++   P V
Sbjct: 139 KEAVDLFSRMVYRG------CPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TY SL+ GF    ++   + LF +M+ QG  PN+ TFN +++  CK G M EA RL   
Sbjct: 193 FTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE 252

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M  +G  PD   YNTL+ G C  G+ + A+ L   M  +G   D+ SY ILI+GY K+  
Sbjct: 253 MRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGA 312

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A+ L+ E+   G+ P   +Y+T
Sbjct: 313 LDHAIKLFYEIPKSGLEPDAFSYST 337



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 171/326 (52%), Gaps = 6/326 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   L + + ++   S+F+ + + G  P++++Y+ILI   C+  +V     +
Sbjct: 50  PNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAEL 109

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+ VT+ SL+ GLC   ++ EA  LF+++   GC PD   Y  LI+G  +
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  LFEEM          C P   TY+++  G  ++G   + + LF  M  +  
Sbjct: 170 KGDMGEAYRLFEEMLEKG------CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGC 223

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ T+ +L+ GFC   D  EA  LF+EM   G  P+VV++N ++  +C  GK  EA R
Sbjct: 224 VPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQR 283

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  MI+ GV PD   YN L+DG+  +G ++ A +LF  +  +G   D FSY  +I+  C
Sbjct: 284 LLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLC 343

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           +  ++  A  ++ +M++ G  P    
Sbjct: 344 RAGKVGAAFVVFKDMIANGSAPDAAV 369



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 161/324 (49%), Gaps = 6/324 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K       + LF R+   G  PD   YN+LI+ F K G +   + +
Sbjct: 120 PNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRL 179

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P   T+ SL+ G   +       +LF  +   GC P++FT+  L++G C+
Sbjct: 180 FEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  LF EM +      + C PD ++Y+T+  G+C +G   +A+ L  +M    +
Sbjct: 240 MGDMVEAHRLFLEMRS------LGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGV 293

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+V+Y  LI G+  +   + A  LF E+   G++P+  +++ I++ LC+ GK+  A  
Sbjct: 294 GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFV 353

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + MI  G  PDA+V   L+ G C   R+  + ELF +M    C+  +  Y +L+   C
Sbjct: 354 VFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLC 413

Query: 315 KNKEIEGALSLYSEMLSKGIRPTV 338
           K K  +    ++ E+  +G  P V
Sbjct: 414 KAKRSDDVCEIFHELTERGFSPDV 437



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 135/261 (51%), Gaps = 6/261 (2%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           +    +++  L++ L    R       +  + A GC P+ +TY  L+  LC+      A 
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
           ++F  MA         C P+  +YS +  GLC+   VD+A EL  +M D    P+VVTY 
Sbjct: 73  SVFRGMAAQG------CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYG 126

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           SL+ G C      EA  LF  M+ +G  P+ V +NV+++   K G M EA RL E M++ 
Sbjct: 127 SLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEK 186

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G  P    YN+L+ GF   G   R + LF  M   GC+ ++F++  L++G+CK  ++  A
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEA 246

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
             L+ EM S G  P VV+YNT
Sbjct: 247 HRLFLEMRSLGCPPDVVSYNT 267



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 6/290 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP    +N+L    +K         LF+ +   G  P ++TYN L++ F + G       
Sbjct: 154 PPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQS 213

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +LR    P+  TF +L+ G C    ++EA  LF ++R+ GC PDV +Y TLI G+C
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMC 273

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A  L  EM            PD ++Y+ + DG  K G +D A +LF ++    
Sbjct: 274 SKGKPHEAQRLLREMIRSG------VGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSG 327

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  +Y+++I   C A     A  +F +M+  G  P+      ++  LC+  ++ E+ 
Sbjct: 328 LEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESC 387

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            L + M++    P    YN LM   C   R +   E+F  +   G   DV
Sbjct: 388 ELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDV 437



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 128/262 (48%), Gaps = 6/262 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L    ++   +  V SLFK +   G  P+++T+N L++ FCKMG +     +
Sbjct: 190 PTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRL 249

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD V++ +LI+G+C++ +  EA  L  ++   G  PD+ +Y  LI+G  +
Sbjct: 250 FLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSK 309

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A+ LF E+     E      PDA +YSTI D LC+ G V  A  +F  M     
Sbjct: 310 SGALDHAIKLFYEIPKSGLE------PDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGS 363

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD      L+ G C      E+  LF  M+     P +  +N++M +LCK  + D+   
Sbjct: 364 APDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCE 423

Query: 255 LLELMIQIGVRPDASVYNTLMD 276
           +   + + G  PD  +   +++
Sbjct: 424 IFHELTERGFSPDVEISKVILE 445


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 163/304 (53%), Gaps = 6/304 (1%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F  +   GL  D  TY  +IN  C+   +     +L  +       D VT+T LI G C 
Sbjct: 384 FDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCK 443

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             ++ EA  +   +   G  P+V TYT L +GLC+ G    A  L  EM+N   E     
Sbjct: 444 RGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLEL---- 499

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
             +A TY+++ +GLCK G++++A      M    + PDV TYT+LI   C + D + A  
Sbjct: 500 --NACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHS 557

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  EM+D+G++P +VT+NV+MN  C +G+++   +LL+ M++  + P+A+ YN+LM  +C
Sbjct: 558 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYC 617

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
           +   +    E++  M S     +  +Y ILI G+CK + ++ AL  + EM+ KG R T  
Sbjct: 618 IENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTAT 677

Query: 340 TYNT 343
           +Y+ 
Sbjct: 678 SYSA 681



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 167/341 (48%), Gaps = 10/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M     S P V ++ IL          +  + L   + + G+ P+   Y  ++   
Sbjct: 281 LFDEM----ASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALL 336

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +S    V+  +++     D   +T+++ G C +  ++ A   F +++  G   D 
Sbjct: 337 CDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDG 396

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYTT+INGLCR      A  L +EM      +      D +TY+ + DG CK G + +A
Sbjct: 397 VTYTTMINGLCRAVELEEAEKLLQEM------WARRLDVDEVTYTVLIDGYCKRGKMAEA 450

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++   M    + P+VVTYT+L  G C   D   A  L  EM ++G++ N  T+N ++N 
Sbjct: 451 FQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLING 510

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +++A R +  M    ++PD   Y TL+D  C +G ++RA  L   M   G    
Sbjct: 511 LCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPT 570

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y +L+NG+C +  +EG   L   ML K I P   TYN+
Sbjct: 571 IVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNS 611



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 7/339 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M R   +   V ++  +   L +    +    L + + +  L  D  TY +LI+ +C
Sbjct: 384 FDEMQRKGLATDGV-TYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYC 442

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G+++  F +   +++   TP+ VT+T+L  GLC +  +  A  L  ++   G + +  
Sbjct: 443 KRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNAC 502

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY +LINGLC+ G+   A+    +M           KPD  TY+T+ D LCK G +D+A 
Sbjct: 503 TYNSLINGLCKAGYLEQAMRTMADMDTA------CLKPDVYTYTTLIDALCKSGDLDRAH 556

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L  +M D+ I P +VTY  L+ GFC +      K L   M+++ + PN  T+N +M + 
Sbjct: 557 SLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQY 616

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C    M   + + + M    V P+ + YN L+ G C    +  A      M   G     
Sbjct: 617 CIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTA 676

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            SY  LI    K K+   A  L+ +M  +G+      Y+
Sbjct: 677 TSYSALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYD 715



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 167/408 (40%), Gaps = 119/408 (29%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
           +HY   +S +K  +S     D  +++ L+ C        P   +L R+ +   +P     
Sbjct: 191 EHY---ISTYKTFSS-----DPASFDFLLLCL-------PSAPLLRRLRQYGISPSPEAC 235

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
            +++  L  +    EA  LF +L       +V +Y  L+  LC  G    A  LF+EMA+
Sbjct: 236 NAVLSRLPLD----EAIELFQEL----PHKNVCSYNILLKALCDAGRVKDARQLFDEMAS 287

Query: 151 GN---------------GEFGVVCK-----------PDAITYSTITDGLCKEGFVD---- 180
                            GE     K           P+A  Y+++   LC +G++     
Sbjct: 288 APDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALR 347

Query: 181 -------------------------------KAKELFLKMKDENINPDVVTYTSLIRGFC 209
                                           A+  F +M+ + +  D VTYT++I G C
Sbjct: 348 VVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLC 407

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            A +  EA+ L  EM  + +  + VT+ V+++  CK GKM EA ++   M+Q GV P+  
Sbjct: 408 RAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVV 467

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNG------------------------------- 298
            Y  L DG C  G V  A EL   M + G                               
Sbjct: 468 TYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADM 527

Query: 299 ---CMR-DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              C++ DV++Y  LI+  CK+ +++ A SL  EML KGI+PT+VTYN
Sbjct: 528 DTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYN 575



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 120/262 (45%), Gaps = 6/262 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K         L   +++ GL  +  TYN LIN  CK G +      
Sbjct: 464 PNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRT 523

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  +C  PD  T+T+LI  LC    +  A +L  ++   G KP + TY  L+NG C 
Sbjct: 524 MADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 583

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G       L + M   N        P+A TY+++    C E  +    E++  M+  ++
Sbjct: 584 SGRVEGGKKLLDWMLEKN------IHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDV 637

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY  LI+G C A +  EA     EM+ +G +    +++ ++  L K  K  EA  
Sbjct: 638 GPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARE 697

Query: 255 LLELMIQIGVRPDASVYNTLMD 276
           L   M + G+  ++ VY+  +D
Sbjct: 698 LFHDMRKEGLTAESDVYDFYID 719


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 177/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L   L K         LF ++   G+ P+L+T+NI I   CK G +     +
Sbjct: 293 PDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRL 352

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG + R    PD VT+ ++I GLC +SR++EA     K+   G +P+ FTY ++I+G C+
Sbjct: 353 LGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCK 412

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  + ++            KPD  TY ++ +G C++G  D+A  +F     + +
Sbjct: 413 KGMVVDANRILKDAVFKG------FKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGL 466

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P ++ Y +LI+G C       A  L  EM ++G +P++ T+N+I+N LCK G + +A+ 
Sbjct: 467 RPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANH 526

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+   I  G  PD   YNTL+DG+C   +++ A EL   M S G   DV +Y  L+NG C
Sbjct: 527 LIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLC 586

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  + E  + ++  M  KG  P ++TYNT
Sbjct: 587 KTAKSEEVMEIFKAMTEKGCAPNIITYNT 615



 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 167/310 (53%), Gaps = 6/310 (1%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D    LF  +    L PD+ T+N L++  CK G V     +  ++L+    P+  TF   
Sbjct: 277 DRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIF 336

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I+GLC E  +  A  L   +   G +PDV TY T+I GLCR    + A     +M NG  
Sbjct: 337 IQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGF 396

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           E      P+  TY++I DG CK+G V  A  +      +   PD  TY SL+ GFC   D
Sbjct: 397 E------PNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGD 450

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            ++A  +F + + +G++P+++ +N ++  LC+ G +  A +L+  M + G +PD   YN 
Sbjct: 451 PDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNL 510

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           +++G C  G ++ A  L     + GC+ D+F+Y  L++GYC+  +++ A+ L + M S+G
Sbjct: 511 IINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQG 570

Query: 334 IRPTVVTYNT 343
           + P V+TYNT
Sbjct: 571 MTPDVITYNT 580



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 172/330 (52%), Gaps = 9/330 (2%)

Query: 15  PPVCSFN-ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V ++N ++ G   K++  +    L K +N  G  P+ +TYN +I+ +CK G V     
Sbjct: 363 PDVVTYNTVICGLCRKSRVVEAEECLHKMVNG-GFEPNDFTYNSIIDGYCKKGMVVDANR 421

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L   +   F PD  T+ SL+ G C +    +A A+F      G +P +  Y TLI GLC
Sbjct: 422 ILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLC 481

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G  + AL L  EMA         CKPD  TY+ I +GLCK G +  A  L      + 
Sbjct: 482 QQGLILPALQLMNEMAEKG------CKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKG 535

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD+ TY +L+ G+C     + A  L   M  QG+ P+V+T+N ++N LCK  K +E  
Sbjct: 536 CIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVM 595

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + + M + G  P+   YNT+++  C + +VN A +L   M+S G   DV S+G LI G+
Sbjct: 596 EIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGF 655

Query: 314 CKNKEIEGALSLYSEMLSK-GIRPTVVTYN 342
           CK  +++GA  L+  M  +  +  T  TYN
Sbjct: 656 CKVGDLDGAYGLFRGMEKQYDVSHTTATYN 685



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 178/341 (52%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD +L+     P + +FNI    L K    D  + L   ++  GL PD+ TYN +I   
Sbjct: 317 LFDKVLK-RGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGL 375

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  RV      L +++   F P+  T+ S+I G C +  +++A  +       G KPD 
Sbjct: 376 CRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDE 435

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FTY +L+NG C+ G    A+ +F++        G   +P  I Y+T+  GLC++G +  A
Sbjct: 436 FTYCSLVNGFCQDGDPDQAMAVFKD------GLGKGLRPSIIVYNTLIKGLCQQGLILPA 489

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L  +M ++   PD+ TY  +I G C     ++A  L  + + +G  P++ T+N +++ 
Sbjct: 490 LQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDG 549

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+  K+D A  L+  M   G+ PD   YNTL++G C T +     E+F +M   GC  +
Sbjct: 550 YCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPN 609

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y  +I   C +K++  A+ L  EM SKG+ P VV++ T
Sbjct: 610 IITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGT 650



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 166/326 (50%), Gaps = 7/326 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L +       L L   +   G  PD++TYN++IN  CKMG +S    +
Sbjct: 468 PSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHL 527

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +G  +     PD  T+ +L+ G C + ++  A  L  ++ + G  PDV TY TL+NGLC+
Sbjct: 528 IGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCK 587

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T  +   + +F+ M          C P+ ITY+TI + LC    V++A +L  +MK + +
Sbjct: 588 TAKSEEVMEIFKAMTEKG------CAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGL 641

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEAS 253
            PDVV++ +LI GFC   D + A  LF  M  Q  V     T+N+I++   +   M  A 
Sbjct: 642 TPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMAL 701

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RL   M + G  PD   Y  L+DGFC TG VN+  +  +     G +  + ++G ++N  
Sbjct: 702 RLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCL 761

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVV 339
           C   +++ A+ +   M+ K I P  V
Sbjct: 762 CVEHKVQEAVGIIHLMVQKDIVPDTV 787



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 157/331 (47%), Gaps = 42/331 (12%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PD +TY  L+N FC+ G       V    L     P  + + +LIKGLC +  I+ A
Sbjct: 430 GFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPA 489

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L  ++   GCKPD++TY  +INGLC+ G    A +L  +           C PD  TY
Sbjct: 490 LQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKG------CIPDIFTY 543

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+ DG C++  +D A EL  +M  + + PDV+TY +L+ G C      E   +F  M +
Sbjct: 544 NTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTE 603

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G  PN++T+N I+  LC + K++EA  LL  M   G+ PD   + TL+ GFC  G ++ 
Sbjct: 604 KGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDG 663

Query: 287 AKELFVSMES------------------------------------NGCMRDVFSYGILI 310
           A  LF  ME                                     NGC  D ++Y +LI
Sbjct: 664 AYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLI 723

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +G+CK   +        E + KG  P++ T+
Sbjct: 724 DGFCKTGNVNQGYKFLLENIEKGFIPSLTTF 754



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 154/304 (50%), Gaps = 6/304 (1%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F+R++     P +Y+YN ++N   + G  +    V  R+       D  T+T  IK  C 
Sbjct: 178 FERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCR 237

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             R   A  L   +   GC  +   Y T++ G    G    A  LF+EM         +C
Sbjct: 238 TGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLE-----CCLC 292

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            PD  T++ +   LCK+GFV +++ LF K+    + P++ T+   I+G C     + A  
Sbjct: 293 -PDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVR 351

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L   +  +G++P+VVT+N ++  LC+  ++ EA   L  M+  G  P+   YN+++DG+C
Sbjct: 352 LLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYC 411

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G V  A  +       G   D F+Y  L+NG+C++ + + A++++ + L KG+RP+++
Sbjct: 412 KKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSII 471

Query: 340 TYNT 343
            YNT
Sbjct: 472 VYNT 475



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 6/244 (2%)

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
           + +I EA   F ++  F C P V++Y  ++N L   G+   A  ++  M +   E     
Sbjct: 168 KGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVE----- 222

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
             D  TY+      C+ G    A  L   M       + V Y +++ GF    D + A+ 
Sbjct: 223 -SDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARE 281

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           LF EM++  + P+V TFN +++ LCK G + E+ RL + +++ GV P+   +N  + G C
Sbjct: 282 LFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLC 341

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++RA  L   +   G   DV +Y  +I G C+   +  A     +M++ G  P   
Sbjct: 342 KEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDF 401

Query: 340 TYNT 343
           TYN+
Sbjct: 402 TYNS 405



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 136/295 (46%), Gaps = 22/295 (7%)

Query: 58  LINCFC-KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           L++ FC K   V    + L +  +  F     T+ S+++ L    +  E   L +++R+ 
Sbjct: 89  LVDVFCMKYEDVCIRNLQLIKKTKQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSN 148

Query: 117 GCKPDVFTYTTLINGL--------CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
                     TL+ G+         R G    A++ FE M   N      C P   +Y+ 
Sbjct: 149 -------LDNTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFN------CDPSVYSYNA 195

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           I + L + G+ ++A +++++MKD+ +  DV TYT  I+ FC       A  L   M   G
Sbjct: 196 IMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLG 255

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
              N V +  ++    + G  D A  L + M++  + PD + +N L+   C  G V  ++
Sbjct: 256 CFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESE 315

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LF  +   G   ++F++ I I G CK   ++ A+ L   +  +G+RP VVTYNT
Sbjct: 316 RLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNT 370



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +F  M + +       ++NI+    ++  +    L LF  +   G  PD YTY +LI+
Sbjct: 665 YGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLID 724

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FCK G V+ G+  L   +   F P   TF  ++  LC E ++ EA  +   +      P
Sbjct: 725 GFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVP 784

Query: 121 D 121
           D
Sbjct: 785 D 785


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 189/377 (50%), Gaps = 45/377 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++  M+R    P  + SFNI+   L K    +    + + +   G+  ++ TYN LI+ +
Sbjct: 150 VYKEMIRRRIEPTLI-SFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGY 208

Query: 63  CKMGRVSPGF---VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           CKMG++   +    +L  +      P+ VTF  LI G C +  +  A  +F ++   G K
Sbjct: 209 CKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVK 268

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+V TY +LINGLC  G    A  L ++M N         KP+ IT++ + +G CK   V
Sbjct: 269 PNVVTYNSLINGLCNNGKVNEATALRDQMVNS------CLKPNIITHNALLNGFCKNKMV 322

Query: 180 DKAKELFLKM--------------------KDENIN---------------PDVVTYTSL 204
            +A ELF  M                    KDEN+                PDV TY  L
Sbjct: 323 KQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCL 382

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I G C   D   A+ L  EM  + ++ +++T+N++++ LC  G+M +A RLL+ M + G+
Sbjct: 383 IAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGL 442

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
           +P    YNT++DG+C  G +  A  L   ME  G + +V +Y +LI G+CK  ++E A  
Sbjct: 443 KPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANG 502

Query: 325 LYSEMLSKGIRPTVVTY 341
           L +EML KG+ P  +TY
Sbjct: 503 LLNEMLEKGLIPNRMTY 519



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 188/342 (54%), Gaps = 14/342 (4%)

Query: 5   DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           DY L++      V S N L   L K      +  ++K +    + P L ++NI+IN  CK
Sbjct: 121 DYGLKLS-----VTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCK 175

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI---MEAAALFTKLRAFGCKPD 121
           +G+++    ++  +     + + +T+ +LI G C   +I    +A A+  ++RA G  P+
Sbjct: 176 VGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPN 235

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             T+  LI+G C+  +   A+ +F EM N  G      KP+ +TY+++ +GLC  G V++
Sbjct: 236 EVTFNILIDGFCKDKNVSAAMKVFAEM-NRQG-----VKPNVVTYNSLINGLCNNGKVNE 289

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L  +M +  + P+++T+ +L+ GFC      +A  LF +M  QG+ PNV T+N++++
Sbjct: 290 ATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILID 349

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK+  M++A  L  +M+  GV PD S YN L+ G C  G +  A+ L   M++     
Sbjct: 350 AYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKA 409

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D+ +Y ILI+  C   E++ AL L  EM  KG++P+ +TYNT
Sbjct: 410 DLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNT 451



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 159/324 (49%), Gaps = 22/324 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FNIL     K+K+    + +F  +N  G+ P++ TYN LIN  C  G+V+    +
Sbjct: 234 PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATAL 293

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ SC  P+ +T  +L+ G C    + +A  LF  +   G  P+V TY  LI+  C+
Sbjct: 294 RDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCK 353

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A  L+  M  G G    VC PD  TY+ +  GLC++G ++ A+ L  +M  +++
Sbjct: 354 DENMEDAFALYRIML-GKG----VC-PDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHL 407

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D++TY  LI   C   +  +A  L  EM  +G++P+ +T+N +++  CK G +  A  
Sbjct: 408 KADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALN 467

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M ++G   + + YN L+ GFC   ++  A  L   M   G + +  +Y I+     
Sbjct: 468 LRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVT---- 523

Query: 315 KNKEIEGALSLYSEMLSKGIRPTV 338
                        EM+ KG  P +
Sbjct: 524 ------------EEMMEKGFVPDI 535



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           E F +  D  +   V +   L+ G     +  + + ++ EM+ + ++P +++FN+++N L
Sbjct: 114 EAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGL 173

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN---RAKELFVSMESNGCM 300
           CK GK+++A  ++E M   GV  +   YNTL+DG+C  G++    +A  +   M ++G  
Sbjct: 174 CKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGIC 233

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  ++ ILI+G+CK+K +  A+ +++EM  +G++P VVTYN+
Sbjct: 234 PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNS 276


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 163/294 (55%), Gaps = 6/294 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD++ YN LI+ F K  ++     VL R+    F PD VT+  +I   C+  ++  A  +
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEI 195

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F +L    C+P V TYT LI      G   VA+ L +EM +   E      PD +TY+ I
Sbjct: 196 FEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLE------PDTLTYNAI 249

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             G+CKE  VDKA EL   +      PD++TY  L+R       W+E + L  EM+  G 
Sbjct: 250 IRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGC 309

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +PNVVT ++++  LC++GK++EA  LL  M + G++PDA  Y+ L+ GFC  GR++ A E
Sbjct: 310 KPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATE 369

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               M S+GC+ D+ +Y  ++ G C+  + + AL ++ ++   G  P V +YNT
Sbjct: 370 FLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNT 423



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 162/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++NI+ G        D  L +F+ L      P + TY ILI      G +     +
Sbjct: 171 PDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKL 230

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD +T+ ++I+G+C E  + +A  L   L + GCKPD+ TY  L+  L  
Sbjct: 231 LDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLS 290

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L  EM        + CKP+ +T+S +   LC++G V++A  L   MK++ +
Sbjct: 291 RGKWSEGEKLISEM------ISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGL 344

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   Y  LI GFC     + A      M+  G  P++V +N IM  LC+ GK D+A  
Sbjct: 345 KPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALE 404

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E + ++G  P+ S YNTL      +G   RA E+ + + + G   D  +Y  LI+  C
Sbjct: 405 VFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLC 464

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  ++ A+ L  +M S   RP VV+YN
Sbjct: 465 RDGMVDEAIELLVDMQSGRYRPNVVSYN 492



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 164/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    +    +  R+ S G  PD+ TYNI+I  FC  G++     +
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEI 195

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+    P  +T+T LI+    +  I  A  L  ++ + G +PD  TY  +I G+C+
Sbjct: 196 FEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCK 255

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L   +++        CKPD ITY+ +   L   G   + ++L  +M     
Sbjct: 256 EMMVDKAFELLRSLSSRG------CKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGC 309

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVT++ LI   C      EA  L   M ++G++P+   ++ ++   C+ G++D A+ 
Sbjct: 310 KPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATE 369

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            LE MI  G  PD   YNT+M G C TG+ ++A E+F  ++  GC  +V SY  L +   
Sbjct: 370 FLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALW 429

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + +   AL +  ++L++GI P  +TYN+
Sbjct: 430 SSGDRYRALEMILKLLNQGIDPDEITYNS 458



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 6/298 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +   + K    D    L + L+S G  PD+ TYNIL+      G+ S G  +
Sbjct: 241 PDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKL 300

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++     P+ VT + LI  LC + ++ EA  L   ++  G KPD + Y  LI G CR
Sbjct: 301 ISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCR 360

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +A    E M +        C PD + Y+TI  GLC+ G  D+A E+F K+ +   
Sbjct: 361 EGRLDLATEFLEYMISDG------CLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGC 414

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V +Y +L      + D   A  + +++++QG+ P+ +T+N +++ LC++G +DEA  
Sbjct: 415 PPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIE 474

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           LL  M     RP+   YN ++ G C   R N A E+  +M   GC  +  +Y +LI G
Sbjct: 475 LLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEG 532



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 148/292 (50%), Gaps = 7/292 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NIL   L     +     L   + SIG  P++ T++ILI   C+ G+V     +
Sbjct: 276 PDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNL 335

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PDA  +  LI G C E R+  A      + + GC PD+  Y T++ GLCR
Sbjct: 336 LRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCR 395

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    AL +FE++        V C P+  +Y+T+   L   G   +A E+ LK+ ++ I
Sbjct: 396 TGKADQALEVFEKLDE------VGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGI 449

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD +TY SLI   C     +EA  L ++M     +PNVV++N+I+  LCK  + ++A  
Sbjct: 450 DPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIE 509

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-NGCMRDVFS 305
           +L  M + G +P+ + Y  L++G   +G    A EL  S+   N    D F+
Sbjct: 510 VLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELANSLHGMNAISEDSFN 561



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 123/285 (43%), Gaps = 42/285 (14%)

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           L+N  C+ G+ +     L  ++   +TPD +  T LIKG      I +A  +   L  +G
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
                                                     KPD   Y+ +  G  K  
Sbjct: 135 ------------------------------------------KPDVFAYNALISGFIKAN 152

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            ++ A  +  +MK     PDVVTY  +I  FC     + A  +F E++    +P V+T+ 
Sbjct: 153 QLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYT 212

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           +++     +G +D A +LL+ M+  G+ PD   YN ++ G C    V++A EL  S+ S 
Sbjct: 213 ILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSR 272

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           GC  D+ +Y IL+       +      L SEM+S G +P VVT++
Sbjct: 273 GCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHS 317



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 68/140 (48%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S+N LF  L  +      L +  +L + G+ PD  TYN LI+C C+ G V     
Sbjct: 415 PPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIE 474

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +    + P+ V++  ++ GLC  +R  +A  +   +   GC+P+  TY  LI G+ 
Sbjct: 475 LLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIG 534

Query: 134 RTGHTIVALNLFEEMANGNG 153
            +G    A+ L   +   N 
Sbjct: 535 FSGLRAEAMELANSLHGMNA 554


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 182/345 (52%), Gaps = 11/345 (3%)

Query: 2   CIFDYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           C  + + +M  +   P   ++N+L   L K+   +   + F  +   G  PD+YTYNILI
Sbjct: 179 CALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 238

Query: 60  NCFCKMGRVSPGFVVLGR--ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           + FCK G        L +   +  C T D  T+T+++  L    +I EA AL  K+ A G
Sbjct: 239 SGFCKAGNTDAASHSLAQETTINGC-TIDIHTYTAIVDWLAKNKKIEEAVALMEKITANG 297

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           C P + TY  L+NGLC+ G    A++L  ++ + NG     C PD +TY+++ DGL KE 
Sbjct: 298 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD-NG-----CTPDVVTYTSLIDGLGKEK 351

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
              +A +LF +M    +  D V YT+LIR         +A  ++  M   G  P+VVT +
Sbjct: 352 RSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLS 411

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +++ L K G++  A R+ + M   G+ P+  VY+ L+ G C   +++ A E+   M+  
Sbjct: 412 TMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKA 471

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            C  D  +Y ILI+G CK+ ++E A + + EML  G +P V TYN
Sbjct: 472 FCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYN 516



 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 171/315 (54%), Gaps = 6/315 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++  +   LAKNK  +  ++L +++ + G  P + TYN L+N  CKMGR+     +L +I
Sbjct: 269 TYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 328

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           + +  TPD VT+TSLI GL  E R  EA  LF ++   G   D   YT LI  L +TG  
Sbjct: 329 VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKI 388

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A ++++ M +        C PD +T ST+ DGL K G +  A  +F  M+   + P+ 
Sbjct: 389 PQASSVYKTMTSHG------CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNE 442

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V Y++LI G C A   + A  +  +M      P+ +T+N++++ LCK+G ++ A    + 
Sbjct: 443 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDE 502

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M++ G +PD   YN L+ GFC  G  + A  +F  M S+ C  +V +YG LI+G CK ++
Sbjct: 503 MLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQ 562

Query: 319 IEGALSLYSEMLSKG 333
           +  A   +  M  +G
Sbjct: 563 LTKASLYFQHMKERG 577



 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 169/310 (54%), Gaps = 7/310 (2%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           +  ++L +++ + G  P + TYN L+N  CKMGR+     +L +I+ +  TPD VT+TSL
Sbjct: 3   EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 62

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I GL  E R  EA  LF ++   G   D   YT LI  L +TG    A ++++ M +   
Sbjct: 63  IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG- 121

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                C PD +T ST+ DGL K G +  A  +F  M+   + P+ V Y++LI G C A  
Sbjct: 122 -----CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 176

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            + A  +  +M      P+ +T+NV+++ LCK+G ++ A    + M++ G +PD   YN 
Sbjct: 177 MDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNI 236

Query: 274 LMDGFCLTGRVNRAKELFVSMES-NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           L+ GFC  G  + A        + NGC  D+ +Y  +++   KNK+IE A++L  ++ + 
Sbjct: 237 LISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITAN 296

Query: 333 GIRPTVVTYN 342
           G  PT+ TYN
Sbjct: 297 GCTPTIATYN 306



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 134/241 (55%), Gaps = 6/241 (2%)

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
           +I EA AL  K+ A GC P + TY  L+NGLC+ G    A++L  ++ + NG     C P
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD-NG-----CTP 54

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           D +TY+++ DGL KE    +A +LF +M    +  D V YT+LIR         +A  ++
Sbjct: 55  DVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVY 114

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
             M   G  P+VVT + +++ L K G++  A R+ + M   G+ P+  VY+ L+ G C  
Sbjct: 115 KTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKA 174

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +++ A E+   M+   C  D  +Y +LI+G CK+ ++E A + + EML  G +P V TY
Sbjct: 175 RKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY 234

Query: 342 N 342
           N
Sbjct: 235 N 235



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 63/129 (48%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            EA  L  ++   G  P + T+N ++N LCK G+++EA  LL  ++  G  PD   Y +L
Sbjct: 3   EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 62

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DG     R   A +LF  M   G   D   Y  LI    +  +I  A S+Y  M S G 
Sbjct: 63  IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGC 122

Query: 335 RPTVVTYNT 343
            P VVT +T
Sbjct: 123 VPDVVTLST 131



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 2   CIFDYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           C  + + +M  +   P   ++NIL   L K+   +   + F  +   G  PD+YTYNILI
Sbjct: 460 CALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 519

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           + FCK G       V   +  S  + + VT+ +LI GLC   ++ +A+  F  ++  G
Sbjct: 520 SGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  A  L   + +NGC   + +Y  L+NG CK   +E A+ L  +++  G  P VVTY 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 343 T 343
           +
Sbjct: 61  S 61


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 174/326 (53%), Gaps = 15/326 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L     + K+ +   SL +++ + G+  D+ TYN L++  CK GR+     +
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+  S   PD V ++S + GLC   ++++A  +  ++R     P+V TY T+++GLC+
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCK 269

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    AL + E+MA+ +G     C  + + YST+ DGLCK G   +A+ +   M     
Sbjct: 270 SGKIDTALEMMEQMASSDG-----CGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGC 324

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY+SL+ G C A    EA     EM  +G +PN VT+  +++ LC  G++ EA R
Sbjct: 325 RPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAER 384

Query: 255 LLELMIQIGVR-----PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           ++E M   G       P  S YN L+ G C  GR++ A + F  M S GC  D  SY  +
Sbjct: 385 MVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTI 444

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIR 335
           + G  ++       +L +EM+   +R
Sbjct: 445 VEGLARS-----GRALQAEMILSEVR 465



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 177/352 (50%), Gaps = 22/352 (6%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D + R   S P + +++ L     K    +    L K + S GL PD   Y  ++   
Sbjct: 68  VRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASL 127

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  R+     +L  ++R+   P  +TF +LI G C E  +  A +L  K+ A G K DV
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADV 187

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            TY TL++GLC+ G    A  L E M A+G       C PD + YS+   GLCK G V  
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERMKASG-------CAPDVVAYSSFVYGLCKSGKVLD 240

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-----GVQPNVVTF 236
           A ++  +M+D + +P+VVTY +++ G C +   + A    +EMM+Q     G   NVV +
Sbjct: 241 AHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTA----LEMMEQMASSDGCGLNVVGY 296

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           + +++ LCK G+  EA  ++E M + G RPD   Y++L++G C  G++  A E    M  
Sbjct: 297 STVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAM 356

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR-----PTVVTYNT 343
            GC  +  +Y  L++G C    +  A  +  EM S G       P+V TYN 
Sbjct: 357 EGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNA 408



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 164/303 (54%), Gaps = 12/303 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  P L T+N LI+  C+   +     +L ++  S    D VT+ +L+ GLC   R+ EA
Sbjct: 147 GCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEA 206

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L  +++A GC PDV  Y++ + GLC++G  + A  + E+M + + +      P+ +TY
Sbjct: 207 EQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHD------PNVVTY 260

Query: 167 STITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +TI DGLCK G +D A E+  +M   +    +VV Y++++ G C      EA+ +   M 
Sbjct: 261 NTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMA 320

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G +P+VVT++ ++N LCK GK++EA   +  M   G +P+A  Y +L+ G C  GR+ 
Sbjct: 321 RAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLA 380

Query: 286 RAKELFVSMESNG-----CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            A+ +   M S G     C   V +Y  LI G CK   I+ AL  +  M S+G  P  V+
Sbjct: 381 EAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVS 440

Query: 341 YNT 343
           Y+T
Sbjct: 441 YST 443



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 171/335 (51%), Gaps = 13/335 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN L    +K         L + + +  + P++ +YN L+   CK+ R      
Sbjct: 7   PPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEE 66

Query: 74  V----LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
           +    + R  RS  TPD VT+++L+ G C   ++ E+  L  ++ + G +PD   YT ++
Sbjct: 67  LVRDMISRGGRS--TPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVV 124

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
             LC++     AL L EEM          C P  IT++T+  G C+E  ++ A  L  KM
Sbjct: 125 ASLCKSARLGEALELLEEMIRAG------CCPTLITFNTLISGCCREKNLEMADSLLQKM 178

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               +  DVVTY +L+ G C A    EA+ L   M   G  P+VV ++  +  LCK+GK+
Sbjct: 179 AASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKV 238

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGI 308
            +A ++LE M      P+   YNT++DG C +G+++ A E+   M  S+GC  +V  Y  
Sbjct: 239 LDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYST 298

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +++G CK    + A S+   M   G RP VVTY++
Sbjct: 299 VVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSS 333



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++N L G L K    D  L  F+R+ S G  PD  +Y+ ++    + GR     +
Sbjct: 400 PPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEM 459

Query: 74  VLGRI 78
           +L  +
Sbjct: 460 ILSEV 464


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/258 (39%), Positives = 150/258 (58%), Gaps = 6/258 (2%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D V F +L+ GLC E R++EA AL  ++   G +P+  TY T++NG+C+ G T  ALNL 
Sbjct: 9   DVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLL 68

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
            +M   +       K D + Y+ I D LCK+G   KA+ LF +M D+ I P+V+TY  +I
Sbjct: 69  RKMDESH------IKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMI 122

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            G C    W +A+ L  +M++  V P+VVTFN ++N   K GK+ EA  L   M+   + 
Sbjct: 123 DGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIF 182

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD   YN+L+DGFC   R++ AK +F  M S G   +V +   LI G C+ K ++  + L
Sbjct: 183 PDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKL 242

Query: 326 YSEMLSKGIRPTVVTYNT 343
             EML +G+ P  V+YNT
Sbjct: 243 LHEMLRRGLVPDSVSYNT 260



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 156/286 (54%), Gaps = 6/286 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G   D+  +N L+N  C+ GRV     ++ R++ +   P+ VT+ +++ G+C       A
Sbjct: 5   GCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSA 64

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L  K+     K DV  YT +I+ LC+ GH   A NLF EM +  G F     P+ +TY
Sbjct: 65  LNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHD-KGIF-----PNVLTY 118

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + + DG C  G    A++L   M + N++PDVVT+ +LI  F      +EA+ L+ EM+ 
Sbjct: 119 NCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLG 178

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           + + P+ +T+N +++  CK+ ++D+A  + +LM+  G  P+    NTL+ G C   RV+ 
Sbjct: 179 RNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDD 238

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
             +L   M   G + D  SY  LI+G+C+  ++  A  L+ EM+S+
Sbjct: 239 GIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMISQ 284



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 95/281 (33%), Positives = 149/281 (53%), Gaps = 6/281 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +FN L   L +        +L  R+   G  P+  TY  ++N  CKMG       +L 
Sbjct: 10  VVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLR 69

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++  S    D V +T++I  LC +    +A  LFT++   G  P+V TY  +I+G C  G
Sbjct: 70  KMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYG 129

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L  +M   N        PD +T++ + +   KEG + +A+EL+ +M   NI P
Sbjct: 130 KWTDAEQLLRDMIESN------VDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFP 183

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D +TY SLI GFC  +  ++AK +F  M+ +G  PNV+T N ++   C+  ++D+  +LL
Sbjct: 184 DTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLL 243

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
             M++ G+ PD+  YNTL+ GFC  G +N A++LF  M S 
Sbjct: 244 HEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMISQ 284



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 132/227 (58%), Gaps = 6/227 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           GC+ DV  + TL+NGLCR G  + A  L + M   NG      +P+ +TY TI +G+CK 
Sbjct: 5   GCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVE-NGH-----QPNEVTYGTIVNGMCKM 58

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G  D A  L  KM + +I  DVV YT++I   C     ++A+ LF EM D+G+ PNV+T+
Sbjct: 59  GDTDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTY 118

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N +++  C  GK  +A +LL  MI+  V PD   +N L++ F   G+++ A+EL+  M  
Sbjct: 119 NCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLG 178

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                D  +Y  LI+G+CK+  ++ A  ++  M+SKG  P V+T NT
Sbjct: 179 RNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINT 225



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 8/176 (4%)

Query: 15  PPVCSFNILF-GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V ++N +  GC +  K  D    L + +    + PD+ T+N LIN F K G++S    
Sbjct: 113 PNVLTYNCMIDGCCSYGKWTDAE-QLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEE 171

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L     PD +T+ SLI G C  SR+ +A  +F  + + G  P+V T  TLI G C
Sbjct: 172 LYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCC 231

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           R       + L  EM       G+V  PD+++Y+T+  G C+ G ++ A++LF +M
Sbjct: 232 RAKRVDDGIKLLHEML----RRGLV--PDSVSYNTLIHGFCQAGDLNAAQDLFQEM 281



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 79/155 (50%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M ++    DVV + +L+ G C      EA+ L   M++ G QPN VT+  I+N +CK G 
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
            D A  LL  M +  ++ D  +Y  ++D  C  G  ++A+ LF  M   G   +V +Y  
Sbjct: 61  TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNC 120

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +I+G C   +   A  L  +M+   + P VVT+N 
Sbjct: 121 MIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNA 155


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 186/341 (54%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ ML+     P + SF+ + G  ++N      L+ F+++  +GL PD   Y ILIN +
Sbjct: 351 VFNEMLQ-RGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGY 409

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+   VS    +   ++      D VT+ +L+ GLC    + +A  LF ++   G  PD 
Sbjct: 410 CRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDF 469

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +T TTLI+G C+ G+   AL+LFE M   +       KPD +TY+T+ DG CK G ++KA
Sbjct: 470 YTLTTLIHGYCKDGNMTKALSLFETMTLRS------LKPDVVTYNTLMDGFCKVGEMEKA 523

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           KEL+  M    I P  ++++ LI GFC     +EA  L+ EM ++G++P +VT N I+  
Sbjct: 524 KELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKG 583

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             + G + +A+  L  MI  GV PD   YNTL++ F      +RA  L  +ME  G + +
Sbjct: 584 YLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPN 643

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y  ++ G+ ++  ++ A  +  +M+ KGI P   TY +
Sbjct: 644 LVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTS 684



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 160/301 (53%), Gaps = 14/301 (4%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           GL P L+TYN LIN  CK G       VL  +L     P+A TF  ++   C +  + EA
Sbjct: 289 GLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEA 348

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +F ++   G  PD+ ++++++    R G    AL  FE+M       GV   PD + Y
Sbjct: 349 ERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMK------GVGLVPDTVIY 402

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINP----DVVTYTSLIRGFCYANDWNEAKCLFI 222
           + + +G C+   V  A    LKM++E +      DVVTY +L+ G C     ++A  LF 
Sbjct: 403 TILINGYCRNDDVSGA----LKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFK 458

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM+++GV P+  T   +++  CK+G M +A  L E M    ++PD   YNTLMDGFC  G
Sbjct: 459 EMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVG 518

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            + +AKEL+  M S        S+ ILING+C    +  A  L+ EM  KGI+PT+VT N
Sbjct: 519 EMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCN 578

Query: 343 T 343
           T
Sbjct: 579 T 579



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K   Y+    +   +  +GL P+  T+N ++   C+   V     V
Sbjct: 292 PGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERV 351

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+    PD ++F+S++        +  A A F K++  G  PD   YT LING CR
Sbjct: 352 FNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCR 411

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL +  EM     E G  C  D +TY+T+ +GLC+   +D A ELF +M +  +
Sbjct: 412 NDDVSGALKMRNEMV----ERG--CVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGV 465

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  T T+LI G+C   +  +A  LF  M  + ++P+VVT+N +M+  CK G+M++A  
Sbjct: 466 FPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKE 525

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   MI   + P    ++ L++GFC  G V+ A  L+  M+  G    + +   +I GY 
Sbjct: 526 LWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYL 585

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   +  A    + M+S+G+ P  +TYNT
Sbjct: 586 RAGNLSKANDFLNTMISEGVPPDCITYNT 614



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 6/286 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N L   L + K  D    LFK +   G+FPD YT   LI+ +CK G ++    +  
Sbjct: 434 VVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFE 493

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      PD VT+ +L+ G C    + +A  L+  + +    P   +++ LING C  G
Sbjct: 494 TMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLG 553

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L++EM     E G+  KP  +T +TI  G  + G + KA +    M  E + P
Sbjct: 554 LVSEAFRLWDEMK----EKGI--KPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPP 607

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D +TY +LI  F    +++ A  L   M ++G+ PN+VT+N I+    ++G+M EA  +L
Sbjct: 608 DCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVL 667

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             MI  G+ PD S Y +L++G+     +  A  +   M   G + D
Sbjct: 668 HKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 6/289 (2%)

Query: 55  YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR 114
           +++LI  + +  ++  G      + +  F        +L+  +     +  A  ++    
Sbjct: 157 FDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFV 216

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
             G   +V+T   ++N LC+ G          EM     E GV    D +TY+T+ +  C
Sbjct: 217 KSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEME----EKGVYA--DLVTYNTLVNAYC 270

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           + G V +A  L   M  + + P + TY +LI G C    +  AK +  EM+  G+ PN  
Sbjct: 271 RRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAA 330

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           TFN ++ E C+   + EA R+   M+Q GV PD   +++++  F   G + RA   F  M
Sbjct: 331 TFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKM 390

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  G + D   Y ILINGYC+N ++ GAL + +EM+ +G    VVTYNT
Sbjct: 391 KGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNT 439



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 54/108 (50%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++N L     K +++D    L   +   GL P+L TYN ++  F + GR+    +
Sbjct: 606 PPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEM 665

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           VL +++     PD  T+TSLI G  ++  + EA  +  ++   G  PD
Sbjct: 666 VLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 178/336 (52%), Gaps = 9/336 (2%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFK-RLNSIGLFPDLYTYNILINCFCKMGRV 68
           +  S   V  +NI+   L +       L +F+  +   G+ P + TYN +IN  CK   +
Sbjct: 38  VRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNEL 97

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
             G  +   +++    PD VT+ +LI  LC    + EA  L   + + GC P+V TY+ L
Sbjct: 98  GAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVL 157

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           INGLC+ G    A  L +EM   + +      P+ ITY++  DGLCK+    +A EL   
Sbjct: 158 INGLCKVGRIDEARELIQEMTRKSCDV----LPNIITYNSFLDGLCKQSMTAEACELMRS 213

Query: 189 MKDEN--INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
           ++D +  ++PD VT+++LI G C     +EA     +M+  G  PNVVT+N ++N LCK 
Sbjct: 214 LRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA--CNDDMIAGGYVPNVVTYNALVNGLCKA 271

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            KM+ A  ++E M+  GV PD   Y+ L+D FC   RV+ A EL   M S GC  +V ++
Sbjct: 272 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTF 331

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +I+G CK+     A  +  ++ ++ + P  VT+N
Sbjct: 332 NSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFN 367



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 178/333 (53%), Gaps = 16/333 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L K+      + LF+ L   G  PD+ TYN LI+  CK G +     +
Sbjct: 79  PTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRL 138

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK--PDVFTYTTLINGL 132
            G +      P+ VT++ LI GLC   RI EA  L  ++    C   P++ TY + ++GL
Sbjct: 139 HGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 198

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+   T  A  L   + +G+    +   PD +T+ST+ DGLCK G  D+A        D+
Sbjct: 199 CKQSMTAEACELMRSLRDGS----LRVSPDTVTFSTLIDGLCKCGQTDEA------CNDD 248

Query: 193 NIN----PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
            I     P+VVTY +L+ G C A+    A  +   M+D+GV P+V+T++V+++  CK  +
Sbjct: 249 MIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 308

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +DEA  LL  M   G  P+   +N+++DG C + R   A ++ + + +   + D  ++ I
Sbjct: 309 VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNI 368

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           LI G CK    E A +L+ EM++K ++P V+T+
Sbjct: 369 LIAGACKAGNFEQASALFEEMVAKNMQPDVMTF 401



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 186/396 (46%), Gaps = 70/396 (17%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K    +    L   ++S G  P++ TY++LIN  CK+GR+     +
Sbjct: 114 PDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEAREL 173

Query: 75  LGRILR-SC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLR--AFGCKPDVFTYTTLIN 130
           +  + R SC   P+ +T+ S + GLC +S   EA  L   LR  +    PD  T++TLI+
Sbjct: 174 IQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLID 233

Query: 131 GLCRTGHTIVALNLFEEMANG---------NGEFGVVCK--------------------P 161
           GLC+ G T  A N  ++M  G         N     +CK                    P
Sbjct: 234 GLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTP 291

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS------------------ 203
           D ITYS + D  CK   VD+A EL   M      P+VVT+ S                  
Sbjct: 292 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIA 351

Query: 204 -----------------LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
                            LI G C A ++ +A  LF EM+ + +QP+V+TF  +++ LCK 
Sbjct: 352 LQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKA 411

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G+++ A  +L+LM  +GV P+   YN L+ G C +GR+    E    M S+GC+ +  +Y
Sbjct: 412 GQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTY 471

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G L+   C+    + AL L S++ S G  P  VTYN
Sbjct: 472 GSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYN 507



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 177/327 (54%), Gaps = 8/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F+ L   L K    D   +    + + G  P++ TYN L+N  CK  ++     +
Sbjct: 223 PDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAM 280

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++    TPD +T++ L+   C  SR+ EA  L   + + GC P+V T+ ++I+GLC+
Sbjct: 281 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 340

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +  +  A  +  ++ N       +  PD +T++ +  G CK G  ++A  LF +M  +N+
Sbjct: 341 SDRSGEAFQIALQVYNR------MLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNM 394

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+T+ +LI G C A     A+ +   M + GV PNVVT+NV+++ LCK+G+++E   
Sbjct: 395 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCE 454

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            LE M+  G  P++  Y +L+   C   R + A +L   ++S G   D  +Y IL++G  
Sbjct: 455 FLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLW 514

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K+ + E A+++  EM+ KG +P   T+
Sbjct: 515 KSGKTEQAITVLEEMVGKGHQPDSFTF 541



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 162/327 (49%), Gaps = 8/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K    +   ++ + +   G+ PD+ TY++L++ FCK  RV     +
Sbjct: 256 PNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALEL 315

Query: 75  L-GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L G   R C TP+ VTF S+I GLC   R  EA  +  ++      PD  T+  LI G C
Sbjct: 316 LHGMASRGC-TPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGAC 374

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+   A  LFEEM   N       +PD +T+  + DGLCK G V+ A+++   M +  
Sbjct: 375 KAGNFEQASALFEEMVAKN------MQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 428

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+VVTY  L+ G C +    E      EM+  G  P  +T+  ++  LC+  + D+A 
Sbjct: 429 VPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDAL 488

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L+  +   G  PD   YN L+DG   +G+  +A  +   M   G   D F++     G 
Sbjct: 489 QLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGL 548

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++  + G + L   +L+KG+ P   T
Sbjct: 549 HRSGNLAGTMELLRVVLAKGMLPDATT 575



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 138/314 (43%), Gaps = 38/314 (12%)

Query: 1   FCIFDYMLRMHP---------SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD 51
            C  D M R H            P V ++++L     K    D  L L   + S G  P+
Sbjct: 268 LCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPN 327

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
           + T+N +I+  CK  R    F +  ++      PD VTF  LI G C      +A+ALF 
Sbjct: 328 VVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFE 387

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV------------- 158
           ++ A   +PDV T+  LI+GLC+ G    A ++ + M N      VV             
Sbjct: 388 EMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSG 447

Query: 159 ----------------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
                           C P+++TY ++   LC+    D A +L  K+K    +PD VTY 
Sbjct: 448 RIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYN 507

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
            L+ G   +    +A  +  EM+ +G QP+  TF      L ++G +     LL +++  
Sbjct: 508 ILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAK 567

Query: 263 GVRPDASVYNTLMD 276
           G+ PDA+  ++++D
Sbjct: 568 GMLPDATTCSSILD 581



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFI-EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           V  Y  +++  C A +   A  +F  EM   GV P +VT+N I+N LCK+ ++     L 
Sbjct: 45  VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 104

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E +++ G  PD   YNTL+D  C  G +  A+ L   M S GC+ +V +Y +LING CK 
Sbjct: 105 EELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKV 164

Query: 317 KEIEGALSLYSEMLSKG--IRPTVVTYNT 343
             I+ A  L  EM  K   + P ++TYN+
Sbjct: 165 GRIDEARELIQEMTRKSCDVLPNIITYNS 193


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L +    + + SL   +    L P++  YN +I+  CK    S   VV
Sbjct: 327 PTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVV 386

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PDA+TF++LI GLC E R+ EA  L  +   +   P++ +YT+LI+G C 
Sbjct: 387 LKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCV 446

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  IVA NL  EM     E G    PD +T+  +  GL   G V +A  +  KM    +
Sbjct: 447 RGEVIVASNLLVEMM----ERGHT--PDVVTFGALIHGLVVAGQVSEALLVREKMAARQL 500

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   Y  LI G C       A+ L  EM++Q V P+   +  +++   +N  +DEA +
Sbjct: 501 LPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARK 560

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E M Q G+ PD   YN ++ G+C  G +N A E   +M   G + D F+Y  LI GY 
Sbjct: 561 IFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYA 620

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   I GALSL  +M+ +  +P VV Y++
Sbjct: 621 KQGNISGALSLLCDMMKRRCQPNVVAYSS 649



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 165/307 (53%), Gaps = 6/307 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L L +     G  P+   YN+LI+ +C+ G V  G ++LG +      P  VT+ +L+  
Sbjct: 279 LKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSW 338

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
           L  +  + + A+L +++R     P+V  Y ++I+ LC+      AL + ++M  G     
Sbjct: 339 LGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGG---- 394

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
             C PDAIT+ST+  GLC+EG V +A+ L  +     +NP++ +YTSLI GFC   +   
Sbjct: 395 --CDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIV 452

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  L +EMM++G  P+VVTF  +++ L   G++ EA  + E M    + PDA++YN L+ 
Sbjct: 453 ASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLIS 512

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C    +  A+ L   M       D + Y  LI+G+ +N+ ++ A  ++  M  KGI P
Sbjct: 513 GLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHP 572

Query: 337 TVVTYNT 343
            VV YN 
Sbjct: 573 DVVGYNA 579



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 157/329 (47%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F+ L   L +         L +      L P+L +Y  LI+ FC  G V     +
Sbjct: 397 PDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNL 456

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++    TPD VTF +LI GL    ++ EA  +  K+ A    PD   Y  LI+GLC+
Sbjct: 457 LVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCK 516

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A NL EEM   N        PD   Y+T+ DG  +   +D+A+++F  M+ + I
Sbjct: 517 KKMLPAARNLIEEMLEQN------VHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGI 570

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDVV Y ++I+G+C     NEA      M   G  P+  T+  ++    K G +  A  
Sbjct: 571 HPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALS 630

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M++   +P+   Y++L++G+C  G  + A+ LF SMES G   +V +Y ILI    
Sbjct: 631 LLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLF 690

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++  A   +  ML     P   T ++
Sbjct: 691 KKDKVVRAAMYFEYMLLNQCSPNDYTLHS 719



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 159/354 (44%), Gaps = 23/354 (6%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + M R H   P V +F  L   L         L + +++ +  L PD   YN+LI+  
Sbjct: 457 LVEMMERGHT--PDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGL 514

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK   +     ++  +L     PD   +T+LI G      + EA  +F  +   G  PDV
Sbjct: 515 CKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDV 574

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  +I G C+ G    A+     M     + G +  PD  TY+T+  G  K+G +  A
Sbjct: 575 VGYNAMIKGYCQFGMMNEAVECMSTMR----KVGRI--PDEFTYTTLIGGYAKQGNISGA 628

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M      P+VV Y+SLI G+C   D + A+CLF  M  QG+ PNV+T+ +++  
Sbjct: 629 LSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGS 688

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC--LTGRVNRAKELFVSMESNGCM 300
           L K  K+  A+   E M+     P+    ++L+ G C  +   ++      V++   G +
Sbjct: 689 LFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGAL 748

Query: 301 RDVF-------------SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            D+F             +Y  +I   C +  +  AL L ++M +KG +P   T+
Sbjct: 749 LDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSATF 802



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 147/367 (40%), Gaps = 59/367 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N+L   L K K      +L + +    + PD Y Y  LI+ F +   +     +
Sbjct: 502 PDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKI 561

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    PD V + ++IKG C    + EA    + +R  G  PD FTYTTLI G  +
Sbjct: 562 FEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAK 621

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL+L  +M          C+P+ + YS++ +G CK G  D A+ LF  M+ + +
Sbjct: 622 QGNISGALSLLCDMMKRR------CQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGL 675

Query: 195 NPDVVTYTSLIRGF--------------------CYANDWN----------------EAK 218
            P+V+TYT LI                       C  ND+                  + 
Sbjct: 676 FPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSH 735

Query: 219 C--------------LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           C              +F  +++    P    +N I+  LC +  + EA  L   M   G 
Sbjct: 736 CSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNKMANKGY 795

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK---EIEG 321
           +PD++ + +L+ GFC  G+    + +  +      +     Y IL + Y       E+  
Sbjct: 796 KPDSATFLSLLYGFCSVGKSREWRTILPNEFQRDELEVASRYKILFDQYVVKSVGCEVYS 855

Query: 322 ALSLYSE 328
              LY E
Sbjct: 856 VFQLYLE 862



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 2/183 (1%)

Query: 163 AITYST--ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           A  YST  +  GLC EG V+K  +L          P+ V Y  LI G+C   D      L
Sbjct: 257 ADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILL 316

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
             EM  +G+ P VVT+  +M+ L + G +++ + LL  M +  + P+  +YN+++D  C 
Sbjct: 317 LGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCK 376

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
               ++A  +   M + GC  D  ++  LI+G C+   ++ A  L  E     + P + +
Sbjct: 377 CRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSS 436

Query: 341 YNT 343
           Y +
Sbjct: 437 YTS 439



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           ++ L+  L R G          +M+       V   P       +       G   KA E
Sbjct: 153 HSALLRLLARAGRFDAVDATLRDMSLAGAAAAV---PTRACLGALVATYADAGMEAKAAE 209

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +  + ++ +      T+T+ +         W++A+ L+ EM+ +    +  +  V++  L
Sbjct: 210 MCQRAREHHGTLPGATHTNRLLRLLVERRRWDDARKLYDEMLAEESGADDYSTCVMVRGL 269

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  G +++  +L+E     G  P+A  YN L+DG+C  G V R   L   ME+ G +  V
Sbjct: 270 CLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTV 329

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +YG L++   +  ++E   SL SEM  + + P V  YN+
Sbjct: 330 VTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNS 369


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 168/331 (50%), Gaps = 11/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +     + +  D      +++ + G  PD+ TY  LI  FCK   V  G  +
Sbjct: 142 PTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLEL 201

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG + R  FTPD VT++++I GLC   R+ +A  +F ++    C P   TY +LI G CR
Sbjct: 202 LGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCR 258

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ L  +M +        C PD +TY+T+    CK G +D A ELF +M    +
Sbjct: 259 AGDMDEAIRLLGKMVDDK------CAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKL 312

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDVVT+TSL+ G C      +A  L  E+  +G  P + T+N +++  CK  ++ +A  
Sbjct: 313 SPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEE 372

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG--CMRDVFSYGILING 312
           L+      G  P+   YN L+ G C  GR ++A +    + S G  C   V  Y I+++ 
Sbjct: 373 LVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDA 432

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            C++   + A+  Y EM+ +G  P   T+ T
Sbjct: 433 LCRDGRTDDAVQFYEEMIQRGYVPAAATFAT 463



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 166/328 (50%), Gaps = 9/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +  ++   L      D    L + +   G+  +  TY+ L++  CK  R+     +
Sbjct: 72  PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVAL 131

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      P  VT+ S+I G C   R+ EA     ++ A GC PD+ TYT LI G C+
Sbjct: 132 VETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCK 191

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +      L L  E+            PD +TYST+ DGLCK G +  A ++F +M   + 
Sbjct: 192 SRDVGRGLELLGEVTRRG------FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SC 242

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P  +TY SLI G+C A D +EA  L  +M+D    P+VVT+  +M+  CK G++D+A  
Sbjct: 243 APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYE 302

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+   + PD   + +L+DG C  GR+  A EL   +   GC   +++Y  +++GYC
Sbjct: 303 LFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYC 362

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K  ++  A  L ++  S+G  P  VTYN
Sbjct: 363 KANQVRKAEELVADFRSRGFVPNTVTYN 390



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 172/315 (54%), Gaps = 9/315 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++ L   L K +  D  ++L + +   G  P + TYN +I  FC+  RV      + ++
Sbjct: 111 TYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQM 170

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     PD +T+T+LI G C    +     L  ++   G  PD+ TY+T+I+GLC+ G  
Sbjct: 171 VAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRL 230

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+++FEEM+         C P AITY+++  G C+ G +D+A  L  KM D+   PDV
Sbjct: 231 RDAVDIFEEMS---------CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDV 281

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTYT+L+  FC     ++A  LF +M+   + P+VVTF  +++ LC  G+M++A  LLE 
Sbjct: 282 VTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEE 341

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           + + G  P    YN ++DG+C   +V +A+EL     S G + +  +Y IL+ G C+   
Sbjct: 342 ITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGR 401

Query: 319 IEGALSLYSEMLSKG 333
            + AL    ++ S+G
Sbjct: 402 TDQALQYLDQLNSEG 416



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 170/329 (51%), Gaps = 10/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P     N++ G L +       L +++++N     PD  TY  L++   K  R+     V
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   PD  T T +++ LC   R+ +A  L  ++   G   +  TY+ L++GLC+
Sbjct: 62  LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 121

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ L E MA    E G  C P  +TY++I  G C+   VD+A     +M  E  
Sbjct: 122 CERLDEAVALVETMA----ERG--CAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGC 175

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD++TYT+LI GFC + D      L  E+  +G  P++VT++ +++ LCK G++ +A  
Sbjct: 176 HPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVD 235

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E   ++   P A  YN+L+ G+C  G ++ A  L   M  + C  DV +Y  L++ +C
Sbjct: 236 IFE---EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFC 292

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   ++ A  L+ +M++  + P VVT+ +
Sbjct: 293 KMGRLDDAYELFQQMVANKLSPDVVTFTS 321



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 135/278 (48%), Gaps = 8/278 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L G   +    D  + L  ++      PD+ TY  L++ FCKMGR+   + +
Sbjct: 244 PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYEL 303

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ +  +PD VTFTSL+ GLC E R+ +A  L  ++   GC P ++TY  +++G C+
Sbjct: 304 FQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK 363

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN- 193
                 A    EE+       G V  P+ +TY+ +  G C+ G  D+A +   ++  E  
Sbjct: 364 ANQVRKA----EELVADFRSRGFV--PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGG 417

Query: 194 -INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
                V  Y  ++   C     ++A   + EM+ +G  P   TF  ++  LCK  +  +A
Sbjct: 418 PCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQA 477

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
             LLE MI+ G  P     + ++  +C  G + +A EL
Sbjct: 478 HELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADEL 515



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +NP  + +  +I G C A     A  ++ +M D    P+ +T+  +++ L K  ++ +A 
Sbjct: 1   MNPGTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDAV 59

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           ++L+ M+     PD +    ++   CL  RV+ A+EL   M   G   +  +Y  L++G 
Sbjct: 60  QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK + ++ A++L   M  +G  PTVVTYN+
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNS 149



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 10/180 (5%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + ++N +     K         L     S G  P+  TYNIL+   C+ GR      
Sbjct: 348 PPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQ 407

Query: 74  VLGRILRS---CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            L ++      C T  A+ +  ++  LC + R  +A   + ++   G  P   T+ T++ 
Sbjct: 408 YLDQLNSEGGPCPTSVAM-YAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVF 466

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
            LC+      A  L EEM     ++G    P   T   +    C+ G + KA EL  +++
Sbjct: 467 ALCKAHQPQQAHELLEEMI----KYGHT--PGPGTCDAVVSAYCRAGMIQKADELASELR 520



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/105 (20%), Positives = 44/105 (41%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P P  V  + I+   L ++   D  +  ++ +   G  P   T+  ++   CK  +    
Sbjct: 418 PCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQA 477

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
             +L  +++   TP   T  +++   C    I +A  L ++LR +
Sbjct: 478 HELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRLY 522


>gi|296087920|emb|CBI35203.3| unnamed protein product [Vitis vinifera]
          Length = 394

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 178/356 (50%), Gaps = 43/356 (12%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  ML MHP PPP+  F  L   +AK KHY TVLSL K+++S G+ PD+YT  I+IN FC
Sbjct: 53  FHRMLHMHP-PPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFC 111

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR--------- 114
            + RV     VL +IL+    PD  TFT+L++GLC   +I EA  +F K+          
Sbjct: 112 HLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNPN 171

Query: 115 ----AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
               A G  PD+FTY +LI+ LC          L  EM            P+ ++ + + 
Sbjct: 172 LIMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSK------IMPNVVSLNIVV 225

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           D LCKEG V +A ++   M    + PDVVTY +L+ G C  ++ +EA  +F  M+  G  
Sbjct: 226 DALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCV 285

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA--- 287
            NVV++N ++N L               M+  G  P+   Y+ L+D  C   R+  A   
Sbjct: 286 CNVVSYNTLINALFNE------------MVACGQIPNLVTYSILLDYLCKNHRLAEAMAL 333

Query: 288 --------KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
                   ++LF ++   G   DV+++ I+I G CK   ++ A  L+ EM    I+
Sbjct: 334 LKAIEGTARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENDIK 389



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 140/279 (50%), Gaps = 31/279 (11%)

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R+L     P    F  L+  +          +L  K+ +FG  PDV+T T +IN  C   
Sbjct: 55  RMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLN 114

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN--- 193
               AL++  ++        +  +PD  T++T+  GLC  G + +A ++F KM  E    
Sbjct: 115 RVDFALSVLAKI------LKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQP 168

Query: 194 ----------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                     I+PD+ TY SLI   C   +W     L  EM+   + PNVV+ N++++ L
Sbjct: 169 NPNLIMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDAL 228

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK GK+ EA  ++++MIQ GV PD   Y  LMDG CL   ++ A ++F  M  NGC+ +V
Sbjct: 229 CKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNV 288

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            SY  LIN            +L++EM++ G  P +VTY+
Sbjct: 289 VSYNTLIN------------ALFNEMVACGQIPNLVTYS 315



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 13/177 (7%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A   F +M   +  P +  +  L+        ++    L  +M   G+ P+V T  +
Sbjct: 46  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTI 105

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF------- 291
           ++N  C   ++D A  +L  ++++G +PD + + TL+ G C+ G++  A ++F       
Sbjct: 106 VINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEG 165

Query: 292 ------VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                 + M + G   D+F+Y  LI+  C   E +   +L +EM+   I P VV+ N
Sbjct: 166 FQPNPNLIMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLN 222



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 13/147 (8%)

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
           + N  ++A   F  M+     P +  F  ++  + K         L + M   G+ PD  
Sbjct: 42  HFNTLDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVY 101

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
               +++ FC   RV+ A  +   +   G   D  ++  L+ G C   +I  AL ++ +M
Sbjct: 102 TLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKM 161

Query: 330 LS-------------KGIRPTVVTYNT 343
           +              KGI P + TYN+
Sbjct: 162 VGEGFQPNPNLIMIAKGISPDIFTYNS 188


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 179/344 (52%), Gaps = 8/344 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + I + ML+   +P    SFNIL    A+ +  D  ++ F+ +      PDL+T+ IL++
Sbjct: 139 YAIHEEMLKAGIAPNTF-SFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVD 197

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTP-DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           C CK G     F V   ++   F P D    T++++ L    R+ EA  +F ++   G  
Sbjct: 198 CLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFP 257

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD   Y T+I+GL + GH   AL + + M          C P  +TY  + + LCK G +
Sbjct: 258 PDAIAYNTMIDGLAKAGHAQEALKVLDNM------LAKACVPTEVTYGILVNSLCKAGTL 311

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           ++A+ELF  M      P+ V YTSLI GF  +    EA  LF EM++ G +P+V+T  V+
Sbjct: 312 ERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVM 371

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LCK+G  ++A++  E M++ G +P+   Y T++ G    GRV  A  +   M ++GC
Sbjct: 372 IDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGC 431

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             D  +Y  L++G+CK   ++ A  L  E+      P +  Y++
Sbjct: 432 FPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSS 475



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 170/368 (46%), Gaps = 44/368 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++N +   LAK  H    L +   + +    P   TY IL+N  CK G +     
Sbjct: 257 PPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEE 316

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S F P++V +TSLI G     R+ EA +LF ++   G +PDV T+T +I+GLC
Sbjct: 317 LFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLC 376

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           ++G+   A   FEEM  G       CKP+ +TY+TI  GL K G V  A  +   M    
Sbjct: 377 KSGNFEQAAKSFEEMMRGG------CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHG 430

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN------------ 241
             PD VTY  L+ GFC     +EA  L  E+      PN+  ++ ++             
Sbjct: 431 CFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTL 490

Query: 242 ------------------------ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
                                    LCK G++DEA R+ + M+  G +PDA+ YN L++G
Sbjct: 491 DDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING 550

Query: 278 FCLT--GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            C +   RV RA  L   +E  G + D  +Y  L  G CK  E++ A+ +  E  S+G  
Sbjct: 551 LCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWN 610

Query: 336 PTVVTYNT 343
             VV Y  
Sbjct: 611 ADVVAYTA 618



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 182/376 (48%), Gaps = 46/376 (12%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ M+R     P V ++  +   L+K         + K + + G FPD  TY  L++ FC
Sbjct: 388 FEEMMR-GGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFC 446

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC-------------------AES--- 101
           K+GR+     +L  + +   +P+   ++SL+KGLC                   AE+   
Sbjct: 447 KLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDP 506

Query: 102 --------------RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV--ALNLF 145
                         R+ EA  +F ++ + GCKPD  TY  LINGLCR+    V  A  L 
Sbjct: 507 GLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALL 566

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
            ++        V   PDA+TY+ +  GLCK G VD+A ++  +      N DVV YT+L 
Sbjct: 567 HDLEM------VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALC 620

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            G CY    + A  LF EM+ QG  P+   +  I+N L K  K+++A +  + MI  G +
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQK 680

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNG-CMRDVFSYGILINGYCKNKEIEGALS 324
           P  + Y  L+   C  G V+ A   F  M + G  +  V  Y  LI+G+CK  +++ AL 
Sbjct: 681 PTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALK 740

Query: 325 LYSEMLSKGIRPTVVT 340
           L+ +M+S+G  PT VT
Sbjct: 741 LFEDMISRGNVPTAVT 756



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 172/347 (49%), Gaps = 16/347 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+      P V +  ++   L K+ +++     F+ +   G  P++ TY  +I   
Sbjct: 352 LFDEMVEA-GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGL 410

Query: 63  CKMGRVSPGFVVL-GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            K+GRV+  F ++ G I   CF PD+VT+  L+ G C   R+ EAA L  +L      P+
Sbjct: 411 SKIGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPN 469

Query: 122 VFTYTTLINGLCRTGHTIVALN-LFEE--MANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           +  Y++L+ GLC  G     L+ LFE+   A  N + G+ C        +I  GLCK G 
Sbjct: 470 LQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCC--------SIIVGLCKTGR 521

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYA--NDWNEAKCLFIEMMDQGVQPNVVTF 236
           +D+A  +F +M  E   PD  TY  LI G C +  N    A  L  ++   G  P+ VT+
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTY 581

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +   LCK G++D A ++LE     G   D   Y  L  G C  G+V+RA  LF  M  
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G   D  +Y  +ING  K K++E A   + EM+ KG +PTV TY  
Sbjct: 642 QGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTA 688



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 173/380 (45%), Gaps = 44/380 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+ M   PP       +   L K K       +F ++   G  PD   YN +I+
Sbjct: 209 FEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMID 268

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K G       VL  +L     P  VT+  L+  LC    +  A  LF  + A G +P
Sbjct: 269 GLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRP 328

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +   YT+LI+G  ++G    A +LF+EM           +PD IT++ + DGLCK G  +
Sbjct: 329 NSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG------YRPDVITHTVMIDGLCKSGNFE 382

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A + F +M      P+VVTYT++I+G         A  +   M+  G  P+ VT+  ++
Sbjct: 383 QAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLL 442

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPD--------------ASVYNTLMD---------- 276
           +  CK G++DEA++LL+ + +    P+               SV NTL D          
Sbjct: 443 DGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAE 502

Query: 277 ------------GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE--IEGA 322
                       G C TGR++ A  +F  M S GC  D  +Y ILING C+++E  +E A
Sbjct: 503 NLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERA 562

Query: 323 LSLYSEMLSKGIRPTVVTYN 342
            +L  ++   G  P  VTY 
Sbjct: 563 FALLHDLEMVGYLPDAVTYT 582



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 153/310 (49%), Gaps = 6/310 (1%)

Query: 35  TVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           T +S F+      G   D++TYN L+N        S  + +   +L++   P+  +F  L
Sbjct: 101 TAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNIL 160

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I+      R  +A   F  ++   CKPD+ T+  L++ LC+ G    A  +F EM     
Sbjct: 161 IRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMM---- 216

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
             G V  PD   ++ +   L K   V +A+E+F +M+     PD + Y ++I G   A  
Sbjct: 217 AMGFV-PPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGH 275

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
             EA  +   M+ +   P  VT+ +++N LCK G ++ A  L  +M   G RP++ +Y +
Sbjct: 276 AQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ GF  +GR+  A  LF  M   G   DV ++ ++I+G CK+   E A   + EM+  G
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 334 IRPTVVTYNT 343
            +P VVTY T
Sbjct: 396 CKPNVVTYTT 405



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 158/317 (49%), Gaps = 11/317 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM--GRVSPGF 72
           P +C  +I+ G L K    D    +F+R+ S G  PD  TYNILIN  C+    RV   F
Sbjct: 506 PGLCC-SIIVG-LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAF 563

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  +    + PDAVT+T L  GLC    +  A  +  +  + G   DV  YT L  GL
Sbjct: 564 ALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGL 623

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C  G    A++LF+EM    G       PDA  Y  I +GL K   ++ A + F +M  +
Sbjct: 624 CYQGQVDRAVSLFQEMVRQGG------APDAAAYCCIINGLIKGKKLEDACKFFDEMIGK 677

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKNGKMDE 251
              P V TYT+L++  C+A + +EA   F  M+ +G +  +V+ ++ +++  CK  K+D 
Sbjct: 678 GQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDA 737

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A +L E MI  G  P A    +L DG   +G+  +A+EL   M + G      ++  +++
Sbjct: 738 ALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILD 797

Query: 312 GYCKNKEIEGALSLYSE 328
           G  K+ E    L L  E
Sbjct: 798 GLRKSDESGKLLKLVQE 814


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 179/338 (52%), Gaps = 12/338 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ + G L      +    LFK +   G+ PD+YTY ILI+CF K G +      
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R    P  VT+T+LI       ++  A  LF  + A GC P+V TYT LI+G C+
Sbjct: 547 LDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCK 606

Query: 135 TGHTIVALNLFEEMANGNGEF-----------GVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +G+   A  ++  M  G+ +             V  KP+ +TY  + DGLCK   V  A+
Sbjct: 607 SGNIEKACQIYARM-RGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDAR 665

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L   M  +   P+ + Y +LI GFC A   +EA+ +F +M+++G  PNV T++ +++ L
Sbjct: 666 DLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRL 725

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K+ ++D   ++L  M++    P+  +Y  ++DG     + + A +L + ME  GC  +V
Sbjct: 726 FKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNV 785

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +Y  +I+G+ K  +++  L L+ EM SKG  P  VTY
Sbjct: 786 VTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTY 823



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 20/305 (6%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           FK  N++   P++ TY  L++  CK  +V     +L  +      P+ + + +LI G C 
Sbjct: 633 FKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCK 692

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
            +++ EA  +F K+   G  P+V+TY++LI+ L +     + L +  +M   +      C
Sbjct: 693 AAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENS------C 746

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            P+ + Y+ + DGL K    D+A +L L M+++   P+VVTYT++I GF  A   ++   
Sbjct: 747 APNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLE 806

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           LF EM  +G  PN VT+ V++N  C  G +DEA  LLE M Q       S Y  +++G+ 
Sbjct: 807 LFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGY- 865

Query: 280 LTGRVNRAKELFVSM------ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
                   +E  +S+      E NG    +  Y +LI+ + K   +E AL L+ E++S  
Sbjct: 866 -------KREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISAS 918

Query: 334 IRPTV 338
           +  T 
Sbjct: 919 MSMTA 923



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 147/314 (46%), Gaps = 32/314 (10%)

Query: 30  NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
            K Y+ +LS    LN + +            C C  G+    + V+  ++ + F PD  T
Sbjct: 439 EKAYNEMLSAGTVLNKVNVVS-------FARCLCGFGKFEKAYKVIHEMMGNGFVPDTST 491

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           ++ +I  LC  SR+  A  LF +++  G  PDV+TYT LI+   + G    A N  +EM 
Sbjct: 492 YSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMV 551

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
                    C+P  +TY+T+     K   V  A ELF  M  +   P+V+TYT+LI G+C
Sbjct: 552 RDG------CEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYC 605

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            + +  +A  ++  M      P+V  +  I N                    +  +P+  
Sbjct: 606 KSGNIEKACQIYARMRGDADIPDVDMYFKIKN-------------------NVAEKPNVV 646

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y  L+DG C   +V  A++L  +M  +GC  +   Y  LI+G+CK  +++ A  ++ +M
Sbjct: 647 TYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKM 706

Query: 330 LSKGIRPTVVTYNT 343
           + +G  P V TY++
Sbjct: 707 VERGYNPNVYTYSS 720



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 146/333 (43%), Gaps = 12/333 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC----KMGRVSP 70
           P    +N +   L +   ++  +    R+ S    P++ TY IL+ C C    ++GR   
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL-CGCLNKKQLGRCKR 364

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              ++  I   C+ P    F SL+   C       A  L  K+    CKP    Y  LI 
Sbjct: 365 ILSMM--IAEGCY-PSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIG 421

Query: 131 GLCRTGHTI--VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
            +C  G     V   L E+  N     G V   + +   +    LC  G  +KA ++  +
Sbjct: 422 SICSGGELPGPVTFELAEKAYNEMLSAGTVL--NKVNVVSFARCLCGFGKFEKAYKVIHE 479

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M      PD  TY+ +I   C A+    A  LF EM   GV P+V T+ ++++   K G 
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGI 539

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + +A   L+ M++ G  P    Y TL+  +    +V+ A ELF  M + GC  +V +Y  
Sbjct: 540 IKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTA 599

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           LI+GYCK+  IE A  +Y+ M      P V  Y
Sbjct: 600 LIDGYCKSGNIEKACQIYARMRGDADIPDVDMY 632



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 143/335 (42%), Gaps = 15/335 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     +    DT   + + ++ +GL  D +T        CK+G+       
Sbjct: 239 PTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREA--- 295

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  I +  F P+ + +  +I GLC  S   EA     ++R+  C P+V TY  L+ G C 
Sbjct: 296 LSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCG-CL 354

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               +        M    G     C P    ++++    CK      A +L  KM+    
Sbjct: 355 NKKQLGRCKRILSMMIAEG-----CYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCEC 409

Query: 195 NPDVVTYTSLIRGFCYAND------WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
            P  V Y  LI   C   +      +  A+  + EM+  G   N V        LC  GK
Sbjct: 410 KPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK 469

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
            ++A +++  M+  G  PD S Y+ ++   C   RV  A  LF  M+  G + DV++Y I
Sbjct: 470 FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTI 529

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LI+ + K   I+ A +   EM+  G  PTVVTY T
Sbjct: 530 LIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTT 564



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 29/279 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K+K  D VL +  ++      P++  Y  +I+   K+ +    + +
Sbjct: 713 PNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKL 772

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      P+ VT+T++I G     ++ +   LF ++ + GC P+  TYT LIN  C 
Sbjct: 773 MLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCA 832

Query: 135 TGHTIVALNLFEEMAN--GNGEFGVVCK-------------------------PDAITYS 167
           TGH   A  L EEM            CK                         P  + Y 
Sbjct: 833 TGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYK 892

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVT--YTSLIRGFCYANDWNEAKCLFIEMM 225
            + D   K G ++ A EL  ++   +++       YTSLI  F YA+  + A  LF +M+
Sbjct: 893 VLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMI 952

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
             GV P++ TF  ++  L +  + +EA +L + + Q+ +
Sbjct: 953 RDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQMDI 991



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 3/170 (1%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G  + A E   ++KD    P  +TY +L++ F  A+  + A+ +  EM + G+  + 
Sbjct: 217 CRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDE 276

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T       LCK GK  EA  L+E   +    P+  +YN ++ G C       A +    
Sbjct: 277 FTLGFFAQALCKVGKWREALSLIE---KEDFVPNTILYNKMISGLCEASFFEEAMDFLNR 333

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S  C+ +V +Y IL+ G    K++     + S M+++G  P+   +N+
Sbjct: 334 MRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNS 383



 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 35/200 (17%)

Query: 174 CKEGFVDKAKELFLKMKDENINPD-VVTYTSLIRG-------FCYAND---WNEAKCLFI 222
           C +GF +K   + L+   + +NPD VV   S ++        F +A     ++    ++I
Sbjct: 117 CDDGFGEKT-HIVLRQFRQKLNPDLVVEILSFLKSPELCVKFFLWAGRQIGYDHTPAVYI 175

Query: 223 EMMD------------------QGVQPNVV--TFNVIMNELCKNGKMDEASRLLELMIQI 262
            ++D                  +G    V+    NV++ + C+NG  + A   L  +   
Sbjct: 176 ALLDVFERGSYDRVPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDF 235

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G +P    YN L+  F    +++ A+ +   M   G   D F+ G      CK  +   A
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREA 295

Query: 323 LSLYSEMLSKGIRPTVVTYN 342
           LSL  +   +   P  + YN
Sbjct: 296 LSLIEK---EDFVPNTILYN 312


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 178/338 (52%), Gaps = 12/338 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ + G L      +    LFK +   G+ PD+YTY ILI+CF K G +      
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R    P  VT+T+LI       ++  A  LF  + A GC P+V TYT LI+G C+
Sbjct: 547 LDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCK 606

Query: 135 TGHTIVALNLFEEMANGNGEF-----------GVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +G+   A  ++  M  G+ +             V  KP+ +TY  + DGLCK   V  A+
Sbjct: 607 SGNIEKACQIYARM-RGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDAR 665

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L   M  +   P+ + Y +LI GFC A   +EA+ +F +M++ G  PNV T++ +++ L
Sbjct: 666 DLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRL 725

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K+ ++D   ++L  M++    P+  +Y  ++DG     + + A +L + ME  GC  +V
Sbjct: 726 FKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNV 785

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +Y  +I+G+ K  +++  L L+ EM SKG  P  VTY
Sbjct: 786 VTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTY 823



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 154/301 (51%), Gaps = 20/301 (6%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           FK  N++   P++ TY  L++  CK  +V     +L  +      P+ + + +LI G C 
Sbjct: 633 FKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCK 692

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
            +++ EA  +F K+   G  P+V+TY++LI+ L +     + L +  +M   +      C
Sbjct: 693 AAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENS------C 746

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            P+ + Y+ + DGL K    D+A +L L M+++   P+VVTYT++I GF  A   ++   
Sbjct: 747 APNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLE 806

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           LF EM  +G  PN VT+ V++N  C  G +DEA  LLE M Q       S Y  +++G+ 
Sbjct: 807 LFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGY- 865

Query: 280 LTGRVNRAKELFVSM------ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
                   +E  +S+      E NG    +  Y +LI+ + K   +E AL L+ E++S  
Sbjct: 866 -------KREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISAS 918

Query: 334 I 334
           +
Sbjct: 919 M 919



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 146/314 (46%), Gaps = 32/314 (10%)

Query: 30  NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
            K Y+ +LS    LN + +            C C  G+    + V+  ++ + F PD  T
Sbjct: 439 EKAYNEMLSAGTVLNKVNVVS-------FARCLCGFGKFEKAYKVIHEMMGNGFVPDTST 491

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           ++ +I  LC  SR+  A  LF +++  G  PDV+TYT LI+   + G    A N  +EM 
Sbjct: 492 YSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMV 551

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
                    C+P  +TY+T+     K   V  A ELF  M  +   P+V+TYT+LI G+C
Sbjct: 552 RDG------CEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYC 605

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            + +  +A  ++  M      P+V  +  I N                    +  +P+  
Sbjct: 606 KSGNIEKACQIYARMRGDADIPDVDMYFKIKN-------------------NVAEKPNVV 646

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y  L+DG C   +V  A++L  +M  +GC  +   Y  LI+G+CK  +++ A  ++ +M
Sbjct: 647 TYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKM 706

Query: 330 LSKGIRPTVVTYNT 343
           +  G  P V TY++
Sbjct: 707 VEHGYNPNVYTYSS 720



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 146/333 (43%), Gaps = 12/333 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC----KMGRVSP 70
           P    +N +   L +   ++  +    R+ S    P++ TY IL+ C C    ++GR   
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL-CGCLNKKQLGRCKR 364

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              ++  I   C+ P    F SL+   C       A  L  K+    CKP    Y  LI 
Sbjct: 365 ILSMM--IAEGCY-PSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIG 421

Query: 131 GLCRTGHTI--VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
            +C  G     V   L E+  N     G V   + +   +    LC  G  +KA ++  +
Sbjct: 422 SICSGGELPGPVTFELAEKAYNEMLSAGTVL--NKVNVVSFARCLCGFGKFEKAYKVIHE 479

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M      PD  TY+ +I   C A+    A  LF EM   GV P+V T+ ++++   K G 
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGI 539

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + +A   L+ M++ G  P    Y TL+  +    +V+ A ELF  M + GC  +V +Y  
Sbjct: 540 IKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTA 599

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           LI+GYCK+  IE A  +Y+ M      P V  Y
Sbjct: 600 LIDGYCKSGNIEKACQIYARMRGDADIPDVDMY 632



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 143/335 (42%), Gaps = 15/335 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     +    DT   + + ++ +GL  D +T        CK+G+       
Sbjct: 239 PTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREA--- 295

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  I +  F P+ + +  +I GLC  S   EA     ++R+  C P+V TY  L+ G C 
Sbjct: 296 LSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCG-CL 354

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               +        M    G     C P    ++++    CK      A +L  KM+    
Sbjct: 355 NKKQLGRCKRILSMMIAEG-----CYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCEC 409

Query: 195 NPDVVTYTSLIRGFCYAND------WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
            P  V Y  LI   C   +      +  A+  + EM+  G   N V        LC  GK
Sbjct: 410 KPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK 469

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
            ++A +++  M+  G  PD S Y+ ++   C   RV  A  LF  M+  G + DV++Y I
Sbjct: 470 FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTI 529

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LI+ + K   I+ A +   EM+  G  PTVVTY T
Sbjct: 530 LIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTT 564



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 30/291 (10%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+  H   P V +++ L   L K+K  D VL +  ++      P++  Y  +I+  
Sbjct: 702 VFHKMVE-HGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGL 760

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K+ +    + ++  +      P+ VT+T++I G     ++ +   LF ++ + GC P+ 
Sbjct: 761 SKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNF 820

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMAN--GNGEFGVVCK-------------------- 160
            TYT LIN  C TGH   A  L EEM            CK                    
Sbjct: 821 VTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVE 880

Query: 161 -----PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT--YTSLIRGFCYAND 213
                P  + Y  + D   K G ++ A EL  ++   +++       YTSLI  F YA+ 
Sbjct: 881 KNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASK 940

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
              A  LF +M+  GV P++ TF  ++  L +  + +EA +L + + Q+ +
Sbjct: 941 IGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQMDI 991



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 3/170 (1%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G  + A E   ++KD    P  +TY +L++ F  A+  + A+ +  EM + G+  + 
Sbjct: 217 CRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDE 276

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T       LCK GK  EA  L+E   +    P+  +YN ++ G C       A +    
Sbjct: 277 FTLGFFAQALCKVGKWREALSLIE---KEDFVPNTILYNKMISGLCEASFFEEAMDFLNR 333

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S  C+ +V +Y IL+ G    K++     + S M+++G  P+   +N+
Sbjct: 334 MRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNS 383



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 35/200 (17%)

Query: 174 CKEGFVDKAKELFLKMKDENINPD-VVTYTSLIRG-------FCYAND---WNEAKCLFI 222
           C +GF +K   + L+   + +NPD VV   S ++        F +A     ++    ++I
Sbjct: 117 CDDGFGEKT-HIVLRQFRQKLNPDLVVEILSFLKSPELCVKFFLWAGRQIGYDHTPAVYI 175

Query: 223 EMMD------------------QGVQPNVV--TFNVIMNELCKNGKMDEASRLLELMIQI 262
            ++D                  +G    V+    NV++ + C+NG  + A   L  +   
Sbjct: 176 ALLDVFERGSYDRVPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDF 235

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G +P    YN L+  F    +++ A+ +   M   G   D F+ G      CK  +   A
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREA 295

Query: 323 LSLYSEMLSKGIRPTVVTYN 342
           LSL  +   +   P  + YN
Sbjct: 296 LSLIEK---EDFVPNTILYN 312


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 179/344 (52%), Gaps = 8/344 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + I + ML+   +P    SFNIL    A+ +  D  ++ F+ +      PDL+T+ IL++
Sbjct: 139 YAIHEEMLKAGIAPNTF-SFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVD 197

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTP-DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           C CK G     F V   ++   F P D    T++++ L    R+ EA  +F ++   G  
Sbjct: 198 CLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFP 257

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD   Y T+I+GL + GH   AL + + M          C P  +TY  + + LCK G +
Sbjct: 258 PDAIAYNTMIDGLAKAGHAQEALKVLDNM------LAKACVPTEVTYGILVNSLCKAGTL 311

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           ++A+ELF  M      P+ V YTSLI GF  +    EA  LF EM++ G +P+V+T  V+
Sbjct: 312 ERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVM 371

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LCK+G  ++A++  E M++ G +P+   Y T++ G    GRV  A  +   M ++GC
Sbjct: 372 IDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGC 431

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             D  +Y  L++G+CK   ++ A  L  E+      P +  Y++
Sbjct: 432 FPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSS 475



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 171/368 (46%), Gaps = 44/368 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++N +   LAK  H    L +   + +    P   TY IL+N  CK G +     
Sbjct: 257 PPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEE 316

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S F P++V +TSLI G     R+ EA +LF ++   G +PDV T+T +I+GLC
Sbjct: 317 LFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLC 376

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           ++G+   A   FEEM  G       CKP+ +TY+TI  GL K G V  A  +   M    
Sbjct: 377 KSGNFEQAAKSFEEMMRGG------CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHG 430

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN------------ 241
             PD VTY  L+ GFC     +EA  L  E+      PN+  ++ ++N            
Sbjct: 431 CFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTL 490

Query: 242 ------------------------ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
                                    LCK G++DEA R+ + M+  G +PDA+ YN L++G
Sbjct: 491 DDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING 550

Query: 278 FCLT--GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            C +   RV RA  L   +E  G + D  +Y  L  G CK  E++ A+ +  E  S+G  
Sbjct: 551 LCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWN 610

Query: 336 PTVVTYNT 343
             VV Y  
Sbjct: 611 ADVVAYTA 618



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 182/376 (48%), Gaps = 46/376 (12%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ M+R     P V ++  +   L+K         + K + + G FPD  TY  L++ FC
Sbjct: 388 FEEMMR-GGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFC 446

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC-------------------AES--- 101
           K+GR+     +L  + +   +P+   ++SL+ GLC                   AE+   
Sbjct: 447 KLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDP 506

Query: 102 --------------RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV--ALNLF 145
                         R+ EA  +F ++ + GCKPD  TY  LINGLCR+    V  A  L 
Sbjct: 507 GLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALL 566

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
            ++        V   PDA+TY+ +  GLCK G VD+A ++  +      N DVV YT+L 
Sbjct: 567 HDLEK------VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALC 620

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            G CY    + A  LF EM+ QG  P+   +  I+N L K  K+++A +  + MI  G +
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQK 680

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNG-CMRDVFSYGILINGYCKNKEIEGALS 324
           P  + Y  L+   C  G V+ A   F SM + G  +  V  Y  LI+G+CK  +++ AL 
Sbjct: 681 PTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALK 740

Query: 325 LYSEMLSKGIRPTVVT 340
           L+ +M+S+G  PT VT
Sbjct: 741 LFEDMISRGNVPTAVT 756



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 169/347 (48%), Gaps = 16/347 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+      P V +  ++   L K+ +++     F+ +   G  P++ TY  +I   
Sbjct: 352 LFDEMVEA-GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGL 410

Query: 63  CKMGRVSPGFVVL-GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            K+GRV+  F ++ G I   CF PD+VT+  L+ G C   R+ EAA L  +L      P+
Sbjct: 411 SKIGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPN 469

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF---GVVCKPDAITYSTITDGLCKEGF 178
           +  Y++L+NGLC  G     L+   E +    E    G+ C        +I  GLCK G 
Sbjct: 470 LQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCC--------SIIVGLCKTGR 521

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYA--NDWNEAKCLFIEMMDQGVQPNVVTF 236
           +D+A  +F +M  E   PD  TY  LI G C +  N    A  L  ++   G  P+ VT+
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTY 581

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +   LCK G++D A ++LE     G   D   Y  L  G C  G+V+RA  LF  M  
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G   D  +Y  +ING  K K++E A   + EM+ KG +PTV TY  
Sbjct: 642 QGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTA 688



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 174/380 (45%), Gaps = 44/380 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+ M   PP       +   L K K       +F ++   G  PD   YN +I+
Sbjct: 209 FEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMID 268

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K G       VL  +L     P  VT+  L+  LC    +  A  LF  + A G +P
Sbjct: 269 GLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRP 328

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +   YT+LI+G  ++G    A +LF+EM           +PD IT++ + DGLCK G  +
Sbjct: 329 NSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG------YRPDVITHTVMIDGLCKSGNFE 382

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A + F +M      P+VVTYT++I+G         A  +   M+  G  P+ VT+  ++
Sbjct: 383 QAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLL 442

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD------------------------ 276
           +  CK G++DEA++LL+ + +    P+  +Y++L++                        
Sbjct: 443 DGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAE 502

Query: 277 ------------GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE--IEGA 322
                       G C TGR++ A  +F  M S GC  D  +Y ILING C+++E  +E A
Sbjct: 503 TLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERA 562

Query: 323 LSLYSEMLSKGIRPTVVTYN 342
            +L  ++   G  P  VTY 
Sbjct: 563 FALLHDLEKVGYLPDAVTYT 582



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 153/310 (49%), Gaps = 6/310 (1%)

Query: 35  TVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           T +S F+      G   D++TYN L+N        S  + +   +L++   P+  +F  L
Sbjct: 101 TAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNIL 160

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I+      R  +A   F  ++   CKPD+ T+  L++ LC+ G    A  +F EM     
Sbjct: 161 IRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMM---- 216

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
             G V  PD   ++ +   L K   V +A+E+F +M+     PD + Y ++I G   A  
Sbjct: 217 AMGFV-PPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGH 275

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
             EA  +   M+ +   P  VT+ +++N LCK G ++ A  L  +M   G RP++ +Y +
Sbjct: 276 AQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ GF  +GR+  A  LF  M   G   DV ++ ++I+G CK+   E A   + EM+  G
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 334 IRPTVVTYNT 343
            +P VVTY T
Sbjct: 396 CKPNVVTYTT 405



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 159/317 (50%), Gaps = 11/317 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM--GRVSPGF 72
           P +C  +I+ G L K    D    +F+R+ S G  PD  TYNILIN  C+    RV   F
Sbjct: 506 PGLCC-SIIVG-LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAF 563

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  + +  + PDAVT+T L  GLC    +  A  +  +  + G   DV  YT L  GL
Sbjct: 564 ALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGL 623

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C  G    A++LF+EM    G       PDA  Y  I +GL K   ++ A + F +M  +
Sbjct: 624 CYQGQVDRAVSLFQEMVRQGG------APDAAAYCCIINGLIKVKKLEDACKFFDEMIGK 677

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKNGKMDE 251
              P V TYT+L++  C+A + +EA   F  M+ +G +  +V+ ++ +++  CK  K+D 
Sbjct: 678 GQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDA 737

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A +L E MI  G  P A    +L DG   +G+  +A+EL   M + G      ++  +++
Sbjct: 738 ALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILD 797

Query: 312 GYCKNKEIEGALSLYSE 328
           G  K+ E    L L  E
Sbjct: 798 GLRKSDESGKLLKLVQE 814


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 188/345 (54%), Gaps = 10/345 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNS---IGLFPDLYTYNI 57
           F +F  M   +P  P +  FN +   +AK + YD V++L+KR+ +   I + PDLYT NI
Sbjct: 70  FHLFVLMAYSYP-LPSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNI 128

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           L+NCFC+  + S     LG++++    PD VT +SL+ G C  + I +A  +  ++   G
Sbjct: 129 LVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMG 188

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
            K DV   T LI+ LC+    + AL + + M +          P+ +TYS++  GLCK G
Sbjct: 189 IKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRG------ISPNVVTYSSLITGLCKSG 242

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            +  A+    +M  + INP+V+T+++LI  +      ++   ++  M+   + PNV T++
Sbjct: 243 RLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYS 302

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            ++  LC + ++DEA ++L+LMI  G  P+   Y+TL +GF  + RV+   +L   M   
Sbjct: 303 SLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQR 362

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G   +  S   LI GY +  +I+ AL ++  M S G+ P + +YN
Sbjct: 363 GVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYN 407



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 6/289 (2%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           IL   L KN+     L + KR+   G+ P++ TY+ LI   CK GR++     L  +   
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 257

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
              P+ +TF++LI       ++ +  +++  +      P+VFTY++LI GLC       A
Sbjct: 258 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 317

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
           + + + M +        C P+ +TYST+ +G  K   VD   +L   M    +  + V+ 
Sbjct: 318 IKMLDLMISKG------CTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSC 371

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            +LI+G+  A   + A  +F  M   G+ PN+ ++N+++  L  NG++++A    E M +
Sbjct: 372 NTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQK 431

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
                D   Y  ++ G C    V  A +LF  ++      D  +Y I+I
Sbjct: 432 TRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMI 480



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 29/270 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K+            ++S  + P++ T++ LI+ + K G++S    V
Sbjct: 226 PNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSV 285

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    P+  T++SLI GLC  +R+ EA  +   + + GC P+V TY+TL NG  +
Sbjct: 286 YKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFK 345

Query: 135 TGHTIVALNLFEEMANGN-------------------------GEFGVVCK----PDAIT 165
           +      + L ++M                             G FG +      P+  +
Sbjct: 346 SSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRS 405

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  GL   G V+KA   F  M+    + D++TYT +I G C A    EA  LF ++ 
Sbjct: 406 YNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLK 465

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
            + V+P+   + +++ EL + G   EA  L
Sbjct: 466 FKRVEPDFKAYTIMIAELNRAGMRTEADAL 495



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 38/183 (20%)

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD-------- 250
           + Y  ++R   +   +++A  LF+ M      P++V FN ++  + K    D        
Sbjct: 51  IDYREVLRSGLHNIKFDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQMYDVVINLWKR 110

Query: 251 ------------------------------EASRLLELMIQIGVRPDASVYNTLMDGFCL 280
                                          A   L  M+++G+ PD    ++L++GFCL
Sbjct: 111 IENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCL 170

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +  +  A  +   ME  G  RDV    ILI+  CKN+ +  AL +   M  +GI P VVT
Sbjct: 171 SNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVT 230

Query: 341 YNT 343
           Y++
Sbjct: 231 YSS 233


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/383 (31%), Positives = 189/383 (49%), Gaps = 46/383 (12%)

Query: 3   IFDYMLRMHPS----PPPVCSFNILFGCLAKNKHYDTV--LSLFKRLNSIGLFPDLYTYN 56
           +FD +LR           + S N     +A++     V   +   R +   + P L+TY 
Sbjct: 43  VFDELLRQGRGGGGGASIIRSLNRALAAVARDSPAAAVSGFNRMARSSDGAVTPTLHTYG 102

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRA 115
           ILI C C+ GR+  GF  LG +++  +  + + FT L+K LCAE R   A  +   ++  
Sbjct: 103 ILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTE 162

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
            GC P VF+Y  L+ GLC    +  AL L   MA+  G+    C PD ++YSTI DGL K
Sbjct: 163 LGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGD----CPPDVVSYSTIIDGLFK 218

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYT--------------------------------- 202
           EG  DKA   + +M +  I PDVVTY                                  
Sbjct: 219 EGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCIT 278

Query: 203 --SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
             S++ G+C +    EA  +  +M   GV+P+ VT+  +M+ LCKNG+  EA ++L+ MI
Sbjct: 279 YNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMI 338

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + G++P+   Y+TL+ G+   G +   ++L   M  NG   D   + ILI    K++ ++
Sbjct: 339 KRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVD 398

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A+ ++S+M  + + P VVTY T
Sbjct: 399 VAMFVFSKMRQQRLTPDVVTYGT 421



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 126/244 (51%), Gaps = 6/244 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S++ +   L K    D   S +  +   G+ PD+ TYN ++   CK   +     
Sbjct: 203 PPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMD 262

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL R++++   PD +T+ S++ G C+  +  EA  +  K+ + G +PD  TYT+L++ LC
Sbjct: 263 VLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLC 322

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G  I A  + + M           KP+ ITYST+  G   +G + + ++L   M    
Sbjct: 323 KNGRCIEARKILDSMIKRG------LKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNG 376

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I PD   ++ LI       + + A  +F +M  Q + P+VVT+  +++ LCK+G++D+A 
Sbjct: 377 IQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAM 436

Query: 254 RLLE 257
             LE
Sbjct: 437 LNLE 440


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 178/330 (53%), Gaps = 8/330 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP +  FN+L     K         +F  +   GL P + ++N LI+  CK G V  GF 
Sbjct: 245 PPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFR 304

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + G +      PD  TF++LI GLC E R+ E + LF ++   G  P+  T+TTLI+G C
Sbjct: 305 LKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQC 364

Query: 134 RTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           + G   +AL  F+ M A G        +PD +TY+ + +GLCK G + +A+ L  +M   
Sbjct: 365 KGGKVDLALKNFQMMLAQG-------VRPDLVTYNALINGLCKVGDLKEARRLVNEMTAS 417

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PD +T+T+LI G C   D   A  +   M+++G++ + V F  +++ LC+ G++ +A
Sbjct: 418 GLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDA 477

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            R+L  M+  G +PD   Y  ++D FC  G V    +L   M+S+G +  V +Y  L+NG
Sbjct: 478 GRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNG 537

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            CK  +++ A  L   ML+ G+ P  +TYN
Sbjct: 538 LCKQGQMKNAKMLLDAMLNVGVAPNDITYN 567



 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 163/306 (53%), Gaps = 6/306 (1%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           +L+  +   G  P +Y +N+L++ FCK G V    +V   I +    P  V+F +LI G 
Sbjct: 234 ALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGC 293

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C    + E   L   + + G  PDVFT++ LINGLC+ G       LF+EM       G+
Sbjct: 294 CKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGR----GL 349

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           V  P+ +T++T+ DG CK G VD A + F  M  + + PD+VTY +LI G C   D  EA
Sbjct: 350 V--PNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEA 407

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           + L  EM   G++P+ +TF  +++  CK+G M+ A  +   M++ G+  D   +  L+ G
Sbjct: 408 RRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISG 467

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  GRV+ A  +   M S G   D  +Y ++I+ +CK  +++    L  EM S G  P 
Sbjct: 468 LCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPG 527

Query: 338 VVTYNT 343
           VVTYN 
Sbjct: 528 VVTYNA 533



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 159/302 (52%), Gaps = 6/302 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K+   +    L   + S G+ PD++T++ LIN  CK GR+  G ++
Sbjct: 281 PTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLL 340

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+ VTFT+LI G C   ++  A   F  + A G +PD+ TY  LINGLC+
Sbjct: 341 FDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCK 400

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  EM           KPD IT++T+ DG CK+G ++ A E+  +M +E I
Sbjct: 401 VGDLKEARRLVNEMTASG------LKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGI 454

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V +T+LI G C     ++A  +  +M+  G +P+  T+ ++++  CK G +    +
Sbjct: 455 ELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFK 514

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M   G  P    YN LM+G C  G++  AK L  +M + G   +  +Y IL++G+ 
Sbjct: 515 LLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHS 574

Query: 315 KN 316
           K+
Sbjct: 575 KH 576



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L     K    D  L  F+ + + G+ PDL TYN LIN  CK+G +     +
Sbjct: 351 PNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRL 410

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  S   PD +TFT+LI G C +  +  A  +  ++   G + D   +T LI+GLCR
Sbjct: 411 VNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCR 470

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +  +M +         KPD  TY+ + D  CK+G V    +L  +M+ +  
Sbjct: 471 EGRVHDAGRMLTDMLSAG------FKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGH 524

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            P VVTY +L+ G C       AK L   M++ GV PN +T+N++++   K+G
Sbjct: 525 VPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHG 577



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 98/165 (59%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           ++++  L+L++ D    P +  +  L+ GFC A D   A+ +F E+  +G++P VV+FN 
Sbjct: 229 IERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNT 288

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++  CK+G ++E  RL  +M   GV PD   ++ L++G C  GR++    LF  M   G
Sbjct: 289 LISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRG 348

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + +  ++  LI+G CK  +++ AL  +  ML++G+RP +VTYN 
Sbjct: 349 LVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 393



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +F  L   L +         +   + S G  PD  TY ++I+CFCK G V  GF +L  +
Sbjct: 460 AFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEM 519

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P  VT+ +L+ GLC + ++  A  L   +   G  P+  TY  L++G  + G +
Sbjct: 520 QSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSS 579

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
            V +++F      N E G+V   D  +Y+ + +
Sbjct: 580 -VDVDIF------NSEKGLVT--DYASYTALVN 603


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 175/338 (51%), Gaps = 11/338 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ + G L      +    LF+ +   G+ PD+Y Y  LI+ FCK G +      
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R    P+ VT+T+LI       ++ +A  ++  + + GC P++ TYT LI+GLC+
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCK 339

Query: 135 TGHTIVALNLFEEMANGNGEF-----------GVVCKPDAITYSTITDGLCKEGFVDKAK 183
            G    A  +++ M   N E            G   +P+  TY  + DGLCK   V +A+
Sbjct: 340 AGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEAR 399

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L   M  E   P+ V Y +LI G C A   +EA+ +F  M++ G  PNV T++ +++ L
Sbjct: 400 DLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRL 459

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K+ ++D A ++L  M++    P+  +Y  ++DG C  G+ + A +L V ME  GC  +V
Sbjct: 460 FKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNV 519

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +Y  +I+G+ K+  +E  L L  +M SKG  P  VTY
Sbjct: 520 VTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTY 557



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 172/357 (48%), Gaps = 35/357 (9%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           +PSP     FN L     ++  Y     L K++   G  P    YNILI   C      P
Sbjct: 109 YPSPRI---FNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGIC--SSEEP 163

Query: 71  GFVVL-------GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           G  VL       G +L +    + V  ++  + LC   +  +A  +  ++ + G  PD  
Sbjct: 164 GKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTS 223

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY+ +I  LC       A  LF+EM   NG       PD   Y+T+ D  CK GF+++A+
Sbjct: 224 TYSKVIGYLCNASKVEKAFQLFQEMKR-NG-----IAPDVYVYTTLIDSFCKAGFIEQAR 277

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
             F +M+ +   P+VVTYT+LI  +  +   ++A  ++  M+ +G  PN+VT+  +++ L
Sbjct: 278 NWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGL 337

Query: 244 CKNGKMDEASRLLELMIQIGVR-----------------PDASVYNTLMDGFCLTGRVNR 286
           CK GK+++AS++ ++M +  V                  P+   Y  L+DG C   +V  
Sbjct: 338 CKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKE 397

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A++L  SM   GC  +   Y  LI+G CK  +++ A  +++ ML  G  P V TY++
Sbjct: 398 ARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSS 454



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 158/341 (46%), Gaps = 49/341 (14%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           ++++G   D +T     +  CK G+      +L +     F PD V +T +I GLC  S 
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLEK---EEFVPDTVLYTKMISGLCEASL 57

Query: 103 IMEAAALFTKLRAFGCKPDVFTY-----------------------------------TT 127
             EA    T++RA  C P+V TY                                    +
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK-----EGFVDKA 182
           L++  CR+G    A  L ++M          C+P  + Y+ +  G+C      +  +D A
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCG------CQPGYVVYNILIGGICSSEEPGKDVLDLA 171

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           ++ + +M +  +  + V  ++  R  C    + +A  +  EMM +G  P+  T++ ++  
Sbjct: 172 EKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGY 231

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC   K+++A +L + M + G+ PD  VY TL+D FC  G + +A+  F  ME +GC  +
Sbjct: 232 LCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPN 291

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +Y  LI+ Y K++++  A  +Y  MLSKG  P +VTY  
Sbjct: 292 VVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTA 332



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 153/296 (51%), Gaps = 16/296 (5%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F+ ++     P+++TY  L++  CK  +V     +L  +      P+ V + +LI G C 
Sbjct: 367 FRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCK 426

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             ++ EA  +FT +   G  P+V+TY++LI+ L +     +AL +  +M   +      C
Sbjct: 427 AGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENS------C 480

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            P+ + Y+ + DGLCK G  D+A +L + M+++  NP+VVTYT++I GF  +    +   
Sbjct: 481 APNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLE 540

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  +M  +G  PN VT+ V++N  C  G +DEA +LLE M Q       + Y  +++GF 
Sbjct: 541 LLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGF- 599

Query: 280 LTGRVNRA--KELFVSME--SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
                NR     L++S E   N  +     Y +LI+ + K   +E AL L  E+ S
Sbjct: 600 -----NREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSS 650



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 150/328 (45%), Gaps = 15/328 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC----KMGRVSP 70
           P    +  +   L +   ++  +    R+ +    P++ TY IL+ C C    K+GR   
Sbjct: 40  PDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILL-CGCLNKEKLGRCKR 98

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              ++  I   C+ P    F SL+   C       A  L  K+   GC+P    Y  LI 
Sbjct: 99  ILSMM--ITEGCY-PSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIG 155

Query: 131 GLCRT---GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           G+C +   G  +  L+L E+      E GVV   + +  S  +  LC  G  +KA  +  
Sbjct: 156 GICSSEEPGKDV--LDLAEKAYGEMLEAGVVL--NKVNISNFSRCLCGIGKFEKAYNVIR 211

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M  +   PD  TY+ +I   C A+   +A  LF EM   G+ P+V  +  +++  CK G
Sbjct: 212 EMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAG 271

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            +++A    + M + G  P+   Y  L+  +  + +V++A E++  M S GC  ++ +Y 
Sbjct: 272 FIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYT 331

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIR 335
            LI+G CK  +IE A  +Y  M  + + 
Sbjct: 332 ALIDGLCKAGKIEKASQIYKIMKKENVE 359



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 127/313 (40%), Gaps = 45/313 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K+K  D  L +  ++      P++  Y  +I+  CK+G+    + +
Sbjct: 447 PNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL 506

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      P+ VT+T++I G     R+ +   L  ++ + GC P+  TY  LIN  C 
Sbjct: 507 MVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCS 566

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    A  L EEM                          K+ +  +             
Sbjct: 567 TGLLDEAHKLLEEM--------------------------KQTYWPR------------- 587

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              V  Y  +I GF    ++  +  L  E+ +    P    + V+++   K G+++ A  
Sbjct: 588 --HVAGYRKVIEGF--NREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALE 643

Query: 255 LLELMIQIG--VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           L E +         + +++ TL++   L  + ++A EL+  M S G + ++     LI G
Sbjct: 644 LNEELSSFSPFSAANQNIHITLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKG 703

Query: 313 YCKNKEIEGALSL 325
             +    E AL L
Sbjct: 704 LLRVNRWEEALQL 716


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 191/380 (50%), Gaps = 45/380 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P+L TY ILI
Sbjct: 41  VFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTYGILI 98

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
              C  GR+  GF  LG +++  F  DA+ FT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 99  GSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGC 158

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF+Y  L+ GLC    +  AL L + M +  G+    C PD ++Y+T+ +G  KEG 
Sbjct: 159 IPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFFKEGD 214

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLI--------------------------------- 205
           +DKA   + +M D  I P+VVTY+S+I                                 
Sbjct: 215 LDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 206 --RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
              G+C +    EA     +M   GV+P+VVT+N +M+ LCKNG+  EA ++ + M + G
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           ++P+ + Y TL+ G+   G +     L   M  NG   + + + ILI  Y K  +++ A+
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            ++S+M  +G+ P  VTY T
Sbjct: 395 LVFSKMRQQGLNPDTVTYGT 414



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 11/291 (3%)

Query: 7   MLRMHPS-----PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +L+M P      PP V S+  +     K    D     +  +   G+ P++ TY+ +I  
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAA 243

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK   +     VL  ++++   P+  T+ S++ G C+  +  EA     K+ + G +PD
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V TY +L++ LC+ G    A  +F+ M           KP+  TY T+  G   +G + +
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRG------LKPEITTYGTLLQGYATKGALVE 357

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
              L   M    I+P+   ++ LI  +      ++A  +F +M  QG+ P+ VT+  ++ 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
            LCK+G++++A R  E MI   + P   VYN+L+   C+  + ++AK+ F+
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYFL 468



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 29/238 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L K +  D  + +   +   G+ P+  TYN +++ +C  G+       
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT+ SL+  LC   R  EA  +F  +   G KP++ TY TL+ G   
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 135 TGHTIVALNLFEEMANGN---------------GEFGVVCK--------------PDAIT 165
            G  +    L + M                    + G V +              PD +T
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           Y T+   LCK G V+ A   F +M DE ++P  + Y SLI   C  + W++AK  F++
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYFLK 469



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 10/126 (7%)

Query: 3   IFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + D M+R  +HP+      F+IL    AK    D  + +F ++   GL PD  TY  +I 
Sbjct: 361 LLDLMVRNGIHPNH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK GRV        +++    +P  + + SLI  LC   +  +A   F K     C  
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYFLK-----CWI 472

Query: 121 DVFTYT 126
           + F +T
Sbjct: 473 EAFVWT 478



 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG---VRPDASVY 271
            +A+ +F E++ +G   ++   N  + ++ ++      SR    M + G   V P+   Y
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRY-NRMARAGADEVTPNLCTY 94

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL-YSEML 330
             L+   C  GR++       ++   G   D  ++  L+ G C +K    A+ +    M 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 331 SKGIRPTVVTYN 342
             G  P V +YN
Sbjct: 155 QLGCIPNVFSYN 166


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 178/334 (53%), Gaps = 35/334 (10%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           M+   P +  F  +F  L K  H+ TV+SL  ++   G+  DL   NIL+NCFC +G+V 
Sbjct: 1   MNNPTPTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQV- 59

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
                                       C   ++ E       + A G + +  +Y TLI
Sbjct: 60  ----------------------------CLNDKVKETLHFHDDVIAKGFQLNQVSYGTLI 91

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           +GLC+ G T  A+ +   +       G++ +P+ + YSTI   LCK+  V  A +L+ +M
Sbjct: 92  DGLCKAGETRAAMQVLRNID------GLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQM 145

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
             + I+PDV+TY +L+ G        EA  LF +M+ + ++P++ TFN++++ LCK G+M
Sbjct: 146 LLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEM 205

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +A  +L +MI+  V PD   YN+LMDG+ L  + N+A  +F +M   G   DV SY ++
Sbjct: 206 KKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVM 265

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ING CK K ++ A++L  EM SK + P  VTY++
Sbjct: 266 INGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSS 299



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 177/334 (52%), Gaps = 21/334 (6%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F ++  ML    SP  +    +++GCL   +  + V  LF ++    + PD+YT+NIL++
Sbjct: 139 FDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAV-GLFNQMLLKNIKPDIYTFNILVD 197

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G +     VL  +++    PD +T+ SL+ G     +  +A  +F  +   G  P
Sbjct: 198 GLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTP 257

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV +Y+ +INGLC+T     A+NL +EM + +        P+ +TYS++ DGL K G + 
Sbjct: 258 DVHSYSVMINGLCKTKMVDEAVNLLKEMHSKS------MAPNTVTYSSLIDGLHKSGRIF 311

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A +L  +M +     DV+TY SL+   C  +  ++A  L  ++ DQG+QP++ T+ +++
Sbjct: 312 DAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILV 371

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCKNG++ +A  + +++              L+ G+ L    ++A  L   ME NGC 
Sbjct: 372 DGLCKNGRLKDAQEVYQIL--------------LIKGYHLDSLFDKALSLLSKMEDNGCT 417

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            +  ++ ILI    +N   + A+ L  EM+++G+
Sbjct: 418 PNPVTFEILIRALFENDMNDKAVELLREMIARGL 451


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 186/342 (54%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD ML+     P + +FN L   L K  +      LF ++   G+ P+L+T+NI I 
Sbjct: 201 YHLFDEMLK-QGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQ 259

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ G +     +L  I+    TPD +++ +LI G C  S+++EA     K+   G +P
Sbjct: 260 GLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEP 319

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           + FTY T+ING C+ G    A  +  +        G +  PD  TYS++ +GLC +G ++
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFK----GFI--PDEFTYSSLINGLCNDGDMN 373

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  +F +  ++     ++ Y +L++G        +A  L  +MM+ G  P++ T+N+++
Sbjct: 374 RAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVV 433

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N LCK G + +A+ +L   I  G  PD   +NTL+DG+C    +++A E+  +M S+G  
Sbjct: 434 NGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGIT 493

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            DV +Y  L+NG CK ++++  +  +  ML KG  P ++TYN
Sbjct: 494 PDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYN 535



 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 173/335 (51%), Gaps = 11/335 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDT-----VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           P   C FN +  C   +  Y          LF  +   G+ PD+ T+N LI+  CK G V
Sbjct: 173 PGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNV 232

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +  ++++    P+  TF   I+GLC +  I EAA L   + + G  PDV +Y TL
Sbjct: 233 QESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTL 292

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I G C+    + A     +M N   E      P+  TY+TI +G CK G +  A ++   
Sbjct: 293 ICGFCKHSKLVEAECYLHKMVNSGVE------PNEFTYNTIINGFCKAGMMQNADKILRD 346

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
              +   PD  TY+SLI G C   D N A  +F E M++G + +++ +N ++  L K G 
Sbjct: 347 AMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGL 406

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + +A +L++ M++ G  PD   YN +++G C  G ++ A  +     + GC+ D+F++  
Sbjct: 407 VLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNT 466

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LI+GYCK + ++ A+ +   MLS GI P V+TYNT
Sbjct: 467 LIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNT 501



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 182/392 (46%), Gaps = 67/392 (17%)

Query: 15  PPVCSFNILF-GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V S+N L  G    +K  +    L K +NS G+ P+ +TYN +IN FCK G +     
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNS-GVEPNEFTYNTIINGFCKAGMMQNADK 342

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L   +   F PD  T++SLI GLC +  +  A A+F +    G K  +  Y TL+ GL 
Sbjct: 343 ILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLS 402

Query: 134 RTGHTIVALNLFEEM---------------------------ANG--NGEFGVVCKPDAI 164
           + G  + AL L ++M                           ANG  N      C PD  
Sbjct: 403 KQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIF 462

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T++T+ DG CK+  +DKA E+   M    I PDV+TY +L+ G C A   +     F  M
Sbjct: 463 TFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAM 522

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +++G  PN++T+N+++   CK+ K+ EA  L + M   G+ PD     TL+ G C  G +
Sbjct: 523 LEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGEL 582

Query: 285 NRAKELFVSMES------------------------------------NGCMRDVFSYGI 308
           ++A ELFV++E                                     + C  D ++Y +
Sbjct: 583 DKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRV 642

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +I+ YCK   I+ A +   E +SKG+ P+  T
Sbjct: 643 MIDSYCKTGNIDLAHTFLLENISKGLVPSFTT 674



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 161/308 (52%), Gaps = 6/308 (1%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            +++F+R++     P + +YN ++N   + G  S    V  R+      PD  T T  +K
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMK 154

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
             C   R   A  L   +   GC+ +  +Y  +I+G  +    I A +LF+EM       
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG--- 211

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
             +C PD +T++ +   LCK+G V ++++LF K+    + P++ T+   I+G C     +
Sbjct: 212 --IC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAID 268

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA  L   ++ +G+ P+V+++N ++   CK+ K+ EA   L  M+  GV P+   YNT++
Sbjct: 269 EAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTII 328

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +GFC  G +  A ++       G + D F+Y  LING C + ++  A++++ E + KG +
Sbjct: 329 NGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFK 388

Query: 336 PTVVTYNT 343
            +++ YNT
Sbjct: 389 HSIILYNT 396



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 154/321 (47%), Gaps = 7/321 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L   L+K       L L K +   G  PD++TYN+++N  CKMG +S    +L   +
Sbjct: 394 YNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAI 453

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                PD  TF +LI G C +  + +A  +   + + G  PDV TY TL+NGLC+     
Sbjct: 454 AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLD 513

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
             ++ F+ M          C P+ ITY+ + +  CK+  V +A ELF +MK   + PD+V
Sbjct: 514 NVVDTFKAMLEKG------CTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIV 567

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           T  +LI G C   + ++A  LF+ +  +     +   FN+++N  C    +  A +L   
Sbjct: 568 TLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHK 627

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M      PD   Y  ++D +C TG ++ A    +   S G +    + G ++N  C    
Sbjct: 628 MGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHR 687

Query: 319 IEGALSLYSEMLSKGIRPTVV 339
           +  A+ + + M+  GI P  V
Sbjct: 688 LSEAVVIINLMVQNGIVPEEV 708



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 129/254 (50%), Gaps = 6/254 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           +  +++    + ++ EA  +F ++  + C+P V +Y  ++N L   G+   A  ++  M 
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMK 138

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
               + G+   PD  T++      C  G    A  L   M  +    + V+Y ++I GF 
Sbjct: 139 ----DIGIY--PDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFY 192

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
             N   EA  LF EM+ QG+ P+++TFN +++ LCK G + E+ +L   +++ GV P+  
Sbjct: 193 KENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLF 252

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            +N  + G C  G ++ A  L  S+ S G   DV SY  LI G+CK+ ++  A     +M
Sbjct: 253 TFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312

Query: 330 LSKGIRPTVVTYNT 343
           ++ G+ P   TYNT
Sbjct: 313 VNSGVEPNEFTYNT 326



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 15/258 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L     K ++ D  + +   + S G+ PD+ TYN L+N  CK  ++      
Sbjct: 459 PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDT 518

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L    TP+ +T+  LI+  C + ++ EA  LF +++  G  PD+ T  TLI GLC 
Sbjct: 519 FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCS 578

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYST-----ITDGLCKEGFVDKAKELFLKM 189
            G    A  LF  +           K    +YST     + +  C +  V  A++LF KM
Sbjct: 579 NGELDKAYELFVTIE----------KEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKM 628

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
              +  PD  TY  +I  +C   + + A    +E + +G+ P+  T   ++N LC   ++
Sbjct: 629 GGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRL 688

Query: 250 DEASRLLELMIQIGVRPD 267
            EA  ++ LM+Q G+ P+
Sbjct: 689 SEAVVIINLMVQNGIVPE 706



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 107/237 (45%), Gaps = 16/237 (6%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I D ML  H   P V ++N L   L K +  D V+  FK +   G  P++ TYNILI  F
Sbjct: 483 ILDTMLS-HGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESF 541

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  +VS    +   +     TPD VT  +LI GLC+   + +A  LF  +     K   
Sbjct: 542 CKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIE----KEYK 597

Query: 123 FTYTT-----LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           F+Y+T     +IN  C   +  +A  LF +M       G  C PD  TY  + D  CK G
Sbjct: 598 FSYSTAIFNIMINAFCXKLNVSMAEKLFHKMG------GSDCAPDNYTYRVMIDSYCKTG 651

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
            +D A    L+   + + P   T   ++   C  +  +EA  +   M+  G+ P  V
Sbjct: 652 NIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEV 708



 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 210 YANDWNEAKCLFIEM-MDQGVQPNVVTFNVIMNELCKNGKMDEASRLL-ELMIQIGVRPD 267
           Y ND   A  +F ++  + G +  + T+  ++ +L  +GK +    +L E+   +  +  
Sbjct: 16  YQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKML 75

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
             VY  +M  +   G+V  A  +F  M+   C   V SY  ++N   +      A  +Y 
Sbjct: 76  EGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYM 135

Query: 328 EMLSKGIRPTVVTY 341
            M   GI P V T+
Sbjct: 136 RMKDIGIYPDVYTH 149


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 186/342 (54%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD ML+    P  + +FN L   L K  +      LF ++   G+ P+L+T+NI I 
Sbjct: 201 YHLFDEMLKQGICPD-ILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQ 259

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ G +     +L  I+    TPD +++ +LI G C  S+++EA     K+   G +P
Sbjct: 260 GLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEP 319

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           + FTY T+ING C+ G    A  +  +        G +  PD  TYS++ +GLC +G ++
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFK----GFI--PDEFTYSSLINGLCNDGDMN 373

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  +F +  ++     ++ Y +L++G        +A  L  +MM+ G  P++ T+N+++
Sbjct: 374 RAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVV 433

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N LCK G + +A+ +L   I  G  PD   +NTL+DG+C    +++A E+  +M S+G  
Sbjct: 434 NGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGIT 493

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            DV +Y  L+NG CK ++++  +  +  ML KG  P ++TYN
Sbjct: 494 PDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYN 535



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 173/335 (51%), Gaps = 11/335 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDT-----VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           P   C FN +  C   +  Y          LF  +   G+ PD+ T+N LI+  CK G V
Sbjct: 173 PGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNV 232

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +  ++++    P+  TF   I+GLC +  I EAA L   + + G  PDV +Y TL
Sbjct: 233 QESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTL 292

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I G C+    + A     +M N   E      P+  TY+TI +G CK G +  A ++   
Sbjct: 293 ICGFCKHSKLVEAECYLHKMVNSGVE------PNEFTYNTIINGFCKAGMMQNADKILRD 346

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
              +   PD  TY+SLI G C   D N A  +F E M++G + +++ +N ++  L K G 
Sbjct: 347 AMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGL 406

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + +A +L++ M++ G  PD   YN +++G C  G ++ A  +     + GC+ D+F++  
Sbjct: 407 VLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNT 466

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LI+GYCK + ++ A+ +   MLS GI P V+TYNT
Sbjct: 467 LIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNT 501



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 182/392 (46%), Gaps = 67/392 (17%)

Query: 15  PPVCSFNILF-GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V S+N L  G    +K  +    L K +NS G+ P+ +TYN +IN FCK G +     
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNS-GVEPNEFTYNTIINGFCKAGMMQNADK 342

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L   +   F PD  T++SLI GLC +  +  A A+F +    G K  +  Y TL+ GL 
Sbjct: 343 ILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLS 402

Query: 134 RTGHTIVALNLFEEM---------------------------ANG--NGEFGVVCKPDAI 164
           + G  + AL L ++M                           ANG  N      C PD  
Sbjct: 403 KQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIF 462

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T++T+ DG CK+  +DKA E+   M    I PDV+TY +L+ G C A   +     F  M
Sbjct: 463 TFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAM 522

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +++G  PN++T+N+++   CK+ K+ EA  L + M   G+ PD     TL+ G C  G +
Sbjct: 523 LEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGEL 582

Query: 285 NRAKELFVSMES------------------------------------NGCMRDVFSYGI 308
           ++A ELFV++E                                     + C  D ++Y +
Sbjct: 583 DKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRV 642

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +I+ YCK   I+ A +   E +SKG+ P+  T
Sbjct: 643 MIDSYCKTGNIDLAHTFLLENISKGLVPSFTT 674



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 161/308 (52%), Gaps = 6/308 (1%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            +++F+R++     P + +YN ++N   + G  S    V  R+      PD  T T  +K
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMK 154

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
             C   R   A  L   +   GC+ +  +Y  +I+G  +    I A +LF+EM       
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG--- 211

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
             +C PD +T++ +   LCK+G V ++++LF K+    + P++ T+   I+G C     +
Sbjct: 212 --IC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAID 268

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA  L   ++ +G+ P+V+++N ++   CK+ K+ EA   L  M+  GV P+   YNT++
Sbjct: 269 EAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTII 328

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +GFC  G +  A ++       G + D F+Y  LING C + ++  A++++ E + KG +
Sbjct: 329 NGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFK 388

Query: 336 PTVVTYNT 343
            +++ YNT
Sbjct: 389 HSIILYNT 396



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 155/321 (48%), Gaps = 7/321 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L   L+K       L L K +   G  PD++TYN+++N  CKMG +S    +L   +
Sbjct: 394 YNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAI 453

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                PD  TF +LI G C +  + +A  +   + + G  PDV TY TL+NGLC+     
Sbjct: 454 AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLD 513

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
             ++ F+ M          C P+ ITY+ + +  CK+  V +A ELF +MK   + PD+V
Sbjct: 514 NVVDTFKAMLEKG------CTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIV 567

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           T  +LI G C   + ++A  LF+ +  +     +   FN+++N  C+   +  A +L   
Sbjct: 568 TLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHK 627

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M      PD   Y  ++D +C TG ++ A    +   S G +    + G ++N  C    
Sbjct: 628 MGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHR 687

Query: 319 IEGALSLYSEMLSKGIRPTVV 339
           +  A+ + + M+  GI P  V
Sbjct: 688 LSEAVVIINLMVQNGIVPEEV 708



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 129/254 (50%), Gaps = 6/254 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           +  +++    + ++ EA  +F ++  + C+P V +Y  ++N L   G+   A  ++  M 
Sbjct: 79  YIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMK 138

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
               + G+   PD  T++      C  G    A  L   M  +    + V+Y ++I GF 
Sbjct: 139 ----DIGIY--PDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFY 192

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
             N   EA  LF EM+ QG+ P+++TFN +++ LCK G + E+ +L   +++ GV P+  
Sbjct: 193 KENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLF 252

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            +N  + G C  G ++ A  L  S+ S G   DV SY  LI G+CK+ ++  A     +M
Sbjct: 253 TFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312

Query: 330 LSKGIRPTVVTYNT 343
           ++ G+ P   TYNT
Sbjct: 313 VNSGVEPNEFTYNT 326



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 147/324 (45%), Gaps = 20/324 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L     K ++ D  + +   + S G+ PD+ TYN L+N  CK  ++      
Sbjct: 459 PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDT 518

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L    TP+ +T+  LI+  C + ++ EA  LF +++  G  PD+ T  TLI GLC 
Sbjct: 519 FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCS 578

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYST-----ITDGLCKEGFVDKAKELFLKM 189
            G    A  LF  +           K    +YST     + +  C++  V  A++LF KM
Sbjct: 579 NGELDKAYELFVTIE----------KEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKM 628

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
              +  PD  TY  +I  +C   + + A    +E + +G+ P+  T   ++N LC   ++
Sbjct: 629 GGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRL 688

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            EA  ++ LM+Q G+ P+    N++ +      +   A ++ V           +SY +L
Sbjct: 689 SEAVVIINLMVQNGIVPEE--VNSIFEA---DKKEVAAPKIVVEYLLKKSHITYYSYELL 743

Query: 310 INGYCKNKEIEGALSLYSEMLSKG 333
            +G    K +E    LY     K 
Sbjct: 744 YDGIRNRKVVEARPLLYKVAYQKA 767



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 210 YANDWNEAKCLFIEM-MDQGVQPNVVTFNVIMNELCKNGKMDEASRLL-ELMIQIGVRPD 267
           Y ND   A  +F ++  + G +  + T+  ++ +L  +GK +    +L E+   +  +  
Sbjct: 16  YQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKML 75

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
             VY  +M  +   G+V  A  +F  M+   C   V SY  ++N   +      A  +Y 
Sbjct: 76  EGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYM 135

Query: 328 EMLSKGIRPTVVTY 341
            M   GI P V T+
Sbjct: 136 RMKDIGIYPDVYTH 149


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 182/373 (48%), Gaps = 75/373 (20%)

Query: 42  RLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101
           R  +  + PD+ T+ ILI+C C  G ++ GF  LG+I+++    DAV FT L++ LCA+ 
Sbjct: 3   RAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKK 62

Query: 102 RIMEAAAL-FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160
           R  +A  +   ++   GC PDVF+Y+TL+ GLC       A  L   MA    E G  C 
Sbjct: 63  RTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMA----EDGDNCP 118

Query: 161 PDAITYSTIT-----------------------------------DGLCKEGFVDKAKEL 185
           PD ++YST+                                    DGLCK   +DKA+ +
Sbjct: 119 PDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAV 178

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             +M DE+I P+  TY SLI G+  +  W EA  +  EM   G +PNVVT+N++++ LCK
Sbjct: 179 LQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCK 238

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDG---------------------------- 277
           +G   EA  +   MIQ G +PDA+ Y +L+ G                            
Sbjct: 239 SGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHT 298

Query: 278 -------FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
                  +C  GR++ A   F+ M+  G M D+ +Y  +I+G CK   ++ A+S + +M+
Sbjct: 299 FSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMI 358

Query: 331 SKGIRPTVVTYNT 343
             G+ P ++T+ T
Sbjct: 359 DDGLSPNIITFTT 371



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 183/381 (48%), Gaps = 50/381 (13%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H  PP V + N +   L K +  D   ++ +++    + P+  TYN LI+ +   G+ + 
Sbjct: 150 HGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTE 209

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L  + R    P+ VT+  LI  LC      EA  +F  +   G KPD  TY +L++
Sbjct: 210 AVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLH 269

Query: 131 GLCRTGHTIVALNLFEEMANGNG----------EFGVVCK-------------------- 160
           G    G+ +V +N  +++   NG          E    CK                    
Sbjct: 270 GYATEGN-LVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFM 328

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           PD +TY+T+ DGLCK G +D A   F +M D+ ++P+++T+T+LI GF     W +A+ L
Sbjct: 329 PDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEEL 388

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           F EMMD+G+ P+V  F  +++ L K GK+ EA +L +LM + G +P+   YNT++ G+ +
Sbjct: 389 FYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFI 448

Query: 281 TGRVNRAKELFVS-------------------MESNGCMRDVFSYGILINGYCKNKEIEG 321
            G V    +L                      M S G   DV +   LI+  C++  IE 
Sbjct: 449 AGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIED 508

Query: 322 ALSLYSEMLSKGIRPTVVTYN 342
            L+L+ EML K  +   +T N
Sbjct: 509 ILTLFREMLGKADKTDTITEN 529



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 172/365 (47%), Gaps = 41/365 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S++ +     K        +LF ++   G+ P++ T N +I+  CK+  +     
Sbjct: 118 PPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEA 177

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL +++     P+  T+ SLI G  +  +  EA  +  ++   G +P+V TY  LI+ LC
Sbjct: 178 VLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLC 237

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG--------------------- 172
           ++G    A  +F  M           KPDA TY ++  G                     
Sbjct: 238 KSGFHAEAREIFNSMIQSGP------KPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNG 291

Query: 173 --------------LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
                          CK G +D+A   F+KM+     PD+VTYT++I G C     ++A 
Sbjct: 292 MRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAM 351

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
             F +M+D G+ PN++TF  +++     GK ++A  L   M+  G+ PD +++  ++D  
Sbjct: 352 SRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRL 411

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
              G+V  A++LF  M   G   +V SY  +I+GY    E+   + L  +ML  G++PT 
Sbjct: 412 FKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTA 471

Query: 339 VTYNT 343
           VT+NT
Sbjct: 472 VTFNT 476



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 152/348 (43%), Gaps = 60/348 (17%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L      +  +   + + K ++  G  P++ TYN+LI+C CK G  +    +
Sbjct: 189 PNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREI 248

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAES--------------------------------- 101
              +++S   PDA T+ SL+ G   E                                  
Sbjct: 249 FNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCK 308

Query: 102 --RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             R+ EA+  F K++  G  PD+ TYTT+I+GLC+ G    A++ F +M +         
Sbjct: 309 CGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDG------L 362

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            P+ IT++T+  G    G  +KA+ELF +M D  I PDV  +T++I          EA+ 
Sbjct: 363 SPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQK 422

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM-------------------I 260
           LF  M   G +PNVV++N +++     G++ E  +LL+ M                   +
Sbjct: 423 LFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMV 482

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
            +G++PD     TL+D  C  GR+     LF  M       D  +  I
Sbjct: 483 SMGLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENI 530


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 180/339 (53%), Gaps = 11/339 (3%)

Query: 5   DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           DY  R+        S N +   L K      V S++K +    +  ++ T++++IN  CK
Sbjct: 187 DYGFRL-----SALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCK 241

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
           +G+      V+  +    F+P  +T+ ++I G C   ++ +A AL  ++ A    P+  T
Sbjct: 242 VGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT 301

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           +  LI+G CR  +   A  +FEEM           +P+ +TY+++ +GLC  G +D+A  
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQG------LQPNVVTYNSLINGLCSNGKLDEALG 355

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L  KM    + P+VVTY +LI GFC      EA+ +  ++  +G+ PNV+TFN +++   
Sbjct: 356 LQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYG 415

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K G+MD+A  L  +M+  GV P+ S YN L+ GFC  G V  A++L   ME NG   D+ 
Sbjct: 416 KAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLV 475

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +Y IL++  CK  E   A+ L  EM   G+ P+ +TYN 
Sbjct: 476 TYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNA 514



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 174/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +     K        +L K + +  + P+  T+NILI+ FC+   V+    V
Sbjct: 262 PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKV 321

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R    P+ VT+ SLI GLC+  ++ EA  L  K+   G KP+V TY  LING C+
Sbjct: 322 FEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCK 381

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  L    EM +  G+ G+   P+ IT++T+ D   K G +D A  L   M D  +
Sbjct: 382 KK----MLKEAREMLDDIGKRGLA--PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGV 435

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY  LI GFC   +  EA+ L  EM   G++ ++VT+N++++ LCK G+  +A R
Sbjct: 436 CPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVR 495

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M ++G+ P    YN L+DG+   G    A  +   ME  G   ++ +Y +LI G+C
Sbjct: 496 LLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFC 555

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              ++E A  L +EML KG+ P   TY+
Sbjct: 556 NKGKLEEANRLLNEMLEKGLIPNRTTYD 583



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 144/274 (52%), Gaps = 7/274 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M R     P V ++N L   L  N   D  L L  +++ +GL P++ TYN LIN F
Sbjct: 321 VFEEMQR-QGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGF 379

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK   +     +L  I +    P+ +TF +LI       R+ +A  L + +   G  P+V
Sbjct: 380 CKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNV 439

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LI G CR G+   A  L +EM  GNG      K D +TY+ + D LCK+G   KA
Sbjct: 440 STYNCLIVGFCREGNVKEARKLAKEME-GNG-----LKADLVTYNILVDALCKKGETRKA 493

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L  +M +  +NP  +TY +LI G+    +   A  +   M  +G + N+VT+NV++  
Sbjct: 494 VRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKG 553

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
            C  GK++EA+RLL  M++ G+ P+ + Y+ L D
Sbjct: 554 FCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 587



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 6/233 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K K       +   +   GL P++ T+N LI+ + K GR+   F++
Sbjct: 367 PNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLL 426

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L +   P+  T+  LI G C E  + EA  L  ++   G K D+ TY  L++ LC+
Sbjct: 427 RSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCK 486

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A+ L +EM      F V   P  +TY+ + DG  +EG    A  +   M+ +  
Sbjct: 487 KGETRKAVRLLDEM------FEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGR 540

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
             ++VTY  LI+GFC      EA  L  EM+++G+ PN  T++++ +E+ + G
Sbjct: 541 RANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKG 593



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     +  +      L K +   GL  DL TYNIL++  CK G       +
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRL 496

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P  +T+ +LI G   E     A  + T +   G + ++ TY  LI G C 
Sbjct: 497 LDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCN 556

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
            G    A  L  EM     E G++  P+  TY  + D + ++GF+
Sbjct: 557 KGKLEEANRLLNEML----EKGLI--PNRTTYDILRDEMMEKGFI 595



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 54/112 (48%)

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N +  ++++    KNG+MD A    +     G R  A   N ++      GR+   + ++
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVY 217

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M       +V ++ ++ING CK  + + A  +  +M + G  P+V+TYNT
Sbjct: 218 KEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNT 269


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 171/325 (52%), Gaps = 7/325 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD MLR    PP V +FN L   + K    ++  +L   +   G+ PD+YTY   +   
Sbjct: 266 MFDEMLR-RGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGL 324

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR+     +   +      P+ V FT+LI   C E  +     L  ++   G K D+
Sbjct: 325 CKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDL 384

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  L NGLCR      A ++ EEM N NG      KPD +TY+T+ DG CKEG +D A
Sbjct: 385 VAYNALANGLCRVRDLKAANDIVEEMRN-NG-----LKPDKVTYTTLIDGFCKEGELDMA 438

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+  +M DE +  D VTYT+LI G   +    +++ +  EMM+ G++P+  T+ ++++ 
Sbjct: 439 MEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDA 498

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CKN  +    +LL+ M   G +P    YN +M+GFC+ G++  A  L  +M + G   D
Sbjct: 499 FCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPD 558

Query: 303 VFSYGILINGYCKNKEIEGALSLYS 327
             +Y IL++G+CK+ ++  A  L S
Sbjct: 559 DITYNILLDGHCKHGKVRDAEELKS 583



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 176/329 (53%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP    FN+L   + ++    +  ++F  +   G+ P + T+N L++  CK   ++    
Sbjct: 241 PPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANA 300

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + G + ++   PD  T+ + ++GLC   RI +A  +F ++R  G  P+   +TTLI+  C
Sbjct: 301 LRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHC 360

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+    L L  EMA          K D + Y+ + +GLC+   +  A ++  +M++  
Sbjct: 361 KEGNVAAGLELHREMATRG------IKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNG 414

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTYT+LI GFC   + + A  +  EM D+GV  + VT+  +++ L K+G+  ++ 
Sbjct: 415 LKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSE 474

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R+L  M++ G+ PD + Y  ++D FC    V    +L   M++ G    V +Y +++NG+
Sbjct: 475 RILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGF 534

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           C   +++ A  L + ML+ G+ P  +TYN
Sbjct: 535 CILGQMKNADMLLNAMLNIGVCPDDITYN 563



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 6/305 (1%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           + + +L   G+ P+   +N+L+    + G+++    +   +LR    P  VTF +L+ G+
Sbjct: 230 AFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGM 289

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C  S +  A AL   +   G  PDV+TY   + GLC+ G    A+ +FEEM     E GV
Sbjct: 290 CKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMR----ERGV 345

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              P+ + ++T+ D  CKEG V    EL  +M    I  D+V Y +L  G C   D   A
Sbjct: 346 --NPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAA 403

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +  EM + G++P+ VT+  +++  CK G++D A  + + M   GV  D   Y TL+ G
Sbjct: 404 NDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISG 463

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
              +GR   ++ +   M   G   D  +Y ++I+ +CKN +++    L  EM +KG +P 
Sbjct: 464 LSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPG 523

Query: 338 VVTYN 342
           VVTYN
Sbjct: 524 VVTYN 528



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 6/241 (2%)

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + EA A + +L   G  P+   +  L+  + R+G    A N+F+EM       GV   P 
Sbjct: 225 VPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEML----RRGV--PPT 278

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +T++T+  G+CK   ++ A  L   M    + PDV TY + ++G C A    +A  +F 
Sbjct: 279 VVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFE 338

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM ++GV PN V F  +++  CK G +     L   M   G++ D   YN L +G C   
Sbjct: 339 EMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVR 398

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  A ++   M +NG   D  +Y  LI+G+CK  E++ A+ +  EM  +G+    VTY 
Sbjct: 399 DLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYT 458

Query: 343 T 343
           T
Sbjct: 459 T 459


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 186/368 (50%), Gaps = 42/368 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLN---SIGLF--PDLYTYNILINCFCKMGRVS 69
           P V +F IL   L K +  D  L +F+++N   S G    PD+ TYN LI+  CK+GR  
Sbjct: 338 PNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQE 397

Query: 70  PGFVVLGRILRS---CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            G  ++ R +RS   C  P+ VT+  LI G C  S I  A  LF ++   G  P+V T  
Sbjct: 398 EGLGLVER-MRSQPRCM-PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLN 455

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVV---------------------------- 158
           TL++G+C+ G    A+  F EM  G G  G                              
Sbjct: 456 TLVDGMCKHGRINGAVEFFNEM-QGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLE 514

Query: 159 --CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
             C PDAI Y T+  GL + G +D+A  +  KMK+   +PD+V++  LI GFC  N  +E
Sbjct: 515 AGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDE 574

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  +  EM + G++P+ VT+N +++   K G    A RL++ M++ G+ P    Y  L+ 
Sbjct: 575 AYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIH 634

Query: 277 GFCLTGRVNRAKELFVSMESNGCMR-DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            +CL G ++ A ++F  M S   +  +   Y ILIN  C+  +++ ALSL  +M  KG++
Sbjct: 635 AYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVK 694

Query: 336 PTVVTYNT 343
           P   T+N 
Sbjct: 695 PNTNTFNA 702



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 175/331 (52%), Gaps = 12/331 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
             S N L   L + + +  + +L   +  + + P++ T+ ILIN  CK  RV     V  
Sbjct: 305 AASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFE 364

Query: 77  RILRS-----CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF-GCKPDVFTYTTLIN 130
           ++           PD +T+ +LI GLC   R  E   L  ++R+   C P+  TY  LI+
Sbjct: 365 KMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLID 424

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G C+      A  LF++M N +G       P+ +T +T+ DG+CK G ++ A E F +M+
Sbjct: 425 GYCKASMIEAARELFDQM-NKDG-----VPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQ 478

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            + +  + VTYT+LIR FC  N+  +A  LF EM++ G  P+ + +  +++ L + GK+D
Sbjct: 479 GKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLD 538

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            AS +L  M + G  PD   +N L++GFC   +++ A E+   ME+ G   D  +Y  LI
Sbjct: 539 RASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLI 598

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + + K  +   A  L  +M+ +G+ PTVVTY
Sbjct: 599 SHFSKTGDFSTAHRLMKKMVKEGLVPTVVTY 629



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 184/388 (47%), Gaps = 52/388 (13%)

Query: 3   IFDYMLRMHPS-PPPVCSFNILFGCLAKNKHY------DTVLSLFKRLNSIGLFPDLYTY 55
           + D ML+     PP   + +I+F  L+K          + ++ L  +     +FP+    
Sbjct: 214 LLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWL 273

Query: 56  NILINCFCKMGRVSPGFVVLGRILR--------SC------------------------- 82
             LI+  C+ GR    + VL  +++        SC                         
Sbjct: 274 TQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKE 333

Query: 83  --FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA-----FGCKPDVFTYTTLINGLCRT 135
               P+ VTF  LI  LC   R+ EA  +F K+       F  +PDV TY TLI+GLC+ 
Sbjct: 334 MDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKV 393

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           G     L L E M +        C P+ +TY+ + DG CK   ++ A+ELF +M  + + 
Sbjct: 394 GRQEEGLGLVERMRSQPR-----CMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVP 448

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+VVT  +L+ G C     N A   F EM  +G++ N VT+  ++   C    +++A  L
Sbjct: 449 PNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMEL 508

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            + M++ G  PDA VY TL+ G    G+++RA  +   M+  G   D+ S+ +LING+C+
Sbjct: 509 FDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCR 568

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +++ A  +  EM + GI+P  VTYNT
Sbjct: 569 KNKLDEAYEMLKEMENAGIKPDGVTYNT 596



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 150/308 (48%), Gaps = 8/308 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M +    PP V + N L   + K+   +  +  F  +   GL  +  TY  LI  F
Sbjct: 438 LFDQMNK-DGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAF 496

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +  +     +   +L +  +PDA+ + +LI GL    ++  A+ + +K++  G  PD+
Sbjct: 497 CNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDI 556

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            ++  LING CR      A  + +EM N         KPD +TY+T+     K G    A
Sbjct: 557 VSFNVLINGFCRKNKLDEAYEMLKEMENAG------IKPDGVTYNTLISHFSKTGDFSTA 610

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMN 241
             L  KM  E + P VVTY +LI  +C   + +EA  +F +M     V PN V +N+++N
Sbjct: 611 HRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILIN 670

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LC+  ++D A  L++ M   GV+P+ + +N +  G      +++A EL   M  + C  
Sbjct: 671 SLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNP 730

Query: 302 DVFSYGIL 309
           D  +  IL
Sbjct: 731 DYITMEIL 738



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 140/354 (39%), Gaps = 80/354 (22%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           ++ +L LFK   S  +   +    +LI CF +   V   F+V                  
Sbjct: 140 HNKLLDLFKTSKSHKIPLSVNAATLLIRCFGRAQMVDESFLVYNE--------------- 184

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
               LC   R+       T +R             LI+ L R G    AL+L +EM    
Sbjct: 185 ----LCPSRRL-------THIR-----------NILIDVLFRKGRVDDALHLLDEMLQPK 222

Query: 153 GEF------------------------------GVVCK-------PDAITYSTITDGLCK 175
            EF                              G+V K       P++I  + +   LC+
Sbjct: 223 AEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCR 282

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
            G  D+A ++   +       +  +  +L+     A ++     L  EM +  +QPNVVT
Sbjct: 283 SGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVT 342

Query: 236 FNVIMNELCKNGKMDEASRLLELM-----IQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           F +++N LCK  ++DEA  + E M         V PD   YNTL+DG C  GR      L
Sbjct: 343 FGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGL 402

Query: 291 FVSMESN-GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M S   CM +  +Y  LI+GYCK   IE A  L+ +M   G+ P VVT NT
Sbjct: 403 VERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNT 456



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKMGRVSPGFV 73
           P V ++  L      N + D  + +F+ ++S   + P+   YNILIN  C+  +V     
Sbjct: 624 PTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALS 683

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++  +      P+  TF ++ KGL  ++ + +A  L  ++    C PD  T   L   L 
Sbjct: 684 LMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLS 743

Query: 134 RTGHT 138
             G T
Sbjct: 744 AVGET 748



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 40/97 (41%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF  M      PP    +NIL   L +    D  LSL   +   G+ P+  T+N +    
Sbjct: 648 IFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGL 707

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
            +   +S  F ++ R+      PD +T   L + L A
Sbjct: 708 QEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSA 744


>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
          Length = 461

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 196/380 (51%), Gaps = 45/380 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + P+LYTY++LI
Sbjct: 34  VFDELLR-RGKGATIYGLNRALDDVARHSPAAAV-SRYNRMARAGADEVTPNLYTYSVLI 91

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
            C C+ GR+  GF  LG +++  F  +A+TFT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 92  GCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLCRMTQLGC 151

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+VF+ T L+ GLC    +  AL L + M +  G+    C PD + Y+T+ +G  KEG 
Sbjct: 152 IPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVLYNTVINGFFKEGD 207

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL------------------ 220
            DKA   + +M D+ I PDVVTY+S+I   C A   ++A  +                  
Sbjct: 208 PDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNS 267

Query: 221 ----------------FIEMM-DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
                           F++MM   GV+P+VVT N++M+ LCKN +  EA ++   M + G
Sbjct: 268 IVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCG 327

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           ++PD + Y TL+ G+   G +    +L   M  NG   +   + ILI  Y K ++++ A+
Sbjct: 328 LKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAM 387

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            ++S+M  +G+ P  V Y T
Sbjct: 388 LVFSKMRQQGLSPNAVNYRT 407



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 142/313 (45%), Gaps = 8/313 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSPGF 72
           P V S  IL   L         L L + +   G    PD+  YN +IN F K G     +
Sbjct: 153 PNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAY 212

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
                +      PD VT++S+I  LC    + +A  +   +   G  P+  TY ++++G 
Sbjct: 213 ATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGY 272

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C +G    A+   + M +   E      PD +T + + D LCK     +A+++F  M   
Sbjct: 273 CSSGQLTEAIGFLKMMCSDGVE------PDVVTCNLLMDYLCKNRRCTEARKIFNSMTKC 326

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PD+ TY +L++G+       E   L   M+  G+QPN   FN+++    K  K+DEA
Sbjct: 327 GLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEA 386

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             +   M Q G+ P+A  Y T++D  C  GRV  A      M + G   D+  Y  LI+G
Sbjct: 387 MLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHG 446

Query: 313 YCKNKEIEGALSL 325
           +C   + E A  L
Sbjct: 447 FCTCDKWEKAEEL 459



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 11/290 (3%)

Query: 7   MLRMHPS-----PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +L+M P      PP V  +N +     K    D   + +  +   G+ PD+ TY+ +I  
Sbjct: 177 LLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAA 236

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK   +     VL  ++++   P+  T+ S++ G C+  ++ EA      + + G +PD
Sbjct: 237 LCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPD 296

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V T   L++ LC+      A  +F  M           KPD  TY T+  G   +G + +
Sbjct: 297 VVTCNLLMDYLCKNRRCTEARKIFNSMTKCG------LKPDITTYCTLLQGYATKGALVE 350

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
             +L   M    I P+   +  LI  +      +EA  +F +M  QG+ PN V +  +++
Sbjct: 351 MHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVID 410

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
            LCK G++ +A   L+ MI  G+ PD  VY  L+ GFC   +  +A+EL 
Sbjct: 411 VLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELI 460


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 174/328 (53%), Gaps = 9/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   + K+  +   +++   + + G  P++ TYN++IN  C+ GRV     +
Sbjct: 185 PSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEI 244

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+    F PD V++T+++KGLCA  R  +   LF ++    C P+  T+  L+   CR
Sbjct: 245 LNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCR 304

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ + ++M+         C P+    + + + +CK+G VD A +    M     
Sbjct: 305 GGMVERAIQVLQQMSQHG------CTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGC 358

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPD ++YT+++RG C A  W  AK L  EM+ +   PN VTFN  +  LC+ G +++A +
Sbjct: 359 NPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIK 418

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+ELM + G       YN L+ GFC+ GRV+ A ELF ++    C  +  +Y  L+ G C
Sbjct: 419 LIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLTGLC 475

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             + ++ A  L +EM+ K      VT+N
Sbjct: 476 HAERLDAAAELLAEMIQKDCPLNAVTFN 503



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 133/228 (58%), Gaps = 8/228 (3%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCK 175
           GC+P V TYT L+  +C++     A+N+ +EM A G       C P+ +TY+ I +G+C+
Sbjct: 182 GCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKG-------CTPNIVTYNVIINGMCR 234

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           EG VD AKE+  ++      PD+V+YT++++G C A  W++ K LF EM+D+   PN VT
Sbjct: 235 EGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVT 294

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           F++++   C+ G ++ A ++L+ M Q G  P+ ++ N +++  C  GRV+ A +   +M 
Sbjct: 295 FDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 354

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             GC  D  SY  ++ G C+    E A  L  EM+ K   P  VT+NT
Sbjct: 355 MYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNT 402



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 164/329 (49%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+  +   L   + +D V  LF  +      P+  T+++L+  FC+ G V     V
Sbjct: 255 PDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQV 314

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ +   TP+      +I  +C + R+ +A      +  +GC PD  +YTT++ GLCR
Sbjct: 315 LQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCR 374

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  EM   N      C P+ +T++T    LC++G +++A +L   M +   
Sbjct: 375 AGRWEHAKELLPEMVRKN------CPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGC 428

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +  +VTY +L+ GFC     + A  LF  +     +PN +T+  ++  LC   ++D A+ 
Sbjct: 429 SVGIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAE 485

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  MIQ     +A  +N L+  FC  G V  A EL   M  +GC  ++ ++  L++G  
Sbjct: 486 LLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGIT 545

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+   E AL L   ++SKG+    +TY++
Sbjct: 546 KDCNSEEALELLHGLVSKGVSLDTITYSS 574



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 162/341 (47%), Gaps = 10/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R     P + ++N++   + +    D    +  RL+S G  PD+ +Y  ++   
Sbjct: 209 VLDEM-RAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGL 267

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   R     V+   ++     P+ VTF  L++  C    +  A  +  ++   GC P+ 
Sbjct: 268 CAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNT 327

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
                +IN +C+ G    A +    M    G +G  C PD I+Y+T+  GLC+ G  + A
Sbjct: 328 TLCNIVINAICKQGRVDDAYDFLNNM----GMYG--CNPDTISYTTVLRGLCRAGRWEHA 381

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           KEL  +M  +N  P+ VT+ + I   C      +A  L   M + G    +VT+N +++ 
Sbjct: 382 KELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHG 441

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G++D A   LEL   +   P+   Y TL+ G C   R++ A EL   M    C  +
Sbjct: 442 FCVQGRVDSA---LELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLN 498

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++ +L++ +C+   +E A+ L ++M+  G  P ++T+NT
Sbjct: 499 AVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNT 539



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 152/335 (45%), Gaps = 9/335 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
            +  H   P     NI+   + K    D        +   G  PD  +Y  ++   C+ G
Sbjct: 317 QMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAG 376

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R      +L  ++R    P+ VTF + I  LC +  I +A  L   +  +GC   + TY 
Sbjct: 377 RWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYN 436

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            L++G C  G    AL LF  +          C+P+ ITY+T+  GLC    +D A EL 
Sbjct: 437 ALVHGFCVQGRVDSALELFNNLP---------CEPNTITYTTLLTGLCHAERLDAAAELL 487

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++   + VT+  L+  FC      EA  L  +MM+ G  PN++TFN +++ + K+
Sbjct: 488 AEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKD 547

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
              +EA  LL  ++  GV  D   Y++++D      R   A ++  +++  G    V  Y
Sbjct: 548 CNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMY 607

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             ++   CK  E + A+  ++ M+S G  P   TY
Sbjct: 608 NKILFALCKRCETDQAIDFFAYMVSNGCMPNESTY 642



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN     L +    +  + L + +   G    + TYN L++ FC  GRV     
Sbjct: 394 PPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALE 453

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +   C  P+ +T+T+L+ GLC   R+  AA L  ++    C  +  T+  L++  C
Sbjct: 454 LFNNL--PC-EPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFC 510

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ L  +M     E G  C P+ IT++T+ DG+ K+   ++A EL   +  + 
Sbjct: 511 QKGFVEEAMELVNQMM----EHG--CTPNLITFNTLLDGITKDCNSEEALELLHGLVSKG 564

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           ++ D +TY+S++      +   EA  +   + D G++P V  +N I+  LCK  + D+A 
Sbjct: 565 VSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAI 624

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
                M+  G  P+ S Y  L++G    G +  A+ +   + + G +
Sbjct: 625 DFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVL 671



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 80/154 (51%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M      P VVTYT L+   C ++ + EA  +  EM  +G  PN+VT+NVI+N +C+ G+
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +D+A  +L  +   G +PD   Y T++ G C   R +  K LF  M    C+ +  ++ +
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDM 297

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           L+  +C+   +E A+ +  +M   G  P     N
Sbjct: 298 LVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCN 331



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%)

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+Q G +P    Y  L++  C +     A  +   M + GC  ++ +Y ++ING C+   
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A  + + + S G +P +V+Y T
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTT 262



 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +M   GC   V +Y +L+   CK+     A+++  EM +KG  P +VTYN
Sbjct: 177 TMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYN 226


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 182/331 (54%), Gaps = 9/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNS---IGLFPDLYTYNILINCFCKMGRVSPG 71
           P +  FN +   +AK + YD V++L+KR+ +   I + PDLYT NIL+NCFC+  + S  
Sbjct: 8   PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSA 67

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
              LG++++    PD VT +SL+ G C  + I +A  +  ++   G K DV   T LI+ 
Sbjct: 68  LSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDT 127

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LC+    + AL + + M +          P+ +TYS++  GLCK G +  A+    +M  
Sbjct: 128 LCKNRLVVPALEVLKRMKDRG------ISPNVVTYSSLITGLCKSGRLADAERRLHEMDS 181

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + INP+V+T+++LI  +      ++   ++  M+   + PNV T++ ++  LC + ++DE
Sbjct: 182 KKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDE 241

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A ++L+LMI  G  P+   Y+TL +GF  + RV+   +L   M   G   +  S   LI 
Sbjct: 242 AIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIK 301

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           GY +  +I+ AL ++  M S G+ P + +YN
Sbjct: 302 GYFQAGKIDLALGVFGYMTSNGLIPNIRSYN 332



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 138/289 (47%), Gaps = 6/289 (2%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           IL   L KN+     L + KR+   G+ P++ TY+ LI   CK GR++     L  +   
Sbjct: 123 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 182

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
              P+ +TF++LI       ++ +  +++  +      P+VFTY++LI GLC       A
Sbjct: 183 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 242

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
           + + + M +        C P+ +TYST+ +G  K   VD   +L   M    +  + V+ 
Sbjct: 243 IKMLDLMISKG------CTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSC 296

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            +LI+G+  A   + A  +F  M   G+ PN+ ++N+++  L  NG++++A    E M +
Sbjct: 297 NTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQK 356

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
                D   Y  ++ G C    V  A +LF  ++      D  +Y I+I
Sbjct: 357 TRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMI 405



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 29/270 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K+            ++S  + P++ T++ LI+ + K G++S    V
Sbjct: 151 PNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSV 210

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    P+  T++SLI GLC  +R+ EA  +   + + GC P+V TY+TL NG  +
Sbjct: 211 YKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFK 270

Query: 135 TGHTIVALNLFEEMANGN-------------------------GEFGVVCK----PDAIT 165
           +      + L ++M                             G FG +      P+  +
Sbjct: 271 SSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRS 330

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  GL   G V+KA   F  M+    + D++TYT +I G C A    EA  LF ++ 
Sbjct: 331 YNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLK 390

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
            + V+P+   + +++ EL + G   EA  L
Sbjct: 391 FKRVEPDFKAYTIMIAELNRAGMRTEADAL 420



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 65/115 (56%)

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           + P++ T N+++N  C+  +   A   L  M+++G+ PD    ++L++GFCL+  +  A 
Sbjct: 44  ISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAV 103

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +   ME  G  RDV    ILI+  CKN+ +  AL +   M  +GI P VVTY++
Sbjct: 104 YVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSS 158


>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
          Length = 461

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 174/335 (51%), Gaps = 15/335 (4%)

Query: 3   IFDYMLRMHPS----PPPVCSFNILFGCLAKNKHYDTV--LSLFKRLNSIGLFPDLYTYN 56
           +FD +LR           + S N     +A++     V   +   R +   + P L+TY 
Sbjct: 43  VFDELLRQGRGGGGGASIIRSLNRALAAVARDSPAAAVSGFNRMARSSDGAVTPTLHTYG 102

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRA 115
           ILI C C+ GR+  GF  LG +++  +  + + FT L+K LCAE R   A  +   ++  
Sbjct: 103 ILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTE 162

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
            GC P VF+Y  L+ GLC    +  AL L   MA+  G+    C PD ++YSTI DGL K
Sbjct: 163 LGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGD----CPPDVVSYSTIIDGLFK 218

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           EG  DKA   + +M +  I PDVVTY +++   C A   ++A  +   M+  GV P+ +T
Sbjct: 219 EGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCIT 278

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N I++  C +G+  EA  +LE M   GV PDA  Y +LMD  C  GR   A+++  SM 
Sbjct: 279 YNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMI 338

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
             G   +V +Y  L++GY      +GAL    ++L
Sbjct: 339 KRGLKPNVITYSTLLHGYA----TKGALVEMRDLL 369



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 8/220 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSPGF 72
           P V S+NIL   L         L L   +   G    PD+ +Y+ +I+   K G     +
Sbjct: 167 PHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAY 226

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
                +L     PD VT+ +++  LC    + +A  +  ++   G  PD  TY ++++G 
Sbjct: 227 STYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGY 286

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C +G +  A+ + E+M +   E      PDA+TY+++ D LCK G   +A+++   M   
Sbjct: 287 CSSGQSKEAIGILEKMCSDGVE------PDAVTYTSLMDYLCKNGRCIEARKILDSMIKR 340

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            + P+V+TY++L+ G+       E + L   M ++  + N
Sbjct: 341 GLKPNVITYSTLLHGYATKGALVEMRDLLDLMQNEAAKIN 380



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S++ +   L K    D   S +  +   G+ PD+ TYN ++   CK   +     
Sbjct: 203 PPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMD 262

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL R++++   PD +T+ S++ G C+  +  EA  +  K+ + G +PD  TYT+L++ LC
Sbjct: 263 VLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLC 322

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           + G  I A  + + M           KP+ ITYST+  G   +G + + ++L   M++E
Sbjct: 323 KNGRCIEARKILDSMIKRG------LKPNVITYSTLLHGYATKGALVEMRDLLDLMQNE 375



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 72/145 (49%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K +  D  + +  R+   G+ PD  TYN +++ +C  G+      +
Sbjct: 239 PDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGI 298

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PDAVT+TSL+  LC   R +EA  +   +   G KP+V TY+TL++G   
Sbjct: 299 LEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYAT 358

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC 159
            G  +   +L + M N   +    C
Sbjct: 359 KGALVEMRDLLDLMQNEAAKINSGC 383


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 192/393 (48%), Gaps = 75/393 (19%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRL---NSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           S+N L  CL++    D ++SL+K +   N   +FP+L T N ++N +CK+G ++   +  
Sbjct: 153 SYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARLFF 212

Query: 76  GRILRSCFTPD-------------------------------AVTFTSLIKGLCAESRIM 104
            RILR    PD                               AV++T+LI GLC   ++ 
Sbjct: 213 VRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGKLH 272

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           EA   + ++R  GC P V TYT L+  LC +G  + AL+LF EM     E G  C+P+  
Sbjct: 273 EALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMR----ERG--CEPNVY 326

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV------------------------- 199
           TY+ + D LCKEG +D+A ++  +M ++ + P VV                         
Sbjct: 327 TYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLM 386

Query: 200 ----------TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
                     TY  LI GFC     + A  L  +M++  + P+VVT+N +++ LC+ G +
Sbjct: 387 ESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVV 446

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D ASRL  LMI+ G  PD   +N  M   C  GRV  A ++  S++      +  +Y  L
Sbjct: 447 DSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTAL 506

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I+GYCK  +IE A SL+  ML++   P  +T+N
Sbjct: 507 IDGYCKAGKIEHAASLFKRMLAEECLPNSITFN 539



 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 157/328 (47%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  FN L G   K    +  + +   + S  + P++ TYN LI  FC+   +     +
Sbjct: 358 PSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMAL 417

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++ S  +PD VT+ +LI GLC    +  A+ LF  +   G  PD +T+   +  LCR
Sbjct: 418 LNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCR 477

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + E +   +       K +   Y+ + DG CK G ++ A  LF +M  E  
Sbjct: 478 MGRVGEAHQILESLKEKH------VKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEEC 531

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +T+  +I G        +A  L  +M    V+P + T+N+++ E+ K    D A+ 
Sbjct: 532 LPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANE 591

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  +I  G +P+   Y   +  +C  GR+  A+E+ + +++ G + D F Y +LIN Y 
Sbjct: 592 ILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYG 651

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               ++ A  +   M   G  P+ +TY+
Sbjct: 652 CMGLLDSAFGVLRRMFGTGCEPSYLTYS 679



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 163/358 (45%), Gaps = 35/358 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L +    D+   LF+ +   G  PD +T+N  + C C+MGRV     +
Sbjct: 428 PDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQI 487

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +       +   +T+LI G C   +I  AA+LF ++ A  C P+  T+  +I+GL +
Sbjct: 488 LESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRK 547

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ L E+MA    +F V  KP   TY+ + + + KE   D+A E+  ++     
Sbjct: 548 EGKVQDAMLLVEDMA----KFDV--KPTLHTYNILVEEVLKEYDFDRANEILNRLISSGY 601

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTYT+ I+ +C      EA+ + I++ ++GV  +   +N+++N     G +D A  
Sbjct: 602 QPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFG 661

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE------------------------- 289
           +L  M   G  P    Y+ LM    +                                  
Sbjct: 662 VLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFG 721

Query: 290 ----LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               LF  M   GC+ ++ +Y  LING CK   +  A SLY  M   GI P+ + +N+
Sbjct: 722 ITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNS 779



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 144/296 (48%), Gaps = 6/296 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     + K  D  ++L  ++    L PD+ TYN LI+  C++G V     +
Sbjct: 393 PNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRL 452

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R  F+PD  TF + +  LC   R+ EA  +   L+    K +   YT LI+G C+
Sbjct: 453 FRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCK 512

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +LF+ M          C P++IT++ + DGL KEG V  A  L   M   ++
Sbjct: 513 AGKIEHAASLFKRM------LAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDV 566

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P + TY  L+       D++ A  +   ++  G QPNVVT+   +   C  G+++EA  
Sbjct: 567 KPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEE 626

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           ++  +   GV  D+ +YN L++ +   G ++ A  +   M   GC     +Y IL+
Sbjct: 627 MVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILM 682



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 146/357 (40%), Gaps = 35/357 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN++   L K       + L + +    + P L+TYNIL+    K         +
Sbjct: 533 PNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEI 592

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R++ S + P+ VT+T+ IK  C++ R+ EA  +  K++  G   D F Y  LIN    
Sbjct: 593 LNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGC 652

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE---------- 184
            G    A  +   M      FG  C+P  +TYS +   L  E    +             
Sbjct: 653 MGLLDSAFGVLRRM------FGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTN 706

Query: 185 -------------------LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
                              LF KM +    P++ TY+ LI G C     N A  L+  M 
Sbjct: 707 ISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMR 766

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           + G+ P+ +  N +++  CK G   EA  LL+ M++         Y  L+ G        
Sbjct: 767 EGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKE 826

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +A+ +F S+   G   D  ++ +LI+G  K   ++    L + M   G R    TY+
Sbjct: 827 KAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYS 883



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 20/175 (11%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF+++   G  P+L TY+ LIN  CK+GR++  F +   +     +P  +   SL+   C
Sbjct: 726 LFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCC 785

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
                 EA  L   +        + +Y  LI GL            FE+M     E  V 
Sbjct: 786 KLGMFGEAVTLLDSMMECSHLAHLESYKLLICGL------------FEQMNKEKAE-AVF 832

Query: 159 CKP-------DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           C         D + +  + DGL K G+VD+  EL   M+         TY+ L++
Sbjct: 833 CSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQ 887


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/330 (36%), Positives = 178/330 (53%), Gaps = 10/330 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   + N +   LA+N+    V  LF  L      P+++T+NI+I+  CK G +     
Sbjct: 166 PPNTRTCNHILLRLARNRQGGLVRRLFDLLP----VPNVFTFNIVIDFLCKEGELVEARA 221

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  R+     +PD VT+ SLI G      + E   L +++R  GC  DV TY  LIN   
Sbjct: 222 LFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFS 281

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A + F EM       GVV   + +T+ST  D  CKEG V +A +LF +M+   
Sbjct: 282 KFGRMEKAYSYFGEMKRQ----GVVA--NVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRG 335

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+  TYTSL+ G C A   ++A  L  EM+ QG+ PNVVT+ V+++ LCK GK+ EA 
Sbjct: 336 MMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEAD 395

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L LM + GV+ +  +Y TL+ G  +     RA +L   M++ G   DV  YG LI G 
Sbjct: 396 NVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGL 455

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK+++++ A SL  +M   G+RP  V Y T
Sbjct: 456 CKDQKVDEAKSLLHKMAGCGLRPNTVIYTT 485



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 175/364 (48%), Gaps = 41/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    + V  L   +   G   D+ TYN LINCF K GR+   +  
Sbjct: 233 PDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSY 292

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G + R     + VTF++ +   C E  + EA  LF ++R  G  P+ FTYT+L++G C+
Sbjct: 293 FGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCK 352

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV--------------- 179
            G    A+ L +EM +     G+V  P+ +TY+ + DGLCKEG V               
Sbjct: 353 AGRLDDAIVLLDEMVHQ----GLV--PNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGV 406

Query: 180 --------------------DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                               ++A +L  +MK++ +  DV  Y +LI G C     +EAK 
Sbjct: 407 KANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKS 466

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  +M   G++PN V +  IM+ L K GK  EA  LL  ++  G +P+   Y  L+DG C
Sbjct: 467 LLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLC 526

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++ A   F  M   G   +V +Y  LI+G+CK   +  A+ L +EM+ KG+    V
Sbjct: 527 KAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKV 586

Query: 340 TYNT 343
            Y +
Sbjct: 587 VYTS 590



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 166/325 (51%), Gaps = 6/325 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +F+       K       + LF ++   G+ P+ +TY  L++  CK GR+    V+L 
Sbjct: 305 VVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLD 364

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VT+T ++ GLC E ++ EA  + + +   G K +   YTTLI+G     
Sbjct: 365 EMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNN 424

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           ++  AL+L  +M N   E       D   Y T+  GLCK+  VD+AK L  KM    + P
Sbjct: 425 NSERALDLLNQMKNKGMEL------DVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRP 478

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + V YT+++     A   +EA  L  +++D G QPNVVT+  +++ LCK G + EA    
Sbjct: 479 NTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHF 538

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M ++G+ P+   Y  L+DGFC  G +N+A  L   M   G   D   Y  LI+GY K 
Sbjct: 539 NKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQ 598

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
             ++ A +L ++M+  G++  +  Y
Sbjct: 599 ANLQDAFALKTKMIESGLQLDLYCY 623



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 160/359 (44%), Gaps = 41/359 (11%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R+    P   ++  L     K    D  + L   +   GL P++ TY ++++  CK G+
Sbjct: 331 MRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGK 390

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKG------------------------------- 96
           V+    VL  + R     + + +T+LI G                               
Sbjct: 391 VAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGT 450

Query: 97  ----LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
               LC + ++ EA +L  K+   G +P+   YTT+++ L + G    A+ L  ++ +  
Sbjct: 451 LIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSG 510

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                  +P+ +TY  + DGLCK G + +A   F KM++  ++P+V  YT+LI GFC   
Sbjct: 511 ------FQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIG 564

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             N+A  L  EM+D+G+  + V +  +++   K   + +A  L   MI+ G++ D   Y 
Sbjct: 565 SLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYT 624

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             + GFC    +  A+ +   M   G   D   Y  LI  Y K   +E A SL +EM S
Sbjct: 625 CFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMES 683


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 159/294 (54%), Gaps = 6/294 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD  TY  ++   CK  R+      +  +      PDA  +  ++ GLC E ++ EA  L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F K+      P+V TY TLINGLC+      A  LF+EMA G G       P  ++Y+T+
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMA-GKGYV-----PTEVSYNTL 120

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DG CK+  +  AK++F KM   N  P+VVTYT+LI G   +     A  +   M+ +GV
Sbjct: 121 IDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV 180

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PNV T++ +++  CK  ++DEA +LLE M+  G+ P    YN L++  C   ++  A +
Sbjct: 181 TPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFK 240

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LF  M    C   V +Y  L+   C +K+++GA  LY+EM++KG  P  +TY+T
Sbjct: 241 LFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDT 294



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 166/317 (52%), Gaps = 6/317 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           +PP   ++  +   L K K  D  L+  + + + G+ PD + YN +++  C+  +V    
Sbjct: 5   APPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEAR 64

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           ++  ++++    P+ VT+ +LI GLC   RI  A  LF ++   G  P   +Y TLI+G 
Sbjct: 65  LLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGF 124

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+    + A ++F++M   N      C P+ +TY+T+ DGL K G V  A E+   M  +
Sbjct: 125 CKKKDLVAAKDVFDKMVRSN------CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKK 178

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + P+V TY+ LI GFC     +EA  L  +M+ QG+ P VVT+N+++N LC+  K+++A
Sbjct: 179 GVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDA 238

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +L   M Q    P    YNTL+   C   +++ A  L+  M + GC  D  +Y  L  G
Sbjct: 239 FKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWG 298

Query: 313 YCKNKEIEGALSLYSEM 329
             +  ++  A  L  +M
Sbjct: 299 LTRAGKVHEAQELMEKM 315



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 144/281 (51%), Gaps = 6/281 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N +   L + +  +    LF+++    + P++ TYN LIN  CK  R+   + +
Sbjct: 42  PDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYEL 101

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +    + P  V++ +LI G C +  ++ A  +F K+    C P+V TYTTLI+GL +
Sbjct: 102 FKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSK 161

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  + + M       GV   P+  TYS + DG CK   VD+A +L  +M  + I
Sbjct: 162 SGKVQAAAEVLDGMVKK----GVT--PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGI 215

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VVTY  L+   C A+   +A  LF  M  +   P VVT+N ++  LC + ++D A R
Sbjct: 216 APTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHR 275

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           L   MI  G  PDA  Y+TL  G    G+V+ A+EL   M+
Sbjct: 276 LYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 316



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 9/195 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R +   P V ++  L   L+K+        +   +   G+ P++ TY+ LI+ F
Sbjct: 136 VFDKMVRSN-CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 194

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+ RV     +L +++     P  VT+  L+  LC   ++ +A  LF  +    C P V
Sbjct: 195 CKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTV 254

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            TY TL+  LC       A  L+ EM A G       C PDAITY T+  GL + G V +
Sbjct: 255 VTYNTLLRALCHHKQLDGAHRLYAEMIAKG-------CPPDAITYDTLAWGLTRAGKVHE 307

Query: 182 AKELFLKMKDENINP 196
           A+EL  KMK    NP
Sbjct: 308 AQELMEKMKLTKRNP 322


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 179/330 (54%), Gaps = 8/330 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP    FN+L     K     +   +F  +   GL P + ++N LI+  CK G V  GF 
Sbjct: 139 PPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + G +      PD  TF++LI GLC E R+ E + LF ++   G  P+  T+T LI+G C
Sbjct: 199 LKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQC 258

Query: 134 RTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           + G   +AL  F+ M A G        +PD +TY+ + +GLCK G + +A+ L  +M   
Sbjct: 259 KGGKVDLALKNFQMMLAQG-------VRPDLVTYNALINGLCKVGDLKEARRLVNEMSAS 311

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PD +T+T+LI G C   D   A  +   M+++G++ + V F V+++ LC++G++ +A
Sbjct: 312 GLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDA 371

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            R+L  M+  G +PD   Y  ++D FC  G V    +L   M+S+G +  V +Y  L+NG
Sbjct: 372 ERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNG 431

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            CK  +++ A  L   ML+ G+ P  +TYN
Sbjct: 432 LCKQGQVKNAKMLLDAMLNVGVAPNDITYN 461



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 6/297 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  P+ + +N+L++ FCK+G V    +V   I +    P  V+F +LI G C    + E 
Sbjct: 137 GYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEG 196

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L   + +    PDVFT++ LINGLC+ G       LF+EM       G+V  P+ +T+
Sbjct: 197 FRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGK----GLV--PNGVTF 250

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + + DG CK G VD A + F  M  + + PD+VTY +LI G C   D  EA+ L  EM  
Sbjct: 251 TVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSA 310

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G++P+ +TF  +++  CK G M+ A  +   M++ G+  D   +  L+ G C  GRV+ 
Sbjct: 311 SGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHD 370

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A+ +   M S G   D  +Y ++++ +CK   +     L  EM S G  P VVTYN 
Sbjct: 371 AERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNA 427



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 155/302 (51%), Gaps = 6/302 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K    +    L   + S  + PD++T++ LIN  CK GR+  G ++
Sbjct: 175 PTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLL 234

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+ VTFT LI G C   ++  A   F  + A G +PD+ TY  LINGLC+
Sbjct: 235 FDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCK 294

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  EM+          +PD IT++T+ DG CK G ++ A E+  +M +E I
Sbjct: 295 VGDLKEARRLVNEMSASG------LRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGI 348

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V +T LI G C     ++A+ +  +M+  G +P+  T+ ++++  CK G +    +
Sbjct: 349 ELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFK 408

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M   G  P    YN LM+G C  G+V  AK L  +M + G   +  +Y IL+ G+ 
Sbjct: 409 LLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHS 468

Query: 315 KN 316
           K+
Sbjct: 469 KH 470



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/265 (34%), Positives = 140/265 (52%), Gaps = 6/265 (2%)

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L S + P+   F  L+ G C    +  A  +F ++   G +P V ++ TLI+G C+ G
Sbjct: 132 EVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAG 191

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
                  L      G  E   VC PD  T+S + +GLCKEG +D+   LF +M  + + P
Sbjct: 192 AVEEGFRL-----KGVMESERVC-PDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVP 245

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VT+T LI G C     + A   F  M+ QGV+P++VT+N ++N LCK G + EA RL+
Sbjct: 246 NGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLV 305

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M   G+RPD   + TL+DG C  G +  A E+   M   G   D  ++ +LI+G C++
Sbjct: 306 NEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRD 365

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
             +  A  +  +MLS G +P   TY
Sbjct: 366 GRVHDAERMLRDMLSAGFKPDDPTY 390



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 127/237 (53%), Gaps = 6/237 (2%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
            + A + ++   G  P+ F +  L++G C+ G    A  +F+E+           +P  +
Sbjct: 125 RSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRG------LRPTVV 178

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           +++T+  G CK G V++   L   M+ E + PDV T+++LI G C     +E   LF EM
Sbjct: 179 SFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEM 238

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
             +G+ PN VTF V+++  CK GK+D A +  ++M+  GVRPD   YN L++G C  G +
Sbjct: 239 CGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDL 298

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             A+ L   M ++G   D  ++  LI+G CK  ++E AL +   M+ +GI    V +
Sbjct: 299 KEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAF 355



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 6/233 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F +L     K    D  L  F+ + + G+ PDL TYN LIN  CK+G +     +
Sbjct: 245 PNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRL 304

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  S   PD +TFT+LI G C    +  A  +  ++   G + D   +T LI+GLCR
Sbjct: 305 VNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCR 364

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +  +M +         KPD  TY+ + D  CK+G V    +L  +M+ +  
Sbjct: 365 DGRVHDAERMLRDMLSAG------FKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGH 418

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            P VVTY +L+ G C       AK L   M++ GV PN +T+N+++    K+G
Sbjct: 419 VPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHG 471



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 94/165 (56%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           ++++   +L++ D    P+   +  L+ GFC       A+ +F E+  +G++P VV+FN 
Sbjct: 123 LERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNT 182

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++  CK G ++E  RL  +M    V PD   ++ L++G C  GR++    LF  M   G
Sbjct: 183 LISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKG 242

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + +  ++ +LI+G CK  +++ AL  +  ML++G+RP +VTYN 
Sbjct: 243 LVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 287



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 9/153 (5%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +F +L   L ++        + + + S G  PD  TY ++++CFCK G V  GF +L  +
Sbjct: 354 AFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEM 413

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P  VT+ +L+ GLC + ++  A  L   +   G  P+  TY  L+ G  + G +
Sbjct: 414 QSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSS 473

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
            V +++F      N E G+V   D  +Y+ + +
Sbjct: 474 -VDVDIF------NSEKGLV--KDYASYTALVN 497


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 184/343 (53%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D ML+     P V ++N+L   L +    D   +L   + S  + PD +TY+IL +
Sbjct: 250 FRLRDQMLQ-DGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFD 308

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              + G       + G  L+      A T + L+ GLC + ++ +A  +   L   G  P
Sbjct: 309 GLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVP 368

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               Y TLING C+      A ++FE+M + +       +PD ITY+ + +GLCK   + 
Sbjct: 369 TTAIYNTLINGYCQVRDLQGAFSIFEQMKSRH------IRPDHITYNALINGLCKMEMIT 422

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A++L ++M+   ++P V T+ +LI  +  A    +   +  +M D+G++ NV++F  ++
Sbjct: 423 EAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVV 482

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
              CKNGK+ EA  +L+ MI   V P+A VYN+++D +  +G   +A  L   M+S+G  
Sbjct: 483 KAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVS 542

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +F+Y +L+ G CKN +I+ A  L   + ++G+RP VV+YNT
Sbjct: 543 ASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNT 585



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 166/331 (50%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S N+L   L     +  V + F  L + G  PD + +N  +      G +     +
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 75  LGRILRS--CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           L R+ RS     PDA ++  +I GL    +  +A  +F ++   G  P+  TY T+I+G 
Sbjct: 181 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGH 240

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            + G       L ++M   +G      KP+ +TY+ +  GLC+ G +D+ + L  +M   
Sbjct: 241 VKGGDLEAGFRLRDQMLQ-DGR-----KPNVVTYNVLLSGLCRAGRMDETRALMDEMTSY 294

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           ++ PD  TY+ L  G     D      LF E + +GV     T ++++N LCK+GK+ +A
Sbjct: 295 SMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKA 354

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            ++LE+++  G+ P  ++YNTL++G+C    +  A  +F  M+S     D  +Y  LING
Sbjct: 355 EQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALING 414

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            CK + I  A  L  EM   G+ P+V T+NT
Sbjct: 415 LCKMEMITEAEDLVMEMEKSGVDPSVETFNT 445



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 164/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ILF  L +     T+LSLF      G+    YT +IL+N  CK G+V+    V
Sbjct: 298 PDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQV 357

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   P    + +LI G C    +  A ++F ++++   +PD  TY  LINGLC+
Sbjct: 358 LEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCK 417

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A +L  EM            P   T++T+ D   + G ++K   +   M+D+ I
Sbjct: 418 MEMITEAEDLVMEMEKSG------VDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGI 471

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +V+++ S+++ FC      EA  +  +M+ + V PN   +N I++   ++G  ++A  
Sbjct: 472 KSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFL 531

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M   GV      YN L+ G C   +++ A+EL  ++ + G   DV SY  +I+  C
Sbjct: 532 LVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACC 591

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              + + AL L  EM    IRPT+ TY+
Sbjct: 592 NKGDTDRALELLQEMHKYDIRPTLRTYH 619



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N +     ++   +    L +++ S G+   ++TYN+L+   CK  ++     +
Sbjct: 508 PNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEEL 567

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PD V++ ++I   C +     A  L  ++  +  +P + TY  L++ L  
Sbjct: 568 IYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGS 627

Query: 135 TGHTIVALNLFEEMANGNGE-----FGVVCKPDAITYS 167
            G       L++ M + N E     +G  C+ ++   S
Sbjct: 628 AGRVHDMECLYQHMVHKNVEPSSSIYGTRCENESKVAS 665


>gi|356561399|ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 422

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 197/375 (52%), Gaps = 48/375 (12%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ML M  +PP +  FN + G   K K+Y   +SL K++   G+ P+L T NILINCFC
Sbjct: 42  FNRMLLMRHTPP-IIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLVTLNILINCFC 100

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +G ++  F VLG+IL+  + P+ +T T+LIKGLC +  + ++     KL A G + +  
Sbjct: 101 HLGHMAFSFSVLGKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKLVAQGFQINHV 160

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +  TL+NGLC+ G    A+ L   + + +    VV       Y+TI DGLCK+  V++A 
Sbjct: 161 SCGTLLNGLCKIGEMRGAMKLLRVIEDRSTITNVV------MYNTIIDGLCKDKLVNEAY 214

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M      P+V+TY +LI GFC A    EA  L  EM+ + + P+V T+N++M+ L
Sbjct: 215 DLYSEMDVRGNFPNVITYHTLICGFCLAGQLMEAFGLLKEMILKNIDPDVYTYNILMDAL 274

Query: 244 CKNGKMDEASRLLELMIQIGVR---PDASVYNTLMDGFC--------------------- 279
           CK GK    S  L+L+ +I  R    D   Y +L+DG C                     
Sbjct: 275 CKEGK----SYALDLIDEIHRRRQPADVVTYTSLLDGXCKNXYLDKAIALFKKMKERRIQ 330

Query: 280 --------LT-----GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
                   LT     GR+  A+E F  +   G   DV++Y ++I+G CK   ++ AL++ 
Sbjct: 331 PNVYTHSXLTGCVKGGRLKNAQEFFQHLLVKGYCIDVWTYTVMISGLCKEGMLDEALAMK 390

Query: 327 SEMLSKGIRPTVVTY 341
            +M   G  P  VT+
Sbjct: 391 XKMEDNGCIPNAVTF 405



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 8/236 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N +   L K+K  +    L+  ++  G FP++ TY+ LI  FC  G++   F +L 
Sbjct: 194 VVMYNTIIDGLCKDKLVNEAYDLYSEMDVRGNFPNVITYHTLICGFCLAGQLMEAFGLLK 253

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     PD  T+  L+  LC E +   A  L  ++       DV TYT+L++G C+  
Sbjct: 254 EMILKNIDPDVYTYNILMDALCKEGK-SYALDLIDEIHRRRQPADVVTYTSLLDGXCKNX 312

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +   A+ LF++M           +P+  T+S +T G  K G +  A+E F  +  +    
Sbjct: 313 YLDKAIALFKKMKERR------IQPNVYTHSXLT-GCVKGGRLKNAQEFFQHLLVKGYCI 365

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           DV TYT +I G C     +EA  +  +M D G  PN VTF +I+  L +  + D+A
Sbjct: 366 DVWTYTVMISGLCKEGMLDEALAMKXKMEDNGCIPNAVTFEIIICSLFEKDENDKA 421



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 116/238 (48%), Gaps = 6/238 (2%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           +A + F ++      P +  +  ++    +  +   A++L ++M     E      P+ +
Sbjct: 37  DAVSQFNRMLLMRHTPPIIKFNKILGSPVKMKYYPAAISLSKQMEVKGIE------PNLV 90

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T + + +  C  G +  +  +  K+      P+ +T T+LI+G C  ++  ++     ++
Sbjct: 91  TLNILINCFCHLGHMAFSFSVLGKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKL 150

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + QG Q N V+   ++N LCK G+M  A +LL ++       +  +YNT++DG C    V
Sbjct: 151 VAQGFQINHVSCGTLLNGLCKIGEMRGAMKLLRVIEDRSTITNVVMYNTIIDGLCKDKLV 210

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           N A +L+  M+  G   +V +Y  LI G+C   ++  A  L  EM+ K I P V TYN
Sbjct: 211 NEAYDLYSEMDVRGNFPNVITYHTLICGFCLAGQLMEAFGLLKEMILKNIDPDVYTYN 268



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 90/183 (49%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P  I ++ I     K  +   A  L  +M+ + I P++VT   LI  FC+      +  +
Sbjct: 52  PPIIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLVTLNILINCFCHLGHMAFSFSV 111

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
             +++  G QPN +T   ++  LC   ++ ++    + ++  G + +     TL++G C 
Sbjct: 112 LGKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKLVAQGFQINHVSCGTLLNGLCK 171

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G +  A +L   +E    + +V  Y  +I+G CK+K +  A  LYSEM  +G  P V+T
Sbjct: 172 IGEMRGAMKLLRVIEDRSTITNVVMYNTIIDGLCKDKLVNEAYDLYSEMDVRGNFPNVIT 231

Query: 341 YNT 343
           Y+T
Sbjct: 232 YHT 234



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/168 (19%), Positives = 66/168 (39%), Gaps = 35/168 (20%)

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           +  VD A   F +M      P ++ +  ++        +  A  L  +M  +G++PN+VT
Sbjct: 32  DNVVDDAVSQFNRMLLMRHTPPIIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLVT 91

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            N+++N  C  G M  +  +L  ++++G +P+     TL                     
Sbjct: 92  LNILINCFCHLGHMAFSFSVLGKILKLGYQPNTLTLTTL--------------------- 130

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                         I G C   E+  +L  + +++++G +   V+  T
Sbjct: 131 --------------IKGLCLKDEVRKSLHFHDKLVAQGFQINHVSCGT 164


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 176/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFNIL G   +       +  +K +    + PD+ +++ LI  F + G +      
Sbjct: 260 PDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAY 319

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD V +T +I G C    + EA  +  ++  FGC PDV TY TL+NGLC+
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCK 379

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A  L  EM     E GV   PD  T++T+  G C++G  + A +LF  +  + +
Sbjct: 380 QHRLLDAEKLLNEME----ERGVT--PDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRL 433

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY SLI G C   D  +A  L+ +M  + + PN +T++++++  C+ G++++A  
Sbjct: 434 RPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFG 493

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ M++ G  P+   YN+++ G+C +G V + ++    M  +    D+ ++  LI+GY 
Sbjct: 494 FLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYI 553

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K + + GA ++++ M  + +RP  VTYN
Sbjct: 554 KEENMHGAFNVFNIMEKEMVRPDAVTYN 581



 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 170/327 (51%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SF+ L G  ++    D   +  + +  +GL PD   Y ++I  FC+ G +S    V
Sbjct: 295 PDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD VT+ +L+ GLC + R+++A  L  ++   G  PD+ T+TTLI+G CR
Sbjct: 355 RDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCR 414

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL LF+ +           +PD +TY+++ DG+C++G + KA EL+  M    I
Sbjct: 415 QGNFENALQLFDTLLRQR------LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREI 468

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +TY+ LI   C      +A     EM+ +G  PN+ T+N I+   C++G + +  +
Sbjct: 469 LPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQ 528

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ M Q  V PD   +NTL+ G+     ++ A  +F  ME      D  +Y ++ING+ 
Sbjct: 529 FLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFS 588

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +   ++ A  ++  M   GI P   TY
Sbjct: 589 EQGNMQDAGRVFKGMGDSGIEPDRYTY 615



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 175/358 (48%), Gaps = 37/358 (10%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           + NI+     K   +D   ++   +    +FPD+ T+N+LI+   + G V     ++  +
Sbjct: 159 TLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P  VT+ S++KGLC   R  +A  +F  +      PDV ++  LI G CR G  
Sbjct: 219 ANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 139 IVALNLFEEMANG------------------NGEF-----------GVVCKPDAITYSTI 169
             A+  ++EM +                    GE            G+   PD + Y+ +
Sbjct: 279 KEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMV 338

Query: 170 TDGLCKEGFVDKAKELFLKMKDENIN----PDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
             G C+ G + +A    L+++DE +     PDVVTY +L+ G C  +   +A+ L  EM 
Sbjct: 339 IGGFCRAGSMSEA----LRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEME 394

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++GV P++ TF  +++  C+ G  + A +L + +++  +RPD   YN+L+DG C  G + 
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLA 454

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +A EL+  M +   + +  +Y ILI+ +C+  ++E A     EM+ KG  P + TYN+
Sbjct: 455 KANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNS 512



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 141/289 (48%), Gaps = 8/289 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K         L   +   G+ PDL T+  LI+ +C+ G       +
Sbjct: 365 PDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQL 424

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +LR    PD VT+ SLI G+C +  + +A  L+  + A    P+  TY+ LI+  C 
Sbjct: 425 FDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCE 484

Query: 135 TGHTIVALNLFEEMAN-GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G    A    +EM   GN        P+  TY++I  G C+ G V K ++   KM+ +N
Sbjct: 485 KGQVEDAFGFLDEMVKKGN-------LPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDN 537

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD++T+ +LI G+    + + A  +F  M  + V+P+ VT+N+I+N   + G M +A 
Sbjct: 538 VFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAG 597

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           R+ + M   G+ PD   Y +L++G    G   +A +L   M   G   D
Sbjct: 598 RVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 156/341 (45%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I   +L   P+P P   F++L     +++        F+ L    +       N L+   
Sbjct: 74  IVSSLLASSPTPQPQV-FDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVL 132

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + G           +L S    +A T   ++   C       A  + +++      PDV
Sbjct: 133 SRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDV 192

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  LI+   R G    A+ L + MAN         KP  +TY+++  GLCK    DKA
Sbjct: 193 VTHNVLIDARFRAGDVDAAIALVDSMANRG------LKPGIVTYNSVLKGLCKHRRFDKA 246

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           KE+F  M   ++ PDV ++  LI GFC   +  EA   + EM  + V P+VV+F+ ++  
Sbjct: 247 KEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGL 306

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             + G+MD A   L  M  +G+ PD  +Y  ++ GFC  G ++ A  +   M   GC+ D
Sbjct: 307 FSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPD 366

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +Y  L+NG CK   +  A  L +EM  +G+ P + T+ T
Sbjct: 367 VVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTT 407



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 71/161 (44%)

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +E+   +   +  P    +  LIR +  +    EA   F  ++D  V       N ++  
Sbjct: 72  REIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAV 131

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L + G    A     L++      +A   N ++  +C T   + A  +   ME      D
Sbjct: 132 LSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPD 191

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V ++ +LI+   +  +++ A++L   M ++G++P +VTYN+
Sbjct: 192 VVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNS 232


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 174/338 (51%), Gaps = 7/338 (2%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           + +R+        +++ +   L K    +    L +++      PD  TY  ++   CK 
Sbjct: 69  HTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAP-PDALTYGPIVERLCKT 127

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
            R+      +  +      PDA  +  ++ GLC E ++ EA  LF K+      P+V TY
Sbjct: 128 KRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTY 187

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            TLINGLC+      A  LF+EMA G G       P  ++Y+T+ DG CK+  +  AK++
Sbjct: 188 NTLINGLCKAWRIETAYELFKEMA-GKGYV-----PTEVSYNTLIDGFCKKKDLVAAKDV 241

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F KM   N  P+VVTYT+LI G   +     A  +   M+ +GV PNV T++ +++  CK
Sbjct: 242 FDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCK 301

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
             ++DEA +LLE M+  G+ P    YN L++  C   ++  A +LF  M    C   V +
Sbjct: 302 VRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVT 361

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y  L+   C +K+++GA  LY+EM++KG  P  +TY+T
Sbjct: 362 YNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDT 399



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 173/324 (53%), Gaps = 7/324 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           + IL  CL K  ++D    L   +           Y+ +IN  CK+ RV     ++ ++ 
Sbjct: 48  YGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMA 107

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R    PDA+T+  +++ LC   RI +A A   ++   G KPD F Y  +++GLC+     
Sbjct: 108 RYA-PPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVE 166

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  LFE+M            P+ +TY+T+ +GLCK   ++ A ELF +M  +   P  V
Sbjct: 167 EARLLFEKMVKQR------INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEV 220

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           +Y +LI GFC   D   AK +F +M+     PNVVT+  +++ L K+GK+  A+ +L+ M
Sbjct: 221 SYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGM 280

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           ++ GV P+ + Y+ L+DGFC   RV+ A +L   M + G    V +Y IL+N  C+  ++
Sbjct: 281 VKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKL 340

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           E A  L+  M  +   PTVVTYNT
Sbjct: 341 EDAFKLFRGMAQRRCHPTVVTYNT 364



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 166/317 (52%), Gaps = 6/317 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           +PP   ++  +   L K K  D  L+  + + + G+ PD + YN +++  C+  +V    
Sbjct: 110 APPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEAR 169

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           ++  ++++    P+ VT+ +LI GLC   RI  A  LF ++   G  P   +Y TLI+G 
Sbjct: 170 LLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGF 229

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+    + A ++F++M   N      C P+ +TY+T+ DGL K G V  A E+   M  +
Sbjct: 230 CKKKDLVAAKDVFDKMVRSN------CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKK 283

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + P+V TY+ LI GFC     +EA  L  +M+ QG+ P VVT+N+++N LC+  K+++A
Sbjct: 284 GVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDA 343

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +L   M Q    P    YNTL+   C   +++ A  L+  M + GC  D  +Y  L  G
Sbjct: 344 FKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWG 403

Query: 313 YCKNKEIEGALSLYSEM 329
             +  ++  A  L  +M
Sbjct: 404 LTRAGKVHEAQELMEKM 420



 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 170/328 (51%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN +    AK    + V  +++ +   G       Y ILI+C CK+G     + +
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +    F   A+ ++++I  LC  +R+ EA  L  K+  +   PD  TY  ++  LC+
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGPIVERLCK 126

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     AL   EEMA          KPDA  Y+ +  GLC+E  V++A+ LF KM  + I
Sbjct: 127 TKRIDDALATVEEMATRG------IKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 180

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NP+VVTY +LI G C A     A  LF EM  +G  P  V++N +++  CK   +  A  
Sbjct: 181 NPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKD 240

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M++    P+   Y TL+DG   +G+V  A E+   M   G   +V +Y  LI+G+C
Sbjct: 241 VFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFC 300

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K + ++ A  L  +M+++GI PTVVTYN
Sbjct: 301 KVRRVDEAHKLLEQMVTQGIAPTVVTYN 328



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 144/281 (51%), Gaps = 6/281 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N +   L + +  +    LF+++    + P++ TYN LIN  CK  R+   + +
Sbjct: 147 PDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYEL 206

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +    + P  V++ +LI G C +  ++ A  +F K+    C P+V TYTTLI+GL +
Sbjct: 207 FKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSK 266

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  + + M       GV   P+  TYS + DG CK   VD+A +L  +M  + I
Sbjct: 267 SGKVQAAAEVLDGMVKK----GVT--PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGI 320

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VVTY  L+   C A+   +A  LF  M  +   P VVT+N ++  LC + ++D A R
Sbjct: 321 APTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHR 380

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           L   MI  G  PDA  Y+TL  G    G+V+ A+EL   M+
Sbjct: 381 LYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 421



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 145/295 (49%), Gaps = 7/295 (2%)

Query: 48  LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA 107
           + P   T+N + + F K GR+     V   ++ + +T  A  +  LI  LC      EA 
Sbjct: 6   VIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAY 65

Query: 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
            L   +R    K     Y+T+IN LC+      A  L E+MA           PDA+TY 
Sbjct: 66  KLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMAR-------YAPPDALTYG 118

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
            I + LCK   +D A     +M    I PD   Y  ++ G C      EA+ LF +M+ Q
Sbjct: 119 PIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQ 178

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
            + PNVVT+N ++N LCK  +++ A  L + M   G  P    YNTL+DGFC    +  A
Sbjct: 179 RINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAA 238

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K++F  M  + C+ +V +Y  LI+G  K+ +++ A  +   M+ KG+ P V TY+
Sbjct: 239 KDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYS 293



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 101/218 (46%), Gaps = 36/218 (16%)

Query: 161 PDAITYSTITDG-----------------------------------LCKEGFVDKAKEL 185
           P A T++T+ DG                                   LCK G  D+A +L
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
              M+ +      + Y+++I   C  N   EA+ L IE M +   P+ +T+  I+  LCK
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEAREL-IEKMARYAPPDALTYGPIVERLCK 126

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
             ++D+A   +E M   G++PDA +YN ++ G C   +V  A+ LF  M       +V +
Sbjct: 127 TKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVT 186

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y  LING CK   IE A  L+ EM  KG  PT V+YNT
Sbjct: 187 YNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 224



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 9/195 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R +   P V ++  L   L+K+        +   +   G+ P++ TY+ LI+ F
Sbjct: 241 VFDKMVRSN-CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 299

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+ RV     +L +++     P  VT+  L+  LC   ++ +A  LF  +    C P V
Sbjct: 300 CKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTV 359

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            TY TL+  LC       A  L+ EM A G       C PDAITY T+  GL + G V +
Sbjct: 360 VTYNTLLRALCHHKQLDGAHRLYAEMIAKG-------CPPDAITYDTLAWGLTRAGKVHE 412

Query: 182 AKELFLKMKDENINP 196
           A+EL  KMK    NP
Sbjct: 413 AQELMEKMKLTKRNP 427



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%)

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           V P A+ +NT+ DGF   GR+ + KE++  M   G       YGILI+  CK    + A 
Sbjct: 6   VIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAY 65

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            L   M  K  +   + Y+T
Sbjct: 66  KLLHTMRLKRFKRKAIAYST 85


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 177/338 (52%), Gaps = 12/338 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ + G L      D    LF+ + S  + PD++TY ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    P+ VT+T+LI       ++  A  LF  + + GC P+V TYT LI+G C+
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 135 TGHTIVALNLFEEMANGNGEF-----------GVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +G    A  ++  M  GN +            G +  P+  TY  + DGLCK   V +A+
Sbjct: 598 SGQIEKACQIYARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEAR 656

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L   M  E   P+ + Y +LI GFC     +EA+ +F +M ++G  PNV T++ +++ L
Sbjct: 657 DLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRL 716

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K+ ++D A ++L  M++    P+  +Y  ++DG C  G+ + A  L   ME  GC  +V
Sbjct: 717 FKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNV 776

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +Y  +I+G+ K  +++  L L  +M +KG  P  VTY
Sbjct: 777 VTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTY 814



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 172/368 (46%), Gaps = 40/368 (10%)

Query: 5   DYMLRMHPSP--PPVCSFNILF-GCLAKNKHYDTVLSLFKRLNSI----GLFPDLYTYNI 57
           D++ RM  S   P V ++ IL  GCL K +     L   KR+ S+    G +P    +N 
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRKRQ-----LGRCKRILSMMITEGCYPSRRIFNS 374

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           LI+ +C+ G  S  + +L ++      P  V +  LI G+C   ++     L    +A+G
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434

Query: 118 CKPDVFTYTTLING------LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
              D       +N       LC  G    A ++  EM +     G +  PD  TYS +  
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK----GFI--PDTSTYSKVIG 488

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
            LC    VD A  LF +MK  ++ PDV TYT LI  FC      +A+  F EM+  G  P
Sbjct: 489 LLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAP 548

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           NVVT+  +++   K  KM  A+ L E+M+  G  P+   Y  L+DG C +G++ +A +++
Sbjct: 549 NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIY 608

Query: 292 VSMESN--------------GCMRD--VFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
             M  N              G +RD  +F+YG L++G CK  +++ A  L   M  +G  
Sbjct: 609 ARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCE 668

Query: 336 PTVVTYNT 343
           P  + Y+ 
Sbjct: 669 PNHIVYDA 676



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 30/347 (8%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL---- 75
           FN L     ++  Y     L K++   G  P    YNILI   C   ++ P   VL    
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKL-PSLDVLELAE 430

Query: 76  ---GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
              G +L +    + V  ++L + LC   +  +A ++  ++ + G  PD  TY+ +I  L
Sbjct: 431 KAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLL 490

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C       A  LFEEM + +    VV  PD  TY+ + D  CK G + +A++ F +M  +
Sbjct: 491 CNASKVDNAFLLFEEMKSNH----VV--PDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              P+VVTYT+LI  +  A   + A  LF  M+ +G  PNVVT+  +++  CK+G++++A
Sbjct: 545 GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKA 604

Query: 253 SRLLELMIQIGVRPDASVY----------------NTLMDGFCLTGRVNRAKELFVSMES 296
            ++   M      PD  +Y                  L+DG C   +V  A++L   M  
Sbjct: 605 CQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSV 664

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            GC  +   Y  LI+G+CK  +++ A  ++++M  +G  P V TY++
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 151/288 (52%), Gaps = 20/288 (6%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P+++TY  L++  CK  +V     +L  +      P+ + + +LI G C   ++ EA  +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           FTK+   G  P+V+TY++LI+ L +     +AL +   M   +      C P+ I Y+ +
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS------CAPNVIIYTEM 747

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DGLCK G  D+A  L   M+++  +P+VVTYT++I GF  A   ++   L  +M  +G 
Sbjct: 748 IDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGC 807

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PN VT+ V++N  C  G +D+A +LL+ M Q       + Y  +++GF      NR  E
Sbjct: 808 APNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF------NR--E 859

Query: 290 LFVSM------ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             +S+        N  +  + +Y ILI+ +CK   +E AL L+ EM S
Sbjct: 860 FIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSS 907



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 164/370 (44%), Gaps = 50/370 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     +    DT   + + ++  G   D YT    ++  CK GR       
Sbjct: 230 PSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA--- 286

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY--------- 125
           L  I +  F  D V +T +I GLC  S   EA    +++R+  C P+V TY         
Sbjct: 287 LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLR 346

Query: 126 --------------------------TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                                      +LI+  CR+G    A  L ++M    G+ G  C
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM----GDCG--C 400

Query: 160 KPDAITYSTITDGLCKE------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           +P  + Y+ +  G+C          ++ A++ + +M D ++  + V  ++L R  C A  
Sbjct: 401 QPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGK 460

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +  EMM +G  P+  T++ ++  LC   K+D A  L E M    V PD   Y  
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+D FC  G + +A++ F  M  +GC  +V +Y  LI+ Y K +++  A  L+  MLS+G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 334 IRPTVVTYNT 343
             P VVTY  
Sbjct: 581 CIPNVVTYTA 590



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 10/314 (3%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFC----KMGRVSPGFVVLGRILRSCFTPDAV 88
           ++  +    R+ S    P++ TY IL+ C C    ++GR      ++  I   C+ P   
Sbjct: 315 FEEAMDFLSRMRSSSCIPNVVTYRILL-CGCLRKRQLGRCKRILSMM--ITEGCY-PSRR 370

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
            F SLI   C       A  L  K+   GC+P    Y  LI G+C     + +L++ E  
Sbjct: 371 IFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGIC-GNEKLPSLDVLELA 429

Query: 149 ANGNGE-FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
               GE        + +  S +   LC  G  +KA  +  +M  +   PD  TY+ +I  
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C A+  + A  LF EM    V P+V T+ ++++  CK G + +A +  + M++ G  P+
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y  L+  +    +++ A ELF  M S GC+ +V +Y  LI+G+CK+ +IE A  +Y+
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 328 EMLSKGIRPTVVTY 341
            M      P V  Y
Sbjct: 610 RMRGNADIPDVDMY 623



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 15/293 (5%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
           N+LI   C+ G  +     LGR+    + P  +T+ +L++      R+  A  +  ++  
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
            G   D +T    ++ LC+ G    AL L E+      EF    K D + Y+ +  GLC+
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIEKE-----EF----KLDTVIYTQMISGLCE 311

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
               ++A +   +M+  +  P+VVTY  L+ G          K +   M+ +G  P+   
Sbjct: 312 ASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRI 371

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           FN +++  C++G    A +LL+ M   G +P   VYN L+ G C   ++     L ++ +
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEK 431

Query: 296 SNGCMRDVF------SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + G M D        +   L    C   + E A S+  EM+SKG  P   TY+
Sbjct: 432 AYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYS 484



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 119/279 (42%), Gaps = 29/279 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K+K  D  L +  R+      P++  Y  +I+  CK+G+    + +
Sbjct: 704 PNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRL 763

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      P+ VT+T++I G     ++ +   L  ++ A GC P+  TY  LIN  C 
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 135 TGHTIVALNLFEEMANG----------------NGEFGV-----------VCKPDAITYS 167
            G    A  L +EM                   N EF +           V  P    Y 
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYR 883

Query: 168 TITDGLCKEGFVDKAKELFLKMKD--ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
            + D  CK G ++ A EL  +M         D   Y+SLI     A+  ++A  L+ +M+
Sbjct: 884 ILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMI 943

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
            +G  P +  F  ++  L +  + +EA +L + + Q+ V
Sbjct: 944 KRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQMMV 982


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 177/339 (52%), Gaps = 12/339 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ + G L      D    LF+ + S  + PD++TY ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    P+ VT+T+LI       ++  A  LF  + + GC P+V TYT LI+G C+
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 135 TGHTIVALNLFEEMANGNGEF-----------GVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +G    A  ++  M  GN +            G +  P+  TY  + DGLCK   V +A+
Sbjct: 598 SGQIEKACQIYARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEAR 656

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L   M  E   P+ + Y +LI GFC     +EA+ +F +M ++G  PNV T++ +++ L
Sbjct: 657 DLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRL 716

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K+ ++D A ++L  M++    P+  +Y  ++DG C  G+ + A  L   ME  GC  +V
Sbjct: 717 FKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNV 776

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +Y  +I+G+ K  +++  L L  +M +KG  P  VTY 
Sbjct: 777 VTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYR 815



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 172/368 (46%), Gaps = 40/368 (10%)

Query: 5   DYMLRMHPSP--PPVCSFNILF-GCLAKNKHYDTVLSLFKRLNSI----GLFPDLYTYNI 57
           D++ RM  S   P V ++ IL  GCL K +     L   KR+ S+    G +P    +N 
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRKRQ-----LGRCKRILSMMITEGCYPSRRIFNS 374

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           LI+ +C+ G  S  + +L ++      P  V +  LI G+C   ++     L    +A+G
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434

Query: 118 CKPDVFTYTTLING------LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
              D       +N       LC  G    A ++  EM +     G +  PD  TYS +  
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK----GFI--PDTSTYSKVIG 488

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
            LC    VD A  LF +MK  ++ PDV TYT LI  FC      +A+  F EM+  G  P
Sbjct: 489 LLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAP 548

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           NVVT+  +++   K  KM  A+ L E+M+  G  P+   Y  L+DG C +G++ +A +++
Sbjct: 549 NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIY 608

Query: 292 VSMESN--------------GCMRD--VFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
             M  N              G +RD  +F+YG L++G CK  +++ A  L   M  +G  
Sbjct: 609 ARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCE 668

Query: 336 PTVVTYNT 343
           P  + Y+ 
Sbjct: 669 PNHIVYDA 676



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 30/347 (8%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL---- 75
           FN L     ++  Y     L K++   G  P    YNILI   C   ++ P   VL    
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKL-PSLDVLELAE 430

Query: 76  ---GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
              G +L +    + V  ++L + LC   +  +A ++  ++ + G  PD  TY+ +I  L
Sbjct: 431 KAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLL 490

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C       A  LFEEM + +    VV  PD  TY+ + D  CK G + +A++ F +M  +
Sbjct: 491 CNASKVDNAFLLFEEMKSNH----VV--PDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              P+VVTYT+LI  +  A   + A  LF  M+ +G  PNVVT+  +++  CK+G++++A
Sbjct: 545 GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKA 604

Query: 253 SRLLELMIQIGVRPDASVY----------------NTLMDGFCLTGRVNRAKELFVSMES 296
            ++   M      PD  +Y                  L+DG C   +V  A++L   M  
Sbjct: 605 CQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSV 664

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            GC  +   Y  LI+G+CK  +++ A  ++++M  +G  P V TY++
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 164/370 (44%), Gaps = 50/370 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     +    DT   + + ++  G   D YT    ++  CK GR       
Sbjct: 230 PSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA--- 286

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY--------- 125
           L  I +  F  D V +T +I GLC  S   EA    +++R+  C P+V TY         
Sbjct: 287 LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLR 346

Query: 126 --------------------------TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                                      +LI+  CR+G    A  L ++M    G+ G  C
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM----GDCG--C 400

Query: 160 KPDAITYSTITDGLCKE------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           +P  + Y+ +  G+C          ++ A++ + +M D ++  + V  ++L R  C A  
Sbjct: 401 QPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGK 460

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +  EMM +G  P+  T++ ++  LC   K+D A  L E M    V PD   Y  
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+D FC  G + +A++ F  M  +GC  +V +Y  LI+ Y K +++  A  L+  MLS+G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 334 IRPTVVTYNT 343
             P VVTY  
Sbjct: 581 CIPNVVTYTA 590



 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 150/288 (52%), Gaps = 20/288 (6%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P+++TY  L++  CK  +V     +L  +      P+ + + +LI G C   ++ EA  +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           FTK+   G  P+V+TY++LI+ L +     +AL +   M   +      C P+ I Y+ +
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS------CAPNVIIYTEM 747

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DGLCK G  D+A  L   M+++  +P+VVTYT++I GF  A   ++   L  +M  +G 
Sbjct: 748 IDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGC 807

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PN VT+ V++N  C  G +D+A +LL+ M Q       + Y  +++GF      NR  E
Sbjct: 808 APNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF------NR--E 859

Query: 290 LFVSM------ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             +S+        N  +  + +Y ILI+ +CK   +E AL L+  M S
Sbjct: 860 FIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSS 907



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 10/314 (3%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFC----KMGRVSPGFVVLGRILRSCFTPDAV 88
           ++  +    R+ S    P++ TY IL+ C C    ++GR      ++  I   C+ P   
Sbjct: 315 FEEAMDFLSRMRSSSCIPNVVTYRILL-CGCLRKRQLGRCKRILSMM--ITEGCY-PSRR 370

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
            F SLI   C       A  L  K+   GC+P    Y  LI G+C     + +L++ E  
Sbjct: 371 IFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGIC-GNEKLPSLDVLELA 429

Query: 149 ANGNGE-FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
               GE        + +  S +   LC  G  +KA  +  +M  +   PD  TY+ +I  
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C A+  + A  LF EM    V P+V T+ ++++  CK G + +A +  + M++ G  P+
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y  L+  +    +++ A ELF  M S GC+ +V +Y  LI+G+CK+ +IE A  +Y+
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 328 EMLSKGIRPTVVTY 341
            M      P V  Y
Sbjct: 610 RMRGNADIPDVDMY 623



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 15/293 (5%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
           N+LI   C+ G  +     LGR+    + P  +T+ +L++      R+  A  +  ++  
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
            G   D +T    ++ LC+ G    AL L E+      EF    K D + Y+ +  GLC+
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIEKE-----EF----KLDTVIYTQMISGLCE 311

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
               ++A +   +M+  +  P+VVTY  L+ G          K +   M+ +G  P+   
Sbjct: 312 ASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRI 371

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           FN +++  C++G    A +LL+ M   G +P   VYN L+ G C   ++     L ++ +
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEK 431

Query: 296 SNGCMRDVF------SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + G M D        +   L    C   + E A S+  EM+SKG  P   TY+
Sbjct: 432 AYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYS 484



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 29/260 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K+K  D  L +  R+      P++  Y  +I+  CK+G+    + +
Sbjct: 704 PNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRL 763

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      P+ VT+T++I G     ++ +   L  ++ A GC P+  TY  LIN  C 
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 135 TGHTIVALNLFEEMANG----------------NGEFGV-----------VCKPDAITYS 167
            G    A  L +EM                   N EF +           V  P    Y 
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYR 883

Query: 168 TITDGLCKEGFVDKAKELFLKMKD--ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
            + D  CK G ++ A EL   M         D   Y+SLI     A+  ++A  L+ +M+
Sbjct: 884 ILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMI 943

Query: 226 DQGVQPNVVTFNVIMNELCK 245
            +G  P +  F  ++  L +
Sbjct: 944 KRGGIPELSIFFYLVKGLIR 963



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 6/206 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+      P V ++  +     K    D  L L +++ + G  P+  TY +LIN  C  G
Sbjct: 766 MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAG 825

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     +L  + ++ +      +  +I+G   E  I  +  L  ++      P +  Y 
Sbjct: 826 LLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYR 883

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI+  C+ G   +AL L + M++           D   YS++ + L     VDKA EL+
Sbjct: 884 ILIDSFCKAGRLELALELHKXMSSCTS----YSAADKDLYSSLIESLSLASKVDKAFELY 939

Query: 187 LKMKDENINPDVVTYTSLIRGFCYAN 212
             M      P++  +  L++G    N
Sbjct: 940 ADMIKRGGIPELSIFFYLVKGLIRIN 965


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 183/342 (53%), Gaps = 9/342 (2%)

Query: 5   DYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + ++ MH     P   + N +   + +    +   +LF  + + G+ P+  +Y +++  +
Sbjct: 153 EMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGY 212

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+G V      LG ++   F  D  T + +++  C +  +  A   F +    G +P++
Sbjct: 213 CKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNL 272

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             +T +I GLC+ G    A  + EEM  G G      KP+  T++ + DGLCK+G+ +KA
Sbjct: 273 INFTCMIEGLCKRGSVKQAFEMLEEMV-GRG-----WKPNVYTHTALIDGLCKKGWTEKA 326

Query: 183 KELFLKM-KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
             LFLK+ + EN  P+V+TYT++I G+C     N A+ L   M +QG+ PN  T+  +++
Sbjct: 327 FRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLID 386

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK G  + A  L+ +M + G  P+   YN ++DG C  GRV  A ++  S   NG   
Sbjct: 387 GHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDA 446

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D  +Y ILI+ +CK  EI+ AL L+++M+  GI+P + +Y T
Sbjct: 447 DKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTT 488



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 169/327 (51%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  +   L K         + + +   G  P++YT+  LI+  CK G     F +
Sbjct: 270 PNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRL 329

Query: 75  LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
             +++RS    P+ +T+T++I G C + ++  A  L ++++  G  P+  TYTTLI+G C
Sbjct: 330 FLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHC 389

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+   A     E+ N   E G    P+  TY+ I DGLCK+G V +A ++        
Sbjct: 390 KAGNFERAY----ELMNVMNEEGF--SPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNG 443

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           ++ D VTYT LI   C   +  +A  LF +M+  G+QP++ ++  ++   C+  +M E+ 
Sbjct: 444 LDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESE 503

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
              E  ++ G+ P    Y +++ G+C  G +  A + F  M  +GC  D  +YG LI+G 
Sbjct: 504 MFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGL 563

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
           CK  +++ A  LY  M+ KG+ P  VT
Sbjct: 564 CKQSKLDEARCLYDAMIEKGLTPCEVT 590



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 157/297 (52%), Gaps = 5/297 (1%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G   D  T ++++  FC+ G V+       R       P+ + FT +I+GLC    + +A
Sbjct: 232 GFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQA 291

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +  ++   G KP+V+T+T LI+GLC+ G T  A  LF ++           KP+ +TY
Sbjct: 292 FEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENH-----KPNVLTY 346

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + +  G C++  +++A+ L  +MK++ + P+  TYT+LI G C A ++  A  L   M +
Sbjct: 347 TAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNE 406

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G  PNV T+N I++ LCK G++ EA ++L+   + G+  D   Y  L+   C    + +
Sbjct: 407 EGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQ 466

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A  LF  M  +G   D+ SY  LI  +C+ K ++ +   + E +  G+ PT  TY +
Sbjct: 467 ALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTS 523



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 150/332 (45%), Gaps = 9/332 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ++R     P V ++  +     +++  +    L  R+   GL P+  TY  LI+
Sbjct: 327 FRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLID 386

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G     + ++  +    F+P+  T+ +++ GLC + R+ EA  +       G   
Sbjct: 387 GHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDA 446

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT LI+  C+      AL LF +M       G+  +PD  +Y+T+    C+E  + 
Sbjct: 447 DKVTYTILISEHCKQAEIKQALVLFNKMVKS----GI--QPDIHSYTTLIAVFCREKRMK 500

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +++  F +     + P   TYTS+I G+C   +   A   F  M D G   + +T+  ++
Sbjct: 501 ESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALI 560

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK  K+DEA  L + MI+ G+ P      TL   +C       A  +   +E    +
Sbjct: 561 SGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWV 620

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           R V     L+   C  +++  A   + ++L K
Sbjct: 621 RTV---NTLVRKLCSERKVGMAALFFHKLLDK 649



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 119/253 (47%), Gaps = 9/253 (3%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANG 151
           ++K      R+ EA  +  ++   G  P   T   ++  +   G    A NLF+EM A G
Sbjct: 138 MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARG 197

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                   +P+ ++Y  +  G CK G V ++      M +     D  T + ++R FC  
Sbjct: 198 -------VQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEK 250

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                A   F    + G++PN++ F  ++  LCK G + +A  +LE M+  G +P+   +
Sbjct: 251 GFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTH 310

Query: 272 NTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
             L+DG C  G   +A  LF+ +  S     +V +Y  +I+GYC+++++  A  L S M 
Sbjct: 311 TALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMK 370

Query: 331 SKGIRPTVVTYNT 343
            +G+ P   TY T
Sbjct: 371 EQGLAPNTNTYTT 383


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 173/328 (52%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L +  H    L +   +   G   D+YTYN LI+  CK+G +     +
Sbjct: 300 PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEI 359

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+ VT+ +LI  LC E+ +  A  L   L + G  PDV T+ +LI GLC 
Sbjct: 360 LHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCL 419

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T +  +A+ LFEEM          C PD  TYS + + LC E  + +A  L  +M+    
Sbjct: 420 TSNREIAMELFEEMKEKG------CDPDEFTYSILIESLCSERRLKEALMLLKEMELSGC 473

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +VV Y +LI G C  N   +A+ +F +M   GV  + VT+N ++N LCK+ +++EA++
Sbjct: 474 ARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQ 533

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ MI  G++PD   Y T++  FC  G + RA ++  +M  NGC  D+ +YG LI G C
Sbjct: 534 LMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLC 593

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ A  L   +  KG+  T   YN
Sbjct: 594 KAGRVDVASKLLRSVQMKGMVLTPQAYN 621



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 178/365 (48%), Gaps = 43/365 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTY------------------ 55
           PP V +FNIL   L K       + + + + + GL PD  T+                  
Sbjct: 196 PPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALR 255

Query: 56  -----------------NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
                            N+L+N  CK GR+      +       F PD VTF +L+ GLC
Sbjct: 256 IKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLC 313

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
               I +   +   +   G + DV+TY +LI+GLC+ G    A+ +   M + +      
Sbjct: 314 RTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRD------ 367

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C+P+ +TY+T+   LCKE  V+ A EL   +  + + PDV T+ SLI+G C  ++   A 
Sbjct: 368 CEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAM 427

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF EM ++G  P+  T+++++  LC   ++ EA  LL+ M   G   +  VYNTL+DG 
Sbjct: 428 ELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGL 487

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   RV  A+++F  ME  G  R   +Y  LING CK+K +E A  L  +M+ +G++P  
Sbjct: 488 CKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDK 547

Query: 339 VTYNT 343
            TY T
Sbjct: 548 FTYTT 552



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 164/327 (50%), Gaps = 8/327 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N L   L K    D  + +   + S    P+  TYN LI   CK   V      L 
Sbjct: 337 VYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAA-TELA 395

Query: 77  RILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
           R+L S    PD  TF SLI+GLC  S    A  LF +++  GC PD FTY+ LI  LC  
Sbjct: 396 RVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSE 455

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                AL L +EM          C  + + Y+T+ DGLCK   V  A+++F +M+   ++
Sbjct: 456 RRLKEALMLLKEMELSG------CARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVS 509

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
              VTY +LI G C +    EA  L  +M+ +G++P+  T+  ++   C+ G +  A+ +
Sbjct: 510 RSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADI 569

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           ++ M   G  PD   Y TL+ G C  GRV+ A +L  S++  G +    +Y  +I   CK
Sbjct: 570 VQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCK 629

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
            K  + A+ L+ EM+ KG  P V+TY 
Sbjct: 630 RKRTKEAMRLFREMMEKGDPPDVITYK 656



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 162/328 (49%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L G L K  H +    L + L S G+ PD+ T+N LI   C          +
Sbjct: 370 PNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMEL 429

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD  T++ LI+ LC+E R+ EA  L  ++   GC  +V  Y TLI+GLC+
Sbjct: 430 FEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCK 489

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F++M       GV     ++TY+T+ +GLCK   V++A +L  +M  E +
Sbjct: 490 NNRVGDAEDIFDQMEM----LGV--SRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGL 543

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TYT++++ FC   D   A  +   M   G +P++VT+  ++  LCK G++D AS+
Sbjct: 544 KPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASK 603

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  +   G+      YN ++   C   R   A  LF  M   G   DV +Y I+  G C
Sbjct: 604 LLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLC 663

Query: 315 K-NKEIEGALSLYSEMLSKGIRPTVVTY 341
                I+ A+    EML KGI P   ++
Sbjct: 664 NGGGPIQEAVDFTVEMLEKGILPEFPSF 691



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 158/325 (48%), Gaps = 8/325 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S N+L   L K    +  L         G  PD  T+N L+N  C+ G +  G  ++  +
Sbjct: 271 SVNVLVNGLCKEGRIEEALRFI--YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFM 328

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L   F  D  T+ SLI GLC    I EA  +   + +  C+P+  TY TLI  LC+  H 
Sbjct: 329 LEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHV 388

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  L   + +     GV+  PD  T++++  GLC     + A ELF +MK++  +PD 
Sbjct: 389 EAATELARVLTSK----GVL--PDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDE 442

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TY+ LI   C      EA  L  EM   G   NVV +N +++ LCKN ++ +A  + + 
Sbjct: 443 FTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQ 502

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M  +GV   +  YNTL++G C + RV  A +L   M   G   D F+Y  ++  +C+  +
Sbjct: 503 MEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGD 562

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           I+ A  +   M   G  P +VTY T
Sbjct: 563 IKRAADIVQNMTLNGCEPDIVTYGT 587



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 150/320 (46%), Gaps = 7/320 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P VC+FN L   L    + +  + LF+ +   G  PD +TY+ILI   C   R+    ++
Sbjct: 405 PDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALML 464

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  S    + V + +LI GLC  +R+ +A  +F ++   G      TY TLINGLC+
Sbjct: 465 LKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCK 524

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A  L ++M           KPD  TY+T+    C++G + +A ++   M     
Sbjct: 525 SKRVEEAAQLMDQMIMEG------LKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGC 578

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY +LI G C A   + A  L   +  +G+      +N ++  LCK  +  EA R
Sbjct: 579 EPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMR 638

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTG-RVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           L   M++ G  PD   Y  +  G C  G  +  A +  V M   G + +  S+G L  G 
Sbjct: 639 LFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGL 698

Query: 314 CKNKEIEGALSLYSEMLSKG 333
           C     +  + L + ++ KG
Sbjct: 699 CSLSMEDTLIQLINMVMEKG 718



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 124/297 (41%), Gaps = 43/297 (14%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           ++     F  L++ L           L  ++ +     D  T+   +     + H    +
Sbjct: 88  YSAHPSVFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTFLIFLETYATSHHLHAEI 147

Query: 143 N-LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
           N LF  M     +F V  KPD   Y+     L K   +   + L  KM  + + PDV T+
Sbjct: 148 NPLFLLMER---DFAV--KPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTF 202

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF------------------------- 236
             LIR  C A+    A  +  +M + G++P+  TF                         
Sbjct: 203 NILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVE 262

Query: 237 ----------NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
                     NV++N LCK G+++EA R   +  + G  PD   +N L++G C TG + +
Sbjct: 263 SGCELTSVSVNVLVNGLCKEGRIEEALRF--IYEEEGFCPDQVTFNALVNGLCRTGHIKQ 320

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             E+   M   G   DV++Y  LI+G CK  EI+ A+ +   M+S+   P  VTYNT
Sbjct: 321 GLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNT 377



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 104/264 (39%), Gaps = 63/264 (23%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N L   L KN        +F ++  +G+     TYN LIN  CK  RV     ++ 
Sbjct: 477 VVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMD 536

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           +++     PD  T+T+++K  C +  I  AA +   +   GC+PD+ TY TLI GLC+ G
Sbjct: 537 QMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAG 596

Query: 137 HTIVALNLFEEMANG---------NGEFGVVCK--------------------PDAITYS 167
              VA  L   +            N     +CK                    PD ITY 
Sbjct: 597 RVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYK 656

Query: 168 TITDGLCKEGF-VDKAKELFLKMKDENINPDVVTY------------------------- 201
            +  GLC  G  + +A +  ++M ++ I P+  ++                         
Sbjct: 657 IVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVME 716

Query: 202 --------TSLIRGFCYANDWNEA 217
                   TS+IRGF     +N+A
Sbjct: 717 KGRFSQSETSIIRGFLKIQKFNDA 740


>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 805

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/400 (32%), Positives = 193/400 (48%), Gaps = 77/400 (19%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNK-HYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           F+ ML+M  +P  +  FN +   L K K HY TVLSL  ++ S G+ PDL+T +ILINC+
Sbjct: 193 FNRMLQMRHTPS-IVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCY 251

Query: 63  C-KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
             KMG                + P+ +T T+LIKGLC   ++ EA      + A G   +
Sbjct: 252 YFKMG----------------YEPNTITLTTLIKGLCLNGKVNEALLFHDHVLALGFHLN 295

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV---------CK------------ 160
             TY  LINGLC+ G T  AL +  ++        VV         CK            
Sbjct: 296 HVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTVIDGLCKDKLVIDAYGLYS 355

Query: 161 -----------------------------PDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
                                        P+  T++ + D LCK+G + +AK + +KM D
Sbjct: 356 EMIVKRIPPTVVTFKAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVD 415

Query: 192 ENIN--------PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           E +N        P+ V+Y +LI GFC +   + A  L  +M D+G  PNV+T+N +++ L
Sbjct: 416 EALNLFTEMHCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHAL 475

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CKN  +D+A  L+      G++PD   YNTL+DG C  GR+  A+ +F  +   G     
Sbjct: 476 CKNHHVDKAIALVNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLPT 535

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++Y I+ING C    ++ A +L S+M   G  P VVTY T
Sbjct: 536 WTYNIMINGLCLEGLLDEAETLLSKMEDNGCIPDVVTYQT 575



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 173/337 (51%), Gaps = 48/337 (14%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           +D VL+L   LN +       TY ILIN  CKMG+      VL +I       + V +++
Sbjct: 284 HDHVLALGFHLNHV-------TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYST 336

Query: 93  LIKGLCAESRIMEAAALFTKL------------RAFG---------CKPDVFTYTTLING 131
           +I GLC +  +++A  L++++            +AF            P+V+T+  L++ 
Sbjct: 337 VIDGLCKDKLVIDAYGLYSEMIVKRIPPTVVTFKAFSLFHEMVLKNINPNVYTFNILVDA 396

Query: 132 LCRTG------HTIV-----ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           LC+ G      + I+     ALNLF EM          CKP+ ++Y+T+ DG CK G + 
Sbjct: 397 LCKDGKIKEAKNVIIKMVDEALNLFTEMH---------CKPNTVSYNTLIDGFCKSGRLS 447

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A +L  +M+D    P+V+TY SL+   C  +  ++A  L     DQG+QP++ T+N ++
Sbjct: 448 HAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPDMHTYNTLV 507

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK G++ +A  + + ++  G       YN +++G CL G ++ A+ L   ME NGC+
Sbjct: 508 DGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAETLLSKMEDNGCI 567

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            DV +Y  +I+   +  E + A  L  E++ +  R +
Sbjct: 568 PDVVTYQTIIHALFEKDENDKAEKLVRELIVRVFRKS 604


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 177/340 (52%), Gaps = 12/340 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ + G L      D    LF+ + S  + PD++TY ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    P+ VT+T+LI       ++  A  LF  + + GC P+V TYT LI+G C+
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 135 TGHTIVALNLFEEMANGNGEF-----------GVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +G    A  ++  M  GN +            G +  P+  TY  + DGLCK   V +A+
Sbjct: 598 SGQIEKACQIYARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEAR 656

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L   M  E   P+ + Y +LI GFC     +EA+ +F +M ++G  PNV T++ +++ L
Sbjct: 657 DLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRL 716

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K+ ++D A ++L  M++    P+  +Y  ++DG C  G+ + A  L   ME  GC  +V
Sbjct: 717 FKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNV 776

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  +I+G+ K  +++  L L  +M +KG  P  VTY  
Sbjct: 777 VTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 172/368 (46%), Gaps = 40/368 (10%)

Query: 5   DYMLRMHPSP--PPVCSFNILF-GCLAKNKHYDTVLSLFKRLNSI----GLFPDLYTYNI 57
           D++ RM  S   P V ++ IL  GCL K +     L   KR+ S+    G +P    +N 
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRKRQ-----LGRCKRILSMMITEGCYPSRRIFNS 374

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           LI+ +C+ G  S  + +L ++      P  V +  LI G+C   ++     L    +A+G
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434

Query: 118 CKPDVFTYTTLING------LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
              D       +N       LC  G    A ++  EM +     G +  PD  TYS +  
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK----GFI--PDTSTYSKVIG 488

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
            LC    VD A  LF +MK  ++ PDV TYT LI  FC      +A+  F EM+  G  P
Sbjct: 489 LLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAP 548

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           NVVT+  +++   K  KM  A+ L E+M+  G  P+   Y  L+DG C +G++ +A +++
Sbjct: 549 NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIY 608

Query: 292 VSMESN--------------GCMRD--VFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
             M  N              G +RD  +F+YG L++G CK  +++ A  L   M  +G  
Sbjct: 609 ARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCE 668

Query: 336 PTVVTYNT 343
           P  + Y+ 
Sbjct: 669 PNHIVYDA 676



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 30/347 (8%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL---- 75
           FN L     ++  Y     L K++   G  P    YNILI   C   ++ P   VL    
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKL-PSLDVLELAE 430

Query: 76  ---GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
              G +L +    + V  ++L + LC   +  +A ++  ++ + G  PD  TY+ +I  L
Sbjct: 431 KAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLL 490

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C       A  LFEEM + +    VV  PD  TY+ + D  CK G + +A++ F +M  +
Sbjct: 491 CNASKVDNAFLLFEEMKSNH----VV--PDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              P+VVTYT+LI  +  A   + A  LF  M+ +G  PNVVT+  +++  CK+G++++A
Sbjct: 545 GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKA 604

Query: 253 SRLLELMIQIGVRPDASVY----------------NTLMDGFCLTGRVNRAKELFVSMES 296
            ++   M      PD  +Y                  L+DG C   +V  A++L   M  
Sbjct: 605 CQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSV 664

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            GC  +   Y  LI+G+CK  +++ A  ++++M  +G  P V TY++
Sbjct: 665 EGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 151/288 (52%), Gaps = 20/288 (6%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P+++TY  L++  CK  +V     +L  +      P+ + + +LI G C   ++ EA  +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           FTK+   G  P+V+TY++LI+ L +     +AL +   M   +      C P+ I Y+ +
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS------CAPNVIIYTEM 747

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DGLCK G  D+A  L   M+++  +P+VVTYT++I GF  A   ++   L  +M  +G 
Sbjct: 748 IDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGC 807

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PN VT+ V++N  C  G +D+A +LL+ M Q       + Y  +++GF      NR  E
Sbjct: 808 APNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF------NR--E 859

Query: 290 LFVSM------ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             +S+        N  +  + +Y ILI+ +CK   +E AL L+ EM S
Sbjct: 860 FIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSS 907



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 164/370 (44%), Gaps = 50/370 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     +    DT   + + ++  G   D YT    ++  CK GR       
Sbjct: 230 PSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA--- 286

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY--------- 125
           L  I +  F  D V +T +I GLC  S   EA    +++R+  C P+V TY         
Sbjct: 287 LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLR 346

Query: 126 --------------------------TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                                      +LI+  CR+G    A  L ++M    G+ G  C
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM----GDCG--C 400

Query: 160 KPDAITYSTITDGLCKE------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           +P  + Y+ +  G+C          ++ A++ + +M D ++  + V  ++L R  C A  
Sbjct: 401 QPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGK 460

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +  EMM +G  P+  T++ ++  LC   K+D A  L E M    V PD   Y  
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+D FC  G + +A++ F  M  +GC  +V +Y  LI+ Y K +++  A  L+  MLS+G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 334 IRPTVVTYNT 343
             P VVTY  
Sbjct: 581 CIPNVVTYTA 590



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 10/314 (3%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFC----KMGRVSPGFVVLGRILRSCFTPDAV 88
           ++  +    R+ S    P++ TY IL+ C C    ++GR      ++  I   C+ P   
Sbjct: 315 FEEAMDFLSRMRSSSCIPNVVTYRILL-CGCLRKRQLGRCKRILSMM--ITEGCY-PSRR 370

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
            F SLI   C       A  L  K+   GC+P    Y  LI G+C     + +L++ E  
Sbjct: 371 IFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGIC-GNEKLPSLDVLELA 429

Query: 149 ANGNGE-FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
               GE        + +  S +   LC  G  +KA  +  +M  +   PD  TY+ +I  
Sbjct: 430 EKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGL 489

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C A+  + A  LF EM    V P+V T+ ++++  CK G + +A +  + M++ G  P+
Sbjct: 490 LCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y  L+  +    +++ A ELF  M S GC+ +V +Y  LI+G+CK+ +IE A  +Y+
Sbjct: 550 VVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYA 609

Query: 328 EMLSKGIRPTVVTY 341
            M      P V  Y
Sbjct: 610 RMRGNADIPDVDMY 623



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 15/293 (5%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
           N+LI   C+ G  +     LGR+    + P  +T+ +L++      R+  A  +  ++  
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
            G   D +T    ++ LC+ G    AL L E+      EF    K D + Y+ +  GLC+
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIEK-----EEF----KLDTVIYTQMISGLCE 311

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
               ++A +   +M+  +  P+VVTY  L+ G          K +   M+ +G  P+   
Sbjct: 312 ASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRI 371

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           FN +++  C++G    A +LL+ M   G +P   VYN L+ G C   ++     L ++ +
Sbjct: 372 FNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEK 431

Query: 296 SNGCMRDVF------SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + G M D        +   L    C   + E A S+  EM+SKG  P   TY+
Sbjct: 432 AYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYS 484



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 118/277 (42%), Gaps = 29/277 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K+K  D  L +  R+      P++  Y  +I+  CK+G+    + +
Sbjct: 704 PNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRL 763

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      P+ VT+T++I G     ++ +   L  ++ A GC P+  TY  LIN  C 
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 135 TGHTIVALNLFEEMANG----------------NGEFGV-----------VCKPDAITYS 167
            G    A  L +EM                   N EF +           V  P    Y 
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYR 883

Query: 168 TITDGLCKEGFVDKAKELFLKMKD--ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
            + D  CK G ++ A EL  +M         D   Y+SLI     A+  ++A  L+ +M+
Sbjct: 884 ILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMI 943

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
            +G  P +  F  ++  L +  + +EA +L + + Q+
Sbjct: 944 KRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQM 980


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 189/395 (47%), Gaps = 71/395 (17%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L +        +LF  +   G+ PD+ TY  +I+  CK   +    +V
Sbjct: 225 PNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELV 284

Query: 75  LGRILRSCFTPDAVTFTSLIKG-----------------------------------LCA 99
           L +++ + F P+ VT+  +I G                                   LC 
Sbjct: 285 LRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCK 344

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG------ 153
             +  EAA  F  + A G KP++ TY+ L++G    G  +  LNLF  M  GNG      
Sbjct: 345 HGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSM-EGNGIVADQR 403

Query: 154 --------------------------EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
                                     E GV+  PDA TY  +     + G +  A + F 
Sbjct: 404 VFNIVIDAYGKRGMMDETMLIFTQMQEQGVI--PDACTYGIVIAAFSRMGRLADAMDKFN 461

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-QPNVVTFNVIMNELCKN 246
           +M    + P+ + Y SLI+GFC   +  +AK L  EMM +G+ +PN+V FN I+N LCK 
Sbjct: 462 QMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKE 521

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G++ EA  + + +I IG RPD   +N+L+DG+ L G++ +A  +  +M S G   DV SY
Sbjct: 522 GRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSY 581

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             LI+GYC+N  I+  L L+ EMLSKG++PT +TY
Sbjct: 582 NTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITY 616



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 179/347 (51%), Gaps = 13/347 (3%)

Query: 2   CIFDYMLRMHPSP----PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNI 57
            +F+ + R    P    P VC++NIL  C  + +      +LF R    GL  D+   +I
Sbjct: 100 ALFNRICREEARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASI 159

Query: 58  LINCFCKMGRVSPGF-VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--R 114
           L+ C     R      ++L R+      PD +++ +++K LC +SR   A  L   +  +
Sbjct: 160 LLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKK 219

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
           + GC P+V TY T+I+GL R G    A NLF EM     + GVV  PD +TY++I D LC
Sbjct: 220 SGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMM----QQGVV--PDVVTYTSIIDALC 273

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K   +DKA+ +  +M      P+ VTY  +I G+  +  W E   +F EM  QG+ PN+V
Sbjct: 274 KARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIV 333

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T N  M+ LCK+GK  EA+   + M   G +P+   Y+ L+ G+   G       LF SM
Sbjct: 334 TCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSM 393

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           E NG + D   + I+I+ Y K   ++  + ++++M  +G+ P   TY
Sbjct: 394 EGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTY 440



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 42/354 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FNI+     K    D  + +F ++   G+ PD  TY I+I  F +MGR++       +++
Sbjct: 405 FNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMI 464

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPDVFTYTTLINGLCRTGHT 138
                P+ + + SLI+G C    +++A  L +++ + G  +P++  + ++IN LC+ G  
Sbjct: 465 AMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRV 524

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
           + A ++F+ + +  GE     +PD IT++++ DG    G ++KA  +   M    I PDV
Sbjct: 525 VEAHDIFDFVIH-IGE-----RPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDV 578

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V+Y +LI G+C     ++   LF EM+ +GV+P  +T+ +I++ L  +G+   A ++   
Sbjct: 579 VSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHE 638

Query: 259 MIQIGVRPDAS-----------------------------------VYNTLMDGFCLTGR 283
           MI+ G   D S                                   + NT++D      +
Sbjct: 639 MIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRK 698

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
              AKELF S+ + G + +  +YG++I    K   +E A +++S M   G  P+
Sbjct: 699 REEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPS 752



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 169/329 (51%), Gaps = 5/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++++L    A    +  +L+LF  +   G+  D   +NI+I+ + K G +    ++
Sbjct: 365 PNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLI 424

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++      PDA T+  +I       R+ +A   F ++ A G KP+   Y +LI G C 
Sbjct: 425 FTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCM 484

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+ + A  L  EM +       + +P+ + +++I + LCKEG V +A ++F  +     
Sbjct: 485 HGNLVKAKELVSEMMSRG-----IPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGE 539

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+T+ SLI G+       +A  +   M+  G++P+VV++N +++  C+NG++D+   
Sbjct: 540 RPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLI 599

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+  GV+P    Y  ++ G    GR   AK++   M  +G   D+ + GI++ G C
Sbjct: 600 LFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLC 659

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +N   + A++++ ++ +  ++  +   NT
Sbjct: 660 RNNCDDEAIAMFKKLGAMNVKFNIAIINT 688



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 162/354 (45%), Gaps = 55/354 (15%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDT-------VLSLFKRL-----NSIGLFP 50
           +FD +LR    P P  S N  F  LA+              ++LF R+           P
Sbjct: 59  LFDELLR-QTIPVPERSLNGFFTALARAPSSAACRDGPSLAVALFNRICREEARPRVALP 117

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
            + TYNIL++C C+  R + GF                                   ALF
Sbjct: 118 TVCTYNILMDCCCRTRRPTVGF-----------------------------------ALF 142

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            +    G K DV   + L+  L     +   +NL   + +   E GV  +PD I+Y+T+ 
Sbjct: 143 GRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNL---LLHRMPELGV--EPDTISYNTVV 197

Query: 171 DGLCKEGFVDKAKELFLKM--KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
             LC++    +A +L   M  K    +P+VVTY ++I G     + ++A  LF EMM QG
Sbjct: 198 KTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQG 257

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           V P+VVT+  I++ LCK   MD+A  +L  MI  G +P+   YN ++ G+ ++G+     
Sbjct: 258 VVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETA 317

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +F  M S G M ++ +    ++  CK+ + + A   +  M +KG +P +VTY+
Sbjct: 318 GMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYS 371



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 127/273 (46%), Gaps = 6/273 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  FN +   L K         +F  +  IG  PD+ T+N LI+ +  +G++   F V
Sbjct: 506 PNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGV 565

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   PD V++ +LI G C   RI +   LF ++ + G KP   TY  +++GL  
Sbjct: 566 LDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFN 625

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T+ A  +  EM     E G     D  T   I  GLC+    D+A  +F K+   N+
Sbjct: 626 DGRTVGAKKMCHEMI----ESGTTM--DISTCGIILGGLCRNNCDDEAIAMFKKLGAMNV 679

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++    ++I          EAK LF  +   G+ PN  T+ V++  L K G ++EA  
Sbjct: 680 KFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADN 739

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           +  LM + G  P + + N ++      G + +A
Sbjct: 740 MFSLMEKSGCAPSSRLLNYIIRVLLEKGEIVKA 772



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           I+ G L +N   D  +++FK+L ++ +  ++   N +I+   K+ +      +   I  +
Sbjct: 653 IILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISAT 712

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
              P+A T+  +IK L  E  + EA  +F+ +   GC P       +I  L   G  + A
Sbjct: 713 GLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVLLEKGEIVKA 772

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTIT 170
                    GN  F V  K  ++  ST++
Sbjct: 773 ---------GNYMFKVDGKRISLEASTVS 792


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 177/346 (51%), Gaps = 12/346 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             +FD ML    SP  V +++IL     K   Y   + L   + S G  PD+ TYN+LIN
Sbjct: 180 LAVFDDMLHRGCSPS-VVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLIN 238

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  G V     VL  +      PDAVT+T ++K LC+  R  EA  L TK+ +  C P
Sbjct: 239 AMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAP 298

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  T+  +I  LC+ G    A  +  +M+    E G  C PD ITYS+I DGLCKE  VD
Sbjct: 299 DEVTFNAVITSLCQKGFVGRATKVLAQMS----EHG--CTPDIITYSSIMDGLCKERRVD 352

Query: 181 KA----KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           +A    KEL  +M  +N  PD VT+ ++I   C    ++ A  +  EM + G  P++ T+
Sbjct: 353 EAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTY 412

Query: 237 NVIMNE-LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           N I++  LCK+ K +EA  LL LM+  G+ PD + Y +L  G      + RA  +F  ++
Sbjct: 413 NCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQ 472

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + G   D   Y  ++ G CK    + A+  ++ M+S G  P   TY
Sbjct: 473 AMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTY 518



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 166/308 (53%), Gaps = 11/308 (3%)

Query: 41  KRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100
           + ++S+   PD +TYN LI   C  G V     V   +L    +P  VT++ L+   C E
Sbjct: 149 RMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKE 208

Query: 101 SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160
           S   +A  L  ++R+ GC+PD+ TY  LIN +C  G    AL +   + +    +G  CK
Sbjct: 209 SGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPS----YG--CK 262

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           PDA+TY+ +   LC     ++A +L  KM   +  PD VT+ ++I   C       A  +
Sbjct: 263 PDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKV 322

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL-ELMIQIGVR---PDASVYNTLMD 276
             +M + G  P+++T++ IM+ LCK  ++DEA +LL EL+ ++  +   PD   +NT++ 
Sbjct: 323 LAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIIT 382

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY-CKNKEIEGALSLYSEMLSKGIR 335
             C  G  +RA ++   M  +GC+ D+ +Y  +++G+ CK+ + E AL L + M+S G+ 
Sbjct: 383 SLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLC 442

Query: 336 PTVVTYNT 343
           P   TY +
Sbjct: 443 PDTTTYKS 450



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 171/342 (50%), Gaps = 11/342 (3%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+   P  P   ++N L   L         L++F  +   G  P + TY+IL++  CK  
Sbjct: 150 MIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKES 209

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
                 V+L  +      PD VT+  LI  +C++  + EA  +   L ++GCKPD  TYT
Sbjct: 210 GYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYT 269

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            ++  LC +     A  L  +M      F   C PD +T++ +   LC++GFV +A ++ 
Sbjct: 270 PVLKSLCSSERWEEADKLLTKM------FSNDCAPDEVTFNAVITSLCQKGFVGRATKVL 323

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEA----KCLFIEMMDQGVQPNVVTFNVIMNE 242
            +M +    PD++TY+S++ G C     +EA    K L  EM+ +   P+ VTFN I+  
Sbjct: 324 AQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITS 383

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF-CLTGRVNRAKELFVSMESNGCMR 301
           LC+ G  D A ++++ M + G  PD + YN ++DGF C + +   A +L   M SNG   
Sbjct: 384 LCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCP 443

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D  +Y  L  G  +  E+E A+ ++  + + G+ P  + YN 
Sbjct: 444 DTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNA 485



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 161/356 (45%), Gaps = 31/356 (8%)

Query: 5   DYMLRMH--------PSPPPVCS---FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY 53
           DY  R H        P  PP  S    N     L +    D  L L   ++  G  P + 
Sbjct: 38  DYHNRDHGTAKWTRTPPKPPARSGGGANRRLRGLVQRGELDGALRLVHSISGSGKDPAVI 97

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA--VTFTSLIKGLCAESRIMEAAALFT 111
             NILI   C  GRV+    V+         P A  +T+ +++ G C    I +AA    
Sbjct: 98  PCNILIKKLCADGRVADAERVV-----EALGPSATIITYNTMVNGYCRAGNI-DAARRMI 151

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
               F   PD FTY  LI  LC  G  + AL +F++M +        C P  +TYS + D
Sbjct: 152 DSVPFA--PDTFTYNPLIRALCVRGCVLDALAVFDDMLHRG------CSPSVVTYSILLD 203

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
             CKE    +A  L  +M+ +   PD+VTY  LI   C   D  EA  +   +   G +P
Sbjct: 204 ATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKP 263

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           + VT+  ++  LC + + +EA +LL  M      PD   +N ++   C  G V RA ++ 
Sbjct: 264 DAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVL 323

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGAL----SLYSEMLSKGIRPTVVTYNT 343
             M  +GC  D+ +Y  +++G CK + ++ A+     L +EM+SK   P  VT+NT
Sbjct: 324 AQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNT 379


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 169/305 (55%), Gaps = 6/305 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           ++  + +   GL PD   Y ++I  FC+ G +S    V   ++     PD VT+ +L+ G
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
           LC E R+++A  L  ++R  G  PD+ T+TTLI+G C  G    AL LF+ M N      
Sbjct: 61  LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR---- 116

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
              +PD +TY+T+ DG+C++G +DKA +L+  M    I P+ VTY+ LI   C      +
Sbjct: 117 --LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVED 174

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A     EM+++G+ PN++T+N I+   C++G + +  + L+ M+   V PD   YNTL+ 
Sbjct: 175 AFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIH 234

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G+    +++ A +L   ME      DV +Y +LING+  +  ++ A  ++ +M +KGI P
Sbjct: 235 GYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEP 294

Query: 337 TVVTY 341
              TY
Sbjct: 295 DRYTY 299



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 151/263 (57%), Gaps = 8/263 (3%)

Query: 82  CF--TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           CF   PD V +T +I G C    + +A  +  ++   GC PDV TY TL+NGLC+    +
Sbjct: 9   CFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLL 68

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L  EM     E GV   PD  T++T+  G C EG +DKA +LF  M ++ + PD+V
Sbjct: 69  DAEGLLNEMR----ERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIV 122

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY +LI G C   D ++A  L+ +M  + + PN VT++++++  C+ G++++A   L+ M
Sbjct: 123 TYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEM 182

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           I  G+ P+   YN+++ G+C +G V++ ++    M  N    D+ +Y  LI+GY K  ++
Sbjct: 183 INKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKM 242

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
             A  L + M  + ++P VVTYN
Sbjct: 243 HDAFKLLNMMEKEKVQPDVVTYN 265



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K +       L   +   G+ PDL T+  LI+ +C  G++     +
Sbjct: 49  PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 108

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     PD VT+ +LI G+C +  + +A  L+  + +    P+  TY+ LI+  C 
Sbjct: 109 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 168

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A    +EM N     G++  P+ +TY++I  G C+ G V K ++   KM    +
Sbjct: 169 KGQVEDAFGFLDEMINK----GIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 222

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD++TY +LI G+   +  ++A  L   M  + VQP+VVT+N+++N    +G + EA  
Sbjct: 223 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 282

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           + E M   G+ PD   Y ++++G    G    A +L   M   G
Sbjct: 283 IFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 326



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 114/193 (59%), Gaps = 10/193 (5%)

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN----PDVVTYTSLIRGFCY 210
           FG+V  PD + Y+ +  G C+ G +  A    L+++DE +     PDVVTY +L+ G C 
Sbjct: 10  FGLV--PDGVIYTMVIGGFCRAGLMSDA----LRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
                +A+ L  EM ++GV P++ TF  +++  C  GK+D+A +L + M+   +RPD   
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           YNTL+DG C  G +++A +L+  M S     +  +Y ILI+ +C+  ++E A     EM+
Sbjct: 124 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMI 183

Query: 331 SKGIRPTVVTYNT 343
           +KGI P ++TYN+
Sbjct: 184 NKGILPNIMTYNS 196



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 124/260 (47%), Gaps = 6/260 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    PP +C+F  L          D  L LF  + +  L PD+ TYN LI+  C+ G 
Sbjct: 77  MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 136

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +   +      P+ VT++ LI   C + ++ +A     ++   G  P++ TY +
Sbjct: 137 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 196

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I G CR+G+        ++M            PD ITY+T+  G  KE  +  A +L  
Sbjct: 197 IIKGYCRSGNVSKGQKFLQKMMVNK------VSPDLITYNTLIHGYIKEDKMHDAFKLLN 250

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M+ E + PDVVTY  LI GF    +  EA  +F +M  +G++P+  T+  ++N     G
Sbjct: 251 MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 310

Query: 248 KMDEASRLLELMIQIGVRPD 267
              EA +L + M+Q G  PD
Sbjct: 311 NSKEAFQLHDEMLQRGFAPD 330


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 177/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +         ++    +FK +    L PD YTYN  I+  CK  R+     V
Sbjct: 250 PNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGV 309

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L S   P+AVT+ +LI G C +  + +A A   ++   G    VFTY  LI+ L  
Sbjct: 310 LCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFL 369

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++ +EM     E GV  +PD +TY+   +G C+ G   KA  LF +M ++NI
Sbjct: 370 EKRIEEAEDMIKEMR----EKGV--EPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNI 423

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V TYTSLI  F   N  +EA+  F + + +G+ P+++ FN +++  C NG +D A +
Sbjct: 424 RPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQ 483

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M    V PD   +NTLM G+C   +V  AK+L   M+  G   D  SY  LI+GY 
Sbjct: 484 LLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYS 543

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K  +++ AL ++ EMLS G  PT++TYN
Sbjct: 544 KRGDMKDALEVFDEMLSLGFDPTLLTYN 571



 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 178/341 (52%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +++ M++M+     + +FNI+   L +   +         +   G+ P++ TYN +IN +
Sbjct: 204 VYEEMVKMNIKSS-IVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGY 262

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G+      +   +      PD  T+ S I  LC E RI EA+ +  KL   G  P+ 
Sbjct: 263 CLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNA 322

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LI+G C  G    A    +EM N     G+V      TY+ +   L  E  +++A
Sbjct: 323 VTYNALIDGCCNKGDLDKAFAYRDEMMNR----GIVA--SVFTYNLLIHALFLEKRIEEA 376

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +++  +M+++ + PDVVTY   I G+C   +  +A  LF EM+++ ++P V T+  +++ 
Sbjct: 377 EDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDV 436

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K  +M EA    +  I+ G+ PD  ++N L+DG C+ G ++RA +L   M++   + D
Sbjct: 437 FGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPD 496

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++  L+ GYC+ +++E A  L  EM  +GI+P  ++YNT
Sbjct: 497 EVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNT 537



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 169/346 (48%), Gaps = 17/346 (4%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL----NSIGLFPDLYTYNI 57
           CI   +L   PSP P  SF+IL   L    H  T   +F  L    N + +   L  +++
Sbjct: 100 CITLCILYRLPSPKP--SFHILQPIL----HTTTPTVIFNELSLARNRLNVKTTL-VFDL 152

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           L++ +C+  +       L  +  +   P   T  SL+  L   ++I  A  ++ ++    
Sbjct: 153 LLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKMN 212

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
            K  + T+  +IN LCR G    A +    M      +GV  KP+ +TY+T+ +G C  G
Sbjct: 213 IKSSIVTFNIMINILCREGKWKKAKDFIGHME----VYGV--KPNVVTYNTVINGYCLRG 266

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
             + A ++F  MKD+N+ PD  TY S I   C      EA  +  ++++ G+ PN VT+N
Sbjct: 267 KFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYN 326

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +++  C  G +D+A    + M+  G+      YN L+    L  R+  A+++   M   
Sbjct: 327 ALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREK 386

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   DV +Y I INGYC+    + ALSL+ EM+ K IRPTV TY +
Sbjct: 387 GVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTS 432



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 116/266 (43%), Gaps = 33/266 (12%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+L   L   K  +    + K +   G+ PD+ TYNI IN +C+ G       +  
Sbjct: 357 VFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFD 416

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P   T+TSLI      +R+ EA   F K    G  PD+  +  LI+G C  G
Sbjct: 417 EMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNG 476

Query: 137 HTIVALNLFEEMANGN-------------------------------GEFGVVCKPDAIT 165
           +   A  L +EM N                                  E G+  KPD I+
Sbjct: 477 NIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGI--KPDHIS 534

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+  G  K G +  A E+F +M     +P ++TY +LI+G+    + + A+ L  EM 
Sbjct: 535 YNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQ 594

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDE 251
            +G+ P+  T+  ++  +  N  + E
Sbjct: 595 SKGITPDDSTYLYVIEAMKTNDDLVE 620


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 164/307 (53%), Gaps = 10/307 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L     + K+ +   SL + + + G+  D+ TYN L++  CK GR+     +
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+  S   PD V ++S + GLC   +++ A  +  ++R     P+V TY T+++GLC+
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCK 269

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    AL + E+MA+ +G     C  + + YST+ DGLCK G   +A+ +   M     
Sbjct: 270 SGKIDTALEMMEQMASSDG-----CGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGC 324

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY+SL+ G C A    EA     EM  +G +PN VT+  +++ LC  G++ EA R
Sbjct: 325 RPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAER 384

Query: 255 LLELMIQIGVR-----PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           ++E M   G       P  S YN L+ G C  GR++ A + F  M S GC  D  SY  +
Sbjct: 385 MVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTI 444

Query: 310 INGYCKN 316
           + G  ++
Sbjct: 445 VEGLARS 451



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 180/366 (49%), Gaps = 44/366 (12%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM-------- 65
           PP   +FN L    +K         L + + + G+ P++ +YN L+   CK+        
Sbjct: 7   PPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEE 66

Query: 66  ---------GRVSPGFV--------------------VLGRILRSCFTPDAVTFTSLIKG 96
                    GR +P  V                    +L  ++     PDA+ +T ++  
Sbjct: 67  LVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMAS 126

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
           LC  +R+ EA  L  ++   GC P + T+ TLI+G CR  +  +A +L + MA      G
Sbjct: 127 LCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAAS----G 182

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
           V  K D +TY+T+ DGLCK G + +A++L  +MK     PDVV Y+S + G C +     
Sbjct: 183 V--KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLN 240

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI-GVRPDASVYNTLM 275
           A  +  +M D    PNVVT+N I++ LCK+GK+D A  ++E M    G   +   Y+T++
Sbjct: 241 AHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVV 300

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           DG C  GR   A+ +  +M   GC  DV +Y  L+NG CK  +IE A+    EM  +G +
Sbjct: 301 DGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCK 360

Query: 336 PTVVTY 341
           P  VTY
Sbjct: 361 PNAVTY 366



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 172/335 (51%), Gaps = 12/335 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +  +   L K+      L L + +   G  P L T+N LI+  C+   +     +
Sbjct: 115 PDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSL 174

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  S    D VT+ +L+ GLC   R+ EA  L  +++A GC PDV  Y++ + GLC+
Sbjct: 175 LQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCK 234

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDEN 193
           +G  + A  + E+M + + +      P+ +TY+TI DGLCK G +D A E+  +M   + 
Sbjct: 235 SGKVLNAHQVLEQMRDSDHD------PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDG 288

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              +VV Y++++ G C      EA+ +   M   G +P+VVT++ ++N LCK GK++EA 
Sbjct: 289 CGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAV 348

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-----ESNGCMRDVFSYGI 308
             +  M   G +P+A  Y +L+ G C  GR+  A+ +   M       + C   V +Y  
Sbjct: 349 EAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNA 408

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LI G CK   I+ AL  +  M S+G  P  V+Y+T
Sbjct: 409 LIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYST 443



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 176/352 (50%), Gaps = 22/352 (6%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D + R   S P + +++ L     K    +    L K + S GL PD   Y  ++   
Sbjct: 68  VRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASL 127

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  R+     +L  ++R+   P  +TF +LI G C E  +  A +L   + A G K DV
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADV 187

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            TY TL++GLC+ G    A  L E M A+G       C PD + YS+   GLCK G V  
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERMKASG-------CAPDVVAYSSFVYGLCKSGKVLN 240

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-----GVQPNVVTF 236
           A ++  +M+D + +P+VVTY +++ G C +   + A    +EMM+Q     G   NVV +
Sbjct: 241 AHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTA----LEMMEQMASSDGCGLNVVGY 296

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           + +++ LCK G+  EA  ++E M + G RPD   Y++L++G C  G++  A E    M  
Sbjct: 297 STVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAM 356

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR-----PTVVTYNT 343
            GC  +  +Y  L++G C    +  A  +  EM S G       P+V TYN 
Sbjct: 357 EGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNA 408



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 140/264 (53%), Gaps = 4/264 (1%)

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R+   P++VTF +L+ G   + R  +   L   + A G +P+V +Y  L+ GLC+     
Sbjct: 3   RTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWH 62

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L  +M +  G       PD +TYST+  G CK G V++++EL  ++    + PD +
Sbjct: 63  EAEELVRDMISRGGRS----TPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDAL 118

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            YT ++   C +    EA  L  EM+  G  P ++TFN +++  C+   ++ A  LL+ M
Sbjct: 119 MYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTM 178

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              GV+ D   YNTLMDG C  GR+  A++L   M+++GC  DV +Y   + G CK+ ++
Sbjct: 179 AASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKV 238

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A  +  +M      P VVTYNT
Sbjct: 239 LNAHQVLEQMRDSDHDPNVVTYNT 262



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           ++  G  P+  T+N L+N F K GR      +L  +      P+ V++  L++GLC   R
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 103 IMEAAALFTKLRAFGCK--PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160
             EA  L   + + G +  PD+ TY+TL++G C+ G    +  L +E+ +         +
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRG------LR 114

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           PDA+ Y+ +   LCK   + +A EL  +M      P ++T+ +LI G C   +   A  L
Sbjct: 115 PDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSL 174

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV---------- 270
              M   GV+ +VVT+N +M+ LCK G++ EA +LLE M   G  PD             
Sbjct: 175 LQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCK 234

Query: 271 -------------------------YNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVF 304
                                    YNT++DG C +G+++ A E+   M  S+GC  +V 
Sbjct: 235 SGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVV 294

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            Y  +++G CK    + A S+   M   G RP VVTY++
Sbjct: 295 GYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSS 333



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K    +  +   + +   G  P+  TY  L++  C  GR++    +
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERM 385

Query: 75  LGRILRSCFT-----PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
           +  +           P   T+ +LI GLC   RI +A   F ++R+ GC PD  +Y+T++
Sbjct: 386 VEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIV 445

Query: 130 NGLCRTGHTIVA 141
            GL R+G  + A
Sbjct: 446 EGLARSGRALQA 457



 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           PP V ++N L G L K    D  L  F+R+ S G  PD  +Y+ ++    + GR 
Sbjct: 400 PPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRA 454


>gi|115474407|ref|NP_001060800.1| Os08g0107700 [Oryza sativa Japonica Group]
 gi|113622769|dbj|BAF22714.1| Os08g0107700, partial [Oryza sativa Japonica Group]
          Length = 374

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 182/336 (54%), Gaps = 8/336 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILIN 60
           FD +L   P+   +   N      A++      +SLF+R+  +    + P+L TY+++I+
Sbjct: 42  FDELLH-RPTTSSIVDLNRALSDAARHSPA-VAISLFRRMVMVARPKVPPNLITYSVVID 99

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGCK 119
           C  ++G +   F  LGR++RS +T +A+TF+ L+K LC + R  EA  +   ++   GC 
Sbjct: 100 CCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCT 159

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF- 178
           P+VF+YT L+ GLC    +  AL+L   M   +   G    PD ++Y+T+ +GL +EG  
Sbjct: 160 PNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGY-PPDVVSYNTVINGLLREGRQ 218

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A  LF +M D+ ++PDVVTY S+I     A   ++A  + + M+  G  PN +T N 
Sbjct: 219 LDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNS 278

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++  C +GK ++A  + + M + GV PD   YNTLM   C  GR   A+++F SM   G
Sbjct: 279 LLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG 338

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
              +  +YG L++GY     +     L   M+  GI
Sbjct: 339 HKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGI 374



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 2/153 (1%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD ML    SP  V ++N +   L+K +  D    +  R+   G  P+  T+N L++
Sbjct: 223 YHLFDQMLDQGLSPD-VVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLH 281

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +C  G+ +    V  R+ R    PD  T+ +L+  LC   R MEA  +F  +   G KP
Sbjct: 282 GYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKP 341

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           +  TY TL++G    G ++V ++   +M   NG
Sbjct: 342 NSATYGTLLHGYATEG-SLVKMHHLLDMMVRNG 373


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 113/339 (33%), Positives = 176/339 (51%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+ +  SP       ++ G L K    D    L  ++   G  P+L+ YN LIN  
Sbjct: 317 LMDEMVELGFSPTEAAVSGLVDG-LRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSL 375

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +    ++   +      P+ +T++ LI   C   R+  A + F ++   G    V
Sbjct: 376 CKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETV 435

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           + Y +LING C+ G    A +LF EM N   E      P A T++++  G CK+  V KA
Sbjct: 436 YAYNSLINGQCKFGDLSAAESLFIEMTNKGVE------PTATTFTSLISGYCKDLQVQKA 489

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L+ KM D  I P+V T+T+LI G C  N   EA  LF E++++ ++P  VT+NV++  
Sbjct: 490 FKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEG 549

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C++GK+D+A  LLE M Q G+ PD   Y  L+ G C TGRV++AK+    +       +
Sbjct: 550 YCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLN 609

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              Y  L++GYC+   +  ALS   EM+ +GI   +V +
Sbjct: 610 EMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCH 648



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 169/340 (49%), Gaps = 8/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ++     P  V ++N+L     ++   D    L + ++  GL PD YTY  LI+  
Sbjct: 527 LFDELVERKIKPTEV-TYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGL 585

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GRVS     +  + +     + + +++L+ G C E R+MEA +   ++   G   D+
Sbjct: 586 CSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDL 645

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             +  LI+G  +        +L ++M +         +PD + Y+++ D   KEG   KA
Sbjct: 646 VCHAVLIDGALKQPDRKTFFDLLKDMHDQG------LRPDNVIYTSMIDTYSKEGSFKKA 699

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E +  M  E   P+VVTYT+L+ G C A + + A  LF  M    V PN +T+   ++ 
Sbjct: 700 FECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDN 759

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L K G M EA  L   M++ G+  +   +N ++ GFC  GR + A ++   M  NG   D
Sbjct: 760 LTKEGNMKEAIGLHHAMLK-GLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPD 818

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  LI  YC++  +  ++ L+  ML++G+ P +V YN
Sbjct: 819 CVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYN 858



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 171/362 (47%), Gaps = 41/362 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++N+L   L K       + + + L   GL  D+ TY  L+  FC++ +   G  ++ 
Sbjct: 260 IVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMD 319

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++   F+P     + L+ GL  + +I +A  L  K+  FG  P++F Y  LIN LC+ G
Sbjct: 320 EMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGG 379

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD---------------- 180
               A  L+  M+  N       +P+ ITYS + D  C+ G +D                
Sbjct: 380 DLDKAELLYSNMSLMN------LRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGE 433

Query: 181 -------------------KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
                               A+ LF++M ++ + P   T+TSLI G+C      +A  L+
Sbjct: 434 TVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLY 493

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +M+D G+ PNV TF  +++ LC   KM EAS L + +++  ++P    YN L++G+C  
Sbjct: 494 NKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRD 553

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G++++A EL   M   G + D ++Y  LI+G C    +  A     ++  + ++   + Y
Sbjct: 554 GKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCY 613

Query: 342 NT 343
           + 
Sbjct: 614 SA 615



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 170/362 (46%), Gaps = 41/362 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++IL     ++   D  +S F R+   G+   +Y YN LIN  CK G +S    +
Sbjct: 398 PNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESL 457

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P A TFTSLI G C + ++ +A  L+ K+   G  P+V+T+T LI+GLC 
Sbjct: 458 FIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCS 517

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T     A  LF+E+           KP  +TY+ + +G C++G +DKA EL   M  + +
Sbjct: 518 TNKMAEASELFDELVERK------IKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGL 571

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY  LI G C     ++AK    ++  Q V+ N + ++ +++  C+ G++ EA  
Sbjct: 572 VPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALS 631

Query: 255 -----------------------------------LLELMIQIGVRPDASVYNTLMDGFC 279
                                              LL+ M   G+RPD  +Y +++D + 
Sbjct: 632 ASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYS 691

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G   +A E +  M +  C  +V +Y  L+NG CK  E++ A  L+  M +  + P  +
Sbjct: 692 KEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSI 751

Query: 340 TY 341
           TY
Sbjct: 752 TY 753



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 160/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L K    D    L+  ++ + L P+  TY+ILI+ FC+ GR+      
Sbjct: 363 PNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISY 422

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+++         + SLI G C    +  A +LF ++   G +P   T+T+LI+G C+
Sbjct: 423 FDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCK 482

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L+ +M + NG       P+  T++ +  GLC    + +A ELF ++ +  I
Sbjct: 483 DLQVQKAFKLYNKMID-NG-----ITPNVYTFTALISGLCSTNKMAEASELFDELVERKI 536

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P  VTY  LI G+C     ++A  L  +M  +G+ P+  T+  +++ LC  G++ +A  
Sbjct: 537 KPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKD 596

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            ++ + +  V+ +   Y+ L+ G+C  GR+  A      M   G   D+  + +LI+G  
Sbjct: 597 FIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGAL 656

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  + +    L  +M  +G+RP  V Y +
Sbjct: 657 KQPDRKTFFDLLKDMHDQGLRPDNVIYTS 685



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 150/329 (45%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L           LF  L    + P   TYN+LI  +C+ G++   F +
Sbjct: 503 PNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFEL 562

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    PD  T+  LI GLC+  R+ +A      L     K +   Y+ L++G C+
Sbjct: 563 LEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQ 622

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + AL+   EM        +VC      ++ + DG  K+       +L   M D+ +
Sbjct: 623 EGRLMEALSASCEMIQRGINMDLVC------HAVLIDGALKQPDRKTFFDLLKDMHDQGL 676

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD V YTS+I  +     + +A   +  M+ +   PNVVT+  +MN LCK G+MD A  
Sbjct: 677 RPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGL 736

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M    V P++  Y   +D     G +  A  L  +M   G + +  ++ I+I G+C
Sbjct: 737 LFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAM-LKGLLANTVTHNIIIRGFC 795

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K      A  + SEM   GI P  VTY+T
Sbjct: 796 KLGRFHEATKVLSEMTENGIFPDCVTYST 824



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 147/329 (44%), Gaps = 41/329 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + + L   L K + + TV  LF    + G+ PD YT + ++   C++         
Sbjct: 188 PEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEK 247

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  + F    VT+  LI GLC   R+ EA  +   L   G   DV TY TL+ G CR
Sbjct: 248 IRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCR 307

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  + L +EM     E G    P     S + DGL K+G +D A EL +K+     
Sbjct: 308 LQQFEAGIQLMDEMV----ELGF--SPTEAAVSGLVDGLRKQGKIDDAYELVVKVGR--- 358

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
                                            G  PN+  +N ++N LCK G +D+A  
Sbjct: 359 --------------------------------FGFVPNLFVYNALINSLCKGGDLDKAEL 386

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M  + +RP+   Y+ L+D FC +GR++ A   F  M  +G    V++Y  LING C
Sbjct: 387 LYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQC 446

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++  A SL+ EM +KG+ PT  T+ +
Sbjct: 447 KFGDLSAAESLFIEMTNKGVEPTATTFTS 475



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 128/256 (50%), Gaps = 7/256 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+  DL  + +LI+   K       F +L  +      PD V +TS+I     E    +A
Sbjct: 640 GINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKA 699

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
              +  +    C P+V TYT L+NGLC+ G    A  LF+ M   N        P++ITY
Sbjct: 700 FECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAAN------VPPNSITY 753

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
               D L KEG + +A  L   M  + +  + VT+  +IRGFC    ++EA  +  EM +
Sbjct: 754 GCFLDNLTKEGNMKEAIGLHHAML-KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTE 812

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G+ P+ VT++ ++ E C++G +  + +L + M+  G+ PD   YN L+ G C+ G +++
Sbjct: 813 NGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDK 872

Query: 287 AKELFVSMESNGCMRD 302
           A EL   M   G + D
Sbjct: 873 AFELRDDMLRRGIIPD 888



 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 42/103 (40%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           + NI+     K   +     +   +   G+FPD  TY+ LI  +C+ G V     +   +
Sbjct: 786 THNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTM 845

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           L     PD V +  LI G C    + +A  L   +   G  PD
Sbjct: 846 LNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 182/342 (53%), Gaps = 14/342 (4%)

Query: 4   FDYMLRMHPSPPPVCSFNIL--FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            +YM     SP  +    ++  F  + + K+   ++ +   L   G   D+ +YN+LI+ 
Sbjct: 102 LEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGI---LEESGAVIDVTSYNVLISG 158

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +CK G +     VL R+     +P+A T+ +++  LC   ++ +A  +  +     C PD
Sbjct: 159 YCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPD 215

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V T T LI+  C+      A+ LF EM N        CKPD +TY+ +  G CK G +D+
Sbjct: 216 VVTCTVLIDATCKESGVGQAMKLFNEMRNKG------CKPDVVTYNVLIKGFCKGGRLDE 269

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A     K+      PDV+++  ++R  C    W +A  L   M+ +G  P+VVTFN+++N
Sbjct: 270 AIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILIN 329

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LC+ G + +A  +LE+M + G  P++  +N L+ GFC    ++RA E    M S GC  
Sbjct: 330 FLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYP 389

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D+ +Y IL+   CK+ +++ A+ + S++ SKG  P++++YNT
Sbjct: 390 DIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNT 431



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/324 (32%), Positives = 160/324 (49%), Gaps = 9/324 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S+N+L     K+   +  L +  R+   G+ P+  TY+ ++   C  G++     VLG
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R L+S   PD VT T LI   C ES + +A  LF ++R  GCKPDV TY  LI G C+ G
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+   +++ +    +G  C+PD I+++ I   LC  G    A +L   M  +   P
Sbjct: 266 RLDEAIRFLKKLPS----YG--CQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLP 319

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            VVT+  LI   C      +A  +   M   G  PN  +FN ++   C    +D A   L
Sbjct: 320 SVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYL 379

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E+M+  G  PD   YN L+   C  G+V+ A  +   + S GC   + SY  +I+G  K 
Sbjct: 380 EIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKV 439

Query: 317 KEIEGALSLYSEMLSKGIRPTVVT 340
            + E A+ L  EM  KG++P ++T
Sbjct: 440 GKAELAVELLEEMCYKGLKPDLIT 463



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 162/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +  +L     K       + LF  + + G  PD+ TYN+LI  FCK GR+      
Sbjct: 214 PDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRF 273

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD ++   +++ LC+  R M+A  L   +   GC P V T+  LIN LC+
Sbjct: 274 LKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQ 333

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    ALN+ E M   +G       P++ +++ +  G C    +D+A E    M     
Sbjct: 334 KGLLGKALNVLEMMPK-HGH-----TPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGC 387

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY  L+   C     ++A  +  ++  +G  P+++++N +++ L K GK + A  
Sbjct: 388 YPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVE 447

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE M   G++PD     +++ G    G+V  A + F  ++      + F Y  +I G C
Sbjct: 448 LLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLC 507

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+++   A+   ++M++KG +PT  TY T
Sbjct: 508 KSQQTSLAIDFLADMVAKGCKPTEATYTT 536



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 138/297 (46%), Gaps = 9/297 (3%)

Query: 8   LRMHPS---PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           L+  PS    P V S N++   L     +   + L   +   G  P + T+NILIN  C+
Sbjct: 274 LKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQ 333

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
            G +     VL  + +   TP++ +F  LI+G C    I  A      + + GC PD+ T
Sbjct: 334 KGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVT 393

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  L+  LC+ G    A+ +  ++++        C P  I+Y+T+ DGL K G  + A E
Sbjct: 394 YNILLTALCKDGKVDDAVVILSQLSSKG------CSPSLISYNTVIDGLLKVGKAELAVE 447

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L  +M  + + PD++T TS++ G        EA   F  +    ++PN   +N I+  LC
Sbjct: 448 LLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLC 507

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           K+ +   A   L  M+  G +P  + Y TL+ G    G    A +L   + S G ++
Sbjct: 508 KSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGLVK 564



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 104/223 (46%), Gaps = 6/223 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+  H   P   SFN L       K  D  +   + + S G +PD+ TYNIL+   CK G
Sbjct: 346 MMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDG 405

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +V    V+L ++     +P  +++ ++I GL    +   A  L  ++   G KPD+ T T
Sbjct: 406 KVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCT 465

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           +++ GL R G    A+  F  +      F +  +P+A  Y++I  GLCK      A +  
Sbjct: 466 SVVGGLSREGKVREAMKFFHYLK----RFAI--RPNAFIYNSIITGLCKSQQTSLAIDFL 519

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             M  +   P   TYT+LI+G  Y     +A  L  E+  +G+
Sbjct: 520 ADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGL 562



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 96/170 (56%), Gaps = 3/170 (1%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           L + G +++       M ++  +PDV+  T+LIR FC       A  +   + + G   +
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V ++NV+++  CK+G+++EA R+L+ M   GV P+A+ Y+ ++   C  G++ +A ++  
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               + C  DV +  +LI+  CK   +  A+ L++EM +KG +P VVTYN
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYN 255



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  L +NG+++E SR LE M   G  PD      L+  FC  GR   A ++   +E +G 
Sbjct: 86  LRRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGA 145

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + DV SY +LI+GYCK+ EIE AL +   M   G+ P   TY+ 
Sbjct: 146 VIDVTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDA 186


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 100/261 (38%), Positives = 163/261 (62%), Gaps = 6/261 (2%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           + P+ +T  +LIKGLC + +I +A     KL A G   D  +Y TLI+GLC+ G T  AL
Sbjct: 3   YHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAAL 62

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
           +L + +       G + + +A+ Y+T+  G+CK+  V+ A +L+ +M  + I+P+VVTY+
Sbjct: 63  DLLQRVD------GKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYS 116

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           +LI GF       +A  LF +++ + ++P+  TFN++++  CK+ KM E   +  +M++ 
Sbjct: 117 ALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQ 176

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G+ PD   YN+L+DG+ L   VN AK +F +M   G   D+ SY ILING+CK K+++ A
Sbjct: 177 GIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKA 236

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           ++L++EM  K I P VVTYN+
Sbjct: 237 MNLFNEMHCKNIIPNVVTYNS 257



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 169/327 (51%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   + N L   L              +L ++G   D  +Y  LI+  CK+G       +
Sbjct: 5   PNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDL 64

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+       +AV + ++I G+C +  + +A  L++++ + G  P+V TY+ LI+G   
Sbjct: 65  LQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFV 124

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A++LF ++   N       KPD  T++ + DG CK+  + + K +F  M  + I
Sbjct: 125 VGKLKDAIDLFNKIILEN------IKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGI 178

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVTY SL+ G+    + N AK +F  M   GV P++ ++N+++N  CK  K+D+A  
Sbjct: 179 IPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMN 238

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M    + P+   YN+L+DG   +GR++ A +L   M   G   ++ +Y  +I+   
Sbjct: 239 LFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALF 298

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K  +++ A++L ++   +GI+P++ TY
Sbjct: 299 KTHQVDKAIALITKFKDQGIQPSMYTY 325



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 151/298 (50%), Gaps = 6/298 (2%)

Query: 46  IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME 105
           +G  P+  T N LI   C  G++   F+   +++   F  D V++ +LI GLC       
Sbjct: 1   MGYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRA 60

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           A  L  ++     + +   Y T+I G+C+  H   A +L+ EM +          P+ +T
Sbjct: 61  ALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKG------ISPNVVT 114

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           YS +  G    G +  A +LF K+  ENI PD  T+  L+ GFC      E K +F  MM
Sbjct: 115 YSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMM 174

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            QG+ P+VVT+N +++      +++ A  +   M Q GV PD   YN L++GFC   +V+
Sbjct: 175 KQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVD 234

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +A  LF  M     + +V +Y  LI+G  K+  I  AL L  +M  +G+ P ++TYN+
Sbjct: 235 KAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNS 292



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 76/134 (56%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+NIL     K K  D  ++LF  ++   + P++ TYN LI+   K GR+S    +
Sbjct: 215 PDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQL 274

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      P+ +T+ S+I  L    ++ +A AL TK +  G +P ++TYT LI+GLC+
Sbjct: 275 VDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCK 334

Query: 135 TGHTIVALNLFEEM 148
            G    A N+FE++
Sbjct: 335 GGRLKDARNIFEDL 348



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 9   RMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +MH    PP + ++N +   L K    D  ++L  +    G+ P +YTY ILI+  CK G
Sbjct: 277 QMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGG 336

Query: 67  RVS 69
           R+ 
Sbjct: 337 RLK 339


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 173/329 (52%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V     L   L  +K  D  + +   L + G  PDL  YN +I  FC+  R+   + V
Sbjct: 90  PDVVLCTKLIHGLFTSKTIDKAIQVMHILENHG-HPDLIAYNAIITGFCRANRIDSAYQV 148

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+    F+PD VT+  LI  LC+   +  A     +L    CKP V TYT LI     
Sbjct: 149 LDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLL 208

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ L +EM   N       +PD  TY++I  G+C+EG+VD+A ++   +  +  
Sbjct: 209 QGGIDEAMKLLDEMLEIN------LQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGY 262

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+TY  L+RG      W     L  +M+ +G + NVVT++V+++ +C++GK++E   
Sbjct: 263 APDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVG 322

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G++PD   Y+ L+   C  GRV+ A E+   M S+GC+ D+ +Y  ++   C
Sbjct: 323 LLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLC 382

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K K  + ALS++ ++   G  P   +YN+
Sbjct: 383 KQKRADEALSIFEKLGEVGCSPNASSYNS 411



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 159/329 (48%), Gaps = 8/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL          D  + L   +  I L PD++TYN +I   C+ G V   F +
Sbjct: 194 PTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQI 253

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  I    + PD +T+  L++GL  + +      L + + A GC+ +V TY+ LI+ +CR
Sbjct: 254 ISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCR 313

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G     + L ++M           KPD   Y  +   LCKEG VD A E+   M  +  
Sbjct: 314 DGKVEEGVGLLKDMKKKG------LKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGC 367

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+V Y +++   C     +EA  +F ++ + G  PN  ++N + + L   G    A  
Sbjct: 368 VPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALG 427

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV--SMESNGCMRDVFSYGILING 312
           ++  M+  GV PD   YN+L+   C  G V+ A EL V   MES+ C   V SY I++ G
Sbjct: 428 MILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLG 487

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            CK   +  A+ + + M+ KG RP   TY
Sbjct: 488 LCKVSRVSDAIEVLAAMVDKGCRPNETTY 516



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 156/331 (47%), Gaps = 10/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NIL G L      D+ L    +L      P + TY ILI      G +     +
Sbjct: 159 PDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKL 218

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD  T+ S+I+G+C E  +  A  + + + + G  PDV TY  L+ GL  
Sbjct: 219 LDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLN 278

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G       L  +M A G       C+ + +TYS +   +C++G V++   L   MK + 
Sbjct: 279 QGKWEAGYELMSDMVARG-------CEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKG 331

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD   Y  LI   C     + A  +   M+  G  P++V +N I+  LCK  + DEA 
Sbjct: 332 LKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEAL 391

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + E + ++G  P+AS YN++      TG   RA  + + M   G   D  +Y  LI+  
Sbjct: 392 SIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCL 451

Query: 314 CKNKEIEGALSLYS--EMLSKGIRPTVVTYN 342
           C++  ++ A+ L    EM S   +P+VV+YN
Sbjct: 452 CRDGMVDEAIELLVDMEMESSECKPSVVSYN 482



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++NIL   L     ++    L   + + G   ++ TY++LI+  C+ G+V  G  +
Sbjct: 264 PDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGL 323

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    PD   +  LI  LC E R+  A  +   + + GC PD+  Y T++  LC+
Sbjct: 324 LKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCK 383

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL++FE++    GE G  C P+A +Y+++   L   G   +A  + L+M D+ +
Sbjct: 384 QKRADEALSIFEKL----GEVG--CSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGV 437

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFI--EMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           +PD +TY SLI   C     +EA  L +  EM     +P+VV++N+++  LCK  ++ +A
Sbjct: 438 DPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDA 497

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             +L  M+  G RP+ + Y  L++G    G +N A++L  ++ +   + +  S+  L   
Sbjct: 498 IEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVNMDAISE-HSFERLYKT 556

Query: 313 YCK 315
           +CK
Sbjct: 557 FCK 559



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 8/163 (4%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           V K +   L  KD ++        SL R  C A ++NE+      ++++G +P+VV    
Sbjct: 45  VSKPQTHTLDFKDTHL------LKSLSRS-CKAGNFNESLYFLRHLVNKGHKPDVVLCTK 97

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ L  +  +D+A +++ ++   G  PD   YN ++ GFC   R++ A ++   M++ G
Sbjct: 98  LIHGLFTSKTIDKAIQVMHILENHG-HPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKG 156

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              D+ +Y ILI   C    ++ AL   +++L +  +PTVVTY
Sbjct: 157 FSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTY 199



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G  +E+   L  ++  G +PD  +   L+ G   +  +++A ++   +E++G   D+
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHG-HPDL 126

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +Y  +I G+C+   I+ A  +   M +KG  P +VTYN
Sbjct: 127 IAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYN 165


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 175/334 (52%), Gaps = 9/334 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           +P  V ++ IL  C  + +  D   +   RL   GL          + C C   R     
Sbjct: 120 APLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAV 179

Query: 73  -VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLI 129
            V+L R+      PDA+++ ++IK LC +SR  EA  +  ++   G  C PDV ++ T+I
Sbjct: 180 DVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVI 239

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           +G  + G    A NLF EM     + GVV  PD  TY++I D LCK   +DKA+ +  +M
Sbjct: 240 HGFFKQGEVSKACNLFNEMV----QKGVV--PDVGTYNSIVDALCKARAMDKAEFVLRQM 293

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            D+ + PD VTY ++I G+  +  W E+  +F +M  +G+ P+ VTF+  M+ LCK+G+ 
Sbjct: 294 VDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRS 353

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +A  + + M   G  PD   Y+ L+ G+   GR      LF SM   G + +     IL
Sbjct: 354 KDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINIL 413

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+ + K   ++ A+ +++EM  +G+RP VVTY+T
Sbjct: 414 ISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYST 447



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 168/332 (50%), Gaps = 9/332 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSPGF 72
           P   S+N +   L  +      L + +R+   G    PD+ ++N +I+ F K G VS   
Sbjct: 193 PDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKAC 252

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   +++    PD  T+ S++  LC    + +A  +  ++   G +PD  TY  +I+G 
Sbjct: 253 NLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGY 312

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
             +GH   +  +F +M +     G++  PD +T+S+    LCK G    A+E+F  M  +
Sbjct: 313 SCSGHWKESAKMFRKMTSK----GLI--PDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTK 366

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              PD+V+Y+ L+ G+     + +   LF  M D+G+  N    N++++   K G MDEA
Sbjct: 367 GHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEA 426

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             +   M   GVRP+   Y+TL+  FC  GR+  A E F  M S G   +   Y  LI+G
Sbjct: 427 MLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHG 486

Query: 313 YCKNKEIEGALSLYSEMLSKGI-RPTVVTYNT 343
           +C + ++  A    SEM+SKG+ RP +V +++
Sbjct: 487 FCMHGDLVKAKEFISEMMSKGLHRPNIVFFSS 518



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 172/341 (50%), Gaps = 6/341 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF YM       P + S++IL    A    +  + +LF  +   G+  + +  NILI+  
Sbjct: 359 IFQYMT-TKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAH 417

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G +    +V   +      P+ VT+++LI   C   R+ +A   F+++ + G +P+ 
Sbjct: 418 AKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNT 477

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y +LI+G C  G  + A     EM +       + +P+ + +S+I   LC EG V  A
Sbjct: 478 AVYHSLIHGFCMHGDLVKAKEFISEMMSKG-----LHRPNIVFFSSIIHSLCIEGRVMDA 532

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +++F  +      P +VT+ SLI G+C      +A  +   M+  G++P+VVT N +++ 
Sbjct: 533 QDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSG 592

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK+GK+D+   L   M+   V+P    YN ++DG    GR + AK++F  M  +G   D
Sbjct: 593 YCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVD 652

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y IL+ G C+N   + A++L+ ++ +   +  +   NT
Sbjct: 653 IDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNT 693



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 170/354 (48%), Gaps = 42/354 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP--------- 70
            NIL    AK    D  + +F  +   G+ P++ TY+ LI+ FC+MGR++          
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469

Query: 71  ----------------GFVVLGRILRS-----------CFTPDAVTFTSLIKGLCAESRI 103
                           GF + G ++++              P+ V F+S+I  LC E R+
Sbjct: 470 SIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRV 529

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
           M+A  +F  +   G +P + T+ +LI+G C  G    A  + + M +      V  +PD 
Sbjct: 530 MDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVS------VGIEPDV 583

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +T +T+  G CK G +D    LF +M  + + P  VTY  ++ G   A   + AK +F E
Sbjct: 584 VTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHE 643

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+D G   ++ T+ +++  LC+N   DEA  L   +  +  + D ++ NT+++      R
Sbjct: 644 MIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRR 703

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
              A +LF ++ ++G + +V +YG++I    K   +E A +++S M   G  P+
Sbjct: 704 REEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPS 757



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 6/249 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           +F  +  IG  P + T+N LI+ +C +G++   F VL  ++     PD VT  +L+ G C
Sbjct: 535 VFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYC 594

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
              +I +   LF ++     KP   TY  +++GL R G T  A  +F EM +        
Sbjct: 595 KSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAV--- 651

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              D  TY  +  GLC+    D+A  LF K+   +   D+    ++I          EA 
Sbjct: 652 ---DIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEAN 708

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LF  +   G+ PNV T+ V++  L K G ++EA  +   M + G  P + + N ++   
Sbjct: 709 DLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRML 768

Query: 279 CLTGRVNRA 287
              G + +A
Sbjct: 769 LQKGDIVKA 777



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 6/269 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L          +    +   + S+G+ PD+ T N L++ +CK G++  G ++
Sbjct: 546 PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLIL 605

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P  VT+  ++ GL    R   A  +F ++   G   D+ TY  L+ GLCR
Sbjct: 606 FREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR 665

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
              T  A+ LF ++        + CK D    +T+ + L K    ++A +LF  +    +
Sbjct: 666 NDLTDEAITLFHKLG------AMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGL 719

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY  +IR         EA  +F  M   G  P+    N I+  L + G + +A  
Sbjct: 720 VPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGY 779

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGR 283
            +  +    +  +AS  + LM  F   G+
Sbjct: 780 YMSKVDGTIISLEASTTSLLMSLFSSKGK 808


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 184/357 (51%), Gaps = 29/357 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++N +   L K +  D    + +++   G+ PD  TYN LI+ +  +G+      
Sbjct: 243 PPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVR 302

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      P+ VT ++ +  LC   RI EA   F  + A G K ++ +Y+TL++G  
Sbjct: 303 MFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYA 362

Query: 134 RTGHTIVALNLFEEMA---------------NGNGEFGVV--------------CKPDAI 164
             G  +   NLF  M                NG  + G+V                PD +
Sbjct: 363 TAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVL 422

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY  +    C+ G +D A + F  M D+ + P+   Y  LI+GFC   D  +A+ L  E+
Sbjct: 423 TYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEI 482

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
            ++G+ P +++F  ++N LCK G++ EA R+ +++I+ G + D +++ +L+DG+CL G++
Sbjct: 483 RNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKM 542

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + A  +  +M S G   D+ +YG L+NG CKN  I+  L L+ E+L KG++PT  TY
Sbjct: 543 SEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTY 599



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 167/312 (53%), Gaps = 11/312 (3%)

Query: 37  LSLFKRLNS-----IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFT 91
           ++LF R+++     + L P +YTY+ILI+C C+  R+   F   G +LR     D +  +
Sbjct: 84  VALFNRMSTGTGPRVAL-PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVS 142

Query: 92  SLIKGLCAESRIMEAA-ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
           SL++GLC   R  EA   LF ++   GC PD  +Y+T++  +C  G +  AL++      
Sbjct: 143 SLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVK 202

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
             G     C  + + YST+  GL KEG V +A +LF +M  + + P+VVTY S+I   C 
Sbjct: 203 QGGG----CPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCK 258

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
           A   ++A+ +  +M+  GVQP+ VT+N +++     G+  +A R+ + M   GV P+   
Sbjct: 259 ARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVT 318

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
            +T +   C  GR+  A+E F SM + G   ++ SY  L++GY     +    +L++ M+
Sbjct: 319 CSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMV 378

Query: 331 SKGIRPTVVTYN 342
             GI P    +N
Sbjct: 379 RDGIVPNQHVFN 390



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 154/305 (50%), Gaps = 6/305 (1%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           +LF  +   G+ P+ + +NIL+N + K G V     +   + +    PD +T+ ++I   
Sbjct: 372 NLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAF 431

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C    + +A   F  +   G +P+   Y  LI G C  G  + A  L  E+ N       
Sbjct: 432 CRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKG----- 486

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              P  ++++++ + LCKEG V +A+ +F  +       DV  +TSLI G+C     +EA
Sbjct: 487 -LGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEA 545

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +   M+  G++P++VT+  ++N  CKNG++D+   L   ++  GV+P    Y  ++DG
Sbjct: 546 FRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDG 605

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
               GR   AKE+F  M  +G    + +Y IL+ G C+N   E A++++ ++ +  ++  
Sbjct: 606 LFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFD 665

Query: 338 VVTYN 342
           +V  N
Sbjct: 666 IVILN 670



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 167/364 (45%), Gaps = 30/364 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M+R     P    FNIL    AK       + +F+ +   GL PD+ TY  +I+ F
Sbjct: 373 LFNLMVR-DGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAF 431

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+MG +         ++     P+   +  LI+G C    +++A  L  ++R  G  P +
Sbjct: 432 CRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCI 491

Query: 123 FTYTTLINGLCRTGHTIVA---------------LNLFEEMANG--------------NG 153
            ++ +LIN LC+ G    A               +N+F  + +G              + 
Sbjct: 492 LSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDA 551

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
              V  +PD +TY T+ +G CK G +D    LF ++  + + P   TY  ++ G  +A  
Sbjct: 552 MVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGR 611

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
              AK +F EM++ G+   + T+++++  LC+N   +EA  + + +  + V+ D  + N 
Sbjct: 612 TAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNI 671

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++       R   A+ LF S+   G +  V +Y I++    K   +E A  ++S ML  G
Sbjct: 672 MISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSG 731

Query: 334 IRPT 337
           + PT
Sbjct: 732 LSPT 735



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 137/262 (52%), Gaps = 9/262 (3%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN- 143
           P   T++ LI   C   R+  A A F  L   G K DV   ++L+ GLC    T  A++ 
Sbjct: 101 PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDV 160

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF-LKMKDENINP-DVVTY 201
           LF  M     E G  C PDAI+YST+   +C +G    A ++  + +K     P +VV Y
Sbjct: 161 LFHRMP----ELG--CVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVY 214

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           ++++ G        EA  LF EM  QGV PNVVT+N +++ LCK   +D+A  +L  M+ 
Sbjct: 215 STVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVG 274

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            GV+PD   YNTL+ G+   G+  +A  +F  M S G + +  +    +   CK+  IE 
Sbjct: 275 NGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEE 334

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A   +  ML+KG +  +++Y+T
Sbjct: 335 AREFFDSMLAKGHKLNIISYST 356



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 148/317 (46%), Gaps = 9/317 (2%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y +R     P + SF  L   L K         +F  +   G   D+  +  LI+ +C +
Sbjct: 480 YEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLI 539

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G++S  F V   ++     PD VT+ +L+ G C   RI +   LF +L   G KP  FTY
Sbjct: 540 GKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTY 599

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGV-VCKPDAITYSTITDGLCKEGFVDKAKE 184
             +++GL   G T  A  +F+EM     E G+ V  P   TYS +  GLC+    ++A  
Sbjct: 600 GIILDGLFHAGRTAAAKEMFQEMI----ESGIAVTIP---TYSILLTGLCRNNCTEEAIT 652

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +F K+   N+  D+V    +I     A    EA+ LF  + D G+ P V T+ ++M  L 
Sbjct: 653 VFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLI 712

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K G ++EA  +  +M++ G+ P +   N ++      G + +A      ++    + +  
Sbjct: 713 KEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILFEAS 772

Query: 305 SYGILINGY-CKNKEIE 320
           +  +L++ + CK K  E
Sbjct: 773 TASMLLSLFSCKGKHRE 789



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 5/207 (2%)

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
           +A+ LF  M+ G G    V  P   TYS + D  C+   +D A   F  +  + +  DV+
Sbjct: 82  LAVALFNRMSTGTGP--RVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVI 139

Query: 200 TYTSLIRGFCYANDWNEA-KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
             +SL+RG C A   +EA   LF  M + G  P+ ++++ ++  +C +G+   A  +L +
Sbjct: 140 VVSSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRM 199

Query: 259 MI-QIGVRP-DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
            + Q G  P +  VY+T++ G    G+V  A +LF  M   G   +V +Y  +I+  CK 
Sbjct: 200 AVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKA 259

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + ++ A  +  +M+  G++P  VTYNT
Sbjct: 260 RAVDKAQGILRQMVGNGVQPDNVTYNT 286


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 178/329 (54%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++IL    A     +    L   ++  G+ PD++ YN +I+C  K G++      
Sbjct: 471 PNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 530

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  I      PDAVTF + I G     ++ EAA  F ++   G  P+   YT LING  +
Sbjct: 531 LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFK 590

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+ + AL++F  +       GV+  PD  T S    GL K G V +A ++F ++K++ +
Sbjct: 591 AGNLMEALSIFRRLH----ALGVL--PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGL 644

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TY+SLI GFC   +  +A  L  EM  +G+ PN+  +N +++ LCK+G +  A +
Sbjct: 645 VPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARK 704

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M + G+ PD+  Y+T++DG+C +  V  A  LF  M S G     F Y  L++G C
Sbjct: 705 LFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCC 764

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++E A++L+ EML KG   T +++NT
Sbjct: 765 KEGDMEKAMNLFREMLQKGF-ATTLSFNT 792



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 159/330 (48%), Gaps = 6/330 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  + ++N+L   L K    +    + K + ++G  P+  T+ +LI  +C+   +     
Sbjct: 365 PINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALE 424

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  + +    P AV++ ++I GLC    +  A  L  K+   G KP+V  Y+ LI    
Sbjct: 425 LLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYA 484

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A  L + M+      GV   PD   Y+ I   L K G +++A    L+++   
Sbjct: 485 SEGRIEEARRLLDGMSCS----GVA--PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRG 538

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VT+ + I G+       EA   F EM+D G+ PN   + V++N   K G + EA 
Sbjct: 539 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEAL 598

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +   +  +GV PD    +  + G    GRV  A ++F  ++  G + DVF+Y  LI+G+
Sbjct: 599 SIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 658

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK  E+E A  L+ EM  KGI P +  YN 
Sbjct: 659 CKQGEVEKAFELHDEMCLKGIAPNIFIYNA 688



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 166/364 (45%), Gaps = 42/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + +     L KN      L +F  L   GL PD++TY+ LI+ FCK G V   F +
Sbjct: 611 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL 670

Query: 75  L-------------------------GRILRS----------CFTPDAVTFTSLIKGLCA 99
                                     G I R+             PD+VT++++I G C 
Sbjct: 671 HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCK 730

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
              + EA +LF ++ + G +P  F Y  L++G C+ G    A+NLF EM      F    
Sbjct: 731 SENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG--FATT- 787

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
               ++++T+ DG CK   + +A +LF +M  + I PD VTYT++I   C A    EA  
Sbjct: 788 ----LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANL 843

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           LF EM ++ +  + VT+  +M    K G+  E   L E M+  GV+PD   Y  ++   C
Sbjct: 844 LFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHC 903

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
               +  A +L   +   G +     + +LI   CK +++  A  L  EM   G++P++ 
Sbjct: 904 KEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLA 963

Query: 340 TYNT 343
             NT
Sbjct: 964 ACNT 967



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 169/337 (50%), Gaps = 7/337 (2%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           +  R +    PV  F+IL     +    D   ++F    +  +   L   N L+    K 
Sbjct: 148 FWFRNYGGSSPVV-FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKC 206

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G +   + V   +L +    D  T+T L+  LC    +  A  +  ++   G  P+ F Y
Sbjct: 207 GMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIY 266

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           + +I G+C+ G    A+ L   M    GE G+V  P+  TY+ IT GLC+   +++AK  
Sbjct: 267 SLVIEGMCQVGDIDEAVELKRSM----GEKGLV--PNTYTYTIITAGLCRAKRMNEAKLT 320

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F +M+   + PD    ++LI GF    D +E   +   M+  G+  N++T+NV+++ LCK
Sbjct: 321 FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK 380

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            GKM++A+ +L+ M+ +G +P++  +  L++G+C    + RA EL   ME    +    S
Sbjct: 381 FGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVS 440

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           YG +ING C  K++  A  L  +M   G++P VV Y+
Sbjct: 441 YGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYS 477



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 150/303 (49%), Gaps = 6/303 (1%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D  + L + +   GL P+ YTY I+    C+  R++   +    + ++   PD    ++L
Sbjct: 280 DEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSAL 339

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I G   E  I E   +   + + G   ++ TY  LI+GLC+ G    A  + + M     
Sbjct: 340 IDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVT--- 396

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
              + CKP++ T+  + +G C+E  + +A EL  +M+  N+ P  V+Y ++I G C+  D
Sbjct: 397 ---LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKD 453

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            + A  L  +M   G++PNVV +++++      G+++EA RLL+ M   GV PD   YN 
Sbjct: 454 LSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNA 513

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++      G++  A    + ++  G   D  ++G  I GY K  ++  A   + EML  G
Sbjct: 514 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 573

Query: 334 IRP 336
           + P
Sbjct: 574 LMP 576



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 129/293 (44%), Gaps = 6/293 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D+YTY  L+   CK G +     VL  +      P+   ++ +I+G+C    I EA  L 
Sbjct: 227 DVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELK 286

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
             +   G  P+ +TYT +  GLCR      A   FEEM           KPD    S + 
Sbjct: 287 RSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTG------LKPDYNACSALI 340

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           DG  +EG +D+   +   M    I  +++TY  LI G C      +A  +   M+  G +
Sbjct: 341 DGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCK 400

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN  TF +++   C+   M  A  LL+ M +  + P A  Y  +++G C    ++ A +L
Sbjct: 401 PNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKL 460

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M  +G   +V  Y ILI  Y     IE A  L   M   G+ P +  YN 
Sbjct: 461 LEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNA 513


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 174/338 (51%), Gaps = 12/338 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ + G L      +    LF+ +   G+ P +YTY ILI+ FCK G +      
Sbjct: 451 PDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNW 510

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +LR   TP+ VT+TSLI       ++ +A  LF  +   G KP+V TYT LI+G C+
Sbjct: 511 FDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCK 570

Query: 135 TGHTIVALNLFEEMANGNGEFGVV----------CK-PDAITYSTITDGLCKEGFVDKAK 183
            G    A  ++  M  G+ E   +          C+ P+ ITY  + DGLCK   V++A 
Sbjct: 571 AGQIDKACQIYARM-QGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAH 629

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL   M      P+ + Y +LI GFC       A+ +F++M ++G  PN+ T++ ++N L
Sbjct: 630 ELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSL 689

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K  ++D   ++L  M++    P+  +Y  ++DG C  G+   A  L + ME  GC  +V
Sbjct: 690 FKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNV 749

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +Y  +I+G+ K  +IE  L LY +M SKG  P  +TY
Sbjct: 750 ITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITY 787



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 164/347 (47%), Gaps = 30/347 (8%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL---- 75
           FN L     K++ Y     LFK++   G  P    YNI I   C    + PG  +L    
Sbjct: 345 FNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEEL-PGSDLLELAE 403

Query: 76  ---GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
                +L      + V  ++  + LC   +  +A  +  ++ + G  PD  TY+ +I  L
Sbjct: 404 KAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFL 463

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C       A  LFEEM       G+V  P   TY+ + D  CK G + +A+  F +M  +
Sbjct: 464 CDASKVEKAFLLFEEMKKN----GIV--PSVYTYTILIDSFCKAGLIQQARNWFDEMLRD 517

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N  P+VVTYTSLI  +  A    +A  LF  M+ +G +PNVVT+  +++  CK G++D+A
Sbjct: 518 NCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKA 577

Query: 253 SRLLELM--------IQIGVR--------PDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            ++   M        I +  +        P+   Y  L+DG C   RV  A EL  +M  
Sbjct: 578 CQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSV 637

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           NGC  +   Y  LI+G+CK  ++E A  ++ +M  +G  P + TY++
Sbjct: 638 NGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSS 684



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 182/418 (43%), Gaps = 81/418 (19%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD MLR + +P  V   +++   L   K +D    LF+ +   G  P++ TY  LI+  C
Sbjct: 511 FDEMLRDNCTPNVVTYTSLIHAYLKARKVFDAN-KLFEMMLLEGSKPNVVTYTALIDGHC 569

Query: 64  KMGRVSPGFVVLGRIL----------------RSCFTPDAVTFTSLIKGLCAESRIMEAA 107
           K G++     +  R+                   C TP+ +T+ +L+ GLC  +R+ EA 
Sbjct: 570 KAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAH 629

Query: 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN----------------- 150
            L   +   GC+P+   Y  LI+G C+TG    A  +F +M+                  
Sbjct: 630 ELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSL 689

Query: 151 -GNGEFGVV-----------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
                  +V           C P+ + Y+ + DGLCK G  ++A  L LKM++    P+V
Sbjct: 690 FKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNV 749

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           +TYT++I GF       +   L+ +M  +G  PN +T+ V++N  C  G +DEA RLL+ 
Sbjct: 750 ITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDE 809

Query: 259 MIQ------------------------IGVR---------PDASVYNTLMDGFCLTGRVN 285
           M Q                        IG+          P  S+Y  L+D F   GR+ 
Sbjct: 810 MKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLE 869

Query: 286 RAKELFVSMESNGCM--RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            A  L   + S+  +   + + Y  LI       +++ A  LY+ M++K + P + T+
Sbjct: 870 GALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELSTF 927



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 151/365 (41%), Gaps = 50/365 (13%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
            N L     +N  ++  L    RL   G      TYN LI  F +  ++   F+V   + 
Sbjct: 173 LNFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMS 232

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            S F  D  T       LC   R  +A +L  K       PD   Y  +++GLC      
Sbjct: 233 NSGFRMDGCTLGCFAYSLCKAGRCGDALSLLEKEEFV---PDTVFYNRMVSGLCEASLFQ 289

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A+++ + M +      + C P+ +TY  +  G   +G + + K +   M  E   P+  
Sbjct: 290 EAMDILDRMRS------ISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNRE 343

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN------------- 246
            + SL+  +C + D++ A  LF +M+  G QP  + +N+ +  +C N             
Sbjct: 344 MFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAE 403

Query: 247 ----------------------------GKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
                                       GK D+A  ++  M+  G  PD S Y+ ++   
Sbjct: 404 KAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFL 463

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   +V +A  LF  M+ NG +  V++Y ILI+ +CK   I+ A + + EML     P V
Sbjct: 464 CDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNV 523

Query: 339 VTYNT 343
           VTY +
Sbjct: 524 VTYTS 528



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 144/317 (45%), Gaps = 4/317 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N +   L +   +   + +  R+ SI   P++ TY IL++     G++     +
Sbjct: 270 PDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRI 329

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+   F SL+   C       A  LF K+   GC+P    Y   I  +C 
Sbjct: 330 LSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICS 389

Query: 135 TGHTIVA--LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
                 +  L L E+  +   + GVV   + +  S     LC  G  DKA E+  +M  +
Sbjct: 390 NEELPGSDLLELAEKAYSEMLDLGVVL--NKVNVSNFARCLCGAGKFDKAFEIICEMMSK 447

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              PD  TY+ +I   C A+   +A  LF EM   G+ P+V T+ ++++  CK G + +A
Sbjct: 448 GFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQA 507

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
               + M++    P+   Y +L+  +    +V  A +LF  M   G   +V +Y  LI+G
Sbjct: 508 RNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDG 567

Query: 313 YCKNKEIEGALSLYSEM 329
           +CK  +I+ A  +Y+ M
Sbjct: 568 HCKAGQIDKACQIYARM 584



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 155/364 (42%), Gaps = 50/364 (13%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N L     +    DT   + + +++ G   D  T        CK GR      +L + 
Sbjct: 207 TYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLEK- 265

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING------- 131
               F PD V +  ++ GLC  S   EA  +  ++R+  C P+V TY  L++G       
Sbjct: 266 --EEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQL 323

Query: 132 ----------------------------LCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
                                        C++     A  LF++M          C+P  
Sbjct: 324 GRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCG------CQPGY 377

Query: 164 ITYSTITDGLCK------EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           + Y+     +C          ++ A++ + +M D  +  + V  ++  R  C A  +++A
Sbjct: 378 LLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKA 437

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +  EMM +G  P+  T++ ++  LC   K+++A  L E M + G+ P    Y  L+D 
Sbjct: 438 FEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDS 497

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           FC  G + +A+  F  M  + C  +V +Y  LI+ Y K +++  A  L+  ML +G +P 
Sbjct: 498 FCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPN 557

Query: 338 VVTY 341
           VVTY
Sbjct: 558 VVTY 561



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 70/315 (22%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    ++ L     K    +    +F +++  G  P+LYTY+ LIN   K  R+     V
Sbjct: 642 PNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKV 701

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL-- 132
           L ++L +  TP+ V +T +I GLC   +  EA  L  K+   GC P+V TYT +I+G   
Sbjct: 702 LSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGK 761

Query: 133 ---------------------------------CRTGHTIVALNLFEEMANG-------- 151
                                            C TG    A  L +EM           
Sbjct: 762 IGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISS 821

Query: 152 --------NGEF----GVVCK-------PDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
                   N EF    G++ +       P    Y  + D   K G ++ A  L   +++ 
Sbjct: 822 YRKIIEGFNREFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNL---LEEI 878

Query: 193 NINPDVVT-----YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           + +P +       YTSLI    +A+  ++A  L+  M+++ V P + TF  ++  L + G
Sbjct: 879 SSSPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVG 938

Query: 248 KMDEASRLLELMIQI 262
           K  EA +L + + Q+
Sbjct: 939 KWQEALQLSDSICQM 953


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 174/332 (52%), Gaps = 10/332 (3%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P   S+  L   L  ++     + L + +   G+ PD+ TY  LI   C    V    
Sbjct: 90  SRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAV 149

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  +  S   P+ V ++ L+ G C   R      +F ++   G +PDV  YT LI+ L
Sbjct: 150 ELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSL 209

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           CR G    A  + + M     E G+  +P+ +TY+ + + +CKEG V +A +L   M ++
Sbjct: 210 CRHGKVKKAARVMDMMT----ERGL--EPNVVTYNVLINSMCKEGSVREALDLRKNMSEK 263

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG---VQPNVVTFNVIMNELCKNGKM 249
            + PDVVTY +LI G     + +EA  L  EMM QG   V+P+++TFN +++ LCK G M
Sbjct: 264 GVQPDVVTYNTLITGLSSVLEMDEAMALLEEMM-QGETRVRPDLMTFNSVIHGLCKIGWM 322

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +A ++  +M + G R +   +N L+ G     +V +A EL   M S+G   D F+Y IL
Sbjct: 323 RQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSIL 382

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           ING+CK +++E A S  SEM  +G+ P  V Y
Sbjct: 383 INGFCKMRQVERAESYLSEMRHQGMEPEPVHY 414



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 164/328 (50%), Gaps = 5/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ L     K   +++V  +F+ ++  G+ PD+  Y  LI+  C+ G+V     V
Sbjct: 162 PNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARV 221

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      P+ VT+  LI  +C E  + EA  L   +   G +PDV TY TLI GL  
Sbjct: 222 MDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSS 281

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ L EEM  G        +PD +T++++  GLCK G++ +A ++   M +   
Sbjct: 282 VLEMDEAMALLEEMMQGETRV----RPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGC 337

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++V +  LI G    +   +A  L  EM   G+QP+  T+++++N  CK  +++ A  
Sbjct: 338 RCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAES 397

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  M   G+ P+   Y  L+   C  G + +A++LF  M+ N C  D  +Y  +I+G  
Sbjct: 398 YLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRN-CKLDAAAYSTMIHGAF 456

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K+ E + A     +M+ +G+ P  VTY+
Sbjct: 457 KSGEKKIAEEFLKDMIDEGLIPDAVTYS 484



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 145/264 (54%), Gaps = 13/264 (4%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRA----FGCKPDVFTYTTLINGLCRTGHTIVA 141
           DAV++ +++  LC +   ++AA    ++ +       +P+  +YTTL+  LC       A
Sbjct: 55  DAVSYNTVLAALCRQG-CLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQA 113

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
           + L   M +     GV  +PD +TY T+  GLC    VD A EL  +M +  I P+VV Y
Sbjct: 114 VGLLRSMQD----CGV--RPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVY 167

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           + L+ G+C    W     +F EM  +G++P+VV +  +++ LC++GK+ +A+R++++M +
Sbjct: 168 SCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTE 227

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G+ P+   YN L++  C  G V  A +L  +M   G   DV +Y  LI G     E++ 
Sbjct: 228 RGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDE 287

Query: 322 ALSLYSEMLS--KGIRPTVVTYNT 343
           A++L  EM+     +RP ++T+N+
Sbjct: 288 AMALLEEMMQGETRVRPDLMTFNS 311



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 158/328 (48%), Gaps = 20/328 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL--NSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P V ++N L   L+     D  ++L + +      + PDL T+N +I+  CK+G +    
Sbjct: 267 PDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQAL 326

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V   +  +    + V F  LI GL    ++ +A  L  ++ + G +PD FTY+ LING 
Sbjct: 327 QVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGF 386

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+      A +   EM +   E      P+ + Y  +   +C +G + +A++LF +M D 
Sbjct: 387 CKMRQVERAESYLSEMRHQGME------PEPVHYIPLLKAMCDQGMMGQARDLFNEM-DR 439

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N   D   Y+++I G   + +   A+    +M+D+G+ P+ VT+++ +N   K+G +  A
Sbjct: 440 NCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAA 499

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD-------VFS 305
            R+L+ M   G  PD +V+++L+ G+   G   +  EL   M +     D       V S
Sbjct: 500 ERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTS 559

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKG 333
            G  I G    +++  +L  +   +SKG
Sbjct: 560 LGASIEG----QKLLQSLPGFDTEISKG 583


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 185/396 (46%), Gaps = 67/396 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L          SL +++ + G  P+L T+ ++I   CK G +   F V
Sbjct: 134 PNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRV 193

Query: 75  LGRI--LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           +  +  + S  +PD +TF S++ GLC E RI++A  +F +    GC+P+V TY+TLI+GL
Sbjct: 194 VDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGL 253

Query: 133 CRTGHTIVALNLFEEMAN--------------------GNGEFGVV---------CKPDA 163
            +      AL L  +M                      G  E  VV         C PDA
Sbjct: 254 SKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDA 313

Query: 164 ITYSTITDG-----------------------------------LCKEGFVDKAKELFLK 188
           +TY+T+ DG                                   LC+ G  D+A E+   
Sbjct: 314 VTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDY 373

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM-DQGVQPNVVTFNVIMNELCKNG 247
           M      P+ +TY+S++ G C A    EA   F +M  D+ V P+V+ ++ +++ LCK G
Sbjct: 374 MAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAG 433

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+DEA   LE MI+ G  PD   ++ L++G C  GR++   ELF  M   GC+ D+ +Y 
Sbjct: 434 KIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYA 493

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            L++  C+   ++ A  L+ +M S G+ P   T  T
Sbjct: 494 TLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRT 529



 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 180/351 (51%), Gaps = 36/351 (10%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K++  D  ++LFK++    ++PD+ TY  LI+   K  RV   + +          P 
Sbjct: 5   LCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPT 64

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLR-AFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
            VT+ ++I GLC   RI  A  L+  +   FG +P V TY+TLI+GLCR         L 
Sbjct: 65  VVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLL 124

Query: 146 EEMAN------------------GNGE----FGVV-------CKPDAITYSTITDGLCKE 176
           EEMA                   G G     F ++       C P+ IT+  I  GLCKE
Sbjct: 125 EEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKE 184

Query: 177 GFVDKA----KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           G ++ A     E+F  M +  ++PDV+T+ S++ G C      +A  +F   +++G +PN
Sbjct: 185 GEIEAAFRVVDEMF--MIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPN 242

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           VVT++ +++ L K  KMDEA +LL  M+++G R +   Y+T++DG    GR+  A  +  
Sbjct: 243 VVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLR 302

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M   GC+ D  +Y  LI+G+ K + +  A+ L  EML  G  P+VVTY T
Sbjct: 303 QMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTT 353



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/315 (35%), Positives = 166/315 (52%), Gaps = 7/315 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L+K    D  L L  ++  +G   +  TY+ +++   K+GR+    VV
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++  +   PDAVT+ +LI G     R+ EA  L  ++   G  P V TYTTL +GLCR
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDEN 193
           +G    A+ + + MA         C P+AITYS+I DGLCK G V +A   F KM +DE 
Sbjct: 361 SGRFDEAVEILDYMAARG------CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 414

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P V+ Y++LI G C A   +EA      M+  G  P+VVTF++++N LC  G++D   
Sbjct: 415 VAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGL 474

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   M + G  PD   Y TL+D  C   RV+ A +LF  M S+G   D  +   +I+G 
Sbjct: 475 ELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGL 534

Query: 314 CKNKEIEGALSLYSE 328
            +    E A  +  E
Sbjct: 535 LEVNRDEDAKRIQDE 549



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 159/288 (55%), Gaps = 7/288 (2%)

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           +I+  CK  +V     +  +++     PD VT+ +LI GL  + R+ EA  LF + RA G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           C P V TY T+I+GLC+ G    AL L+++MA     FG   +P  +TYST+ DGLC++ 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAI---HFGF--RPTVVTYSTLIDGLCRDH 115

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            VDK  +L  +M      P+ VTY +L+          EA  L  +M   G  P ++TF 
Sbjct: 116 EVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFG 175

Query: 238 VIMNELCKNGKMDEASRLLE--LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +I+  LCK G+++ A R+++   MI+ G+ PD   +N+++DG C   R+  A  +F    
Sbjct: 176 LIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRAL 235

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             GC  +V +Y  LI+G  K  +++ AL L ++M+  G R   VTY+T
Sbjct: 236 ERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYST 283



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 178/369 (48%), Gaps = 48/369 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K +       LF+   + G  P + TYN +I+  CK GR+     +
Sbjct: 28  PDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTL 87

Query: 75  LGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
              + +   F P  VT+++LI GLC +  + +   L  ++   GC P+  TY TL+N L 
Sbjct: 88  YDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALL 147

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA----KELFLKM 189
             G +  A +L E+MA  NG     C P+ IT+  I  GLCKEG ++ A     E+F  M
Sbjct: 148 GQGRSKEAFSLLEQMA-ANG-----CPPELITFGLIIKGLCKEGEIEAAFRVVDEMF--M 199

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            +  ++PDV+T+ S++ G C      +A  +F   +++G +PNVVT++ +++ L K  KM
Sbjct: 200 IESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKM 259

Query: 250 DEASRLLELMIQIGVR-----------------------------------PDASVYNTL 274
           DEA +LL  M+++G R                                   PDA  YNTL
Sbjct: 260 DEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTL 319

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DGF    R+  A  L   M   G    V +Y  L +G C++   + A+ +   M ++G 
Sbjct: 320 IDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGC 379

Query: 335 RPTVVTYNT 343
            P  +TY++
Sbjct: 380 APNAITYSS 388



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 172/366 (46%), Gaps = 44/366 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L ++   D    L + +   G  P+  TYN L+N     GR    F +
Sbjct: 99  PTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSL 158

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--GCKPDVFTYTTLINGL 132
           L ++  +   P+ +TF  +IKGLC E  I  A  +  ++     G  PDV T+ ++++GL
Sbjct: 159 LEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGL 218

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK---- 188
           C+    + A N+F+            C+P+ +TYST+ DGL K   +D+A +L  K    
Sbjct: 219 CKEQRILDAHNVFKRALERG------CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL 272

Query: 189 -------------------------------MKDENINPDVVTYTSLIRGFCYANDWNEA 217
                                          M+D    PD VTY +LI GF       EA
Sbjct: 273 GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREA 332

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             L  EM++ G  P+VVT+  + + LC++G+ DEA  +L+ M   G  P+A  Y++++DG
Sbjct: 333 VGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 392

Query: 278 FCLTGRVNRAKELFVSMESNGCMR-DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
            C  GRV  A   F  M  +  +   V +Y  LI+G CK  +I+ A      M+  G  P
Sbjct: 393 LCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIP 452

Query: 337 TVVTYN 342
            VVT++
Sbjct: 453 DVVTFS 458



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 2/130 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ M R     P V +++ L   L K    D      +R+   G  PD+ T++ILIN  C
Sbjct: 406 FEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLC 465

Query: 64  KMGRVSPGFVVL-GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
             GR+  G  +  G   R C  PD VT+ +L+  LC  SR+ EA  LF ++R+ G  PD 
Sbjct: 466 DAGRIDTGLELFRGMAERGC-VPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDR 524

Query: 123 FTYTTLINGL 132
            T  T+I+GL
Sbjct: 525 STRRTMIHGL 534


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 179/363 (49%), Gaps = 35/363 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P   ++N++   L K +       + K + +   + PDL TY+ +IN FCK G +     
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 74  VLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           +L  ++ R    PD VT+TS++ GLC + ++  A  +  +++  G +PD FT++ LI G 
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVC--------------------------------K 160
           C       AL L++E+   +     V                                 K
Sbjct: 127 CNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWK 186

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           PD +TY+ + DG CK G ++KA ++   M+     P+VVTY+SL+ G C A D ++A  L
Sbjct: 187 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 246

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           F  M  +G  PNVVT+  +++ LC   K+D A  L++ M       D   YN L+DG+C 
Sbjct: 247 FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCR 306

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM-LSKGIRPTVV 339
            GR+  AK+LF  M +  C+ D  +Y  L+ G+C    +E A  L   M  + GI P VV
Sbjct: 307 LGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVV 366

Query: 340 TYN 342
           TY+
Sbjct: 367 TYS 369



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 177/361 (49%), Gaps = 43/361 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K    D  L LF+R+ S G  P++ TY  LI+  C   +V    ++
Sbjct: 222 PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 281

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  +C   D V++ +L+ G C   RI EA  LF ++ A  C PD  TYT L+ G C 
Sbjct: 282 MDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCN 341

Query: 135 TGHTIVALNLFEEMANGNG------EFGVVCK------------------------PDAI 164
                 A  L E M    G       + +V                          P+A+
Sbjct: 342 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAV 401

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENIN-PDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           TYS++ DGLCK G V+ A E+      +N++ PDVVTYT +I G C  +   EA  L  E
Sbjct: 402 TYSSLIDGLCKAGRVNHAMEVL-----KNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEE 456

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+++ V+P+V TFN ++  LC+ G MDEA +LL  M   G+ P    Y TL++GF  TGR
Sbjct: 457 MVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGR 516

Query: 284 VNRAKELFVSME-------SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           +  A ELF  M        S   +    ++  LI G CK +EI+ A+++  E+ S+   P
Sbjct: 517 MEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEP 576

Query: 337 T 337
            
Sbjct: 577 A 577



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 182/364 (50%), Gaps = 49/364 (13%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLN--SIGLF-PDLYTYNILINCFCKMGRVSPGFVVL 75
           S + L   L + +       LF+ +     G + PD+ TY  LI+ FCK G +     +L
Sbjct: 153 SSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKML 212

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
           G +      P+ VT++SL+ GLC    + +A  LF ++ + GC P+V TYTTLI+GLC  
Sbjct: 213 GVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAA 272

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A  L +EM          C  D ++Y+ + DG C+ G +++AK+LF +M  ++  
Sbjct: 273 HKVDAARLLMDEMT------ATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCL 326

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           PD +TYT L+RGFC A+   EA+ L   M    G+ P+VVT+++++    +  +  EA+ 
Sbjct: 327 PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAE 386

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            ++ MI   V P+A  Y++L+DG C  GRVN A E+  +++      DV +Y I+I G C
Sbjct: 387 FIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKP----DVVTYTIVIEGLC 442

Query: 315 KNKEIEGALSLYSEMLSK-----------------------------------GIRPTVV 339
                E AL+L  EM++K                                   G+ P +V
Sbjct: 443 GTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMV 502

Query: 340 TYNT 343
           TY T
Sbjct: 503 TYTT 506



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 149/269 (55%), Gaps = 9/269 (3%)

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR-AFGCKPDVFTYTTLINGLCRTGH 137
           +R    P+  T+  ++ GLC      +A  +  ++R      PD+ TY+T+ING C+ G 
Sbjct: 1   MREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGE 60

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A  +  EM   +G       PD +TY+++ DGLC++G +D+A E+  +MK + + PD
Sbjct: 61  MDRACEILREMVTRDG-----MAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPD 115

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL-- 255
             T+++LI G+C A   +EA  L+ E++    + + V+ + ++  LC+  ++ EA  L  
Sbjct: 116 KFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQ 175

Query: 256 -LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            +E+      +PD   Y  L+DGFC +G + +A ++   ME   C+ +V +Y  L++G C
Sbjct: 176 EMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLC 235

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  +++ AL L+  M SKG  P VVTY T
Sbjct: 236 KAGDLDQALDLFRRMTSKGCVPNVVTYTT 264



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 129/258 (50%), Gaps = 19/258 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++I+    ++ K +       + + +  + P+  TY+ LI+  CK GRV+    V
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV 422

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    PD VT+T +I+GLC   R  EA  L  ++     +P V T+ ++I  LCR
Sbjct: 423 LKNVDK----PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCR 478

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-- 192
            G    A  L   MA    E      P  +TY+T+ +G  + G ++ A ELF  M+ +  
Sbjct: 479 LGDMDEAWKLLVAMAAHGLE------PGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAK 532

Query: 193 ------NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
                 N+ P+   +++LIRG C A + ++A  +  E+  +  +P       I++ L + 
Sbjct: 533 KSSSAANLVPEQA-FSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRA 591

Query: 247 GKMDEASRLLELMIQIGV 264
           G+ +EA +L+  + ++G+
Sbjct: 592 GRTEEAGKLINSISKVGL 609


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 166/308 (53%), Gaps = 6/308 (1%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            LSL + +   G  P + TYN  I   CK+GR+S     L  +L +   PD V++ +LI 
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIY 382

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
           G C    +M+A  LF +LR+    P + TY TL++GLCR G   VA  L  EM N     
Sbjct: 383 GYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG--- 439

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
                PD +TY+ + +G CK G +  A+E F +M  E +  D   Y + I G     D +
Sbjct: 440 ---IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTS 496

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
            A  L  EM+ +G  P+++ +NV+++ LCK G ++EAS LL+ M+  GV PD   Y +++
Sbjct: 497 RAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSII 556

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
                 GR+ + +E+F  M S G    V +Y +LI+G+     +E A   +SEM  KGI 
Sbjct: 557 HAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGIL 616

Query: 336 PTVVTYNT 343
           P V+TYN+
Sbjct: 617 PNVITYNS 624



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 168/330 (50%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N L     +  +      LF  L SI LFP + TYN L++  C+ G +     +
Sbjct: 372 PDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL 431

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD VT+T L+ G C    +  A   F ++   G + D + Y T I G  +
Sbjct: 432 KVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELK 491

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G T  A +L EEM A G         PD I Y+ + DGLCK G +++A EL  KM  + 
Sbjct: 492 LGDTSRAFSLQEEMLAKG-------FPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTYTS+I          + + +F EM+ +G+ P+VVT+ V+++     G+++ A 
Sbjct: 545 VIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAF 604

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
                M + G+ P+   YN+L++G C   R+++A   F  M   G   + +SY ILIN  
Sbjct: 605 IYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINEN 664

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C     + ALSLY +ML +G++P   T++ 
Sbjct: 665 CNMGNWQEALSLYKQMLDRGVQPDSCTHSA 694



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 168/342 (49%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             +FD M++   SP  V + N +   L         + +++ +   G+ P + TYN L++
Sbjct: 184 LSVFDKMIKSRLSPD-VKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLD 242

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK G+V  G  +L  + R    P+ VT+  LI GL  +    +A  L  ++   G K 
Sbjct: 243 SYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV 302

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
             +TY  LI G    G    AL+L EEM            P   TY++   GLCK G + 
Sbjct: 303 SAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGA------SPTVATYNSFIYGLCKLGRMS 356

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A +    M   N+ PDVV+Y +LI G+C   +  +A  LF E+    + P +VT+N ++
Sbjct: 357 DAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLL 416

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LC+ G+++ A +L   MI  G+ PD   Y  L++G C  G ++ A+E F  M   G  
Sbjct: 417 DGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLE 476

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            D ++Y   I G  K  +   A SL  EML+KG  P ++ YN
Sbjct: 477 LDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYN 518



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 158/327 (48%), Gaps = 7/327 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD +  ++  P  + ++N L   L +    +    L   + + G+ PD+ TY IL+N
Sbjct: 394 FLLFDELRSIYLFPT-IVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CKMG +S        +L      D+  + + I G         A +L  ++ A G  P
Sbjct: 453 GSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPP 512

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+  Y  +++GLC+ G+   A  L ++M +     GV+  PD +TY++I     + G + 
Sbjct: 513 DLIIYNVVVDGLCKLGNLEEASELLQKMVSD----GVI--PDYVTYTSIIHAHLENGRLR 566

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           K +E+F +M  + + P VVTYT LI G         A   F EM ++G+ PNV+T+N ++
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N LCK  +MD+A      M++ G+ P+   Y  L++  C  G    A  L+  M   G  
Sbjct: 627 NGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQ 686

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYS 327
            D  ++  L+    K+ +++    L S
Sbjct: 687 PDSCTHSALLKQLGKDCKLQAVRQLES 713



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 145/286 (50%), Gaps = 6/286 (2%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
           ++LI  + K   V     V  ++++S  +PD      +++ L  +  + +A  ++  +  
Sbjct: 168 DLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE 227

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           FG KP + TY TL++  C+ G     L+L  EM          C P+ +TY+ + +GL K
Sbjct: 228 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRG------CAPNDVTYNVLINGLSK 281

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           +G  ++AK L  +M    +     TY  LI G+       EA  L  EM+ +G  P V T
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVAT 341

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N  +  LCK G+M +A + L  M+   + PD   YNTL+ G+C  G + +A  LF  + 
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR 401

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           S      + +Y  L++G C+  E+E A  L  EM+++GI P +VTY
Sbjct: 402 SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTY 447



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 149/324 (45%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
            ++L    +K    +  LS+F ++    L PD+   N ++        +S    V   + 
Sbjct: 167 LDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMG 226

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P  VT+ +L+   C   ++ +   L ++++  GC P+  TY  LINGL + G   
Sbjct: 227 EFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFE 286

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L  EM           K  A TY+ +  G   +G + +A  L  +M  +  +P V 
Sbjct: 287 QAKGLIGEMLKTG------LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVA 340

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY S I G C     ++A     +M+   + P+VV++N ++   C+ G + +A  L + +
Sbjct: 341 TYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDEL 400

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
             I + P    YNTL+DG C  G +  A++L V M + G   D+ +Y IL+NG CK   +
Sbjct: 401 RSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSL 460

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A   + EML +G+      Y T
Sbjct: 461 SMAQEFFDEMLHEGLELDSYAYAT 484



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 7/223 (3%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           SL + + + G  PDL  YN++++  CK+G +     +L +++     PD VT+TS+I   
Sbjct: 500 SLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAH 559

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
               R+ +   +F ++ + G  P V TYT LI+G    G    A   F EM     E G+
Sbjct: 560 LENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQ----EKGI 615

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           +  P+ ITY+++ +GLCK   +D+A   F +M ++ I P+  +YT LI   C   +W EA
Sbjct: 616 L--PNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEA 673

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
             L+ +M+D+GVQP+  T + ++ +L K+ K+ +A R LE ++
Sbjct: 674 LSLYKQMLDRGVQPDSCTHSALLKQLGKDCKL-QAVRQLESLL 715


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 14/341 (4%)

Query: 5   DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           DY  R+        S N +   L K      V S++K +    +  ++ T++++IN  CK
Sbjct: 187 DYGFRL-----SALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCK 241

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
           +G+      V+  +    F+P  +T+ ++I G C   ++ +A AL  ++ A    P+  T
Sbjct: 242 VGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT 301

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           +  LI+G CR  +   A  +FEEM           +P+ +TY+++ +GLC  G +D+A  
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQG------LQPNVVTYNSLINGLCSNGKLDEALG 355

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L  KM    + P+VVTY +LI GFC      EA+ +  ++  +G+ PNV+TFN +++   
Sbjct: 356 LQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYG 415

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K G+MD+A  L  +M+  GV P+ S YN L+ GFC  G V  A++L   ME NG   D+ 
Sbjct: 416 KAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLV 475

Query: 305 SYGILINGYCKNKEIEGALSLYSEML---SKGIRPTVVTYN 342
           +Y IL++  CK  E   A+ L  EM     KG R  +VTYN
Sbjct: 476 TYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYN 516



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 175/329 (53%), Gaps = 9/329 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +F+++   L K   +     + + + + G  P + TYN +I+ +CK G++     +L 
Sbjct: 229 VVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLK 288

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ +TF  LI G C +  +  A  +F +++  G +P+V TY +LINGLC  G
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL L ++M+      G+  KP+ +TY+ + +G CK+  + +A+E+   +    + P
Sbjct: 349 KLDEALGLQDKMS------GMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAP 402

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +V+T+ +LI  +  A   ++A  L   M+D GV PNV T+N ++   C+ G + EA +L 
Sbjct: 403 NVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLA 462

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS---MESNGCMRDVFSYGILINGY 313
           + M   G++ D   YN L+D  C  G   +A  L      ME  G   ++ +Y +LI G+
Sbjct: 463 KEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGF 522

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           C   ++E A  L +EML KG+ P   TY+
Sbjct: 523 CNKGKLEEANRLLNEMLEKGLIPNRTTYD 551



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 167/322 (51%), Gaps = 9/322 (2%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLF--PDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           L    AKN HY    ++F  L+ +G +   +    ++L+  + K G +        R   
Sbjct: 129 LLDSFAKNAHYSNS-TIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGD 187

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
             F   A++   ++  L  E RI    +++ ++       +V T+  +INGLC+ G    
Sbjct: 188 YGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQK 247

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A ++ E+M      +G    P  ITY+TI DG CK G + KA  L  +M  + I+P+ +T
Sbjct: 248 AGDVVEDMK----AWGF--SPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT 301

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           +  LI GFC   +   AK +F EM  QG+QPNVVT+N ++N LC NGK+DEA  L + M 
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMS 361

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
            +G++P+   YN L++GFC    +  A+E+   +   G   +V ++  LI+ Y K   ++
Sbjct: 362 GMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMD 421

Query: 321 GALSLYSEMLSKGIRPTVVTYN 342
            A  L S ML  G+ P V TYN
Sbjct: 422 DAFLLRSMMLDTGVCPNVSTYN 443



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 162/327 (49%), Gaps = 25/327 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +     K        +L K + +  + P+  T+NILI+ FC+   V+    V
Sbjct: 262 PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKV 321

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R    P+ VT+ SLI GLC+  ++ EA  L  K+   G KP+V TY  LING C+
Sbjct: 322 FEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCK 381

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  L    EM +  G+ G+   P+ IT++T+ D   K G +D A  L   M D  +
Sbjct: 382 KK----MLKEAREMLDDIGKRGLA--PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGV 435

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY  LI GFC   +  EA+ L  EM   G++ ++VT+N++++ LCK G+  +A R
Sbjct: 436 CPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVR 495

Query: 255 LLE---LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           LL+   LM + G R +   YN L+ GFC  G++  A  L   M   G + +  +Y I   
Sbjct: 496 LLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDI--- 552

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTV 338
                        L  EM+ KG  P +
Sbjct: 553 -------------LRDEMMEKGFIPDI 566



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 126/232 (54%), Gaps = 13/232 (5%)

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
           +L A  C P       ++  L + G   V  ++++EM       GV    + +T+  + +
Sbjct: 191 RLSALSCNP-------MLVSLVKEGRIGVVESVYKEMIRR--RIGV----NVVTFDVVIN 237

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           GLCK G   KA ++   MK    +P V+TY ++I G+C A    +A  L  EM+ + + P
Sbjct: 238 GLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHP 297

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N +TFN++++  C++  +  A ++ E M + G++P+   YN+L++G C  G+++ A  L 
Sbjct: 298 NEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQ 357

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M   G   +V +Y  LING+CK K ++ A  +  ++  +G+ P V+T+NT
Sbjct: 358 DKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 54/112 (48%)

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N +  ++++    KNG+MD A    +     G R  A   N ++      GR+   + ++
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVY 217

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M       +V ++ ++ING CK  + + A  +  +M + G  P+V+TYNT
Sbjct: 218 KEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNT 269


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 166/308 (53%), Gaps = 6/308 (1%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            LSL + +   G  P + TYN  I   CK+GR+S     L  +L +   PD V++ +LI 
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIY 382

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
           G C    +M+A  LF +LR+    P + TY TL++GLCR G   VA  L  EM N     
Sbjct: 383 GYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG--- 439

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
                PD +TY+ + +G CK G +  A+E F +M  E +  D   Y + I G     D +
Sbjct: 440 ---IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTS 496

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
            A  L  EM+ +G  P+++ +NV+++ LCK G ++EAS LL+ M+  GV PD   Y +++
Sbjct: 497 RAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSII 556

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
                 GR+ + +E+F  M S G    V +Y +LI+G+     +E A   +SEM  KGI 
Sbjct: 557 HAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGIL 616

Query: 336 PTVVTYNT 343
           P V+TYN+
Sbjct: 617 PNVITYNS 624



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 168/330 (50%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N L     +  +      LF  L SI LFP + TYN L++  C+ G +     +
Sbjct: 372 PDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL 431

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD VT+T L+ G C    +  A   F ++   G + D + Y T I G  +
Sbjct: 432 KVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELK 491

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G T  A +L EEM A G         PD I Y+ + DGLCK G +++A EL  KM  + 
Sbjct: 492 LGDTSRAFSLQEEMLAKG-------FPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTYTS+I          + + +F EM+ +G+ P+VVT+ V+++     G+++ A 
Sbjct: 545 VIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAF 604

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
                M + G+ P+   YN+L++G C   R+++A   F  M   G   + +SY ILIN  
Sbjct: 605 IYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINEN 664

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C     + ALSLY +ML +G++P   T++ 
Sbjct: 665 CNMGNWQEALSLYKQMLDRGVQPDSCTHSA 694



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 168/342 (49%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             +FD M++   SP  V + N +   L         + +++ +   G+ P + TYN L++
Sbjct: 184 LSVFDKMIKSRLSPD-VKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLD 242

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK G+V  G  +L  + R    P+ VT+  LI GL  +    +A  L  ++   G K 
Sbjct: 243 SYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV 302

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
             +TY  LI G    G    AL+L EEM            P   TY++   GLCK G + 
Sbjct: 303 SAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG------ASPTVATYNSFIYGLCKLGRMS 356

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A +    M   N+ PDVV+Y +LI G+C   +  +A  LF E+    + P +VT+N ++
Sbjct: 357 DAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLL 416

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LC+ G+++ A +L   MI  G+ PD   Y  L++G C  G ++ A+E F  M   G  
Sbjct: 417 DGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLE 476

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            D ++Y   I G  K  +   A SL  EML+KG  P ++ YN
Sbjct: 477 LDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYN 518



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 158/328 (48%), Gaps = 10/328 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD +  ++  P  + ++N L   L +    +    L   + + G+ PD+ TY IL+N
Sbjct: 394 FLLFDELRSIYLFPT-IVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN 452

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CKMG +S        +L      D+  + + I G         A +L  ++ A G  P
Sbjct: 453 GSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPP 512

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+  Y  +++GLC+ G+   A  L ++M +     GV+  PD +TY++I     + G + 
Sbjct: 513 DLIIYNVVVDGLCKLGNLEEASELLQKMVSD----GVI--PDYVTYTSIIHAHLENGRLR 566

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           K +E+F +M  + + P VVTYT LI G         A   F EM ++G+ PNV+T+N ++
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N LCK  +MD+A      M++ G+ P+   Y  L++  C  G    A  L+  M   G  
Sbjct: 627 NGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQ 686

Query: 301 RDVFSYGILINGY---CKNKEIEGALSL 325
            D  ++  L+      CK + + G  ++
Sbjct: 687 PDSCTHSALLKQLGKDCKLQAVHGTSTM 714



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 145/286 (50%), Gaps = 6/286 (2%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
           ++LI  + K   V     V  ++++S  +PD      +++ L  +  + +A  ++  +  
Sbjct: 168 DLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE 227

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           FG KP + TY TL++  C+ G     L+L  EM          C P+ +TY+ + +GL K
Sbjct: 228 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRG------CAPNDVTYNVLINGLSK 281

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           +G  ++AK L  +M    +     TY  LI G+       EA  L  EM+ +G  P V T
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVAT 341

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N  +  LCK G+M +A + L  M+   + PD   YNTL+ G+C  G + +A  LF  + 
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR 401

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           S      + +Y  L++G C+  E+E A  L  EM+++GI P +VTY
Sbjct: 402 SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTY 447



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 125/251 (49%), Gaps = 6/251 (2%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LI     +S + +  ++F K+      PDV     ++  L        A+ ++  M    
Sbjct: 170 LIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTM---- 225

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
           GEFG+  KP  +TY+T+ D  CK G V +  +L  +M+     P+ VTY  LI G     
Sbjct: 226 GEFGI--KPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKG 283

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           ++ +AK L  EM+  G++ +  T+N ++      G + EA  L E M+  G  P  + YN
Sbjct: 284 EFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYN 343

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           + + G C  GR++ A +    M +N  + DV SY  LI GYC+   +  A  L+ E+ S 
Sbjct: 344 SFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI 403

Query: 333 GIRPTVVTYNT 343
            + PT+VTYNT
Sbjct: 404 YLFPTIVTYNT 414


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 169/306 (55%), Gaps = 7/306 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF+ +   G+ PD  +Y +++  +CK+G +      L  +L   F  D  TFT +I    
Sbjct: 192 LFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFS 251

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
            +     A   F +L   G +P++  +T +I GLC+ G    A  + EEM  G G     
Sbjct: 252 GKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMV-GKG----- 305

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNEA 217
            KP+  T++++ DGLCK+G+ +KA  LFLK+ + EN  P+V+TYT++I G+C  +  N A
Sbjct: 306 WKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRA 365

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           + L   M +QG+ PN  T+  +++  CK G  + A  L+ LM   G  P+   YN +++G
Sbjct: 366 EMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNG 425

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  GRV  A ++      NG   D F+Y IL++ +CK + I  AL+L+++ML  GI+P 
Sbjct: 426 LCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPD 485

Query: 338 VVTYNT 343
           + +Y T
Sbjct: 486 IHSYTT 491



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 158/297 (53%), Gaps = 5/297 (1%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G   D  T+ ++I+ F   G  +       R++     P+ + FT +I+GLC    I +A
Sbjct: 235 GFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQA 294

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +  ++   G KP+V+T+T+LI+GLC+ G T  A  LF ++           KP+ +TY
Sbjct: 295 FEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENH-----KPNVLTY 349

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + +  G C+E  +++A+ L  +MK++ + P+  TYT+LI G C A ++  A  L   M  
Sbjct: 350 TAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSS 409

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G  PN+ T+N I+N LCK G++ EA ++LE   Q G++PD   YN LM   C    + +
Sbjct: 410 EGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQ 469

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A  LF  M   G   D+ SY  LI  +C+   ++ +   + E +  GI PT  TY +
Sbjct: 470 ALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTS 526



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 167/327 (51%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  +   L K         + + +   G  P++YT+  LI+  CK G     F +
Sbjct: 273 PNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRL 332

Query: 75  LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
             +++RS    P+ +T+T++I G C E ++  A  L ++++  G  P+  TYTTLI+G C
Sbjct: 333 FLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHC 392

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+   A +L   M++          P+  TY+ I +GLCK G V +A ++        
Sbjct: 393 KAGNFERAYDLMNLMSSEG------FSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNG 446

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TY  L+   C   +  +A  LF +M+  G+QP++ ++  ++   C+  +M E+ 
Sbjct: 447 LKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESE 506

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
              E  ++IG+ P    Y +++ G+C  G +  A + F  +  +GC  D  +YG +I+G 
Sbjct: 507 MFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGL 566

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
           CK  + + A SLY  M+ KG+ P  VT
Sbjct: 567 CKQSKRDEARSLYDSMIEKGLVPCEVT 593



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 130/279 (46%), Gaps = 6/279 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ++R     P V ++  +     +    +    L  R+   GL P+  TY  LI+
Sbjct: 330 FRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLID 389

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G     + ++  +    F+P+  T+ +++ GLC   R+ EA  +       G KP
Sbjct: 390 GHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKP 449

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D FTY  L++  C+  +   AL LF +M        +  +PD  +Y+T+    C+E  + 
Sbjct: 450 DKFTYNILMSEHCKQENIRQALALFNKM------LKIGIQPDIHSYTTLIAVFCRENRMK 503

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +++  F +     I P   TYTS+I G+C   +   A   F  + D G  P+ +T+  I+
Sbjct: 504 ESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAII 563

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           + LCK  K DEA  L + MI+ G+ P      TL   +C
Sbjct: 564 SGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYC 602



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K  +++    L   ++S G  P+L TYN ++N  CK GRV   + +
Sbjct: 379 PNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKM 438

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L    ++   PD  T+  L+   C +  I +A ALF K+   G +PD+ +YTTLI   CR
Sbjct: 439 LEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCR 498

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 +   FEE        G++  P   TY+++  G C+EG +  A + F ++ D   
Sbjct: 499 ENRMKESEMFFEEAV----RIGII--PTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGC 552

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
            PD +TY ++I G C  +  +EA+ L+  M+++G+ P  VT   +  E CK
Sbjct: 553 APDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYCK 603



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 7/252 (2%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           +++      R+ EA  +  ++   G  P+  T   +I      G    A  LFEEM    
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVR- 199

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
              GV  +PD+I+Y  +    CK G + +A +    M +     D  T+T +I  F    
Sbjct: 200 ---GV--QPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKG 254

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
               A   F  ++D G++PN++ F  ++  LCK G + +A  +LE M+  G +P+   + 
Sbjct: 255 YTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHT 314

Query: 273 TLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           +L+DG C  G   +A  LF+ +  S     +V +Y  +I+GYC+  ++  A  L S M  
Sbjct: 315 SLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKE 374

Query: 332 KGIRPTVVTYNT 343
           +G+ P   TY T
Sbjct: 375 QGLVPNTNTYTT 386


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 179/328 (54%), Gaps = 10/328 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   + N +  CLA+ +  +    LF++L +    P+++T+NI+I+  CK G ++    
Sbjct: 160 PPNTRTCNHILLCLARERSSELAWRLFEQLPA----PNVFTFNIMIDFLCKEGDLAEARA 215

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R+     +PD VT+ SLI G      + E   L  ++R  GC+PDV TY  L+N  C
Sbjct: 216 LLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFC 275

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A + F EM       GV+   + +T+ST  D  CK G V +A +LF +M+ + 
Sbjct: 276 KFGRMERAYSYFAEMKRE----GVMA--NVVTFSTFVDAFCKNGMVREAMKLFAQMRMKG 329

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+ VTYT L+ G C A   ++A  L  EM+ QGV  NVVT+ V+++ LCK GK+ EA 
Sbjct: 330 MKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAE 389

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +  LM + G+R +  +Y TL+ G  +     RA  L   M+  G   DV  YG LI G 
Sbjct: 390 DVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGL 449

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           C  ++++ A SL ++M   G++P  V Y
Sbjct: 450 CNLQKLDEAKSLLNKMDECGLKPNNVIY 477



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 170/355 (47%), Gaps = 29/355 (8%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +F+       KN      + LF ++   G+ P+  TY  L++  CK GR+    V+  
Sbjct: 299 VVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTN 358

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +++     + VT+T L+ GLC E ++ EA  +F  +   G + +   YTTLI+G     
Sbjct: 359 EMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYK 418

Query: 137 HTIVALNLFEEMANGNGEFGV---------VC--------------------KPDAITYS 167
           ++  AL+L  EM +   E  V         +C                    KP+ + Y+
Sbjct: 419 NSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYT 478

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
            I D   K     +A  L  KM D    P++VTY +L+ G C A   +EA   F +M+D 
Sbjct: 479 NIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDL 538

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G++PNV  +  +++ LCKNG++D+A  LL+ MI  G+  D  V  +LMDG    G +  A
Sbjct: 539 GLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDA 598

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             L   M ++G   D++ Y   + G+C    I+ A  + SEM+  GI P  V YN
Sbjct: 599 FALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYN 653



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 155/331 (46%), Gaps = 16/331 (4%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLN--SIGLFPDLYTY----NILINCFCKMGRVSPGF 72
           S ++L   LA   H     SL   L+  ++ L P         + L++     G +    
Sbjct: 89  SRSLLSRLLAPGHHPHLAASLVDLLHRAALALGPRRSALPSVVDTLLSLLADRGLLDDAV 148

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           + L R+      P+  T   ++  L  E     A  LF +L A    P+VFT+  +I+ L
Sbjct: 149 LALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQLPA----PNVFTFNIMIDFL 204

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A  L   M        + C PD +TY+++ DG  K G +++ ++L  +M+  
Sbjct: 205 CKEGDLAEARALLARMK------AIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGC 258

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              PDVVTY +L+  FC       A   F EM  +GV  NVVTF+  ++  CKNG + EA
Sbjct: 259 GCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREA 318

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +L   M   G++P+   Y  L+DG C  GR++ A  L   M   G   +V +Y +L++G
Sbjct: 319 MKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDG 378

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            CK  ++  A  ++  M   GIR   + Y T
Sbjct: 379 LCKEGKVAEAEDVFRLMERAGIRANELLYTT 409



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 154/359 (42%), Gaps = 41/359 (11%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +RM    P   ++  L     K    D  L L   +   G+  ++ TY +L++  CK G+
Sbjct: 325 MRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGK 384

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKG------------------------------- 96
           V+    V   + R+    + + +T+LI G                               
Sbjct: 385 VAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGA 444

Query: 97  ----LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
               LC   ++ EA +L  K+   G KP+   YT +++   +      A+ L ++M +  
Sbjct: 445 LIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSG 504

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                  +P+ +TY  + DGLCK G +D+A   F KM D  + P+V  YT+L+ G C   
Sbjct: 505 ------FRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNG 558

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             ++A  L  EM+D+G+  + V    +M+   K G + +A  L   MI  G++ D   Y 
Sbjct: 559 RLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYT 618

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             + GFC    +  A+E+   M  NG   D   Y  LIN   K   +E A  L +EM S
Sbjct: 619 CFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEMES 677


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 166/303 (54%), Gaps = 6/303 (1%)

Query: 41  KRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100
           K L   GL PDL TY +LI   C+MG +     +   +L S F  + + ++ L+  LC  
Sbjct: 280 KMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKR 339

Query: 101 SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160
            ++ EA  L  ++ A   +PD+ TY+ LI+GLC+ G    A+ L++EM      F  +  
Sbjct: 340 GQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMC-----FNRIF- 393

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P++  +S I  GLC++G +  A+  F  +   N+ PDV  Y  +I G+    D  EA  L
Sbjct: 394 PNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRL 453

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           +  + D+ + P++VTFN ++   CKN K+ EA RLLE +   G+ P A  Y TLM+ +C 
Sbjct: 454 YKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCE 513

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G +N+  EL + M        V +Y ++I G CK +++E ++ L  +M +KG+ P  +T
Sbjct: 514 EGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQIT 573

Query: 341 YNT 343
           YNT
Sbjct: 574 YNT 576



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 169/356 (47%), Gaps = 29/356 (8%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +++L   L K    D  L L   + +  L PDL TY+ILI+  CK G+V     +  
Sbjct: 326 VILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYK 385

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +  +   P++   + ++KGLC +  + +A   F  L     +PDV  Y  +I+G  + G
Sbjct: 386 EMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLG 445

Query: 137 HTIVALNLFEEMANGNGEFGVV---------CK--------------------PDAITYS 167
               A+ L++ + +      +V         CK                    P A+TY+
Sbjct: 446 DVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYT 505

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           T+ +  C+EG ++K  EL L+M  ++I P VVTYT +I+G C      E+  L  +M  +
Sbjct: 506 TLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAK 565

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G+ P+ +T+N I+   CK   M +A  LL+ M+   + P  + YN L+DG C  G V  A
Sbjct: 566 GLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDA 625

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             + VS++         +Y  +I  +C   + + A+ ++ +M+ KG   ++  Y+ 
Sbjct: 626 DRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSA 681



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 168/344 (48%), Gaps = 12/344 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I   ML      P + ++ +L     +  + +  L L + L S G   ++  Y++L++  
Sbjct: 277 IIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSL 336

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL---RAFGCK 119
           CK G+V     +L  +  +   PD VT++ LI GLC + ++ +A  L+ ++   R F   
Sbjct: 337 CKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIF--- 393

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+ F ++ ++ GLC  G    A   F+ +   N       +PD   Y+ + DG  K G V
Sbjct: 394 PNSFAHSGILKGLCEKGMLSDARMYFDSLIMSN------LRPDVTLYNIMIDGYVKLGDV 447

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           ++A  L+ +++D+ I P +VT+ SLI GFC      EA+ L   +   G++P+ VT+  +
Sbjct: 448 EEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTL 507

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           MN  C+ G +++   LL  M    + P    Y  ++ G C   ++  + +L   M + G 
Sbjct: 508 MNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGL 567

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             D  +Y  +I  +CK K++  A  L  +ML   + PT  TYN 
Sbjct: 568 APDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNV 611



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 149/297 (50%), Gaps = 6/297 (2%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F  L    L PD+  YNI+I+ + K+G V     +  R+     TP  VTF SLI G C 
Sbjct: 419 FDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCK 478

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             +++EA  L   ++  G +P   TYTTL+N  C  G+      L  EM   + E     
Sbjct: 479 NRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIE----- 533

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            P  +TY+ +  GLCK+  ++++ +L   M+ + + PD +TY ++I+ FC A D  +A  
Sbjct: 534 -PTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFE 592

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  +M+   ++P   T+NV+++ LC+ G +++A R+L  +    +      Y T++   C
Sbjct: 593 LLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHC 652

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           + G   RA ++F  M   G    +  Y  +IN  CK   I  A   +  MLS G+ P
Sbjct: 653 VKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSP 709



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 145/295 (49%), Gaps = 6/295 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR     P + +FN L     KN+       L + +   GL P   TY  L+N +C+ G 
Sbjct: 457 LRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGN 516

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           ++    +L  +      P  VT+T +IKGLC + ++ E+  L   +RA G  PD  TY T
Sbjct: 517 INKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNT 576

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I   C+      A  L ++M   N E      P   TY+ + DGLC+ G V+ A  + +
Sbjct: 577 IIQCFCKAKDMRKAFELLDDMLIHNLE------PTPATYNVLIDGLCRYGDVEDADRVLV 630

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            ++D NIN   V YT++I+  C   D   A  +F +M+++G + ++  ++ ++N LCK  
Sbjct: 631 SLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRC 690

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            ++EA     +M+  GV PD  ++  +++ F   G V+   EL   M   G + D
Sbjct: 691 LINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLLHD 745



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 169/365 (46%), Gaps = 45/365 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L   +H D +  ++  +   G      T +I+++  C   R     + 
Sbjct: 116 PSIQTYNSLLYNL---RHTDIMWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDAVLF 172

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +     F P  V+F +++   C       A + F  +  +G  PD ++Y  LI+GL  
Sbjct: 173 LRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIV 232

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDEN 193
            G    AL L  +M           +PD +TY  +  G    G +  A+E+  KM  DE 
Sbjct: 233 AGSMEEALELTNDMEKQG------LQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEG 286

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD+VTYT LI G C   +  EA  L  +++  G Q NV+ ++V+++ LCK G++DEA 
Sbjct: 287 LKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEAL 346

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM----------ESNGCMR-- 301
           +LL  M    ++PD   Y+ L+ G C  G+V +A +L+  M            +G ++  
Sbjct: 347 QLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGL 406

Query: 302 -----------------------DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
                                  DV  Y I+I+GY K  ++E A+ LY  +  K I P++
Sbjct: 407 CEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSI 466

Query: 339 VTYNT 343
           VT+N+
Sbjct: 467 VTFNS 471



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 120/282 (42%), Gaps = 51/282 (18%)

Query: 64  KMGRVSPGFV--VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +  RVS   V  VL R  R  F    +    +++   A   + +A  +  K++    +P 
Sbjct: 60  QHSRVSRFLVSHVLARKRR--FKDLRLVLDQMLQEEVASRMVHDALFVLVKMKEQNLRPS 117

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG-FVD 180
           + TY +L+  L    HT +  +++ ++ +            A T S I DGLC +  F D
Sbjct: 118 IQTYNSLLYNL---RHTDIMWDVYNDIKDSG------TPQSARTSSIIVDGLCGQSRFRD 168

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
               LFL+                       ND  E              P+VV+FN IM
Sbjct: 169 AV--LFLR----------------------QNDGKE------------FAPSVVSFNTIM 192

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G  D A     +M++ G+ PD   YN L+ G  + G +  A EL   ME  G  
Sbjct: 193 SRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQ 252

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLS-KGIRPTVVTY 341
            D+ +Y I+  G+     + GA  +  +ML+ +G++P +VTY
Sbjct: 253 PDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTY 294


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 171/340 (50%), Gaps = 10/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M     SPP V ++  +          +  + L   + + GL  +   Y  +I   C
Sbjct: 278 FDEM----SSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLC 333

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G+VS    VL  +       DAV FT++I G C++  +  A  LF +++  G   D  
Sbjct: 334 NKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRV 393

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           T+T LINGLCR G    A  + +EM +   +       D +TY+ + DG CK G + +A 
Sbjct: 394 THTALINGLCRAGELKEADRVLQEMVDKGLDV------DVVTYTVLIDGYCKRGNMVEAF 447

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +  +M    + P+VVTYT+L  G C   D   A  L  EM ++G++ NV T+N ++N L
Sbjct: 448 RVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGL 507

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G +++A R++  M   G R D   Y TL+D  C +G  +RA  +   M   G    +
Sbjct: 508 CKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSI 567

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y +L+NG+C +  +EG   L   ML K +RP VVTYN+
Sbjct: 568 ATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNS 607



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 166/305 (54%), Gaps = 6/305 (1%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF+ +   GL  D  T+  LIN  C+ G +     VL  ++      D VT+T LI G C
Sbjct: 379 LFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYC 438

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
               ++EA  +  ++      P+V TYT L +GLC+ G    A  L  EM N   E  V 
Sbjct: 439 KRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNV- 497

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
                 TY+++ +GLCK G +++A  +  +M+      DV TYT+LI   C + +++ A 
Sbjct: 498 -----YTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAH 552

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            +  EM+D+G++P++ T+NV+MN  C +G+++   +LLE M++  VRP+   YN+LM  +
Sbjct: 553 NMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQY 612

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C+   +    E++  M S     +  +Y ILI G+CK + ++ AL  + EM+ KG+R T 
Sbjct: 613 CIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTA 672

Query: 339 VTYNT 343
            +Y+ 
Sbjct: 673 SSYSA 677



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 156/314 (49%), Gaps = 13/314 (4%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
           K  D VL   + +   GL  D+ TY +LI+ +CK G +   F V   ++     P+ VT+
Sbjct: 409 KEADRVL---QEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTY 465

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-A 149
           T+L  GLC +  +  A  L  ++   G + +V+TY +LINGLC+ G+   A+ +  EM A
Sbjct: 466 TALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEA 525

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
            G+       + D  TY+T+ D LCK G  D+A  +  +M D+ I P + TY  L+ GFC
Sbjct: 526 AGH-------RTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFC 578

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            +      K L   M+++ V+PNVVT+N +M + C +  M   + + + M    V P+ +
Sbjct: 579 MSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNEN 638

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            YN L+ G C    +  A      M   G      SY  LI    K K+   A   + +M
Sbjct: 639 TYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKM 698

Query: 330 LSKGI--RPTVVTY 341
            ++G+   P V ++
Sbjct: 699 RNEGLTAEPDVYSF 712



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 139/281 (49%), Gaps = 6/281 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P++ TY  L +  CK G V     +L  +       +  T+ SLI GLC    + +A  +
Sbjct: 460 PNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRI 519

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
            T++ A G + DV+TYTTLI+ LC++G    A N+ +EM +         KP   TY+ +
Sbjct: 520 MTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKG------IKPSIATYNVL 573

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +G C  G V+  K+L   M ++N+ P+VVTY SL++ +C   +      ++  M  Q V
Sbjct: 574 MNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEV 633

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PN  T+N+++   CK   M EA    + MI+ G+R  AS Y+ L+       + + A+ 
Sbjct: 634 APNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARV 693

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
            F  M + G   +   Y   ++       +E  ++L  E++
Sbjct: 694 FFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDELV 734



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 103/253 (40%), Gaps = 31/253 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K         L   + + GL  ++YTYN LIN  CK G +     +
Sbjct: 460 PNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRI 519

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  +    D  T+T+LI  LC       A  +  ++   G KP + TY  L+NG C 
Sbjct: 520 MTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCM 579

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC-----------------------------KPDAIT 165
           +G       L E M   N    VV                               P+  T
Sbjct: 580 SGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENT 639

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  G CK   + +A     +M ++ +     +Y++LIR       ++EA+  F +M 
Sbjct: 640 YNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMR 699

Query: 226 DQGV--QPNVVTF 236
           ++G+  +P+V +F
Sbjct: 700 NEGLTAEPDVYSF 712


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 179/344 (52%), Gaps = 7/344 (2%)

Query: 1   FCIFDYMLRMHPSPPPVC-SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
             +   M R   +PPP   S+N++   L ++      L +F  +  +G+ P+  TYN +I
Sbjct: 177 LAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMI 236

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +   K G +  GF +  ++L     P+ VT+  L+ GLC   R+ E  AL  ++ +    
Sbjct: 237 DGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSML 296

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD FTY+ L +GL RTG +   L+LF E        G      A T S + +GLCK+G V
Sbjct: 297 PDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLG------AYTCSILLNGLCKDGKV 350

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            KAK++F  +    + P  V Y +LI G+C   D   A C+F +M  + ++P+ +T+N +
Sbjct: 351 AKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNAL 410

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +N LCK   + +A  L+  M + GV P    +NTL+D +   G++ +   +   M+  G 
Sbjct: 411 INGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             DV S+G ++  +CKN +I  A+++  +M+ K + P    YN+
Sbjct: 471 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 514



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 182/344 (52%), Gaps = 9/344 (2%)

Query: 1   FCIFDYMLRMHPSPPP-VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           F + D ML  H  P P V ++N+L   L +    D   +L   + S  + PD +TY+IL 
Sbjct: 249 FRLRDQML--HDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILF 306

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +   + G       +    L+      A T + L+ GLC + ++ +A  +F  L   G  
Sbjct: 307 DGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLV 366

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P    Y TLING C+      A  +FE+M + +       +PD ITY+ + +GLCK   V
Sbjct: 367 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH------IRPDHITYNALINGLCKLEMV 420

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            KA++L ++M+   ++P V T+ +LI  +  A    +   +  +M  +G++ +V++F  +
Sbjct: 421 TKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSV 480

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   CKNGK+ EA  +L+ MI   V P+A VYN+++D +  +G   +A  L   M+++G 
Sbjct: 481 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGV 540

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              + +Y +L+ G C++ +I+ A  L   + ++G+RP VV+YNT
Sbjct: 541 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNT 584



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 164/331 (49%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S N+L   L     +  V + F  L + G  PD + +N ++      G +     +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 75  LGRILRS--CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           L R+ RS     PDA ++  +I GL    +  +A  +F ++   G  P+  TY T+I+G 
Sbjct: 180 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGH 239

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            + G       L ++M +         KP+ +TY+ +  GLC+ G +D+ + L  +M   
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGP------KPNVVTYNVLLSGLCRTGRMDETRALMDEMASH 293

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           ++ PD  TY+ L  G     +      LF E + +GV     T ++++N LCK+GK+ +A
Sbjct: 294 SMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKA 353

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            ++ E+++  G+ P   +YNTL++G+C    +  A  +F  M+S     D  +Y  LING
Sbjct: 354 KQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALING 413

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            CK + +  A  L  EM   G+ P+V T+NT
Sbjct: 414 LCKLEMVTKAEDLVMEMEKSGVDPSVETFNT 444



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 162/360 (45%), Gaps = 29/360 (8%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   +++ILF  L +     T+LSLF      G+    YT +IL+N  CK G+V+ 
Sbjct: 293 HSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAK 352

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              V   ++ +   P  V + +LI G C    +  A  +F ++++   +PD  TY  LIN
Sbjct: 353 AKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 412

Query: 131 GLCRTGHTIVALNLFEEMANGN---------------GEFGVV--------------CKP 161
           GLC+      A +L  EM                   G  G +               K 
Sbjct: 413 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 472

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           D I++ ++    CK G + +A  +   M  +++ P+   Y S+I  +  + D  +A  L 
Sbjct: 473 DVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLV 532

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +M + GV  ++VT+N+++  LC++ ++DEA  L+  +   G+RPD   YNT++   C  
Sbjct: 533 EKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNK 592

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G  ++A EL   M   G    + +   L++       +     LY +ML K + P+   Y
Sbjct: 593 GDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIY 652



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 157/320 (49%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N L     + +       +F+++ S  + PD  TYN LIN  CK+  V+    +
Sbjct: 367 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL 426

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + +S   P   TF +LI       ++ +   + + ++  G K DV ++ +++   C+
Sbjct: 427 VMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCK 486

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ + ++M   +        P+A  Y++I D   + G  ++A  L  KMK+  +
Sbjct: 487 NGKIPEAVAILDDMIYKD------VAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGV 540

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +  +VTY  L++G C ++  +EA+ L   + +QG++P+VV++N I++  C  G  D+A  
Sbjct: 541 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 600

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G+RP     +TL+      GRV+  + L+  M           YGI+++ Y 
Sbjct: 601 LLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYV 660

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           + +      SL  EM  KGI
Sbjct: 661 RCENDSKVASLKKEMSEKGI 680



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 144/302 (47%), Gaps = 7/302 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           FCIF+ M   H  P  + ++N L   L K +       L   +   G+ P + T+N LI+
Sbjct: 389 FCIFEQMKSRHIRPDHI-TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLID 447

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +   G++   F VL  + +     D ++F S++K  C   +I EA A+   +      P
Sbjct: 448 AYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAP 507

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +   Y ++I+    +G T  AL L E+M N      +V      TY+ +  GLC+   +D
Sbjct: 508 NAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIV------TYNLLLKGLCRSSQID 561

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A+EL   ++++ + PDVV+Y ++I   C   D ++A  L  EM   G++P + T + ++
Sbjct: 562 EAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLV 621

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L   G++ +   L + M+   V P +S+Y  ++D +      ++   L   M   G  
Sbjct: 622 SALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 681

Query: 301 RD 302
            D
Sbjct: 682 FD 683


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 175/327 (53%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L K         L + +   G  P++YT+  LI+  CK G     F +
Sbjct: 292 PNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRL 351

Query: 75  LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
             +++RS  + P+  T+T++I G C E ++  A  L ++++  G  P+  TYTTLI+G C
Sbjct: 352 FLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHC 411

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+ + A  L + M    G+ G    P+  TY+ I DGLCK+G +D+A  L  K+    
Sbjct: 412 KVGNFVRAYELMDLM----GKEGF--SPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG 465

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  D VTYT L+   C   D N +   F +M+  G  P++ ++  +++  C+  +M E+ 
Sbjct: 466 LQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESE 525

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RL E  + +G+ P    Y +++ G+C  G  + A +LF  M ++GC  D  +YG LI+G 
Sbjct: 526 RLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGL 585

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
           CK  +++ A +LY  M+ KG+ P  VT
Sbjct: 586 CKESKLDDARNLYDAMMDKGLSPCEVT 612



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 170/311 (54%), Gaps = 8/311 (2%)

Query: 36  VLSLFKRLNSI---GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           VL   K LN++   G   D  T  ++I+ FC+ G V+       +++     P+ + FT+
Sbjct: 240 VLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTA 299

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LI GLC +  I +A  L  ++   G KP+V+T+TTLI+GLC+ G T  A  LF ++   +
Sbjct: 300 LINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSD 359

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
           G      KP+  TY+ + +G CKE  +++A+ L  +M+++ + P+  TYT+LI G C   
Sbjct: 360 GY-----KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVG 414

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           ++  A  L   M  +G  PN+ T+N I++ LCK G +DEA RLL  +   G++ D   Y 
Sbjct: 415 NFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYT 474

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            LM   C     NR+   F  M   G   D+ SY  LI+ +C+ K+++ +  L+ E +S 
Sbjct: 475 ILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSL 534

Query: 333 GIRPTVVTYNT 343
           G+ PT  TY +
Sbjct: 535 GLIPTKKTYTS 545



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 159/307 (51%), Gaps = 7/307 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           ++F  +   G+ PD  ++ +++   C MGRV      L  ++   F  D  T T +I   
Sbjct: 210 NMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAF 269

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C +  +      F K+   G  P+V  +T LINGLC+ G    A  L EEM         
Sbjct: 270 CQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGW---- 325

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNE 216
             KP+  T++T+ DGLCK+G+ +KA  LFLK+ + +   P+V TYT++I G+C  +  N 
Sbjct: 326 --KPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNR 383

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A+ L   M +QG+ PN  T+  +++  CK G    A  L++LM + G  P+   YN ++D
Sbjct: 384 AEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C  G ++ A  L   +  +G   D  +Y IL++ +C+  +   +L  +++ML  G  P
Sbjct: 444 GLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTP 503

Query: 337 TVVTYNT 343
            + +Y T
Sbjct: 504 DIHSYTT 510



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 156/341 (45%), Gaps = 8/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILI 59
           F + + M+R     P V +   L   L K    +    LF +L  S G  P+++TY  +I
Sbjct: 314 FELLEEMVR-RGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMI 372

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           N +CK  +++   ++L R+      P+  T+T+LI G C     + A  L   +   G  
Sbjct: 373 NGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFS 432

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+++TY  +I+GLC+ G    A  L  +++          + D +TY+ +    C++   
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG------LQADGVTYTILMSVHCRQADT 486

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +++   F KM      PD+ +YT+LI  FC      E++ LF E +  G+ P   T+  +
Sbjct: 487 NRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSM 546

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   C+ G    A +L + M   G  PD+  Y  L+ G C   +++ A+ L+ +M   G 
Sbjct: 547 ICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
                +   L   YCK  +   A+++   +  +    TV T
Sbjct: 607 SPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNT 647



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 154/332 (46%), Gaps = 9/332 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ++R     P V ++  +     K    +    L  R+   GL P+  TY  LI+
Sbjct: 349 FRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLID 408

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+G     + ++  + +  F+P+  T+ ++I GLC +  + EA  L  K+   G + 
Sbjct: 409 GHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQA 468

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT L++  CR   T  +L  F +M        V   PD  +Y+T+    C++  + 
Sbjct: 469 DGVTYTILMSVHCRQADTNRSLVFFNKM------LKVGFTPDIHSYTTLISXFCRQKQMK 522

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +++ LF +     + P   TYTS+I G+C   + + A  LF  M + G  P+ +T+  ++
Sbjct: 523 ESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALI 582

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK  K+D+A  L + M+  G+ P      TL   +C     + A  +   +E    +
Sbjct: 583 SGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWI 642

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           R V     L+   C   +++ A   + ++L K
Sbjct: 643 RTV---NTLVRKLCSEGKLDMAALFFHKLLDK 671



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 125/275 (45%), Gaps = 38/275 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L K    D    L  +++  GL  D  TY IL++  C+    +   V 
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVF 492

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L+  FTPD  ++T+LI   C + ++ E+  LF +  + G  P   TYT++I G CR
Sbjct: 493 FNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCR 552

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+T +A+ LF+ M+N        C PD+ITY  +  GLCKE  +D A+ L+  M D+ +
Sbjct: 553 YGNTSLAVKLFQRMSNHG------CAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606

Query: 195 NP--------------------------------DVVTYTSLIRGFCYANDWNEAKCLFI 222
           +P                                 + T  +L+R  C     + A   F 
Sbjct: 607 SPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFFH 666

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           +++D+    N VT    MN+  ++ K    S L E
Sbjct: 667 KLLDKEPNVNRVTLLGFMNKCYESNKYGLVSELSE 701



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           ++       ++ EA  +  +++  G      T   +++     G   +A N+F EM    
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMC--- 216

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
            + GV   PD +++  +    C  G V +A++    M +     D  T T +I  FC   
Sbjct: 217 -QRGV--SPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKG 273

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             N     F +M++ G+ PNV+ F  ++N LCK G + +A  LLE M++ G +P+   + 
Sbjct: 274 YVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHT 333

Query: 273 TLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           TL+DG C  G   +A  LF+ +  S+G   +V +Y  +INGYCK  ++  A  L S M  
Sbjct: 334 TLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQE 393

Query: 332 KGIRPTVVTYNT 343
           +G+ P   TY T
Sbjct: 394 QGLVPNTNTYTT 405


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 161/295 (54%), Gaps = 8/295 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD++ YN +I+ FCK+ R+     VL R+    F PD VT+  +I  LC   ++  A  +
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYST 168
             +L    C P V TYT LI      G    A+ L EEM A G         PD  TY+ 
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG-------LLPDMYTYNA 247

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           I  G+CKEG V++A EL   +  +   PDV++Y  L+R F     W+E + L  EM  +G
Sbjct: 248 IIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 307

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
            +PN VT++++++ LC+ G++DEA  +L++MI+  + PD   Y+ L+   C  GR++ A 
Sbjct: 308 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAI 367

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +   M SNGC+ D+ +Y  ++   CKN     AL +++++   G  P V +YNT
Sbjct: 368 GIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNT 422



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 159/328 (48%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NI+ G L   +     L +  +L      P + TY ILI      G ++    +
Sbjct: 170 PDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKL 229

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD  T+ ++I+G+C E  +  AA L T L + GCKPDV +Y  L+     
Sbjct: 230 LEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLN 289

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L  EM      F   C+P+ +TYS +   LC+ G +D+A  +   M ++ +
Sbjct: 290 QGKWDEGEKLVAEM------FSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKEL 343

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  +Y  LI   C     + A  +   M+  G  P++V +N I+  LCKNG  ++A  
Sbjct: 344 TPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 403

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   +  +G  P+ S YNT++      G  +RA  +  +M S G   D  +Y  LI+  C
Sbjct: 404 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLC 463

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  +E A+ L  +M   G RPTV++YN
Sbjct: 464 RDGLVEEAIGLLDDMEQSGFRPTVISYN 491



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 167/337 (49%), Gaps = 7/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +L  H + P V ++N +     K    +    +  R+ + G  PD+ TYNI+I   C   
Sbjct: 128 ILESH-TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 186

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++     VL ++L     P  +T+T LI+    E  I EA  L  ++ A G  PD++TY 
Sbjct: 187 KLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYN 246

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            +I G+C+ G    A  L   + +        CKPD I+Y+ +      +G  D+ ++L 
Sbjct: 247 AIIRGMCKEGMVERAAELITSLTSKG------CKPDVISYNILLRAFLNQGKWDEGEKLV 300

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M      P+ VTY+ LI   C     +EA  +   M+++ + P+  +++ +++ LCK 
Sbjct: 301 AEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKE 360

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G++D A  +++ MI  G  PD   YNT++   C  G  N+A E+F  +   GC  +V SY
Sbjct: 361 GRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSY 420

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +I+      +   AL +   M+SKG+ P  +TYN+
Sbjct: 421 NTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNS 457



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 162/319 (50%), Gaps = 12/319 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   + K    +    L   L S G  PD+ +YNIL+  F   G+   G  +
Sbjct: 240 PDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKL 299

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      P+ VT++ LI  LC   RI EA ++   +      PD ++Y  LI+ LC+
Sbjct: 300 VAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 359

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G   +A+ + + M +NG       C PD + Y+TI   LCK G  ++A E+F K++   
Sbjct: 360 EGRLDLAIGIMDYMISNG-------CLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG 412

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+V +Y ++I       D + A  +   M+ +GV P+ +T+N +++ LC++G ++EA 
Sbjct: 413 CPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAI 472

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL+ M Q G RP    YN ++ G C   R++ A  +F  M   GC  +  +Y +LI G 
Sbjct: 473 GLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 532

Query: 314 ----CKNKEIEGALSLYSE 328
                + + +E A SL+S 
Sbjct: 533 GFAGWRTEAMELANSLFSR 551



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 123/285 (43%), Gaps = 42/285 (14%)

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           L+N  CK G+ +     L  ++   +TPD +  T LIKG      I +A+ +   L +  
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILES-- 131

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
                              HT                     +PD   Y+ +  G CK  
Sbjct: 132 -------------------HT---------------------EPDVFAYNAVISGFCKVN 151

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            ++ A ++  +MK     PD+VTY  +I   C       A  +  +++     P V+T+ 
Sbjct: 152 RIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYT 211

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           +++      G ++EA +LLE M+  G+ PD   YN ++ G C  G V RA EL  S+ S 
Sbjct: 212 ILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSK 271

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           GC  DV SY IL+  +    + +    L +EM S+G  P  VTY+
Sbjct: 272 GCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYS 316



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR    PP V S+N +   L         L +   + S G+ PD  TYN LI+C C+ G 
Sbjct: 408 LRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGL 467

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +L  + +S F P  +++  ++ GLC   RI +A  +F ++   GC+P+  TY  
Sbjct: 468 VEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYIL 527

Query: 128 LINGLCRTGHTIVALNL 144
           LI G+   G    A+ L
Sbjct: 528 LIEGIGFAGWRTEAMEL 544


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 175/327 (53%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L K         L + +   G  P++YT+  LI+  CK G     F +
Sbjct: 292 PNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRL 351

Query: 75  LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
             +++RS  + P+  T+T++I G C E ++  A  L ++++  G  P+  TYTTLI+G C
Sbjct: 352 FLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHC 411

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+ + A  L + M    G+ G    P+  TY+ I DGLCK+G +D+A  L  K+    
Sbjct: 412 KVGNFVRAYELMDLM----GKEGF--SPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG 465

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  D VTYT L+   C   D N +   F +M+  G  P++ ++  +++  C+  +M E+ 
Sbjct: 466 LQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESE 525

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RL E  + +G+ P    Y +++ G+C  G  + A +LF  M ++GC  D  +YG LI+G 
Sbjct: 526 RLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGL 585

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
           CK  +++ A +LY  M+ KG+ P  VT
Sbjct: 586 CKESKLDDARNLYDAMMDKGLSPCEVT 612



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 170/311 (54%), Gaps = 8/311 (2%)

Query: 36  VLSLFKRLNSI---GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           VL   + LN++   G   D  T  ++I+ FC+ G V+       +++     P+ + FT+
Sbjct: 240 VLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTA 299

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LI GLC +  I +A  L  ++   G KP+V+T+TTLI+GLC+ G T  A  LF ++   +
Sbjct: 300 LINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSD 359

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
           G      KP+  TY+ + +G CKE  +++A+ L  +M+++ + P+  TYT+LI G C   
Sbjct: 360 GY-----KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVG 414

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           ++  A  L   M  +G  PN+ T+N I++ LCK G +DEA RLL  +   G++ D   Y 
Sbjct: 415 NFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYT 474

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            LM   C     NR+   F  M   G   D+ SY  LI+ +C+ K+++ +  L+ E +S 
Sbjct: 475 ILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSL 534

Query: 333 GIRPTVVTYNT 343
           G+ PT  TY +
Sbjct: 535 GLIPTKKTYTS 545



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 159/307 (51%), Gaps = 7/307 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           ++F  +   G+ PD  ++ +++   C MGRV      L  ++   F  D  T T +I   
Sbjct: 210 NMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAF 269

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C +  +      F K+   G  P+V  +T LINGLC+ G    A  L EEM         
Sbjct: 270 CQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGW---- 325

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNE 216
             KP+  T++T+ DGLCK+G+ +KA  LFLK+ + +   P+V TYT++I G+C  +  N 
Sbjct: 326 --KPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNR 383

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A+ L   M +QG+ PN  T+  +++  CK G    A  L++LM + G  P+   YN ++D
Sbjct: 384 AEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C  G ++ A  L   +  +G   D  +Y IL++ +C+  +   +L  +++ML  G  P
Sbjct: 444 GLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTP 503

Query: 337 TVVTYNT 343
            + +Y T
Sbjct: 504 DIHSYTT 510



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 156/341 (45%), Gaps = 8/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILI 59
           F + + M+R     P V +   L   L K    +    LF +L  S G  P+++TY  +I
Sbjct: 314 FELLEEMVR-RGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMI 372

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           N +CK  +++   ++L R+      P+  T+T+LI G C     + A  L   +   G  
Sbjct: 373 NGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFS 432

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+++TY  +I+GLC+ G    A  L  +++          + D +TY+ +    C++   
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG------LQADGVTYTILMSVHCRQADT 486

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +++   F KM      PD+ +YT+LI  FC      E++ LF E +  G+ P   T+  +
Sbjct: 487 NRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSM 546

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   C+ G    A +L + M   G  PD+  Y  L+ G C   +++ A+ L+ +M   G 
Sbjct: 547 ICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
                +   L   YCK  +   A+++   +  +    TV T
Sbjct: 607 SPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNT 647



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 154/332 (46%), Gaps = 9/332 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ++R     P V ++  +     K    +    L  R+   GL P+  TY  LI+
Sbjct: 349 FRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLID 408

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+G     + ++  + +  F+P+  T+ ++I GLC +  + EA  L  K+   G + 
Sbjct: 409 GHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQA 468

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT L++  CR   T  +L  F +M        V   PD  +Y+T+    C++  + 
Sbjct: 469 DGVTYTILMSVHCRQADTNRSLVFFNKM------LKVGFTPDIHSYTTLISTFCRQKQMK 522

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +++ LF +     + P   TYTS+I G+C   + + A  LF  M + G  P+ +T+  ++
Sbjct: 523 ESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALI 582

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK  K+D+A  L + M+  G+ P      TL   +C     + A  +   +E    +
Sbjct: 583 SGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWI 642

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           R V     L+   C   +++ A   + ++L K
Sbjct: 643 RTV---NTLVRKLCSEGKLDMAALFFHKLLDK 671



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 125/275 (45%), Gaps = 38/275 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L K    D    L  +++  GL  D  TY IL++  C+    +   V 
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVF 492

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L+  FTPD  ++T+LI   C + ++ E+  LF +  + G  P   TYT++I G CR
Sbjct: 493 FNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCR 552

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+T +A+ LF+ M+N        C PD+ITY  +  GLCKE  +D A+ L+  M D+ +
Sbjct: 553 YGNTSLAVKLFQRMSNHG------CAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606

Query: 195 NP--------------------------------DVVTYTSLIRGFCYANDWNEAKCLFI 222
           +P                                 + T  +L+R  C     + A   F 
Sbjct: 607 SPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFFH 666

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           +++D+    N VT    MN+  ++ K    S L E
Sbjct: 667 KLLDKEPNVNRVTLLGFMNKCYESNKYGLVSELSE 701



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           ++       ++ EA  +  +++  G  P   T   +++     G   +A N+F EM    
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMC--- 216

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
            + GV   PD +++  +    C  G V +A+     M +     D  T T +I  FC   
Sbjct: 217 -QRGV--SPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKG 273

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             N     F +M++ G+ PNV+ F  ++N LCK G + +A  LLE M++ G +P+   + 
Sbjct: 274 YVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHT 333

Query: 273 TLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           TL+DG C  G   +A  LF+ +  S+G   +V +Y  +INGYCK  ++  A  L S M  
Sbjct: 334 TLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQE 393

Query: 332 KGIRPTVVTYNT 343
           +G+ P   TY T
Sbjct: 394 QGLVPNTNTYTT 405


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 159/294 (54%), Gaps = 9/294 (3%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD+  YN ++  +C  G++     ++  +      PDA T+ +LI+GLC   R   A A+
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAV 188

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
              +   GC PDV TYT L+   C+      A+ L +EM +        C PD +TY+ +
Sbjct: 189 LEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKG------CAPDIVTYNVV 242

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +G+C+EG V+ A E    +      P+ V+Y  +++G   A  W +A+ L  EM  +G 
Sbjct: 243 LNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGC 302

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PNVVTFN++++ LC+ G ++ A  +LE M Q G  P++  YN L+  FC   ++++A E
Sbjct: 303 PPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAME 362

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               M S GC  D+ SY  L+   C+N E++ A+ L  ++  KG  P +++YNT
Sbjct: 363 FVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNT 416



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 158/332 (47%), Gaps = 6/332 (1%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P  P   ++N L   L         L++ + +   G  PD+ TY IL+   CK       
Sbjct: 161 PVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQA 220

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +L  +      PD VT+  ++ G+C E R+ +A      L ++GC+P+  +Y  ++ G
Sbjct: 221 MKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKG 280

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           L        A  L EEMA+        C P+ +T++ +   LC+ G V+ A E+  +M  
Sbjct: 281 LFTAERWEDAEKLMEEMAHKG------CPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQ 334

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               P+ ++Y  L+  FC     ++A      M+ +G  P++V++N ++  LC+NG++D 
Sbjct: 335 YGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDV 394

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  LL  +   G  P    YNT++DG    G+   A EL   M S G   D+ +Y  + +
Sbjct: 395 AIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIAS 454

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G C+   IE A+  + ++   GIRPT   YN 
Sbjct: 455 GLCREDRIEEAVRTFCKVQDMGIRPTAALYNA 486



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 162/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL     K   Y   + L   ++  G  PD+ TYN+++N  C+ GRV      
Sbjct: 199 PDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEF 258

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ V++  ++KGL    R  +A  L  ++   GC P+V T+  LI+ LCR
Sbjct: 259 LKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCR 318

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ + E+M     ++G  C P++++Y+ +    CK+  + KA E    M     
Sbjct: 319 RGLVEPAMEVLEQMP----QYG--CTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGC 372

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+V+Y +L+   C   + + A  L  ++ D+G  P ++++N +++ L K GK  EA  
Sbjct: 373 YPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALE 432

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M   G++PD   Y+T+  G C   R+  A   F  ++  G       Y  ++ G C
Sbjct: 433 LLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLC 492

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K +E   A+ L++ M+S G  P   TY 
Sbjct: 493 KRRETHNAIDLFAYMISSGCMPNESTYT 520


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +FNI+   L K             + ++G+ P++ TYN +I+ +C  GRV    +VL 
Sbjct: 236 VYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLD 295

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      PD+ T+ SLI G+C   ++ EA+ +  K++  G  P   TY TLI+G C  G
Sbjct: 296 IMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKG 355

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
             + A    +EM            P   TY+ +   L  EG +D+A  +   M D  I P
Sbjct: 356 DLVKAFGYRDEMVRR------AILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVP 409

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D +TY  LI G+C   +  +A  L  EM+ +G+QP +VT+  ++  L K  +M  A  L 
Sbjct: 410 DSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLF 469

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E +I+ G  PD  ++N L+DG C  G ++RA  L   M+    + D  +Y  L+ G C+ 
Sbjct: 470 EKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCRE 529

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++E A  L  EM  +GIRP  ++YNT
Sbjct: 530 GKVEEARELLKEMKRRGIRPDHISYNT 556



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 164/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   + K    +    + +++  IGL P   TYN LI+ +C  G +   F  
Sbjct: 304 PDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGY 363

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    P   T+  LI  L  E ++ EA  +   +   G  PD  TY  LING CR
Sbjct: 364 RDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCR 423

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A NL +EM +         +P  +TY+++   L K   +  A +LF K+  E  
Sbjct: 424 CGNAKKAFNLHDEMISKG------IQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGA 477

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD++ + +LI G C   + + A  L  EM  + + P+ VT+N +M   C+ GK++EA  
Sbjct: 478 SPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARE 537

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G+RPD   YNTL+ G+   G +N A  +   M S G    + +Y  LI G C
Sbjct: 538 LLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLC 597

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           KN++ + A  L  EM+SKGI P   TY
Sbjct: 598 KNQQGDLAEELLKEMVSKGITPDDSTY 624



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/275 (34%), Positives = 146/275 (53%), Gaps = 9/275 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L      D    + K +   G+ PD  TYNILIN +C+ G     F +
Sbjct: 374 PTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNL 433

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P  VT+TSLI  L   +R+  A  LF K+   G  PD+  +  LI+G C 
Sbjct: 434 HDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCA 493

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L +EM   N        PD +TY+T+  G C+EG V++A+EL  +MK   I
Sbjct: 494 NGNLDRAFALLKEMDKRN------IVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGI 547

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD ++Y +LI G+    D N+A  +  EM+  G  P ++T+N ++  LCKN + D A  
Sbjct: 548 RPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEE 607

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           LL+ M+  G+ PD S Y +L++G    G+V+ + E
Sbjct: 608 LLKEMVSKGITPDDSTYFSLIEGI---GKVDDSSE 639



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 167/359 (46%), Gaps = 41/359 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++L     + K  D     F  +   G+ P + T+N +++ F K+ +    +V+   + 
Sbjct: 169 FDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMF 228

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R        TF  +I  LC E ++ +A      +   G KP+V TY T+I+G C  G   
Sbjct: 229 RLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVE 288

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  + + M N   E      PD+ TY ++  G+CK G +++A  +  KMK+  + P  V
Sbjct: 289 GARMVLDIMKNRGVE------PDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAV 342

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY +LI G+C   D  +A     EM+ + + P V T+N++++ L   GKMDEA  +++ M
Sbjct: 343 TYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDM 402

Query: 260 IQIGVRPDASVYNTLMDGFCLTG-----------------------------------RV 284
              G+ PD+  YN L++G+C  G                                   R+
Sbjct: 403 GDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRM 462

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A +LF  +   G   D+  +  LI+G+C N  ++ A +L  EM  + I P  VTYNT
Sbjct: 463 KAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNT 521



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 106/201 (52%), Gaps = 3/201 (1%)

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
           ++F E+A      G      +I +  +    C+    D A E F  MK++ + P + T+ 
Sbjct: 149 DVFHELAITRDRLGT---KSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFN 205

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           +++  F   N       L+ EM    ++  V TFN+++N LCK GK+ +A   +  M  +
Sbjct: 206 AMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENL 265

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           GV+P+   YNT++ G+C  GRV  A+ +   M++ G   D ++YG LI+G CK  ++E A
Sbjct: 266 GVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEA 325

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
             +  +M   G+ PT VTYNT
Sbjct: 326 SGILEKMKEIGLLPTAVTYNT 346



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 6/203 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L   L+K         LF+++   G  PDL  +N LI+  C  G +   F +
Sbjct: 444 PTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFAL 503

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    PD VT+ +L++G C E ++ EA  L  +++  G +PD  +Y TLI+G  +
Sbjct: 504 LKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSK 563

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + +EM        +   P  +TY+ +  GLCK    D A+EL  +M  + I
Sbjct: 564 RGDINDAFTIRDEM------LSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGI 617

Query: 195 NPDVVTYTSLIRGFCYANDWNEA 217
            PD  TY SLI G    +D +EA
Sbjct: 618 TPDDSTYFSLIEGIGKVDDSSEA 640


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 175/358 (48%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L K++  +     F  + ++GL PDL TYN ++N +CK G +     +
Sbjct: 347 PTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWL 406

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG + R+   P  +T+ +LI G C    + EA  L  ++   GC PDV TYT L+NG  +
Sbjct: 407 LGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHK 466

Query: 135 TGHTIVALNLFEEMANGNGE---------------FGVVCK--------------PDAIT 165
             +  +A   F+EM +   +                G   K              PD +T
Sbjct: 467 VRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVT 526

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ I DGLCK G +  AK+L +KM  + + PD +TYT LI   C     +EA+ L   M+
Sbjct: 527 YNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMV 586

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G+QP+VVT+ ++++  C+ G +  A      M+ +G+ P+   YN L+   C TGR  
Sbjct: 587 SDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTL 646

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A   F  M   G   + ++Y +LI+G C+      A+ LY EM   GI P   T+N 
Sbjct: 647 LAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNA 704



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 155/309 (50%), Gaps = 9/309 (2%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L+ F+ +   G+ PD+   N ++       R      V   +L+    P  VT+ +L+  
Sbjct: 193 LAAFRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDS 252

Query: 97  LCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
              E R  EA+ L  ++  +  GC  +  TY  +I+ L R GH   A  L + M      
Sbjct: 253 FLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMR----- 307

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
             +  K  + TY+ +   L + GFV K + L ++M++E I P +VTY ++I G   +   
Sbjct: 308 --LSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQV 365

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             A+  F EM   G+ P+++T+N ++N  CK G + EA  LL  + + G+ P    YNTL
Sbjct: 366 EAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTL 425

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DG+C  G +  A+ L   M   GC  DV +Y IL+NG  K + +  A   + EMLSKG+
Sbjct: 426 IDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGL 485

Query: 335 RPTVVTYNT 343
           +P    YNT
Sbjct: 486 QPDCFAYNT 494



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 157/335 (46%), Gaps = 11/335 (3%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V   N +   L     +D V ++++ +  + + P + TYN L++ F K GR   
Sbjct: 202 HGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDE 261

Query: 71  GFVVLGRILRS---CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
             ++L  +      C   D VT+  +I  L  E  +  AA L   +R    K   FTY  
Sbjct: 262 ASMLLKEMETQGGGCLLND-VTYNVVISFLAREGHLENAAKLVDSMR-LSKKASSFTYNP 319

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI  L   G       L  EM N     G++  P  +TY+ I  GL K   V+ A+  F 
Sbjct: 320 LITALLERGFVQKVEALQMEMENE----GIM--PTLVTYNAIIHGLLKSEQVEAAQLKFA 373

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M+   + PD++TY S++ G+C A +  EA  L  ++   G+ P V+T+N +++  C+ G
Sbjct: 374 EMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLG 433

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            ++EA RL E M++ G  PD   Y  LM+G      +  A+E F  M S G   D F+Y 
Sbjct: 434 GLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYN 493

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             I       +   A  L   M+ KGI P  VTYN
Sbjct: 494 TRICAELILGDTHKAFQLREVMMLKGIYPDTVTYN 528


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 182/341 (53%), Gaps = 10/341 (2%)

Query: 7   MLRMHPSPPPVCS--FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           + R +P   P  S  +N+L          D   SL + ++  G+  +  T +I++   C+
Sbjct: 13  LFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCR 72

Query: 65  MGRVSPGFVVLGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDV 122
            GRV+         L  +   PD V++T+LI GLC   R+  A  LF K+  A GC+P+ 
Sbjct: 73  CGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNA 132

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FTY  L++GLC+      A  +  E    +        PD +TY+T+   L + G VD+A
Sbjct: 133 FTYNALVDGLCKQDRLDAARAVITEARKRD------FAPDVVTYNTLMAALFQLGRVDEA 186

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
              F +M +E   P +V++ ++I G C A    +A  +F EM+D+   PN+VT++V+++ 
Sbjct: 187 LATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDG 246

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK+ ++DEA +LL+ M+  G RPD   Y  L+ GF   GR++ A  L   M S GC+ D
Sbjct: 247 LCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPD 306

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +Y ++I+  CK   ++ A  ++ E+++    P VVTY+ 
Sbjct: 307 VVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSA 347



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 133/260 (51%), Gaps = 9/260 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L +    D  L+ F ++   G  P L ++N +I   C+  R++    V
Sbjct: 165 PDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEV 224

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++   F P+ VT++ +I GLC   ++ EA  L  ++ + GC+PD+  YT L+ G   
Sbjct: 225 FNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSA 284

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL L   M +        C PD +TY+ + D LCK G VD A E+F ++     
Sbjct: 285 AGRLDSALGLLRRMVSQG------CIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKC 338

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+VVTY++LI G+C A+  +E   +  EM     +PNVVT+N ++  L    + +EA  
Sbjct: 339 SPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYG 395

Query: 255 LLELMIQIGVRPDASVYNTL 274
           +   M + G  PDA  Y  L
Sbjct: 396 MFREMSECGFVPDARTYRGL 415



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 143/306 (46%), Gaps = 9/306 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+      P   ++N L   L K    D   ++          PD+ TYN L+ 
Sbjct: 116 FDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMA 175

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              ++GRV        ++    + P  V+F ++I GLC   R+ +A  +F ++      P
Sbjct: 176 ALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHP 235

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY+ +I+GLC++     A  L + M +        C+PD + Y+ +  G    G +D
Sbjct: 236 NLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEG------CRPDLVAYTPLVLGFSAAGRLD 289

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  L  +M  +   PDVVTYT +I   C     ++A  +F E++     PNVVT++ ++
Sbjct: 290 SALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALI 349

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
              C+  ++DE  +   +M ++  RP+   YNT++ G  +  R   A  +F  M   G +
Sbjct: 350 GGYCRASRVDEGGK---VMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFV 406

Query: 301 RDVFSY 306
            D  +Y
Sbjct: 407 PDARTY 412



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 9/194 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++++   L K+   D    L  R+ S G  PDL  Y  L+  F   GR+     +
Sbjct: 235 PNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGL 294

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R++     PD VT+T +I  LC   R+ +A  +F +L A  C P+V TY+ LI G CR
Sbjct: 295 LRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCR 354

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                    +  EMA         C+P+ +TY+T+  GL      ++A  +F +M +   
Sbjct: 355 ASRVDEGGKVMREMA---------CRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGF 405

Query: 195 NPDVVTYTSLIRGF 208
            PD  TY  L R  
Sbjct: 406 VPDARTYRGLKRAL 419


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 173/332 (52%), Gaps = 9/332 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF-V 73
           P  C++NIL  C  + +  D  L+LF  +   GL  D  T N L+ C C   R      V
Sbjct: 155 PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNV 214

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLING 131
           +L R+      P+AV+++ ++K LC  S    A  L   +   G  C PDV  Y+T+I+G
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHG 274

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
               G T  A +LF EM       GV  KPD +TY+ I D LCK   +DKA+ +  +M  
Sbjct: 275 FFNEGETGKACSLFHEMTRQ----GV--KPDVVTYNLIIDALCKARAMDKAELVLRQMTT 328

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           +   PD VTY+ +I G+       EA  +F EM  +G+ PN+VT N  +  LCK+G+  E
Sbjct: 329 DGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKE 388

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A+   + M   G +PD   Y TL+ G+   G       LF SM+SNG   +   + ILI+
Sbjct: 389 AAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIH 448

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            Y K   ++ A+ +++EM  +G+ P VVTY+T
Sbjct: 449 AYAKRGMVDDAMLIFTEMQQQGVSPDVVTYST 480



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 168/329 (51%), Gaps = 5/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+  L    A    +  ++ LF  + S G+  + + + ILI+ + K G V    ++
Sbjct: 403 PDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLI 462

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +   +PD VT++++I       R+ +A   F ++ A G +P+   Y+++I G C 
Sbjct: 463 FTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCM 522

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  L  EM N       + +PD + +S++ + LCK+G V  A ++F    D   
Sbjct: 523 HGGLVKAKELVSEMINKG-----IPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGE 577

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V+T+ SLI G+C     ++A  +   M   GV+P++VT+N +++   KNG++++   
Sbjct: 578 RPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLT 637

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M + GV+P+   Y  ++ G    GR   A++ F  M  +G    V  YGI++ G C
Sbjct: 638 LFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLC 697

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +N   + A+ L+ ++ +  ++ ++   NT
Sbjct: 698 RNNCADEAIILFQKLGTMNVKFSITILNT 726



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 169/326 (51%), Gaps = 13/326 (3%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F IL    AK    D  + +F  +   G+ PD+ TY+ +I+ F +MGR++       +++
Sbjct: 443 FTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMV 502

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPDVFTYTTLINGLCRTGHT 138
                P+   ++S+I+G C    +++A  L +++   G  +PD+  ++++IN LC+ G  
Sbjct: 503 ARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRV 562

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
           + A ++F+ +A   GE     +P  IT++++ DG C  G +DKA ++   M+   + PD+
Sbjct: 563 MDAHDIFD-LATDIGE-----RPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDI 616

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY +L+ G+      N+   LF EM  +GV+PN VT+ +++  L + G+   A +    
Sbjct: 617 VTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE 676

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL---INGYCK 315
           MI+ G     S+Y  ++ G C   R N A E  +  +  G M   FS  IL   IN   K
Sbjct: 677 MIESGTTVTVSIYGIILGGLC---RNNCADEAIILFQKLGTMNVKFSITILNTMINAMYK 733

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTY 341
            +  E A  L++ + + G+ P   TY
Sbjct: 734 VQRKEEAKELFATISASGLLPNESTY 759



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 139/311 (44%), Gaps = 6/311 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  F+ +   L K+        +F     IG  P + T+N LI+ +C +G++   F +
Sbjct: 544 PDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKI 603

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD VT+ +L+ G     RI +   LF +++  G KP+  TY  ++ GL R
Sbjct: 604 LDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR 663

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T+ A   F EM        V        Y  I  GLC+    D+A  LF K+   N+
Sbjct: 664 AGRTVAARKKFHEMIESGTTVTVS------IYGIILGGLCRNNCADEAIILFQKLGTMNV 717

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              +    ++I          EAK LF  +   G+ PN  T+ V++  L K+G +++A+ 
Sbjct: 718 KFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANN 777

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M + G+ P + + N ++      G + +A      ++    + +  +  ++++ + 
Sbjct: 778 MFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFS 837

Query: 315 KNKEIEGALSL 325
           +  + +  + L
Sbjct: 838 RKGKYQEDIKL 848


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 195/390 (50%), Gaps = 54/390 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + PDL TY ILI
Sbjct: 37  VFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGADEVTPDLCTYGILI 94

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
            C C+ GR+  GF  LG +++  F  +A+TFT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 95  GCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGC 154

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG------------------------- 153
            P+VF+Y  L+NGLC    +  AL L   MA+  G                         
Sbjct: 155 IPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDK 214

Query: 154 ---------EFGVVCKPDAITYSTITDGLCK------------EGFVDKAKELFLKMKDE 192
                    + G++  PD +TYS+I   LCK            EG V ++++LF  M   
Sbjct: 215 AYSTYHEMLDRGIL--PDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRI 272

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PD++TY++LI G+C A   +EA  L   M+  G++PN VT++ ++N  CK  +M++A
Sbjct: 273 GVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 332

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L + M   GV PD   YN ++ G   T R   AKEL+V +  +G   ++ +Y I+++G
Sbjct: 333 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 392

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            CKNK  + AL ++  +    ++    T+N
Sbjct: 393 LCKNKLTDDALQMFQNLCLMDLKLEARTFN 422



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 163/334 (48%), Gaps = 21/334 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL---NSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P V S+N L   L         L L   +      G  PD+ +Y  +IN F K G     
Sbjct: 156 PNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCA------------ESRIMEAAALFTKLRAFGCK 119
           +     +L     PD VT++S+I  LC             E R++E+  LF  +   G K
Sbjct: 216 YSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVK 275

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD+ TY+TLI+G C  G    A+ L   M +      V  KP+ +TYST+ +G CK   +
Sbjct: 276 PDIITYSTLIDGYCLAGKMDEAMKLLSGMVS------VGLKPNTVTYSTLINGYCKISRM 329

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           + A  LF +M+   ++PD++TY  +++G         AK L++ + + G Q  + T+N+I
Sbjct: 330 EDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNII 389

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LCKN   D+A ++ + +  + ++ +A  +N ++D     GR + AK+LFV+  SNG 
Sbjct: 390 LHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGL 449

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           + + ++Y ++         +E    L+  M   G
Sbjct: 450 VPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 483



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 34/321 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLS------------LFKRLNSIGLFPDLYTYNILINCF 62
           P V +++ +   L K +  D   S            LF  +  IG+ PD+ TY+ LI+ +
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 288

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G++     +L  ++     P+ VT+++LI G C  SR+ +A  LF ++ + G  PD+
Sbjct: 289 CLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDI 348

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  ++ GL +T  T  A  L+  +     +       +  TY+ I  GLCK    D A
Sbjct: 349 ITYNIILQGLFQTRRTAAAKELYVRITESGTQI------ELSTYNIILHGLCKNKLTDDA 402

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++F  +   ++  +  T+  +I         +EAK LF+     G+ PN  T+ ++   
Sbjct: 403 LQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 462

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           +   G ++E  +L   M   G   D+ + N     F +   + RA +         C+  
Sbjct: 463 IIGQGLLEELDQLFLSMEDNGCTVDSGMLN-----FIVRELLQRALKF--------CVGI 509

Query: 303 VFSYGILING---YCKNKEIE 320
           +FSY  +  G    C N E++
Sbjct: 510 LFSYSPIRGGIFSVCVNSEVQ 530



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 4/156 (2%)

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + + PD+ TY  LI   C A   +        ++ +G +   +TF  ++  LC + +  +
Sbjct: 81  DEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSD 140

Query: 252 ASRL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN---GCMRDVFSYG 307
           A  + L  M ++G  P+   YN L++G C   R   A EL   M  +   G   DV SY 
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT 200

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +ING+ K  + + A S Y EML +GI P VVTY++
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSS 236


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 175/330 (53%), Gaps = 7/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN +    A++ + +    +++ +   G  PD  +Y+ILI+   K+G++     +
Sbjct: 43  PDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKI 102

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++    TP    ++SL++ L    R+  A++LF ++   G  PD   +  LI GLC+
Sbjct: 103 LSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQ 162

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A   F++M          C+P+   Y+ +  GLC  G +++A  LF +MK  + 
Sbjct: 163 AGKVKDASERFKQMPKHG------CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSC 216

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDVVTY +L+   C A    E   LF  M   G  PNV+TF+ +++ LC+ G++++A  
Sbjct: 217 SPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALE 276

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M++ G +P+   Y TL+ G C   +V +A+ELF  M       D  +Y  LI GYC
Sbjct: 277 VFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYC 336

Query: 315 KNKEIEGALSLYSEML-SKGIRPTVVTYNT 343
           K   ++ A  LY EM    G++PT+VT+NT
Sbjct: 337 KRGSMDEAEKLYREMSGGAGLQPTIVTFNT 366



 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 171/341 (50%), Gaps = 8/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+R    P  +  + ++ G     K  D     FK++   G  P++  YN+L++  
Sbjct: 137 LFDEMIRGGHHPDRLMFYELILGLCQAGKVKDAS-ERFKQMPKHGCQPNVPVYNVLLHGL 195

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G++     +   +     +PD VT+ +L+  +C   R+ E   LF  +RA G  P+V
Sbjct: 196 CSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNV 255

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T++TLI+GLCRTG    AL +F  M          CKP+  TY+T+  GLC+   V +A
Sbjct: 256 ITFSTLIHGLCRTGELEKALEVFGSMLEAG------CKPNKYTYTTLISGLCRAEKVIQA 309

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD-QGVQPNVVTFNVIMN 241
           +ELF KM    I PD V Y SLI G+C     +EA+ L+ EM    G+QP +VTFN +++
Sbjct: 310 RELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLID 369

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK GK+  A+ L+  M   G+  D+  Y  L+ G     +++ A E++  M     + 
Sbjct: 370 GFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLL 429

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           D  S    + G CK   I+ A +++      G  P   T+ 
Sbjct: 430 DPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFR 470



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 168/324 (51%), Gaps = 7/324 (2%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           M    P + +++ L   LAK +  D   SLF  +   G  PD   +  LI   C+ G+V 
Sbjct: 108 MRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVK 167

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
                  ++ +    P+   +  L+ GLC+  ++ +A  LF ++++  C PDV TY TL+
Sbjct: 168 DASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLL 227

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           + +C+         LFE M       G V  P+ IT+ST+  GLC+ G ++KA E+F  M
Sbjct: 228 DAVCKARRVEEGCKLFEAMRAA----GYV--PNVITFSTLIHGLCRTGELEKALEVFGSM 281

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            +    P+  TYT+LI G C A    +A+ LF +M    + P+ V +N ++   CK G M
Sbjct: 282 LEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSM 341

Query: 250 DEASRLL-ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           DEA +L  E+    G++P    +NTL+DGFC  G++ RA EL   M + G   D  +Y I
Sbjct: 342 DEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRI 401

Query: 309 LINGYCKNKEIEGALSLYSEMLSK 332
           LI G  +  +++ AL +Y +M  K
Sbjct: 402 LIAGLSRATKLDEALEVYKQMREK 425



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 163/325 (50%), Gaps = 7/325 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V  +N+L   L  +   +   +LF  + S    PD+ TYN L++  CK  RV  
Sbjct: 179 HGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEE 238

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
           G  +   +  + + P+ +TF++LI GLC    + +A  +F  +   GCKP+ +TYTTLI+
Sbjct: 239 GCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIS 298

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLCR    I A  LFE+M            PDA+ Y+++  G CK G +D+A++L+ +M 
Sbjct: 299 GLCRAEKVIQARELFEKMTQ------ACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMS 352

Query: 191 -DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               + P +VT+ +LI GFC       A  L  EM  +G+  +  T+ +++  L +  K+
Sbjct: 353 GGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKL 412

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           DEA  + + M +     D     + + G C TG +++A  +F +   +G + +  ++ IL
Sbjct: 413 DEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRIL 472

Query: 310 INGYCKNKEIEGALSLYSEMLSKGI 334
                K   +E A  L     ++ I
Sbjct: 473 SESLIKLGRVEDAQKLMEPAKARDI 497



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 146/293 (49%), Gaps = 6/293 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           +++TY+ +I    K  +    + VL  ++ +   PD   F  +++G    + + +A  ++
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
             +   G KPD  +Y  LI+GL + G    +L +  EM    G+      P    YS++ 
Sbjct: 69  QHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVM-RGQ-----TPSMQAYSSLV 122

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
             L K   VD A  LF +M     +PD + +  LI G C A    +A   F +M   G Q
Sbjct: 123 RALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQ 182

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PNV  +NV+++ LC +G++++A+ L   M      PD   YNTL+D  C   RV    +L
Sbjct: 183 PNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKL 242

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           F +M + G + +V ++  LI+G C+  E+E AL ++  ML  G +P   TY T
Sbjct: 243 FEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTT 295



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 141/284 (49%), Gaps = 5/284 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           ++ H   P V ++N L   + K +  +    LF+ + + G  P++ T++ LI+  C+ G 
Sbjct: 211 MKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGE 270

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     V G +L +   P+  T+T+LI GLC   ++++A  LF K+      PD   Y +
Sbjct: 271 LEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNS 330

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI G C+ G    A  L+ EM+ G G      +P  +T++T+ DG CK G + +A EL  
Sbjct: 331 LIAGYCKRGSMDEAEKLYREMSGGAG-----LQPTIVTFNTLIDGFCKLGKLGRANELVA 385

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M  + +  D  TY  LI G   A   +EA  ++ +M ++    + V+    +  LCK G
Sbjct: 386 EMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTG 445

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
            +D+A  + E   + G  P+   +  L +     GRV  A++L 
Sbjct: 446 NIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 489



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 70/225 (31%)

Query: 189 MKDENINPDVVTYTSLIR-----------------------------------GFCYAND 213
           M+D+NI  +V TY+S+I+                                   GF  +N+
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE---------------------- 251
             +A+ ++  M++ G +P+ V+++++++ L K GK+DE                      
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 252 -------------ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
                        AS L + MI+ G  PD  ++  L+ G C  G+V  A E F  M  +G
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C  +V  Y +L++G C + ++E A +L++EM S    P VVTYNT
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNT 225


>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
          Length = 348

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 161/282 (57%), Gaps = 7/282 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+R  P  P +  F+ LF  +AK K Y+ VLSL K++   G+   +YT +I+INCF
Sbjct: 68  LFQSMIRSRP-LPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIVINCF 126

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++   F VLG+IL+  + PD VTF++L+ GLC E R+ EA  +  ++     +P++
Sbjct: 127 CRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKVRPNL 186

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T  TL+NGLC       A  L + M     E G  C+PD  TY  I + +CK G    A
Sbjct: 187 VTLNTLVNGLCLKDQVSEAEALVDRMV----EHG--CQPDQFTYGPILNRICKSGNTVSA 240

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L  KM+D+ + P VVTY  +I   C   +++EA  LF EM  +G++ +V+T+N ++  
Sbjct: 241 LDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGG 300

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
            C  G+ D+ ++LL  MI   + P+   ++ L+D F   G++
Sbjct: 301 FCNAGRWDDGAQLLRDMITRNITPNVVTFSALIDCFVKEGKL 342



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 130/266 (48%), Gaps = 6/266 (2%)

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           ++RS   P  + F+ L   +    +     +L  ++   G    ++T + +IN  CR   
Sbjct: 72  MIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIVINCFCRRRK 131

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A ++  ++     E      PD +T+ST+ +GLC EG V +A  +  +M +  + P+
Sbjct: 132 LGFAFSVLGKILKLGYE------PDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKVRPN 185

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           +VT  +L+ G C  +  +EA+ L   M++ G QP+  T+  I+N +CK+G    A  LL 
Sbjct: 186 LVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLR 245

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M    V+P    YN ++D  C  G  + A  LF  ME  G   DV +Y  LI G+C   
Sbjct: 246 KMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNAG 305

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
             +    L  +M+++ I P VVT++ 
Sbjct: 306 RWDDGAQLLRDMITRNITPNVVTFSA 331



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 119/239 (49%), Gaps = 6/239 (2%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           +A  LF  +      P +  ++ L + + +T    + L+L ++M        +       
Sbjct: 64  DAVDLFQSMIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIY------ 117

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T S + +  C+   +  A  +  K+      PD VT+++L+ G C     +EA  +   M
Sbjct: 118 TLSIVINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRM 177

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           ++  V+PN+VT N ++N LC   ++ EA  L++ M++ G +PD   Y  +++  C +G  
Sbjct: 178 VEMKVRPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNT 237

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A +L   ME       V +Y ++I+  CKN   + ALSL++EM  +GI+  V+TYN+
Sbjct: 238 VSALDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNS 296



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 35/198 (17%)

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           D A +LF  M      P ++ ++ L         +     L  +M  QG+  ++ T +++
Sbjct: 63  DDAVDLFQSMIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIV 122

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR---------------- 283
           +N  C+  K+  A  +L  ++++G  PD   ++TL++G CL GR                
Sbjct: 123 INCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKV 182

Query: 284 -------------------VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
                              V+ A+ L   M  +GC  D F+YG ++N  CK+     AL 
Sbjct: 183 RPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALD 242

Query: 325 LYSEMLSKGIRPTVVTYN 342
           L  +M  K ++P VVTYN
Sbjct: 243 LLRKMEDKKVKPQVVTYN 260



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N++   L KN +YD  LSLF  +   G+  D+ TYN LI  FC  GR   G  +
Sbjct: 254 PQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQL 313

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIM 104
           L  ++    TP+ VTF++LI     E +++
Sbjct: 314 LRDMITRNITPNVVTFSALIDCFVKEGKLI 343



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 57/129 (44%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   ++  +   + K+ +  + L L +++    + P + TYN++I+  CK G    
Sbjct: 215 HGCQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDE 274

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   + R     D +T+ SLI G C   R  + A L   +      P+V T++ LI+
Sbjct: 275 ALSLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQLLRDMITRNITPNVVTFSALID 334

Query: 131 GLCRTGHTI 139
              + G  I
Sbjct: 335 CFVKEGKLI 343



 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 45/96 (46%)

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K D+A  L + MI+    P    ++ L      T +      L   ME  G    +++  
Sbjct: 61  KKDDAVDLFQSMIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLS 120

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+IN +C+ +++  A S+  ++L  G  P  VT++T
Sbjct: 121 IVINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFST 156


>gi|22128708|gb|AAM92820.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432840|gb|AAP54427.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
          Length = 517

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 167/302 (55%), Gaps = 8/302 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILINCFCKMGRVSPGFV 73
           + SFN     +A++     V SLF R+   G   + PDL TY+ILI C C+ GR+  GF 
Sbjct: 195 IYSFNRTLTDVARDSPAAAV-SLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFA 253

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGCKPDVFTYTTLINGL 132
            LG +++  F  +A+TF  L+KGLCA+ R  +A  +   ++    C PDVF+ T L+ GL
Sbjct: 254 ALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGL 313

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C    +  AL L   MA+   + G    PD ++Y+T+ +G  KEG  DKA   + +M D 
Sbjct: 314 CDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR 370

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            I+P+VVTY+S+I   C A   ++A  +   M+  GV P+ +T+N I++  C +G+  EA
Sbjct: 371 RISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 430

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
              L+ M   GV P+   Y +LM+  C  GR   A+++F SM   G   D+ +Y  L+ G
Sbjct: 431 IGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQG 490

Query: 313 YC 314
           Y 
Sbjct: 491 YA 492



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 6/180 (3%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SPP V S+  +     K    D   S +  +    + P++ TY+ +I   CK   +    
Sbjct: 337 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAM 396

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            VL  ++++   PD +T+ S++ G C+  +  EA     K+R+ G +P+V TY +L+N L
Sbjct: 397 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYL 456

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A  +F+ M     E      PD  TY T+  G   +G + +   L   M  E
Sbjct: 457 CKNGRCTEARKIFDSMTKRGLE------PDIATYRTLLQGYATKGALVEMHALLDLMDPE 510


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 180/372 (48%), Gaps = 30/372 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + ++  M R+  S   V +FNI+   L K             +  +G  P++ +YN +I+
Sbjct: 212 WVLYAEMFRLRISST-VYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIH 270

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +   G +     +L  +      PD+ T+ SLI G+C E R+ EA+ LF K+   G  P
Sbjct: 271 GYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVP 330

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGN---------------------GEFGVVC 159
           +  TY TLI+G C  G    A +  +EM                         GE   + 
Sbjct: 331 NAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMI 390

Query: 160 K--------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
           K        PDAITY+ + +G  + G   KA +L  +M  + I P  VTYTSLI      
Sbjct: 391 KEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRR 450

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N   EA  LF +++DQGV P+V+ FN +++  C NG ++ A  LL+ M +  V PD   +
Sbjct: 451 NRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTF 510

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           NTLM G C  G+V  A+ L   M+  G   D  SY  LI+GY +  +I+ A  +  EMLS
Sbjct: 511 NTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLS 570

Query: 332 KGIRPTVVTYNT 343
            G  PT++TYN 
Sbjct: 571 IGFNPTLLTYNA 582



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 170/339 (50%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I D M R+    P   ++  L   + K    +    LF ++  IGL P+  TYN LI+ +
Sbjct: 284 ILDAM-RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY 342

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +   F     +++    P   T+  L+  L  E R+ EA  +  ++R  G  PD 
Sbjct: 343 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA 402

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LING  R G+   A +L  EM +   E      P  +TY+++   L +   + +A
Sbjct: 403 ITYNILINGYSRCGNAKKAFDLHNEMLSKGIE------PTHVTYTSLIYVLSRRNRMKEA 456

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF K+ D+ ++PDV+ + +++ G C   +   A  L  EM  + V P+ VTFN +M  
Sbjct: 457 DDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 516

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ GK++EA  LL+ M + G++PD   YNTL+ G+   G +  A  +   M S G    
Sbjct: 517 RCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPT 576

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +Y  LI   CKN+E + A  L  EM++KGI P   TY
Sbjct: 577 LLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 615



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 137/264 (51%), Gaps = 6/264 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L           + K +   G+ PD  TYNILIN + + G     F +
Sbjct: 365 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDL 424

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P  VT+TSLI  L   +R+ EA  LF K+   G  PDV  +  +++G C 
Sbjct: 425 HNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCA 484

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L +EM   +        PD +T++T+  G C+EG V++A+ L  +MK   I
Sbjct: 485 NGNVERAFMLLKEMDRKS------VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGI 538

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD ++Y +LI G+    D  +A  +  EM+  G  P ++T+N ++  LCKN + D A  
Sbjct: 539 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 598

Query: 255 LLELMIQIGVRPDASVYNTLMDGF 278
           LL+ M+  G+ PD S Y +L++G 
Sbjct: 599 LLKEMVNKGISPDDSTYLSLIEGM 622



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 161/345 (46%), Gaps = 11/345 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSF--NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNIL 58
           +C+   +L   PSP         ++   +A N+     L+L +   S+        +++L
Sbjct: 107 YCLAVVLLARLPSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSV---KSSIVFDLL 163

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           +   C++ R    F     +      P   T   ++      +R+  A  L+ ++     
Sbjct: 164 VRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRI 223

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
              V+T+  ++N LC+ G    A      M       G+  KP+ ++Y+TI  G    G 
Sbjct: 224 SSTVYTFNIMVNVLCKEGKLKKAREFIGFME------GLGFKPNVVSYNTIIHGYSSRGN 277

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           ++ A+ +   M+ + I PD  TY SLI G C      EA  LF +M++ G+ PN VT+N 
Sbjct: 278 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 337

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++  C  G ++ A    + M++ G+ P  S YN L+    + GR+  A ++   M   G
Sbjct: 338 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKG 397

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + D  +Y ILINGY +    + A  L++EMLSKGI PT VTY +
Sbjct: 398 IIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTS 442



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 53/119 (44%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN L     +    +    L   +   G+ PD  +YN LI+ + + G +   F 
Sbjct: 504 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFR 563

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           V   +L   F P  +T+ +LIK LC       A  L  ++   G  PD  TY +LI G+
Sbjct: 564 VRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 622


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 180/372 (48%), Gaps = 30/372 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + ++  M R+  S   V +FNI+   L K             +  +G  P++ +YN +I+
Sbjct: 234 WVLYAEMFRLRISST-VYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIH 292

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +   G +     +L  +      PD+ T+ SLI G+C E R+ EA+ LF K+   G  P
Sbjct: 293 GYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVP 352

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGN---------------------GEFGVVC 159
           +  TY TLI+G C  G    A +  +EM                         GE   + 
Sbjct: 353 NAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMI 412

Query: 160 K--------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
           K        PDAITY+ + +G  + G   KA +L  +M  + I P  VTYTSLI      
Sbjct: 413 KEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRR 472

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N   EA  LF +++DQGV P+V+ FN +++  C NG ++ A  LL+ M +  V PD   +
Sbjct: 473 NRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTF 532

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           NTLM G C  G+V  A+ L   M+  G   D  SY  LI+GY +  +I+ A  +  EMLS
Sbjct: 533 NTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLS 592

Query: 332 KGIRPTVVTYNT 343
            G  PT++TYN 
Sbjct: 593 IGFNPTLLTYNA 604



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 170/339 (50%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I D M R+    P   ++  L   + K    +    LF ++  IGL P+  TYN LI+ +
Sbjct: 306 ILDAM-RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY 364

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +   F     +++    P   T+  L+  L  E R+ EA  +  ++R  G  PD 
Sbjct: 365 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA 424

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LING  R G+   A +L  EM +   E      P  +TY+++   L +   + +A
Sbjct: 425 ITYNILINGYSRCGNAKKAFDLHNEMLSKGIE------PTHVTYTSLIYVLSRRNRMKEA 478

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF K+ D+ ++PDV+ + +++ G C   +   A  L  EM  + V P+ VTFN +M  
Sbjct: 479 DDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 538

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ GK++EA  LL+ M + G++PD   YNTL+ G+   G +  A  +   M S G    
Sbjct: 539 RCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPT 598

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +Y  LI   CKN+E + A  L  EM++KGI P   TY
Sbjct: 599 LLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 637



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 137/264 (51%), Gaps = 6/264 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L           + K +   G+ PD  TYNILIN + + G     F +
Sbjct: 387 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDL 446

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P  VT+TSLI  L   +R+ EA  LF K+   G  PDV  +  +++G C 
Sbjct: 447 HNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCA 506

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L +EM   +        PD +T++T+  G C+EG V++A+ L  +MK   I
Sbjct: 507 NGNVERAFMLLKEMDRKS------VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGI 560

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD ++Y +LI G+    D  +A  +  EM+  G  P ++T+N ++  LCKN + D A  
Sbjct: 561 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 620

Query: 255 LLELMIQIGVRPDASVYNTLMDGF 278
           LL+ M+  G+ PD S Y +L++G 
Sbjct: 621 LLKEMVNKGISPDDSTYLSLIEGM 644



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 161/345 (46%), Gaps = 11/345 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSF--NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNIL 58
           +C+   +L   PSP         ++   +A N+     L+L +   S+        +++L
Sbjct: 129 YCLAVVLLARLPSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSV---KSSIVFDLL 185

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           +   C++ R    F     +      P   T   ++      +R+  A  L+ ++     
Sbjct: 186 VRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRI 245

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
              V+T+  ++N LC+ G    A      M       G+  KP+ ++Y+TI  G    G 
Sbjct: 246 SSTVYTFNIMVNVLCKEGKLKKAREFIGFME------GLGFKPNVVSYNTIIHGYSSRGN 299

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           ++ A+ +   M+ + I PD  TY SLI G C      EA  LF +M++ G+ PN VT+N 
Sbjct: 300 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 359

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++  C  G ++ A    + M++ G+ P  S YN L+    + GR+  A ++   M   G
Sbjct: 360 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKG 419

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + D  +Y ILINGY +    + A  L++EMLSKGI PT VTY +
Sbjct: 420 IIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTS 464



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 53/119 (44%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN L     +    +    L   +   G+ PD  +YN LI+ + + G +   F 
Sbjct: 526 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFR 585

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           V   +L   F P  +T+ +LIK LC       A  L  ++   G  PD  TY +LI G+
Sbjct: 586 VRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 644


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 195/390 (50%), Gaps = 54/390 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILI 59
           +FD +LR       +   N     +A++     V S + R+   G   + PDL TY ILI
Sbjct: 37  VFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGADEVTPDLCTYGILI 94

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLRAFGC 118
            C C+ GR+  GF  LG +++  F  +A+TFT L+KGLCA+ R  +A  +   ++   GC
Sbjct: 95  GCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGC 154

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG------------------------- 153
            P+VF+Y  L+NGLC    +  AL L   MA+  G                         
Sbjct: 155 IPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDK 214

Query: 154 ---------EFGVVCKPDAITYSTITDGLCK------------EGFVDKAKELFLKMKDE 192
                    + G++  PD +TYS+I   LCK            EG V ++++LF  M   
Sbjct: 215 AYSTYHEMLDRGIL--PDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRI 272

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PD++TY++LI G+C A   +EA  L   M+  G++PN VT++ ++N  CK  +M++A
Sbjct: 273 GVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 332

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L + M   GV PD   YN ++ G   T R   AKEL+V +  +G   ++ +Y I+++G
Sbjct: 333 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 392

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            CKNK  + AL ++  +    ++    T+N
Sbjct: 393 LCKNKLTDDALQMFQNLCLMDLKLEARTFN 422



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 163/334 (48%), Gaps = 21/334 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL---NSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P V S+N L   L         L L   +      G  PD+ +Y  +IN F K G     
Sbjct: 156 PNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCA------------ESRIMEAAALFTKLRAFGCK 119
           +     +L     PD VT++S+I  LC             E R++E+  LF  +   G K
Sbjct: 216 YSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVK 275

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD+ TY+TLI+G C  G    A+ L   M +      V  KP+ +TYST+ +G CK   +
Sbjct: 276 PDIITYSTLIDGYCLAGKMDEAMKLLSGMVS------VGLKPNTVTYSTLINGYCKISRM 329

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           + A  LF +M+   ++PD++TY  +++G         AK L++ + + G Q  + T+N+I
Sbjct: 330 EDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNII 389

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LCKN   D+A ++ + +  + ++ +A  +N ++D     GR + AK+LFV+  SNG 
Sbjct: 390 LHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGL 449

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           + + ++Y ++         +E    L+  M   G
Sbjct: 450 VPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 483



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 18/270 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLS------------LFKRLNSIGLFPDLYTYNILINCF 62
           P V +++ +   L K +  D   S            LF  +  IG+ PD+ TY+ LI+ +
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 288

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G++     +L  ++     P+ VT+++LI G C  SR+ +A  LF ++ + G  PD+
Sbjct: 289 CLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDI 348

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  ++ GL +T  T  A  L+  +     +       +  TY+ I  GLCK    D A
Sbjct: 349 ITYNIILQGLFQTRRTAAAKELYVRITESGTQI------ELSTYNIILHGLCKNKLTDDA 402

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++F  +   ++  +  T+  +I         +EAK LF+     G+ PN  T+ ++   
Sbjct: 403 LQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAEN 462

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           +   G ++E  +L   M   G   D+ + N
Sbjct: 463 IIGQGLLEELDQLFLSMEDNGCTVDSGMLN 492



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 4/156 (2%)

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + + PD+ TY  LI   C A   +        ++ +G +   +TF  ++  LC + +  +
Sbjct: 81  DEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSD 140

Query: 252 ASRL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN---GCMRDVFSYG 307
           A  + L  M ++G  P+   YN L++G C   R   A EL   M  +   G   DV SY 
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT 200

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +ING+ K  + + A S Y EML +GI P VVTY++
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSS 236


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 169/329 (51%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N +          D    L   + ++ + PD YTYN LI   C  GR      V
Sbjct: 118 PDVMSYNAMVAGYCVTGQLDNARRL---VAAMPMEPDTYTYNTLIRGLCGRGRTDNALAV 174

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +LR    PD VT+T L++  C  S   +A  L  ++R  GC PD+ TY  ++NG+C+
Sbjct: 175 LDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQ 234

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+   + + +    +G  C+P+ ++Y+ +  GLC     + A++L  +M  +  
Sbjct: 235 EGRVDDAMEFLKSLPS----YG--CEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGR 288

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVT+  LI   C       A  +  ++   G  PN +++N I++  CK  KMD A  
Sbjct: 289 PPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 348

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            +ELM+  G  PD   YNTL+   C  G V+ A EL   ++  GC   + SY  +I+G  
Sbjct: 349 FVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLT 408

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  + E AL L +EM++KG++P ++TY+T
Sbjct: 409 KAGKTEEALELLNEMVTKGLQPDIITYST 437



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 178/363 (49%), Gaps = 30/363 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             + D MLR     P V ++ IL     K   Y   + L   +   G  PD+ TYN+++N
Sbjct: 172 LAVLDDMLR-RGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVN 230

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ GRV      L  +      P+ V++  ++KGLC   R  +A  L  ++   G  P
Sbjct: 231 GICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPP 290

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMA---------NGNGEFGVVCK----------- 160
           +V T+  LI+ LCR G    A+ + +++          + N      CK           
Sbjct: 291 NVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFV 350

Query: 161 ---------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    PD ++Y+T+   LC+ G VD A EL  ++KD+   P +++Y ++I G   A
Sbjct: 351 ELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKA 410

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
               EA  L  EM+ +G+QP+++T++ I + LC+ G+++EA +    +  +G+RP+  +Y
Sbjct: 411 GKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLY 470

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N ++ G C     + A +LF  M SNGCM +  +Y ILI G      ++ A  + +E+ S
Sbjct: 471 NAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCS 530

Query: 332 KGI 334
           +G+
Sbjct: 531 RGV 533



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 6/332 (1%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P  P   ++N L   L      D  L++   +   G  PD+ TY IL+   CK       
Sbjct: 147 PMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQA 206

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +L  +      PD VT+  ++ G+C E R+ +A      L ++GC+P+  +Y  ++ G
Sbjct: 207 VKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKG 266

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LC       A  L  EM+           P+ +T++ +   LC+ G V+ A E+  ++  
Sbjct: 267 LCTAERWEDAEKLMAEMSRKGR------PPNVVTFNMLISFLCRRGLVEPAMEILDQIPK 320

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               P+ ++Y  ++  FC     + A      M+  G  P++V++N ++  LC+ G++D 
Sbjct: 321 YGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDA 380

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  LL  +   G  P    YNT++DG    G+   A EL   M + G   D+ +Y  + +
Sbjct: 381 AVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISS 440

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G C+   IE A+  + ++   GIRP  V YN 
Sbjct: 441 GLCREGRIEEAIKAFCKVQDMGIRPNTVLYNA 472



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 142/314 (45%), Gaps = 66/314 (21%)

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF--------------------------- 123
            +LIK LCA  R  EA  +        C+PDV                            
Sbjct: 94  AALIKKLCASGRTAEARRVLAS-----CEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPM 148

Query: 124 -----TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-------------------- 158
                TY TLI GLC  G T  AL + ++M        VV                    
Sbjct: 149 EPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVK 208

Query: 159 ---------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
                    C PD +TY+ + +G+C+EG VD A E    +      P+ V+Y  +++G C
Sbjct: 209 LLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLC 268

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            A  W +A+ L  EM  +G  PNVVTFN++++ LC+ G ++ A  +L+ + + G  P++ 
Sbjct: 269 TAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSL 328

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            YN ++  FC   +++RA      M S+GC  D+ SY  L+   C+  E++ A+ L  ++
Sbjct: 329 SYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 388

Query: 330 LSKGIRPTVVTYNT 343
             KG  P +++YNT
Sbjct: 389 KDKGCTPVLISYNT 402



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 60/159 (37%), Gaps = 35/159 (22%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS----- 69
           P + S+N +   L K    +  L L   + + GL PD+ TY+ + +  C+ GR+      
Sbjct: 395 PVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKA 454

Query: 70  ----------PGFVVLGRIL------RSCFT--------------PDAVTFTSLIKGLCA 99
                     P  V+   IL      R+  +              P+  T+T LI+GL  
Sbjct: 455 FCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAY 514

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           E  + EA  +  +L + G           I  L  T HT
Sbjct: 515 EGLVKEAREMMAELCSRGVVSKTLVNKGAIRLLDGTMHT 553


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 179/372 (48%), Gaps = 30/372 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + ++  M RM+     + +FNI+   L K             + ++G+ P++ TYN +I+
Sbjct: 201 WVLYAEMFRMNIRSS-LYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIH 259

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  G+     V+   +      PD  T+ S I GLC E R+ EA+ L  K+   G  P
Sbjct: 260 GHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVP 319

Query: 121 DVFTYTTLINGLCRTGH------------------TIVALNLFEEMANGNGEFGVV---- 158
           +  TY  LI+G C  G                   ++V  NLF       G  G      
Sbjct: 320 NAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMI 379

Query: 159 -------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    PDA+T++ + +G C+ G   +A  L  +M  + I P +VTYTSLI      
Sbjct: 380 KEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKR 439

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N   EA  LF ++  +G+ P+++ FN +++  C NG +D A +LL+ M  + V PD   Y
Sbjct: 440 NRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITY 499

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           NTLM G+C  G+V  A++L   M+  G   D  SY  LI+GY K  +++ A  +  EM++
Sbjct: 500 NTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMT 559

Query: 332 KGIRPTVVTYNT 343
            G  PT++TYN 
Sbjct: 560 TGFDPTILTYNA 571



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 182/373 (48%), Gaps = 41/373 (10%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y+++     P + + N +     K         L+  +  + +   LYT+NI+IN  CK 
Sbjct: 170 YLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKE 229

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G++      +G +      P+ VT+ ++I G C   +   A  +F  ++  G +PD +TY
Sbjct: 230 GKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTY 289

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA--- 182
            + I+GLC+ G    A  L  +M  G    G+V  P+A+TY+ + DG C +G +DKA   
Sbjct: 290 NSFISGLCKEGRLEEASGLICKMLEG----GLV--PNAVTYNALIDGYCNKGDLDKAYAY 343

Query: 183 --------------------KELFL------------KMKDENINPDVVTYTSLIRGFCY 210
                                 LF+            +M+++ + PD VT+  LI G+C 
Sbjct: 344 RDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCR 403

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
             D   A  L  EM+ +G+QP +VT+  ++  L K  +M EA  L   + Q G+ PD  V
Sbjct: 404 CGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIV 463

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           +N L+DG C  G ++RA +L   M++   + D  +Y  L+ GYC+  ++E A  L  EM 
Sbjct: 464 FNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMK 523

Query: 331 SKGIRPTVVTYNT 343
            +GI+P  ++YNT
Sbjct: 524 RRGIKPDHISYNT 536



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 141/289 (48%), Gaps = 6/289 (2%)

Query: 55  YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR 114
           +++L+  +C++ + +        I    F P+  T   ++      +R   A  L+ ++ 
Sbjct: 149 FDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMF 208

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
               +  ++T+  +IN LC+ G    A      M       GV  KP+ +TY+TI  G C
Sbjct: 209 RMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMET----LGV--KPNVVTYNTIIHGHC 262

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
             G   +A+ +F  MKD+ + PD  TY S I G C      EA  L  +M++ G+ PN V
Sbjct: 263 LRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAV 322

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+N +++  C  G +D+A    + MI  G+      YN  +    + GR+  A  +   M
Sbjct: 323 TYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEM 382

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              G M D  ++ ILINGYC+  + + A  L  EM+ KGI+PT+VTY +
Sbjct: 383 REKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTS 431



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 161/372 (43%), Gaps = 66/372 (17%)

Query: 15  PPVCSFN-ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V ++N I+ G   + K +     +F+ +   GL PD YTYN  I+  CK GR+     
Sbjct: 249 PNVVTYNTIIHGHCLRGK-FQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASG 307

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLC----------------------------------- 98
           ++ ++L     P+AVT+ +LI G C                                   
Sbjct: 308 LICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALF 367

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA--------- 149
            E R+ +A  +  ++R  G  PD  T+  LING CR G    A  L +EM          
Sbjct: 368 MEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLV 427

Query: 150 ----------------NGNGEFGVVCK----PDAITYSTITDGLCKEGFVDKAKELFLKM 189
                             +  F  + +    PD I ++ + DG C  G +D+A +L  +M
Sbjct: 428 TYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEM 487

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            +  + PD +TY +L++G+C      EA+ L  EM  +G++P+ +++N +++   K G M
Sbjct: 488 DNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDM 547

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +A R+ + M+  G  P    YN L+ G C       A+EL   M S G   D  +Y  +
Sbjct: 548 KDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSI 607

Query: 310 INGYCKNKEIEG 321
           I       ++EG
Sbjct: 608 IEAMETVDDLEG 619



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 3/200 (1%)

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           +F+E+A        V     + +  +    C+    ++A E F  +K++   P++ T   
Sbjct: 130 IFDELALARDR---VDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQ 186

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           ++  F   N    A  L+ EM    ++ ++ TFN+++N LCK GK+ +A   +  M  +G
Sbjct: 187 MLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLG 246

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           V+P+   YNT++ G CL G+  RA+ +F +M+  G   D ++Y   I+G CK   +E A 
Sbjct: 247 VKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEAS 306

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            L  +ML  G+ P  VTYN 
Sbjct: 307 GLICKMLEGGLVPNAVTYNA 326


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 168/335 (50%), Gaps = 11/335 (3%)

Query: 13  SPP--PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           SPP  P CS   L   L K + YD V+S++ ++ S  + P   + + L   F      S 
Sbjct: 38  SPPSEPACS--TLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSF 95

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCK-PDVFTYTTL 128
            F VL  + +  F  +      ++KG C   +  +A +LF+++ R + C  PD  TY TL
Sbjct: 96  AFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTL 155

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           +NG C+      A  LFE M  G       C+P+ +TYS + D  CK G V +   L  +
Sbjct: 156 VNGFCKAKRLAEARVLFEAMKKGGD-----CRPNLVTYSVLIDCYCKSGEVGEGLGLLEE 210

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M+ E +  DV  Y+SLI  FC   D    + LF EM+ + V PNVVT++ +M  L + G+
Sbjct: 211 MEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGR 270

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
             EAS +L+ M   GVRPD   Y  L DG C  GR   A ++   M   G      +Y +
Sbjct: 271 WREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNV 330

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++NG CK   ++ A  +   M+ KG +P  VTYNT
Sbjct: 331 VVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNT 365



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 184/343 (53%), Gaps = 8/343 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M +     P + ++++L  C  K+      L L + +   GL  D++ Y+ LI+ F
Sbjct: 171 LFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAF 230

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +  G  +   +LR   +P+ VT++ L++GL    R  EA+ +   + A G +PDV
Sbjct: 231 CGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDV 290

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YT L +GLC+ G    A+ + + M     E      P  +TY+ + +GLCKE  +D A
Sbjct: 291 VAYTVLADGLCKNGRAGDAIKVLDLMVQKGEE------PGTLTYNVVVNGLCKEDRMDDA 344

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG--VQPNVVTFNVIM 240
             +   M  +   PD VTY +L++G C A   +EA  L+  ++ +   V+P+V T N ++
Sbjct: 345 FGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLI 404

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LCK G++ +A+R+   M+++G++ +   YN L++G+    ++  A +L+     +G  
Sbjct: 405 QGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFS 464

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  +Y ++ING CK + +  A  L+ +M   GIRPTV+ YN 
Sbjct: 465 PNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNA 507



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 171/340 (50%), Gaps = 5/340 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD MLR   SP  V +++ L   L +   +     + K + + G+ PD+  Y +L +  
Sbjct: 242 LFDEMLRRKVSPN-VVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGL 300

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR      VL  +++    P  +T+  ++ GLC E R+ +A  +   +   G KPD 
Sbjct: 301 CKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDA 360

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY TL+ GLC  G    A++L++ + +   +F V  KPD  T + +  GLCKEG V  A
Sbjct: 361 VTYNTLLKGLCGAGKIHEAMDLWKLLLSE--KFHV--KPDVFTCNNLIQGLCKEGRVHDA 416

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +   M +  +  ++VTY  LI G+  A    EA  L+   ++ G  PN +T++V++N 
Sbjct: 417 ARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMING 476

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK   +  A  L   M   G+RP    YN LM   C    + +A+ LF  M +     D
Sbjct: 477 LCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVD 536

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           V S+ I+I+G  K  +++ A  L SEM    + P  VT++
Sbjct: 537 VVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFS 576



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 168/331 (50%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   L KN      + +   +   G  P   TYN+++N  CK  R+   F V
Sbjct: 288 PDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGV 347

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGL 132
           +  +++    PDAVT+ +L+KGLC   +I EA  L+  L    F  KPDVFT   LI GL
Sbjct: 348 VEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGL 407

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A  +   M     E G+  + + +TY+ + +G      + +A +L+    + 
Sbjct: 408 CKEGRVHDAARIHSSMV----EMGL--QGNIVTYNFLIEGYLAARKLIEALKLWKYAVES 461

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
             +P+ +TY+ +I G C     + A+ LF +M D G++P V+ +N +M  LC+   +++A
Sbjct: 462 GFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQA 521

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L + M  +    D   +N ++DG    G V  AKEL   M     + D  ++ ILIN 
Sbjct: 522 RSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINR 581

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + K   ++ A+ LY +M+S G  P VV +++
Sbjct: 582 FSKLGMLDEAMGLYEKMVSCGHVPGVVVFDS 612


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 177/329 (53%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ L    A     +    L   ++  G+ PD++ YN +I+C  K G++      
Sbjct: 382 PNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 441

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  I      PDAVTF + I G     ++ EAA  F ++   G  P+   YT LING  +
Sbjct: 442 LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFK 501

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+ + AL++F  +       GV+  PD  T S    GL K G V +A ++F ++K++ +
Sbjct: 502 AGNLMEALSIFRHLH----ALGVL--PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGL 555

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TY+SLI GFC   +  +A  L  EM  +G+ PN+  +N +++ LCK+G +  A +
Sbjct: 556 VPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARK 615

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M + G+ PD+  Y+T++DG+C +  V  A  LF  M S G     F Y  L++G C
Sbjct: 616 LFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCC 675

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++E A++L+ EML KG   T +++NT
Sbjct: 676 KEGDMEKAMNLFREMLQKGF-ATTLSFNT 703



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 161/330 (48%), Gaps = 6/330 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  + ++N+L   L K    +    + K + ++G  P+  T+ +LI  +C+   +     
Sbjct: 276 PINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALE 335

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  + +    P AV++ ++I GLC    +  A  L  K+   G KP+V  Y+TLI G  
Sbjct: 336 LLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYA 395

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A  L + M+      GV   PD   Y+ I   L K G +++A    L+++   
Sbjct: 396 SEGRIEEARRLLDGMSCS----GVA--PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRG 449

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VT+ + I G+       EA   F EM+D G+ PN   + V++N   K G + EA 
Sbjct: 450 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEAL 509

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +   +  +GV PD    +  + G    GRV  A ++F  ++  G + DVF+Y  LI+G+
Sbjct: 510 SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 569

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK  E+E A  L+ EM  KGI P +  YN 
Sbjct: 570 CKQGEVEKAFELHDEMCLKGIAPNIFIYNA 599



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 166/364 (45%), Gaps = 42/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + +     L KN      L +F  L   GL PD++TY+ LI+ FCK G V   F +
Sbjct: 522 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL 581

Query: 75  L-------------------------GRILRS----------CFTPDAVTFTSLIKGLCA 99
                                     G I R+             PD+VT++++I G C 
Sbjct: 582 HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCK 641

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
              + EA +LF ++ + G +P  F Y  L++G C+ G    A+NLF EM      F    
Sbjct: 642 SENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG--FATT- 698

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
               ++++T+ DG CK   + +A +LF +M  + I PD VTYT++I   C A    EA  
Sbjct: 699 ----LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANL 754

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           LF EM ++ +  + VT+  +M    K G+  E   L E M+  GV+PD   Y  ++   C
Sbjct: 755 LFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHC 814

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
               +  A +L   +   G +     + +LI   CK +++  A  L  EM   G++P++ 
Sbjct: 815 KEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLA 874

Query: 340 TYNT 343
             +T
Sbjct: 875 ACST 878



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 159/322 (49%), Gaps = 17/322 (5%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSI------GLFPDLYTYNILINCFCKMGRVSPGFVV 74
           N+ F  +AKN   D++L    R NS+      GL P+ YTY I+    C+  R++   + 
Sbjct: 177 NVFF--VAKN---DSILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLT 231

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + ++   PD    ++LI G   E  I E   +   + + G   ++ TY  LI+GLC+
Sbjct: 232 FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK 291

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + +      G   + CKP++ T+  + +G C+E  + +A EL  +M+  N+
Sbjct: 292 FGKMEKAAEILK------GMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNL 345

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P  V+Y ++I G C+  D + A  L  +M   G++PNVV ++ ++      G+++EA R
Sbjct: 346 VPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARR 405

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M   GV PD   YN ++      G++  A    + ++  G   D  ++G  I GY 
Sbjct: 406 LLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYS 465

Query: 315 KNKEIEGALSLYSEMLSKGIRP 336
           K  ++  A   + EML  G+ P
Sbjct: 466 KTGKMTEAAKYFDEMLDHGLMP 487



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 139/268 (51%), Gaps = 19/268 (7%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
            T +I+   + S I+++  LF      G  P VF    LI+   R G    A N+F    
Sbjct: 127 LTQMIRTPYSSSSILDSV-LFWFRNYGGSSPVVFD--ILIDSYKRMGMLDEAANVFFVAK 183

Query: 150 NGN--------------GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           N +              GE G+V  P+  TY+ IT GLC+   +++AK  F +M+   + 
Sbjct: 184 NDSILISLIRCNSLRSMGEKGLV--PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK 241

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PD    ++LI GF    D +E   +   M+  G+  N++T+NV+++ LCK GKM++A+ +
Sbjct: 242 PDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEI 301

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           L+ MI +G +P++  +  L++G+C    + RA EL   ME    +    SYG +ING C 
Sbjct: 302 LKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCH 361

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K++  A  L  +M   G++P VV Y+T
Sbjct: 362 CKDLSLANKLLEKMTFSGLKPNVVVYST 389



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 118/267 (44%), Gaps = 44/267 (16%)

Query: 113 LRAFGCK---PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           LR+ G K   P+ +TYT +  GLCR      A   FEEM           KPD    S +
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTG------LKPDYNACSAL 250

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK----------- 218
            DG  +EG +D+   +   M    I  +++TY  LI G C      +A            
Sbjct: 251 IDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGC 310

Query: 219 -------CLFI-----------------EMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
                  CL I                 EM  + + P+ V++  ++N LC    +  A++
Sbjct: 311 KPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANK 370

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE M   G++P+  VY+TL+ G+   GR+  A+ L   M  +G   D+F Y  +I+   
Sbjct: 371 LLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 430

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K  ++E A +   E+  +G++P  VT+
Sbjct: 431 KAGKMEEASTYLLEIQGRGLKPDAVTF 457


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 183/349 (52%), Gaps = 18/349 (5%)

Query: 1   FCIFDYMLRMHPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
             + D M R   +P PP+    +   C A    +   + + + L+  G   D+   N+++
Sbjct: 131 LAVLDDMARRGCAPTPPMYHVTLEAACRASG--FRGAVGVLRDLHGRGCALDVGNCNLVL 188

Query: 60  NCFCKMGRVSPGFVVLGRILRS--CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
              C  G V     +L  +L S  C  PD V++ ++++GLC   R      L  ++ A G
Sbjct: 189 QAVCDQGPVDEAVRLLRDLLPSFGC-EPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAG 247

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFE---EMANGNGEFGVVCKPDAITYSTITDGLC 174
           C P++ T++TLI  LCR G       LFE   E+     E G  C PD   Y+TI DG+C
Sbjct: 248 CPPNIVTFSTLIGHLCRNG-------LFERVHEVHAQMAEHG--CAPDVRMYATIIDGVC 298

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           KE  ++ A+ +  +M    ++P+VV Y +L++G C A+ W EA+ L  EM D+    + V
Sbjct: 299 KEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDV 358

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           TFN++++ LC+NG +D    +LE M++ G  PD   Y T+++GFC  G ++ A  L  SM
Sbjct: 359 TFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSM 418

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + GC  +  SY I++ G C  +    A  L S+M+ +G  P  VT+NT
Sbjct: 419 AACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNT 467



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 166/330 (50%), Gaps = 6/330 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +F+ L G L +N  ++ V  +  ++   G  PD+  Y  +I+  CK  R+     
Sbjct: 249 PPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARG 308

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R+     +P+ V + +L+KGLC+  R  EA  L  ++    C  D  T+  L++ LC
Sbjct: 309 ILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLC 368

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G     + + E+M     E G  C PD ITY+T+ +G CKEG +D+A  L   M    
Sbjct: 369 QNGLVDRVIEVLEQML----EHG--CMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACG 422

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+ V+YT +++G C A  W +A+ L  +M+ QG  PN VTFN ++N LCK G +++A 
Sbjct: 423 CRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 482

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL+ M+  G  PD   Y+T++DG    G  + A EL   M   G   +   Y  + +  
Sbjct: 483 ELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASAL 542

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                I   + ++  +    +R   V YN 
Sbjct: 543 SGEGRINKVIQMFENIQDTTVRSDAVLYNA 572



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 165/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N +   L   + +  V  L + + + G  P++ T++ LI   C+ G       V
Sbjct: 215 PDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEV 274

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++      PD   + ++I G+C E R+  A  +  ++ ++G  P+V  Y TL+ GLC 
Sbjct: 275 HAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCS 334

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L  EM      F   C  D +T++ + D LC+ G VD+  E+  +M +   
Sbjct: 335 ADRWEEAEGLLAEM------FDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGC 388

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+TYT++I GFC     +EA  L   M   G +PN V++ +++  LC   +  +A  
Sbjct: 389 MPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEE 448

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  MIQ G  P+   +NTL++  C  G V +A EL   M  NGC  D+ SY  +I+G  
Sbjct: 449 LMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 508

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K    + AL L + M+ KG+ P  + Y++
Sbjct: 509 KAGNTDEALELLNVMVKKGMSPNTIIYSS 537



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 169/331 (51%), Gaps = 7/331 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I + M     SP  VC +N L   L     ++    L   +       D  T+NIL++  
Sbjct: 309 ILNRMPSYGLSPNVVC-YNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFL 367

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G V     VL ++L     PD +T+T++I G C E  I EA  L   + A GC+P+ 
Sbjct: 368 CQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNT 427

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +YT ++ GLC     + A  L  +M          C P+ +T++T+ + LCK+G V++A
Sbjct: 428 VSYTIVLKGLCSAERWVDAEELMSQMIQQG------CPPNPVTFNTLINFLCKKGLVEQA 481

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL  +M     +PD+++Y+++I G   A + +EA  L   M+ +G+ PN + ++ I + 
Sbjct: 482 IELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASA 541

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L   G++++  ++ E +    VR DA +YN ++   C  G  +RA E    M S+GC+ +
Sbjct: 542 LSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPN 601

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
             +Y ILI G      ++ A  + +E+ SKG
Sbjct: 602 ESTYTILIRGLASEGFVKEAQEILTELCSKG 632



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 150/284 (52%), Gaps = 8/284 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FNIL   L +N   D V+ + +++   G  PD+ TY  +IN FCK G +    ++L  +
Sbjct: 359 TFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSM 418

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ V++T ++KGLC+  R ++A  L +++   GC P+  T+ TLIN LC+ G  
Sbjct: 419 AACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 478

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A+ L ++M  NG       C PD I+YST+ DGL K G  D+A EL   M  + ++P+
Sbjct: 479 EQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPN 531

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + Y+S+          N+   +F  + D  V+ + V +N +++ LCK G+ D A   L 
Sbjct: 532 TIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLA 591

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            M+  G  P+ S Y  L+ G    G V  A+E+   + S G +R
Sbjct: 592 YMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKGALR 635



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 121/315 (38%), Gaps = 65/315 (20%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV--------- 140
            ++LI+ LCA  R  EAA   +          V  Y  ++ G CR G             
Sbjct: 50  LSALIRSLCAAGRTAEAARALSAAGGGA---GVVAYNAMVAGYCRAGQLAAARRLAASVP 106

Query: 141 -----------------------ALNLFEEMANG----------------------NGEF 155
                                  AL + ++MA                         G  
Sbjct: 107 VAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAV 166

Query: 156 GVV-------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-NINPDVVTYTSLIRG 207
           GV+       C  D    + +   +C +G VD+A  L   +       PDVV+Y +++RG
Sbjct: 167 GVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRG 226

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C A  W   + L  EM+  G  PN+VTF+ ++  LC+NG  +    +   M + G  PD
Sbjct: 227 LCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPD 286

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
             +Y T++DG C   R+  A+ +   M S G   +V  Y  L+ G C     E A  L +
Sbjct: 287 VRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLA 346

Query: 328 EMLSKGIRPTVVTYN 342
           EM  K      VT+N
Sbjct: 347 EMFDKDCPLDDVTFN 361


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 181/372 (48%), Gaps = 53/372 (14%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF  M+ M   P     + ++ G L K    D   S F+++   G  PD  TY +L++  
Sbjct: 36  IFHQMIDMKVKPDAFL-YTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSL 94

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K  +   G  +   +L    +P+ VT+ +++ G C   RI +A +L  +L+  G  P  
Sbjct: 95  FKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSG 154

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+TLI+GLC+      A  LFE MA G+ +       D I Y++   GLCK G +D+A
Sbjct: 155 SLYSTLIDGLCKHDRHEEARELFE-MAAGDVQ-------DVIVYTSFISGLCKAGKLDEA 206

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ------------ 230
           K + +KM +    PD V+Y  +I   C  N  +EAK    E+MDQ ++            
Sbjct: 207 KAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAK----ELMDQAMERKCMPGVPVCTV 262

Query: 231 ----------------------------PNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
                                       P+VVT++ +++ LCK  ++D+A  +L+ M + 
Sbjct: 263 LVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRA 322

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G  PD   Y  ++D FC  GR++ A+ELF  M   GC  DV +Y ILI GYC+  +++ A
Sbjct: 323 GCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEA 382

Query: 323 LSLYSEMLSKGI 334
           +++  EM  +GI
Sbjct: 383 IAMIEEMAGRGI 394



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 175/364 (48%), Gaps = 44/364 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L +    +  L +F ++  + + PD + Y ++I   CK+ ++      
Sbjct: 12  PTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASY 71

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++++S   PD VT+T L+  L    +  +   +F ++ + G  P++ TY T++NG C+
Sbjct: 72  FEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCK 131

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL+L   +  G G       P    YST+ DGLCK    ++A+ELF +M   ++
Sbjct: 132 AGRIDQALSLMRRL-KGTGR-----SPSGSLYSTLIDGLCKHDRHEEARELF-EMAAGDV 184

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             DV+ YTS I G C A   +EAK + ++M++ G  P+ V++NVI+  LCK+ ++ EA  
Sbjct: 185 Q-DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKE 243

Query: 255 L-----------------------------------LELMIQIGVR-PDASVYNTLMDGF 278
           L                                   LE M++ G R P    Y+ ++DG 
Sbjct: 244 LMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGL 303

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   R++ A  +   M   GC+ DV +Y  +I+ +CK   ++ A  L+  M  +G    V
Sbjct: 304 CKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDV 363

Query: 339 VTYN 342
           V YN
Sbjct: 364 VAYN 367



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 158/307 (51%), Gaps = 11/307 (3%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           L   + + G+ P + T+  LI   C++   +    +  +++     PDA  +T +I  LC
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGV 157
             +++  AA+ F ++   GC PD  TYT L++ L +         +FEEM + G+     
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHS---- 116

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              P+ +TY+T+ +G CK G +D+A  L  ++K    +P    Y++LI G C  +   EA
Sbjct: 117 ---PELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEA 173

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           + LF EM    VQ +V+ +   ++ LCK GK+DEA  +   MI+ G  PD   YN ++  
Sbjct: 174 RELF-EMAAGDVQ-DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYS 231

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR-P 336
            C   RV+ AKEL        CM  V    +L++G CK++ +E A  +   ML  G R P
Sbjct: 232 LCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAP 291

Query: 337 TVVTYNT 343
           +VVTY+ 
Sbjct: 292 SVVTYSA 298


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 173/337 (51%), Gaps = 10/337 (2%)

Query: 9   RMHPSPPPVC--SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +M  S   +C  +FN L   L K         L  ++   G+ P+L+TYN  I   C+ G
Sbjct: 206 KMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKG 265

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     ++GR++     PD VT+  LI GLC  S+  EA     KL   G +PD FTY 
Sbjct: 266 ELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYN 325

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           TLI G C+ G   +A  +       N  F G V  PD  TY ++ DGLC EG  ++A  L
Sbjct: 326 TLIAGYCKGGMVQLAERILV-----NAVFNGFV--PDEFTYRSLIDGLCHEGETNRALAL 378

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F +   + I P+V+ Y +LI+G        EA  L  EM ++G+ P V TFN+++N LCK
Sbjct: 379 FNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCK 438

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G + +A  L+++MI  G  PD   +N L+ G+    ++  A E+   M  NG   DV++
Sbjct: 439 MGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYT 498

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           Y  L+NG CK  + E  +  Y  M+ KG  P + T+N
Sbjct: 499 YNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFN 535



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 163/315 (51%), Gaps = 6/315 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L KN  +        +L + GL PD +TYN LI  +CK G V     +
Sbjct: 284 PDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERI 343

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   + + F PD  T+ SLI GLC E     A ALF +    G KP+V  Y TLI GL  
Sbjct: 344 LVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSN 403

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  L  EM+    E G++  P+  T++ + +GLCK G V  A  L   M  +  
Sbjct: 404 QGLILEAAQLASEMS----EKGLI--PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGY 457

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ T+  LI G+        A  +   MMD GV P+V T+N ++N LCK  K ++   
Sbjct: 458 FPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVME 517

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + M++ G  P+   +N L++  C   ++++A  L   M++     D  ++G LI+G+C
Sbjct: 518 TYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFC 577

Query: 315 KNKEIEGALSLYSEM 329
           KN +++GA +L+ +M
Sbjct: 578 KNGDLDGAYTLFRKM 592



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 166/331 (50%), Gaps = 11/331 (3%)

Query: 18  CSFNILFGCLAKNKHY-----DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           C  N++  C      Y     D    LF ++ + G+   L T+N L++  CK G V    
Sbjct: 177 CEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECE 236

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L ++++    P+  T+   I+GLC +  +  A  +  +L   G KPDV TY  LI GL
Sbjct: 237 KLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGL 296

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+      A     ++ N   E      PD+ TY+T+  G CK G V  A+ + +     
Sbjct: 297 CKNSKFQEAEVYLGKLVNEGLE------PDSFTYNTLIAGYCKGGMVQLAERILVNAVFN 350

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              PD  TY SLI G C+  + N A  LF E + +G++PNV+ +N ++  L   G + EA
Sbjct: 351 GFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEA 410

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L   M + G+ P+   +N L++G C  G V+ A  L   M S G   D+F++ ILI+G
Sbjct: 411 AQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y    ++E AL +   M+  G+ P V TYN+
Sbjct: 471 YSTQLKMENALEILDVMMDNGVDPDVYTYNS 501



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 161/309 (52%), Gaps = 8/309 (2%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            +++F+R++     P +++YN +++     G       V  R+     TPD  +FT  +K
Sbjct: 95  AVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMK 154

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGE 154
             C  SR   A  L   + + GC+ +V  Y T++ G            LF +M A+G   
Sbjct: 155 SFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVS- 213

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
              +C     T++ +   LCK+G V + ++L  K+    + P++ TY   I+G C   + 
Sbjct: 214 ---LCLS---TFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGEL 267

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           + A  +   ++DQG +P+VVT+N ++  LCKN K  EA   L  ++  G+ PD+  YNTL
Sbjct: 268 DAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTL 327

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + G+C  G V  A+ + V+   NG + D F+Y  LI+G C   E   AL+L++E L KGI
Sbjct: 328 IAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGI 387

Query: 335 RPTVVTYNT 343
           +P V+ YNT
Sbjct: 388 KPNVILYNT 396



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 163/326 (50%), Gaps = 7/326 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   L+          L   ++  GL P++ T+NIL+N  CKMG VS    +
Sbjct: 389 PNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGL 448

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++   + PD  TF  LI G   + ++  A  +   +   G  PDV+TY +L+NGLC+
Sbjct: 449 VKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCK 508

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T      +  ++ M          C P+  T++ + + LC+   +DKA  L  +MK++++
Sbjct: 509 TSKYEDVMETYKTMVEKG------CAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSV 562

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD-QGVQPNVVTFNVIMNELCKNGKMDEAS 253
           NPD VT+ +LI GFC   D + A  LF +M +   V  +  T+N+I++   +   +  A 
Sbjct: 563 NPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAE 622

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L + M+   + PD   Y  ++DGFC TG V+   +  + M  NG +  + + G +IN  
Sbjct: 623 KLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCL 682

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVV 339
           C    +  A  +   M+ KG+ P  V
Sbjct: 683 CVEDRVYEAAGIIHRMVQKGLVPEAV 708



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 138/298 (46%), Gaps = 44/298 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FNIL   L K         L K + S G FPD++T+NILI+ +    ++     +
Sbjct: 424 PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   PD  T+ SL+ GLC  S+  +    +  +   GC P++FT+  L+  LCR
Sbjct: 484 LDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCR 543

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK---- 190
                 AL L EEM N +        PDA+T+ T+ DG CK G +D A  LF KM+    
Sbjct: 544 YHKLDKALGLLEEMKNKS------VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYM 597

Query: 191 --------------------------------DENINPDVVTYTSLIRGFCYANDWNEAK 218
                                           D  + PD  TY  ++ GFC   + +   
Sbjct: 598 VSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGY 657

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
              +EMM+ G  P++ T   ++N LC   ++ EA+ ++  M+Q G+ P+A   NT+ D
Sbjct: 658 KFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEA--VNTIFD 713



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 108/240 (45%), Gaps = 6/240 (2%)

Query: 104 MEAAALFTKLRAF-GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           M+A  +F  +R   G K  + TY ++I  L   G       +  +M    G   +     
Sbjct: 21  MKALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHML----- 75

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
              Y        ++G V +A  +F +M   +  P V +Y +++     +  +++A  +++
Sbjct: 76  EGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYM 135

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
            M D+G+ P+V +F + M   C+  +   A RLL  M   G   +   Y T++ GF    
Sbjct: 136 RMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEEN 195

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +   ELF  M ++G    + ++  L++  CK  +++    L  +++ +G+ P + TYN
Sbjct: 196 FKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYN 255



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 181 KAKELFLKMKDEN-INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV--TFN 237
           KA E+F  M+ E+     + TY S+I        +   + + ++M  Q V  +++   + 
Sbjct: 22  KALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMR-QNVGNHMLEGVYV 80

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
             M    + GK+ EA  + E M      P    YN +M     +G  ++A ++++ M   
Sbjct: 81  GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDR 140

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   DV+S+ I +  +C+      AL L + M S+G    VV Y T
Sbjct: 141 GITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCT 186


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 177/329 (53%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ L    A     +    L   ++  G+ PD++ YN +I+C  K G++      
Sbjct: 183 PNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 242

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  I      PDAVTF + I G     ++ EAA  F ++   G  P+   YT LING  +
Sbjct: 243 LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFK 302

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+ + AL++F  +       GV+  PD  T S    GL K G V +A ++F ++K++ +
Sbjct: 303 AGNLMEALSIFRHLH----ALGVL--PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGL 356

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TY+SLI GFC   +  +A  L  EM  +G+ PN+  +N +++ LCK+G +  A +
Sbjct: 357 VPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARK 416

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M + G+ PD+  Y+T++DG+C +  V  A  LF  M S G     F Y  L++G C
Sbjct: 417 LFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCC 476

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++E A++L+ EML KG   T +++NT
Sbjct: 477 KEGDMEKAMNLFREMLQKGF-ATTLSFNT 504



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 161/330 (48%), Gaps = 6/330 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  + ++N+L   L K    +    + K + ++G  P+  T+ +LI  +C+   +     
Sbjct: 77  PINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALE 136

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  + +    P AV++ ++I GLC    +  A  L  K+   G KP+V  Y+TLI G  
Sbjct: 137 LLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYA 196

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A  L + M+      GV   PD   Y+ I   L K G +++A    L+++   
Sbjct: 197 SEGRIEEARRLLDGMSCS----GVA--PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRG 250

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VT+ + I G+       EA   F EM+D G+ PN   + V++N   K G + EA 
Sbjct: 251 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEAL 310

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +   +  +GV PD    +  + G    GRV  A ++F  ++  G + DVF+Y  LI+G+
Sbjct: 311 SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 370

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK  E+E A  L+ EM  KGI P +  YN 
Sbjct: 371 CKQGEVEKAFELHDEMCLKGIAPNIFIYNA 400



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 165/346 (47%), Gaps = 24/346 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + +     L KN      L +F  L   GL PD++TY+ LI+ FCK G V   F +
Sbjct: 323 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL 382

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+   + +L+ GLC    I  A  LF  +   G +PD  TY+T+I+G C+
Sbjct: 383 HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCK 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           + +   A +LF EM +         +P +  Y+ +  G CKEG ++KA  LF +M  +  
Sbjct: 443 SENVAEAFSLFHEMPSKG------VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 496

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS- 253
               +++ +LI G+C +    EA  LF EM+ + + P+ VT+  +++  CK GKM+EA+ 
Sbjct: 497 -ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANL 555

Query: 254 ----------------RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
                            L E M+  GV+PD   Y  ++   C    +  A +L   +   
Sbjct: 556 LFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGK 615

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G +     + +LI   CK +++  A  L  EM   G++P++   +T
Sbjct: 616 GMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACST 661



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 144/290 (49%), Gaps = 6/290 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           GL P+ YTY I+    C+  R++   +    + ++   PD    ++LI G   E  I E 
Sbjct: 5   GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 64

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +   + + G   ++ TY  LI+GLC+ G    A  + +      G   + CKP++ T+
Sbjct: 65  LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILK------GMITLGCKPNSRTF 118

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
             + +G C+E  + +A EL  +M+  N+ P  V+Y ++I G C+  D + A  L  +M  
Sbjct: 119 CLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTF 178

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G++PNVV ++ ++      G+++EA RLL+ M   GV PD   YN ++      G++  
Sbjct: 179 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEE 238

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           A    + ++  G   D  ++G  I GY K  ++  A   + EML  G+ P
Sbjct: 239 ASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 288



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 112/191 (58%), Gaps = 2/191 (1%)

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
           GE G+V  P+  TY+ IT GLC+   +++AK  F +M+   + PD    ++LI GF    
Sbjct: 2   GEKGLV--PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREG 59

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           D +E   +   M+  G+  N++T+NV+++ LCK GKM++A+ +L+ MI +G +P++  + 
Sbjct: 60  DIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFC 119

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L++G+C    + RA EL   ME    +    SYG +ING C  K++  A  L  +M   
Sbjct: 120 LLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFS 179

Query: 333 GIRPTVVTYNT 343
           G++P VV Y+T
Sbjct: 180 GLKPNVVVYST 190



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 114/262 (43%), Gaps = 41/262 (15%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G  P+ +TYT +  GLCR      A   FEEM           KPD    S + DG  +E
Sbjct: 5   GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTG------LKPDYNACSALIDGFMRE 58

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK------------------ 218
           G +D+   +   M    I  +++TY  LI G C      +A                   
Sbjct: 59  GDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF 118

Query: 219 CLFI-----------------EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           CL I                 EM  + + P+ V++  ++N LC    +  A++LLE M  
Sbjct: 119 CLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTF 178

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G++P+  VY+TL+ G+   GR+  A+ L   M  +G   D+F Y  +I+   K  ++E 
Sbjct: 179 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEE 238

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A +   E+  +G++P  VT+  
Sbjct: 239 ASTYLLEIQGRGLKPDAVTFGA 260



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 83/155 (53%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M ++ + P+  TYT +  G C A   NEAK  F EM   G++P+    + +++   + G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +DE  R+ ++M+  G+  +   YN L+ G C  G++ +A E+   M + GC  +  ++ +
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LI GYC+   +  AL L  EM  + + P+ V+Y  
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA 155


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 161/295 (54%), Gaps = 8/295 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD++ YN +I+ FCK+ ++     VL R+    F PD VT+  +I  LC   ++  A  +
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTV 204

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYST 168
             +L    C P V TYT LI      G    A+ L EEM A G         PD  TY+ 
Sbjct: 205 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG-------LLPDMYTYNA 257

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           I  G+CKEG V++A EL   +  +   PDV++Y  L+R F     W+E + L  EM  +G
Sbjct: 258 IIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 317

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
            +PN VT++++++ LC+ G++DEA  +L++MI+  + PD   Y+ L+   C  GR++ A 
Sbjct: 318 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAI 377

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +   M SNGC+ D+ +Y  ++   CKN     AL +++++   G  P V +YNT
Sbjct: 378 GIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNT 432



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 160/328 (48%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NI+ G L   +     L++  +L      P + TY ILI      G ++    +
Sbjct: 180 PDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKL 239

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD  T+ ++I+G+C E  +  AA L T L + GC+PDV +Y  L+     
Sbjct: 240 LEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLN 299

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L  EM      F   C+P+ +TYS +   LC+ G +D+A  +   M ++ +
Sbjct: 300 QGKWDEGEKLVAEM------FSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKEL 353

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  +Y  LI   C     + A  +   M+  G  P++V +N I+  LCKNG  ++A  
Sbjct: 354 TPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 413

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   +  +G  P+ S YNT++      G  +RA  +  +M S G   D  +Y  LI+  C
Sbjct: 414 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLC 473

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  +E A+ L  +M   G RPTV++YN
Sbjct: 474 RDGLVEEAIGLLDDMEQSGFRPTVISYN 501



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 12/318 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   + K    +    L   L S G  PD+ +YNIL+  F   G+   G  +
Sbjct: 250 PDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKL 309

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      P+ VT++ LI  LC   RI EA ++   +      PD ++Y  LI+ LC+
Sbjct: 310 VAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 369

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G   +A+ + + M +NG       C PD + Y+TI   LCK G  ++A E+F K++   
Sbjct: 370 EGRLDLAIGIMDYMISNG-------CLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG 422

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+V +Y ++I       D + A  +   M+ +G+ P+ +T+N +++ LC++G ++EA 
Sbjct: 423 CPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAI 482

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL+ M Q G RP    YN ++ G C   R++ A  +F  M   GC  +  +Y +LI G 
Sbjct: 483 GLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI 542

Query: 314 ----CKNKEIEGALSLYS 327
                + + +E A SL+S
Sbjct: 543 GFAGWRTEAMELANSLFS 560



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 123/285 (43%), Gaps = 42/285 (14%)

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           L+N  CK G+ +     L  ++   +TPD +  T LIKG      I +A+ +   L +  
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILES-- 141

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
                              HT                     +PD   Y+ +  G CK  
Sbjct: 142 -------------------HT---------------------EPDVFAYNAVISGFCKVN 161

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            ++ A ++  +MK     PD+VTY  +I   C       A  +  +++     P V+T+ 
Sbjct: 162 QIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYT 221

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           +++      G ++EA +LLE M+  G+ PD   YN ++ G C  G V RA EL  S+ S 
Sbjct: 222 ILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSK 281

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           GC  DV SY IL+  +    + +    L +EM S+G  P  VTY+
Sbjct: 282 GCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYS 326



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR    PP V S+N +   L         L +   + S G+ PD  TYN LI+C C+ G 
Sbjct: 418 LRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGL 477

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +L  + +S F P  +++  ++ GLC   RI +A  +F ++   GC+P+  TY  
Sbjct: 478 VEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYIL 537

Query: 128 LINGLCRTGHTIVALNL 144
           LI G+   G    A+ L
Sbjct: 538 LIEGIGFAGWRTEAMEL 554


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 176/341 (51%), Gaps = 19/341 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +         +     L + +    + PD+ T++ LIN F K G+VS    +
Sbjct: 113 PNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEEL 172

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +LR    P  +T++S+I G C  SR+ +A  +F  + + GC PD+ T  TLI+G CR
Sbjct: 173 YREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCR 232

Query: 135 T-----------GHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
                       G+  VA +LF+EM +NG         PD +T +T+  GLC+ G ++KA
Sbjct: 233 AKRHLIHGFCQVGNVNVAQDLFQEMISNG-------VSPDIVTCNTLLAGLCENGKLEKA 285

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+F   +   ++ D  T   +I G C  N  +EA  LF  +   GV+ +VVT+N+++  
Sbjct: 286 LEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGV 345

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K G    A  +   M+  G+ P    YN+++DGFC   R+  A+++  SM S GC  D
Sbjct: 346 FVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPD 405

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V ++  LI GYCK   ++  L L+SEM  +G+    +TYN 
Sbjct: 406 VVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNA 446



 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 98/270 (36%), Positives = 156/270 (57%), Gaps = 17/270 (6%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
            + VTFT+L+ GLC E R+++A AL  ++   G +PD  TY T++NG+C+ G T+ ALN+
Sbjct: 8   ANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNM 67

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
             +M           K + + YS I D LCK+G   KA+ +F +M ++ I P+V+TY  +
Sbjct: 68  LRKMDESQ------IKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCM 121

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I G+C    W++A+ L  +M+++ + P+VVTF+ ++N   K GK+  A  L   M++  +
Sbjct: 122 IDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNI 181

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE--IEG- 321
            P    Y++++DGFC   R+  AK +F  M S GC  D+ +   LI+G C+ K   I G 
Sbjct: 182 FPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGF 241

Query: 322 --------ALSLYSEMLSKGIRPTVVTYNT 343
                   A  L+ EM+S G+ P +VT NT
Sbjct: 242 CQVGNVNVAQDLFQEMISNGVSPDIVTCNT 271



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 169/340 (49%), Gaps = 17/340 (5%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  V +F  L   L +       L+L  R+   G  PD  TY  ++N  CK+G       
Sbjct: 7   PANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALN 66

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L ++  S    + V +++++  LC +   ++A  +FT++   G  P+V TY  +I+G C
Sbjct: 67  MLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYC 126

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A  L  +M   N        PD +T+S + +   KEG V  A+EL+ +M   N
Sbjct: 127 SYGKWSDAEQLLRDMIERN------IDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN------- 246
           I P  +TY+S+I GFC  +   +AK +F  M+ +G  P+++T N +++  C+        
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHG 240

Query: 247 ----GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
               G ++ A  L + MI  GV PD    NTL+ G C  G++ +A E+F   + +    D
Sbjct: 241 FCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLD 300

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +  I+ING CK  +++ A  L++ +   G+   VVTYN
Sbjct: 301 TATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYN 340



 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 164/355 (46%), Gaps = 40/355 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L     K         L++ +    +FP   TY+ +I+ FCK  R+     +
Sbjct: 148 PDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHM 207

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESR-----------IMEAAALFTKLRAFGCKPDVF 123
              ++    +PD +T  +LI G C   R           +  A  LF ++ + G  PD+ 
Sbjct: 208 FDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIV 267

Query: 124 TYTTLINGLCRTGHTIVALNLFE---------EMANGNGEFGVVCK-------------- 160
           T  TL+ GLC  G    AL +F+         + A  N     +CK              
Sbjct: 268 TCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSL 327

Query: 161 ------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
                  D +TY+ +     KEG   +A++++L+M  + I P  VTY S++ GFC  N  
Sbjct: 328 PVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRL 387

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            EA+ +   M+ +G  P+VVTF+ ++   CK G++D+   L   M Q G+  D   YN L
Sbjct: 388 EEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNAL 447

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
           + GFC  G +N A+++F  M S+G   D  ++  ++ G C   E++  L++  ++
Sbjct: 448 IHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDL 502



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 130/227 (57%), Gaps = 6/227 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           GC  +V T+TTL+NGLCR G  + AL L + M     +      PDA+TY TI +G+CK 
Sbjct: 5   GCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQ------PDAVTYGTIVNGMCKL 58

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G    A  +  KM +  I  +VV Y++++   C   +  +A+ +F EM ++G+ PNV+T+
Sbjct: 59  GDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTY 118

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N +++  C  GK  +A +LL  MI+  + PD   ++ L++ F   G+V+ A+EL+  M  
Sbjct: 119 NCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLR 178

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                   +Y  +I+G+CK+  +E A  ++  M+SKG  P ++T NT
Sbjct: 179 RNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNT 225



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 153/308 (49%), Gaps = 22/308 (7%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHY----------DTVLSLFKRLNSIGLFPDL 52
           +FD M+    SP  +    ++ GC    +H           +    LF+ + S G+ PD+
Sbjct: 207 MFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDI 266

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
            T N L+   C+ G++     +     +S    D  T   +I G+C  +++ EA  LF  
Sbjct: 267 VTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNS 326

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTI 169
           L   G + DV TY  LI    + G+ + A +++ EM         +CK   P  +TY+++
Sbjct: 327 LPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEM---------LCKGIIPSTVTYNSM 377

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DG CK+  +++A+++   M  E  +PDVVT+++LI+G+C A   ++   LF EM  +G+
Sbjct: 378 VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGL 437

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             + +T+N +++  CK G ++ A  + E M+  GV PD   + +++ G C    + +   
Sbjct: 438 VADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLT 497

Query: 290 LFVSMESN 297
           +   ++ +
Sbjct: 498 MLEDLQKS 505



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 69/119 (57%)

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M++ G   NVVTF  +MN LC+ G++ +A  L++ M++ G +PDA  Y T+++G C  G 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              A  +   M+ +    +V  Y  +++  CK+     A ++++EM  KGI P V+TYN
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYN 119



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M   GC  +V ++  L+NG C+   +  AL+L   M+ +G +P  VTY T
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGT 50


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 175/338 (51%), Gaps = 12/338 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ + G L      +   SLF+ +   G+ P +YTY ILI+ FCK G +      
Sbjct: 458 PDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKW 517

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L    TP+ VT+T+LI       ++  A  LF  +   GCKP+V TYT LI+G C+
Sbjct: 518 FDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCK 577

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCK-----------PDAITYSTITDGLCKEGFVDKAK 183
            G    A  ++  M  G+ E   + K           P+ ITY  + DGLCK   V +A 
Sbjct: 578 AGQIEKACQIYARM-RGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAH 636

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL   M      P+ + Y ++I GFC      +A+ +F +M ++G  PN+ T++  ++ L
Sbjct: 637 ELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCL 696

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K+ ++D   ++L  M++    P+  +Y  ++DG C  G+ + A +L + ME  GC  +V
Sbjct: 697 FKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNV 756

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +Y  +I+G+ K+ +IE  L L+ +M SKG  P  +TY
Sbjct: 757 VTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITY 794



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 183/415 (44%), Gaps = 81/415 (19%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD ML      P V ++  L     K K       LF+ +   G  P++ TY  LI+  C
Sbjct: 518 FDEMLH-KGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHC 576

Query: 64  KMGRVSPGFVVLGRIL----------------RSCFTPDAVTFTSLIKGLCAESRIMEAA 107
           K G++     +  R+                  +C  P+ +T+ +L+ GLC  +R+ EA 
Sbjct: 577 KAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAH 636

Query: 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN----------------- 150
            L   + A GC+P+   Y  +I+G C+ G    A  +F +M+                  
Sbjct: 637 ELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCL 696

Query: 151 -GNGEFGVV-----------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             +    +V           C P+ + Y+ + DGLCK G  D+A +L LKM+++  NP+V
Sbjct: 697 FKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNV 756

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTYT++I GF  +    +   LF +M  +G  PN +T+ V++N  C NG +DEA +LL+ 
Sbjct: 757 VTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDE 816

Query: 259 MIQ------------------------IGVR---------PDASVYNTLMDGFCLTGRVN 285
           M Q                        IG+          P  S+Y  L+D +   GR+ 
Sbjct: 817 MKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLE 876

Query: 286 RAKELF--VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
            A +L   +S   +  + + + Y  LI       +++ AL LY+ M+SK + P +
Sbjct: 877 VALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNVVPEL 931



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 162/347 (46%), Gaps = 30/347 (8%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL---- 75
           FN L     K++ Y     LFK++   G  P    YNI I   C      P   +L    
Sbjct: 352 FNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCS-NEEQPSSDILDLVE 410

Query: 76  ---GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
                +L      + V  ++  + LC   +  +A  +  ++   G  PD  TY+ +I  L
Sbjct: 411 KAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFL 470

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C       A +LFEEM       G+V  P   TY+ + D  CK G + +A++ F +M  +
Sbjct: 471 CDASKVEKAFSLFEEMKRN----GIV--PSVYTYTILIDSFCKAGLIQQARKWFDEMLHK 524

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              P+VVTYT+LI  +  A     A  LF  M+ +G +PNVVT+  +++  CK G++++A
Sbjct: 525 GCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKA 584

Query: 253 SRLLELM---IQIGVR-------------PDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            ++   M   I+                 P+   Y  L+DG C   RV  A EL  +M +
Sbjct: 585 CQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLA 644

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +GC  +   Y  +I+G+CK  +++ A  ++++M  +G  P + TY++
Sbjct: 645 HGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSS 691



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 145/333 (43%), Gaps = 14/333 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     +    DT   + + + S     D YT +      CK G+    F +
Sbjct: 209 PSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDL 268

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +       F PD V +  ++ GLC  S   EA  +  ++R+  C P+V TY  L++G  R
Sbjct: 269 IDEA--EDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLR 326

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       +   M          C P+   ++++    CK      A +LF KM     
Sbjct: 327 KGQLGRCKRILSMMITEG------CYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGC 380

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCL------FIEMMDQGVQPNVVTFNVIMNELCKNGK 248
            P  + Y   I   C   +   +  L      + EM+D GV  N V  +     LC  GK
Sbjct: 381 QPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGK 440

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
            D+A +++  M+  G  PD S Y+ ++   C   +V +A  LF  M+ NG +  V++Y I
Sbjct: 441 FDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTI 500

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           LI+ +CK   I+ A   + EML KG  P VVTY
Sbjct: 501 LIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTY 533



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 150/328 (45%), Gaps = 4/328 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD +       P    +N +   L +   ++  + +  R+ S    P++ TY IL++   
Sbjct: 266 FDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCL 325

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           + G++     +L  ++     P+   F SLI   C       A  LF K+   GC+P   
Sbjct: 326 RKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYL 385

Query: 124 TYTTLINGLCRTGHTIVA--LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            Y   I  +C       +  L+L E+  +   + GVV   + +  S     LC  G  D+
Sbjct: 386 VYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVL--NKVNVSNFARCLCGAGKFDQ 443

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A ++  +M  +   PD  TY+ +I   C A+   +A  LF EM   G+ P+V T+ ++++
Sbjct: 444 AFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILID 503

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK G + +A +  + M+  G  P+   Y  L+  +    ++  A ELF  M   GC  
Sbjct: 504 SFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKP 563

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEM 329
           +V +Y  LI+G+CK  +IE A  +Y+ M
Sbjct: 564 NVVTYTALIDGHCKAGQIEKACQIYARM 591



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 110/249 (44%), Gaps = 16/249 (6%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           L++  C       A     +L+ FG KP   TY  LI    R      A  +  EM +  
Sbjct: 182 LVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLS-- 239

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF-LKMKDENINPDVVTYTSLIRGFCYA 211
             +  V   D  T S     LCK G   K +E F L  + E+  PD V Y  ++ G C A
Sbjct: 240 --YAFVM--DRYTLSCFAYSLCKGG---KCREAFDLIDEAEDFVPDTVFYNRMVSGLCEA 292

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           + + EA  +   M      PNVVT+ ++++   + G++    R+L +MI  G  P+  ++
Sbjct: 293 SLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIF 352

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL------ 325
           N+L+  +C +   + A +LF  M   GC      Y I I   C N+E   +  L      
Sbjct: 353 NSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKA 412

Query: 326 YSEMLSKGI 334
           YSEML  G+
Sbjct: 413 YSEMLDLGV 421



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 133/316 (42%), Gaps = 51/316 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++    CL K+   D VL +  ++      P++  Y  +++  CK+G+    + +
Sbjct: 684 PNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKL 743

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      P+ VT+T++I G     +I +   LF  + + GC P+  TY  LIN  C 
Sbjct: 744 MLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCS 803

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G                                          +D+A +L  +MK    
Sbjct: 804 NG-----------------------------------------LLDEAYKLLDEMKQTYW 822

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              ++++  +I GF  + ++  +  L  E+ +    P    + ++++   K G+++ A  
Sbjct: 823 PKHILSHRKIIEGF--SQEFITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALD 880

Query: 255 LLELMIQIGVRPDASV-----YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           LLE   +I   P  +V     Y +L++      +V++A EL+ SM S   + ++     L
Sbjct: 881 LLE---EISSSPSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNVVPELSILVHL 937

Query: 310 INGYCKNKEIEGALSL 325
           I G  K  + + AL L
Sbjct: 938 IKGLIKVDKWQEALQL 953



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 2/170 (1%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G+ + A E   ++KD    P   TY +LI+ F  A+  + A  +  EM+      + 
Sbjct: 187 CRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDR 246

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T +     LCK GK  EA  L++        PD   YN ++ G C       A ++   
Sbjct: 247 YTLSCFAYSLCKGGKCREAFDLIDEAEDF--VPDTVFYNRMVSGLCEASLFEEAMDILHR 304

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S+ C+ +V +Y IL++G  +  ++     + S M+++G  P    +N+
Sbjct: 305 MRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNS 354



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 8/215 (3%)

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L+   CR G   +AL   EE+     +FG   KP   TY+ +     +   +D A  +  
Sbjct: 182 LVRKCCRNGWWNMAL---EELGRLK-DFGY--KPSQTTYNALIQVFLRADKLDTAYLVKR 235

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M       D  T +      C      EA  L  E  D    P+ V +N +++ LC+  
Sbjct: 236 EMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAED--FVPDTVFYNRMVSGLCEAS 293

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
             +EA  +L  M      P+   Y  L+ G    G++ R K +   M + GC  +   + 
Sbjct: 294 LFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFN 353

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            LI+ YCK+++   A  L+ +M+  G +P  + YN
Sbjct: 354 SLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYN 388


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 177/340 (52%), Gaps = 10/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D MLR     P V ++ +L   + K+  +   + +   + + G  P++ TYN++IN  
Sbjct: 159 LLDDMLR-RECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGM 217

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  RV     +L R+    F PD V++T+++KGLCA  R  +   LF ++    C P+ 
Sbjct: 218 CREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNE 277

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  L+   CR G    A+ + + M+    E G  C  +    + + + +CK+G VD A
Sbjct: 278 VTFDMLVRFFCRGGMVERAIEVLDRMS----EHG--CTANTTLCNIVINSICKQGRVDDA 331

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E    M     +PD ++YT++++G C A  W +AK L  EM+ +   PN VTFN  +  
Sbjct: 332 FEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICI 391

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+ G +D+A  L+E M + G       YN L++GFC+ GRV+ A ELF S+    C  +
Sbjct: 392 LCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLP---CEPN 448

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  L+ G C  + ++ A  L +EM+       VVT+N
Sbjct: 449 TITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFN 488



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 162/294 (55%), Gaps = 11/294 (3%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D++ YN L+  +C+ GR+     ++  +      PDA T+T LI+GLC   R+ +A +L 
Sbjct: 104 DVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCDRGRVGDALSLL 160

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTI 169
             +    C+P V TYT L+  +C++     A+ + +EM A G       C P+ +TY+ I
Sbjct: 161 DDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKG-------CTPNIVTYNVI 213

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +G+C+E  VD A+++  ++      PD V+YT++++G C A  W + + LF EM++   
Sbjct: 214 INGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNC 273

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PN VTF++++   C+ G ++ A  +L+ M + G   + ++ N +++  C  GRV+ A E
Sbjct: 274 VPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFE 333

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +M S GC  D  SY  ++ G C+    E A  L +EM+ K   P  VT+NT
Sbjct: 334 FLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNT 387



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 166/328 (50%), Gaps = 9/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F++L     +    +  + +  R++  G   +    NI+IN  CK GRV   F  
Sbjct: 275 PNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEF 334

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +     +PD +++T+++KGLC   R  +A  L  ++    C P+  T+ T I  LC+
Sbjct: 335 LNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQ 394

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ L E+M     E+G  C    +TY+ + +G C +G VD A ELF  +  E  
Sbjct: 395 KGLIDQAILLIEQMP----EYG--CSVGIVTYNALVNGFCVQGRVDSALELFNSLPCE-- 446

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +TYT+L+ G C+A   + A  L  EMM      NVVTFNV+++  C+ G ++EA  
Sbjct: 447 -PNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIE 505

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ M++ G  P+   +NTL+DG         A EL   + S G   D  +Y  +++   
Sbjct: 506 LVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLS 565

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +   IE A+ ++  +   G+RP  V YN
Sbjct: 566 REDRIEEAVQMFHAVQDMGMRPKAVMYN 593



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 161/329 (48%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  +   L   K ++ V  LF  +      P+  T+++L+  FC+ G V     V
Sbjct: 240 PDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEV 299

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+     T +      +I  +C + R+ +A      + ++GC PD  +YTT++ GLCR
Sbjct: 300 LDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCR 359

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  EM   N      C P+ +T++T    LC++G +D+A  L  +M +   
Sbjct: 360 AGRWEDAKELLNEMVRKN------CPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGC 413

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +  +VTY +L+ GFC     + A  LF  +     +PN +T+  ++  LC   ++D A+ 
Sbjct: 414 SVGIVTYNALVNGFCVQGRVDSALELFNSL---PCEPNTITYTTLLTGLCHAERLDAAAE 470

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M+Q     +   +N L+  FC  G V  A EL   M  +GC  ++ ++  L++G  
Sbjct: 471 LLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGIT 530

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++   E AL L   ++SKGI    +TY++
Sbjct: 531 EDCNSEEALELLHGLVSKGISLDTITYSS 559



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 152/321 (47%), Gaps = 9/321 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           NI+   + K    D        + S G  PD  +Y  ++   C+ GR      +L  ++R
Sbjct: 316 NIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVR 375

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P+ VTF + I  LC +  I +A  L  ++  +GC   + TY  L+NG C  G    
Sbjct: 376 KNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDS 435

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL LF  +          C+P+ ITY+T+  GLC    +D A EL  +M   +   +VVT
Sbjct: 436 ALELFNSLP---------CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVT 486

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           +  L+  FC      EA  L  +MM+ G  PN++TFN +++ + ++   +EA  LL  ++
Sbjct: 487 FNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLV 546

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             G+  D   Y++++D      R+  A ++F +++  G       Y  +++  CK  E +
Sbjct: 547 SKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETD 606

Query: 321 GALSLYSEMLSKGIRPTVVTY 341
            A+  ++ M+S    P   TY
Sbjct: 607 RAIDFFAHMVSNSCMPNESTY 627



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 119/250 (47%), Gaps = 9/250 (3%)

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
            PD    T LI+ LC   R  +AA +       G   DVF Y TL+ G CR G    A  
Sbjct: 67  APDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARR 126

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L   M            PDA TY+ +  GLC  G V  A  L   M      P VVTYT 
Sbjct: 127 LIASMP---------VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTV 177

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+   C ++ + +A  +  EM  +G  PN+VT+NVI+N +C+  ++D+A ++L  +   G
Sbjct: 178 LLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYG 237

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            +PD   Y T++ G C   R    + LF  M  N C+ +  ++ +L+  +C+   +E A+
Sbjct: 238 FQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAI 297

Query: 324 SLYSEMLSKG 333
            +   M   G
Sbjct: 298 EVLDRMSEHG 307



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 125/252 (49%), Gaps = 9/252 (3%)

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
           +S ++ L A   + EAA L  +  + G  PDV+  T LI  LCR G T  A  +    A 
Sbjct: 39  SSRLRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVL-RTAE 97

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
           G+G        D   Y+T+  G C+ G +D A+ L   M    + PD  TYT LIRG C 
Sbjct: 98  GSG-----APVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCD 149

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
                +A  L  +M+ +  QP+VVT+ V++  +CK+    +A ++L+ M   G  P+   
Sbjct: 150 RGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVT 209

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           YN +++G C   RV+ A+++   + S G   D  SY  ++ G C  K  E    L+ EM+
Sbjct: 210 YNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMV 269

Query: 331 SKGIRPTVVTYN 342
                P  VT++
Sbjct: 270 ENNCVPNEVTFD 281



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 143/296 (48%), Gaps = 13/296 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN     L +    D  + L +++   G    + TYN L+N FC  GRV     
Sbjct: 379 PPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALE 438

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +   C  P+ +T+T+L+ GLC   R+  AA L  ++    C  +V T+  L++  C
Sbjct: 439 LFNSL--PC-EPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFC 495

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ L ++M     E G  C P+ IT++T+ DG+ ++   ++A EL   +  + 
Sbjct: 496 QKGFVEEAIELVQQMM----EHG--CTPNLITFNTLLDGITEDCNSEEALELLHGLVSKG 549

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I+ D +TY+S++      +   EA  +F  + D G++P  V +N I++ LCK  + D A 
Sbjct: 550 ISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAI 609

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
                M+     P+ S Y  L++G    G +  A+ +     S  C R V S  ++
Sbjct: 610 DFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARYVL----SELCSRGVLSKSLI 661



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 6/218 (2%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P  P   ++  L   L   +  D    L   +       ++ T+N+L++ FC+ G V   
Sbjct: 444 PCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEA 503

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             ++ +++    TP+ +TF +L+ G+  +    EA  L   L + G   D  TY+++++ 
Sbjct: 504 IELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDV 563

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           L R      A+ +F  + +     G+  +P A+ Y+ I   LCK    D+A + F  M  
Sbjct: 564 LSREDRIEEAVQMFHAVQD----MGM--RPKAVMYNKILSALCKRCETDRAIDFFAHMVS 617

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +  P+  TY  LI G        EA+ +  E+  +GV
Sbjct: 618 NSCMPNESTYVILIEGLAREGLLKEARYVLSELCSRGV 655



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 53/126 (42%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P + +FN L   + ++ + +  L L   L S G+  D  TY+ +++   +  R+  
Sbjct: 513 HGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEE 572

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   +      P AV +  ++  LC       A   F  + +  C P+  TY  LI 
Sbjct: 573 AVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIE 632

Query: 131 GLCRTG 136
           GL R G
Sbjct: 633 GLAREG 638


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 173/358 (48%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K +  +     F  + ++GL PD+ TYN L+N +CK G +     +
Sbjct: 341 PTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWL 400

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG + R+   P  +T+ +LI G C    + EA  L  ++   GC PDV TYT L+NG  +
Sbjct: 401 LGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRK 460

Query: 135 TGHTIVALNLFEEMANGNGE---FGV---VCK-----------------------PDAIT 165
             +  +A   F+EM +   +   F     +C                        PD +T
Sbjct: 461 VRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVT 520

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ I DGLCK G +  AK L  KM  + + PD +TYT LI   C      EA+ L   M+
Sbjct: 521 YNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMV 580

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G+QP+VVT+ ++++  C+ G +  A      M+ +G+ P+   YN L+   C+TGR  
Sbjct: 581 SDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTP 640

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A   F  M   G   + ++Y +LI+G C+      A+ LY EM   GI P   T+N 
Sbjct: 641 LAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNA 698



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 156/309 (50%), Gaps = 9/309 (2%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L+ F+ +   G+ PD+   N ++       R      V G +L+    P  VT+ +L+  
Sbjct: 187 LAAFRLVTCHGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDS 246

Query: 97  LCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
              E R  EA+ L  ++  +  G   +  T+  +I+ L R GH   A+ L + M      
Sbjct: 247 FLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMR----- 301

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
             +  K  + TY+ +   L + GFV KA+ L ++M++E I P VVTY ++I G       
Sbjct: 302 --LSKKASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQA 359

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             A+  F EM   G+ P+V+T+N ++N  CK G + EA  LL  + + G+ P    YNTL
Sbjct: 360 EAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTL 419

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DG+C  G +  A+ L   M   GC  DV +Y IL+NG  K + +  A   + EMLSKG+
Sbjct: 420 IDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGL 479

Query: 335 RPTVVTYNT 343
           +P    YNT
Sbjct: 480 QPDCFAYNT 488



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 153/334 (45%), Gaps = 9/334 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V   N +   L     +D V +++  +  + + P + TYN L++ F K GR   
Sbjct: 196 HGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDE 255

Query: 71  GFVVLGRILRSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
             ++L  +      F+ + VTF  +I  L  E  +  A  L   +R    K   FTY  L
Sbjct: 256 ASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMR-LSKKASSFTYNPL 314

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I  L   G    A  L  EM N     G++  P  +TY+ I  GL K    + A+  F +
Sbjct: 315 ITALLERGFVRKAEALQMEMENE----GIM--PTVVTYNAIIHGLLKCEQAEAAQVKFAE 368

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M+   + PDV+TY SL+  +C A +  EA  L  ++   G+ P V+T+N +++  C+ G 
Sbjct: 369 MRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGD 428

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + EA RL E M++ G  PD   Y  LM+G      +  A+E F  M S G   D F+Y  
Sbjct: 429 LAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNT 488

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            I           A  L   M+ KGI P  VTYN
Sbjct: 489 RICAELTLSSTPMAFQLREVMMLKGIYPDTVTYN 522


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 176/338 (52%), Gaps = 11/338 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ + G L      +    LF+ +   G+ PD+YTY  L++ FCK+G +      
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNW 179

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+ VT+T+LI       ++  A  +F  + + GC P++ TYT LI+G C+
Sbjct: 180 FDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCK 239

Query: 135 TGHTIVALNLFEEMANGNGE-------FGVV----CKPDAITYSTITDGLCKEGFVDKAK 183
            G T  A  ++  M N   +       F +V     +P+ +TY  + DGLCK   V +A+
Sbjct: 240 AGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEAR 299

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L   M  E   P+ + Y +LI GFC     +EA+ +F +M+  G  PNV T++ ++++L
Sbjct: 300 DLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKL 359

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K+ ++D A ++L  M++    P+  +Y  ++DG C  G+ + A  L + ME  GC  +V
Sbjct: 360 FKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNV 419

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +Y  +I+G+ K   ++  L L   M SKG  P  +TY
Sbjct: 420 VTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITY 457



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 173/327 (52%), Gaps = 31/327 (9%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           VC+F     C+ K   ++   ++ + + S G  PD  TY+ +I   C   +V   F +  
Sbjct: 90  VCNFTRCLCCIGK---FEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQ 146

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + R+  TPD  T+T+L+   C    I +A   F +++  GC P+V TYT LI+   +T 
Sbjct: 147 EMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTR 206

Query: 137 HTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
               A  +FE M +NG       C P+ +TY+ + DG CK G  +KA +++ +MK++ ++
Sbjct: 207 KLSRANEIFEMMLSNG-------CVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVD 259

Query: 196 -PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV  Y  ++         +E K           +PNVVT+  +++ LCK  K+ EA  
Sbjct: 260 IPDVDIYFRIVD--------SELK-----------EPNVVTYGALVDGLCKAHKVKEARD 300

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE M   G  P+  +Y+ L+DGFC  G+++ A+E+F  M  +GC  +V++Y  LI+   
Sbjct: 301 LLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLF 360

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K+K ++ AL + ++ML     P VV Y
Sbjct: 361 KDKRLDLALKVLTKMLENSCAPNVVIY 387



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 166/356 (46%), Gaps = 26/356 (7%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M +     P V ++  L     K +       +F+ + S G  P++ TY  LI+  C
Sbjct: 180 FDEM-QQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHC 238

Query: 64  KMGRVS----------------PGFVVLGRILRSCFT-PDAVTFTSLIKGLCAESRIMEA 106
           K G                   P   +  RI+ S    P+ VT+ +L+ GLC   ++ EA
Sbjct: 239 KAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEA 298

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L   +   GC+P+   Y  LI+G C+ G    A  +F +M  G+G     C P+  TY
Sbjct: 299 RDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKML-GHG-----CSPNVYTY 352

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S++ D L K+  +D A ++  KM + +  P+VV YT ++ G C     +EA  L + M +
Sbjct: 353 SSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEE 412

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G  PNVVT+  +++   K G++D    LL+LM   G  P+   Y  L++  C  G ++ 
Sbjct: 413 KGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDD 472

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           A +L   M+     + +  Y  +I G+  + E   +L L +E+   G  P +  Y 
Sbjct: 473 AHKLLEEMKQTYWPKHIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVPILPVYK 526



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 165/357 (46%), Gaps = 34/357 (9%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           +PSP     FN L     ++  Y     L K++   G  P    YNILI   C    + P
Sbjct: 8   YPSP---MIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDL-P 63

Query: 71  GFVVLG-------RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
              V+G        +L      + V   +  + LC   +  +A  +  ++ + G  PD  
Sbjct: 64  SMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSS 123

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY+ +I  LC       A  LF+EM   NG       PD  TY+T+ D  CK G +++A+
Sbjct: 124 TYSKVIGYLCNASKVEKAFQLFQEMKR-NG-----ITPDVYTYTTLLDRFCKVGLIEQAR 177

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
             F +M+ +   P+VVTYT+LI  +      + A  +F  M+  G  PN+VT+  +++  
Sbjct: 178 NWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGH 237

Query: 244 CKNGKMDEASRLLELM---------IQIGVR--------PDASVYNTLMDGFCLTGRVNR 286
           CK G+ ++A ++   M         + I  R        P+   Y  L+DG C   +V  
Sbjct: 238 CKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKE 297

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A++L  +M   GC  +   Y  LI+G+CK  +++ A  ++++ML  G  P V TY++
Sbjct: 298 ARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSS 354



 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 154/332 (46%), Gaps = 40/332 (12%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F+ ++S    P++ TY  L++  CK  +V     +L  +      P+ + + +LI G C 
Sbjct: 267 FRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCK 326

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             ++ EA  +FTK+   GC P+V+TY++LI+ L +     +AL +  +M   +      C
Sbjct: 327 VGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENS------C 380

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            P+ + Y+ + DGLCK G  D+A  L L M+++   P+VVTYT++I GF  A   +    
Sbjct: 381 APNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLE 440

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI----------------- 262
           L   M  +G  PN +T+ V++N  C  G +D+A +LLE M Q                  
Sbjct: 441 LLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFS 500

Query: 263 ----------------GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
                           G  P   VY  L+D F   GR+  A EL   + S        +Y
Sbjct: 501 HEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQ-NTY 559

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
             LI       +++ A  LYS+M  +G  P +
Sbjct: 560 VSLIESLTLACKVDKAFKLYSDMTRRGFVPEL 591



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 123/254 (48%), Gaps = 5/254 (1%)

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           I   C+ P  + F SL+   C       A  L  K+   G +P    Y  LI G+C T  
Sbjct: 3   ITEGCY-PSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 138 --TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
             ++  + L E   N   E GVV   + +     T  LC  G  +KA  +  +M  +   
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVL--NKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFI 119

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PD  TY+ +I   C A+   +A  LF EM   G+ P+V T+  +++  CK G +++A   
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNW 179

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            + M Q G  P+   Y  L+  +  T +++RA E+F  M SNGC+ ++ +Y  LI+G+CK
Sbjct: 180 FDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCK 239

Query: 316 NKEIEGALSLYSEM 329
             E E A  +Y+ M
Sbjct: 240 AGETEKACQIYARM 253



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 116/238 (48%), Gaps = 22/238 (9%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC--KPDAITYSTITDGLC 174
           GC P    + +L++  CR+G    A  L ++M        V+C  +P  + Y+ +  G+C
Sbjct: 6   GCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKM--------VICGYQPGYVVYNILIGGIC 57

Query: 175 KE---------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
                      G  ++A    L+M    +  + V   +  R  C    + +A  +  EMM
Sbjct: 58  STEDLPSMEVIGLAERAYNEMLEM---GVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMM 114

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            +G  P+  T++ ++  LC   K+++A +L + M + G+ PD   Y TL+D FC  G + 
Sbjct: 115 SKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIE 174

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +A+  F  M+ +GC  +V +Y  LI+ Y K +++  A  ++  MLS G  P +VTY  
Sbjct: 175 QARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTA 232



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 131/323 (40%), Gaps = 45/323 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  ML  H   P V +++ L   L K+K  D  L +  ++      P++  Y  +++  
Sbjct: 336 VFTKMLG-HGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGL 394

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+G+    + ++  +      P+ VT+T++I G     R+     L   + + GC P+ 
Sbjct: 395 CKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNF 454

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LIN  C  G                                          +D A
Sbjct: 455 ITYRVLINHCCAAG-----------------------------------------LLDDA 473

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L  +MK       +  Y  +I GF  ++++  +  L  E+ + G  P +  + ++++ 
Sbjct: 474 HKLLEEMKQTYWPKHIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVPILPVYKLLIDN 531

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K G+++ A  L E +         + Y +L++   L  +V++A +L+  M   G + +
Sbjct: 532 FIKAGRLEMALELHEELSSFSAAYQ-NTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPE 590

Query: 303 VFSYGILINGYCKNKEIEGALSL 325
           +     LI G  +  + E AL L
Sbjct: 591 LSMLVCLIKGLLRVGKWEEALQL 613



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 41/196 (20%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN-- 246
           M  E   P  + + SL+  +C + D+  A  L  +M+  G QP  V +N+++  +C    
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 247 ---------------------------------------GKMDEASRLLELMIQIGVRPD 267
                                                  GK ++A  ++  M+  G  PD
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
           +S Y+ ++   C   +V +A +LF  M+ NG   DV++Y  L++ +CK   IE A + + 
Sbjct: 122 SSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFD 181

Query: 328 EMLSKGIRPTVVTYNT 343
           EM   G  P VVTY  
Sbjct: 182 EMQQDGCAPNVVTYTA 197


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 176/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKFCVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G  PDV+TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM     E G+V  P+++T++T+ DG CK G+VD A E++
Sbjct: 217 VLINGLCKESKMDDANKLFDEML----EKGLV--PNSVTFTTLIDGHCKNGWVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD+VTY +LI G C   D  +A  L  EM   G++P+ +T+  +++  CK 
Sbjct: 271 KQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    ++MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 331 GDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYN 426



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD +TY+ +  GLCK+G + +A +L  +M    
Sbjct: 259 KNGWVDLAMEIYKQMLSQS------LLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 99/171 (57%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CKEG +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M   GV P+
Sbjct: 152 FCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPD 211

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V T++V++N LCK  KMD+A++L + M++ G+ P++  + TL+DG C  G V+ A E++ 
Sbjct: 212 VYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYK 271

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M S   + D+ +Y  LI G CK  +++ A  L  EM   G++P  +TY T
Sbjct: 272 QMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTT 322



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 73/124 (58%)

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E+++ G   ++  FN++M+  CK G +  A  + + + + G+RP    YNTLM+G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  V
Sbjct: 189 RLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSV 248

Query: 340 TYNT 343
           T+ T
Sbjct: 249 TFTT 252


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 163/295 (55%), Gaps = 7/295 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD++ YN +I+ FCK  R+     VL R+ R  F+PD VT   +I   C + +I  A  +
Sbjct: 42  PDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKV 101

Query: 110 FTKL-RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           F +L +   CKP + TYT LI      G    AL L +EM +   E      PD  TY+ 
Sbjct: 102 FEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLE------PDTFTYNV 155

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           IT GLCKEG VD+A E    +      PDV+TY  L+R       W+E +    E+  +G
Sbjct: 156 ITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRG 215

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
            +PNVVT++++++ LC++GK++E+  L+++M + G+ PDA  Y+ L+  FC  G+++ A 
Sbjct: 216 CEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAI 275

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           E    M  +G + D+ +Y  ++   CKN   + A+ ++ ++   G  P V +YNT
Sbjct: 276 EFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNT 330



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 169/339 (49%), Gaps = 10/339 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +L  H   P V ++N +     K    ++  ++  R+   G  PD+ T+NI+I  FC  G
Sbjct: 35  ILEKH-GKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKG 93

Query: 67  RVSPGFVVLGRILR--SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
           ++     V   +L+  +C  P  +T+T LI+    E  I EA  L  ++ + G +PD FT
Sbjct: 94  KIDLALKVFEELLKDNNC-KPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFT 152

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  +  GLC+ G    A   F    N  G     CKPD ITY+ +   L  +G  D+ ++
Sbjct: 153 YNVITRGLCKEGKVDRAFE-FVRTLNSRG-----CKPDVITYNILLRALLNQGKWDEGEK 206

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
              ++      P+VVTY+ LI   C      E+  L   M ++G+ P+   ++ ++   C
Sbjct: 207 WMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFC 266

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           + GK+D A   L+ MI  G  PD   YNT+M   C  G  + A E+F  ++  GC  +V 
Sbjct: 267 REGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVS 326

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           SY  +++    + +   AL + S+MLSKGI P V+TYN+
Sbjct: 327 SYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNS 365



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 161/342 (47%), Gaps = 8/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINC 61
           + D M R   SP  V + NI+ G        D  L +F+ L       P L TY ILI  
Sbjct: 66  VLDRMKRKGFSPD-VVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEA 124

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +   G +     +L  +L     PD  T+  + +GLC E ++  A      L + GCKPD
Sbjct: 125 YILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPD 184

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V TY  L+  L   G          E+      F   C+P+ +TYS +   LC++G +++
Sbjct: 185 VITYNILLRALLNQGKWDEGEKWMSEI------FSRGCEPNVVTYSILISSLCRDGKIEE 238

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           +  L   MK++ + PD   Y  LI  FC     + A      M+  G  P++V +N IM 
Sbjct: 239 SVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMA 298

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCKNG  D A  +   + ++G  P+ S YNT++     +G   RA  +   M S G   
Sbjct: 299 ALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDP 358

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           DV +Y  LI+  C++  ++ A+ L ++MLS   +P +V+Y T
Sbjct: 359 DVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKT 400



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 166/339 (48%), Gaps = 6/339 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ +L+ +   P + ++ IL          D  L L   + S GL PD +TYN++    
Sbjct: 101 VFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGL 160

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G+V   F  +  +      PD +T+  L++ L  + +  E     +++ + GC+P+V
Sbjct: 161 CKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNV 220

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY+ LI+ LCR G    ++NL + M     E G+   PDA  Y  +    C+EG +D A
Sbjct: 221 VTYSILISSLCRDGKIEESVNLVKVMK----EKGLT--PDAYCYDPLIAAFCREGKLDMA 274

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E    M  +   PD+V Y +++   C   + + A  +F ++ + G  PNV ++N +++ 
Sbjct: 275 IEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSA 334

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L  +G    A  ++  M+  G+ PD   YN+L+   C  G V+ A  L   M S     +
Sbjct: 335 LWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPN 394

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + SY  ++ G CK   I+ A+ + + M+  G +P   TY
Sbjct: 395 IVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTY 433



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 158/319 (49%), Gaps = 16/319 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N++   L K    D      + LNS G  PD+ TYNIL+      G+   G   
Sbjct: 148 PDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKW 207

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  I      P+ VT++ LI  LC + +I E+  L   ++  G  PD + Y  LI   CR
Sbjct: 208 MSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCR 267

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            G   +A+   + M         +C    PD + Y+TI   LCK G  D A E+F K+ +
Sbjct: 268 EGKLDMAIEFLDCM---------ICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDE 318

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               P+V +Y +++     + D   A  +  +M+ +G+ P+V+T+N +++ LC++G +DE
Sbjct: 319 VGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDE 378

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  LL  M+    +P+   Y T++ G C   R++ A E+  +M  NGC  +  +Y +LI 
Sbjct: 379 AIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIE 438

Query: 312 GY----CKNKEIEGALSLY 326
           G      + + +E A SLY
Sbjct: 439 GIGFSGSRTQAMELANSLY 457



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M  ++  PDV+  T LI+GF  + + ++A  + + ++++  +P+V  +N +++  CK  +
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRV-MGILEKHGKPDVFAYNAVISGFCKANR 59

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS-MESNGCMRDVFSYG 307
           ++ A  +L+ M + G  PD   +N ++  FC  G+++ A ++F   ++ N C   + +Y 
Sbjct: 60  IESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYT 119

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ILI  Y     I+ AL L  EMLS+G+ P   TYN
Sbjct: 120 ILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYN 154



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S+N +   L  +      L +  ++ S G+ PD+ TYN LI+C C+ G V     
Sbjct: 322 PPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIG 381

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +L   F P+ V++ +++ GLC   RI +A  +   +   GC+P+  TYT LI G+ 
Sbjct: 382 LLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIG 441

Query: 134 RTGHTIVALNL 144
            +G    A+ L
Sbjct: 442 FSGSRTQAMEL 452


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/330 (36%), Positives = 177/330 (53%), Gaps = 10/330 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   + N +   LA+N+    V  LF+ L +    P+++T+NI+I+  CK G +     
Sbjct: 165 PPNTRTCNHILLRLARNRQGGLVRRLFEHLPA----PNVFTFNIVIDFLCKQGELVEARA 220

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  R+     +PD VT+ SLI G      + E   L +++R  GC  DV TY  LIN   
Sbjct: 221 LFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFS 280

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A + F EM       GV+   + +T ST  D  CKEG V +A +LF +M+   
Sbjct: 281 KFGWIEKAYSYFGEMK----RLGVMA--NVVTLSTFVDAFCKEGLVREAMKLFAQMRVRG 334

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+  TYTSL+ G C A   ++A  L  EM+ QG+ PNVVT+ V+++ LCK GK+  A 
Sbjct: 335 MMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVAD 394

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L LM + GV+ +  +Y TL+ G  +     RA +L   M++ G   DV  YG LI G 
Sbjct: 395 DVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGL 454

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK ++++ A SL  +M   G+RP  V Y T
Sbjct: 455 CKVQKLDEAKSLLHKMDDCGLRPNTVIYTT 484



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    + V  L   +   G   D+ TYN LINCF K G +   +  
Sbjct: 232 PDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSY 291

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G + R     + VT ++ +   C E  + EA  LF ++R  G  P+ FTYT+L++G C+
Sbjct: 292 FGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCK 351

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ L +EM +     G+V  P+ +TY+ + DGLCKEG V  A ++   M+   +
Sbjct: 352 AGRLDDAIVLLDEMVHQ----GLV--PNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGV 405

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + + YT+LI G     +   A  L  EM ++G++ +V  +  ++  LCK  K+DEA  
Sbjct: 406 KANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKS 465

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M   G+RP+  +Y T+MD F   G+ + A  L   +  +G   +V +Y  LI+G C
Sbjct: 466 LLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLC 525

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   I  A+S + +M   G+ P V  Y T
Sbjct: 526 KAGSIYEAISHFDKMRELGLDPNVQVYTT 554



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 166/306 (54%), Gaps = 6/306 (1%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            + LF ++   G+ P+ +TY  L++  CK GR+    V+L  ++     P+ VT+T ++ 
Sbjct: 323 AMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVD 382

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
           GLC E ++  A  + + +   G K +   YTTLI+G     ++  AL+L  EM N   E 
Sbjct: 383 GLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMEL 442

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
                 D   Y T+  GLCK   +D+AK L  KM D  + P+ V YT+++  F  A   +
Sbjct: 443 ------DVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKES 496

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA  L  ++ D G+QPNVVT+  +++ LCK G + EA    + M ++G+ P+  VY TL+
Sbjct: 497 EAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLI 556

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           DGFC  G +++A  L   M   G   D   Y  LI+G+ K  +++GA +L ++M+  G++
Sbjct: 557 DGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQ 616

Query: 336 PTVVTY 341
             +  Y
Sbjct: 617 LDLYCY 622



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 160/359 (44%), Gaps = 41/359 (11%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R+    P   ++  L     K    D  + L   +   GL P++ TY ++++  CK G+
Sbjct: 330 MRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGK 389

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKG------------------------------- 96
           V+    VL  + R+    + + +T+LI G                               
Sbjct: 390 VAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGT 449

Query: 97  ----LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
               LC   ++ EA +L  K+   G +P+   YTT+++   + G    A+ L  ++ +  
Sbjct: 450 LIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSG 509

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                  +P+ +TY  + DGLCK G + +A   F KM++  ++P+V  YT+LI GFC   
Sbjct: 510 ------LQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIG 563

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             ++A  L  EM+D+G+  + V +  +++   K G +  A  L   MI+ G++ D   Y 
Sbjct: 564 SLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYT 623

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             + GFC    +  A+ +   M   G   D  +Y  LI  Y K   +E A SL +EM S
Sbjct: 624 CFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMES 682


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 170/318 (53%), Gaps = 11/318 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++  +   LAKNK     ++L +++ + G  P + TYN L+N  CKMGR+     +L 
Sbjct: 259 IHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 318

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           +I+ +  TPD VT+TSLI GL  E R  EA  LF ++ + G   D   YT LI GL +TG
Sbjct: 319 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTG 378

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A ++++ M +        C PD +T ST+ DGL K G +  A  +F  M+   + P
Sbjct: 379 KIPQASSVYKTMTSHG------CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAP 432

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + V Y++LI G C A   + A  +  +M      P+ +T+N++++ LCK+G ++ A    
Sbjct: 433 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFF 492

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M++ G +PD   YN L+ G C  G  + A  +   M S+      F Y  L++G CK+
Sbjct: 493 DEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSS-----RFVYSSLVDGLCKS 547

Query: 317 KEIEGALSLYSEMLSKGI 334
            ++EG   L+ EM   G+
Sbjct: 548 GKLEGGCMLFHEMERSGV 565



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 183/365 (50%), Gaps = 45/365 (12%)

Query: 15  PPVCSFNILFG--CLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCFCKMGRVSP- 70
           P V ++N+L    CLA+    +   ++ + +    G+ P L T+N++++  CK G+V   
Sbjct: 152 PDVETWNVLITGYCLAREP--EEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAA 209

Query: 71  -----------------------GFVVLGRILRSCF----------TPDAVTFTSLIKGL 97
                                  G V  G ++++            T D  T+T+++  L
Sbjct: 210 MDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWL 269

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
               +I EA AL  K+ A GC P + TY  L+NGLC+ G    A++L  ++ + NG    
Sbjct: 270 AKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD-NG---- 324

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
            C PD +TY+++ DGL KE    +A +LF +M    +  D V YT+LIRG        +A
Sbjct: 325 -CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQA 383

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             ++  M   G  P+VVT + +++ L K G++  A R+ + M   G+ P+  VY+ L+ G
Sbjct: 384 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 443

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C   +++ A E+   M+   C  D  +Y ILI+G CK+ ++E A + + EML  G +P 
Sbjct: 444 LCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPD 503

Query: 338 VVTYN 342
           V TYN
Sbjct: 504 VYTYN 508



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 158/318 (49%), Gaps = 6/318 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P    +F+IL   L K        SL +   + G   D++TY  ++N   K  ++     
Sbjct: 221 PVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVA 280

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++ +I  +  TP   T+ +L+ GLC   R+ EA  L  K+   GC PDV TYT+LI+GL 
Sbjct: 281 LMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLG 340

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +   +  A  LF+EMA+       VC      Y+ +  GL + G + +A  ++  M    
Sbjct: 341 KEKRSFEAYKLFKEMASRGLALDTVC------YTALIRGLLQTGKIPQASSVYKTMTSHG 394

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PDVVT +++I G   A     A  +F  M  +G+ PN V ++ +++ LCK  KMD A 
Sbjct: 395 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 454

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L  M +    PD   YN L+DG C +G V  A+  F  M   GC  DV++Y ILI+G 
Sbjct: 455 EMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGL 514

Query: 314 CKNKEIEGALSLYSEMLS 331
           CK    + A  +  +M S
Sbjct: 515 CKAGNTDAACGVLDDMSS 532



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 149/288 (51%), Gaps = 14/288 (4%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V + + +   L+K       + +FK + + GL P+   Y+ LI+  CK  ++  
Sbjct: 393 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 452

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L ++ ++  TPD +T+  LI GLC    +  A A F ++   GCKPDV+TY  LI+
Sbjct: 453 ALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILIS 512

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLC+ G+T  A  + ++M++               YS++ DGLCK G ++    LF +M+
Sbjct: 513 GLCKAGNTDAACGVLDDMSSSR-----------FVYSSLVDGLCKSGKLEGGCMLFHEME 561

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
              +  +  T T LI   C AN  +EA  LF  +  +G+ P+   +N I++ L K+GK++
Sbjct: 562 RSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVN 619

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           E   + + M +   +PD   YN L++G     R++RA   ++ M   G
Sbjct: 620 EGQAVYQEMTRWW-KPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRG 666



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 152/324 (46%), Gaps = 13/324 (4%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNS--IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +F CL   K  D    LF+ L+S   G    ++T N L++ F +  R      +L   L 
Sbjct: 91  IFQCL---KDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELA 147

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA-FGCKPDVFTYTTLINGLCRTGHTI 139
           + F PD  T+  LI G C      EA A+  ++   FG  P + T+  +++GLC++G  +
Sbjct: 148 TIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVL 207

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A++ FE +              A T+S + +GL K G + +A  L  +        D+ 
Sbjct: 208 AAMDHFEAVRRS-------MPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIH 260

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TYT+++          EA  L  ++   G  P + T+N ++N LCK G+++EA  LL  +
Sbjct: 261 TYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 320

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           +  G  PD   Y +L+DG     R   A +LF  M S G   D   Y  LI G  +  +I
Sbjct: 321 VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKI 380

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A S+Y  M S G  P VVT +T
Sbjct: 381 PQASSVYKTMTSHGCVPDVVTLST 404


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 177/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   +K +   G    LY +NIL++ FCK G
Sbjct: 95  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEG 154

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 155 DIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 214

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM +     G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 215 VLINGLCKESKMDDANELFDEMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEVY 268

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A+ L  EM  +G++P+ +++  +++  CK 
Sbjct: 269 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKE 328

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 329 GDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTY 388

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 389 TMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYN 424



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 166/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K       LS+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 137 PASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 196

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 197 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 256

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M+ + 
Sbjct: 257 KNGRVDLAMEVYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKG 310

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD ++YT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 311 LKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAE 370

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G+RPD   Y  +++ FC  G V    +L   M+ +G +  V +Y +L+NG
Sbjct: 371 KMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 97/171 (56%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CKEG +  A  +F  +    + P VV++ +L+ G+    D +E   L   M   GVQP+
Sbjct: 150 FCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPD 209

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++ 
Sbjct: 210 VYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYK 269

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  ++Y T
Sbjct: 270 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTT 320



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + +Y T+I+ LC       A NL + + +  G+      F  +       + D   +S +
Sbjct: 17  LHSYCTMIHFLCTHQMLPEAKNLIQVVVSRKGKNSASAVFAAILETQGTQRSDIYVFSGL 76

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E +   ++        T   ++        +      + E+++ G 
Sbjct: 77  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEILECGY 136

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK G +  A  + + + + G+RP    +NTLM+G+   G ++    
Sbjct: 137 PASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 196

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 197 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTT 250



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 36/164 (21%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++  ML    SP  + ++N L   L K         L   +   GL PD  +Y  LI+  
Sbjct: 267 VYKQMLSQSLSPDLI-TYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGC 325

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD- 121
           CK G +   F    R+++     D V +T+LI GLC E R ++A  +  ++ + G +PD 
Sbjct: 326 CKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDT 385

Query: 122 ----------------------------------VFTYTTLING 131
                                             V TY  L+NG
Sbjct: 386 GTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 164/325 (50%), Gaps = 6/325 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           +CSF  L   L K    D    ++ ++ + G+ P L T+N +IN  CK GRV    +++ 
Sbjct: 167 LCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            I R    P+A T+TSLI G C    +  A A+F ++   GC P+  TY+TLINGLC  G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+++ EEM     E      P   TY+     LC  G   +A EL  KMK     P
Sbjct: 287 RLEEAMDMLEEMVQKGIE------PTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVP 340

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           ++ T+T+LI G      +  A  L+ +M+  G+ P  VT+N ++N+LC  G+ + A  + 
Sbjct: 341 NIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIF 400

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M+  G  P    YN ++  FCL G + +A  +F  M   G   +V +Y  LI GYCK 
Sbjct: 401 KWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
             +  A+ L   M   G++P   TY
Sbjct: 461 GNLNNAMRLLEIMKGNGLKPDAWTY 485



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 173/340 (50%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I  ++ R    P      +++ G   +N + D   ++F R+   G  P+  TY+ LIN  
Sbjct: 224 IMSHIFRYDAYPNAFTYTSLILGH-CRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGL 282

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GR+     +L  +++    P   T+T  +  LC      EA  L  K++  GC P++
Sbjct: 283 CSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNI 342

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+T LI+GL R G   +A+ L+ +M       G+V  P  +TY+ + + LC EG  + A
Sbjct: 343 QTFTALISGLSRDGKFEIAIGLYHKMLAD----GLV--PTTVTYNALINQLCVEGRFETA 396

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +F  M      P   TY  +I+ FC   D  +A  +F +M+  G  PNV+T+N ++  
Sbjct: 397 FTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYG 456

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G ++ A RLLE+M   G++PDA  Y  L+ GF   G++  A  LF  M  +G   +
Sbjct: 457 YCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPN 516

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  +I+GY    +++ AL+L+ +M+  G  P+  TYN
Sbjct: 517 HVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYN 556



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 166/331 (50%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L+++  ++  + L+ ++ + GL P   TYN LIN  C  GR    F +
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P   T+  +IK  C    I +A  +F K+   G  P+V TY TLI G C+
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCK 459

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+ L E M  GNG      KPDA TY+ +  G  + G ++ A  LF  M +  I
Sbjct: 460 QGNLNNAMRLLEIM-KGNG-----LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI 513

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ VTYT++I G+      ++A  LF +M++ G  P+  T+NV+++   K   + EA  
Sbjct: 514 SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAEN 573

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M++ G+ P+   Y + +DG C  GR   A ++F  ME      ++++Y  LI G C
Sbjct: 574 FCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLC 633

Query: 315 KNKEIEGA--LSLYSEMLSKGIRPTVVTYNT 343
           +    E A   +L + +   G  P V TY T
Sbjct: 634 QEGRAEDAEMYNLLARLTHYGCEPNVDTYTT 664



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 169/372 (45%), Gaps = 30/372 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M++    P  V +++ L   L      +  + + + +   G+ P +YTY I + 
Sbjct: 257 FAMFDRMVKDGCDPNSV-TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLV 315

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  G  S    +LG++ +    P+  TFT+LI GL  + +   A  L+ K+ A G  P
Sbjct: 316 SLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVP 375

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMAN--------------------GNGEFGVV-- 158
              TY  LIN LC  G    A  +F+ M +                    G+ +  +V  
Sbjct: 376 TTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIF 435

Query: 159 -------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    P+ ITY+T+  G CK+G ++ A  L   MK   + PD  TYT LI GF   
Sbjct: 436 DKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRG 495

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                A  LF  MM+ G+ PN VT+  I++      K+D+A  L   M++ G  P +  Y
Sbjct: 496 GKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTY 555

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N ++ GF  T  ++ A+     M   G + +V +Y   I+G C+N     A  ++ EM  
Sbjct: 556 NVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEK 615

Query: 332 KGIRPTVVTYNT 343
           +   P + TY++
Sbjct: 616 RNYFPNLYTYSS 627



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 145/267 (54%), Gaps = 6/267 (2%)

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++L S   P  +TF ++I  LC + R+ EA  + + +  +   P+ FTYT+LI G CR  
Sbjct: 192 KMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNH 251

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +  +A  +F+ M          C P+++TYST+ +GLC EG +++A ++  +M  + I P
Sbjct: 252 NLDLAFAMFDRMVKDG------CDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            V TYT  +   C A   +EA  L  +M  +G  PN+ TF  +++ L ++GK + A  L 
Sbjct: 306 TVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLY 365

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M+  G+ P    YN L++  C+ GR   A  +F  M S+G +    +Y  +I  +C  
Sbjct: 366 HKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLM 425

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +I+ A+ ++ +ML  G  P V+TYNT
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNT 452



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 169/341 (49%), Gaps = 9/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD ML+   S P V ++N L     K  + +  + L + +   GL PD +TY  LI+ F
Sbjct: 434 IFDKMLKA-GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + G++     +   ++    +P+ VT+T++I G    +++ +A ALF K+   G  P  
Sbjct: 493 SRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSS 552

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +I+G  +T     A N   +M       G++  P+ ITY++  DGLC+ G    A
Sbjct: 553 QTYNVMISGFSKTNSISEAENFCGKMVKQ----GLL--PNVITYTSFIDGLCRNGRTGLA 606

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC--LFIEMMDQGVQPNVVTFNVIM 240
            ++F +M+  N  P++ TY+SLI G C      +A+   L   +   G +PNV T+  ++
Sbjct: 607 FKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLV 666

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LC  G+  EA +L+  M + G++P   +Y  L+ G C   +V  A  +F SM++ G  
Sbjct: 667 KGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQ 726

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +  Y  LI   CK   IE A  ++  ML K      V +
Sbjct: 727 LHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVW 767



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 164/339 (48%), Gaps = 31/339 (9%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
            + P   P    NIL      +K+ D+VL  F  ++    F         ++CF  M   
Sbjct: 71  HLSPKLKPHHVVNIL----QTHKNTDSVLRFFFWISRRKFFKHD------MSCFVSM--- 117

Query: 69  SPGFVVLGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA---FGCKPDVFT 124
                 L R++R   F P       +IK    E  +       +++ +   FG    + +
Sbjct: 118 ------LNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYT--LCS 169

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           +TTL+  L +     +A +++ +M N         +P  +T++T+ + LCK+G V +AK 
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSG------IRPSLLTFNTMINILCKKGRVQEAKL 223

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +   +   +  P+  TYTSLI G C  ++ + A  +F  M+  G  PN VT++ ++N LC
Sbjct: 224 IMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLC 283

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
             G+++EA  +LE M+Q G+ P    Y   +   C  G  + A EL   M+  GC+ ++ 
Sbjct: 284 SEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQ 343

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  LI+G  ++ + E A+ LY +ML+ G+ PT VTYN 
Sbjct: 344 TFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNA 382



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 137/278 (49%), Gaps = 8/278 (2%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D  L+LF ++   G  P   TYN++I+ F K   +S      G++++    P+ +T+TS 
Sbjct: 534 DDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSF 593

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA--LNLFEEMANG 151
           I GLC   R   A  +F ++      P+++TY++LI GLC+ G    A   NL   + + 
Sbjct: 594 IDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH- 652

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
              +G  C+P+  TY+T+  GLC EG   +A +L + M+ + + P    Y +L+ G C  
Sbjct: 653 ---YG--CEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKN 707

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                A  +F  M   G Q ++  +  ++  LCK   ++EA  + + M++     D  V+
Sbjct: 708 LKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVW 767

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
             L+DG    G  +   +L   MES  C  +  +Y +L
Sbjct: 768 TVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVML 805



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 11/255 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG--F 72
           P V ++      L +N        +F  +     FP+LYTY+ LI   C+ GR      +
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMY 644

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L R+      P+  T+T+L+KGLC E R  EA  L   ++  G +P    Y  L+ G 
Sbjct: 645 NLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGE 704

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+      ALN+F  M     +  +        Y  +   LCKE F+++A+ +F  M ++
Sbjct: 705 CKNLKVESALNIFYSMDTLGFQLHLS------DYKALICALCKENFIEEAQCIFQTMLEK 758

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           + N D V +T L+ G     + +    L   M  +    N  T+ ++  EL     +D A
Sbjct: 759 HWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLAREL---SALDCA 815

Query: 253 SRLLELMIQIGVRPD 267
            ++ ++  Q+G+  D
Sbjct: 816 IKIPQISQQLGIVKD 830


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 164/325 (50%), Gaps = 6/325 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           +CSF  L   L K    D    ++ ++ + G+ P L T+N +IN  CK GRV    +++ 
Sbjct: 167 LCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            I R    P+A T+TSLI G C    +  A A+F ++   GC P+  TY+TLINGLC  G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+++ EEM     E      P   TY+     LC  G   +A EL  KMK     P
Sbjct: 287 RLEEAMDMLEEMVQKGIE------PTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVP 340

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           ++ T+T+LI G      +  A  L+ +M+  G+ P  VT+N ++N+LC  G+ + A  + 
Sbjct: 341 NIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIF 400

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M+  G  P    YN ++  FCL G + +A  +F  M   G   +V +Y  LI GYCK 
Sbjct: 401 KWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
             +  A+ L   M   G++P   TY
Sbjct: 461 GNLNNAMRLLEIMKGNGLKPDAWTY 485



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 173/340 (50%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I  ++ R    P      +++ G   +N + D   ++F R+   G  P+  TY+ LIN  
Sbjct: 224 IMSHIFRYDAYPNAFTYTSLILGH-CRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGL 282

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GR+     +L  +++    P   T+T  +  LC      EA  L  K++  GC P++
Sbjct: 283 CSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNI 342

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+T LI+GL R G   +A+ L+ +M       G+V  P  +TY+ + + LC EG  + A
Sbjct: 343 QTFTALISGLSRDGKFEIAIGLYHKMLAD----GLV--PTTVTYNALINQLCVEGRFETA 396

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +F  M      P   TY  +I+ FC   D  +A  +F +M+  G  PNV+T+N ++  
Sbjct: 397 FTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYG 456

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G ++ A RLLE+M   G++PDA  Y  L+ GF   G++  A  LF  M  +G   +
Sbjct: 457 YCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPN 516

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  +I+GY    +++ AL+L+ +M+  G  P+  TYN
Sbjct: 517 HVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYN 556



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 166/331 (50%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L+++  ++  + L+ ++ + GL P   TYN LIN  C  GR    F +
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P   T+  +IK  C    I +A  +F K+   G  P+V TY TLI G C+
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCK 459

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+ L E M  GNG      KPDA TY+ +  G  + G ++ A  LF  M +  I
Sbjct: 460 QGNLNNAMRLLEIM-KGNG-----LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI 513

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ VTYT++I G+      ++A  LF +M++ G  P+  T+NV+++   K   + EA  
Sbjct: 514 SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAEN 573

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M++ G+ P+   Y + +DG C  GR   A ++F  ME      ++++Y  LI G C
Sbjct: 574 FCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLC 633

Query: 315 KNKEIEGA--LSLYSEMLSKGIRPTVVTYNT 343
           +    E A   +L + +   G  P V TY T
Sbjct: 634 QEGRAEDAEMYNLLARLTHYGCEPNVDTYTT 664



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 169/372 (45%), Gaps = 30/372 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M++    P  V +++ L   L      +  + + + +   G+ P +YTY I + 
Sbjct: 257 FAMFDRMVKDGCDPNSV-TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLV 315

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  G  S    +LG++ +    P+  TFT+LI GL  + +   A  L+ K+ A G  P
Sbjct: 316 SLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVP 375

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMAN--------------------GNGEFGVV-- 158
              TY  LIN LC  G    A  +F+ M +                    G+ +  +V  
Sbjct: 376 TTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIF 435

Query: 159 -------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    P+ ITY+T+  G CK+G ++ A  L   MK   + PD  TYT LI GF   
Sbjct: 436 DKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRG 495

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                A  LF  MM+ G+ PN VT+  I++      K+D+A  L   M++ G  P +  Y
Sbjct: 496 GKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTY 555

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N ++ GF  T  ++ A+     M   G + +V +Y   I+G C+N     A  ++ EM  
Sbjct: 556 NVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEK 615

Query: 332 KGIRPTVVTYNT 343
           +   P + TY++
Sbjct: 616 RNYFPNLYTYSS 627



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 145/267 (54%), Gaps = 6/267 (2%)

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++L S   P  +TF ++I  LC + R+ EA  + + +  +   P+ FTYT+LI G CR  
Sbjct: 192 KMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNH 251

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +  +A  +F+ M          C P+++TYST+ +GLC EG +++A ++  +M  + I P
Sbjct: 252 NLDLAFAMFDRMVKDG------CDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            V TYT  +   C A   +EA  L  +M  +G  PN+ TF  +++ L ++GK + A  L 
Sbjct: 306 TVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLY 365

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M+  G+ P    YN L++  C+ GR   A  +F  M S+G +    +Y  +I  +C  
Sbjct: 366 HKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLM 425

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +I+ A+ ++ +ML  G  P V+TYNT
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNT 452



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 169/341 (49%), Gaps = 9/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD ML+   S P V ++N L     K  + +  + L + +   GL PD +TY  LI+ F
Sbjct: 434 IFDKMLKA-GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + G++     +   ++    +P+ VT+T++I G    +++ +A ALF K+   G  P  
Sbjct: 493 SRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSS 552

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +I+G  +T     A N   +M       G++  P+ ITY++  DGLC+ G    A
Sbjct: 553 QTYNVMISGFSKTNSISEAENFCGKMVKQ----GLL--PNVITYTSFIDGLCRNGRTGLA 606

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC--LFIEMMDQGVQPNVVTFNVIM 240
            ++F +M+  N  P++ TY+SLI G C      +A+   L   +   G +PNV T+  ++
Sbjct: 607 FKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLV 666

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LC  G+  EA +L+  M + G++P   +Y  L+ G C   +V  A  +F SM++ G  
Sbjct: 667 KGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQ 726

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +  Y  LI   CK   IE A  ++  ML K      V +
Sbjct: 727 LHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAW 767



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 164/339 (48%), Gaps = 31/339 (9%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
            + P   P    NIL      +K+ D+VL  F  ++    F         ++CF  M   
Sbjct: 71  HLSPKLKPHHVVNIL----QTHKNTDSVLRFFFWISRRKFFKHD------MSCFVSM--- 117

Query: 69  SPGFVVLGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA---FGCKPDVFT 124
                 L R++R   F P       +IK    E  +       +++ +   FG    + +
Sbjct: 118 ------LNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYT--LCS 169

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           +TTL+  L +     +A +++ +M N         +P  +T++T+ + LCK+G V +AK 
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSG------IRPSLLTFNTMINILCKKGRVQEAKL 223

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +   +   +  P+  TYTSLI G C  ++ + A  +F  M+  G  PN VT++ ++N LC
Sbjct: 224 IMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLC 283

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
             G+++EA  +LE M+Q G+ P    Y   +   C  G  + A EL   M+  GC+ ++ 
Sbjct: 284 SEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQ 343

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  LI+G  ++ + E A+ LY +ML+ G+ PT VTYN 
Sbjct: 344 TFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNA 382



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 136/278 (48%), Gaps = 8/278 (2%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D  L+LF ++   G  P   TYN++I+ F K   +S      G++++    P+ +T+TS 
Sbjct: 534 DDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSF 593

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA--LNLFEEMANG 151
           I GLC   R   A  +F ++      P+++TY++LI GLC+ G    A   NL   + + 
Sbjct: 594 IDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH- 652

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
              +G  C+P+  TY+T+  GLC EG   +A +L + M+ + + P    Y +L+ G C  
Sbjct: 653 ---YG--CEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKN 707

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                A  +F  M   G Q ++  +  ++  LCK   ++EA  + + M++     D   +
Sbjct: 708 LKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAW 767

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
             L+DG    G  +   +L   MES  C  +  +Y +L
Sbjct: 768 TVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVML 805



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 11/255 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG--F 72
           P V ++      L +N        +F  +     FP+LYTY+ LI   C+ GR      +
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMY 644

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L R+      P+  T+T+L+KGLC E R  EA  L   ++  G +P    Y  L+ G 
Sbjct: 645 NLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGE 704

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+      ALN+F  M     +  +        Y  +   LCKE F+++A+ +F  M ++
Sbjct: 705 CKNLKVESALNIFYSMDTLGFQLHLS------DYKALICALCKENFIEEAQCIFQTMLEK 758

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           + N D V +T L+ G     + +    L   M  +    N  T+ ++  EL     +D A
Sbjct: 759 HWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLAREL---SALDCA 815

Query: 253 SRLLELMIQIGVRPD 267
            ++ ++  Q+G+  D
Sbjct: 816 IKIPQISQQLGIVKD 830


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 166/330 (50%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI-GLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V  +N L   L K       L L +R+ S  G  PD  TYN LI+ FCK G +  G  
Sbjct: 381 PDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKE 440

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   + +    P+ VT  +L+ G+C   R+  A   F + +  G K D  TYT LIN  C
Sbjct: 441 LFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFC 500

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
              +   A+ LF EM          C PDAI Y T+  G  + G +  A  +  ++K   
Sbjct: 501 NVNNFEKAMELFNEMLKSG------CSPDAIVYYTLISGFSQAGRMADASFVLAELKKLG 554

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I PD V Y +LI GFC  N ++    +  EM + G++P+ +T+N ++    KNG +  A 
Sbjct: 555 IRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQ 614

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR-DVFSYGILING 312
           +++  MI+ GV P  + Y  +++ +CL G  N A E+F  M++   +  +   Y ILIN 
Sbjct: 615 KVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINS 674

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            CKN +++ A+SL  +M   G+ P   TYN
Sbjct: 675 LCKNNKVKSAVSLMEDMKIWGVTPNTTTYN 704



 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 175/330 (53%), Gaps = 15/330 (4%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI-- 78
           N L   LA+  +++ +  L +++  + + P++ T+ ILIN  CK  RV     VL ++  
Sbjct: 309 NSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSG 368

Query: 79  ------LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF-GCKPDVFTYTTLING 131
                 +     PD V + +LI GLC   R  E   L  ++R+  GC PD  TY  LI+G
Sbjct: 369 GKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDG 428

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+ G       LF+EM   N E GV   P+ +T +T+  G+C+ G V  A   F++ + 
Sbjct: 429 FCKAGEIEKGKELFDEM---NKE-GVA--PNVVTVNTLVGGMCRTGRVSSAVNFFVEAQR 482

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             +  D VTYT+LI  FC  N++ +A  LF EM+  G  P+ + +  +++   + G+M +
Sbjct: 483 RGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMAD 542

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           AS +L  + ++G+RPD   YNTL+ GFC T + +R  E+   ME  G   D  +Y  LI 
Sbjct: 543 ASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIA 602

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              KN +++ A  +  +M+  G+ PTV TY
Sbjct: 603 YASKNGDLKFAQKVMRKMIKAGVVPTVATY 632



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 157/325 (48%), Gaps = 13/325 (4%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L +N+  +    LF  +  +G   +    N L+    + G  +    ++ +++     P+
Sbjct: 280 LCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPN 339

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLR--------AFGCKPDVFTYTTLINGLCRTGHT 138
            VTF  LI  +C   R+ +A  +  K+         +   +PDV  Y TLI+GLC+ G  
Sbjct: 340 VVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQ 399

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
              L L E M +  G     C PD ITY+ + DG CK G ++K KELF +M  E + P+V
Sbjct: 400 QEGLGLMERMRSQKG-----CAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNV 454

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VT  +L+ G C     + A   F+E   +G++ + VT+  ++N  C     ++A  L   
Sbjct: 455 VTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNE 514

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M++ G  PDA VY TL+ GF   GR+  A  +   ++  G   D   Y  LI G+C+  +
Sbjct: 515 MLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNK 574

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
                 +  EM   G++P  +TYNT
Sbjct: 575 FHRVFEMLKEMEEAGLKPDTITYNT 599



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 163/338 (48%), Gaps = 9/338 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLS------LFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           P   + +ILF  L K +  + +LS      L  +    G+    +    LI   C+  + 
Sbjct: 227 PNDATGDILFSFLLKRERNEELLSEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKT 286

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
           + G+ +   +++     ++    SL+ GL  E        L  K+     +P+V T+  L
Sbjct: 287 NRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGIL 346

Query: 129 INGLCRTGHTIVALNLFEEMANG--NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           IN +C+      AL + E+M+ G  +G   V  +PD + Y+T+ DGLCK G   +   L 
Sbjct: 347 INHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLM 406

Query: 187 LKMKDEN-INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
            +M+ +    PD +TY  LI GFC A +  + K LF EM  +GV PNVVT N ++  +C+
Sbjct: 407 ERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCR 466

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G++  A        + G++ DA  Y  L++ FC      +A ELF  M  +GC  D   
Sbjct: 467 TGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIV 526

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y  LI+G+ +   +  A  + +E+   GIRP  V YNT
Sbjct: 527 YYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNT 564



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 150/319 (47%), Gaps = 8/319 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M +     P V + N L G + +     + ++ F      G+  D  TY  LIN F
Sbjct: 441 LFDEMNK-EGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAF 499

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C +        +   +L+S  +PDA+ + +LI G     R+ +A+ +  +L+  G +PD 
Sbjct: 500 CNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDT 559

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y TLI G CRT        + +EM     E G+  KPD ITY+T+     K G +  A
Sbjct: 560 VCYNTLIGGFCRTNKFHRVFEMLKEME----EAGL--KPDTITYNTLIAYASKNGDLKFA 613

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMN 241
           +++  KM    + P V TY ++I  +C   + NEA  +F +M     V PN V +N+++N
Sbjct: 614 QKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILIN 673

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCKN K+  A  L+E M   GV P+ + YN +  G      + +  E    M  + C  
Sbjct: 674 SLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNP 733

Query: 302 DVFSYGILINGYCKNKEIE 320
           D  +  IL        EIE
Sbjct: 734 DYITMEILTEWLSAVGEIE 752



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 43/269 (15%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
            T +A +F  L++       + E+  LF  L       + +     ++ L R+G    AL
Sbjct: 155 LTVNAASF--LLRASGRSELVEESLILFNDLDP--SVKNTYLRNVWLSILLRSGRVKDAL 210

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            + +EM   N +    C+P+  T   +   L K    ++ +EL    +DE +N       
Sbjct: 211 KVIDEMFESNDDSN--CRPNDATGDILFSFLLKR---ERNEELL--SEDEIVN------- 256

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
                            L ++  + GV  +      ++  LC+N K +    L   MI++
Sbjct: 257 -----------------LVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKL 299

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G   +++  N+L+ G    G  NR  EL   M       +V ++GILIN  CK + ++ A
Sbjct: 300 GAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDA 359

Query: 323 LSLYSEM--------LSKGIRPTVVTYNT 343
           L +  +M        +S  + P VV YNT
Sbjct: 360 LEVLEKMSGGKESGGISVSVEPDVVIYNT 388


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 171/329 (51%), Gaps = 8/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   + + L   L K  +  +   L  ++   G+ P L+ YN LIN  CK G++     +
Sbjct: 318 PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESL 377

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+ VT++ LI   C   ++  A     K+   G K  V+ Y++LI+G C+
Sbjct: 378 FNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCK 437

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G    A +LF+EM ANG        KP+ + Y+++  G CKEG +  A  L+ +M  + 
Sbjct: 438 LGKLRAAKSLFDEMIANG-------LKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKG 490

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I+P+  T+T+LI G C+AN   EA  LF EM++  V PN VT+NV++   CK G    A 
Sbjct: 491 ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL+ M++ G+ PD   Y  L+ G C TGRV+ A+E    ++      +   +  L++GY
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGY 610

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK   ++ AL    EML +G+   +V Y+
Sbjct: 611 CKEGRLDDALDACREMLGRGVAMDLVCYS 639



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + + +   L + + +   L LF  + S GL PD+Y Y  ++   C++        V
Sbjct: 178 PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREV 237

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +GR+  S       T+   I+GLC   R+ EA  +   L   G + DV TY TL+ GLC+
Sbjct: 238 IGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCK 297

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               +      EEM N   EFG V  P     S + DGL K+G +  A +L  K+K   +
Sbjct: 298 ----VEEFEAGEEMMNEMIEFGFV--PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGV 351

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +  Y +LI   C     +EA+ LF  M  +G+ PN VT++++++  CK GK+D A  
Sbjct: 352 APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALH 411

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  M ++G++     Y++L+ G C  G++  AK LF  M +NG   +V  Y  LI+GYC
Sbjct: 412 FLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYC 471

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K  E+  A  LY EM  KGI P   T+
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTF 498



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 156/325 (48%), Gaps = 6/325 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+    L KN+     + +   L+  GL  D+ TY  L+   CK+     G  ++ 
Sbjct: 250 VATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMN 309

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++   F P     ++L+ GL  +  I  A  L  K++ FG  P +F Y  LIN +C+ G
Sbjct: 310 EMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDG 369

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A +LF  M +  G F     P+ +TYS + D  CK G +D A     KM +  I  
Sbjct: 370 KLDEAESLFNNMGH-KGLF-----PNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKA 423

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            V  Y+SLI G C       AK LF EM+  G++PNVV +  +++  CK G++  A RL 
Sbjct: 424 TVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLY 483

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M   G+ P+   +  L+ G C   R+  A +LF  M     + +  +Y +LI G+CK 
Sbjct: 484 HEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKE 543

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
                A  L  EM+ KG+ P   TY
Sbjct: 544 GNTVRAFELLDEMVEKGLVPDTYTY 568



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 176/391 (45%), Gaps = 64/391 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   + K+   D   SLF  +   GLFP+  TY+ILI+ FCK G++      
Sbjct: 353 PSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHF 412

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG++           ++SLI G C   ++  A +LF ++ A G KP+V  YT+LI+G C+
Sbjct: 413 LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK 472

Query: 135 TGHTIVALNLFEEM-------------------------ANGNGEFGVVCK----PDAIT 165
            G    A  L+ EM                         A  N  FG + +    P+ +T
Sbjct: 473 EGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVT 532

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ + +G CKEG   +A EL  +M ++ + PD  TY  LI G C     +EA+    ++ 
Sbjct: 533 YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQ 592

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEA--------------------------------- 252
            +  + N + F+ +++  CK G++D+A                                 
Sbjct: 593 GEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRR 652

Query: 253 --SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
               LL+ M   G+RPD  +Y T++D     G +  A  L+  M S GC+ +V +Y  LI
Sbjct: 653 SIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALI 712

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           NG CK   ++ A  L  EML+    P   TY
Sbjct: 713 NGLCKIGLMDKAELLCREMLASNSLPNQNTY 743



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 171/409 (41%), Gaps = 76/409 (18%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+  +   P V  +  L     K         L+  +   G+ P+ YT+  LI+  
Sbjct: 447 LFDEMI-ANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGL 505

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   R++    + G ++     P+ VT+  LI+G C E   + A  L  ++   G  PD 
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDT 565

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +TY  LI+GLC TG    A     ++     +   +C      +S +  G CKEG +D A
Sbjct: 566 YTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMC------FSALLHGYCKEGRLDDA 619

Query: 183 K-----------------------------------ELFLKMKDENINPDVVTYTSLIRG 207
                                               +L  +M D+ + PD V YT++I  
Sbjct: 620 LDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDA 679

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL------------ 255
              A +   A  L+  M+ +G  PNVVT+  ++N LCK G MD+A  L            
Sbjct: 680 NAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPN 739

Query: 256 ----------------LELMIQI------GVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
                           +E  IQ+      G   +   YN L+ GFC  GR+  A E+ V+
Sbjct: 740 QNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVN 799

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M  +G   D  SY  +I  YC+  +++ A+ L+  ML++G+ P  V YN
Sbjct: 800 MIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYN 848



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 163/392 (41%), Gaps = 63/392 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L   L           LF  +    + P+  TYN+LI   CK G     F +
Sbjct: 493 PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFEL 552

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD  T+  LI GLC+  R+ EA      L+    K +   ++ L++G C+
Sbjct: 553 LDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCK 612

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC-----------------------------KPDAIT 165
            G    AL+   EM        +VC                             +PD + 
Sbjct: 613 EGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVL 672

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+ D   K G +  A  L+  M  E   P+VVTYT+LI G C     ++A+ L  EM+
Sbjct: 673 YTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREML 732

Query: 226 D----------------------------------QGVQPNVVTFNVIMNELCKNGKMDE 251
                                              +G   N VT+N+++   CK G++ E
Sbjct: 733 ASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQE 792

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A+ +L  MI  G+ PD   Y+T++  +C  G +  A +L+ SM + G   D  +Y  LI 
Sbjct: 793 AAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIY 852

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G C   E+  A  L  +M+ +G++P   TYN+
Sbjct: 853 GCCVTGELTKAFELRDDMMRRGVKPNRATYNS 884



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 76/381 (19%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+  +  P  V ++N+L     K  +      L   +   GL PD YTY  LI+  
Sbjct: 517 LFGEMVEWNVIPNEV-TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGL 575

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA---------------- 106
           C  GRVS     +  +       + + F++L+ G C E R+ +A                
Sbjct: 576 CSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDL 635

Query: 107 -------------------AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
                                L  ++   G +PD   YTT+I+   + G+  +A  L++ 
Sbjct: 636 VCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDI 695

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD---------- 197
           M +        C P+ +TY+ + +GLCK G +DKA+ L  +M   N  P+          
Sbjct: 696 MVSEG------CLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDY 749

Query: 198 ------------------------VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
                                    VTY  LIRGFC      EA  + + M+D G+ P+ 
Sbjct: 750 LTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDC 809

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           ++++ I+ E C+ G + EA +L E M+  GV PD   YN L+ G C+TG + +A EL   
Sbjct: 810 ISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDD 869

Query: 294 MESNGCMRDVFSYGILINGYC 314
           M   G   +  +Y  LI+G C
Sbjct: 870 MMRRGVKPNRATYNSLIHGTC 890



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 143/273 (52%), Gaps = 8/273 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           VC   +++G L + +   +++ L K+++  GL PD   Y  +I+   K G +   F +  
Sbjct: 636 VCYSVLIYGIL-RQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWD 694

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P+ VT+T+LI GLC    + +A  L  ++ A    P+  TY   ++ L   G
Sbjct: 695 IMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEG 754

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +   A+ L + +  G          + +TY+ +  G CK G + +A E+ + M D  I+P
Sbjct: 755 NIEKAIQLHDVLLEG-------FLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISP 807

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D ++Y+++I  +C   D  EA  L+  M+++GV P+ V +N ++   C  G++ +A  L 
Sbjct: 808 DCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELR 867

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           + M++ GV+P+ + YN+L+ G CL   V+   +
Sbjct: 868 DDMMRRGVKPNRATYNSLIHGTCLMSSVSSTAD 900



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 6/263 (2%)

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R C     + F  LI+      R ++   +   +   G  P + T + ++NGL R     
Sbjct: 138 RKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFR 197

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
           +AL+LF+E+ +         +PD   Y+ +   LC+     +A+E+  +M+    +  V 
Sbjct: 198 MALHLFDEIVSSG------LRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVA 251

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY   IRG C      EA  +   +  +G++ +V T+  ++  LCK  + +    ++  M
Sbjct: 252 TYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEM 311

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           I+ G  P  +  + L+DG    G +  A +L   ++  G    +F Y  LIN  CK+ ++
Sbjct: 312 IEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKL 371

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
           + A SL++ M  KG+ P  VTY+
Sbjct: 372 DEAESLFNNMGHKGLFPNDVTYS 394



 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 41/93 (44%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S++ +     +       + L++ + + G+ PD   YN LI   C  G ++  F +
Sbjct: 807 PDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFEL 866

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA 107
              ++R    P+  T+ SLI G C  S +   A
Sbjct: 867 RDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTA 899


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 172/328 (52%), Gaps = 2/328 (0%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN+L G L  +   D    LF ++   G  P+ Y++ IL+  +C+ G  S G  +
Sbjct: 54  PETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLEL 113

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG + R  F+P+ V + +LI   C E +  +A  L  ++R  G  PDV T+   I+ LC 
Sbjct: 114 LGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCS 173

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G  + A  +F +M     E   + +P+ ITY+ +  G CKEG +++A+ LF KMK    
Sbjct: 174 SGKVLEASRIFRDMQ--IDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSEN 231

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +  +Y   + G        EA+ +  EM+D G++PNV ++N++M+ LCKNG + +A  
Sbjct: 232 LMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARM 291

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+ LM   GV PD   Y TL+ G+C TG+V+ A  +   M  +GC  + ++  IL+    
Sbjct: 292 LMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLW 351

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   I  A  L  +M  KG     VT N
Sbjct: 352 KEGRISEAEELLQKMNEKGYVIDTVTCN 379



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 173/384 (45%), Gaps = 56/384 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   SF IL     +       L L   +  +G  P+   YN LI+ FCK G+      +
Sbjct: 89  PNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKL 148

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR---AFGC-KPDVFTYTTLIN 130
           +  + +   +PD VTF + I  LC+  +++EA+ +F  ++     G  +P++ TY  ++ 
Sbjct: 149 VDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLG 208

Query: 131 GLCRTGHTIVALNLFEEMANGNG---------------------EFGVVCK--------P 161
           G C+ G    A  LFE+M                          E  +V K        P
Sbjct: 209 GFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEP 268

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           +  +Y+ + DGLCK G +  A+ L   M    + PD VTYT+L+ G+C+    +EA  + 
Sbjct: 269 NVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVL 328

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            EMM  G  PN  T N+++  L K G++ EA  LL+ M + G   D    N ++DG C  
Sbjct: 329 REMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNN 388

Query: 282 GRVNRAKELFVSMESNG-----------------------CMRDVFSYGILINGYCKNKE 318
           G++++A E+   M ++G                       CM D+ SY  +I+G CK   
Sbjct: 389 GKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGR 448

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           +  A   + EM+ K ++P    Y+
Sbjct: 449 VGEAKKKFIEMMGKNLQPDSAIYD 472



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 150/318 (47%), Gaps = 17/318 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+NI+   L KN        L + + S G+ PD  TY  L++ +C  G+VS    V
Sbjct: 268 PNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNV 327

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R   +P+  T   L+  L  E RI EA  L  K+   G   D  T   +I+GLC 
Sbjct: 328 LREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCN 387

Query: 135 TGHTIVALNLFEEMAN---------GNGEFGVV--------CKPDAITYSTITDGLCKEG 177
            G    A+ +   M           GN   G+V        C PD I+YSTI  GLCK G
Sbjct: 388 NGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAG 447

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            V +AK+ F++M  +N+ PD   Y   I  FC     + A  +  +M  +G    + T+N
Sbjct: 448 RVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYN 507

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            ++  L    ++ E   L++ M + GV PD S+YN ++   C  GRV  A  +   M   
Sbjct: 508 SLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQK 567

Query: 298 GCMRDVFSYGILINGYCK 315
           G   ++ S+ ILI  +CK
Sbjct: 568 GISPNISSFSILIKAFCK 585



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 175/348 (50%), Gaps = 31/348 (8%)

Query: 19  SFNI-LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           S+NI L G +   K  +  L L K +  +G+ P++Y+YNI+++  CK G +    +++  
Sbjct: 237 SYNIWLLGLVRIGKLLEAQLVL-KEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRL 295

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           +  S   PD VT+T+L+ G C   ++ EA  +  ++   GC P+ +T   L+  L + G 
Sbjct: 296 MTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGR 355

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL------------ 185
              A  L ++M     E G V   D +T + + DGLC  G +DKA E+            
Sbjct: 356 ISEAEELLQKM----NEKGYVI--DTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAAL 409

Query: 186 ------FLKMKDENIN-----PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
                 ++ + D++ +     PD+++Y+++I G C A    EAK  FIEMM + +QP+  
Sbjct: 410 GNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSA 469

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
            ++V ++  CK GK+  A R+L+ M + G       YN+L+ G     ++     L   M
Sbjct: 470 IYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEM 529

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              G   DV  Y  +++  C+   ++ A S+  EML KGI P + +++
Sbjct: 530 RERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFS 577



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 111/215 (51%), Gaps = 12/215 (5%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           P ++ Y  L+    + G       L ++M A+G         P+  T++ +   LC  G 
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASG-------VSPETYTFNVLIGLLCDSGC 71

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A+ELF KM ++   P+  ++  L+RG+C A   ++   L  EM   G  PN V +N 
Sbjct: 72  LDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNT 131

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++  CK GK D+A +L++ M + G+ PD   +N  +   C +G+V  A  +F  M+ + 
Sbjct: 132 LISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDE 191

Query: 299 CMR----DVFSYGILINGYCKNKEIEGALSLYSEM 329
            +     ++ +Y +++ G+CK   +E A +L+ +M
Sbjct: 192 VLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKM 226



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 123/291 (42%), Gaps = 43/291 (14%)

Query: 49  FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108
            PDL +Y+ +I+  CK GRV         ++     PD+  +   I   C E +I  A  
Sbjct: 430 MPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFR 489

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           +   +   GC   + TY +LI GL           L +EM     E GV   PD   Y+ 
Sbjct: 490 VLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMR----ERGV--SPDVSIYNN 543

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN------------- 215
           +   LC+ G V  A  +  +M  + I+P++ +++ LI+ FC A D++             
Sbjct: 544 VLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVC 603

Query: 216 ---------------------EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
                                +AK LF   +D+        +  +++ LCK+ K+D+AS 
Sbjct: 604 GHKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASG 663

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL---FVSMESNGCMRD 302
           +L  +I  G   D + +  ++DG    G  + A EL    + M S G +++
Sbjct: 664 ILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEMASEGKVKN 714



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 114/277 (41%), Gaps = 28/277 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S++ +   L K          F  +    L PD   Y++ I+ FCK G++S  F V
Sbjct: 431 PDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRV 490

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +        T+ SLI GL ++++I E   L  ++R  G  PDV  Y  +++ LC 
Sbjct: 491 LKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCE 550

Query: 135 TGHTIVALNLFEEMANGN-----GEFGV-----------------------VCKPDAITY 166
            G    A ++ +EM           F +                       VC      Y
Sbjct: 551 GGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALY 610

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S   + L   G V KAKELF    D + +     Y  LI   C     ++A  +  +++D
Sbjct: 611 SLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLID 670

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           +G   +  +F  +++ L K G   EA  L E M+++ 
Sbjct: 671 KGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEMA 707



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%)

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P +  Y  L+R        +    L  +M+  GV P   TFNV++  LC +G +D+A  L
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            + M + G  P+   +  L+ G+C  G  ++  EL   M   G   +   Y  LI+ +CK
Sbjct: 79  FDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCK 138

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             + + A  L  EM   G+ P VVT+N 
Sbjct: 139 EGKTDDAEKLVDEMRKDGLSPDVVTFNA 166


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 170/329 (51%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +          D    L   +    + PD YTYN LI   C  GR +    V
Sbjct: 124 PDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAV 180

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +LR    PD VT+T L++  C  S   +A  L  ++R  GC PD+ TY  ++NG+C+
Sbjct: 181 LDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 240

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+   + + +    +G  C+P+ ++Y+ +  GLC     + A+EL  +M  +  
Sbjct: 241 EGRVDDAIEFLKNLPS----YG--CEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGC 294

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVT+  LI   C       A  +  ++   G  PN +++N +++  CK  KMD+A  
Sbjct: 295 PPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMA 354

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+LM+  G  PD   YNTL+   C +G V+ A EL   ++  GC   + SY  +I+G  
Sbjct: 355 FLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLT 414

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  + + AL L +EM+SKG++P ++TY+T
Sbjct: 415 KAGKTKEALELLNEMVSKGLQPDIITYST 443



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 175/363 (48%), Gaps = 30/363 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             + D MLR     P V ++ IL     K   Y   + L   +   G  PD+ TYN+++N
Sbjct: 178 LAVLDEMLRRR-CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVN 236

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ GRV      L  +      P+ V++  ++KGLC   R  +A  L  ++   GC P
Sbjct: 237 GICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPP 296

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMA---------NGNGEFGVVCK----------- 160
           +V T+  LI+ LCR G    AL + E++          + N      CK           
Sbjct: 297 NVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFL 356

Query: 161 ---------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    PD ++Y+T+   LC+ G VD A EL  ++KD+   P +++Y ++I G   A
Sbjct: 357 DLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 416

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
               EA  L  EM+ +G+QP+++T++ I   LC+  ++++A R    +  +G+RP+  +Y
Sbjct: 417 GKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 476

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N ++ G C     + A +LF  M  NGCM +  +Y ILI G      I+ A  L  E+ S
Sbjct: 477 NAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCS 536

Query: 332 KGI 334
           +G+
Sbjct: 537 RGV 539



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 150/287 (52%), Gaps = 6/287 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+NI+   L   + ++    L   +   G  P++ T+N+LI+  C+ G V P   V
Sbjct: 261 PNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEV 320

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +I +   TP+++++  L+   C + ++ +A A    + + GC PD+ +Y TL+  LCR
Sbjct: 321 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 380

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G   VA+ L  ++ +        C P  I+Y+T+ DGL K G   +A EL  +M  + +
Sbjct: 381 SGEVDVAVELLHQLKDKG------CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGL 434

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY+++  G C  +   +A   F ++ D G++PN V +N I+  LCK  +   A  
Sbjct: 435 QPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAID 494

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           L   MI  G  P+ S Y  L++G    G +  A++L   + S G +R
Sbjct: 495 LFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVR 541



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 115/249 (46%), Gaps = 18/249 (7%)

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++ L     + EA  L    R    +PD  T   LI  L  +G T  A  +         
Sbjct: 72  LRSLVRRGELDEALRLVGSAR----RPDAGTCAALIKKLSASGRTAEARRVL-------- 119

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                C PD + Y+ +  G C  G +D A+ L  +M    + PD  TY +LIRG C    
Sbjct: 120 ---AACGPDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGR 173

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
              A  +  EM+ +   P+VVT+ +++   CK     +A +LL+ M   G  PD   YN 
Sbjct: 174 TANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNV 233

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           +++G C  GRV+ A E   ++ S GC  +  SY I++ G C  +  E A  L  EM  KG
Sbjct: 234 VVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG 293

Query: 334 IRPTVVTYN 342
             P VVT+N
Sbjct: 294 CPPNVVTFN 302


>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 426

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/297 (36%), Positives = 166/297 (55%), Gaps = 20/297 (6%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+  D+   +ILIN F  + +++  F VL +IL+  + PD VT T+L+KGLC  + + +A
Sbjct: 5   GIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKA 64

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
                 + A G + D  +Y TLINGLC++G T                      PD   Y
Sbjct: 65  LHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKA--------------------PDQFMY 104

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S I + LCK+  V  A +L+ +M  + I PDVVTY +LI GFC      +A  LF EM  
Sbjct: 105 SMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRL 164

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           + + PNV +FN++++ LCK G +     +L +MI+  V+PD    ++L+DG+ L  + N+
Sbjct: 165 KNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANK 224

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A+ +F +M  NG   D+ SY I+ING  K K ++ A+ L+ EM  K + P  +TY+T
Sbjct: 225 ARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYST 281



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 164/342 (47%), Gaps = 21/342 (6%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +   +L++   P  V    +L G L  N      L     + + G   D  +Y  LIN
Sbjct: 30  FSVLAKILKIGYQPDTVTLTTLLKG-LCINNEVKKALHFHDDVIAKGFRLDNVSYGTLIN 88

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G                  PD   ++ +I  LC +  +++A  L+ ++      P
Sbjct: 89  GLCKSGETKA--------------PDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIFP 134

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV TY TLI G C  G    A+ LF EM   N        P+  +++ + DGLCKEG V 
Sbjct: 135 DVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKN------IVPNVCSFNILIDGLCKEGDVK 188

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
             K +   M  +++ PDVVT +SLI G+      N+A+ +F  M   GV  ++ ++N+++
Sbjct: 189 GGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMI 248

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N L K   +DEA  L + M    + PD   Y+TL+DG    GR++   +L   M + G  
Sbjct: 249 NGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRS 308

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +V +Y  L+N  CK+   + A+ +++++  KG  P +VTYN
Sbjct: 309 ANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYN 350



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 157/304 (51%), Gaps = 15/304 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L          +  + LF  +    + P++ ++NILI+  CK G V  G  V
Sbjct: 134 PDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSV 193

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD VT +SLI G     +  +A  +F  +   G   D+ +Y  +INGL +
Sbjct: 194 LAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSK 253

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ LF+EM     +F  +  PD ITYST+ DGL K G +    +L  +M+    
Sbjct: 254 AKMVDEAVILFKEM-----QFKSMT-PDTITYSTLIDGLGKLGRISYVWDLIDEMRATGR 307

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + +V+TY+SL+   C +  ++ A  +F ++ D+G +PN+VT+N++++ LCKNG++ +A  
Sbjct: 308 SANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQE 367

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   ++  G R D  +Y  +++G C     +         E+ GC  +  +Y I+I    
Sbjct: 368 IFHDLLIKGYRLDVRLYTVMINGLCREALFD---------EAYGCTPNAVTYEIIIRALF 418

Query: 315 KNKE 318
           KN +
Sbjct: 419 KNDK 422



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 14/155 (9%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M+   I  D++  + LI  F +    N A  +  +++  G QP+ VT   ++  LC N +
Sbjct: 1   MELRGIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNE 60

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + +A    + +I  G R D   Y TL++G C +G                   D F Y +
Sbjct: 61  VKKALHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKAP--------------DQFMYSM 106

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +IN  CK+K +  A  LY EM+ K I P VVTYNT
Sbjct: 107 IINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNT 141


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 173/336 (51%), Gaps = 6/336 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R   + P   S N L   L+K+ +   V   F  +   G+ P ++TYN++I+  CK G 
Sbjct: 245 MRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGD 304

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +  ++     +PD VT+ SLI G      + E A+LF +++  GC PD+ TY  
Sbjct: 305 LENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNG 364

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LIN  C+      A   F EM N NG      KP+ +TYST+ D  CKEG +  A +LF+
Sbjct: 365 LINCYCKFEKMPRAFEYFSEMKN-NG-----LKPNVVTYSTLIDAFCKEGMMQGAIKLFV 418

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M+   + P+  TYTSLI   C A +  EA  L  +M+  GV+ N+VT+  +++ LCK G
Sbjct: 419 DMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAG 478

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           +M EA  +   M++ G+ P+  VY  L+ G+    R+  A ++   M       D+  YG
Sbjct: 479 RMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYG 538

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +I G+C  +++E    +  EM S+GI    V   T
Sbjct: 539 SIIWGHCSQRKLEETKLILEEMKSRGISANPVISTT 574



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 171/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    + V SLF  +  +G  PD+ TYN LINC+CK  ++   F  
Sbjct: 322 PDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY 381

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  +   P+ VT+++LI   C E  +  A  LF  +R  G  P+ FTYT+LI+  C+
Sbjct: 382 FSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCK 441

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L  +M       GV  K + +TY+ + DGLCK G + +A+E+F  M  + I
Sbjct: 442 AGNLTEAWKLLNDMLQA----GV--KLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI 495

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+   YT+L+ G+  A    +A  +  +M +  ++P+++ +  I+   C   K++E   
Sbjct: 496 SPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKL 555

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +LE M   G+  +  +  T++D +   G+ + A   F  M+  G    + +Y +LI+G C
Sbjct: 556 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC 615

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +E A+  +  MLS G++P V  Y +
Sbjct: 616 KAGIVELAVDYFCRMLSLGLQPNVAVYTS 644



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 162/324 (50%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++LF    +    +     F R+ +    P   + N L++   K G           ++
Sbjct: 222 FDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMI 281

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            +   P   T+  +I  LC E  +  +  LF ++R  G  PDV TY +LI+G  + G   
Sbjct: 282 GAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLE 341

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
              +LF EM +      V C PD ITY+ + +  CK   + +A E F +MK+  + P+VV
Sbjct: 342 EVASLFNEMKD------VGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVV 395

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY++LI  FC       A  LF++M   G+ PN  T+  +++  CK G + EA +LL  M
Sbjct: 396 TYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDM 455

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           +Q GV+ +   Y  L+DG C  GR+  A+E+F SM  +G   +   Y  L++GY K + +
Sbjct: 456 LQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERM 515

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           E A+ +  +M    I+P ++ Y +
Sbjct: 516 EDAMKILKQMTECNIKPDLILYGS 539



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 178/373 (47%), Gaps = 43/373 (11%)

Query: 4   FDYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           F+Y   M  +   P V +++ L     K       + LF  +   GL P+ +TY  LI+ 
Sbjct: 379 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDA 438

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G ++  + +L  +L++    + VT+T+L+ GLC   R++EA  +F  +   G  P+
Sbjct: 439 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 498

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
              YT L++G  +      A+ + ++M   N       KPD I Y +I  G C +  +++
Sbjct: 499 QQVYTALVHGYIKAERMEDAMKILKQMTECN------IKPDLILYGSIIWGHCSQRKLEE 552

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
            K +  +MK   I+ + V  T++I  +  A   ++A   F EM D GV+  +VT+ V+++
Sbjct: 553 TKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLID 612

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G ++ A      M+ +G++P+ +VY +L+DG C    +  AK+LF  M+  G   
Sbjct: 613 GLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTP 672

Query: 302 DVFSYGILINGYCKNKEIEGALSL-----------------------------------Y 326
           D+ ++  LI+G  K+  ++ AL L                                   +
Sbjct: 673 DITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFF 732

Query: 327 SEMLSKGIRPTVV 339
           +EM+ KGI P  V
Sbjct: 733 NEMIEKGILPEEV 745



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 157/318 (49%), Gaps = 6/318 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++  L   L K         +F+ +   G+ P+   Y  L++ + K  R+     +L 
Sbjct: 464 IVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILK 523

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++      PD + + S+I G C++ ++ E   +  ++++ G   +    TT+I+   + G
Sbjct: 524 QMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAG 583

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            +  ALN F+EM +   E  +V      TY  + DGLCK G V+ A + F +M    + P
Sbjct: 584 KSSDALNFFQEMQDVGVEATIV------TYCVLIDGLCKAGIVELAVDYFCRMLSLGLQP 637

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +V  YTSLI G C  N    AK LF EM  +G+ P++  F  +++   K+G + EA  L+
Sbjct: 638 NVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLI 697

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M ++ +  D  VY +L+ GF   G +++A++ F  M   G + +      L+  Y K 
Sbjct: 698 SRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKR 757

Query: 317 KEIEGALSLYSEMLSKGI 334
            +++ A+ L +EM   G+
Sbjct: 758 GQLDEAIELKNEMERMGL 775



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 102/186 (54%)

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           +C   +  +  +     + G +++A E F +M++    P   +   L+     + +    
Sbjct: 214 ICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLV 273

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           +  F +M+  G+ P+V T+NV+++ LCK G ++ + RL   M ++G+ PD   YN+L+DG
Sbjct: 274 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG 333

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           +   G +     LF  M+  GC+ D+ +Y  LIN YCK +++  A   +SEM + G++P 
Sbjct: 334 YGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPN 393

Query: 338 VVTYNT 343
           VVTY+T
Sbjct: 394 VVTYST 399


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 179/330 (54%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN++   + K    D  + +F+ +      PD++TY  L++  CK  R+    ++
Sbjct: 170 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 229

Query: 75  LGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L  + +  CF P +VTF  LI GLC +  ++    L   +   GC P+  TY T+INGLC
Sbjct: 230 LDEMQIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 288

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A++L + M          C P+ +TY T+ +GL K+G       L   +++  
Sbjct: 289 LKGKLDKAVSLLDRMVASK------CVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERG 342

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            + +   Y++LI G        EA  L+ +M+++G QPN+V ++ +++ LC+ GK+DEA 
Sbjct: 343 HHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAK 402

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L  M+  G  P+A  Y++L+ GF  TG   +A  ++  M  N C+ +   Y +LI+G 
Sbjct: 403 EILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGL 462

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C++ ++  A+ +++ ML +G+RP VV Y++
Sbjct: 463 CEDGKLREAMMMWTHMLGRGLRPDVVAYSS 492



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 175/330 (53%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN+L   L K      V  L   +   G  P+  TYN +IN  C  G++     +
Sbjct: 240 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 299

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R++ S   P+ VT+ +LI GL  + R ++   L + L   G   + + Y+TLI+GL +
Sbjct: 300 LDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFK 359

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
              +  A+ L+++M          C+P+ + YS + DGLC+EG +D+AKE+  +M ++  
Sbjct: 360 EEKSEEAMGLWKKMVEKG------CQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGC 413

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY+SLI+GF    +  +A  ++ EM      PN + ++V+++ LC++GK+ EA  
Sbjct: 414 TPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMM 473

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--ESNGCMRDVFSYGILING 312
           +   M+  G+RPD   Y++++ G C  G V    +LF  M  + +    DV +Y IL+  
Sbjct: 474 MWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRA 533

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            CK   I  A+ L + ML +G  P ++T N
Sbjct: 534 LCKQNSISHAIDLLNSMLDRGCNPDLITCN 563



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 147/290 (50%), Gaps = 29/290 (10%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++ L   L K +  +  + L+K++   G  P++  Y+ LI+  C+ G++     +L  +
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 408

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    TP+A T++SLIKG        +A  ++ ++    C P+   Y+ LI+GLC  G  
Sbjct: 409 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 468

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM--KDENINP 196
             A+ ++  M       G   +PD + YS++  GLC  G V+   +LF +M  ++ +  P
Sbjct: 469 REAMMMWTHM------LGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQP 522

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL------CKNGK-- 248
           DVVTY  L+R  C  N  + A  L   M+D+G  P+++T N+ +N L       ++G+  
Sbjct: 523 DVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREF 582

Query: 249 MDE-------------ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           +DE             A++++E+M+Q  + P+AS +  ++   C   +V 
Sbjct: 583 LDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQ 632



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL--KMKDENINPDV 198
           A+ LF  M +   EF   C+    +++++ + + +EG   +A E +        NI+P+V
Sbjct: 118 AIELFGRMVD---EFQ--CRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNV 172

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           +++  +I+  C     + A  +F EM  Q  +P+V T+  +M+ LCK  ++DEA  LL+ 
Sbjct: 173 LSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDE 232

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M   G  P +  +N L++G C  G + R  +L  +M   GC+ +  +Y  +ING C   +
Sbjct: 233 MQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK 292

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A+SL   M++    P  VTY T
Sbjct: 293 LDKAVSLLDRMVASKCVPNDVTYGT 317


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 179/330 (54%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN++   + K    D  + +F+ +      PD++TY  L++  CK  R+    ++
Sbjct: 186 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 245

Query: 75  LGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L  + +  CF P +VTF  LI GLC +  ++    L   +   GC P+  TY T+INGLC
Sbjct: 246 LDEMQIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 304

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A++L + M          C P+ +TY T+ +GL K+G       L   +++  
Sbjct: 305 LKGKLDKAVSLLDRMVASK------CVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERG 358

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            + +   Y++LI G        EA  L+ +M+++G QPN+V ++ +++ LC+ GK+DEA 
Sbjct: 359 HHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAK 418

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L  M+  G  P+A  Y++L+ GF  TG   +A  ++  M  N C+ +   Y +LI+G 
Sbjct: 419 EILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGL 478

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C++ ++  A+ +++ ML +G+RP VV Y++
Sbjct: 479 CEDGKLREAMMMWTHMLGRGLRPDVVAYSS 508



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 175/330 (53%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN+L   L K      V  L   +   G  P+  TYN +IN  C  G++     +
Sbjct: 256 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 315

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R++ S   P+ VT+ +LI GL  + R ++   L + L   G   + + Y+TLI+GL +
Sbjct: 316 LDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFK 375

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
              +  A+ L+++M          C+P+ + YS + DGLC+EG +D+AKE+  +M ++  
Sbjct: 376 EEKSEEAMGLWKKMVEKG------CQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGC 429

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY+SLI+GF    +  +A  ++ EM      PN + ++V+++ LC++GK+ EA  
Sbjct: 430 TPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMM 489

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--ESNGCMRDVFSYGILING 312
           +   M+  G+RPD   Y++++ G C  G V    +LF  M  + +    DV +Y IL+  
Sbjct: 490 MWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRA 549

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            CK   I  A+ L + ML +G  P ++T N
Sbjct: 550 LCKQNSISHAIDLLNSMLDRGCNPDLITCN 579



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 147/290 (50%), Gaps = 29/290 (10%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++ L   L K +  +  + L+K++   G  P++  Y+ LI+  C+ G++     +L  +
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +    TP+A T++SLIKG        +A  ++ ++    C P+   Y+ LI+GLC  G  
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 484

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM--KDENINP 196
             A+ ++  M       G   +PD + YS++  GLC  G V+   +LF +M  ++ +  P
Sbjct: 485 REAMMMWTHM------LGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQP 538

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL------CKNGK-- 248
           DVVTY  L+R  C  N  + A  L   M+D+G  P+++T N+ +N L       ++G+  
Sbjct: 539 DVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREF 598

Query: 249 MDE-------------ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           +DE             A++++E+M+Q  + P+AS +  ++   C   +V 
Sbjct: 599 LDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQ 648



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL--KMKDENINPDV 198
           A+ LF  M +   EF   C+    +++++ + + +EG   +A E +        NI+P+V
Sbjct: 134 AIELFGRMVD---EFQ--CRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNV 188

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           +++  +I+  C     + A  +F EM  Q  +P+V T+  +M+ LCK  ++DEA  LL+ 
Sbjct: 189 LSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDE 248

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M   G  P +  +N L++G C  G + R  +L  +M   GC+ +  +Y  +ING C   +
Sbjct: 249 MQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK 308

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A+SL   M++    P  VTY T
Sbjct: 309 LDKAVSLLDRMVASKCVPNDVTYGT 333


>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
          Length = 574

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 186/363 (51%), Gaps = 40/363 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FNI+     K         + K +++ G+ P + TYN LI+ +CK G+V   + V
Sbjct: 186 PDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHV 245

Query: 75  ---LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
              L  ++++  +PD VTF  LI G C E  I  A  +F ++R  G   +V TY +L++G
Sbjct: 246 DALLKEMIQAGISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSG 305

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVC-------------------------------- 159
           LCR G    ++ L EEM     E G+ C                                
Sbjct: 306 LCREGKVEDSIKLVEEME----ELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRG 361

Query: 160 -KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
            KP+ ITY+T+ DG  + G + +A      M  + I+P+V TY  LI GF  + DW    
Sbjct: 362 MKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVS 421

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  EM ++GV+ +VVT+NV++  LC  G++ +A +LL+ M+++G+ P    YNT+++GF
Sbjct: 422 GLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGF 481

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G    A E+ + ME      +V +Y + +  +CK  +++ A  + +EML KG+ P  
Sbjct: 482 CEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNR 541

Query: 339 VTY 341
           +TY
Sbjct: 542 ITY 544



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 159/332 (47%), Gaps = 9/332 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S N L   L +    D     F+      + PDL+T+NI+I+ FCK G++     V
Sbjct: 151 PSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGDV 210

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRI---MEAAALFTKLRAFGCKPDVFTYTTLING 131
              I      P   T+ +LI G C   ++       AL  ++   G  PDV T+  LING
Sbjct: 211 AKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLING 270

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+  +   A+ +F+EM             + +TY+++  GLC+EG V+ + +L  +M++
Sbjct: 271 YCKEPNITAAIKVFQEMRQQG------IPANVVTYNSLVSGLCREGKVEDSIKLVEEMEE 324

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             +   + T  S++ GFC      EA+     +  +G++PNV+T+N +++   + GKM E
Sbjct: 325 LGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMKE 384

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A+   + M   G+ P+   YN L+ GF  +        L   M+  G   DV +Y +LI 
Sbjct: 385 AAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIG 444

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             C   E+  A+ L  EM+  G+ P  V YNT
Sbjct: 445 ALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNT 476



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 137/263 (52%), Gaps = 9/263 (3%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           + P A +  +L+  L    R+  A   F         PD+FT+  +I+G C+TG     L
Sbjct: 149 YRPSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQ----L 204

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK---AKELFLKMKDENINPDVV 199
               ++A     +GV   P   TY+T+ DG CK G V K      L  +M    I+PDVV
Sbjct: 205 RKAGDVAKNISAWGVA--PSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVV 262

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T+  LI G+C   +   A  +F EM  QG+  NVVT+N +++ LC+ GK++++ +L+E M
Sbjct: 263 TFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEM 322

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            ++G+    S  N++++GFC  G +  A+     +   G   +V +Y  L++GY +  ++
Sbjct: 323 EELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKM 382

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
           + A +    M  KGI P V TYN
Sbjct: 383 KEAAAAKDAMAGKGISPNVKTYN 405



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 142/346 (41%), Gaps = 85/346 (24%)

Query: 15  PPVCSFNILF------GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           P V ++N L       G + K  H D   +L K +   G+ PD+ T+N+LIN +CK   +
Sbjct: 221 PSVATYNTLIDGYCKRGQVGKMYHVD---ALLKEMIQAGISPDVVTFNVLINGYCKEPNI 277

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI------------------------- 103
           +    V   + +     + VT+ SL+ GLC E ++                         
Sbjct: 278 TAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEMEELGLACILSTMNSV 337

Query: 104 ----------MEAAALFTKLRAFGCKPDVFTYTTLINGLCR------------------- 134
                     +EA      +   G KP+V TY TL++G  R                   
Sbjct: 338 LNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGI 397

Query: 135 -----------TGHTIV-----ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
                      TG T          L +EM     E GV  K D +TY+ +   LC +G 
Sbjct: 398 SPNVKTYNCLITGFTTSRDWRSVSGLLDEMK----EKGV--KADVVTYNVLIGALCCKGE 451

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           V KA +L  +M +  + P  V Y ++I GFC   D   A  + + M  +  + NVVT+NV
Sbjct: 452 VRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNV 511

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
            +   CK GKMDEA+ +L  M++ G+ P+   Y  +  G    G V
Sbjct: 512 FLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYV 557



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 114/258 (44%), Gaps = 10/258 (3%)

Query: 92  SLIKGLCAESRIMEAAALFTK---LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           SL   L +E  ++ A  L +    LRA            L+  L R    + A   F   
Sbjct: 83  SLHSLLRSELHVLAAGRLHSPASILRALPASSGPLVADMLVLALARASQPLAAYEAFLLA 142

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                 +    +P A + + +   L +   VD A   F       ++PD+ T+  +I GF
Sbjct: 143 GADCPRY----RPSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGF 198

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN---GKMDEASRLLELMIQIGVR 265
           C      +A  +   +   GV P+V T+N +++  CK    GKM     LL+ MIQ G+ 
Sbjct: 199 CKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGIS 258

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD   +N L++G+C    +  A ++F  M   G   +V +Y  L++G C+  ++E ++ L
Sbjct: 259 PDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKL 318

Query: 326 YSEMLSKGIRPTVVTYNT 343
             EM   G+   + T N+
Sbjct: 319 VEEMEELGLACILSTMNS 336


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 175/321 (54%), Gaps = 10/321 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++  L   L+K       + + + + S    PD  T  +++   C   RV     
Sbjct: 146 PPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARE 205

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT-KLRAFGCKPDVFTYTTLINGL 132
           ++  +L      +A+T+++L+ GLC   R+ EA AL   ++   G  PD+ TY+T+I+GL
Sbjct: 206 LVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGL 265

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A+++FEEM+         C P AITY+++  G C+ G +D+A  L  KM D+
Sbjct: 266 CKAGRLRDAVDIFEEMS---------CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDD 316

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N  PDV+TYT+L+  FC     ++A  LF +M+   + P+VVTF  +++ LC  G+M++A
Sbjct: 317 NCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDA 376

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             LLE + + G  P    YN ++DG+C + +V +A+EL     S G + +  +Y IL+ G
Sbjct: 377 LELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAG 436

Query: 313 YCKNKEIEGALSLYSEMLSKG 333
            C+    + AL    ++ S+G
Sbjct: 437 CCRAGRTDQALQYLDQLNSEG 457



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 13/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P     N++ G L +       L +++++N     PD  TY  L++   K GR+     V
Sbjct: 113 PGTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKAGRLRDAVQV 171

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   PD  T T +++ LC   R+ +A  L  ++   G   +  TY+ L++GLC+
Sbjct: 172 LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 231

Query: 135 TGH--TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
                  VAL L E    G         PD +TYST+ DGLCK G +  A ++F +M   
Sbjct: 232 CERLDEAVALLLGEVTRRG-------FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM--- 281

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           +  P  +TY SLI G+C A D +EA  L  +M+D    P+V+T+  +M+  CK G++D+A
Sbjct: 282 SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDA 341

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L + M+   + PD   + +L+DG C  GR+  A EL   +   GC   +++Y  +++G
Sbjct: 342 YELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDG 401

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           YCK+ ++  A  L ++  S+G  P  VTYN
Sbjct: 402 YCKSNQVRKAEELVADFRSRGFVPNTVTYN 431



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 164/360 (45%), Gaps = 47/360 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF-V 73
           P   +  ++   L      D    L + +   G+  +  TY+ L++  CK  R+     +
Sbjct: 182 PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVAL 241

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +LG + R  FTPD VT++++I GLC   R+ +A  +F ++    C P   TY +LI G C
Sbjct: 242 LLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYC 298

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R G    A+ L  +M + N      C PD ITY+T+    CK G +D A ELF +M    
Sbjct: 299 RAGDMDEAIRLLGKMVDDN------CAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANK 352

Query: 194 INPDVVTYTSLIRG-----------------------------------FCYANDWNEAK 218
           ++PDVVT+TSL+ G                                   +C +N   +A+
Sbjct: 353 LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAE 412

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV--YNTLMD 276
            L  +   +G  PN VT+N+++   C+ G+ D+A + L+ +   G     SV  Y  ++D
Sbjct: 413 ELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILD 472

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
             C  GR + A + +  M   G +    ++  ++   CK  + + A  L  EM+  G  P
Sbjct: 473 ALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTP 532



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 155/317 (48%), Gaps = 11/317 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ +   L K       + +F+ ++     P   TYN LI  +C+ G +     +
Sbjct: 253 PDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA---PTAITYNSLIGGYCRAGDMDEAIRL 309

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG+++     PD +T+T+L+   C   R+ +A  LF ++ A    PDV T+T+L++GLC 
Sbjct: 310 LGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCG 369

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL L EE+          C P   TY+ + DG CK   V KA+EL    +    
Sbjct: 370 EGRMEDALELLEEITRRG------CPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGF 423

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG--VQPNVVTFNVIMNELCKNGKMDEA 252
            P+ VTY  L+ G C A   ++A     ++  +G     +V  + +I++ LC++G+ D+A
Sbjct: 424 VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDA 483

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +  E MIQ G  P A+ + T++   C   +  +A EL   M   G      +   +++ 
Sbjct: 484 VQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSA 543

Query: 313 YCKNKEIEGALSLYSEM 329
           YC+   I+ A  L SE+
Sbjct: 544 YCRAGMIQKADELASEL 560



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 162/332 (48%), Gaps = 13/332 (3%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SP PV   N +   L   +   T ++LF ++  +G       YN LI+  CK   +    
Sbjct: 43  SPDPV-ELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYN-LIHPLCKARLLDEAM 100

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L  +      P  +    +I GLC   R+  A  ++ ++      PD  TYT L++GL
Sbjct: 101 GLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGL 159

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            + G    A+ + +EM +          PD  T + +   LC    VD A+EL  +M   
Sbjct: 160 SKAGRLRDAVQVLQEMVSARH------VPDNTTLTVVVQSLCLGDRVDDARELVEEMLHR 213

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFI-EMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
            +  + +TY++L+ G C     +EA  L + E+  +G  P++VT++ +++ LCK G++ +
Sbjct: 214 GMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRD 273

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  + E   ++   P A  YN+L+ G+C  G ++ A  L   M  + C  DV +Y  L++
Sbjct: 274 AVDIFE---EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMS 330

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +CK   ++ A  L+ +M++  + P VVT+ +
Sbjct: 331 AFCKMGRLDDAYELFQQMVANKLSPDVVTFTS 362



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 141/308 (45%), Gaps = 45/308 (14%)

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG------------- 117
           G ++L  I     +PD V   +++  LC       A ALF K+   G             
Sbjct: 30  GPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYNLIHP 89

Query: 118 -CK--------------------PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
            CK                    P    +  +I GLCR G    AL ++ +M + +    
Sbjct: 90  LCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH---- 145

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
               PD +TY+ +  GL K G +  A ++  +M      PD  T T +++  C  +  ++
Sbjct: 146 ---PPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDD 202

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA-SRLLELMIQIGVRPDASVYNTLM 275
           A+ L  EM+ +G+  N +T++ +++ LCK  ++DEA + LL  + + G  PD   Y+T++
Sbjct: 203 ARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVI 262

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           DG C  GR+  A ++F  M    C     +Y  LI GYC+  +++ A+ L  +M+     
Sbjct: 263 DGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCA 319

Query: 336 PTVVTYNT 343
           P V+TY T
Sbjct: 320 PDVITYTT 327



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 136/268 (50%), Gaps = 10/268 (3%)

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF-TKLRAFGCKPDVFTYTTLINGLCRTG 136
           +L + +  D+ TF  +++GL A +++     L   ++R  G  PD     T++  LC   
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            T  A+ LF++MA    E G V   +  TY  +   LCK   +D+A  L L MK   +NP
Sbjct: 61  DTTTAMALFDKMA----ELGAV---NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNP 113

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
             + +  +I G C A     A  ++ +M D    P+ +T+  +++ L K G++ +A ++L
Sbjct: 114 GTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKAGRLRDAVQVL 172

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M+     PD +    ++   CL  RV+ A+EL   M   G   +  +Y  L++G CK 
Sbjct: 173 QEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKC 232

Query: 317 KEIEGALS-LYSEMLSKGIRPTVVTYNT 343
           + ++ A++ L  E+  +G  P +VTY+T
Sbjct: 233 ERLDEAVALLLGEVTRRGFTPDIVTYST 260



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/105 (20%), Positives = 44/105 (41%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P P  V  + I+   L ++   D  +  ++ +   G  P   T+  ++   CK  +    
Sbjct: 459 PCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQA 518

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
             +L  +++   TP   T  +++   C    I +A  L ++LR +
Sbjct: 519 HELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRLY 563


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 161/294 (54%), Gaps = 6/294 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD+Y+YN +I+ F K  ++     V  R+    F+PD VT+  +I  LC+  ++  A  +
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             +L   GCKP V TYT LI      G    AL LF+E+ +         +PD  TY+ I
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRG------LRPDLYTYNAI 242

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             G+CKEG  D+A +    +     NPDVV+Y  L+R F   + W + + L  +M+  G 
Sbjct: 243 IRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGC 302

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +PNVVT +++++  C+ G++ EA  +LE+M + G+ PD+  Y+ L+  FC  GR++ A E
Sbjct: 303 EPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIE 362

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               M S+GC+ D+ +Y  ++   CK    + AL ++ ++   G  PTV  YNT
Sbjct: 363 YLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNT 416



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 167/331 (50%), Gaps = 10/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N +    +K    D+   +F R+ S G  PD+ TYNI+I   C  G++   F V
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L+    P  +T+T LI+    E RI EA  LF +L + G +PD++TY  +I G+C+
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL+    ++         C PD ++Y+ +      +   +  + L   M     
Sbjct: 249 EGMEDRALDFVRHLSARG------CNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGC 302

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVT++ LI  FC      EA  +   M ++G+ P+  +++ +++  CK G++D A  
Sbjct: 303 EPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIE 362

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY- 313
            LE M+  G  PD   YNT++   C  G  + A ++F  ++  GC   V +Y  + +   
Sbjct: 363 YLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALW 422

Query: 314 -CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            C NK    AL + SEM+ KGI P  +TYN+
Sbjct: 423 SCGNK--IKALEMISEMIRKGIDPDEITYNS 451



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 159/341 (46%), Gaps = 7/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D +L+     P V ++ IL          +  L LF  L S GL PDLYTYN +I 
Sbjct: 186 FEVMDELLK-DGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIR 244

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G        +  +      PD V++  L++    +SR  +   L   +   GC+P
Sbjct: 245 GICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEP 304

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V T++ LI+  CR G    A+N+ E M     E G+   PD+ +Y  +    CKEG +D
Sbjct: 305 NVVTHSILISSFCREGRVREAVNVLEVMK----EKGLT--PDSYSYDPLISAFCKEGRLD 358

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A E   KM  +   PD+V Y +++   C     + A  +F ++ + G  P V  +N + 
Sbjct: 359 LAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMF 418

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L   G   +A  ++  MI+ G+ PD   YN+L+   C  G V+ A  L V ME+    
Sbjct: 419 SALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQ 478

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             V S+ I++ G CK   +   + L   M+ KG  P   +Y
Sbjct: 479 PTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSY 519



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 156/316 (49%), Gaps = 10/316 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   + K    D  L   + L++ G  PD+ +YNIL+  F    R   G  +
Sbjct: 234 PDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERL 293

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++ S   P+ VT + LI   C E R+ EA  +   ++  G  PD ++Y  LI+  C+
Sbjct: 294 MKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCK 353

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +A+   E+M +        C PD + Y+TI   LCK G  D A ++F K+ +   
Sbjct: 354 EGRLDLAIEYLEKMVSDG------CLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGC 407

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V  Y ++        +  +A  +  EM+ +G+ P+ +T+N +++ LC++G +DEA  
Sbjct: 408 PPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIG 467

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M     +P    +N ++ G C   RV    EL ++M   GC+ +  SY +LI G  
Sbjct: 468 LLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIA 527

Query: 315 ----KNKEIEGALSLY 326
               + + +E A SLY
Sbjct: 528 YAGWRAEAMELANSLY 543



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 130/279 (46%), Gaps = 29/279 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+NIL         ++    L K +   G  P++ T++ILI+ FC+ GRV     V
Sbjct: 269 PDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNV 328

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +     TPD+ ++  LI   C E R+  A     K+ + GC PD+  Y T++  LC+
Sbjct: 329 LEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCK 388

Query: 135 TGHTIVALNLFEEMANG---------NGEFGVVCK--------------------PDAIT 165
            G   +AL++FE++            N  F  +                      PD IT
Sbjct: 389 FGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEIT 448

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+++   LC++G VD+A  L + M+     P V+++  ++ G C A+   E   L I M+
Sbjct: 449 YNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMV 508

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           ++G  PN  ++ +++  +   G   EA  L   + ++GV
Sbjct: 509 EKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGV 547



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 111/215 (51%), Gaps = 7/215 (3%)

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L+N  CR G    +L   E + +         KPD +  + +  G      + KA  + +
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKG------FKPDVVLCTKLIKGFFNSRNLKKAMRV-M 120

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++ +   +PDV +Y ++I GF  AN  + A  +F  M  +G  P+VVT+N+++  LC  G
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRG 180

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K++ A  +++ +++ G +P    Y  L++   L GR+N A ELF  + S G   D+++Y 
Sbjct: 181 KLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYN 240

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +I G CK    + AL     + ++G  P VV+YN
Sbjct: 241 AIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYN 275



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++N +F  L    +    L +   +   G+ PD  TYN LI+C C+ G V     
Sbjct: 408 PPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIG 467

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +  + F P  ++F  ++ G+C   R+ E   L   +   GC P+  +Y  LI G+ 
Sbjct: 468 LLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIA 527

Query: 134 RTGHTIVALNLFEEMANGNGEFGVV 158
             G    A+    E+AN     GV+
Sbjct: 528 YAGWRAEAM----ELANSLYRLGVI 548


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 171/330 (51%), Gaps = 7/330 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++  +    +    ++    +F+ +   GL PD+ ++N  ++  CK GR      
Sbjct: 183 PPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAE 242

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +      P+ VT+  L+ G   E    +  + F  ++  G   +   +T LI+   
Sbjct: 243 IFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYA 302

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ +  EM  G G       PD  TYST+   LC+ G +  A + F +M    
Sbjct: 303 KRGMMDEAMLILSEM-QGQG-----LSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTG 356

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-QPNVVTFNVIMNELCKNGKMDEA 252
           + P+ V Y SLI+GFC   D  +AK L  EMM+ G+ +PN+  FN I++ +CK G++ +A
Sbjct: 357 VQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDA 416

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             + +L+  IG R D  ++NTL+DG+CL G + +A  +  +M S G   D F+Y  L+NG
Sbjct: 417 HHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNG 476

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           Y K+  I+  L+L+ EM  K I+PT VTYN
Sbjct: 477 YFKSGRIDDGLNLFREMSDKKIKPTTVTYN 506



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 176/337 (52%), Gaps = 9/337 (2%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           M  +PP + ++ ++     + +  +  L+ F RL   GL  D    N ++ C C   R  
Sbjct: 1   MRVAPPTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTD 60

Query: 70  PGF-VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFG-CKPDVFTYT 126
               V+L R+      PDA ++  ++K LC ++R  +A  L   + +  G C PDV TY 
Sbjct: 61  DAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYN 120

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           T+I+G  + G    A NL+ EM     + G V  PD +T+++I + LCK   VD A+ L 
Sbjct: 121 TVIHGFFKEGKIGKACNLYHEMM----QQGFV--PDVVTHNSIINALCKARAVDNAELLL 174

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M D  + P+ VTYTS+I G+     W EA  +F EM  +G+ P++V++N  M+ LCK+
Sbjct: 175 RQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKH 234

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G+  EA+ +   M   G RP+   Y  L+ G+   G        F +M+ +G + +   +
Sbjct: 235 GRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVF 294

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ILI+ Y K   ++ A+ + SEM  +G+ P V TY+T
Sbjct: 295 TILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYST 331



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 176/402 (43%), Gaps = 79/402 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGL-FPDLYTYNILINCFCKMGRVSPGF 72
           P   S+ I+   L  +      L L + +    G+  PD+ TYN +I+ F K G++    
Sbjct: 77  PDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKAC 136

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   +++  F PD VT  S+I  LC    +  A  L  ++   G  P+  TYT++I+G 
Sbjct: 137 NLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGY 196

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
              G    A  +F EM  G G       PD +++++  D LCK G   +A E+F  M  +
Sbjct: 197 STLGRWEEATKMFREMT-GRGLI-----PDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAK 250

Query: 193 NINPDVVTYTSLIRGF----CYAN-------------------------------DWNEA 217
              P++VTY  L+ G+    C+A+                                 +EA
Sbjct: 251 GHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEA 310

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +  EM  QG+ P+V T++ +++ LC+ G++ +A      MI  GV+P+  VY++L+ G
Sbjct: 311 MLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQG 370

Query: 278 FCLTGRVNRAKELFVSMESNGCMR------------------------------------ 301
           FC  G + +AKEL   M +NG  R                                    
Sbjct: 371 FCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERS 430

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D+  +  LI+GYC   E+  A S+   M+S GI P   TYNT
Sbjct: 431 DIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNT 472



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 164/338 (48%), Gaps = 5/338 (1%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y +      P + ++ IL    A    +  ++S F  +   G+  +   + ILI+ + K 
Sbjct: 245 YSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKR 304

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G +    ++L  +     +PD  T+++LI  LC   R+ +A   F ++   G +P+   Y
Sbjct: 305 GMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVY 364

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            +LI G C  G  + A  L  EM N NG    + +P+   +++I   +CKEG V  A  +
Sbjct: 365 HSLIQGFCTHGDLVKAKELVYEMMN-NG----IPRPNIAFFNSIVHSICKEGRVMDAHHI 419

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F  +KD     D++ + +LI G+C   +  +A  +   M+  G+ P+  T+N ++N   K
Sbjct: 420 FDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFK 479

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           +G++D+   L   M    ++P    YN ++DG    GR   A+++   M   G    + +
Sbjct: 480 SGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPT 539

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y I++ G C+N   + A+ ++ ++ +  ++  + T NT
Sbjct: 540 YNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNT 577



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 163/353 (46%), Gaps = 42/353 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F IL    AK    D  + +   +   GL PD++TY+ LI+  C+MGR++       +++
Sbjct: 294 FTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMI 353

Query: 80  RSCFTPDAVTFTSLIKG------------------------------------LCAESRI 103
            +   P+ V + SLI+G                                    +C E R+
Sbjct: 354 GTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRV 413

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
           M+A  +F  ++  G + D+  + TLI+G C  G    A ++ + M +          PD 
Sbjct: 414 MDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAG------IGPDT 467

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
            TY+T+ +G  K G +D    LF +M D+ I P  VTY  ++ G   A     A+ +  E
Sbjct: 468 FTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHE 527

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+  G   ++ T+N+I+  LC+N   DEA  + + +  + V+ + +  NT+++      R
Sbjct: 528 MIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQR 587

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
              AK+LF ++  +G + +  +YGI+I    K   +E A +++S M   G  P
Sbjct: 588 REEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAP 640



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 124/273 (45%), Gaps = 6/273 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  FN +   + K         +F  +  IG   D+  +N LI+ +C +G +   F V
Sbjct: 395 PNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSV 454

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   PD  T+ +L+ G     RI +   LF ++     KP   TY  +++GL R
Sbjct: 455 LDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFR 514

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T+ A  +  EM    G    V  P   TY+ I  GLC+    D+A  +F K+   N+
Sbjct: 515 AGRTVAAQKMLHEMI---GCGTTVSLP---TYNIILKGLCRNNCTDEAIVMFQKLCTMNV 568

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++ T  ++I          EAK LF  + D G+ PN  T+ +++  L K G ++EA  
Sbjct: 569 KFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADN 628

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           +   M + G  P + + N  +      G + +A
Sbjct: 629 MFSSMEKSGCAPCSRLLNDTIRTLLEKGEIVKA 661


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 174/358 (48%), Gaps = 30/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K K  D    + +++   G+ P+  TYN LI+ +   G       V
Sbjct: 257 PNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRV 316

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S   PD     S +  LC   RI EA  +F  +   G KPDV +Y  L++G   
Sbjct: 317 FKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYAT 376

Query: 135 TGHTIVALNLFEEMA---------------NGNGEFGVVCK--------------PDAIT 165
            G      NLF  M                N     G++ K              PD IT
Sbjct: 377 AGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT 436

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +ST+    C+ G +D A E F  M D  + PD   Y+ LI+G C   D  +AK L  +M+
Sbjct: 437 FSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDML 496

Query: 226 DQGVQPNVVTF-NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
            +G+ P  + F   I+N LCK G++ E   +++L+I  G RP+   +N+L+DG+CL G +
Sbjct: 497 SKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNM 556

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             A  L  SMES G   D+++Y  L++GYCK+  I+ AL+L+ +ML K +  T V+YN
Sbjct: 557 KEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYN 614



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 180/386 (46%), Gaps = 51/386 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDT-------VLSLFKRLNSIG---LFPDL 52
           +FD +L    +P P    N L   LA+              + LFKR++        P +
Sbjct: 130 LFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPTI 189

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
           YTYNILINC+ +  R   G  V GR+LR+   PD  ++ +LI G   E  + +A  LF K
Sbjct: 190 YTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYK 249

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           +   G  P+V TY++LINGLC+T     A  +  +M       G   +P+ +TY+ +  G
Sbjct: 250 MEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMV------GAGVRPNNMTYNCLIHG 303

Query: 173 -----------------------------------LCKEGFVDKAKELFLKMKDENINPD 197
                                              LCK G + +A+++F  M  +   PD
Sbjct: 304 YSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPD 363

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V++Y +L+ G+  A        LF  M+ +GV P+   FN ++N   + G MD++  + E
Sbjct: 364 VISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFE 423

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M + GV PD   ++T++  FC  GR++ A E F  M   G   D   Y  LI G C  +
Sbjct: 424 DMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRR 483

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  A  L S+MLSKGI P  + + T
Sbjct: 484 DLVKAKELISDMLSKGIPPPCIKFFT 509



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 161/353 (45%), Gaps = 42/353 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN L    A+    D  L +F+ +   G+ PD+ T++ +I+ FC++GR+         ++
Sbjct: 402 FNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 461

Query: 80  RSCFTPDAVT------------------------------------FTSLIKGLCAESRI 103
            +   PD                                       FTS+I  LC E R+
Sbjct: 462 DTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRV 521

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
            E   +   +   G +P++ T+ +L++G C  G+   A+ L + M +      V  +PD 
Sbjct: 522 AEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMES------VGVEPDI 575

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
            TY+T+ DG CK G +D A  LF  M  + +    V+Y  ++ G   A     AK +F E
Sbjct: 576 YTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHE 635

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M++ G+  ++ T+  ++  LC+N   DEA+ LLE +  + V+ D   +N ++      GR
Sbjct: 636 MIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGR 695

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
              AKELF ++ + G +  + +Y ++I    K +  E A +L+S M      P
Sbjct: 696 RQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTP 748



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 164/340 (48%), Gaps = 6/340 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M+   P P  V S+  L    A       + +LF  +   G+ PD + +N LIN +
Sbjct: 351 IFDSMVLKGPKPD-VISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 409

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            ++G +    ++   + +    PD +TF+++I   C   R+ +A   F  +   G  PD 
Sbjct: 410 ARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDT 469

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+ LI G C     + A  L  +M +       +  P    +++I + LCKEG V + 
Sbjct: 470 AVYSCLIQGQCNRRDLVKAKELISDMLSKG-----IPPPCIKFFTSIINNLCKEGRVAEG 524

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K++   +      P+++T+ SL+ G+C   +  EA  L   M   GV+P++ T+N +++ 
Sbjct: 525 KDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDG 584

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK+G++D+A  L   M+   V   +  YN ++ G     R   AKE+F  M  +G    
Sbjct: 585 YCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVS 644

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +Y  ++ G C+N   + A  L  ++ S  ++  ++T+N
Sbjct: 645 IHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFN 684



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 149/328 (45%), Gaps = 7/328 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYNILINCFCKMGRVSPGF 72
           PP    ++ L       +       L   + S G+ P  +  +  +IN  CK GRV+ G 
Sbjct: 466 PPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGK 525

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V+  I+ +   P+ +TF SL+ G C    + EA  L   + + G +PD++TY TL++G 
Sbjct: 526 DVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGY 585

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    AL LF +M +            +++Y+ I  GL +      AKE+F +M + 
Sbjct: 586 CKHGRIDDALTLFRDMLHKRVTL------TSVSYNIILHGLFQARRTIVAKEMFHEMIES 639

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            +   + TY +++ G C  N  +EA  L  ++    V+ +++TFN+++  + K G+  EA
Sbjct: 640 GMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEA 699

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L   +   G+ P    Y  ++           A  LF SME + C  D      +I  
Sbjct: 700 KELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRM 759

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVT 340
                E+  A +  S++  KGI P   T
Sbjct: 760 LLNKGEVAKAGNYLSKIDKKGILPEATT 787


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 172/331 (51%), Gaps = 10/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L K +       L + +   G  PD++TY  LI  FCK  +      V
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLC 133
             +++   F PD VT++ LI GLC E R+ EA  LF ++ ++  C P+  TY +LI+G C
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R G    A+NL E MA           PD +TY+T+ +G CK   +D A +L  +M  + 
Sbjct: 172 RMGKMDEAMNLLERMAETGS------SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG 225

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+VVT+TSL+ G C  N  ++A  +  EM  +   P V T+N I++  C+  +++EA 
Sbjct: 226 LTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEAR 285

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +   ++ ++   P+   +N ++ G C   R + A EL        C  DV  Y  +I+  
Sbjct: 286 KF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVL 343

Query: 314 CKNKEIEGALSLYSEMLSK-GIRPTVVTYNT 343
           C+ K+++ A  +Y +ML + G  P  +TY+T
Sbjct: 344 CREKKVDEACRVYRKMLEEPGCLPNSITYST 374



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 126/238 (52%), Gaps = 11/238 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++     P   ++N L     +    D  ++L +R+   G  PD+ TY  L+N F
Sbjct: 146 LFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGF 205

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+ R+   + +L ++ R   TP+ VTFTSL+ GLC E+R+ +A  +  ++R   C P V
Sbjct: 206 CKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV 265

Query: 123 FTYTTLINGLCRTGHTIVALN-LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           +TY T+++G CR      A   + EEM          C P+ ++++ +  GLCK     +
Sbjct: 266 YTYNTILDGYCRVNQLEEARKFMLEEMD---------CPPNVVSFNIMIRGLCKVNRSSE 316

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNV 238
           A EL  + +    NPDVV YT++I   C     +EA  ++ +M+++ G  PN +T++ 
Sbjct: 317 AMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYST 374



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           ++D    P  VTY SLI G C A   +EA  L  EM+  G  P++ T+  ++   CK+ K
Sbjct: 45  VQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKK 104

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYG 307
            D+A R+ E ++  G RPD   Y+ L+DG C  GR+  A +LF  M +S  CM +  +Y 
Sbjct: 105 SDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYN 164

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LI+G+C+  +++ A++L   M   G  P VVTY T
Sbjct: 165 SLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTT 200


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 177/325 (54%), Gaps = 8/325 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
            NI+   L +N      + L + +    + PD+ +YN LIN  CK  ++     +L  + 
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            +   P++VT T+L+ GLC + R+ EA  L   ++  G   DV  Y TLI+G C  G+  
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
               LF+EM       G     + +TYS +  GLC+ G   +A  +   M +  I+PDVV
Sbjct: 121 RGKELFDEM------LGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVV 174

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TYT LI G C       A  L   M+++G +P+ VT+NV+++ LCK G + +A ++L +M
Sbjct: 175 TYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMM 234

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMR-DVFSYGILINGYCKNK 317
           I+ G + D   YNTLM G C  G+V+ A +LF SM ++  C+  +VF++ +LI G CK  
Sbjct: 235 IEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEG 294

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYN 342
            +  A+ ++ +M+ KG    +VTYN
Sbjct: 295 RLTKAVKIHRKMVKKGSCGNLVTYN 319



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/251 (36%), Positives = 138/251 (54%), Gaps = 6/251 (2%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           ++KGLC    + EA  L  ++      PD+ +Y TLINGLC+      A+ L  EM    
Sbjct: 4   VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG 63

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                 C P+++T +T+ DGLCK+G +D+A EL   MK +  + DVV Y +LI GFC   
Sbjct: 64  ------CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNG 117

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           + +  K LF EM+ +G+  NVVT++ +++ LC+ G+  EA+ +L  M + G+ PD   Y 
Sbjct: 118 NLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYT 177

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+DG C  GR   A +L   M   G      +Y +L++G CK   +  A  +   M+ K
Sbjct: 178 GLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK 237

Query: 333 GIRPTVVTYNT 343
           G +  VVTYNT
Sbjct: 238 GKKADVVTYNT 248



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 171/360 (47%), Gaps = 31/360 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N L   L K K     + L   + + G FP+  T   L++  CK GR+     +
Sbjct: 31  PDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMEL 90

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +  F  D V + +LI G C    +     LF ++   G   +V TY+ L++GLCR
Sbjct: 91  LEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCR 150

Query: 135 TGHTIVALNLFEEMANGN---------GEFGVVCK--------------------PDAIT 165
            G    A  +   MA            G    +CK                    P  +T
Sbjct: 151 LGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVT 210

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ +  GLCKEG V  A ++   M ++    DVVTY +L++G C     +EA  LF  M 
Sbjct: 211 YNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMF 270

Query: 226 DQG--VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           D    ++PNV TFN+++  LCK G++ +A ++   M++ G   +   YN L+ G    G+
Sbjct: 271 DNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGK 330

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  A EL+  +   G + + F+Y ILI+G+CK + +  A  L+ EM + G+ P +  YNT
Sbjct: 331 IKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNT 390



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 161/335 (48%), Gaps = 8/335 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V ++  L   L K+      + L   +   G  P   TYN+L++  CK G V  
Sbjct: 167 HGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVID 226

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTL 128
            F +L  ++      D VT+ +L+KGLC + ++ EA  LF  +       +P+VFT+  L
Sbjct: 227 AFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNML 286

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I GLC+ G    A+ +  +M    G  G     + +TY+ +  G  K G + +A EL+ +
Sbjct: 287 IGGLCKEGRLTKAVKIHRKMVK-KGSCG-----NLVTYNMLLGGCLKAGKIKEAMELWKQ 340

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           + D    P+  TY+ LI GFC     N AK LF EM   G+ P +  +N +M  LCK G 
Sbjct: 341 VLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGS 400

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +++A  L + M      PD   +NT++DG    G     KEL + M   G   D  ++  
Sbjct: 401 LEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFST 460

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LIN   K  E++ A S    M++ G  P  + Y++
Sbjct: 461 LINRLSKLGELDEAKSALERMVASGFTPDALVYDS 495



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 151/288 (52%), Gaps = 8/288 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRL--NSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           V ++N L   L      D  L LF  +  N   L P+++T+N+LI   CK GR++    +
Sbjct: 243 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 302

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++++     + VT+  L+ G     +I EA  L+ ++   G  P+ FTY+ LI+G C+
Sbjct: 303 HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCK 362

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                +A  LF EM            P    Y+T+   LCKEG +++AK LF +M + N 
Sbjct: 363 MRMLNIAKGLFCEMRTHG------LNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANC 416

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++++ ++I G   A D+   K L ++M++ G++P+ +TF+ ++N L K G++DEA  
Sbjct: 417 EPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKS 476

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            LE M+  G  PDA VY++L+ G    G       L   M + G + D
Sbjct: 477 ALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLD 524



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 131/265 (49%), Gaps = 6/265 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN+L G L K       + + +++   G   +L TYN+L+    K G++     +
Sbjct: 278 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 337

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L   F P++ T++ LI G C    +  A  LF ++R  G  P +F Y TL+  LC+
Sbjct: 338 WKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK 397

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +LF+EM N N      C+PD I+++T+ DG  K G     KEL +KM +  +
Sbjct: 398 EGSLEQAKSLFQEMGNAN------CEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGL 451

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +T+++LI       + +EAK     M+  G  P+ + ++ ++  L   G   E   
Sbjct: 452 RPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIIN 511

Query: 255 LLELMIQIGVRPDASVYNTLMDGFC 279
           LL  M   G   D  + +T++   C
Sbjct: 512 LLHQMAAKGTVLDRKIVSTILTCLC 536



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R H   P +  +N L   L K    +   SLF+ + +    PD+ ++N +I+   K G 
Sbjct: 376 MRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGD 435

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 +  +++     PDA+TF++LI  L     + EA +   ++ A G  PD   Y +
Sbjct: 436 FQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDS 495

Query: 128 LINGLCRTGHTIVALNLFEEMA 149
           L+ GL   G T   +NL  +MA
Sbjct: 496 LLKGLSSKGDTTEIINLLHQMA 517



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + SFN +     K   +  V  L  ++  +GL PD  T++ LIN   K+G +      
Sbjct: 418 PDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSA 477

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R++ S FTPDA+ + SL+KGL ++    E   L  ++ A G   D    +T++  LC 
Sbjct: 478 LERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCH 537

Query: 135 TGHTIVALNLFEEMANGNGE 154
           +   +  + L      G  E
Sbjct: 538 SIQEVDVMELLPTFFQGTSE 557


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S++ LF  L K +  D  L +F+ L + G   D   Y+ILI  FC  G +     +
Sbjct: 393 PSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKL 452

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++R+   PD   F SL+ G C     + A   F  +   G  P + T   +I+  CR
Sbjct: 453 MEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCR 512

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    ALNL  EM    G F     P+  TY+ + + LCKE   ++A ELF  M   N+
Sbjct: 513 EGRVEEALNLMNEMQT-QGIF-----PNLFTYNAVINRLCKERKSERALELFPLMLKRNV 566

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VV Y++LI GF   ++  +A  L+  M+  GV P++V + +++N LC   +M EA  
Sbjct: 567 LPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYN 626

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M + G+ PD   Y +++ GFC  G + +A  LF  M   G +  V +Y  L++GYC
Sbjct: 627 LFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYC 686

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   I+ A  L  EM  KGI P VVTYN 
Sbjct: 687 KMNRIDIADMLIDEMKRKGITPDVVTYNV 715



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 163/359 (45%), Gaps = 41/359 (11%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N +   L K    D  L + + + S G+ PD+YTY+ILI+ FCK G V  G  ++  + 
Sbjct: 328 YNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMK 387

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            S   P  V+++SL  GLC +     +  +F  L A G K D   Y+ LI G C  G   
Sbjct: 388 YSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLD 447

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L EEM   N        PD   + ++  G CK G    A E F  M +  I P + 
Sbjct: 448 SAHKLMEEMVRNN------LAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIA 501

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T   +I   C      EA  L  EM  QG+ PN+ T+N ++N LCK  K + A  L  LM
Sbjct: 502 TCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLM 561

Query: 260 IQIGVRPDASVYNTLMDGF-----------------------------------CLTGRV 284
           ++  V P   VY+TL+DGF                                   C   R+
Sbjct: 562 LKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRM 621

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A  LF  M  NG   D  SY  +I G+C+  ++  A +L++EML +G  PTVVTY +
Sbjct: 622 CEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTS 680



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 173/366 (47%), Gaps = 47/366 (12%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK--MGRVS----PGF 72
           S N L  CLA+    + + SLF+ + S G  P+++TY I++N +CK   G          
Sbjct: 216 SCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQAT 275

Query: 73  VVLGRILRSCFTPDAVTFT-----------------------------------SLIKGL 97
            +L  + R+  +P  VT++                                   ++I GL
Sbjct: 276 EILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGL 335

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C +  + EA  +  ++++ G  PDV+TY+ LI+G C+ G     L L EEM   N E   
Sbjct: 336 CKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNME--- 392

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              P  ++YS++  GLCK+   D + ++F  +       D   Y+ LI+GFC   D + A
Sbjct: 393 ---PSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSA 449

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             L  EM+   + P+   F  +++  CK G    A     +M++ G+ P  +  N ++D 
Sbjct: 450 HKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDA 509

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  GRV  A  L   M++ G   ++F+Y  +IN  CK ++ E AL L+  ML + + P+
Sbjct: 510 HCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPS 569

Query: 338 VVTYNT 343
           VV Y+T
Sbjct: 570 VVVYST 575



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 7/307 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + M+R + +P P  +F  L     K   +   L  F  +   G+ P + T N++I+  
Sbjct: 452 LMEEMVRNNLAPDP-SNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAH 510

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GRV     ++  +      P+  T+ ++I  LC E +   A  LF  +      P V
Sbjct: 511 CREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSV 570

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+TLI+G  +  ++  AL L+  M     + GV   PD + Y+ + + LC    + +A
Sbjct: 571 VVYSTLIDGFAKQSNSQKALMLYARML----KIGVT--PDMVAYTILINILCHRSRMCEA 624

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF KM +  + PD ++YTS+I GFC   D  +A  LF EM+ +G  P VVT+  +++ 
Sbjct: 625 YNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDG 684

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK  ++D A  L++ M + G+ PD   YN L+      G +++A E+   M+ NG + D
Sbjct: 685 YCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPD 744

Query: 303 VFSYGIL 309
             +Y +L
Sbjct: 745 HMTYMML 751



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 148/367 (40%), Gaps = 117/367 (31%)

Query: 88  VTFTSLIKGLCAESRIMEAA-----------------------------------ALFTK 112
           + F  LIK   A S +  A                                    +LF +
Sbjct: 180 IVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEE 239

Query: 113 LRAFGCKPDVFTYTTLIN-----------------------------------------G 131
           +++ G  P+VFTYT ++N                                         G
Sbjct: 240 MKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYG 299

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LCR G+   AL+    + + NG   V C      Y+ I  GLCK+G +D+A ++  +MK 
Sbjct: 300 LCRVGYVESALDFVRSLISANGLVNVYC------YNAIIHGLCKKGELDEALKVLEEMKS 353

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK------ 245
             I+PDV TY+ LI GFC   D  +   L  EM    ++P++V+++ + + LCK      
Sbjct: 354 CGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDI 413

Query: 246 -----------------------------NGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
                                         G +D A +L+E M++  + PD S + +L+ 
Sbjct: 414 SLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVH 473

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           GFC  G    A E F  M   G +  + +  ++I+ +C+   +E AL+L +EM ++GI P
Sbjct: 474 GFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFP 533

Query: 337 TVVTYNT 343
            + TYN 
Sbjct: 534 NLFTYNA 540



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 203 SLIRGF-CYANDWN-EAKCLFIEMMD--QGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           +L+R   CY N  N +A  LF  +++  +    +V+ F++++     N  ++ A  +   
Sbjct: 145 ALLRDIVCYYNKVNLDAFELFPILLESPKDAARSVIVFDLLIKVFAANSMLENAVDVFLQ 204

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK- 317
             + G+       N L+       R    + LF  M+S G   +VF+Y I++N YCK   
Sbjct: 205 AKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNF 264

Query: 318 -----EIEGALSLYSEMLSKGIRPTVVTYNT 343
                +   A  +  EM   G  PTVVTY+T
Sbjct: 265 GEADIDTRQATEILEEMERNGESPTVVTYST 295


>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 360

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/292 (34%), Positives = 167/292 (57%), Gaps = 7/292 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M++  P P  +  F+ L   +AK   +D V+SL +++ ++G+  +LYTY+I IN F
Sbjct: 62  LFGDMVKSRPFPS-IVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYF 120

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  ++S    +LG++++  + P  VT  SL+ G C  +RI EA AL  ++   G +PD 
Sbjct: 121 CRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 180

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+TTL++GL +      A+ L E M          C+PD +TY  + +GLCK G  D A
Sbjct: 181 VTFTTLVHGLFQHNKASEAVALVERMVVKG------CQPDLVTYGAVINGLCKRGEPDLA 234

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L  KM+   I  DVV Y ++I G C     ++A  LF +M  +G++P+V T+N +++ 
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           LC  G+  +ASRLL  M++  + PD   +N L+D F   G++  A++L+  M
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEM 346



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 138/271 (50%), Gaps = 8/271 (2%)

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + G +++S   P  V F+ L+  +   ++     +L  +++  G   +++TY+  IN  C
Sbjct: 62  LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFC 121

Query: 134 RTGHTIVALNLFEEMAN-GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           R     +AL +  +M   G G       P  +T +++ +G C    + +A  L  +M + 
Sbjct: 122 RRSQLSLALAILGKMMKLGYG-------PSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              PD VT+T+L+ G    N  +EA  L   M+ +G QP++VT+  ++N LCK G+ D A
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             LL  M +  +  D  +YNT++DG C    ++ A +LF  ME+ G   DVF+Y  LI+ 
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            C       A  L S+ML K I P +V +N 
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNA 325



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 128/251 (50%), Gaps = 6/251 (2%)

Query: 92  SLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151
           +L + +  + ++ +A  LF  +      P +  ++ L++ + +     + ++L E+M N 
Sbjct: 45  NLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQN- 103

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
               G+    +  TYS   +  C+   +  A  +  KM      P +VT  SL+ GFC+ 
Sbjct: 104 ---LGI--SHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHG 158

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N  +EA  L  +M++ G QP+ VTF  +++ L ++ K  EA  L+E M+  G +PD   Y
Sbjct: 159 NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 218

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             +++G C  G  + A  L   ME      DV  Y  +I+G CK K ++ A  L+++M +
Sbjct: 219 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMET 278

Query: 332 KGIRPTVVTYN 342
           KGI+P V TYN
Sbjct: 279 KGIKPDVFTYN 289



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 4/195 (2%)

Query: 153 GEFGVVCK----PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           G FG + K    P  + +S +   + K    D    L  +M++  I+ ++ TY+  I  F
Sbjct: 61  GLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYF 120

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C  +  + A  +  +MM  G  P++VT N ++N  C   ++ EA  L++ M+++G +PD 
Sbjct: 121 CRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 180

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             + TL+ G     + + A  L   M   GC  D+ +YG +ING CK  E + AL+L ++
Sbjct: 181 VTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 240

Query: 329 MLSKGIRPTVVTYNT 343
           M    I   VV YNT
Sbjct: 241 MEKGKIEADVVIYNT 255



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 63/145 (43%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  +   L K    D  L+L  ++    +  D+  YN +I+  CK   +   F +
Sbjct: 213 PDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDL 272

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++      PD  T+  LI  LC   R  +A+ L + +      PD+  +  LI+   +
Sbjct: 273 FNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVK 332

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC 159
            G  + A  L++EM   + +   VC
Sbjct: 333 EGKLVEAEKLYDEMVKRSIDPSFVC 357



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 64/129 (49%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           ++A  LF +M+     P++V F+ +++ + K  K D    L E M  +G+  +   Y+  
Sbjct: 57  DDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIF 116

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++ FC   +++ A  +   M   G    + +   L+NG+C    I  A++L  +M+  G 
Sbjct: 117 INYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 176

Query: 335 RPTVVTYNT 343
           +P  VT+ T
Sbjct: 177 QPDTVTFTT 185



 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 53/102 (51%)

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           ++ ++ K+D+A  L   M++    P    ++ L+       + +    L   M++ G   
Sbjct: 49  KVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISH 108

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++++Y I IN +C+  ++  AL++  +M+  G  P++VT N+
Sbjct: 109 NLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNS 150


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 174/358 (48%), Gaps = 30/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K K  D    + +++   G+ P+  TYN LI+ +   G       V
Sbjct: 186 PNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRV 245

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S   PD     S +  LC   RI EA  +F  +   G KPDV +Y  L++G   
Sbjct: 246 FKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYAT 305

Query: 135 TGHTIVALNLFEEMA---------------NGNGEFGVVCK--------------PDAIT 165
            G      NLF  M                N     G++ K              PD IT
Sbjct: 306 AGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT 365

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +ST+    C+ G +D A E F  M D  + PD   Y+ LI+G C   D  +AK L  +M+
Sbjct: 366 FSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDML 425

Query: 226 DQGVQPNVVTF-NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
            +G+ P  + F   I+N LCK G++ E   +++L+I  G RP+   +N+L+DG+CL G +
Sbjct: 426 SKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNM 485

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             A  L  SMES G   D+++Y  L++GYCK+  I+ AL+L+ +ML K +  T V+YN
Sbjct: 486 KEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYN 543



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 180/386 (46%), Gaps = 51/386 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDT-------VLSLFKRLNSIG---LFPDL 52
           +FD +L    +P P    N L   LA+              + LFKR++        P +
Sbjct: 59  LFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPALAVELFKRMDRCACPEAAPTI 118

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
           YTYNILINC+ +  R   G  V GR+LR+   PD  ++ +LI G   E  + +A  LF K
Sbjct: 119 YTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYK 178

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           +   G  P+V TY++LINGLC+T     A  +  +M       G   +P+ +TY+ +  G
Sbjct: 179 MEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMV------GAGVRPNNMTYNCLIHG 232

Query: 173 -----------------------------------LCKEGFVDKAKELFLKMKDENINPD 197
                                              LCK G + +A+++F  M  +   PD
Sbjct: 233 YSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPD 292

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V++Y +L+ G+  A        LF  M+ +GV P+   FN ++N   + G MD++  + E
Sbjct: 293 VISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFE 352

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M + GV PD   ++T++  FC  GR++ A E F  M   G   D   Y  LI G C  +
Sbjct: 353 DMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRR 412

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  A  L S+MLSKGI P  + + T
Sbjct: 413 DLVKAKELISDMLSKGIPPPCIKFFT 438



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 162/358 (45%), Gaps = 42/358 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    FN L    A+    D  L +F+ +   G+ PD+ T++ +I+ FC++GR+      
Sbjct: 326 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK 385

Query: 75  LGRILRSCFTPDAVT------------------------------------FTSLIKGLC 98
              ++ +   PD                                       FTS+I  LC
Sbjct: 386 FNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC 445

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
            E R+ E   +   +   G +P++ T+ +L++G C  G+   A+ L + M +      V 
Sbjct: 446 KEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMES------VG 499

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
            +PD  TY+T+ DG CK G +D A  LF  M  + +    V+Y  ++ G   A     AK
Sbjct: 500 VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAK 559

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            +F EM++ G+  ++ T+  ++  LC+N   DEA+ LLE +  + V+ D   +N ++   
Sbjct: 560 EMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAM 619

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
              GR   AKELF ++ + G +  + +Y ++I    K +  E A +L+S M      P
Sbjct: 620 FKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTP 677



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 164/340 (48%), Gaps = 6/340 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M+   P P  V S+  L    A       + +LF  +   G+ PD + +N LIN +
Sbjct: 280 IFDSMVLKGPKPD-VISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 338

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            ++G +    ++   + +    PD +TF+++I   C   R+ +A   F  +   G  PD 
Sbjct: 339 ARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDT 398

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+ LI G C     + A  L  +M +       +  P    +++I + LCKEG V + 
Sbjct: 399 AVYSCLIQGQCNRRDLVKAKELISDMLSKG-----IPPPCIKFFTSIINNLCKEGRVAEG 453

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K++   +      P+++T+ SL+ G+C   +  EA  L   M   GV+P++ T+N +++ 
Sbjct: 454 KDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDG 513

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK+G++D+A  L   M+   V   +  YN ++ G     R   AKE+F  M  +G    
Sbjct: 514 YCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVS 573

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +Y  ++ G C+N   + A  L  ++ S  ++  ++T+N
Sbjct: 574 IHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFN 613



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 149/328 (45%), Gaps = 7/328 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYNILINCFCKMGRVSPGF 72
           PP    ++ L       +       L   + S G+ P  +  +  +IN  CK GRV+ G 
Sbjct: 395 PPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGK 454

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V+  I+ +   P+ +TF SL+ G C    + EA  L   + + G +PD++TY TL++G 
Sbjct: 455 DVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGY 514

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    AL LF +M +            +++Y+ I  GL +      AKE+F +M + 
Sbjct: 515 CKHGRIDDALTLFRDMLHKRVTL------TSVSYNIILHGLFQARRTIVAKEMFHEMIES 568

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            +   + TY +++ G C  N  +EA  L  ++    V+ +++TFN+++  + K G+  EA
Sbjct: 569 GMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEA 628

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L   +   G+ P    Y  ++           A  LF SME + C  D      +I  
Sbjct: 629 KELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRM 688

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVT 340
                E+  A +  S++  KGI P   T
Sbjct: 689 LLNKGEVAKAGNYLSKIDKKGILPEATT 716


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 160/294 (54%), Gaps = 6/294 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD YTYN LI   C  GR +    VL  +LR    PD VT+T L++  C  S   +A  L
Sbjct: 30  PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 89

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             ++R  GC PD+ TY  ++NG+C+ G    A+   + + +    +G  C+P+ ++Y+ +
Sbjct: 90  LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPS----YG--CEPNTVSYNIV 143

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GLC     + A+EL  +M  +   P+VVT+  LI   C       A  +  ++   G 
Sbjct: 144 LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 203

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PN +++N +++  CK  KMD+A   L+LM+  G  PD   YNTL+   C +G V+ A E
Sbjct: 204 TPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVE 263

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L   ++  GC   + SY  +I+G  K  + + AL L +EM+SKG++P ++TY+T
Sbjct: 264 LLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYST 317



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 168/341 (49%), Gaps = 7/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             + D MLR     P V ++ IL     K   Y   + L   +   G  PD+ TYN+++N
Sbjct: 52  LAVLDEMLRRR-CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVN 110

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ GRV      L  +      P+ V++  ++KGLC   R  +A  L  ++   GC P
Sbjct: 111 GICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPP 170

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V T+  LI+ LCR G    AL + E++     ++G  C P++++Y+ +    CK+  +D
Sbjct: 171 NVVTFNMLISFLCRKGLVEPALEVLEQIP----KYG--CTPNSLSYNPLLHAFCKQKKMD 224

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA      M      PD+V+Y +L+   C + + + A  L  ++ D+G  P ++++N ++
Sbjct: 225 KAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVI 284

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L K GK  EA  LL  M+  G++PD   Y+T+  G C   R+  A   F  ++  G  
Sbjct: 285 DGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIR 344

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +   Y  +I G CK +E   A+ L++ M+  G  P   TY
Sbjct: 345 PNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 385



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 119/262 (45%), Gaps = 43/262 (16%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +FN+L   L +    +  L + +++   G  P+  +YN L++ FCK  ++     
Sbjct: 169 PPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMA 228

Query: 74  VLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            L  ++ R C+ PD V++ +L+  LC    +  A  L  +L+  GC P + +Y T+I+GL
Sbjct: 229 FLDLMVSRGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGL 287

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            + G T  AL L  EM +         +PD ITYSTI  GLC+E  ++ A   F K++D 
Sbjct: 288 TKAGKTKEALELLNEMVSKG------LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM 341

Query: 193 NINPDVV-----------------------------------TYTSLIRGFCYANDWNEA 217
            I P+ V                                   TYT LI G  Y     EA
Sbjct: 342 GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 401

Query: 218 KCLFIEMMDQGVQPNVVTFNVI 239
           + L  E+  +  +  ++  ++I
Sbjct: 402 RDLLDELCSRAGEEILLDVHLI 423


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 180/390 (46%), Gaps = 49/390 (12%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF  M       P V +FN L   L   +       LF+ +   G  P++ +Y+ L++  
Sbjct: 130 IFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGL 189

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR+     +   ++     PD V +TS + GLC  +R+ EA     K+   G K D 
Sbjct: 190 CKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADA 249

Query: 123 FTYTTLINGLCRTGHTIVALN-----------------LFEEMANGNGE---------FG 156
             ++T+I  LC+ GH   A N                  FEEM + N             
Sbjct: 250 VAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIH 309

Query: 157 VVCK----PDAI-------------------TYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            VCK    PD +                   TY+ + D LCK   +D+A+EL  +M +  
Sbjct: 310 AVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYG 369

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           ++PDVVTY++L+ G C     + A  L  EM  +GV P+  T   I+N L K GK+D A 
Sbjct: 370 LSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYAL 429

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             LE M   G  PD   YNTL+DG C  GR++ A      M +  C  DVFSY I+I   
Sbjct: 430 SHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITAL 489

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C++ +  GA +++ EM+ +G+ P  V Y++
Sbjct: 490 CRSGQAAGAHAIFQEMVKRGVLPDTVLYHS 519



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 186/362 (51%), Gaps = 27/362 (7%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD++ R       V ++N     LAK          F+++   G  PD +TY+I++   
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGL 83

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA-FGCKPD 121
           CK G +     +LG++  S    + +T++ +I G C  SR+ +A  +F  + +  GC PD
Sbjct: 84  CKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPD 143

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V T+ +L+ GLC       A  LFE MA         C+P+ I+YST+ DGLCK G +D+
Sbjct: 144 VVTFNSLLKGLCSGERMSEAFVLFEYMAKAG------CEPNVISYSTLLDGLCKAGRLDE 197

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF----- 236
           A  L+ +M +++  PD+V YTS + G C AN   EA     +M+ +G + + V F     
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIG 257

Query: 237 ------------NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
                       N ++  LC++G +DEA +  E MI     P A ++NTL+   C + R+
Sbjct: 258 ILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRL 317

Query: 285 NRAKELFVSMESNG---CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                LF  M+S     C  ++ +Y I+++  CK K+++ A  L +EM + G+ P VVTY
Sbjct: 318 PDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTY 377

Query: 342 NT 343
           + 
Sbjct: 378 SA 379



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 169/348 (48%), Gaps = 27/348 (7%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V +++++     K    D  L +FK ++S G   PD+ T+N L+   C   R+S  FV+ 
Sbjct: 108 VITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLF 167

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             + ++   P+ +++++L+ GLC   R+ EA  L+ ++    C PD+  YT+ + GLC+ 
Sbjct: 168 EYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKA 227

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI-----------------TDGLCKEGF 178
                A +   +M           K DA+ +ST+                  + LC+ G 
Sbjct: 228 NRVAEACDCCRKMVTKGS------KADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGM 281

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG---VQPNVVT 235
           +D+A + F +M   N  P    + +LI   C +    +   LF  M         PN+ T
Sbjct: 282 LDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLET 341

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N++++ LCK  ++DEA  L+  M   G+ PD   Y+ L+DG C  G+++RA +L   M 
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   D F+   ++N   K  +++ ALS    M ++G  P +VTYNT
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNT 449



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 169/330 (51%), Gaps = 17/330 (5%)

Query: 4   FDYML-RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF---PDLYTYNILI 59
           F+ M+ R HP  P    FN L   + K+K     + LF+R+ S+  F   P+L TYNI++
Sbjct: 289 FEEMISRNHP--PSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMV 346

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +  CK  ++     ++  +     +PD VT+++L+ GLC   ++  A  L  ++   G  
Sbjct: 347 DNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVF 406

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           PD FT  +++N L + G    AL+  E M A G+        PD +TY+T+ DGLCK G 
Sbjct: 407 PDSFTDASILNALSKAGKVDYALSHLETMKARGS-------TPDLVTYNTLLDGLCKAGR 459

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D+A     KM      PDV +YT +I   C +     A  +F EM+ +GV P+ V ++ 
Sbjct: 460 IDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHS 519

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ L +NG  D A   LEL+     +PD  ++  ++DG C  G+   A E+   M   G
Sbjct: 520 LLDGLARNGLEDLA---LELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAG 576

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSE 328
              D F+Y  +++G  K  +++ A  L  +
Sbjct: 577 FPADAFTYISVVSGLRKLGKVDKARQLVDD 606



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 161/324 (49%), Gaps = 12/324 (3%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI-- 78
           N +   L ++   D     F+ + S    P    +N LI+  CK  R+  G ++  R+  
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKS 329

Query: 79  LRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           ++  +  P+  T+  ++  LC   ++ EA  L  ++  +G  PDV TY+ L++GLC+ G 
Sbjct: 330 MKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGK 389

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A +L EEM+   G F     PD+ T ++I + L K G VD A      MK     PD
Sbjct: 390 LDRACDLLEEMSK-EGVF-----PDSFTDASILNALSKAGKVDYALSHLETMKARGSTPD 443

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           +VTY +L+ G C A   +EA     +M+     P+V ++ +I+  LC++G+   A  + +
Sbjct: 444 LVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ 503

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M++ GV PD  +Y++L+DG    G  + A EL   ++++ C  D   + ++++G CK  
Sbjct: 504 EMVKRGVLPDTVLYHSLLDGLARNGLEDLALEL---LKTSLCKPDFVMHKMVLDGLCKAG 560

Query: 318 EIEGALSLYSEMLSKGIRPTVVTY 341
           + E A  +   M   G      TY
Sbjct: 561 KAEDACEVVERMADAGFPADAFTY 584


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 170/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L   L K++  D  L +F  L    L PD + YNI++N   K  RV     +
Sbjct: 666 PLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKL 725

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PD  T+TSL+ GL    R+ EA  +FTK+   G +PDV  YT+L++ L +
Sbjct: 726 VDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGK 785

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL +F  MA         C PD +TYS++ D L KEG V++A   F     +  
Sbjct: 786 GGKLSHALIIFRAMAKKR------CVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGC 839

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V  Y+SLI  F      + A  LF EM  +   PN+VT+N +++ L K G+++ A +
Sbjct: 840 TPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEK 899

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE M ++G  PD   YN L+DG    G V+ A+  F  M+  G + DV ++  LI    
Sbjct: 900 LLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLG 959

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K  ++  A  L+  M  +G  P+VVTYN
Sbjct: 960 KVDKLLEACELFDSMEEEGYNPSVVTYN 987



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 169/343 (49%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             +FD M+R       V +++++  CL K+   D  L +F R+   G+ P L  Y  L++
Sbjct: 618 LSLFDEMVR-KGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLS 676

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K  ++     +   +  S   PD   +  ++ GL   +R+ EA  L   ++     P
Sbjct: 677 SLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILP 736

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+FTYT+L++GL ++G    A N+F +M     E      PD + Y+++ D L K G + 
Sbjct: 737 DLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHE------PDVVAYTSLMDVLGKGGKLS 790

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  +F  M  +   PDVVTY+SLI          EA   F   + +G  PNV  ++ ++
Sbjct: 791 HALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLI 850

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   K G +D A  L E M +    P+   YN L+ G    GR+N A++L   ME  GC+
Sbjct: 851 DSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCV 910

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D+ +Y ILI+G  K   ++ A S +  M  KGI P V+T+ +
Sbjct: 911 PDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTS 953



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +++ H   P V ++  L   L K    D  +SL + +   G  P + TY+ L+  F K  
Sbjct: 553 VMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRD 612

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +      +   ++R     D  T++ +I  LC    + +A  +F +++  G +P +  Y 
Sbjct: 613 QEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYK 672

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TL++ L +      AL +F E+   +        PD   Y+ + +GL K   VD+A +L 
Sbjct: 673 TLLSSLVKDEKIDFALQIFNELQESS------LVPDTFVYNIMVNGLVKSNRVDEACKLV 726

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             MK++NI PD+ TYTSL+ G   +    EA  +F +M ++G +P+VV +  +M+ L K 
Sbjct: 727 DSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKG 786

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           GK+  A  +   M +    PD   Y++L+D     GRV  A   F +  S GC  +V  Y
Sbjct: 787 GKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVY 846

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             LI+ + K   ++ AL L+ EM  +   P +VTYN
Sbjct: 847 SSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYN 882



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 150/295 (50%), Gaps = 6/295 (2%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + ++  L   L K+   +   ++F ++   G  PD+  Y  L++   K G++S   ++
Sbjct: 736  PDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALII 795

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               + +    PD VT++SLI  L  E R+ EA   F    + GC P+V  Y++LI+   +
Sbjct: 796  FRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGK 855

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G    AL LFEEM          C P+ +TY+ +  GL K G ++ A++L  +M+    
Sbjct: 856  KGMVDRALELFEEMQRRQ------CPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGC 909

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PD+VTY  LI G       +EA+  F  M ++G+ P+V+TF  ++  L K  K+ EA  
Sbjct: 910  VPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACE 969

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            L + M + G  P    YN L+D     G+V+ A  +F  M+  GCM D  + GI+
Sbjct: 970  LFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 164/360 (45%), Gaps = 37/360 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L K    D    LFK +   GL P+L TYNI+I+   K GR    + +
Sbjct: 390 PDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQL 449

Query: 75  LGRILRSCFTPDAVTFTSLIK----------------------GLCAESR--------IM 104
              +      PD  T+ +LI                       G C  SR         +
Sbjct: 450 FHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTI 509

Query: 105 EAAALFTKLRAFGCKP-DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
           E A    +  + G K     TY TL++     GH   A+ L E M          C P  
Sbjct: 510 EGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHE------CIPTV 563

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY+T+ DGL K G +D+A  L  +M+ +   P VVTY+SL+  F   +   E+  LF E
Sbjct: 564 VTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDE 623

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+ +G   +V T+++++N LCK+  +D+A  +   M + G+ P    Y TL+       +
Sbjct: 624 MVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEK 683

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A ++F  ++ +  + D F Y I++NG  K+  ++ A  L   M ++ I P + TY +
Sbjct: 684 IDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTS 743



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 172/360 (47%), Gaps = 37/360 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NI+   L K         LF  L   G  PD++TYN LI+   K G++     +
Sbjct: 425 PNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAI 484

Query: 75  LGRIL------------------------RSCFTPD-------AVTFTSLIKGLCAESRI 103
           +  ++                        R+   P         +T+ +L+        +
Sbjct: 485 IKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHV 544

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
            EA  L   ++   C P V TYTTL++GL + G    A++L  EM          C+P  
Sbjct: 545 DEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQG------CEPSV 598

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TYS++     K    +++  LF +M  +    DV TY+ +I   C ++D ++A  +F  
Sbjct: 599 VTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGR 658

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M ++G++P +  +  +++ L K+ K+D A ++   + +  + PD  VYN +++G   + R
Sbjct: 659 MKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNR 718

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V+ A +L  SM++   + D+F+Y  L++G  K+  +E A +++++M  +G  P VV Y +
Sbjct: 719 VDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTS 778



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 148/332 (44%), Gaps = 6/332 (1%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C F +  +       V ++ ++   LA  +  D V+ +   +   G    ++    L+  
Sbjct: 167 CFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRT 226

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           F     VS    +  ++      P    +  +++ L        A  +F KL  F  +PD
Sbjct: 227 FGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPD 286

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             T+   ++   R+G    A    +EM            P   T++ + D L K G +D+
Sbjct: 287 AQTFRIFVHSFNRSGRLDPAAEPIQEMIKSG------IDPGVHTFTVLIDALVKSGNIDE 340

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A + F  MK+   +P+VVTYT+L+ G   A    EA  +F+EM +    P+ + +N +++
Sbjct: 341 ACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLID 400

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            L K G+ D A  L + M   G+ P+   YN ++      GR   A +LF  ++  G + 
Sbjct: 401 GLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVP 460

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           DVF+Y  LI+   K  +++  L++  EM+ KG
Sbjct: 461 DVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG 492



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 6/290 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           TY ++I              +L  + +          TSL++   + + +  A  +F ++
Sbjct: 184 TYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQM 243

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
           ++FGC P    Y  ++  L + G    A+ +F ++    G+F +  +PDA T+       
Sbjct: 244 KSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKL----GQFRI--QPDAQTFRIFVHSF 297

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
            + G +D A E   +M    I+P V T+T LI     + + +EA   F  M +    PNV
Sbjct: 298 NRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNV 357

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           VT+  ++N L K G+++EA  +   M +    PDA  YNTL+DG    G  + A  LF  
Sbjct: 358 VTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKE 417

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M+  G + ++ +Y I+I+   K      A  L+ ++  +G  P V TYNT
Sbjct: 418 MKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNT 467



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 3    IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
            +F+ M R    PP + ++N L   LAK    +    L + +  +G  PDL TYNILI+  
Sbjct: 865  LFEEMQRRQ-CPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGV 923

Query: 63   CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
             KMG V        R+      PD +TFTSLI+ L    +++EA  LF  +   G  P V
Sbjct: 924  GKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSV 983

Query: 123  FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
             TY  LI+ L R G    A  +F EM          C PD IT
Sbjct: 984  VTYNVLIDILGRAGKVHEAAMIFHEMKVKG------CMPDGIT 1020



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 212 NDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
            D + AKC F     Q G    V T+ +++  L    + D   ++L  M + G R    +
Sbjct: 160 KDLHLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHL 219

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
             +L+  F  T  V+ A E+F  M+S GC      Y  ++    K      A+ ++ ++ 
Sbjct: 220 LTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLG 279

Query: 331 SKGIRPTVVTY 341
              I+P   T+
Sbjct: 280 QFRIQPDAQTF 290


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 175/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 78  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 137

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 138 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYS 197

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 198 VLINGLCKESKMDDANELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 251

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A  L  EM  +G++P+ +T+  ++N  CK 
Sbjct: 252 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKE 311

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 312 GDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTY 371

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 372 TMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYN 407



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 164/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + + G +  GF 
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFX 179

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 180 LKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A  L  +M  + 
Sbjct: 240 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 293

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ + ++ + V +  +++  C+ G+  +A 
Sbjct: 294 LKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAE 353

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PDA  Y  +++ FC  G V    +L   M+ +G +  V +Y +L+NG
Sbjct: 354 KMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 99/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 134 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDV 193

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 194 YTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 253

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 254 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 303



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTITD 171
           +Y T+I+ LC     + A +L + + +  G+      F  +       + D   +S +  
Sbjct: 2   SYCTMIHFLCTHQMLLEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIA 61

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   ++        T   ++        +      + E+++ G   
Sbjct: 62  AYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPA 121

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++    L 
Sbjct: 122 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLK 181

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 182 SXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 233


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 177/368 (48%), Gaps = 36/368 (9%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           + LR+  S   V +FNI+   L K             + + G+ P++ TYN +++ +C  
Sbjct: 213 FRLRIKSS---VYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           GRV     +L  + R    PD+ T+ SLI G+C + R+ EA+ +F ++   G +P    Y
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGN-------------------------------GE 154
            TLI+G C  G+  +A    +EM                                    E
Sbjct: 330 NTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQE 389

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
            G+   PDAITY+ + +G C+     KA  L  +M    I P   TYTSL+      N  
Sbjct: 390 KGI--SPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRM 447

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            EA  LF ++  +GV P+V+ FN +++  C N  +  A  LL+ M ++ V PD   +NT+
Sbjct: 448 KEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTI 507

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           M G C  G+V  A+ELF  M+  G   D  S+  LI+GY +  +I+ A  + +EML  G 
Sbjct: 508 MQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGF 567

Query: 335 RPTVVTYN 342
            PTV+TYN
Sbjct: 568 NPTVLTYN 575



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 170/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + N L     K    +    L+  +  + +   +YT+NI+IN  CK G++      
Sbjct: 184 PTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDF 243

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +G +  S   P+ VT+ +++ G C+  R+  A A+ T ++    +PD FTY +LI+G+C+
Sbjct: 244 VGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCK 303

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +FEEM           +P A+ Y+T+ DG C +G +D A     +M  + I
Sbjct: 304 QGRLEEASKIFEEMVQKG------LRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGI 357

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P + TY SLI         +EA+C+  E+ ++G+ P+ +T+N+++N  C+     +A  
Sbjct: 358 SPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFL 417

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+  G++P    Y +L+       R+  A +LF  + S G + DV  +  LI+G+C
Sbjct: 418 LHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHC 477

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            N  ++GA  L  +M    + P  VT+NT
Sbjct: 478 SNSNVKGAFELLKDMDRMKVPPDEVTFNT 506



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 162/330 (49%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   + K    +    +F+ +   GL P    YN LI+ FC  G +      
Sbjct: 289 PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAY 348

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+   +P   T+ SLI  L  E R  EA  +  +++  G  PD  TY  LING CR
Sbjct: 349 KDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             +   A  L +EM A+G        KP   TY+++   L K+  + +A +LF K+  E 
Sbjct: 409 CANAKKAFLLHDEMLASG-------IKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEG 461

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PDV+ + +LI G C  ++   A  L  +M    V P+ VTFN IM   C+ GK++EA 
Sbjct: 462 VLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAR 521

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + M + G++PD   +NTL+ G+   G +  A  +   M   G    V +Y  L+ G 
Sbjct: 522 ELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CKN+E + A  L  EM+SKG+ P   TY T
Sbjct: 582 CKNQEGDLAEELLKEMVSKGMTPDDTTYFT 611



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 148/275 (53%), Gaps = 7/275 (2%)

Query: 5   DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           D ML+   SP  + ++N L   L   +  D    + K +   G+ PD  TYNILIN +C+
Sbjct: 350 DEMLKKGISPT-MSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
                  F++   +L S   P   T+TSL+  L  ++R+ EA  LF K+ + G  PDV  
Sbjct: 409 CANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIM 468

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           +  LI+G C   +   A  L ++M        +   PD +T++TI  G C+EG V++A+E
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDR------MKVPPDEVTFNTIMQGHCREGKVEEARE 522

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           LF +MK   I PD +++ +LI G+    D  +A  +  EM+D G  P V+T+N ++  LC
Sbjct: 523 LFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLC 582

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           KN + D A  LL+ M+  G+ PD + Y TL++G  
Sbjct: 583 KNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIA 617



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 142/295 (48%), Gaps = 6/295 (2%)

Query: 49  FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108
           F     ++ LI   C M R    F     +      P   T  SL+      +R   A  
Sbjct: 148 FKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWV 207

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           L+ ++     K  V+T+  +IN LC+ G    A +    M       GV  KP+ +TY+T
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETS----GV--KPNIVTYNT 261

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           I  G C  G V+ A  +   MK + I PD  TY SLI G C      EA  +F EM+ +G
Sbjct: 262 IVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKG 321

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           ++P+ V +N +++  C  G +D AS   + M++ G+ P  S YN+L+    +  R + A+
Sbjct: 322 LRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +   ++  G   D  +Y ILINGYC+    + A  L+ EML+ GI+PT  TY +
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTS 436



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 7/218 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D ML     P    ++  L   L+K         LFK++ S G+ PD+  +N LI+
Sbjct: 416 FLLHDEMLASGIKPTKK-TYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALID 474

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C    V   F +L  + R    PD VTF ++++G C E ++ EA  LF +++  G KP
Sbjct: 475 GHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKP 534

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  ++ TLI+G  R G    A  +  EM +          P  +TY+ +  GLCK    D
Sbjct: 535 DHISFNTLISGYSRRGDIKDAFRVRNEMLDTG------FNPTVLTYNALVQGLCKNQEGD 588

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
            A+EL  +M  + + PD  TY +LI G    N  +E K
Sbjct: 589 LAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENK 626


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 178/343 (51%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + ++  M RM      V +FNI+   L K             + ++G+ P++ TYN +I+
Sbjct: 176 WVLYAEMFRMRIKSS-VVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIH 234

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +C  GRV    ++   +      PD+ T+ S I G+C E ++ EA+ +  K++  G +P
Sbjct: 235 GYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRP 294

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
              TY TLI+G C  G+  +A +  ++M            P   TY+ +   L  +  +D
Sbjct: 295 TAVTYNTLIDGYCNKGNLEMAFDYRDKMVREG------LMPTVSTYNMLIHALFLDCKMD 348

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  +  +M ++ + PD VTY  LI G+C   +  +A  L  EM+ +G+QP  VT+  ++
Sbjct: 349 EADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLI 408

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             L K G+M +A  L E +++ G+ PD  ++N L+DG C  G ++RA  +   M+    +
Sbjct: 409 YVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVV 468

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D  ++  L+ G C+  ++E A  L  EM S+GI+P  ++YNT
Sbjct: 469 PDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNT 511



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 149/277 (53%), Gaps = 8/277 (2%)

Query: 4   FDYMLRMHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           FDY  +M      P V ++N+L   L  +   D    + K ++  GL PD  TYNILIN 
Sbjct: 316 FDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILING 375

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +C+ G V   F +   ++     P  VT+TSLI  L    R+ +A  LF K+   G  PD
Sbjct: 376 YCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPD 435

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           +  +  LI+G C  G+   A  + +EM     +  VV  PD +T++T+  G C+EG V+ 
Sbjct: 436 LIMFNALIDGHCANGNMDRAFAMLKEM----DQMKVV--PDEVTFNTLMQGRCREGKVEA 489

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+EL  +MK   I PD ++Y +LI G+    D  +A  +  EM+  G  P ++T+N ++ 
Sbjct: 490 ARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQ 549

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            LCKN + D A +LL+ MI  G+ P+ + Y +L++G 
Sbjct: 550 GLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGI 586



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 163/324 (50%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +++L     + K  D     F  +   G+ P ++  N +++ F K  R    +V+   + 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R       VTF  +I  LC E ++ +A      + A G KP+V TY T+I+G C  G   
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  +F+ M           KPD+ TY +   G+CKEG +++A  +  KMK+  + P  V
Sbjct: 244 GARMIFDLMKCRG------VKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAV 297

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY +LI G+C   +   A     +M+ +G+ P V T+N++++ L  + KMDEA  +++ M
Sbjct: 298 TYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEM 357

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + G+ PD+  YN L++G+C  G V +A  L   M S G      +Y  LI    K   +
Sbjct: 358 SEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRM 417

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           + A  L+ +++ KGI P ++ +N 
Sbjct: 418 KQADDLFEKIVRKGIFPDLIMFNA 441



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 150/339 (44%), Gaps = 30/339 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M +     P   ++      + K    +    + +++  IGL P   TYN LI+ +
Sbjct: 248 IFDLM-KCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGY 306

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +   F    +++R    P   T+  LI  L  + ++ EA  +  ++   G  PD 
Sbjct: 307 CNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDS 366

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM-------------------------ANGNGEFGV 157
            TY  LING CR G+   A  L +EM                            +  F  
Sbjct: 367 VTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEK 426

Query: 158 VCK----PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           + +    PD I ++ + DG C  G +D+A  +  +M    + PD VT+ +L++G C    
Sbjct: 427 IVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGK 486

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
              A+ L  EM  +G++P+ +++N +++   K G M +A R+ + M+ IG  P    YN 
Sbjct: 487 VEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNA 546

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           L+ G C     + A++L   M S G   +  +Y  LI G
Sbjct: 547 LIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEG 585



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 107/200 (53%), Gaps = 3/200 (1%)

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           +F E+    G  G+      + Y  +    C+    D A E F  MK + + P V     
Sbjct: 105 VFNELGVARGVLGI---KTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACND 161

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           ++  F  +N   +A  L+ EM    ++ +VVTFN+++N LCK GK+ +A   + LM  +G
Sbjct: 162 MLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALG 221

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           ++P+   YNT++ G+C  GRV  A+ +F  M+  G   D ++YG  I+G CK  ++E A 
Sbjct: 222 IKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEAS 281

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            +  +M   G+RPT VTYNT
Sbjct: 282 GMLEKMKEIGLRPTAVTYNT 301


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 177/378 (46%), Gaps = 49/378 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L   L   +       LF+ +   G  P++ +Y+ L++  CK GR+     +
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRL 201

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD V +TS + GLC  +R+ EA     K+   G K D   ++T+I  LC+
Sbjct: 202 WEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCK 261

Query: 135 TGHTIVALN-----------------LFEEMANGNGE---------FGVVCK----PDAI 164
            GH   A N                  FEEM + N              VCK    PD +
Sbjct: 262 KGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGV 321

Query: 165 -------------------TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
                              TY+ + D LCK   +D+A+EL  +M +  ++PDVVTY++L+
Sbjct: 322 LLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALV 381

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            G C     + A  L  EM  +GV P+  T   I+N L K GK+D A   LE M   G  
Sbjct: 382 DGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGST 441

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD   YNTL+DG C  GR++ A      M +  C  DVFSY I+I   C++ +  GA ++
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAI 501

Query: 326 YSEMLSKGIRPTVVTYNT 343
           + EM+ +G+ P  V Y++
Sbjct: 502 FQEMVKRGVLPDTVLYHS 519



 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 186/362 (51%), Gaps = 27/362 (7%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD++ R       V ++N     LAK          F+++   G  PD +TY+I++   
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGL 83

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA-FGCKPD 121
           CK G +     +LG++  S    + +T++ +I G C  SR+ +A  +F  + A  GC PD
Sbjct: 84  CKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPD 143

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V T+ +L+ GLC       A  LFE MA         C+P+ I+YST+ DGLCK G +D+
Sbjct: 144 VVTFNSLLKGLCSGERMSEAFVLFEYMAKAG------CEPNVISYSTLLDGLCKAGRLDE 197

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF----- 236
           A  L+ +M +++  PD+V YTS + G C AN   EA     +M+ +G + + V F     
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIG 257

Query: 237 ------------NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
                       N ++  LC++G +DEA +  E MI     P A ++NTL+   C + R+
Sbjct: 258 ILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRL 317

Query: 285 NRAKELFVSMESNG---CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                LF  M+S     C  ++ +Y I+++  CK K+++ A  L +EM + G+ P VVTY
Sbjct: 318 PDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTY 377

Query: 342 NT 343
           + 
Sbjct: 378 SA 379



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 169/348 (48%), Gaps = 27/348 (7%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V +++++     K    D  L +FK +++ G   PD+ T+N L+   C   R+S  FV+ 
Sbjct: 108 VITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLF 167

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             + ++   P+ +++++L+ GLC   R+ EA  L+ ++    C PD+  YT+ + GLC+ 
Sbjct: 168 EYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKA 227

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI-----------------TDGLCKEGF 178
                A +   +M           K DA+ +ST+                  + LC+ G 
Sbjct: 228 NRVAEACDCCRKMVTKGS------KADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGM 281

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG---VQPNVVT 235
           +D+A + F +M   N  P    + +LI   C +    +   LF  M         PN+ T
Sbjct: 282 LDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLET 341

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N++++ LCK  ++DEA  L+  M   G+ PD   Y+ L+DG C  G+++RA +L   M 
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   D F+   ++N   K  +++ ALS    M ++G  P +VTYNT
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNT 449



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 168/330 (50%), Gaps = 17/330 (5%)

Query: 4   FDYML-RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF---PDLYTYNILI 59
           F+ M+ R HP  P    FN L   + K+K     + LF+R+ S+  F   P+L TYNI++
Sbjct: 289 FEEMISRNHP--PSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMV 346

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +  CK  ++     ++  +     +PD VT+++L+ GLC   ++  A  L  ++   G  
Sbjct: 347 DNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVF 406

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           PD FT  +++N L + G    AL+  E M A G+        PD +TY+T+ DGLCK G 
Sbjct: 407 PDSFTDASILNALSKAGKVDYALSHLETMKARGS-------TPDLVTYNTLLDGLCKAGR 459

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D+A     KM      PDV +YT +I   C +     A  +F EM+ +GV P+ V ++ 
Sbjct: 460 IDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHS 519

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ L +NG  D A   LEL+     +PD  ++  ++DG C  G+   A E+   M   G
Sbjct: 520 LLDGLARNGLEDLA---LELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAG 576

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSE 328
              D F+Y  ++ G  K  +++ A  L  +
Sbjct: 577 FPADAFTYINVVRGLRKLGKVDKARQLVDD 606



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 161/324 (49%), Gaps = 12/324 (3%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI-- 78
           N +   L ++   D     F+ + S    P    +N LI+  CK  R+  G ++  R+  
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKS 329

Query: 79  LRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           ++  +  P+  T+  ++  LC   ++ EA  L  ++  +G  PDV TY+ L++GLC+ G 
Sbjct: 330 MKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGK 389

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A +L EEM+   G F     PD+ T ++I + L K G VD A      MK     PD
Sbjct: 390 LDRACDLLEEMSK-EGVF-----PDSFTDASILNALSKAGKVDYALSHLETMKARGSTPD 443

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           +VTY +L+ G C A   +EA     +M+     P+V ++ +I+  LC++G+   A  + +
Sbjct: 444 LVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ 503

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M++ GV PD  +Y++L+DG    G  + A EL   ++++ C  D   + ++++G CK  
Sbjct: 504 EMVKRGVLPDTVLYHSLLDGLARNGLEDLALEL---LKTSLCKPDFVMHKMVVDGLCKAG 560

Query: 318 EIEGALSLYSEMLSKGIRPTVVTY 341
           + E A  +   M   G      TY
Sbjct: 561 KAEDACEVVERMADAGFPADAFTY 584


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 171/358 (47%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   + ++ + +     F  + ++GL PDL TYN LIN +CK G +     +
Sbjct: 335 PTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWL 394

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G + R+   P  +T+  L+ G C    + EA     ++   GC+PDV TYT L+NG  +
Sbjct: 395 FGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRK 454

Query: 135 TGHTIVALNLFEEM----------------------ANGNGEFGVV-------CKPDAIT 165
             +  +    F+EM                       + +  F +           D +T
Sbjct: 455 VRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVT 514

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+   DGLCK G +  A  L++KM  + + PD +TYT LI   C      EA+ +F  M+
Sbjct: 515 YNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGML 574

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G+ P+ VT+ V ++  C+ G +  A    + M++ GVRP+   YN L+   C  GR N
Sbjct: 575 VSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTN 634

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A + F  M   G   + ++Y +LI+G CK    E A+ LYSEM   GI P   T+N 
Sbjct: 635 LAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNA 692



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 169/335 (50%), Gaps = 11/335 (3%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H  PP +   N++   L     +D + S++  +  +G+ P + TYN L++ F + GRV  
Sbjct: 190 HGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQ 249

Query: 71  GFVVLGRILR---SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
              +L  +      C  P  VT+  +I GL  +  + +AA L  ++R    K   FT+  
Sbjct: 250 AAKLLREMEARPGGCL-PSDVTYNVVINGLARKGELEKAAQLVDRMR-MSKKASAFTFNP 307

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI G    G    A  L  EM N     G+V  P  +TY+TI  G+ + G V+ A+  F+
Sbjct: 308 LITGYFARGSVEKAGALQLEMENE----GIV--PTVVTYNTIIHGMFRSGNVEAARMKFV 361

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M+   + PD++TY SLI G+C A +  EA  LF ++   G+ P+V+T+N++++  C+ G
Sbjct: 362 EMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLG 421

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            ++EA R  + M++ G +PD S Y  LM+G      +   +E F  M S G   D F+Y 
Sbjct: 422 DLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYN 481

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             I+          A  L   M+S+GI    VTYN
Sbjct: 482 TRISAELILGSTSEAFQLTEVMISRGISSDTVTYN 516



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 152/309 (49%), Gaps = 9/309 (2%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L+ F+ +   G+ P +   N+++       R      V   +L+    P  VT+ +L+  
Sbjct: 181 LAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDS 240

Query: 97  LCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
              E R+ +AA L  ++  R  GC P   TY  +INGL R G    A  L + M      
Sbjct: 241 FFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSK-- 298

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
                K  A T++ +  G    G V+KA  L L+M++E I P VVTY ++I G   + + 
Sbjct: 299 -----KASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNV 353

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             A+  F+EM   G+ P+++T+N ++N  CK G + EA  L   + + G+ P    YN L
Sbjct: 354 EAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNIL 413

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DG+C  G +  A+     M   GC  DV +Y IL+NG  K + +      + EMLSKG+
Sbjct: 414 LDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGL 473

Query: 335 RPTVVTYNT 343
           +P    YNT
Sbjct: 474 QPDCFAYNT 482



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 146/334 (43%), Gaps = 41/334 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     K  +    L LF  L   GL P + TYNIL++ +C++G +      
Sbjct: 370 PDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRF 429

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD  T+T L+ G      +      F ++ + G +PD F Y T I+    
Sbjct: 430 KQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELI 489

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A  L E M +           D +TY+   DGLCK G +  A  L++KM  + +
Sbjct: 490 LGSTSEAFQLTEVMISRG------ISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGL 543

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLF--------------------------------- 221
            PD +TYT LI   C      EA+ +F                                 
Sbjct: 544 QPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYG 603

Query: 222 --IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
              +M+++GV+PN VT+NV+++ LC+ G+ + A +    M++ G+ P+   Y  L+DG C
Sbjct: 604 WFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNC 663

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             G    A  L+  M  +G   D  ++  L  G+
Sbjct: 664 KEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGF 697



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 2/149 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD ML +   PP   ++ +      +  +  +    F+++   G+ P+  TYN+LI+  
Sbjct: 569 IFDGML-VSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHAL 627

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+MGR +  +     +L    +P+  T+T LI G C E    EA  L++++   G  PD 
Sbjct: 628 CRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDH 687

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANG 151
            T+  L  G    G +  A+   E +  G
Sbjct: 688 CTHNALFKGF-DEGQSKHAIQYMENVVLG 715


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 164/301 (54%), Gaps = 9/301 (2%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           L   G   D  +YN+LIN +CK G +     VL     +   P+A T+ +++  LC   +
Sbjct: 130 LEESGAVIDANSYNVLINAYCKSGEIEEALRVLDH---TSVAPNAATYDAVLCSLCDRGK 186

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + +A  +  +     C PDV T T LI+  C+      A+ LF EM  G G     CKPD
Sbjct: 187 LKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEM-RGKG-----CKPD 240

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TY+ +  G CKEG +D+A     K+       DV+++  ++R  C    W +A  L  
Sbjct: 241 VVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLA 300

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
            M+ +G  P+VVTFN+++N LC+ G + +A  +LE+M + G  P++  +N L+ GFC   
Sbjct: 301 TMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRK 360

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++RA E    M S GC  D+ +Y IL+   CK+ +++ A+ + S++ SKG  P++++YN
Sbjct: 361 GIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYN 420

Query: 343 T 343
           T
Sbjct: 421 T 421



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 156/322 (48%), Gaps = 9/322 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+N+L     K+   +  L +   L+   + P+  TY+ ++   C  G++     VL R 
Sbjct: 141 SYNVLINAYCKSGEIEEALRV---LDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQ 197

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L+S   PD VT T LI   C ES + +A  LF ++R  GCKPDV TY  LI G C+ G  
Sbjct: 198 LQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRL 257

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+   +++ +    +G  C+ D I+++ I   LC  G    A +L   M  +   P V
Sbjct: 258 DEAIIFLKKLPS----YG--CQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSV 311

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VT+  LI   C      +A  +   M   G  PN  +FN ++   C    +D A   LE+
Sbjct: 312 VTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEI 371

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+  G  PD   YN L+   C  G+V+ A  +   + S GC   + SY  +I+G  K  +
Sbjct: 372 MVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGK 431

Query: 319 IEGALSLYSEMLSKGIRPTVVT 340
            E A+ L  EM  KG++P ++T
Sbjct: 432 AELAVELLEEMCYKGLKPDLIT 453



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 160/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +  +L     K       + LF  +   G  PD+ TYN+LI  FCK GR+    + 
Sbjct: 204 PDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIF 263

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++       D ++   +++ LC+  R M+A  L   +   GC P V T+  LIN LC+
Sbjct: 264 LKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQ 323

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    ALN+ E M   +G       P++ +++ +  G C    +D+A E    M     
Sbjct: 324 KGLLGKALNVLEMMPK-HGH-----TPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGC 377

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY  L+   C     ++A  +  ++  +G  P+++++N +++ L K GK + A  
Sbjct: 378 YPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVE 437

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE M   G++PD     +++ G    G+V+ A + F  ++  G   + F Y  ++ G C
Sbjct: 438 LLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLC 497

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K ++   A+    +M++ G +PT  +Y T
Sbjct: 498 KAQQTSLAIDFLVDMVANGCKPTEASYTT 526



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 139/299 (46%), Gaps = 6/299 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF   L  +     V S N++   L     +   + L   +   G FP + T+NILIN  
Sbjct: 262 IFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFL 321

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G +     VL  + +   TP++ +F  LI+G C    I  A      + + GC PD+
Sbjct: 322 CQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDI 381

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  L+  LC+ G    A+ +  ++++        C P  I+Y+T+ DGL K G  + A
Sbjct: 382 VTYNILLTALCKDGKVDDAVVILSQLSSKG------CSPSLISYNTVIDGLLKVGKAELA 435

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL  +M  + + PD++T TS++ G       +EA   F  +   G++PN   +N IM  
Sbjct: 436 VELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMG 495

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           LCK  +   A   L  M+  G +P  + Y TL+ G    G    A +L   + S G ++
Sbjct: 496 LCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLVK 554



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 3/170 (1%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           L + G +++       M ++   PDVV  T+LIR FC       A  +   + + G   +
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVID 138

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
             ++NV++N  CK+G+++EA R+L+      V P+A+ Y+ ++   C  G++ +A ++  
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVLD---HTSVAPNAATYDAVLCSLCDRGKLKQAMQVLD 195

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               + C  DV +  +LI+  CK   +  A+ L++EM  KG +P VVTYN
Sbjct: 196 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYN 245


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 158/295 (53%), Gaps = 11/295 (3%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD+  YN ++  +C  G++     ++  +      PD+ T+ +LI+GLC   R   A  +
Sbjct: 122 PDVMAYNAMVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNALVV 178

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYST 168
              +   GC PDV TYT L+   C+      A+ L +EM A G       C PD ITY+ 
Sbjct: 179 LDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKG-------CAPDIITYNV 231

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           + +G+C+EG VD A E    +      P+ V+Y  +++G C A  W +A+ L  EM  +G
Sbjct: 232 VVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKG 291

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
             PNVVTFN++++ LC+ G ++ A  +L+ + + G  P++  YN ++  FC   +++RA 
Sbjct: 292 YPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAM 351

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                M S GC  D+ SY  L+   C+  E++ A+ L  ++  KG  P +++YNT
Sbjct: 352 AFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNT 406



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 178/363 (49%), Gaps = 30/363 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             + D MLR     P V ++ IL     K   Y   + L   + + G  PD+ TYN+++N
Sbjct: 176 LVVLDDMLR-RGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVN 234

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ GRV      L  +      P+ V++  ++KGLC   R  +A  L  ++   G  P
Sbjct: 235 GICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPP 294

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMA---------NGNGEFGVVCK----------- 160
           +V T+  LI+ LCR G    A+ + +++          + N      CK           
Sbjct: 295 NVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFV 354

Query: 161 ---------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    PD ++Y+T+   LC+ G VD A EL  ++KD+   P +++Y ++I G   A
Sbjct: 355 ELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKA 414

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
               EA  L  EM+ +G+QP+++T++ I + LC+  +++EA R    +  +G+RP+  +Y
Sbjct: 415 GKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLY 474

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N ++ G C     + A +LF+ M SNGCM +  +Y ILI G      ++ A  L  E+ S
Sbjct: 475 NAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCS 534

Query: 332 KGI 334
           +G+
Sbjct: 535 RGV 537



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 151/332 (45%), Gaps = 6/332 (1%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P  P   ++N L   L         L +   +   G  PD+ TY IL+   CK       
Sbjct: 151 PMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQA 210

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +L  +      PD +T+  ++ G+C E R+ +A      L + GC+P+  +Y  ++ G
Sbjct: 211 MKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKG 270

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LC       A  L  EM+           P+ +T++ +   LC+ G V+ A E+  ++  
Sbjct: 271 LCTAERWEDAEKLMAEMSQKG------YPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPK 324

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               P+ ++Y  ++  FC     + A      M+ +G  P++V++N ++  LC+ G++D 
Sbjct: 325 YGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDA 384

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  LL  +   G  P    YNT++DG    G+   A EL   M + G   D+ +Y  + +
Sbjct: 385 AVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISS 444

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G C+   IE A+  + ++   GIRP  V YN 
Sbjct: 445 GLCREDRIEEAIRAFCKVQDMGIRPNTVLYNA 476



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 52/124 (41%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ +   L +    +  +  F ++  +G+ P+   YN ++   CK         +
Sbjct: 434 PDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDL 493

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++ +   P+  T+T LI+GL  E  + EA  L  +L + G           I  L  
Sbjct: 494 FIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVVSKGLINKAAIRLLDG 553

Query: 135 TGHT 138
           T HT
Sbjct: 554 TTHT 557


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 180/341 (52%), Gaps = 6/341 (1%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C F   L     PP    FN+L   L +     +  ++F  + S G+   + ++N +I+ 
Sbjct: 101 CAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISG 160

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C+ G +     +  R+  +  TPD  T+ +LI+GLC   RI +A  +F K+   G KP+
Sbjct: 161 MCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPN 220

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
              +T LI+  C+ G     L L  EM     E GV  +PDA+TY+ I +GLC+   +  
Sbjct: 221 AVVFTILIDAHCKKGDAETMLELHREMR----ERGV--RPDAVTYNAIVNGLCRARDLKS 274

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  + ++M+   + PD VTYT+LI G+C   + + A  +   M+ +GV  + VT+  +++
Sbjct: 275 ASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALIS 334

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            L K G+  +A R+L  M++ G+ PD + Y  ++D FC  G V     L   M++ G   
Sbjct: 335 GLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKP 394

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            V +Y +++NG+CK  +++ A  L + M++ G+ P  +TYN
Sbjct: 395 GVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYN 435



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 9/327 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V SFN +   + +    D   +L +R++  G+ PD+YTY  LI   C++GR+     V  
Sbjct: 151 VVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFE 210

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++      P+AV FT LI   C +        L  ++R  G +PD  TY  ++NGLCR  
Sbjct: 211 KMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRAR 270

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +  EM +         +PD +TY+T+ DG CKE  +D A E+   M  E +  
Sbjct: 271 DLKSASGIVVEMRSAG------LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGL 324

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTYT+LI G   A    +A+ +  EMM+ G++P+  T+ ++++  C+ G +    RLL
Sbjct: 325 DEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLL 384

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M   G +P    YN +M+GFC  G++  A  L  +M + G   D  +Y IL++G+CK+
Sbjct: 385 KEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKH 444

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++     L S   +KG  P +  Y +
Sbjct: 445 GKVTDIEELKS---AKGTVPDLGVYTS 468



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 6/239 (2%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           EA A + +L   G  P+   +  L+  L R G    A N+F+EM +     GV  +   +
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQS----RGV--RRTVV 152

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           +++T+  G+C+ G +D A+ L  +M +  + PDV TY +LI+G C      +A+ +F +M
Sbjct: 153 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 212

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
             +G++PN V F ++++  CK G  +    L   M + GVRPDA  YN +++G C    +
Sbjct: 213 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 272

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A  + V M S G   D  +Y  LI+GYCK +E++ A+ +   M+++G+    VTY  
Sbjct: 273 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTA 331



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 3/124 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ ++     +     T L L K + + G  P + TYN+++N FCK+G++    ++
Sbjct: 359 PDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADML 418

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++    +PD +T+  L+ G C   ++ +   L +   A G  PD+  YT+++  + +
Sbjct: 419 LNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKS---AKGTVPDLGVYTSIVGEIVK 475

Query: 135 TGHT 138
              T
Sbjct: 476 KKTT 479


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 176/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P+ +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A  L  EM  +G++P+ +T+  +++  CK 
Sbjct: 271 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 331 GDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYN 426



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 167/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A  L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PDA  Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 99/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 153 CKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 212

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 213 YTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 272

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 273 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 322



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 113/237 (47%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +
Sbjct: 16  RHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETRGTQRSDIYVF 75

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++      + T   ++        +      + E+++
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEILE 135

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++ 
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 252


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 179/334 (53%), Gaps = 7/334 (2%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           M  SP       IL G L + + +D+V   ++ + S GL PD++ Y++L  C  K G  S
Sbjct: 192 MRCSPDSKACLAILNG-LVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPS 250

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +L  +      P+   +T  I+ LC E+++ EA  +F  ++  G  P+++TY+ +I
Sbjct: 251 KKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMI 310

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           +G C+TG+   A  L++E+            P+ + + T+ DG CK   +  A+ LF+ M
Sbjct: 311 DGYCKTGNLRQAYGLYKEILVAE------LLPNVVVFGTLVDGFCKARELVAARSLFVHM 364

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               ++P++  Y  LI G C + +  EA  L  EM    + P+V T+ +++N LC   ++
Sbjct: 365 VKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERL 424

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            EA+RL + M    + P +  YN+L+ GFC    + +A +L   M S+G   ++ ++  L
Sbjct: 425 AEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTL 484

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+GYCK + I+ A+ LY EM  KGI P VVTY T
Sbjct: 485 IDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTT 518



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 177/371 (47%), Gaps = 51/371 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  + I    L +    +    +F+ +   G+ P+LYTY+ +I+ +CK G +   + +
Sbjct: 266 PNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGL 325

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              IL +   P+ V F +L+ G C    ++ A +LF  +  FG  P+++ Y  LI+G C+
Sbjct: 326 YKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCK 385

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+ + A+ L  EM + N        PD  TY+ + +GLC E  + +A  LF +MK+E I
Sbjct: 386 SGNMLEAMGLLSEMESLN------LSPDVFTYTILINGLCTEERLAEANRLFQRMKNERI 439

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC---------- 244
            P  VTY SLI GFC   +  +A  L  EM   GV+PN++TF+ +++  C          
Sbjct: 440 FPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMG 499

Query: 245 -------------------------KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
                                    K   M EA RL   M++ G+ P+   +  L+DGF 
Sbjct: 500 LYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFW 559

Query: 280 LTGRVNRAKELFV---------SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
             GR++ A + ++         S+    C + V  +  LI G C+N  I  A   +S+M 
Sbjct: 560 KEGRLSDAIDFYLENNQAATGKSIVQRSCWKYV-GFTCLIEGLCQNGYILRASRFFSDMK 618

Query: 331 SKGIRPTVVTY 341
           S G+ P + +Y
Sbjct: 619 SGGVTPDIWSY 629



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 148/351 (42%), Gaps = 49/351 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  F  L     K +      SLF  +   G+ P+LY YN LI+  CK G +     +
Sbjct: 336 PNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGL 395

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +     +PD  T+T LI GLC E R+ EA  LF +++     P   TY +LI+G C+
Sbjct: 396 LSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCK 455

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL+L  EM +   E      P+ IT+ST+ DG CK   +  A  L+ +M  + I
Sbjct: 456 EYNIEKALDLCSEMTSSGVE------PNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGI 509

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN---------------------- 232
            PDVVTYT+LI       +  EA  L+ +M++ G+ PN                      
Sbjct: 510 VPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAID 569

Query: 233 ---------------------VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                                 V F  ++  LC+NG +  ASR    M   GV PD   Y
Sbjct: 570 FYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSY 629

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
            +++       R+     L   M   G + ++    +L   Y +N  +  A
Sbjct: 630 VSMLKAHLREKRITDTMMLHCDMIKTGILPNLMVNQLLAMFYQENGYLRSA 680



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 124/261 (47%), Gaps = 33/261 (12%)

Query: 114 RAFGCKPDVFTYTTLINGLCRTG---------HTIVALNLF------------------- 145
           R   C PD      ++NGL R             +++  L                    
Sbjct: 190 REMRCSPDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFP 249

Query: 146 ---EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
              E++ +     GV  KP+   Y+     LC+E  +++A+++F  MK   + P++ TY+
Sbjct: 250 SKKEKLLDEMTSLGV--KPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYS 307

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           ++I G+C   +  +A  L+ E++   + PNVV F  +++  CK  ++  A  L   M++ 
Sbjct: 308 AMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKF 367

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           GV P+  VYN L+ G C +G +  A  L   MES     DVF+Y ILING C  + +  A
Sbjct: 368 GVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEA 427

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
             L+  M ++ I P+ VTYN+
Sbjct: 428 NRLFQRMKNERIFPSSVTYNS 448


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 181/327 (55%), Gaps = 9/327 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVVLGR 77
           ++N L   L        V++LF+R     L+ PD++++N++I   C++G+V     ++ R
Sbjct: 215 AYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVER 274

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTG 136
           +     +PD VT   ++ GLC  + +     +  +L+  G C P+V T+T++I+G C+ G
Sbjct: 275 MNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAG 334

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ ++ +M       G++  P+ +TY+ + +G  K G +  A E++ +M      P
Sbjct: 335 KLEDAMAVYNDMVAS----GIM--PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPP 388

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DVVT++SLI G+C     ++A  ++ +M    +QPNV TF++I++ LCK  + DEA RLL
Sbjct: 389 DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLL 448

Query: 257 -ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            EL ++  + P A +YN ++D  C  G+V+ A  +   ME  GC  D ++Y ILI GYC 
Sbjct: 449 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCM 508

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
              I  A+  + EM+  G  P  +T N
Sbjct: 509 KSRISEAIMFFHEMVEAGCSPDSITVN 535



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 161/311 (51%), Gaps = 8/311 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+  ++     P V SFN++   + +       L L +R+N  G  PD  T+NI+++  
Sbjct: 235 LFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGL 294

Query: 63  CKMGRVSPGFVVLGRILRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           C+   VS G  VL R+ R     P+ VTFTS+I G C   ++ +A A++  + A G  P+
Sbjct: 295 CRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPN 354

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TY  LING  + G    A+ ++++M        + C PD +T+S++ DG C+ G +D 
Sbjct: 355 TVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRCGQLDD 408

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIM 240
           A  ++  M    I P+V T++ +I   C  N  +EA  L  E+ +   + P    +N ++
Sbjct: 409 ALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVI 468

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK GK+DEA+ + + M + G RPD   Y  L+ G+C+  R++ A   F  M   GC 
Sbjct: 469 DVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCS 528

Query: 301 RDVFSYGILIN 311
            D  +    I+
Sbjct: 529 PDSITVNCFIS 539



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 182/376 (48%), Gaps = 55/376 (14%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLN--SIGLFPDLYTYNILINCFCKMG 66
           R+ PSP    +   L  C +      + L++F  L+   + + P  ++   +I   C+ G
Sbjct: 103 RIDPSPLAAVAALRLAPCAS------SALAVFTALHCSPLSITPSAHSCQQIIVVLCRSG 156

Query: 67  RVSPGFVVLGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAA-LFTKLRAFGCK----- 119
           R +    +  ++     ++PDA  F S +   C  + +++A+A L +K   FGC+     
Sbjct: 157 RQADALQLFDQMTTHYGYSPDA-RFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYA 215

Query: 120 -------------------------------PDVFTYTTLINGLCRTGHTIVALNLFEEM 148
                                          PDV+++  +I G+CR G    AL L E M
Sbjct: 216 YNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVERM 275

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI-NPDVVTYTSLIRG 207
                EFG  C PD +T++ I DGLC+   V +  E+  +++ + +  P+VVT+TS+I G
Sbjct: 276 ----NEFG--CSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISG 329

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           +C A    +A  ++ +M+  G+ PN VT+NV++N   K G +  A  + + M ++   PD
Sbjct: 330 YCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPD 389

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              +++L+DG+C  G+++ A  ++  M  +    +V+++ I+I+  CK    + A+ L +
Sbjct: 390 VVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLN 449

Query: 328 EM-LSKGIRPTVVTYN 342
           E+ L   I P    YN
Sbjct: 450 ELNLRPDIAPQAFIYN 465



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 130/267 (48%), Gaps = 15/267 (5%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA-FGCKPDVFTYTTLINGLCRTGHTIVA 141
            TP A +   +I  LC   R  +A  LF ++   +G  PD    + L++       +   
Sbjct: 138 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVS-------SCTC 190

Query: 142 LNLFEEMA---NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK-MKDENINPD 197
            NL +  A   +   EFG  C+ +A  Y+ +   L   G V     LF + ++D   +PD
Sbjct: 191 ANLLDASATLLSKASEFG--CRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPD 248

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V ++  +I+G C      +A  L   M + G  P+ VT N+I++ LC+  ++     +L 
Sbjct: 249 VWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLR 308

Query: 258 LMIQIGV-RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
            + + GV  P+   + +++ G+C  G++  A  ++  M ++G M +  +Y +LINGY K 
Sbjct: 309 RLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKV 368

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++  A+ +Y +M      P VVT+++
Sbjct: 369 GDLGSAVEVYQQMTRLRCPPDVVTFSS 395


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 180/345 (52%), Gaps = 15/345 (4%)

Query: 3   IFDYM-LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           + D M LR   + PP+C   +   C  +   + + +   + L++ G   D    N++++ 
Sbjct: 130 VLDEMPLRGCAATPPMCHVILEAAC--RGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSA 187

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C+ G V  G  +L ++      PD V++ +++KGLC   R  +   L  ++   GC P+
Sbjct: 188 ICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPN 247

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNG---EFGVVCKPDAITYSTITDGLCKEGF 178
           V T+ TLI  LCR G       LFE++        E G  C PD   Y+TI DG+CK+G 
Sbjct: 248 VATFNTLIAYLCRNG-------LFEQVHEALSQMPEHG--CTPDLRMYATIIDGICKDGH 298

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
            + A ++  +M    + P+VV Y ++++G C A  W EA+ L  EM  +    + VTFN+
Sbjct: 299 HEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNI 358

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++  C+NG +D    LLE M++ G  PD   Y T+++GFC  G V+ A  L  +M + G
Sbjct: 359 LVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACG 418

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C  +  SY I++ G C+ +    A  L S M+ +G  P  VT+NT
Sbjct: 419 CKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNT 463



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 174/340 (51%), Gaps = 9/340 (2%)

Query: 7   MLRMHPS---PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           +LR  PS    P + S+N +   L   K +D V  L   +  +G  P++ T+N LI   C
Sbjct: 200 LLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLC 259

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           + G        L ++     TPD   + ++I G+C +     A  + +++ ++G KP+V 
Sbjct: 260 RNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVV 319

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            Y T++ GLC       A +L  EM      F   C  D +T++ + D  C+ G VD+  
Sbjct: 320 CYNTVLKGLCSAERWEEAEDLLAEM------FQEDCPLDDVTFNILVDFFCQNGLVDRVI 373

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL  +M +    PDV+TYT++I GFC     +EA  L   M   G +PN +++ +++  L
Sbjct: 374 ELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGL 433

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C+  +  +A  L+  MIQ G  P+   +NTL++  C  G V +A EL   M  NGC  D+
Sbjct: 434 CRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDL 493

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            SY  +I+G  K  + E AL L + M++KGI P  + Y++
Sbjct: 494 ISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSS 533



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 161/330 (48%), Gaps = 6/330 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +FN L   L +N  ++ V     ++   G  PDL  Y  +I+  CK G       
Sbjct: 245 PPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVAND 304

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R+      P+ V + +++KGLC+  R  EA  L  ++    C  D  T+  L++  C
Sbjct: 305 ILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFC 364

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G     + L E+M     E G  C PD ITY+T+ +G CKEG VD+A  L   M    
Sbjct: 365 QNGLVDRVIELLEQML----EHG--CIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACG 418

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+ ++YT +++G C A  W +A+ L   M+ QG  PN VTFN ++N +CK G +++A 
Sbjct: 419 CKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAI 478

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL+ M+  G  PD   Y+T++DG    G+   A EL   M + G   +   Y  + +  
Sbjct: 479 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASAL 538

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +    +  + ++  +    +R     YN 
Sbjct: 539 SREGRTDKIIQMFDSIQDATVRSDAALYNA 568



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 175/341 (51%), Gaps = 11/341 (3%)

Query: 5   DYMLRMHPS---PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           D + RM PS    P V  +N +   L   + ++    L   +       D  T+NIL++ 
Sbjct: 304 DILSRM-PSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDF 362

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FC+ G V     +L ++L     PD +T+T++I G C E  + EA  L   + A GCKP+
Sbjct: 363 FCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPN 422

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             +YT ++ GLCR    + A  L   M          C P+ +T++T+ + +CK+G V++
Sbjct: 423 TISYTIVLKGLCRAERWVDAQELISHMIQQG------CLPNPVTFNTLINFMCKKGLVEQ 476

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A EL  +M     +PD+++Y+++I G   A    EA  L   M+++G+ PN + ++ + +
Sbjct: 477 AIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMAS 536

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            L + G+ D+  ++ + +    VR DA++YN ++   C     +RA + F  M SNGCM 
Sbjct: 537 ALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 596

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLS-KGIRPTVVTY 341
           +  +Y ILI G      +  A  L SE+ S + +R  +V +
Sbjct: 597 NESTYTILIRGLASEGLVREAQDLLSELCSRRAVRKHLVRH 637



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 144/303 (47%), Gaps = 11/303 (3%)

Query: 41  KRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100
           + L++ G    +  YN +I  +C+ G+V+    +   +      P+A T+  +++ LCA 
Sbjct: 65  RALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP---VPPNAYTYFPIVRSLCAR 121

Query: 101 SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVC 159
             I +A  +  ++   GC         ++   CR G    A+   + + A G       C
Sbjct: 122 GLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKG-------C 174

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
             D+   + +   +C++G VD+  EL  K+      PD+V+Y ++++G C A  W++ + 
Sbjct: 175 TLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEE 234

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L +EM+  G  PNV TFN ++  LC+NG  ++    L  M + G  PD  +Y T++DG C
Sbjct: 235 LMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGIC 294

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G    A ++   M S G   +V  Y  ++ G C  +  E A  L +EM  +      V
Sbjct: 295 KDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDV 354

Query: 340 TYN 342
           T+N
Sbjct: 355 TFN 357



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 12/218 (5%)

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           + LI  LC  G T  A    +   +  G          + Y+ +  G C+ G V  A+ L
Sbjct: 48  SALIRSLCAAGRTADAARALDTAGDAAG---------VVAYNAMIAGYCRAGQVAAARRL 98

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
              +    + P+  TY  ++R  C      +A  +  EM  +G        +VI+   C+
Sbjct: 99  AAAVP---VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACR 155

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G    A R L+++   G   D+   N ++   C  G V+   EL   + S GC  D+ S
Sbjct: 156 GGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVS 215

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y  ++ G C  K  +    L  EM+  G  P V T+NT
Sbjct: 216 YNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNT 253


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 174/334 (52%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   +K +   G    LY +NIL++ FCK G
Sbjct: 91  LTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +L+ G      + +   L   + A G +PDV+TY+
Sbjct: 151 EIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A +LF EM +     G+V  P+ +T++T+ DG CK G VD A E +
Sbjct: 211 VLINGLCKESKMNEANDLFNEMLDK----GLV--PNGVTFTTLIDGHCKNGKVDSAMETY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +   PD++TY +LI G C   D  +A+ L  EM  +G++P+ +T+  +++  CK 
Sbjct: 265 KQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A  L E M++  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 325 GDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK ++++ A  L  EM  +G  P VVT
Sbjct: 385 TMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 141/291 (48%), Gaps = 6/291 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D+Y ++ LIN + + G V                    T   +++ L            +
Sbjct: 65  DIYVFSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++   G    ++ +  L++  C+ G   +A ++F+ +     ++G+  +P  ++++T+ 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSIT----KWGL--RPSVVSFNTLM 178

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +G  + G +D+  +L   M    + PDV TY+ LI G C  +  NEA  LF EM+D+G+ 
Sbjct: 179 NGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLV 238

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN VTF  +++  CKNGK+D A    + M+     PD   YNTL+ G C  G + +A++L
Sbjct: 239 PNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              M   G   D  +Y  LI+G CK  +++ A  L   M+ + IR   V Y
Sbjct: 299 LDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAY 349



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 97/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CKEG +  A+ +F  +    + P VV++ +L+ G+    D ++   L   M   GVQP+V
Sbjct: 147 CKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDV 206

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KM+EA+ L   M+  G+ P+   + TL+DG C  G+V+ A E +  
Sbjct: 207 YTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQ 266

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 267 MLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTT 316



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 116/234 (49%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + TY T+I+ LC     + A +L + + +  G+      F  +       + D   +S +
Sbjct: 13  LHTYCTMIHFLCTHQMLLEAKSLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYVFSGL 72

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +   + GFV  A E F   ++  +     T   ++        +      + E+++ G 
Sbjct: 73  INAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGY 132

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK G++  A  + + + + G+RP    +NTLM+G+   G +++  +
Sbjct: 133 PASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFK 192

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  ++  A  L++EML KG+ P  VT+ T
Sbjct: 193 LKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTT 246


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 176/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   + K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 80  LTREHKFWVPFDTCRKVLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEG 139

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 140 DIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 199

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM +     G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 200 VLINGLCKESKMDDANELFDEMLDK----GLV--PNGVTFTTLIDGHCKSGRVDLAMEIY 253

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A  L  EM  +G++P+ +T+  +++  CK 
Sbjct: 254 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKE 313

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 314 GDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTY 373

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 374 TMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYN 409



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 181

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 182 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 241

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           ++G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A +L  +M  + 
Sbjct: 242 KSGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 295

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 296 LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAE 355

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+  G++PD   Y  +++ FC  G V    +L   M+ +G +  V +Y +L+NG
Sbjct: 356 KVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 99/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CKEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M   GVQP+V
Sbjct: 136 CKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDV 195

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C +GRV+ A E++  
Sbjct: 196 YTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQ 255

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 256 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 305



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTITD 171
           +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +  
Sbjct: 4   SYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 63

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   ++        T   ++        +      + E+++ G   
Sbjct: 64  AYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKLKYFKLVWGFYEEILECGYPA 123

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+  CK G +  A  +   + + G+RP    +NTLM+G+   G ++    L 
Sbjct: 124 SLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 183

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 184 SAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTT 235


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 176/338 (52%), Gaps = 10/338 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +   L      +    LF+ +  +G+ PD+YTY ILI+ FCK G +     +
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P  VT+T+LI       ++ +A  +F ++   GC+P+  TY  L++GLC+
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 405

Query: 135 TGHTIVALNLFEEMA----NGNGEFGVVCK------PDAITYSTITDGLCKEGFVDKAKE 184
            G+   A  ++ ++     + + +F   C+      P+ +TY  + DGLCK   VD A E
Sbjct: 406 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 465

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L   M      P+ + Y +LI GFC A   + A+ +F++M   G  P+V T+  +++ + 
Sbjct: 466 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 525

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K+G++D A ++L  M++    P+   Y  ++DG C  G   +A +L   ME  GC  +V 
Sbjct: 526 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 585

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +Y  LI+G  K  +I+ +L L+++M  KG  P  VTY 
Sbjct: 586 TYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYR 623



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 159/334 (47%), Gaps = 22/334 (6%)

Query: 26  CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP 85
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D  T+T LI   C    I +A  LF ++R+ GC P V TYT LI+   +      A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM---------------- 189
             M +        C+P+ +TY  + DGLCK G + KA E++ K+                
Sbjct: 382 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 435

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               + P+VVTY +L+ G C A+  + A  L   M+  G +PN + ++ +++  CK GK+
Sbjct: 436 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 495

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  +   M + G  P    Y +L+D     GR++ A ++   M  + C  +V +Y  +
Sbjct: 496 DSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAM 555

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+G C+  E E AL L S M  KG  P VVTY  
Sbjct: 556 IDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 589



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 166/363 (45%), Gaps = 29/363 (7%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I + M+    +P P   FN L       K Y     L  R+ + G  P    YNI I   
Sbjct: 164 IINMMMTEGCNPNPSL-FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 63  CKMGRV-SPGFV-----VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           C   ++ SP  +     + G +L +    + V   +  + LC   +  +A  L  ++   
Sbjct: 223 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 282

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G  PD  TY+ +I  LC       A  LF+EM        V   PD  TY+ + D  CK 
Sbjct: 283 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM------VGVTPDVYTYTILIDSFCKA 336

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +++A+ LF +M+    +P VVTYT+LI  +  A    +A  +F  M+D G +PN VT+
Sbjct: 337 GLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 396

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIG----------------VRPDASVYNTLMDGFCL 280
             +++ LCK G + +A  +   +I                   + P+   Y  L+DG C 
Sbjct: 397 GALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK 456

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             +V+ A EL  +M S+GC  +   Y  LI+G+CK  +I+ A  ++ +M   G  P+V T
Sbjct: 457 AHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHT 516

Query: 341 YNT 343
           Y +
Sbjct: 517 YTS 519



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 161/343 (46%), Gaps = 24/343 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L     K K       +F R+   G  P+  TY  L++  CK G +S  F V
Sbjct: 356 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 415

Query: 75  LGRIL----------------RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
             +++                R    P+ VT+ +L+ GLC   ++  A  L   + + GC
Sbjct: 416 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGC 475

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           +P+   Y  LI+G C+ G    A  +F +M     + G +  P   TY+++ D + K+G 
Sbjct: 476 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMT----KCGYL--PSVHTYTSLIDRMFKDGR 529

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A ++  +M  ++  P+VVTYT++I G C   +  +A  L   M ++G  PNVVT+  
Sbjct: 530 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 589

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ L K GK+D +  L   M + G  P+   Y  L++  C  G +++A+ L   M+   
Sbjct: 590 LIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTY 649

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             + +  Y   I G+  +K    +L +  EM S G  P    Y
Sbjct: 650 WPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIAPVY 690



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 152/333 (45%), Gaps = 10/333 (3%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V ++  L   L K    D    L   + S G  P+   Y+ LI+ FCK G++  
Sbjct: 438 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDS 497

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              V  ++ +  + P   T+TSLI  +  + R+  A  + +++    C P+V TYT +I+
Sbjct: 498 AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMID 557

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLCR G +  AL L   M          C P+ +TY+ + DGL K G +D + +LF +M 
Sbjct: 558 GLCRIGESEKALKLLSLMEEKG------CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMS 611

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            +  +P+ VTY  LI   C A   ++A+ L  EM        +  +   +    K+    
Sbjct: 612 RKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS--FI 669

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES--NGCMRDVFSYGI 308
            +  +LE M   G  P A VY  L+D F   GR+  A EL   M    +    D   Y  
Sbjct: 670 ASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYAS 729

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           LI   C   ++E A  LYSEM  +G  P +  +
Sbjct: 730 LIQALCLASQVEEAFRLYSEMTRRGFVPELSVF 762



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 2/305 (0%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L +  ++D  +S   R+      P++ TY  L++ F K  ++     ++  ++     P+
Sbjct: 117 LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 176

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
              F SL+   C E     A  L  ++   GC P    Y   I  +C     + + +L +
Sbjct: 177 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQ-EKLPSPDLLD 235

Query: 147 EMANGNGE-FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
                 GE     C  + +  +     LC  G  DKA +L  +M  +   PD  TY+ +I
Sbjct: 236 LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVI 295

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
              C+A    +A  LF EM   GV P+V T+ ++++  CK G +++A  L E M  +G  
Sbjct: 296 TFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS 355

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           P    Y  L+  +    +V +A ++F  M   GC  +  +YG L++G CK   I  A  +
Sbjct: 356 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 415

Query: 326 YSEML 330
           Y++++
Sbjct: 416 YAKLI 420



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 155/364 (42%), Gaps = 38/364 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L+     D    + K ++  G   D +T     +  CK GR +     
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA--- 94

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  I R  F  D V  T +I GL   S   EA +   ++R   C P+V TY TL++G  +
Sbjct: 95  LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 154

Query: 135 TGH-----TIVAL----------NLFEEMANG--------------NGEFGVVCKPDAIT 165
                    I+ +          +LF  + +               N      C P  + 
Sbjct: 155 KKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVV 214

Query: 166 YSTITDGLCKE------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           Y+     +C +        +D A++++ +M   N   + V   +  R  C    +++A  
Sbjct: 215 YNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQ 274

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  EMM +G  P+  T++ ++  LC   K+++A  L + M  +GV PD   Y  L+D FC
Sbjct: 275 LIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFC 334

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G + +A+ LF  M S GC   V +Y  LI+ Y K K++  A  ++  M+  G RP  V
Sbjct: 335 KAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 394

Query: 340 TYNT 343
           TY  
Sbjct: 395 TYGA 398



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 138/342 (40%), Gaps = 50/342 (14%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           L   G  P   TYN L+      G+V  GF V   +  S F  D  T       LC E R
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
             +A  +  +   F  K D    T +I+GL    +   A++    M   +      C P+
Sbjct: 91  WADALDMIER-EDF--KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNS------CIPN 141

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TY T+  G  K+  +   K +   M  E  NP+   + SL+  +C   D+  A  L  
Sbjct: 142 VVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLN 201

Query: 223 EMMDQGVQPNVVTFNVIMNELCKN------------------------------------ 246
            M   G  P  V +N+ +  +C                                      
Sbjct: 202 RMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFAR 261

Query: 247 -----GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
                GK D+A +L++ M++ G  PD S Y+ ++   C   +V +A  LF  M+  G   
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           DV++Y ILI+ +CK   IE A  L+ EM S G  PTVVTY  
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTA 363



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 157/358 (43%), Gaps = 49/358 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML     P  +  ++ L     K    D+   +F ++   G  P ++TY  LI+  
Sbjct: 466 LLDAMLSSGCEPNHIV-YDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRM 524

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K GR+     VL ++L+   TP+ VT+T++I GLC      +A  L + +   GC P+V
Sbjct: 525 FKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 584

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LI+GL + G   ++L+LF +M+         C P+ +TY  + + LC  G +DKA
Sbjct: 585 VTYTALIDGLGKAGKIDLSLDLFTQMSRKG------CSPNYVTYRVLINHLCAAGLLDKA 638

Query: 183 KELFLKMKD----------------------------ENIN-----PDVVTYTSLIRGFC 209
           + L  +MK                             E +      P    Y  LI  F 
Sbjct: 639 RLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFS 698

Query: 210 YANDWNEAKCLFIEMMD--QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            A     A  L  EMM+    V+ +   +  ++  LC   +++EA RL   M + G  P+
Sbjct: 699 KAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 758

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRD------VFSYGILINGYCKNKE 318
            SV+  L+ G     + + A +L   +    G +        +F++ +++ GY KN E
Sbjct: 759 LSVFVCLIKGLVEVKKWDEALQLCYGICHEVGLLLSYTTQIFLFTFVVIVVGYGKNIE 816


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 171/339 (50%), Gaps = 9/339 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKM 65
           +LR  P P  V ++N +             L + + +   G + P+ YTY  +I+ +CK+
Sbjct: 63  LLRQMPRPNAV-TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 121

Query: 66  GRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
           GRV     V   +L +    P+AV + +LI G C + ++  A     ++   G    V T
Sbjct: 122 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 181

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  L++ L   G    A  L EEM       G    PD  TY+ + +G CKEG V KA E
Sbjct: 182 YNLLVHALFMDGRGTEAYELVEEMG------GKGLAPDVFTYNILINGHCKEGNVKKALE 235

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +F  M    +   VVTYTSLI          E   LF E + +G++P++V +N ++N   
Sbjct: 236 IFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 295

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
            +G +D A  ++  M +  + PD   YNTLM G CL GRV+ A++L   M   G   D+ 
Sbjct: 296 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLV 355

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +Y  LI+GY    +++ AL + +EM++KG  PT++TYN 
Sbjct: 356 TYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 394



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 139/262 (53%), Gaps = 6/262 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+L   L  +        L + +   GL PD++TYNILIN  CK G V     +  
Sbjct: 179 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 238

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + R       VT+TSLI  L  + ++ E   LF +    G +PD+  Y  LIN    +G
Sbjct: 239 NMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 298

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +   A  +  EM            PD +TY+T+  GLC  G VD+A++L  +M    I P
Sbjct: 299 NIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQP 352

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D+VTY +LI G+    D  +A  +  EMM++G  P ++T+N ++  LCKNG+ D+A  ++
Sbjct: 353 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 412

Query: 257 ELMIQIGVRPDASVYNTLMDGF 278
           + M++ G+ PD S Y +L++G 
Sbjct: 413 KEMVENGITPDDSTYISLIEGL 434



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 166/347 (47%), Gaps = 17/347 (4%)

Query: 1   FCIFDYMLRMHPSPPPVCS--FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNIL 58
           F +F  M R+     P+C+  FNI+   L         L L +++      P+  TYN +
Sbjct: 26  FALFADMFRLRL---PLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTV 78

Query: 59  INCFCKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           I  FC  GRV     ++  +  R    P+  T+ ++I G C   R+ EA  +F ++   G
Sbjct: 79  IAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG 138

Query: 118 -CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
             KP+   Y  LI G C  G    AL   + M     E GV       TY+ +   L  +
Sbjct: 139 EVKPEAVMYNALIGGYCDQGKLDTALLYRDRMV----ERGVAMT--VATYNLLVHALFMD 192

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G   +A EL  +M  + + PDV TY  LI G C   +  +A  +F  M  +GV+  VVT+
Sbjct: 193 GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTY 252

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             ++  L K G++ E  +L +  ++ G+RPD  +YN L++    +G ++RA E+   ME 
Sbjct: 253 TSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK 312

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                D  +Y  L+ G C    ++ A  L  EM  +GI+P +VTYNT
Sbjct: 313 KRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNT 359



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 6/316 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ML      P    +N L G        DT L    R+   G+   + TYN+L++  
Sbjct: 130 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 189

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              GR +  + ++  +      PD  T+  LI G C E  + +A  +F  +   G +  V
Sbjct: 190 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 249

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT+LI  L + G       LF+E            +PD + Y+ + +     G +D+A
Sbjct: 250 VTYTSLIYALSKKGQVQETDKLFDEAVRRG------IRPDLVLYNALINSHSTSGNIDRA 303

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+  +M+ + I PD VTY +L+RG C     +EA+ L  EM  +G+QP++VT+N +++ 
Sbjct: 304 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISG 363

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
               G + +A R+   M+  G  P    YN L+ G C  G+ + A+ +   M  NG   D
Sbjct: 364 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 423

Query: 303 VFSYGILINGYCKNKE 318
             +Y  LI G     E
Sbjct: 424 DSTYISLIEGLTTEDE 439


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 179/332 (53%), Gaps = 9/332 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F++M+ ++   P + +  +L   LAK++  D V  ++K++  IG+  +++ YN+LI+  
Sbjct: 152 VFEHMM-VNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHAC 210

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G V     +L  +   C  PD  T+ +LI   C +    EA ++  ++   G KPD+
Sbjct: 211 CKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDI 270

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY +LI+G C+ G    A+ LF+E+ +          P+ +TY+T+ DG C+   +D+A
Sbjct: 271 VTYNSLIHGFCKEGRMREAMRLFKEIRDAT--------PNHVTYTTLIDGYCRLNDLDQA 322

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L  +M+ + + P VVTY S++R  C      +A  L  EM ++ ++P+ VT N ++N 
Sbjct: 323 LRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINA 382

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G M  A ++   M++ G++ D   Y  L+ GFC    ++ AKEL +SM   G    
Sbjct: 383 YCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPS 442

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
             +Y  L++GYC  +  E  L L  E + KG+
Sbjct: 443 YCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGL 474



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 164/357 (45%), Gaps = 43/357 (12%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N+L     K+   +   +L   + S  +FPDL+TYN LI+ +CK G       V  R+ 
Sbjct: 203 YNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRME 262

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R    PD VT+ SLI G C E R+ EA  LF ++R     P+  TYTTLI+G CR     
Sbjct: 263 REGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIR--DATPNHVTYTTLIDGYCRLNDLD 320

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL L EEM    G +     P  +TY++I   LC+ G +  A +L  +M ++ I PD V
Sbjct: 321 QALRLREEM-EAQGLY-----PTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNV 374

Query: 200 T-----------------------------------YTSLIRGFCYANDWNEAKCLFIEM 224
           T                                   Y +LI GFC   + + AK L + M
Sbjct: 375 TCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSM 434

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +D G  P+  T++ +++  C     +   +L +  ++ G+  D S+Y  L+  FC   +V
Sbjct: 435 LDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQV 494

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + AK++F  M+  G + D   Y  L   Y K  +   A  L  EM  + +  T+  Y
Sbjct: 495 DYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMYKRRLMITLKIY 551



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 150/343 (43%), Gaps = 38/343 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     K   +   LS+  R+   G+ PD+ TYN LI+ FCK GR+     +
Sbjct: 233 PDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRL 292

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I  +  TP+ VT+T+LI G C  + + +A  L  ++ A G  P V TY +++  LC 
Sbjct: 293 FKEIRDA--TPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCE 350

Query: 135 TGHTIVALNLFEEMANGNGE-FGVVC----------------------------KPDAIT 165
            G    A  L  EM+    E   V C                            K D  T
Sbjct: 351 IGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFT 410

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI--E 223
           Y  +  G CK   +D AKEL L M D   +P   TY+ L+ G+C  N  NE   L +  E
Sbjct: 411 YKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYC--NQQNEEAVLKLPDE 468

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
            + +G+  +   +  ++   CK  ++D A ++  LM + G   D+ +Y +L   +   G+
Sbjct: 469 FVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGK 528

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
            N A +L   M     M  +  Y  L   Y  +  I   LSL+
Sbjct: 529 ANAASDLLDEMYKRRLMITLKIYRALNASYAGDNSI---LSLF 568



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 157/342 (45%), Gaps = 15/342 (4%)

Query: 6   YMLRMHPSPP--PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           Y L +H   P      F  +   +   KH  ++ S +  ++ +  F  L T   L+    
Sbjct: 48  YQLSLHSQGPCLSWALFKWIESSIPNYKH--SLQSSWTMIHILTKFKHLKTAQSLLEKIA 105

Query: 64  KMGRVSPGFVVLGRILRSCFTPD--AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
               +S    VL  ++R    PD  +  F+ L+          EA  +F  +   G +P 
Sbjct: 106 YRDFLSTQ-SVLSALVRLHDDPDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPH 164

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           +   T L+N L +   T +   ++++MA      GV  + +   Y+ +    CK G V+K
Sbjct: 165 LHACTVLLNSLAKDRLTDMVWKVYKKMA----RIGV--EANIHVYNVLIHACCKSGDVEK 218

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L  +M+ + + PD+ TY +LI  +C      EA  +   M  +G++P++VT+N +++
Sbjct: 219 ADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIH 278

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK G+M EA RL + +      P+   Y TL+DG+C    +++A  L   ME+ G   
Sbjct: 279 GFCKEGRMREAMRLFKEIRD--ATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYP 336

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            V +Y  ++   C+   I  A  L +EM  K I P  VT NT
Sbjct: 337 TVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNT 378


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 175/337 (51%), Gaps = 10/337 (2%)

Query: 9   RMHPSPPPVC--SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +M  S   +C  +FN L   L K         L  ++   G+ P+L+TYN+ I   C+ G
Sbjct: 206 KMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRG 265

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     ++G ++     PD +T+ +LI GLC  S+  EA     K+   G +PD +TY 
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYN 325

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           TLI G C+ G   +A     E   G+  F G V  PD  TY ++ DGLC EG  ++A  L
Sbjct: 326 TLIAGYCKGGMVQLA-----ERIVGDAVFNGFV--PDQFTYRSLIDGLCHEGETNRALAL 378

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F +   + I P+V+ Y +LI+G        EA  L  EM ++G+ P V TFN+++N LCK
Sbjct: 379 FNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCK 438

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G + +A  L+++MI  G  PD   +N L+ G+    ++  A E+   M  NG   DV++
Sbjct: 439 MGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYT 498

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           Y  L+NG CK  + E  +  Y  M+ KG  P + T+N
Sbjct: 499 YNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFN 535



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 173/337 (51%), Gaps = 8/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++   P P  +   N+++G    +K  +  + L K +N  GL PD YTYN LI  +CK G
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNE-GLEPDSYTYNTLIAGYCKGG 335

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V     ++G  + + F PD  T+ SLI GLC E     A ALF +    G KP+V  Y 
Sbjct: 336 MVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYN 395

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLI GL   G  + A  L  EM+    E G++  P+  T++ + +GLCK G V  A  L 
Sbjct: 396 TLIKGLSNQGMILEAAQLANEMS----EKGLI--PEVQTFNILVNGLCKMGCVSDADGLV 449

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M  +   PD+ T+  LI G+        A  +   M+D GV P+V T+N ++N LCK 
Sbjct: 450 KVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKT 509

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            K ++     + M++ G  P+   +N L++  C   +++ A  L   M++     D  ++
Sbjct: 510 SKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTF 569

Query: 307 GILINGYCKNKEIEGALSLYSEMLSK-GIRPTVVTYN 342
           G LI+G+CKN +++GA +L+ +M     +  +  TYN
Sbjct: 570 GTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYN 606



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 178/394 (45%), Gaps = 66/394 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR------- 67
           P V S+N +   L  + ++D    ++ R+   G+ PD+Y++ I +  FCK  R       
Sbjct: 109 PTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRL 168

Query: 68  ----------------------------VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
                                        + G+ + G++L S  +    TF  L++ LC 
Sbjct: 169 LNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCK 228

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN----LFEE------MA 149
           +  + E   L  K+   G  P++FTY   I GLC+ G    A+     L E+      + 
Sbjct: 229 KGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVIT 288

Query: 150 NGNGEFGVVCK--------------------PDAITYSTITDGLCKEGFVDKAKELFLKM 189
             N  +G +CK                    PD+ TY+T+  G CK G V  A+ +    
Sbjct: 289 YNNLIYG-LCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDA 347

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
                 PD  TY SLI G C+  + N A  LF E + +G++PNV+ +N ++  L   G +
Sbjct: 348 VFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMI 407

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            EA++L   M + G+ P+   +N L++G C  G V+ A  L   M S G   D+F++ IL
Sbjct: 408 LEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNIL 467

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+GY    ++E AL +   ML  G+ P V TYN+
Sbjct: 468 IHGYSTQLKMENALEILDVMLDNGVDPDVYTYNS 501



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 163/326 (50%), Gaps = 7/326 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   L+          L   ++  GL P++ T+NIL+N  CKMG VS    +
Sbjct: 389 PNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGL 448

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++   + PD  TF  LI G   + ++  A  +   +   G  PDV+TY +L+NGLC+
Sbjct: 449 VKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCK 508

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T      +  ++ M          C P+  T++ + + LC+   +D+A  L  +MK++++
Sbjct: 509 TSKFEDVMETYKTMVEKG------CAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSV 562

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEAS 253
           NPD VT+ +LI GFC   D + A  LF +M +   V  +  T+N+I++   +   +  A 
Sbjct: 563 NPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAE 622

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L + M+   + PD   Y  ++DGFC TG VN   +  + M  NG +  + + G +IN  
Sbjct: 623 KLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCL 682

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVV 339
           C    +  A  +   M+ KG+ P  V
Sbjct: 683 CVEDRVYEAAGIIHRMVQKGLVPEAV 708



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 159/309 (51%), Gaps = 8/309 (2%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            +++F+R++     P +++YN +++     G       V  R+     TPD  +FT  +K
Sbjct: 95  AVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMK 154

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGE 154
             C  SR   A  L   + + GC+ +V  Y T++ G            LF +M A+G   
Sbjct: 155 SFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVS- 213

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
              +C     T++ +   LCK+G V + ++L  K+    + P++ TY   I+G C   + 
Sbjct: 214 ---LCLS---TFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGEL 267

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           + A  +   +++QG +P+V+T+N ++  LCKN K  EA   L  M+  G+ PD+  YNTL
Sbjct: 268 DGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTL 327

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + G+C  G V  A+ +      NG + D F+Y  LI+G C   E   AL+L++E L KGI
Sbjct: 328 IAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGI 387

Query: 335 RPTVVTYNT 343
           +P V+ YNT
Sbjct: 388 KPNVILYNT 396



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 138/298 (46%), Gaps = 44/298 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FNIL   L K         L K + S G FPD++T+NILI+ +    ++     +
Sbjct: 424 PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L +   PD  T+ SL+ GLC  S+  +    +  +   GC P++FT+  L+  LCR
Sbjct: 484 LDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCR 543

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK---- 190
                 AL L EEM N +        PDA+T+ T+ DG CK G +D A  LF KM+    
Sbjct: 544 YRKLDEALGLLEEMKNKS------VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYK 597

Query: 191 --------------------------------DENINPDVVTYTSLIRGFCYANDWNEAK 218
                                           D  + PD  TY  ++ GFC   + N   
Sbjct: 598 VSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGY 657

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
              +EMM+ G  P++ T   ++N LC   ++ EA+ ++  M+Q G+ P+A   NT+ D
Sbjct: 658 KFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEA--VNTICD 713



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 5/181 (2%)

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV--TYTSLIRGFCYANDWNEAKCLFI 222
           TY ++ + L   G  +  +E+ + M+ EN+   ++   Y   ++ +       EA  +F 
Sbjct: 42  TYRSVIEKLGYYGKFEAMEEVLVDMR-ENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFE 100

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
            M     +P V ++N IM+ L  +G  D+A ++   M   G+ PD   +   M  FC T 
Sbjct: 101 RMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTS 160

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILING-YCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           R + A  L  +M S GC  +V +Y  ++ G Y +N + EG   L+ +ML+ G+   + T+
Sbjct: 161 RPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEG-YELFGKMLASGVSLCLSTF 219

Query: 342 N 342
           N
Sbjct: 220 N 220



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 2/165 (1%)

Query: 181 KAKELFLKMKDE-NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNV 238
           KA E+F  M+ E      + TY S+I    Y   +   + + ++M +  G       +  
Sbjct: 22  KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVG 81

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
            M    + GK+ EA  + E M      P    YN +M     +G  ++A ++++ M   G
Sbjct: 82  AMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRG 141

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              DV+S+ I +  +CK      AL L + M S+G    VV Y T
Sbjct: 142 ITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCT 186


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S N L    AK    D V   FK +   G  P ++TYNI+I+C CK G V     +
Sbjct: 225 PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGL 284

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD VT+ S+I G     R+ +    F +++   C+PDV TY  LIN  C+
Sbjct: 285 FEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCK 344

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   + L  + EM  GNG      KP+ ++YST+ D  CKEG + +A + ++ M+   +
Sbjct: 345 FGKLPIGLEFYREM-KGNG-----LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 398

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TYTSLI   C   + ++A  L  EM+  GV+ NVVT+  +++ LC   +M EA  
Sbjct: 399 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEE 458

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M   GV P+ + YN L+ GF     ++RA EL   ++  G   D+  YG  I G C
Sbjct: 459 LFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLC 518

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++IE A  + +EM   GI+   + Y T
Sbjct: 519 SLEKIEAAKVVMNEMKECGIKANSLIYTT 547



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    F+ LF  L      +  +  F ++    +FP   + N L++ F K+G+       
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 249

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++ +   P   T+  +I  +C E  +  A  LF +++  G  PD  TY ++I+G  +
Sbjct: 250 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 309

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G     +  FEEM +      + C+PD ITY+ + +  CK G +    E + +MK   +
Sbjct: 310 VGRLDDTVCFFEEMKD------MCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 363

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV+Y++L+  FC      +A   +++M   G+ PN  T+  +++  CK G + +A R
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFR 423

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+Q+GV  +   Y  L+DG C   R+  A+ELF  M++ G + ++ SY  LI+G+ 
Sbjct: 424 LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFV 483

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K K ++ AL L +E+  +GI+P ++ Y T
Sbjct: 484 KAKNMDRALELLNELKGRGIKPDLLLYGT 512



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 171/365 (46%), Gaps = 42/365 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K    D  +  F+ +  +   PD+ TYN LINCFCK G++  G   
Sbjct: 295 PDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEF 354

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  +   P+ V++++L+   C E  + +A   +  +R  G  P+ +TYT+LI+  C+
Sbjct: 355 YREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCK 414

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L  EM     E+ VV      TY+ + DGLC    + +A+ELF KM    +
Sbjct: 415 IGNLSDAFRLGNEMLQVGVEWNVV------TYTALIDGLCDAERMKEAEELFGKMDTAGV 468

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ +Y +LI GF  A + + A  L  E+  +G++P+++ +   +  LC   K++ A  
Sbjct: 469 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKV 528

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           ++  M + G++ ++ +Y TLMD +  +G       L   M+       V ++ +LI+G C
Sbjct: 529 VMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC 588

Query: 315 KNK------------------------------------EIEGALSLYSEMLSKGIRPTV 338
           KNK                                    ++E A +L+ +M+ KG+ P  
Sbjct: 589 KNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDR 648

Query: 339 VTYNT 343
             Y +
Sbjct: 649 TAYTS 653



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 163/361 (45%), Gaps = 42/361 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++ L     K       +  +  +  +GL P+ YTY  LI+  CK+G +S  F +
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRL 424

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+     + VT+T+LI GLC   R+ EA  LF K+   G  P++ +Y  LI+G  +
Sbjct: 425 GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVK 484

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL L  E+  G G      KPD + Y T   GLC    ++ AK +  +MK+  I
Sbjct: 485 AKNMDRALELLNEL-KGRG-----IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGI 538

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMM----------------------------- 225
             + + YT+L+  +  + +  E   L  EM                              
Sbjct: 539 KANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVD 598

Query: 226 -------DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
                  D G+Q N   F  +++ LCK+ +++ A+ L E M+Q G+ PD + Y +LMDG 
Sbjct: 599 YFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGN 658

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
              G V  A  L   M   G   D+ +Y  L+ G     +++ A S   EM+ +GI P  
Sbjct: 659 FKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDE 718

Query: 339 V 339
           V
Sbjct: 719 V 719



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 131/276 (47%), Gaps = 5/276 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N L     K K+ D  L L   L   G+ PDL  Y   I   C + ++    VV
Sbjct: 470 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 529

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +       +++ +T+L+          E   L  +++    +  V T+  LI+GLC+
Sbjct: 530 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 589

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A++ F  ++N   +FG+  + +A  ++ + DGLCK+  V+ A  LF +M  + +
Sbjct: 590 NKLVSKAVDYFNRISN---DFGL--QANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 644

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   YTSL+ G     +  EA  L  +M + G++ +++ +  ++  L    ++ +A  
Sbjct: 645 VPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARS 704

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            LE MI  G+ PD  +  +++      G ++ A EL
Sbjct: 705 FLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%)

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           VC P    +  +   L   G +++A + F KMK   + P   +   L+  F      ++ 
Sbjct: 187 VCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDV 246

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           K  F +M+  G +P V T+N++++ +CK G ++ A  L E M   G+ PD   YN+++DG
Sbjct: 247 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 306

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           F   GR++     F  M+   C  DV +Y  LIN +CK  ++   L  Y EM   G++P 
Sbjct: 307 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPN 366

Query: 338 VVTYNT 343
           VV+Y+T
Sbjct: 367 VVSYST 372


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 177/329 (53%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP    FN+L   L +     +  ++F  + S G+   + ++N +I+  C+ G +     
Sbjct: 237 PPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAET 296

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  R+  +  TPD  T+ +LI+GLC   RI +A  +F K+   G KP+   +T LI+  C
Sbjct: 297 LHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHC 356

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G     L L  EM     E GV  +PDA+TY+ I +GLC+   +  A  + ++M+   
Sbjct: 357 KKGDAETMLELHREMR----ERGV--RPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAG 410

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTYT+LI G+C   + + A  +   M+ +GV  + VT+  +++ L K G+  +A 
Sbjct: 411 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAE 470

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R+L  M++ G+ PD + Y  ++D FC  G V     L   M++ G    V +Y +++NG+
Sbjct: 471 RVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGF 530

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK  +++ A  L + M++ G+ P  +TYN
Sbjct: 531 CKLGQMKNADMLLNAMINIGVSPDDITYN 559



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 9/327 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V SFN +   + +    D   +L +R++  G+ PD+YTY  LI   C++GR+     V  
Sbjct: 275 VVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFE 334

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++      P+AV FT LI   C +        L  ++R  G +PD  TY  ++NGLCR  
Sbjct: 335 KMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRAR 394

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  +  EM +         +PD +TY+T+ DG CKE  +D A E+   M  E +  
Sbjct: 395 DLKSASGIVVEMRSAG------LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGL 448

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTYT+LI G   A    +A+ +  EMM+ G++P+  T+ ++++  C+ G +    RLL
Sbjct: 449 DEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLL 508

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M   G +P    YN +M+GFC  G++  A  L  +M + G   D  +Y IL++G+CK+
Sbjct: 509 KEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKH 568

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++     L S   +KG  P +  Y +
Sbjct: 569 GKVTDIEELKS---AKGTVPDLGVYTS 592



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 127/239 (53%), Gaps = 6/239 (2%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           EA A + +L   G  P+   +  L+  L R G    A N+F+EM +         +   +
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRG------VRRTVV 276

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           +++T+  G+C+ G +D A+ L  +M +  + PDV TY +LI+G C      +A+ +F +M
Sbjct: 277 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 336

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
             +G++PN V F ++++  CK G  +    L   M + GVRPDA  YN +++G C    +
Sbjct: 337 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 396

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A  + V M S G   D  +Y  LI+GYCK +E++ A+ +   M+++G+    VTY  
Sbjct: 397 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTA 455



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 3/124 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ ++     +     T L L K + + G  P + TYN+++N FCK+G++    ++
Sbjct: 483 PDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADML 542

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++    +PD +T+  L+ G C   ++ +   L +   A G  PD+  YT+++  + +
Sbjct: 543 LNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKS---AKGTVPDLGVYTSIVGEIVK 599

Query: 135 TGHT 138
              T
Sbjct: 600 KKTT 603


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 176/327 (53%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N++ G L + +  D  + L + +   GL PDLYTY+ILIN FC   R     ++
Sbjct: 248 PNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLM 307

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+ +T+ +LI G   +  I +A  +  ++ A G + ++  + TL+NG+C+
Sbjct: 308 LLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCK 367

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL + +EM     E GV  +PD+ TYS + +G C+   + +A EL  +MK   +
Sbjct: 368 AGKMEKALEIMQEMM----EKGV--EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 421

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V+TY+ +I G C   +      +  EM+  G++PN V +  +M    K G+++E+  
Sbjct: 422 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 481

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +LE M + G+ PD   YN+L+ GFC   R+  A+   + M       +  +YG  I+GY 
Sbjct: 482 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYS 541

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K  E+E A   ++EMLS G+ P V  Y
Sbjct: 542 KAGEMEIADRYFNEMLSCGVLPNVGIY 568



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 177/338 (52%), Gaps = 9/338 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+ +   P P+ ++N L     +    +    +   + + G+  +L  +N L+N  CK G
Sbjct: 311 MIDVGLKPEPI-TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAG 369

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++     ++  ++     PD+ T++ LI+G C    +  A  L  +++     P V TY+
Sbjct: 370 KMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYS 429

Query: 127 TLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            +INGLCR G+      +  EM  NG        KP+A+ Y+T+     KEG V++++ +
Sbjct: 430 VIINGLCRCGNLQGTNAILREMVMNG-------LKPNAVVYTTLMTAHAKEGRVEESRMI 482

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             +M+++ I PDV  Y SLI GFC A    EA+   +EM+++ ++PN  T+   ++   K
Sbjct: 483 LERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 542

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G+M+ A R    M+  GV P+  +Y  L++G C  G V  A  +F  + S   ++DV +
Sbjct: 543 AGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQT 602

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y +LI+G  +N ++  A  ++SE+  KG+ P   TYN+
Sbjct: 603 YSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNS 640



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 170/342 (49%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D M +     P V +++++   L +  +     ++ + +   GL P+   Y  L+ 
Sbjct: 410 FELLDEM-KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMT 468

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K GRV    ++L R+      PD   + SLI G C   R+ EA     ++     +P
Sbjct: 469 AHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRP 528

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  TY   I+G  + G   +A   F EM +     GV+  P+   Y+ + +G CKEG V 
Sbjct: 529 NAHTYGAFIDGYSKAGEMEIADRYFNEMLS----CGVL--PNVGIYTALIEGHCKEGNVT 582

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  +F  +    +  DV TY+ LI G       +EA  +F E+ ++G+ PN  T+N ++
Sbjct: 583 EAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLI 642

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G +D+AS+LLE M   G+ PD   YN L+DG C  G + RAK LF  +E  G  
Sbjct: 643 SGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLT 702

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  +Y  +++GYCK+K    A  L  EML +G+ P    YN
Sbjct: 703 PNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN 744



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 168/341 (49%), Gaps = 11/341 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M   H   P V ++  +     K  +      +   +   G  P+L TYN++I   
Sbjct: 202 VFDGMC-AHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGL 260

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+   +     +   ++     PD  T+  LI G C E R  EA  +  ++   G KP+ 
Sbjct: 261 CRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEP 320

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA--ITYSTITDGLCKEGFVD 180
            TY  LI+G  R G    A  + +EM        V C  +A  I ++T+ +G+CK G ++
Sbjct: 321 ITYNALIDGFMRQGDIEQAFRIKDEM--------VACGIEANLIIWNTLLNGVCKAGKME 372

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA E+  +M ++ + PD  TY+ LI G C   +   A  L  EM  + + P V+T++VI+
Sbjct: 373 KALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVII 432

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N LC+ G +   + +L  M+  G++P+A VY TLM      GRV  ++ +   M   G +
Sbjct: 433 NGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGIL 492

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            DVF Y  LI G+CK K +E A +   EML + +RP   TY
Sbjct: 493 PDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTY 533



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 168/343 (48%), Gaps = 8/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F ++L        V ++++L   L++N        +F  L   GL P+ +TYN LI+
Sbjct: 585 FSVFRFILSRR-VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLIS 643

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G V     +L  +      PD VT+  LI GLC    I  A  LF  +   G  P
Sbjct: 644 GSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 703

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  TY  +++G C++ +   A  L EEM       GV   PDA  Y+ I +  CKE   +
Sbjct: 704 NCVTYAAMVDGYCKSKNPTAAFQLLEEML----LRGV--PPDAFIYNVILNFCCKEEKFE 757

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA +LF +M ++      V++ +LI G+C +    EA  L  EM+++   PN VT+  ++
Sbjct: 758 KALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI 816

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G M EA RL   M +  V P A  Y +L+ G+   G ++    LF  M + G  
Sbjct: 817 DHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIE 876

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D  +Y ++I+ YC+   +  A  L  E+L KG+  +V  Y+ 
Sbjct: 877 PDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDA 919



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 167/329 (50%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++       +K    +     F  + S G+ P++  Y  LI   CK G V+  F V
Sbjct: 528 PNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSV 587

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              IL      D  T++ LI GL    ++ EA  +F++L+  G  P+ FTY +LI+G C+
Sbjct: 588 FRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCK 647

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L EEM            PD +TY+ + DGLCK G +++AK LF  ++   +
Sbjct: 648 QGNVDKASQLLEEMCIKG------INPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 701

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY +++ G+C + +   A  L  EM+ +GV P+   +NVI+N  CK  K ++A  
Sbjct: 702 TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALD 761

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M++ G     S +NTL++G+C +G++  A  L   M     + +  +Y  LI+  C
Sbjct: 762 LFQEMLEKGFASTVS-FNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNC 820

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +  A  L+ EM  + + PT  TY +
Sbjct: 821 KAGMMGEAKRLWLEMQERNVMPTAKTYTS 849



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 168/334 (50%), Gaps = 7/334 (2%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           M+   P    +  L    AK    +    + +R+   G+ PD++ YN LI  FCK  R+ 
Sbjct: 453 MNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRME 512

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
                L  +L     P+A T+ + I G      +  A   F ++ + G  P+V  YT LI
Sbjct: 513 EARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 572

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G C+ G+   A ++F  + +           D  TYS +  GL + G + +A  +F ++
Sbjct: 573 EGHCKEGNVTEAFSVFRFILSRR------VLQDVQTYSVLIHGLSRNGKMHEAFGIFSEL 626

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           +++ + P+  TY SLI G C   + ++A  L  EM  +G+ P++VT+N++++ LCK G++
Sbjct: 627 QEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEI 686

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           + A  L + +   G+ P+   Y  ++DG+C +     A +L   M   G   D F Y ++
Sbjct: 687 ERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVI 746

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +N  CK ++ E AL L+ EML KG   T V++NT
Sbjct: 747 LNFCCKEEKFEKALDLFQEMLEKGFAST-VSFNT 779



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 169/322 (52%), Gaps = 8/322 (2%)

Query: 23  LFGCLAKNKHYDTVL--SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           L  C+ +N      +  S+ K   S    P+   +++L++ + KMG +     V      
Sbjct: 114 LIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKN 173

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
             F P  ++  SL+  L   +++     +F  + A    PDV+TYT +I+  C+ G+   
Sbjct: 174 FEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKD 233

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A  +  EM    GE G  C P+ +TY+ I  GLC+   +D+A EL   M D+ + PD+ T
Sbjct: 234 AKRVLLEM----GEKG--CSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYT 287

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  LI GFC      EAK + +EM+D G++P  +T+N +++   + G +++A R+ + M+
Sbjct: 288 YDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMV 347

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             G+  +  ++NTL++G C  G++ +A E+   M   G   D  +Y +LI G+C+ + + 
Sbjct: 348 ACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMA 407

Query: 321 GALSLYSEMLSKGIRPTVVTYN 342
            A  L  EM  + + PTV+TY+
Sbjct: 408 RAFELLDEMKKRKLAPTVLTYS 429



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 153/294 (52%), Gaps = 6/294 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P L + N L+    K  +V   + V   +      PD  T+T++I   C    + +A  +
Sbjct: 178 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 237

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             ++   GC P++ TY  +I GLCR      A+ L   M +     G+V  PD  TY  +
Sbjct: 238 LLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDK----GLV--PDLYTYDIL 291

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +G C E    +AK + L+M D  + P+ +TY +LI GF    D  +A  +  EM+  G+
Sbjct: 292 INGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGI 351

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           + N++ +N ++N +CK GKM++A  +++ M++ GV PD+  Y+ L++G C    + RA E
Sbjct: 352 EANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFE 411

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L   M+       V +Y ++ING C+   ++G  ++  EM+  G++P  V Y T
Sbjct: 412 LLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTT 465



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 164/350 (46%), Gaps = 42/350 (12%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + ++NIL   L K    +   +LF  +   GL P+  TY  +++ +CK    +  F +
Sbjct: 668  PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 727

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L  +L     PDA  +  ++   C E +  +A  LF ++   G    V ++ TLI G C+
Sbjct: 728  LEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCK 786

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            +G    A +L EEM            P+ +TY+++ D  CK G + +AK L+L+M++ N+
Sbjct: 787  SGKLQEANHLLEEMIEKQ------FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNV 840

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             P   TYTSL+ G+    + +E   LF EM+ +G++P+ +T+ V+++  C+ G + EA +
Sbjct: 841  MPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACK 900

Query: 255  LLELMIQIGVRPDASVYNTLMD-----------------------------------GFC 279
            L + ++  G+    + Y+ L+                                    GF 
Sbjct: 901  LKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQ 960

Query: 280  LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            + G ++ A E+  SM   G + +  S G L++G       E + +L  +M
Sbjct: 961  IAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 1010


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 175/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A  L  EM  +G++P+ +T+  +++  CK 
Sbjct: 271 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 331 GDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYN 426



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 167/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A  L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PDA  Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 99/171 (57%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+
Sbjct: 152 FCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++ 
Sbjct: 212 VYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 272 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 322



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 12/231 (5%)

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTITDG 172
           Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +   
Sbjct: 22  YCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIXETXGTQRSDJYVFSGLITA 81

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
             + GF+  A E +   ++        T   ++        +      + E+++ G   +
Sbjct: 82  YLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPAS 141

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           +  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++    L  
Sbjct: 142 LYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS 201

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 202 AMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 252


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S N L    AK    D V   FK +   G  P ++TYNI+I+C CK G V     +
Sbjct: 93  PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGL 152

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD VT+ S+I G     R+ +    F +++   C+PDV TY  LIN  C+
Sbjct: 153 FEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCK 212

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   + L  + EM  GNG      KP+ ++YST+ D  CKEG + +A + ++ M+   +
Sbjct: 213 FGKLPIGLEFYREM-KGNG-----LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 266

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TYTSLI   C   + ++A  L  EM+  GV+ NVVT+  +++ LC   +M EA  
Sbjct: 267 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEE 326

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M   GV P+ + YN L+ GF     ++RA EL   ++  G   D+  YG  I G C
Sbjct: 327 LFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLC 386

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++IE A  + +EM   GI+   + Y T
Sbjct: 387 SLEKIEAAKVVMNEMKECGIKANSLIYTT 415



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    F+ LF  L      +  +  F ++    +FP   + N L++ F K+G+       
Sbjct: 58  PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 117

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++ +   P   T+  +I  +C E  +  A  LF +++  G  PD  TY ++I+G  +
Sbjct: 118 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 177

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G     +  FEEM +      + C+PD ITY+ + +  CK G +    E + +MK   +
Sbjct: 178 VGRLDDTVCFFEEMKD------MCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 231

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV+Y++L+  FC      +A   +++M   G+ PN  T+  +++  CK G + +A R
Sbjct: 232 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFR 291

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+Q+GV  +   Y  L+DG C   R+  A+ELF  M++ G + ++ SY  LI+G+ 
Sbjct: 292 LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFV 351

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K K ++ AL L +E+  +GI+P ++ Y T
Sbjct: 352 KAKNMDRALELLNELKGRGIKPDLLLYGT 380



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 171/365 (46%), Gaps = 42/365 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K    D  +  F+ +  +   PD+ TYN LINCFCK G++  G   
Sbjct: 163 PDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEF 222

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  +   P+ V++++L+   C E  + +A   +  +R  G  P+ +TYT+LI+  C+
Sbjct: 223 YREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCK 282

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L  EM     E+ VV      TY+ + DGLC    + +A+ELF KM    +
Sbjct: 283 IGNLSDAFRLGNEMLQVGVEWNVV------TYTALIDGLCDAERMKEAEELFGKMDTAGV 336

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ +Y +LI GF  A + + A  L  E+  +G++P+++ +   +  LC   K++ A  
Sbjct: 337 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKV 396

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           ++  M + G++ ++ +Y TLMD +  +G       L   M+       V ++ +LI+G C
Sbjct: 397 VMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC 456

Query: 315 KNK------------------------------------EIEGALSLYSEMLSKGIRPTV 338
           KNK                                    ++E A +L+ +M+ KG+ P  
Sbjct: 457 KNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDR 516

Query: 339 VTYNT 343
             Y +
Sbjct: 517 TAYTS 521



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 163/361 (45%), Gaps = 42/361 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++ L     K       +  +  +  +GL P+ YTY  LI+  CK+G +S  F +
Sbjct: 233 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRL 292

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+     + VT+T+LI GLC   R+ EA  LF K+   G  P++ +Y  LI+G  +
Sbjct: 293 GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVK 352

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL L  E+  G G      KPD + Y T   GLC    ++ AK +  +MK+  I
Sbjct: 353 AKNMDRALELLNEL-KGRG-----IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGI 406

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMM----------------------------- 225
             + + YT+L+  +  + +  E   L  EM                              
Sbjct: 407 KANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVD 466

Query: 226 -------DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
                  D G+Q N   F  +++ LCK+ +++ A+ L E M+Q G+ PD + Y +LMDG 
Sbjct: 467 YFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGN 526

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
              G V  A  L   M   G   D+ +Y  L+ G     +++ A S   EM+ +GI P  
Sbjct: 527 FKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDE 586

Query: 339 V 339
           V
Sbjct: 587 V 587



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 131/276 (47%), Gaps = 5/276 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N L     K K+ D  L L   L   G+ PDL  Y   I   C + ++    VV
Sbjct: 338 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 397

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +       +++ +T+L+          E   L  +++    +  V T+  LI+GLC+
Sbjct: 398 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 457

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A++ F  ++N   +FG+  + +A  ++ + DGLCK+  V+ A  LF +M  + +
Sbjct: 458 NKLVSKAVDYFNRISN---DFGL--QANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 512

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   YTSL+ G     +  EA  L  +M + G++ +++ +  ++  L    ++ +A  
Sbjct: 513 VPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARS 572

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            LE MI  G+ PD  +  +++      G ++ A EL
Sbjct: 573 FLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 608



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%)

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           VC P    +  +   L   G +++A + F KMK   + P   +   L+  F      ++ 
Sbjct: 55  VCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDV 114

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           K  F +M+  G +P V T+N++++ +CK G ++ A  L E M   G+ PD   YN+++DG
Sbjct: 115 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 174

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           F   GR++     F  M+   C  DV +Y  LIN +CK  ++   L  Y EM   G++P 
Sbjct: 175 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPN 234

Query: 338 VVTYNT 343
           VV+Y+T
Sbjct: 235 VVSYST 240


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 181/344 (52%), Gaps = 11/344 (3%)

Query: 4   FDYM----LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           +DY+    + M+ SP  + SFN++   L K +  D  + +F+ +      PD YTY  L+
Sbjct: 171 YDYVVNSNMNMNISPNGL-SFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLM 229

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +  CK  R+    ++L  +     +P  V +  LI GLC +  +     L   +   GC 
Sbjct: 230 DGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCV 289

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+  TY TLI+GLC  G    A++L E M +        C P+ +TY T+ +GL K+   
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK------CIPNDVTYGTLINGLVKQRRA 343

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
             A  L   M++   + +   Y+ LI G        EA  L+ +M ++G +PN+V ++V+
Sbjct: 344 TDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVL 403

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LC+ GK +EA  +L  MI  G  P+A  Y++LM GF  TG    A +++  M+  GC
Sbjct: 404 VDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGC 463

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            R+ F Y +LI+G C    ++ A+ ++S+ML+ GI+P  V Y++
Sbjct: 464 SRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSS 507



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 178/344 (51%), Gaps = 10/344 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M     SP PV  +N+L   L K      V  L   +   G  P+  TYN LI+  
Sbjct: 244 LLDEMQSEGCSPSPVI-YNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G++     +L R++ S   P+ VT+ +LI GL  + R  +A  L + +   G   + 
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQ 362

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+ LI+GL + G    A++L+ +MA         CKP+ + YS + DGLC+EG  ++A
Sbjct: 363 HIYSVLISGLFKEGKAEEAMSLWRKMAEKG------CKPNIVVYSVLVDGLCREGKPNEA 416

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           KE+  +M      P+  TY+SL++GF       EA  ++ EM   G   N   ++V+++ 
Sbjct: 417 KEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDG 476

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM---ESNGC 299
           LC  G++ EA  +   M+ IG++PD   Y++++ G C  G ++ A +L+  M   E    
Sbjct: 477 LCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKS 536

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             DV +Y IL++G C  K+I  A+ L + ML +G  P V+T NT
Sbjct: 537 QPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNT 580



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 151/309 (48%), Gaps = 27/309 (8%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +++L   L K    +  +SL++++   G  P++  Y++L++  C+ G+ +    +L R++
Sbjct: 365 YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMI 424

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            S   P+A T++SL+KG        EA  ++ ++   GC  + F Y+ LI+GLC  G   
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVK 484

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM---KDENINP 196
            A+ ++ +M        +  KPD + YS+I  GLC  G +D A +L+ +M   ++    P
Sbjct: 485 EAMMVWSKM------LTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQP 538

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR-- 254
           DVVTY  L+ G C   D + A  L   M+D+G  P+V+T N  +N L +     +  R  
Sbjct: 539 DVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSF 598

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L EL++++  R   S       G C    V   K L              ++ +++   C
Sbjct: 599 LEELVVRLLKRQRVS-------GACTIVEVMLGKYLAPKTS---------TWAMIVREIC 642

Query: 315 KNKEIEGAL 323
           K K+I  A+
Sbjct: 643 KPKKINAAI 651



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 3/230 (1%)

Query: 105 EAAALFTKL-RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
           +A  LF ++   F CK  V ++ +++N +   G     L  ++ + N N    +   P+ 
Sbjct: 130 KAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNI--SPNG 187

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           ++++ +   LCK  FVD+A E+F  M +    PD  TY +L+ G C     +EA  L  E
Sbjct: 188 LSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDE 247

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M  +G  P+ V +NV+++ LCK G +   ++L++ M   G  P+   YNTL+ G CL G+
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           +++A  L   M S+ C+ +  +YG LING  K +    A+ L S M  +G
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 186/386 (48%), Gaps = 46/386 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDT--------VLSLFKRLNSIGLFP---- 50
           +FD + R   +P P  S N     LA+               L+LF R+      P    
Sbjct: 96  MFDELFR-QATPVPGRSLNGFLTALARATSSSACITDGPALALALFNRVCREQAGPRVVP 154

Query: 51  -DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA-A 108
             ++TY+IL++C C+  R   G V+ G ILR+      +T ++L+K LC  +R  EA   
Sbjct: 155 LTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNV 214

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN------------------ 150
           L  ++   GC P+VF+Y+ ++ GLC    +  AL+LF+ MA                   
Sbjct: 215 LLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHG 274

Query: 151 --GNGEFGVVC-----------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
               GE G  C           KPD +TY+ I D LCK   +DKA+ +  +M      PD
Sbjct: 275 FFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPD 334

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            VTY  +I G+       EA  +F +M  +G+ PN+V  N  +  LCK+G+  EA+ + +
Sbjct: 335 TVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFD 394

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M   G +PD   Y TL+ G+   G       LF SM+SNG   D   + ILI+ Y K  
Sbjct: 395 SMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRG 454

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++ A+ +++EM  +G+ P VVTY+T
Sbjct: 455 MVDDAMLIFTEMQQQGVSPDVVTYST 480



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 173/341 (50%), Gaps = 6/341 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M       P + S+  L    A    +  ++ LF  + S G+  D   +NILI+ +
Sbjct: 392 IFDSMT-AKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAY 450

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G V    ++   + +   +PD VT++++I       R+ +A   F ++ A G +P+ 
Sbjct: 451 AKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNT 510

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y ++I G C  G  + A  L  EM N       + +PD + ++++ + LCK+G V  A
Sbjct: 511 AVYHSIIQGFCMHGGLVKAKELVSEMINKG-----IPRPDIVFFNSVINSLCKDGRVMDA 565

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++F  + D    PDV+T+TSLI G+C     ++A  +   M   GV+ ++VT++ +++ 
Sbjct: 566 HDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDG 625

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             KNG++++   L   M + GV+P+   Y  ++ G    GR   A++ F  M  +G    
Sbjct: 626 YFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVT 685

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V  YGI++ G C+N   + A+ L+ ++ +  ++ ++   NT
Sbjct: 686 VSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNT 726



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 168/326 (51%), Gaps = 13/326 (3%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FNIL    AK    D  + +F  +   G+ PD+ TY+ +I+ F +MGR++       +++
Sbjct: 443 FNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMV 502

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPDVFTYTTLINGLCRTGHT 138
                P+   + S+I+G C    +++A  L +++   G  +PD+  + ++IN LC+ G  
Sbjct: 503 ARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRV 562

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
           + A ++F+ +    GE     +PD IT++++ DG C  G +DKA ++   M+   +  D+
Sbjct: 563 MDAHDIFD-LVTDIGE-----RPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDI 616

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY++L+ G+      N+   LF EM  +GV+PN VT+ +++  L + G+   A +    
Sbjct: 617 VTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE 676

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL---INGYCK 315
           MI+ G     S+Y  ++ G C   R N A E  +  +  G M   FS  IL   IN   K
Sbjct: 677 MIESGTTVTVSIYGIILGGLC---RNNCADEAIILFQKLGTMNVKFSITILNTMINAMYK 733

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTY 341
            +  E A  L++ + + G+ P   TY
Sbjct: 734 VQRKEEAKELFATISASGLLPNESTY 759



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 159/332 (47%), Gaps = 9/332 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSPGF 72
           P V S++I+   L  N      L LF+ +   G    P++  YN +I+ F K G      
Sbjct: 226 PNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKAC 285

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   + R    PD VT+  +I  LC    + +A  +  ++   G +PD  TY  +I+G 
Sbjct: 286 SLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGY 345

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
              G    A  +F +M +     G++  P+ +  ++    LCK G   +A E+F  M  +
Sbjct: 346 ATLGRLKEAAKMFRKMKSR----GLI--PNIVICNSFLASLCKHGRSKEAAEIFDSMTAK 399

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              PD+V+Y +L+ G+     + +   LF  M   G+  +   FN++++   K G +D+A
Sbjct: 400 GHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDA 459

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             +   M Q GV PD   Y+T++  F   GR+  A E F  M + G   +   Y  +I G
Sbjct: 460 MLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQG 519

Query: 313 YCKNKEIEGALSLYSEMLSKGI-RPTVVTYNT 343
           +C +  +  A  L SEM++KGI RP +V +N+
Sbjct: 520 FCMHGGLVKAKELVSEMINKGIPRPDIVFFNS 551



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 125/273 (45%), Gaps = 6/273 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  FN +   L K+        +F  +  IG  PD+ T+  LI+ +C +G++   F +
Sbjct: 544 PDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKI 603

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +       D VT+++L+ G     RI +   LF +++  G KP+  TY  ++ GL R
Sbjct: 604 LDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR 663

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T+ A   F EM        V        Y  I  GLC+    D+A  LF K+   N+
Sbjct: 664 AGRTVAARKKFHEMIESGTTVTVS------IYGIILGGLCRNNCADEAIILFQKLGTMNV 717

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              +    ++I          EAK LF  +   G+ PN  T+ V++  L K+G +++A+ 
Sbjct: 718 KFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANN 777

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           +   M + G+ P + + N ++      G + +A
Sbjct: 778 MFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKA 810


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 175/332 (52%), Gaps = 6/332 (1%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R H    P  +   +   L K K++  V   +K +   G    LY +NIL++ FCK G +
Sbjct: 93  REHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEI 152

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
               +V   I +    P  V+F +L+ G      + E   L   + A G +PDV+TY+ L
Sbjct: 153 RLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVL 212

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           INGLC+      A  LF+EM     E G+V  P+ +T++T+ DG CK G +D A E++ +
Sbjct: 213 INGLCKESKMDEAHELFDEML----EKGLV--PNGVTFTTLIDGHCKNGKLDLAMEIYKQ 266

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           +  + ++PD++TY +LI GFC   D  + + L  EM  +G++P+ +T+  +++  CK G 
Sbjct: 267 ILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGD 326

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           ++ A    + MI+  +R D  VY  L+ G C  GR   A+++   M S G   D  +Y I
Sbjct: 327 LETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTI 386

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           ++N +CKN ++     L  EM   G  P+VVT
Sbjct: 387 VMNEFCKNGDVNTGSKLLKEMQRDGHVPSVVT 418



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G    ++ +  L++  C+ G   +A  +F+ +     ++G+  KP  ++++T+ +G  K 
Sbjct: 131 GYPASLYFFNILMHRFCKEGEIRLAQLVFDAIT----KWGL--KPSVVSFNTLMNGYIKM 184

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +D+   L   M      PDV TY+ LI G C  +  +EA  LF EM+++G+ PN VTF
Sbjct: 185 GILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTF 244

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++  CKNGK+D A  + + ++  G+ PD   YNTL+ GFC  G + + ++L   M  
Sbjct: 245 TTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSM 304

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G   D  +Y  LI+G CK  ++E A     +M+ + IR   V Y 
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYT 350



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 97/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CKEG +  A+ +F  +    + P VV++ +L+ G+      +E   L   M   G QP+V
Sbjct: 147 CKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDV 206

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMDEA  L + M++ G+ P+   + TL+DG C  G+++ A E++  
Sbjct: 207 YTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQ 266

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + S G   D+ +Y  LI G+CK  +++    L  EM  KG++P  +TY T
Sbjct: 267 ILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTT 316



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +
Sbjct: 13  LHSYCTMIHFLCTHQMLPEAKSLIQVIVSRKGKDSASAVFAAILETKGTQRSDIYVFSGL 72

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E F   ++        T   ++        +      + E+++ G 
Sbjct: 73  ITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEILECGY 132

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK G++  A  + + + + G++P    +NTLM+G+   G ++    
Sbjct: 133 PASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFR 192

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 193 LKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTT 246


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 179/339 (52%), Gaps = 9/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F++M R++   P + +  +L   LAK++  DTV  ++K++  +G+  +++ YN+L++  
Sbjct: 158 VFEHM-RVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHAC 216

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G V     VL  +   C  PD  T+ +LI   C +    EA ++  ++   G  PD+
Sbjct: 217 CKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDI 276

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FTY +LI G CR G    A+ LF ++ +          P+ +TY+++ DG C+   +D+A
Sbjct: 277 FTYNSLIYGFCREGRMREAVQLFRDIKD--------VTPNHVTYTSLIDGYCRVNDLDEA 328

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M ++ + P V+TY S++R  C      +A  L  EM ++ ++P+ VT N ++N 
Sbjct: 329 LRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINA 388

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G M  A ++ + M+  G++ D   Y  L+ GFC    +++AKEL   M   G    
Sbjct: 389 YCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPS 448

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +Y  L++ YCK +  E  + L  E++ +G+   V  Y
Sbjct: 449 YCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVY 487



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 2/153 (1%)

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           D ++N  V+++  ++ G       +EA  +F  M   G +P++    V++N L K+   D
Sbjct: 131 DPDVNSHVLSWLVIVYGNSKMT--HEAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTD 188

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
              ++ + M+++GV  +  VYN L+   C +G V +A+++   ME      D+F+Y  LI
Sbjct: 189 TVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLI 248

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + YCK      ALS+   M   GI P + TYN+
Sbjct: 249 SLYCKKGMHYEALSVQDRMEMAGISPDIFTYNS 281


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 180/340 (52%), Gaps = 10/340 (2%)

Query: 6   YMLRM--HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           ++LR+  H + P   S+  L   L   +     + L + + + G+ PD+ TY  LI   C
Sbjct: 100 FLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLC 159

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
               V     +L  +  S   P+ V ++ L++G C   R    + +F ++   G +PDV 
Sbjct: 160 DAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVV 219

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            YT LI+ LCR G    A  + ++M     E G+  +P+ +TY+ + + +CKEG V +A 
Sbjct: 220 MYTGLIDSLCREGKVKKATQVMDKMM----ERGL--EPNVVTYNVLINSMCKEGSVKEAM 273

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM--DQGVQPNVVTFNVIMN 241
            L   M ++ +  D VTY +LI G     + +EA  L  EM+  +  V+PNVVTFN +++
Sbjct: 274 SLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIH 333

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G+M +A ++ ++M + G   +   +N L+ G     +V +A EL   M S+G   
Sbjct: 334 GLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEP 393

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           D F+Y ILING+CK  +++ A SL S+M   GI P +V Y
Sbjct: 394 DSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHY 433



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 170/337 (50%), Gaps = 43/337 (12%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           L+S+    D  +YN ++   C+ G      + L R++     P AV++T+L++ LCAE R
Sbjct: 69  LSSLPSVRDAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERR 128

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
             +A  L   ++A G +PDV TY TLI GLC       A+ L  EM     E G+  +P+
Sbjct: 129 TGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMC----ESGI--EPN 182

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            + YS +  G CK G  +   ++F +M    I PDVV YT LI   C      +A  +  
Sbjct: 183 VVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMD 242

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNG----------------------------------- 247
           +MM++G++PNVVT+NV++N +CK G                                   
Sbjct: 243 KMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVL 302

Query: 248 KMDEASRLLELMI--QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           +MDEA  LLE MI  +  V P+   +N+++ G C TGR+ +A ++   M  NGC  ++ +
Sbjct: 303 EMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVT 362

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +LI G  +  +++ A+ L  EM S G+ P   TY+
Sbjct: 363 FNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYS 399



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 144/261 (55%), Gaps = 10/261 (3%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           DAV++ +++  LC +   ++AA    ++ A   +P   +YTTL+  LC    T  A+ L 
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 146 EEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
            +M A+G        +PD +TY T+  GLC    VDKA EL  +M +  I P+VV Y+ L
Sbjct: 137 RDMQASG-------VRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCL 189

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           ++G+C A  W     +F EM  +G++P+VV +  +++ LC+ GK+ +A+++++ M++ G+
Sbjct: 190 LQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGL 249

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            P+   YN L++  C  G V  A  L  +M   G   D  +Y  LI G     E++ A+ 
Sbjct: 250 EPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMG 309

Query: 325 LYSEMLSKG--IRPTVVTYNT 343
           L  EM+     + P VVT+N+
Sbjct: 310 LLEEMIHGETMVEPNVVTFNS 330



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 169/364 (46%), Gaps = 42/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L      D  + L + +   G+ P++  Y+ L+  +CK GR      V
Sbjct: 146 PDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKV 205

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD V +T LI  LC E ++ +A  +  K+   G +P+V TY  LIN +C+
Sbjct: 206 FEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCK 265

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM--KDE 192
            G    A++L   M     E GV    DA+TY+T+  GL     +D+A  L  +M   + 
Sbjct: 266 EGSVKEAMSLRNNML----EKGVAL--DAVTYNTLITGLSGVLEMDEAMGLLEEMIHGET 319

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + P+VVT+ S+I G C      +A  +   M + G   N+VTFN+++  L +  K+ +A
Sbjct: 320 MVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKA 379

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG-------------- 298
             L++ M   G+ PD+  Y+ L++GFC   +V+RA+ L   M  +G              
Sbjct: 380 MELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAA 439

Query: 299 --------------------CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
                               C  DV +Y  +I+G C+ ++ + A      ML +G+ P  
Sbjct: 440 LCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDS 499

Query: 339 VTYN 342
           VTY+
Sbjct: 500 VTYS 503



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 162/364 (44%), Gaps = 40/364 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ L     K   ++ V  +F+ ++  G+ PD+  Y  LI+  C+ G+V     V
Sbjct: 181 PNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQV 240

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + +++     P+ VT+  LI  +C E  + EA +L   +   G   D  TY TLI GL  
Sbjct: 241 MDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSG 300

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF---------------- 178
                 A+ L EEM +G      + +P+ +T++++  GLCK G                 
Sbjct: 301 VLEMDEAMGLLEEMIHGE----TMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGC 356

Query: 179 -------------------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                              V KA EL  +M    + PD  TY+ LI GFC     + A+ 
Sbjct: 357 ACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAES 416

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  +M   G++P +V +  ++  LC+ G M++A    + M +   + D   Y+T++ G C
Sbjct: 417 LLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHK-NCKLDVVAYSTMIHGAC 475

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
                  A+E    M   G + D  +Y +LIN +  + ++  A  +  +M + G  P V 
Sbjct: 476 RLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVA 535

Query: 340 TYNT 343
            +++
Sbjct: 536 VFDS 539



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 144/319 (45%), Gaps = 42/319 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   + K       +SL   +   G+  D  TYN LI     +  +     +
Sbjct: 251 PNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGL 310

Query: 75  LGRILR--SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           L  ++   +   P+ VTF S+I GLC   R+ +A  +   +   GC  ++ T+  LI GL
Sbjct: 311 LEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGL 370

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            R      A+ L +EMA+   E      PD+ TYS + +G CK   VD+A+ L  KM+ +
Sbjct: 371 LRVHKVKKAMELMDEMASSGLE------PDSFTYSILINGFCKMWQVDRAESLLSKMRRD 424

Query: 193 NINP----------------------------------DVVTYTSLIRGFCYANDWNEAK 218
            I P                                  DVV Y+++I G C   D   A+
Sbjct: 425 GIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAE 484

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
                M+D+G+ P+ VT+++++N    +G +  A R+L+ M   G  PD +V+++L+ G+
Sbjct: 485 EFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGY 544

Query: 279 CLTGRVNRAKELFVSMESN 297
              G   +  EL   M + 
Sbjct: 545 GAKGDTEKVLELIREMTAK 563



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 125/280 (44%), Gaps = 10/280 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN +   L K         +   +   G   +L T+N+LI    ++ +V     +
Sbjct: 323 PNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMEL 382

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  S   PD+ T++ LI G C   ++  A +L +K+R  G +P++  Y  L+  LC 
Sbjct: 383 MDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCE 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A N F+EM          CK D + YST+  G C+      A+E    M DE +
Sbjct: 443 QGMMEQARNFFDEMHKN-------CKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGL 495

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY+ LI  F  + D   A+ +  +M   G  P+V  F+ ++      G  ++   
Sbjct: 496 IPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLE 555

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           L+  M    +  D+ + +T+    CL    N  K L  S+
Sbjct: 556 LIREMTAKDIALDSKIISTIYT--CLVAN-NEGKALLQSV 592


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 176/338 (52%), Gaps = 10/338 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +   L      +    LF+ +  +G+ PD+YTY ILI+ FCK G +     +
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P  VT+T+LI       ++ +A  +F ++   GC+P+  TY  L++GLC+
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 405

Query: 135 TGHTIVALNLFEEMA----NGNGEFGVVCK------PDAITYSTITDGLCKEGFVDKAKE 184
            G+   A  ++ ++     + + +F   C+      P+ +TY  + DGLCK   VD A E
Sbjct: 406 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 465

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L   M      P+ + Y +LI GFC A   + A+ +F++M   G  P+V T+  +++ + 
Sbjct: 466 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 525

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K+G++D A ++L  M++    P+   Y  ++DG C  G   +A +L   ME  GC  +V 
Sbjct: 526 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 585

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +Y  LI+G  K  +I+ +L L+++M  KG  P  VTY 
Sbjct: 586 TYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYR 623



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 159/334 (47%), Gaps = 22/334 (6%)

Query: 26  CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP 85
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D  T+T LI   C    I +A  LF ++R+ GC P V TYT LI+   +      A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM---------------- 189
             M +        C+P+ +TY  + DGLCK G + KA E++ K+                
Sbjct: 382 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 435

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               + P+VVTY +L+ G C A+  + A  L   M+  G +PN + ++ +++  CK GK+
Sbjct: 436 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 495

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  +   M + G  P    Y +L+D     GR++ A ++   M  + C  +V +Y  +
Sbjct: 496 DSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAM 555

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+G C+  E E AL L S M  KG  P VVTY  
Sbjct: 556 IDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 589



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 166/363 (45%), Gaps = 29/363 (7%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I + M+    +P P   FN L       K Y     L  R+ + G  P    YNI I   
Sbjct: 164 IINMMMTEGCNPNPSL-FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 63  CKMGRV-SPGFV-----VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           C   ++ SP  +     + G +L +    + V   +  + LC   +  +A  L  ++   
Sbjct: 223 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 282

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G  PD  TY+ +I  LC       A  LF+EM        V   PD  TY+ + D  CK 
Sbjct: 283 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM------VGVTPDVYTYTILIDSFCKA 336

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +++A+ LF +M+    +P VVTYT+LI  +  A    +A  +F  M+D G +PN VT+
Sbjct: 337 GLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 396

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIG----------------VRPDASVYNTLMDGFCL 280
             +++ LCK G + +A  +   +I                   + P+   Y  L+DG C 
Sbjct: 397 GALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK 456

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             +V+ A EL  +M S+GC  +   Y  LI+G+CK  +I+ A  ++ +M   G  P+V T
Sbjct: 457 AHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHT 516

Query: 341 YNT 343
           Y +
Sbjct: 517 YTS 519



 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 161/343 (46%), Gaps = 24/343 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L     K K       +F R+   G  P+  TY  L++  CK G +S  F V
Sbjct: 356 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 415

Query: 75  LGRIL----------------RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
             +++                R    P+ VT+ +L+ GLC   ++  A  L   + + GC
Sbjct: 416 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGC 475

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           +P+   Y  LI+G C+ G    A  +F +M     + G +  P   TY+++ D + K+G 
Sbjct: 476 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMT----KCGYL--PSVHTYTSLIDRMFKDGR 529

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A ++  +M  ++  P+VVTYT++I G C   +  +A  L   M ++G  PNVVT+  
Sbjct: 530 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 589

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ L K GK+D +  L   M + G  P+   Y  L++  C  G +++A+ L   M+   
Sbjct: 590 LIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTY 649

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             + +  Y   I G+  +K    +L +  EM S G  P    Y
Sbjct: 650 WPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIAPVY 690



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 152/333 (45%), Gaps = 10/333 (3%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V ++  L   L K    D    L   + S G  P+   Y+ LI+ FCK G++  
Sbjct: 438 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDS 497

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              V  ++ +  + P   T+TSLI  +  + R+  A  + +++    C P+V TYT +I+
Sbjct: 498 AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMID 557

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLCR G +  AL L   M          C P+ +TY+ + DGL K G +D + +LF +M 
Sbjct: 558 GLCRIGESEKALKLLSLMEEKG------CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMS 611

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            +  +P+ VTY  LI   C A   ++A+ L  EM        +  +   +    K+    
Sbjct: 612 RKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS--FI 669

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES--NGCMRDVFSYGI 308
            +  +LE M   G  P A VY  L+D F   GR+  A EL   M    +    D   Y  
Sbjct: 670 ASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYAS 729

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           LI   C   ++E A  LYSEM  +G  P +  +
Sbjct: 730 LIQALCLASQVEEAFRLYSEMTRRGFVPELSVF 762



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 2/305 (0%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L +  ++D  +S   R+      P++ TY  L++ F K  ++     ++  ++     P+
Sbjct: 117 LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 176

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
              F SL+   C E     A  L  ++   GC P    Y   I  +C     + + +L +
Sbjct: 177 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQ-EKLPSPDLLD 235

Query: 147 EMANGNGE-FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
                 GE     C  + +  +     LC  G  DKA +L  +M  +   PD  TY+ +I
Sbjct: 236 LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVI 295

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
              C+A    +A  LF EM   GV P+V T+ ++++  CK G +++A  L E M  +G  
Sbjct: 296 TFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS 355

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           P    Y  L+  +    +V +A ++F  M   GC  +  +YG L++G CK   I  A  +
Sbjct: 356 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 415

Query: 326 YSEML 330
           Y++++
Sbjct: 416 YAKLI 420



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 155/364 (42%), Gaps = 38/364 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L+     D    + K ++  G   D +T     +  CK GR +     
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA--- 94

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  I R  F  D V  T +I GL   S   EA +   ++R   C P+V TY TL++G  +
Sbjct: 95  LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 154

Query: 135 TGH-----TIVAL----------NLFEEMANG--------------NGEFGVVCKPDAIT 165
                    I+ +          +LF  + +               N      C P  + 
Sbjct: 155 KKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVV 214

Query: 166 YSTITDGLCKE------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           Y+     +C +        +D A++++ +M   N   + V   +  R  C    +++A  
Sbjct: 215 YNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQ 274

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  EMM +G  P+  T++ ++  LC   K+++A  L + M  +GV PD   Y  L+D FC
Sbjct: 275 LIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFC 334

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G + +A+ LF  M S GC   V +Y  LI+ Y K K++  A  ++  M+  G RP  V
Sbjct: 335 KAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 394

Query: 340 TYNT 343
           TY  
Sbjct: 395 TYGA 398



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 138/342 (40%), Gaps = 50/342 (14%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           L   G  P   TYN L+      G+V  GF V   +  S F  D  T       LC E R
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
             +A  +  +   F  K D    T +I+GL    +   A++    M   +      C P+
Sbjct: 91  WADALDMIER-EDF--KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNS------CIPN 141

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +TY T+  G  K+  +   K +   M  E  NP+   + SL+  +C   D+  A  L  
Sbjct: 142 VVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLN 201

Query: 223 EMMDQGVQPNVVTFNVIMNELCKN------------------------------------ 246
            M   G  P  V +N+ +  +C                                      
Sbjct: 202 RMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFAR 261

Query: 247 -----GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
                GK D+A +L++ M++ G  PD S Y+ ++   C   +V +A  LF  M+  G   
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           DV++Y ILI+ +CK   IE A  L+ EM S G  PTVVTY  
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTA 363



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 142/323 (43%), Gaps = 42/323 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML     P  +  ++ L     K    D+   +F ++   G  P ++TY  LI+  
Sbjct: 466 LLDAMLSSGCEPNHIV-YDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRM 524

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K GR+     VL ++L+   TP+ VT+T++I GLC      +A  L + +   GC P+V
Sbjct: 525 FKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 584

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LI+GL + G   ++L+LF +M+         C P+ +TY  + + LC  G +DKA
Sbjct: 585 VTYTALIDGLGKAGKIDLSLDLFTQMSRKG------CSPNYVTYRVLINHLCAAGLLDKA 638

Query: 183 KELFLKMKD----------------------------ENIN-----PDVVTYTSLIRGFC 209
           + L  +MK                             E +      P    Y  LI  F 
Sbjct: 639 RLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFS 698

Query: 210 YANDWNEAKCLFIEMMD--QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            A     A  L  EMM+    V+ +   +  ++  LC   +++EA RL   M + G  P+
Sbjct: 699 KAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 758

Query: 268 ASVYNTLMDGFCLTGRVNRAKEL 290
            SV+  L+ G     + + A +L
Sbjct: 759 LSVFVCLIKGLVEVKKWDEALQL 781



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 6/215 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K    D  L LF +++  G  P+  TY +LIN  C  G +    ++
Sbjct: 582 PNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLL 641

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG + ++ +      +   I+G       + +  +  ++ ++G  P    Y  LI+   +
Sbjct: 642 LGEMKQTYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSK 699

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +A+ L +EM     E     K D   Y+++   LC    V++A  L+ +M     
Sbjct: 700 AGRLEIAMELHKEMM----EVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGF 755

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            P++  +  LI+G      W+EA  L   +  +GV
Sbjct: 756 VPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGV 790


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 176/338 (52%), Gaps = 10/338 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +   L      +    LF+ +  +G+ PD+YTY ILI+ FCK G +     +
Sbjct: 221 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 280

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P  VT+T+LI       ++ +A  +F ++   GC+P+  TY  L++GLC+
Sbjct: 281 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 340

Query: 135 TGHTIVALNLFEEMA----NGNGEFGVVCK------PDAITYSTITDGLCKEGFVDKAKE 184
            G+   A  ++ ++     + + +F   C+      P+ +TY  + DGLCK   VD A E
Sbjct: 341 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 400

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L   M      P+ + Y +LI GFC A   + A+ +F++M   G  P+V T+  +++ + 
Sbjct: 401 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 460

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K+G++D A ++L  M++    P+   Y  ++DG C  G   +A +L   ME  GC  +V 
Sbjct: 461 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 520

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +Y  LI+G  K  +I+ +L L+++M  KG  P  VTY 
Sbjct: 521 TYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYR 558



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 159/334 (47%), Gaps = 22/334 (6%)

Query: 26  CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP 85
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 197 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 256

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D  T+T LI   C    I +A  LF ++R+ GC P V TYT LI+   +      A ++F
Sbjct: 257 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 316

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM---------------- 189
             M +        C+P+ +TY  + DGLCK G + KA E++ K+                
Sbjct: 317 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 370

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               + P+VVTY +L+ G C A+  + A  L   M+  G +PN + ++ +++  CK GK+
Sbjct: 371 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 430

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  +   M + G  P    Y +L+D     GR++ A ++   M  + C  +V +Y  +
Sbjct: 431 DSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAM 490

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+G C+  E E AL L S M  KG  P VVTY  
Sbjct: 491 IDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 524



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 166/363 (45%), Gaps = 29/363 (7%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I + M+    +P P   FN L       K Y     L  R+ + G  P    YNI I   
Sbjct: 99  IINMMMTEGCNPNPSL-FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 157

Query: 63  CKMGRV-SPGFV-----VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           C   ++ SP  +     + G +L +    + V   +  + LC   +  +A  L  ++   
Sbjct: 158 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 217

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G  PD  TY+ +I  LC       A  LF+EM        V   PD  TY+ + D  CK 
Sbjct: 218 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM------VGVTPDVYTYTILIDSFCKA 271

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +++A+ LF +M+    +P VVTYT+LI  +  A    +A  +F  M+D G +PN VT+
Sbjct: 272 GLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 331

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIG----------------VRPDASVYNTLMDGFCL 280
             +++ LCK G + +A  +   +I                   + P+   Y  L+DG C 
Sbjct: 332 GALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK 391

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             +V+ A EL  +M S+GC  +   Y  LI+G+CK  +I+ A  ++ +M   G  P+V T
Sbjct: 392 AHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHT 451

Query: 341 YNT 343
           Y +
Sbjct: 452 YTS 454



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 161/343 (46%), Gaps = 24/343 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L     K K       +F R+   G  P+  TY  L++  CK G +S  F V
Sbjct: 291 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 350

Query: 75  LGRIL----------------RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
             +++                R    P+ VT+ +L+ GLC   ++  A  L   + + GC
Sbjct: 351 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGC 410

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           +P+   Y  LI+G C+ G    A  +F +M     + G +  P   TY+++ D + K+G 
Sbjct: 411 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMT----KCGYL--PSVHTYTSLIDRMFKDGR 464

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A ++  +M  ++  P+VVTYT++I G C   +  +A  L   M ++G  PNVVT+  
Sbjct: 465 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 524

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ L K GK+D +  L   M + G  P+   Y  L++  C  G +++A+ L   M+   
Sbjct: 525 LIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTY 584

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             + +  Y   I G+  +K    +L +  EM S G  P    Y
Sbjct: 585 WPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIAPVY 625



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 152/333 (45%), Gaps = 10/333 (3%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V ++  L   L K    D    L   + S G  P+   Y+ LI+ FCK G++  
Sbjct: 373 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDS 432

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              V  ++ +  + P   T+TSLI  +  + R+  A  + +++    C P+V TYT +I+
Sbjct: 433 AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMID 492

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLCR G +  AL L   M          C P+ +TY+ + DGL K G +D + +LF +M 
Sbjct: 493 GLCRIGESEKALKLLSLMEEKG------CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMS 546

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            +  +P+ VTY  LI   C A   ++A+ L  EM        +  +   +    K+    
Sbjct: 547 RKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS--FI 604

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES--NGCMRDVFSYGI 308
            +  +LE M   G  P A VY  L+D F   GR+  A EL   M    +    D   Y  
Sbjct: 605 ASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYAS 664

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           LI   C   ++E A  LYSEM  +G  P +  +
Sbjct: 665 LIQALCLASQVEEAFRLYSEMTRRGFVPELSVF 697



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 2/305 (0%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L +  ++D  +S   R+      P++ TY  L++ F K  ++     ++  ++     P+
Sbjct: 52  LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 111

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
              F SL+   C E     A  L  ++   GC P    Y   I  +C     + + +L +
Sbjct: 112 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQ-EKLPSPDLLD 170

Query: 147 EMANGNGE-FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
                 GE     C  + +  +     LC  G  DKA +L  +M  +   PD  TY+ +I
Sbjct: 171 LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVI 230

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
              C+A    +A  LF EM   GV P+V T+ ++++  CK G +++A  L E M  +G  
Sbjct: 231 TFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS 290

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           P    Y  L+  +    +V +A ++F  M   GC  +  +YG L++G CK   I  A  +
Sbjct: 291 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 350

Query: 326 YSEML 330
           Y++++
Sbjct: 351 YAKLI 355



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 145/336 (43%), Gaps = 38/336 (11%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           ++  G   D +T     +  CK GR +     L  I R  F  D V  T +I GL   S 
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADA---LDMIEREDFKLDTVLCTHMISGLMEASY 57

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH-----TIVAL----------NLFEE 147
             EA +   ++R   C P+V TY TL++G  +         I+ +          +LF  
Sbjct: 58  FDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNS 117

Query: 148 MANG--------------NGEFGVVCKPDAITYSTITDGLCKE------GFVDKAKELFL 187
           + +               N      C P  + Y+     +C +        +D A++++ 
Sbjct: 118 LVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYG 177

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M   N   + V   +  R  C    +++A  L  EMM +G  P+  T++ ++  LC   
Sbjct: 178 EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHAT 237

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+++A  L + M  +GV PD   Y  L+D FC  G + +A+ LF  M S GC   V +Y 
Sbjct: 238 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 297

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LI+ Y K K++  A  ++  M+  G RP  VTY  
Sbjct: 298 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGA 333



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 142/323 (43%), Gaps = 42/323 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML     P  +  ++ L     K    D+   +F ++   G  P ++TY  LI+  
Sbjct: 401 LLDAMLSSGCEPNHIV-YDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRM 459

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K GR+     VL ++L+   TP+ VT+T++I GLC      +A  L + +   GC P+V
Sbjct: 460 FKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 519

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LI+GL + G   ++L+LF +M+         C P+ +TY  + + LC  G +DKA
Sbjct: 520 VTYTALIDGLGKAGKIDLSLDLFTQMSRKG------CSPNYVTYRVLINHLCAAGLLDKA 573

Query: 183 KELFLKMKD----------------------------ENIN-----PDVVTYTSLIRGFC 209
           + L  +MK                             E +      P    Y  LI  F 
Sbjct: 574 RLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFS 633

Query: 210 YANDWNEAKCLFIEMMD--QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            A     A  L  EMM+    V+ +   +  ++  LC   +++EA RL   M + G  P+
Sbjct: 634 KAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 693

Query: 268 ASVYNTLMDGFCLTGRVNRAKEL 290
            SV+  L+ G     + + A +L
Sbjct: 694 LSVFVCLIKGLVEVKKWDEALQL 716



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 6/215 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K    D  L LF +++  G  P+  TY +LIN  C  G +    ++
Sbjct: 517 PNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLL 576

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG + ++ +      +   I+G       + +  +  ++ ++G  P    Y  LI+   +
Sbjct: 577 LGEMKQTYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSK 634

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +A+ L +EM     E     K D   Y+++   LC    V++A  L+ +M     
Sbjct: 635 AGRLEIAMELHKEMM----EVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGF 690

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            P++  +  LI+G      W+EA  L   +  +GV
Sbjct: 691 VPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGV 725


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 184/367 (50%), Gaps = 44/367 (11%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           +HP      S  IL  C  +NK  D    +F  +   G   +  +Y  LI+  C+ GR++
Sbjct: 225 LHPDTFTYTSL-ILGHC--RNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRIN 281

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +   +      P   T+T LI  L    R +EA  LF +++  GC+P+V TYT LI
Sbjct: 282 EALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLI 341

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD--------- 180
           +GLC+      A  +  EM+    E G++  P  +TY+ + DG CKEG +D         
Sbjct: 342 DGLCKENKMDEARKMLSEMS----EKGLI--PSVVTYNALIDGYCKEGMIDDAFEILDLM 395

Query: 181 --------------------------KAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
                                     KA  L  KM +  ++P ++TY SLI G C  ND 
Sbjct: 396 ESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDL 455

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             A  L   M + G+ P+  T++V ++ LCK G+++EA  L + +   GV+ +  +Y  L
Sbjct: 456 ESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTAL 515

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DG+C  G+++ A  L   M ++ C+ + ++Y +LI G CK K+++ A SL ++ML+ G+
Sbjct: 516 IDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV 575

Query: 335 RPTVVTY 341
           +PTVVTY
Sbjct: 576 KPTVVTY 582



 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 172/311 (55%), Gaps = 9/311 (2%)

Query: 36  VLSLFKRLNSIGLF---PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           VL +F+++N+ G F   P L  YN ++    K   +     V   +L +  +P+  TF +
Sbjct: 140 VLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNA 199

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           ++ G C    ++EA    +K+   G  PD FTYT+LI G CR      A  +F  M    
Sbjct: 200 MVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG 259

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                 C+ + ++Y+ +  GLC+ G +++A +LF  M ++N  P V TYT LI     + 
Sbjct: 260 ------CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSG 313

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              EA  LF EM ++G +PNV T+ V+++ LCK  KMDEA ++L  M + G+ P    YN
Sbjct: 314 RKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYN 373

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+DG+C  G ++ A E+   MESN C  +  +Y  LI G CK +++  A++L ++ML +
Sbjct: 374 ALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLER 433

Query: 333 GIRPTVVTYNT 343
            + P+++TYN+
Sbjct: 434 KLSPSLITYNS 444



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 163/327 (49%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   L K    D    +   ++  GL P + TYN LI+ +CK G +   F +
Sbjct: 332 PNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P+  T+  LI GLC + ++ +A AL  K+      P + TY +LI+G C+
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L   M     E G+V  PD  TYS   D LCKEG V++A  LF  +K + +
Sbjct: 452 VNDLESAYRLLSLM----NENGLV--PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGV 505

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + V YT+LI G+C     + A  L   M++    PN  T+NV++  LCK  KM EAS 
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  M+ +GV+P    Y  L+      G  + A ++F  M S G   DV +Y   ++ Y 
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYF 625

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
               +E    + ++M  +GI P +VTY
Sbjct: 626 SQGMLEEVDDVIAKMNEEGILPDLVTY 652



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 173/407 (42%), Gaps = 71/407 (17%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F I D M   +   P   ++N L   L K +     ++L  ++    L P L TYN LI+
Sbjct: 389 FEILDLM-ESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIH 447

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+  +   + +L  +  +   PD  T++  I  LC E R+ EA  LF  ++A G K 
Sbjct: 448 GQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKA 507

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +   YT LI+G C+ G   VA +L E M N        C P++ TY+ + +GLCKE  + 
Sbjct: 508 NEVIYTALIDGYCKVGKIDVAYSLLERMLND------ACLPNSYTYNVLIEGLCKEKKMK 561

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  L  KM    + P VVTYT LI        ++ A  +F  M+  G QP+V T+   +
Sbjct: 562 EASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL 621

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC---LTGRV------------- 284
           +     G ++E   ++  M + G+ PD   Y  L+DG+    LT R              
Sbjct: 622 HAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCK 681

Query: 285 ----------------NRAKE--------------------------------LFVSMES 296
                           NR KE                                LF  M  
Sbjct: 682 PSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVE 741

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +GC  DV  YG LI G+C+ + +E A  L   M  +G+ P+   YN+
Sbjct: 742 HGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNS 788



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 162/356 (45%), Gaps = 35/356 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++++    L K    +   +LF  + + G+  +   Y  LI+ +CK+G++   + +
Sbjct: 472 PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSL 531

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+L     P++ T+  LI+GLC E ++ EA++L  K+   G KP V TYT LI  + +
Sbjct: 532 LERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLK 591

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL +F  M +      +  +PD  TY+        +G +++  ++  KM +E I
Sbjct: 592 DGAFDHALKVFNHMVS------LGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGI 645

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE--- 251
            PD+VTYT LI G+      + A      M+D G +P++   ++++  L    +M E   
Sbjct: 646 LPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRS 705

Query: 252 --------------------------ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
                                     A +L E M++ G   D S+Y  L+ GFC   R+ 
Sbjct: 706 EIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLE 765

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            A+ L   M+  G       Y  L++  CK      A+ L   M+  G+ P + +Y
Sbjct: 766 EAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESY 821



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 142/330 (43%), Gaps = 35/330 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N+L   L K K      SL  ++ ++G+ P + TY ILI    K G       V
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++   + PD  T+T+ +    ++  + E   +  K+   G  PD+ TYT LI+G  R
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK----------- 183
            G T  A +  + M +        CKP     S +   L  E  + + +           
Sbjct: 662 LGLTHRAFDFLKCMVDTG------CKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNV 715

Query: 184 ------------------ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
                             +LF KM +     DV  Y +LI GFC      EA+ L   M 
Sbjct: 716 NSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMK 775

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++G+ P+   +N +++  CK G   EA RL++ M++ G+ P    Y  L+ G  + G   
Sbjct: 776 ERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNE 835

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCK 315
           +AK +F  + S G   D  ++ +LI+G  K
Sbjct: 836 KAKAVFHGLLSCGYNYDEVAWKVLIDGLLK 865



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 8/173 (4%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           K   Y+  L LF+++   G   D+  Y  LI  FC+  R+     ++  +     +P   
Sbjct: 725 KTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSED 784

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
            + SL+   C      EA  L   +   G  P + +Y  L+ GL   G    A  +F  +
Sbjct: 785 IYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGL 844

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL--FLKMKDENINPDVV 199
            +    +      D + +  + DGL K   VD+  EL   ++ KD     D+ 
Sbjct: 845 LSCGYNY------DEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQADIA 891


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 174/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K +++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 86  LTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 145

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +    +V   I +    P  V++ +L+ G      + E   L + +RA G +PDV+TY+
Sbjct: 146 DIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYS 205

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 206 VLINGLCKESXMDDANELFDEMLVK----GLV--PNXVTFTTLIDGHCKNGRVDLAMEIY 259

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  + + PD++TY +L+ G C   D N+A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 260 KQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKE 319

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 320 GDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTY 379

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P VVTYN
Sbjct: 380 TMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYN 415



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 161/299 (53%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+        +F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 128 PASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 187

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES + +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 188 LKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHC 247

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M            PD ITY+T+  GLCK+G +++A  L  +M  + 
Sbjct: 248 KNGRVDLAMEIYKQM------LSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKG 301

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 302 LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAE 361

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +L   M+ NG +  V +Y +L+NG
Sbjct: 362 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMNG 420



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 95/170 (55%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A  +F  +    + P VV+Y +L+ G+    D +E   L   M   GVQP+V
Sbjct: 142 CKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDV 201

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK   MD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 202 YTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQ 261

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  L+ G CK  ++  A  L  EM  KG++P   TY T
Sbjct: 262 MLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTT 311



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 92/184 (50%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   ++  +     T   ++        +     
Sbjct: 58  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWG 117

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E+++ G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+ 
Sbjct: 118 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYI 177

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L  +M ++G   DV++Y +LING CK   ++ A  L+ EML KG+ P  V
Sbjct: 178 RLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXV 237

Query: 340 TYNT 343
           T+ T
Sbjct: 238 TFTT 241


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 174/325 (53%), Gaps = 8/325 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +N L   L K K      ++F  + S   F PD+ +Y+ILI+ FCK+  +     +  ++
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P+  T+ + + GL  + RI +A  ++ ++ A GC PDV TY+TLI+G       
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LFE M +        C+P+A+TY+ +  GLCKE   D+A ELF KM +   +PD 
Sbjct: 569 DQAHELFETMISRG------CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDR 622

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTYT+L+ GFC      +A  +F EM+ +G  P+VV +N ++    + GK  EA +L ++
Sbjct: 623 VTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQV 682

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYGILINGYCKNK 317
           M+    +PD   +N ++DG     R++ A E+F  ME + GC  D+ +Y  LI G C  +
Sbjct: 683 MVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQ 742

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYN 342
            +  A+ ++ E+    + P    +N
Sbjct: 743 RLSEAMKVFKEIDRLKLSPDPHAFN 767



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 148/291 (50%), Gaps = 8/291 (2%)

Query: 55  YNILINCFCKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           YN L+N  CK  +V   F +   ++    F PD V+++ LI G C    +  A  L+ ++
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
               C P+V TY   +NGL R G    A  ++EEM          C PD ITYST+  G 
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAG------CSPDVITYSTLIHGF 562

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
                 D+A ELF  M      P+ VTY  L+ G C  +  +EA  LF +M+++G  P+ 
Sbjct: 563 SLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDR 622

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           VT+  ++   C  GK+++A  + + M+  G  PD   YN L+ GF   G+   AK+LF  
Sbjct: 623 VTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQV 682

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM-LSKGIRPTVVTYNT 343
           M S  C  D  S+ I+I+G  K K ++ A+ ++  M    G  P +VTYN+
Sbjct: 683 MVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNS 733



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 174/321 (54%), Gaps = 13/321 (4%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K    D+ LSL + +   G  PD+ T+++LIN  CK  ++      L  + R   +  
Sbjct: 384 LCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRS 443

Query: 87  AVT--FTSLIKGLCAESRIMEAAALFTKL---RAFGCKPDVFTYTTLINGLCRTGHTIVA 141
           +    + SL+  LC   ++ +A A+F+ +   R+F   PDV +Y+ LI+G C+      A
Sbjct: 444 SSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSF--VPDVVSYSILIDGFCKIDELGRA 501

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
             L+++M + N      C P+  TY+   +GL ++G +  A+ ++ +M     +PDV+TY
Sbjct: 502 EKLYKQMIDLN------CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITY 555

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           ++LI GF  A   ++A  LF  M+ +G +PN VT+N +++ LCK  K DEA  L   M++
Sbjct: 556 STLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE 615

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G  PD   Y TL+ GFC  G++ +A E+F  M S G   DV +Y  L+ G+ +  +   
Sbjct: 616 RGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGE 675

Query: 322 ALSLYSEMLSKGIRPTVVTYN 342
           A  L+  M+S+  +P  V++N
Sbjct: 676 AKQLFQVMVSRQCKPDTVSHN 696



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 163/332 (49%), Gaps = 9/332 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S  PV  +++L   L ++   D        +    + P   T + +I   CK GRV    
Sbjct: 337 SSQPV--YDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSAL 394

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLIN 130
            +L  +++  + PD  T + LI  LC   +I EA      +  +        F+Y +L+N
Sbjct: 395 SLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLN 454

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
            LC+      A  +F  M +   E   V  PD ++YS + DG CK   + +A++L+ +M 
Sbjct: 455 SLCKAKKVHQAFAIFSTMVS---ERSFV--PDVVSYSILIDGFCKIDELGRAEKLYKQMI 509

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           D N  P+V TY + + G        +A+ ++ EM+  G  P+V+T++ +++      K D
Sbjct: 510 DLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHD 569

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           +A  L E MI  G RP+A  YN L+ G C   + + A ELF  M   GC  D  +Y  L+
Sbjct: 570 QAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLL 629

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G+C   +IE A+ ++ EM+SKG  P VV YN
Sbjct: 630 YGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYN 661



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 161/313 (51%), Gaps = 7/313 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F IF  M+      P V S++IL     K         L+K++  +   P++ TYN  +N
Sbjct: 466 FAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLN 525

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              + GR++    V   ++ +  +PD +T+++LI G     +  +A  LF  + + GC+P
Sbjct: 526 GLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRP 585

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  TY  L++GLC+      A  LF +M          C PD +TY+T+  G C  G ++
Sbjct: 586 NAVTYNCLLHGLCKESKPDEAHELFRKMVERG------CDPDRVTYTTLLYGFCNVGKIE 639

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A E+F +M  +  +PDVV Y  L++GF  A    EAK LF  M+ +  +P+ V+ N+++
Sbjct: 640 QAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMI 699

Query: 241 NELCKNGKMDEASRLLELMIQ-IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           + L K  ++D+A  + E M Q  G  PD   YN+L+ G C   R++ A ++F  ++    
Sbjct: 700 DGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKL 759

Query: 300 MRDVFSYGILING 312
             D  ++ +L+  
Sbjct: 760 SPDPHAFNVLLEA 772



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 136/300 (45%), Gaps = 42/300 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N     L +         +++ + + G  PD+ TY+ LI+ F    +      +
Sbjct: 515 PNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHEL 574

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+AVT+  L+ GLC ES+  EA  LF K+   GC PD  TYTTL+ G C 
Sbjct: 575 FETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCN 634

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----------------------------CKPDAIT 165
            G    A+ +F+EM +   +  VV                             CKPD ++
Sbjct: 635 VGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVS 694

Query: 166 YSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           ++ + DGL K   +D A E+F +M +D   +PD+VTY SLI G C     +EA  +F E+
Sbjct: 695 HNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 754

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR-PDASVYNTLMDGFCLTGR 283
               + P+   FNV++ E  K G          ++ Q  +R  D   +N LM+     G 
Sbjct: 755 DRLKLSPDPHAFNVLL-EAIKCG----------IVYQFEIRFKDPPAFNVLMEAMHAAGH 803



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 153/357 (42%), Gaps = 32/357 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++ +L       ++ D  +  F  +   G  P    Y  +  C    G+      V GR 
Sbjct: 166 TYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRD 225

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L      + +   +L+     + + +EA+ LF  +   GCKPD   Y+ ++   C+  + 
Sbjct: 226 LEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENL 285

Query: 139 IVALNLFEEMANGNGE----------FGVVCKPDAI-------------------TYSTI 169
             A  LF EMA  +               +CK   I                    Y  +
Sbjct: 286 DEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDML 345

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
              L + G +DKA+E  L++   NI P   T  S+I+  C A   + A  L   M+ +G 
Sbjct: 346 IRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGY 405

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQ--IGVRPDASVYNTLMDGFCLTGRVNRA 287
            P++ T ++++NELCK  K+ EA   L+ M +           YN+L++  C   +V++A
Sbjct: 406 CPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQA 465

Query: 288 KELFVSMESNGC-MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +F +M S    + DV SY ILI+G+CK  E+  A  LY +M+     P V TYN 
Sbjct: 466 FAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNA 522



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 87/177 (49%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           K D  TY+ + D L +   + +A ++F KM  + + P+  TY  L++  CY  + +EA  
Sbjct: 126 KHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVR 185

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            F EM+D+G +P+   +  +   L   GK  E SR+    ++  V  +  +   L+  F 
Sbjct: 186 FFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFV 245

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           +  +   A +LF +M  +GC  D   Y  ++  +CK + ++ A  L+ EM  +   P
Sbjct: 246 IQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAP 302



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           EA   F  L+A   K DVFTY  L++ L R      A  +FE+M       GVV  P+  
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQ----GVV--PNGF 165

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY+ +    C E   D+A   F +M D+   P    Y  +           E   +F   
Sbjct: 166 TYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRD 225

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +++ V   ++    ++       K  EAS+L   M++ G +PDA++Y+ ++   C    +
Sbjct: 226 LEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENL 285

Query: 285 NRAKELFVSM--ESNGCMRDVFSYGILINGYCKNKEIEGALS 324
           + A +LF+ M  ES   + +V ++   ++G CK+ +IE A  
Sbjct: 286 DEAFKLFLEMAVESKAPLNNV-AWTAFLSGLCKSGKIEQAFE 326



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 4/189 (2%)

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKEL--FLKMKDENINPDVVTYTSLIRGFCYANDW 214
           VV K D  +    T G   +   D  + L  F  ++  N   DV TY  L+       D 
Sbjct: 86  VVKKWDGKSSCRETVGAVIKHLRDGGEALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDL 145

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            +A  +F +M+ QGV PN  T+ V++   C     DEA R    M+  G +P +++Y  +
Sbjct: 146 KQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKV 205

Query: 275 MDGFCLTGRVNRAKELF-VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
            +    TG+      +F   +E    +  +    +L+N   ++K IE A  L+  M+  G
Sbjct: 206 TECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIE-ASKLFRAMVKSG 264

Query: 334 IRPTVVTYN 342
            +P    Y+
Sbjct: 265 CKPDATIYS 273



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+      P V ++N L     +         LF+ + S    PD  ++NI+I+  
Sbjct: 644 VFDEMVS-KGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGL 702

Query: 63  CKMGRVSPGFVVLGRILRS--CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            K  R+     V  R+ +   C +PD VT+ SLI GLC E R+ EA  +F ++      P
Sbjct: 703 SKAKRLDDAVEVFERMEQDHGC-SPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSP 761

Query: 121 DVFTYTTLINGL 132
           D   +  L+  +
Sbjct: 762 DPHAFNVLLEAI 773


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 173/330 (52%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N L    ++  ++   L LF  L S  L P + TYN LI+  C+ G +     +
Sbjct: 345 PDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGM 404

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    PD VTFT L++G C    +  A  LF ++ + G KPD   YTT I G  +
Sbjct: 405 KDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELK 464

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G+   A  + EEM A G         PD ITY+ + +GLCK G  D A EL  KM+ E 
Sbjct: 465 LGNPSKAFGMKEEMKAEG-------FPPDLITYNVLINGLCKLGNFDDANELVQKMRLEG 517

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I PD VTYTS+I     +    +A+ +F +M+ +G+ P+VVT+ V+++     G++D A 
Sbjct: 518 IVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAK 577

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +  + M   GV P+   YN L+ G C    ++ A  LF  MES G   + ++Y ILIN  
Sbjct: 578 KYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINEN 637

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +  + AL LY +ML + I+P   T++ 
Sbjct: 638 SNLQYWQDALKLYKDMLDREIKPDSCTHSA 667



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 182/372 (48%), Gaps = 41/372 (11%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK-- 64
           ++RM    P   S+N+L   L+    +D    L ++++ +GL    +TYN LI  FCK  
Sbjct: 232 VMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKE 291

Query: 65  ---------------------------------MGRVSPGFVVLGRILRSCFTPDAVTFT 91
                                            +GRVS     L  ++     PD V++ 
Sbjct: 292 MFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYN 351

Query: 92  SLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151
           +LI G        EA  LF++LR+    P V TY TLI+G CRTG+  +A  + ++M   
Sbjct: 352 TLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKH 411

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                 +C PD +T++ +  G C+ G +  AKELF +M    + PD + YT+ I G    
Sbjct: 412 G-----LC-PDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKL 465

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            + ++A  +  EM  +G  P+++T+NV++N LCK G  D+A+ L++ M   G+ PD   Y
Sbjct: 466 GNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTY 525

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
            +++    ++G + +A+E+F  M   G    V +Y +LI+ Y     ++ A   + EM  
Sbjct: 526 TSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQD 585

Query: 332 KGIRPTVVTYNT 343
           KG+ P V+TYN 
Sbjct: 586 KGVSPNVITYNA 597



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 157/330 (47%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N +   L      + V  ++  +    + P + T+N +++  CK G V     V
Sbjct: 170 PDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEV 229

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ V++  L+ GL  +     A  L  ++   G K    TY  LI G C+
Sbjct: 230 LDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCK 289

Query: 135 TGHTIVALNLFEEMANGNGE-FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                    +FEE  +   E  G    P  +TY+TI   LC+ G V  A+     M +E+
Sbjct: 290 K-------EMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNED 342

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD+V+Y +LI G+    ++ EA  LF E+  + + P+VVT+N +++  C+ G +D A 
Sbjct: 343 LMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAK 402

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + + MI+ G+ PD   +  L+ GFC  G +  AKELF  M S G   D  +Y   I G 
Sbjct: 403 GMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGE 462

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K      A  +  EM ++G  P ++TYN 
Sbjct: 463 LKLGNPSKAFGMKEEMKAEGFPPDLITYNV 492



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 157/329 (47%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN +     K       + +   +   G  P+  +YN+L+N     G       +
Sbjct: 205 PTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKEL 264

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++        A T+  LI+G C +    EA  L  ++   G  P V TY T++  LCR
Sbjct: 265 IEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCR 324

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A    + M N +        PD ++Y+T+  G  + G   +A  LF +++ +N+
Sbjct: 325 LGRVSDARRYLDVMVNED------LMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNL 378

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VVTY +LI G C   + + AK +  +M+  G+ P+VVTF +++   C+ G +  A  
Sbjct: 379 VPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKE 438

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+  G++PD   Y T + G    G  ++A  +   M++ G   D+ +Y +LING C
Sbjct: 439 LFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLC 498

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K    + A  L  +M  +GI P  VTY +
Sbjct: 499 KLGNFDDANELVQKMRLEGIVPDHVTYTS 527



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 147/286 (51%), Gaps = 6/286 (2%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
           ++LI  F K   +    +V  +++ +   PD      ++K L  +S + E   +++ +  
Sbjct: 141 DLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIK 200

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
              +P + T+ T+++  C+ G    A+ + + M      FG  C P+ ++Y+ + +GL  
Sbjct: 201 CQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRM----FG--CDPNDVSYNVLVNGLSG 254

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           +G  D+AKEL  +M    +     TY  LIRGFC    + EA  L  EM+ +G  P VVT
Sbjct: 255 KGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVT 314

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N IM  LC+ G++ +A R L++M+   + PD   YNTL+ G+   G    A  LF  + 
Sbjct: 315 YNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELR 374

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           S   +  V +Y  LI+G C+   ++ A  +  +M+  G+ P VVT+
Sbjct: 375 SKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTF 420



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 125/261 (47%), Gaps = 6/261 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F IL     +  +      LF  + S GL PD   Y   I    K+G  S  F +
Sbjct: 415 PDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGM 474

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +    F PD +T+  LI GLC      +A  L  K+R  G  PD  TYT++I+    
Sbjct: 475 KEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLI 534

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  +F +M            P  +TY+ +       G +D AK+ F +M+D+ +
Sbjct: 535 SGLLRKAEEVFSDMLKKG------IHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGV 588

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+V+TY +LI G C  N  + A  LF EM  +GV PN  T+ +++NE        +A +
Sbjct: 589 SPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALK 648

Query: 255 LLELMIQIGVRPDASVYNTLM 275
           L + M+   ++PD+  ++ LM
Sbjct: 649 LYKDMLDREIKPDSCTHSALM 669



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 125/260 (48%), Gaps = 7/260 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ML     P  +     + G L K  +      + + + + G  PDL TYN+LIN  
Sbjct: 439 LFDEMLSRGLKPDCIAYTTRIVGEL-KLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGL 497

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+G       ++ ++      PD VT+TS+I        + +A  +F+ +   G  P V
Sbjct: 498 CKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSV 557

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LI+     G    A   F+EM +          P+ ITY+ +  GLCKE  +D A
Sbjct: 558 VTYTVLIHSYAVRGRLDFAKKYFDEMQDKG------VSPNVITYNALIYGLCKENMMDVA 611

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M+ + ++P+  TYT LI        W +A  L+ +M+D+ ++P+  T + +M  
Sbjct: 612 YNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKH 671

Query: 243 LCKNGKMDEASRLLELMIQI 262
           L K+ K+    RL  L + I
Sbjct: 672 LSKDYKLLAVLRLENLPLAI 691



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 90/170 (52%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
            K+  ++K   +F KM +  + PDV     +++     +  NE + ++  M+   ++P +
Sbjct: 148 AKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTI 207

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           VTFN +M+  CK G++  A  +L++M   G  P+   YN L++G    G  +RAKEL   
Sbjct: 208 VTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQ 267

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M   G      +Y  LI G+CK +  E A  L  EML +G  PTVVTYNT
Sbjct: 268 MSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNT 317


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 176/338 (52%), Gaps = 7/338 (2%)

Query: 7   MLRMHPSPPPVC-SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           M R   +PPP   S+N++   L ++      L +F  +  +G+ P+  TYN +I+   K 
Sbjct: 5   MGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKG 64

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G +  GF +  ++L     P+ VT+  L+ GLC   R+ E   L  ++ +    PD FTY
Sbjct: 65  GDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTY 124

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           + L +GL RTG +   L+LF E        G      A T S + +GLCK+G V KA+++
Sbjct: 125 SILFDGLTRTGESRTMLSLFAESLKKGVMLG------AYTCSILLNGLCKDGKVAKAEQV 178

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
              +    + P  V Y +LI G+C   D   A C+F +M  + ++P+ +T+N ++N LCK
Sbjct: 179 LEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCK 238

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
              + +A  L+  M + GV P    +NTL+D +   G++ +   +   M+  G   DV S
Sbjct: 239 LEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVIS 298

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G ++  +CKN +I  A+++  +M+ K + P    YN+
Sbjct: 299 FGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 336



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 181/344 (52%), Gaps = 9/344 (2%)

Query: 1   FCIFDYMLRMHPSPPP-VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           F + D ML  H  P P + ++N+L   L +    D    L   + S  +FPD +TY+IL 
Sbjct: 71  FRLRDQML--HDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILF 128

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +   + G       +    L+      A T + L+ GLC + ++ +A  +   L   G  
Sbjct: 129 DGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLV 188

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P    Y TLING C+      A  +FE+M + +       +PD ITY+ + +GLCK   V
Sbjct: 189 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH------IRPDHITYNALINGLCKLEMV 242

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            KA++L ++M+   ++P V T+ +LI  +  A    +   +  +M  +G++ +V++F  +
Sbjct: 243 TKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSV 302

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   CKNGK+ EA  +L+ MI   V P+A VYN+++D +  +G   +A  L   M+++G 
Sbjct: 303 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 362

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              + +Y +L+ G C++ +I+ A  L   + ++G+RP VV+YNT
Sbjct: 363 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNT 406



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 165/360 (45%), Gaps = 29/360 (8%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   +++ILF  L +     T+LSLF      G+    YT +IL+N  CK G+V+ 
Sbjct: 115 HSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAK 174

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              VL  ++ +   P  V + +LI G C    +  A  +F ++++   +PD  TY  LIN
Sbjct: 175 AEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 234

Query: 131 GLCRTGHTIVALNLFEEMA---------------NGNGEFGVV--------------CKP 161
           GLC+      A +L  EM                +  G  G +               K 
Sbjct: 235 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 294

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           D I++ ++    CK G + +A  +   M  +++ P+   Y S+I  +  + D  +A  L 
Sbjct: 295 DVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLV 354

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +M + GV  ++VT+N+++  LC++ ++DEA  L+  +   G+RPD   YNT++   C  
Sbjct: 355 EKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNK 414

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G  ++A EL   M   G    + +Y  L++       +     LY +ML K + P+   Y
Sbjct: 415 GDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIY 474



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 158/320 (49%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N L     + +       +F+++ S  + PD  TYN LIN  CK+  V+    +
Sbjct: 189 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL 248

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + +S   P   TF +LI       ++ +   + + ++  G K DV ++ +++   C+
Sbjct: 249 VMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCK 308

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ + ++M   +        P+A  Y++I D   + G  ++A  L  KMK+  +
Sbjct: 309 NGKIPEAVAILDDMIYKD------VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 362

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +  +VTY  L++G C ++  +EA+ L   + +QG++P+VV++N I++  C  G  D+A  
Sbjct: 363 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 422

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G+RP    Y+TL+      GRV+  + L+  M           YGI+++ Y 
Sbjct: 423 LLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYV 482

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           + +      SL  EM  KGI
Sbjct: 483 RCENDSKVASLKKEMSEKGI 502



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 144/302 (47%), Gaps = 7/302 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           FCIF+ M   H  P  + ++N L   L K +       L   +   G+ P + T+N LI+
Sbjct: 211 FCIFEQMKSRHIRPDHI-TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLID 269

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +   G++   F VL  + +     D ++F S++K  C   +I EA A+   +      P
Sbjct: 270 AYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAP 329

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +   Y ++I+    +G T  A  L E+M N      +V      TY+ +  GLC+   +D
Sbjct: 330 NAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIV------TYNLLLKGLCRSSQID 383

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A+EL   ++++ + PDVV+Y ++I   C   D ++A  L  EM   G++P + T++ ++
Sbjct: 384 EAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLV 443

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L   G++ +   L + M+   V P +S+Y  ++D +      ++   L   M   G  
Sbjct: 444 SALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 503

Query: 301 RD 302
            D
Sbjct: 504 FD 505


>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 408

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 168/348 (48%), Gaps = 44/348 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF------------ 62
           PP+  F  +   LA +  Y   LS  ++L+  G+ PDL+TYN+LINCF            
Sbjct: 61  PPISQFGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFSQLGHTHFLDRV 120

Query: 63  ---------CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
                    CK+G       +L  +       D V +T++I GLC +  + +A  L+T++
Sbjct: 121 SYETLINGLCKVGETRAALRLLKEVNEKIVQYDVVMYTAIINGLCKDKLVDDAFDLYTEM 180

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
            A    PDVFTY  +I G C  G    A+ LF +M   N E       D  T++T+    
Sbjct: 181 VAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVE------ADEYTFNTLVSAF 234

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CKEG V + K +   M  E + PD++TY SL+ G+C   + ++AK +F  M+ +GV  NV
Sbjct: 235 CKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRGVTANV 294

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T N+     CK                  + PD   Y++L+DGFC +GR+ +A EL   
Sbjct: 295 RTMNLFQEMHCKE-----------------IIPDTIAYSSLIDGFCKSGRIPQALELVDE 337

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           M   G   ++ +Y  ++   CK   +E  ++L  ++  KGI+P   TY
Sbjct: 338 MHDRGQPPNIITYNSILYALCKIHHVEKTIALLRKIKVKGIQPDAYTY 385



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 152/308 (49%), Gaps = 45/308 (14%)

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT-------- 126
             R+     TP    F  ++  L   +R   A +   KL   G KPD+FTY         
Sbjct: 51  FNRLTNQIPTPPISQFGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFSQ 110

Query: 127 -------------TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
                        TLINGLC+ G T  AL L +E+         + + D + Y+ I +GL
Sbjct: 111 LGHTHFLDRVSYETLINGLCKVGETRAALRLLKEVNEK------IVQYDVVMYTAIINGL 164

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+  VD A +L+ +M  + ++PDV TY ++I GFC      +A  LF +M  + V+ + 
Sbjct: 165 CKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEADE 224

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            TFN +++  CK G + E   ++ +M++ GV+PD   YN+LMDG+CL   V++AK +F +
Sbjct: 225 YTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNT 284

Query: 294 MESNGC------------------MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           M   G                   + D  +Y  LI+G+CK+  I  AL L  EM  +G  
Sbjct: 285 MVQRGVTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQP 344

Query: 336 PTVVTYNT 343
           P ++TYN+
Sbjct: 345 PNIITYNS 352


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 184/367 (50%), Gaps = 44/367 (11%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           +HP      S  IL  C  +NK  D    +F  +   G   +  +Y  LI+  C+ GR++
Sbjct: 225 LHPDTFTYTSL-ILGHC--RNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRIN 281

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +   +      P   T+T LI  L    R +EA  LF +++  GC+P+V TYT LI
Sbjct: 282 EALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLI 341

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD--------- 180
           +GLC+      A  +  EM+    E G++  P  +TY+ + DG CKEG +D         
Sbjct: 342 DGLCKENKMDEARKMLSEMS----EKGLI--PSVVTYNALIDGYCKEGMIDDAFEILDLM 395

Query: 181 --------------------------KAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
                                     KA  L  KM +  ++P ++TY SLI G C  ND 
Sbjct: 396 ESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDL 455

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             A  L   M + G+ P+  T++V ++ LCK G+++EA  L + +   GV+ +  +Y  L
Sbjct: 456 ESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTAL 515

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DG+C  G+++ A  L   M ++ C+ + ++Y +LI G CK K+++ A SL ++ML+ G+
Sbjct: 516 IDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV 575

Query: 335 RPTVVTY 341
           +PTVVTY
Sbjct: 576 KPTVVTY 582



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 172/311 (55%), Gaps = 9/311 (2%)

Query: 36  VLSLFKRLNSIGLF---PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           VL +F+++N+ G F   P L  YN ++    K   +     V   +L +  +P+  TF +
Sbjct: 140 VLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNA 199

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           ++ G C    ++EA    +K+   G  PD FTYT+LI G CR      A  +F  M    
Sbjct: 200 MVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG 259

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                 C+ + ++Y+ +  GLC+ G +++A +LF  M ++N  P V TYT LI     + 
Sbjct: 260 ------CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSG 313

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              EA  LF EM ++G +PNV T+ V+++ LCK  KMDEA ++L  M + G+ P    YN
Sbjct: 314 RKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYN 373

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+DG+C  G ++ A E+   MESN C  +  +Y  LI G CK +++  A++L ++ML +
Sbjct: 374 ALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLER 433

Query: 333 GIRPTVVTYNT 343
            + P+++TYN+
Sbjct: 434 KLSPSLITYNS 444



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 163/327 (49%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   L K    D    +   ++  GL P + TYN LI+ +CK G +   F +
Sbjct: 332 PNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P+  T+  LI GLC + ++ +A AL  K+      P + TY +LI+G C+
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L   M     E G+V  PD  TYS   D LCKEG V++A  LF  +K + +
Sbjct: 452 VNDLESAYRLLSLM----NENGLV--PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGV 505

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + V YT+LI G+C     + A  L   M++    PN  T+NV++  LCK  KM EAS 
Sbjct: 506 KANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASS 565

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  M+ +GV+P    Y  L+      G  + A ++F  M S G   DV +Y   ++ Y 
Sbjct: 566 LVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYF 625

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
               +E    + ++M  +GI P +VTY
Sbjct: 626 SQGMLEEVDDVIAKMNEEGILPDLVTY 652



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 173/396 (43%), Gaps = 60/396 (15%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F I D M   +   P   ++N L   L K +     ++L  ++    L P L TYN LI+
Sbjct: 389 FEILDLM-ESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIH 447

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK+  +   + +L  +  +   PD  T++  I  LC E R+ EA  LF  ++A G K 
Sbjct: 448 GQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKA 507

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +   YT LI+G C+ G   VA +L E M N        C P++ TY+ + +GLCKE  + 
Sbjct: 508 NEVIYTALIDGYCKVGKIDVAYSLLERMLND------ACLPNSYTYNVLIEGLCKEKKMK 561

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  L  KM    + P VVTYT LI        ++ A  +F  M+  G QP+V T+   +
Sbjct: 562 EASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL 621

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC---LTGRV------------- 284
           +     G ++E   ++  M + G+ PD   Y  L+DG+    LT R              
Sbjct: 622 HAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCK 681

Query: 285 ----------------NRAKE---------------------LFVSMESNGCMRDVFSYG 307
                           NR KE                     LF  M  +GC  DV  YG
Sbjct: 682 PSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYG 741

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LI G+C+ + +E A  L   M  +G+ P+   YN+
Sbjct: 742 ALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNS 777



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 24/346 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N+L   L K K      SL  ++ ++G+ P + TY ILI    K G       V
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++   + PD  T+T+ +    ++  + E   +  K+   G  PD+ TYT LI+G  R
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK----------- 183
            G T  A +  + M +        CKP     S +   L  E  + + +           
Sbjct: 662 LGLTHRAFDFLKCMVDTG------CKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNT 715

Query: 184 -------ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
                  +LF KM +     DV  Y +LI GFC      EA+ L   M ++G+ P+   +
Sbjct: 716 LEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIY 775

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N +++  CK G   EA RL++ M++ G+ P    Y  L+ G  + G   +AK +F  + S
Sbjct: 776 NSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLS 835

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G   D  ++ +LI+G  K   ++    L   M  KG +P  +TY+
Sbjct: 836 CGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYS 881



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 7/171 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M+  H     V  +  L     + +  +    L   +   G+ P    YN L++C 
Sbjct: 724 LFEKMVE-HGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCC 782

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+G  +    ++  ++ +   P   ++  L+ GL  E    +A A+F  L + G   D 
Sbjct: 783 CKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDE 842

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
             +  LI+GL +         L + M          C+P+ +TYS + +GL
Sbjct: 843 VAWKVLIDGLLKRDLVDECSELIDIMEEKG------CQPNPLTYSLLIEGL 887



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 49/116 (42%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L  C  K   Y   + L   +   GL P L +Y +L+      G       V   +L
Sbjct: 775 YNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLL 834

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
              +  D V +  LI GL     + E + L   +   GC+P+  TY+ LI GL RT
Sbjct: 835 SCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGLERT 890


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 176/338 (52%), Gaps = 7/338 (2%)

Query: 7   MLRMHPSPPPVC-SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           M R   +PPP   S+N++   L ++      L +F  +  +G+ P+  TYN +I+   K 
Sbjct: 183 MGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKG 242

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G +  GF +  ++L     P+ VT+  L+ GLC   R+ E   L  ++ +    PD FTY
Sbjct: 243 GDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTY 302

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           + L +GL RTG +   L+LF E        G      A T S + +GLCK+G V KA+++
Sbjct: 303 SILFDGLTRTGESRTMLSLFAESLKKGVMLG------AYTCSILLNGLCKDGKVAKAEQV 356

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
              +    + P  V Y +LI G+C   D   A C+F +M  + ++P+ +T+N ++N LCK
Sbjct: 357 LEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCK 416

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
              + +A  L+  M + GV P    +NTL+D +   G++ +   +   M+  G   DV S
Sbjct: 417 LEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVIS 476

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G ++  +CKN +I  A+++  +M+ K + P    YN+
Sbjct: 477 FGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 514



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 181/344 (52%), Gaps = 9/344 (2%)

Query: 1   FCIFDYMLRMHPSPPP-VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           F + D ML  H  P P + ++N+L   L +    D    L   + S  +FPD +TY+IL 
Sbjct: 249 FRLRDQML--HDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILF 306

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +   + G       +    L+      A T + L+ GLC + ++ +A  +   L   G  
Sbjct: 307 DGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLV 366

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P    Y TLING C+      A  +FE+M + +       +PD ITY+ + +GLCK   V
Sbjct: 367 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH------IRPDHITYNALINGLCKLEMV 420

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            KA++L ++M+   ++P V T+ +LI  +  A    +   +  +M  +G++ +V++F  +
Sbjct: 421 TKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSV 480

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   CKNGK+ EA  +L+ MI   V P+A VYN+++D +  +G   +A  L   M+++G 
Sbjct: 481 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 540

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              + +Y +L+ G C++ +I+ A  L   + ++G+RP VV+YNT
Sbjct: 541 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNT 584



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 165/331 (49%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S N+L   L     +  V + F  L + G  PD + +N ++      G +     +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 75  LGRILRS--CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           + R+ RS     PDA ++  +I GL    +  +A  +F ++   G  P+  TY T+I+G 
Sbjct: 180 VRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGH 239

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            + G       L ++M +         KP+ +TY+ +  GLC+ G +D+ + L  +M   
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGP------KPNIVTYNVLLSGLCRAGRMDETRVLMDEMASH 293

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           ++ PD  TY+ L  G     +      LF E + +GV     T ++++N LCK+GK+ +A
Sbjct: 294 SMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKA 353

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            ++LE+++  G+ P   +YNTL++G+C    +  A  +F  M+S     D  +Y  LING
Sbjct: 354 EQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALING 413

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            CK + +  A  L  EM   G+ P+V T+NT
Sbjct: 414 LCKLEMVTKAEDLVMEMEKSGVDPSVETFNT 444



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 165/360 (45%), Gaps = 29/360 (8%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   +++ILF  L +     T+LSLF      G+    YT +IL+N  CK G+V+ 
Sbjct: 293 HSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAK 352

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              VL  ++ +   P  V + +LI G C    +  A  +F ++++   +PD  TY  LIN
Sbjct: 353 AEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALIN 412

Query: 131 GLCRTGHTIVALNLFEEMA---------------NGNGEFGVV--------------CKP 161
           GLC+      A +L  EM                +  G  G +               K 
Sbjct: 413 GLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKS 472

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           D I++ ++    CK G + +A  +   M  +++ P+   Y S+I  +  + D  +A  L 
Sbjct: 473 DVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLV 532

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +M + GV  ++VT+N+++  LC++ ++DEA  L+  +   G+RPD   YNT++   C  
Sbjct: 533 EKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNK 592

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G  ++A EL   M   G    + +Y  L++       +     LY +ML K + P+   Y
Sbjct: 593 GDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIY 652



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 158/320 (49%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N L     + +       +F+++ S  + PD  TYN LIN  CK+  V+    +
Sbjct: 367 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL 426

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + +S   P   TF +LI       ++ +   + + ++  G K DV ++ +++   C+
Sbjct: 427 VMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCK 486

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ + ++M   +        P+A  Y++I D   + G  ++A  L  KMK+  +
Sbjct: 487 NGKIPEAVAILDDMIYKD------VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 540

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +  +VTY  L++G C ++  +EA+ L   + +QG++P+VV++N I++  C  G  D+A  
Sbjct: 541 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 600

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G+RP    Y+TL+      GRV+  + L+  M           YGI+++ Y 
Sbjct: 601 LLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYV 660

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           + +      SL  EM  KGI
Sbjct: 661 RCENDSKVASLKKEMSEKGI 680



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 144/302 (47%), Gaps = 7/302 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           FCIF+ M   H  P  + ++N L   L K +       L   +   G+ P + T+N LI+
Sbjct: 389 FCIFEQMKSRHIRPDHI-TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLID 447

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +   G++   F VL  + +     D ++F S++K  C   +I EA A+   +      P
Sbjct: 448 AYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAP 507

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +   Y ++I+    +G T  A  L E+M N      +V      TY+ +  GLC+   +D
Sbjct: 508 NAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIV------TYNLLLKGLCRSSQID 561

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A+EL   ++++ + PDVV+Y ++I   C   D ++A  L  EM   G++P + T++ ++
Sbjct: 562 EAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLV 621

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L   G++ +   L + M+   V P +S+Y  ++D +      ++   L   M   G  
Sbjct: 622 SALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 681

Query: 301 RD 302
            D
Sbjct: 682 FD 683


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 99/261 (37%), Positives = 152/261 (58%), Gaps = 10/261 (3%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
            TP  +TF +LI GLC E R++EAAAL  K+   G   DV TY T++NG+C+ G T  AL
Sbjct: 6   LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 65

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
           NL  +M   +       KPD + YS I D LCK+G    A+ LF +M ++ I P+V TY 
Sbjct: 66  NLLSKMEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYN 119

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
            +I GFC    W++A+ L  +M+++ + P+V+TFN +++   K GK+ EA +L + M+  
Sbjct: 120 CMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHR 179

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
            + PD   YN+++ GFC   R + AK +F  M S     DV ++  +I+ YC+ K ++  
Sbjct: 180 CIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEG 235

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           + L  E+  +G+     TYNT
Sbjct: 236 MQLLREISRRGLVANTTTYNT 256



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 170/329 (51%), Gaps = 10/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ +   L K+ H+     LF  +   G+ P+++TYN +I+ FC  GR S    +
Sbjct: 78  PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 137

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD +TF +LI     E ++ EA  L  ++      PD  TY ++I G C+
Sbjct: 138 LRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK 197

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F+ MA+          PD +T++TI D  C+   VD+  +L  ++    +
Sbjct: 198 HNRFDDAKHMFDLMAS----------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 247

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +  TY +LI GFC  ++ N A+ LF EM+  GV P+ +T N+++   C+N K++EA  
Sbjct: 248 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 307

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E++    +  D   YN ++ G C   +V+ A +LF S+  +G   DV +Y ++I+G+C
Sbjct: 308 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 367

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               I  A  L+ +M   G  P   TYNT
Sbjct: 368 GKSAISDANVLFHKMKDNGHEPDNSTYNT 396



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 170/328 (51%), Gaps = 10/328 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L   L          +L  ++   GL  D+ TY  ++N  CKMG       +
Sbjct: 8   PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 67

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++  +   PD V ++++I  LC +    +A  LF+++   G  P+VFTY  +I+G C 
Sbjct: 68  LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCS 127

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  +M            PD +T++ +     KEG + +A++L  +M    I
Sbjct: 128 FGRWSDAQRLLRDMIERE------INPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCI 181

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY S+I GFC  N +++AK +F    D    P+VVTFN I++  C+  ++DE  +
Sbjct: 182 FPDTVTYNSMIYGFCKHNRFDDAKHMF----DLMASPDVVTFNTIIDVYCRAKRVDEGMQ 237

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  + + G+  + + YNTL+ GFC    +N A++LF  M S+G   D  +  IL+ G+C
Sbjct: 238 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFC 297

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +N+++E AL L+  +    I    V YN
Sbjct: 298 ENEKLEEALELFEVIQMSKIDLDTVAYN 325



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L     K         L   +    +FPD  TYN +I  FCK  R    F  
Sbjct: 148 PDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR----FDD 203

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +PD VTF ++I   C   R+ E   L  ++   G   +  TY TLI+G C 
Sbjct: 204 AKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCE 263

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A +LF+EM +       VC PD IT + +  G C+   +++A ELF  ++   I
Sbjct: 264 VDNLNAAQDLFQEMISHG-----VC-PDTITCNILLYGFCENEKLEEALELFEVIQMSKI 317

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + D V Y  +I G C  +  +EA  LF  +   GV+P+V T+NV+++  C    + +A+ 
Sbjct: 318 DLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANV 377

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           L   M   G  PD S YNTL+ G    G ++++ EL   M SNG   D F+
Sbjct: 378 LFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 428



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
            G  P V T+ TLINGLC  G  + A  L  +M  G G        D +TY TI +G+CK
Sbjct: 4   IGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV-GKG-----LHIDVVTYGTIVNGMCK 57

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
            G    A  L  KM++ +I PDVV Y+++I   C     ++A+ LF EM+++G+ PNV T
Sbjct: 58  MGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFT 117

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N +++  C  G+  +A RLL  MI+  + PD   +N L+      G++  A++L   M 
Sbjct: 118 YNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEML 177

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                 D  +Y  +I G+CK+   + A  ++  M S    P VVT+NT
Sbjct: 178 HRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNT 221



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 129/273 (47%), Gaps = 11/273 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K+  +D    +F  + S    PD+ T+N +I+ +C+  RV  G  +
Sbjct: 183 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQL 238

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  I R     +  T+ +LI G C    +  A  LF ++ + G  PD  T   L+ G C 
Sbjct: 239 LREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCE 298

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL LFE +     +       D + Y+ I  G+CK   VD+A +LF  +    +
Sbjct: 299 NEKLEEALELFEVIQMSKIDL------DTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGV 352

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TY  +I GFC  +  ++A  LF +M D G +P+  T+N ++    K G++D++  
Sbjct: 353 EPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIE 412

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           L+  M   G   DA     + D     GR++++
Sbjct: 413 LISEMRSNGFSGDAFTIKMVAD-LITDGRLDKS 444



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   + NIL     +N+  +  L LF+ +    +  D   YNI+I+  CK  +V  
Sbjct: 280 HGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDE 339

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            + +   +      PD  T+  +I G C +S I +A  LF K++  G +PD  TY TLI 
Sbjct: 340 AWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 399

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           G  + G    ++ L  EM   NG  G     DA T   + D L  +G +DK+
Sbjct: 400 GCLKAGEIDKSIELISEM-RSNGFSG-----DAFTIKMVAD-LITDGRLDKS 444


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 175/326 (53%), Gaps = 8/326 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           S+N L   L K K      ++F  + S   + PD+ +Y+ILI+ FCK+  +     +  +
Sbjct: 123 SYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQ 182

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           ++     P+  T+ + + GL  + RI +A  ++ ++ + GC PDV TY+TLI+G      
Sbjct: 183 MIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARK 242

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A  LFE M +        C+P+A+TY+ +  GLCKE   D+A ELF KM +   +PD
Sbjct: 243 HDQAHELFEAMISRG------CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPD 296

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            VTYT+L+ GFC      +A  +F EM+ +G  P+VV +N ++    + GK  EA +L +
Sbjct: 297 KVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQ 356

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYGILINGYCKN 316
           +M+    +PD   +N ++DG     R++ A E+F  ME + GC  D+ +Y  LI G C  
Sbjct: 357 VMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGE 416

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +  A+ ++ E+    + P    +N
Sbjct: 417 QRLSEAMKVFKEIDRLKLSPDPHAFN 442



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 173/319 (54%), Gaps = 9/319 (2%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K    D+ LSL + +   G  PD+ T+++LIN  CK  ++      L  + R+  T  
Sbjct: 59  LCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRA 118

Query: 87  AVTFT--SLIKGLCAESRIMEAAALF-TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
           +  F+  SL+  LC   ++ +A A+F T +      PDV +Y+ LI+G C+      A  
Sbjct: 119 SSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEK 178

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L+++M + N      C P+  TY+   +GL ++G +  A+ ++ +M     +PDV+TY++
Sbjct: 179 LYKQMIDLN------CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYST 232

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           LI GF  A   ++A  LF  M+ +G +PN VT+N +++ LCK  K DEA  L   M++ G
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG 292

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
             PD   Y TL+ GFC  G++ +A E+F  M S G   DV +Y  L+ G+ +  +   A 
Sbjct: 293 CDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAR 352

Query: 324 SLYSEMLSKGIRPTVVTYN 342
            L+  M+S+  +P  V++N
Sbjct: 353 QLFQVMVSRECKPDTVSHN 371



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 150/293 (51%), Gaps = 8/293 (2%)

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
           ++YN L+N  CK  +V   F +   ++      PD V+++ LI G C    +  A  L+ 
Sbjct: 122 FSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYK 181

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
           ++    C P+V TY   +NGL R G    A  ++EEM +        C PD ITYST+  
Sbjct: 182 QMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAG------CSPDVITYSTLIH 235

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           G       D+A ELF  M      P+ VTY  L+ G C  +  +EA  LF +M+++G  P
Sbjct: 236 GFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDP 295

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           + VT+  ++   C  GK+++A  + + M+  G  PD   YN L+ GF   G+   A++LF
Sbjct: 296 DKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLF 355

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM-LSKGIRPTVVTYNT 343
             M S  C  D  S+ I+I+G  K K ++ A+ ++  M    G  P +VTYN+
Sbjct: 356 QVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNS 408



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 163/313 (52%), Gaps = 7/313 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F IF  M+      P V S++IL     K         L+K++  +   P++ TYN  +N
Sbjct: 141 FAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLN 200

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              + GR++    V   ++ +  +PD +T+++LI G     +  +A  LF  + + GC+P
Sbjct: 201 GLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRP 260

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  TY  L++GLC+      A  LF +M     E G  C PD +TY+T+  G C  G ++
Sbjct: 261 NAVTYNCLLHGLCKESKPDEAHELFRKMV----ERG--CDPDKVTYTTLLYGFCNVGKIE 314

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A E+F +M  +  +PDVV Y  L++GF  A    EA+ LF  M+ +  +P+ V+ N+++
Sbjct: 315 QAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMI 374

Query: 241 NELCKNGKMDEASRLLELMIQ-IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           + L K  ++D+A  + E M Q  G  PD   YN+L+ G C   R++ A ++F  ++    
Sbjct: 375 DGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKL 434

Query: 300 MRDVFSYGILING 312
             D  ++ +L+  
Sbjct: 435 SPDPHAFNVLLEA 447



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 149/294 (50%), Gaps = 8/294 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVV---LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
            +   +   CK G++   F     +   L S   P + T  S+I+ LC   R+  A +L 
Sbjct: 13  AWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSLL 72

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
             +   G  PD+ T++ LIN LC+      A    + M          C     +Y+++ 
Sbjct: 73  ETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSC----FSYNSLL 128

Query: 171 DGLCKEGFVDKAKELFLKMKDE-NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
           + LCK   V +A  +F  M  E ++ PDVV+Y+ LI GFC  ++   A+ L+ +M+D   
Sbjct: 129 NSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNC 188

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PNV T+N  +N L + G++ +A  + E MI  G  PD   Y+TL+ GF L  + ++A E
Sbjct: 189 VPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHE 248

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LF +M S GC  +  +Y  L++G CK  + + A  L+ +M+ +G  P  VTY T
Sbjct: 249 LFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTT 302



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 30/263 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N     L +         +++ + S G  PD+ TY+ LI+ F    +      +
Sbjct: 190 PNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHEL 249

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+AVT+  L+ GLC ES+  EA  LF K+   GC PD  TYTTL+ G C 
Sbjct: 250 FEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCN 309

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----------------------------CKPDAIT 165
            G    A+ +F+EM +   +  VV                             CKPD ++
Sbjct: 310 VGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVS 369

Query: 166 YSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           ++ + DGL K   +D A E+F +M +D   +PD+VTY SLI G C     +EA  +F E+
Sbjct: 370 HNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 429

Query: 225 MDQGVQPNVVTFNVIMNELCKNG 247
               + P+   FNV++  +   G
Sbjct: 430 DRLKLSPDPHAFNVLLEAMYAAG 452



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 6/186 (3%)

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV---TYTSLIRGFCYANDWNEAKCL 220
           + ++    GLCK G +++A E    M++   +       T  S+I+  C A   + A  L
Sbjct: 12  VAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSL 71

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ-IGVRPDASV-YNTLMDGF 278
              M+ +G  P++ T ++++NELCK  K+ EA   L+ M + I  R  +   YN+L++  
Sbjct: 72  LETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSL 131

Query: 279 CLTGRVNRAKELFVSMESN-GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           C   +V++A  +F +M S    + DV SY ILI+G+CK  E+  A  LY +M+     P 
Sbjct: 132 CKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPN 191

Query: 338 VVTYNT 343
           V TYN 
Sbjct: 192 VTTYNA 197



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+      P V ++N L     +         LF+ + S    PD  ++NI+I+  
Sbjct: 319 VFDEMVS-KGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGL 377

Query: 63  CKMGRVSPGFVVLGRILRS--CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            K  R+     V  R+ +   C +PD VT+ SLI GLC E R+ EA  +F ++      P
Sbjct: 378 SKAKRLDDAVEVFERMEQDHGC-SPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSP 436

Query: 121 DVFTYTTLINGLCRTGH 137
           D   +  L+  +   GH
Sbjct: 437 DPHAFNVLLEAMYAAGH 453



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 41/152 (26%)

Query: 232 NVVTFNVIMNELCKNGKM--------------------------------------DEAS 253
           N V +   +  LCK+GK+                                      D A 
Sbjct: 10  NNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSAL 69

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR--DVFSYGILIN 311
            LLE MI+ G  PD + ++ L++  C   ++  A+E    M      R    FSY  L+N
Sbjct: 70  SLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLN 129

Query: 312 GYCKNKEIEGALSLYSEMLS-KGIRPTVVTYN 342
             CK K++  A +++S M+S + + P VV+Y+
Sbjct: 130 SLCKAKKVHQAFAIFSTMVSERSVVPDVVSYS 161


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 166/314 (52%), Gaps = 6/314 (1%)

Query: 30  NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
           N   ++  S+F  +   G   +  +Y  LI+  C++GRV  G  +  ++      P   T
Sbjct: 17  NNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRT 76

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           +T ++  L    R MEA  LF+++R  GC+P++ TYT +IN +C+         + +EM 
Sbjct: 77  YTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMV 136

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
               E G+V  P   TY+ + DG CKEG V+ A+E+   M   + NP+  TY  LI GFC
Sbjct: 137 ----EKGLV--PSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFC 190

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
              + + A  L  +M++  + P+VVT+N +++  CK G +D A RLL LM + GV PD  
Sbjct: 191 RKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQW 250

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y+  +D  C  GR+  A  LF S++  G   +   Y  LI+GYCK  +++ A SL   M
Sbjct: 251 TYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRM 310

Query: 330 LSKGIRPTVVTYNT 343
           L++   P   TYN 
Sbjct: 311 LTEDCLPNSSTYNA 324



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 164/334 (49%), Gaps = 6/334 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P + ++ ++   + K    +    +   +   GL P + TYN LI+ +CK G 
Sbjct: 100 MRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGM 159

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +L  +  +   P+  T+  LI G C +  +  A AL +K+      P V TY +
Sbjct: 160 VEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNS 219

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+G C+ G+   A  L   M     E GVV  PD  TYS   D LCK+G +++A  LF 
Sbjct: 220 LIHGQCKIGYLDSAYRLLNLM----NENGVV--PDQWTYSVFIDTLCKKGRIEEANVLFN 273

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            +K++ I  + V YT+LI G+C A   ++A  L   M+ +   PN  T+N +++ LCK  
Sbjct: 274 SLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKER 333

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+ EA  L+E MIQ G++     Y  L+      G  + A  +   M S+G   DV+ Y 
Sbjct: 334 KVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYT 393

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             I+ +C    I+ A  + S M  +G+ P  +TY
Sbjct: 394 AFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTY 427



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 153/328 (46%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    +    +   ++S    P+  TYN LI  FC+   V     +
Sbjct: 142 PSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMAL 201

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L S  TP  VT+ SLI G C    +  A  L   +   G  PD +TY+  I+ LC+
Sbjct: 202 LSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCK 261

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  LF    N   E G+  K + + Y+ + DG CK G +D A  L  +M  E+ 
Sbjct: 262 KGRIEEANVLF----NSLKEKGI--KANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDC 315

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY +LI G C      EA  L   M+ +G++  V T+ +++  + K G  D A R
Sbjct: 316 LPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHR 375

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+ M+  G +PD  +Y   +  FC  G +  A+++   M   G M D  +Y ++I+ Y 
Sbjct: 376 ILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYG 435

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               +  A  +   M   G  P+  TY+
Sbjct: 436 GLGLLNPAFDVLKRMFDTGCDPSHHTYS 463



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 162/363 (44%), Gaps = 37/363 (10%)

Query: 10  MHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           MH +   P   ++N L     + K+    ++L  ++    L P + TYN LI+  CK+G 
Sbjct: 170 MHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGY 229

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +   + +L  +  +   PD  T++  I  LC + RI EA  LF  L+  G K +   YT 
Sbjct: 230 LDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTA 289

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+G C+ G    A +L + M   +      C P++ TY+ + DGLCKE  V +A  L  
Sbjct: 290 LIDGYCKAGKMDDANSLLDRMLTED------CLPNSSTYNALIDGLCKERKVQEALLLME 343

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M  + +   V TYT LI       D++ A  +  +M+  G QP+V  +   ++  C  G
Sbjct: 344 SMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRG 403

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            + EA  ++ +M + GV PDA  Y  ++D +   G +N A ++   M   GC     +Y 
Sbjct: 404 NIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYS 463

Query: 308 ILINGYCKNK-----------------------------EIEGALSLYSEMLSKGIRPTV 338
            LI    K +                             + E AL L+ +ML  G  P +
Sbjct: 464 CLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNI 523

Query: 339 VTY 341
            TY
Sbjct: 524 NTY 526



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 132/220 (60%), Gaps = 5/220 (2%)

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVV----CKPDAITYSTITDGLCKEGFVDKAK 183
           ++NG C+ G+ + A NL  ++ +    F ++    C+ + ++Y+ +  GLC+ G VD+  
Sbjct: 1   MVNGYCKLGNLVEA-NLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGI 59

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +F KM++++  P V TYT ++     +    EA  LF EM ++G +PN+ T+ V++N +
Sbjct: 60  NIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAM 119

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK  K++E  R+L+ M++ G+ P    YN L+DG+C  G V  A+E+   M SN C  + 
Sbjct: 120 CKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNE 179

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  LI G+C+ K +  A++L S+ML   + P+VVTYN+
Sbjct: 180 RTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNS 219



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 35/358 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K  + D+   L   +N  G+ PD +TY++ I+  CK GR+    V+
Sbjct: 212 PSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVL 271

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       + V +T+LI G C   ++ +A +L  ++    C P+  TY  LI+GLC+
Sbjct: 272 FNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCK 331

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L E M     + G+ C     TY+ +   + KEG  D A  +  +M     
Sbjct: 332 ERKVQEALLLMESMI----QKGLKCT--VPTYTILIVAMLKEGDFDYAHRILDQMVSSGY 385

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV  YT+ I  FC   +  EA+ +   M ++GV P+ +T+ ++++     G ++ A  
Sbjct: 386 QPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFD 445

Query: 255 LLELMIQIGVRPDASVYNTLMDGFC---LTGRVNR------------------------- 286
           +L+ M   G  P    Y+ L+       LT +                            
Sbjct: 446 VLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFE 505

Query: 287 -AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A ELF  M  +GC  ++ +Y  LI G CK   +  A  L+  M  +G+ P+   YN+
Sbjct: 506 TALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNS 563



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 146/356 (41%), Gaps = 35/356 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L K +     L L + +   GL   + TY ILI    K G       +
Sbjct: 317 PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRI 376

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++ S + PD   +T+ I   C    I EA  + + +   G  PD  TYT +I+    
Sbjct: 377 LDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGG 436

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK----------- 183
            G    A ++ + M      F   C P   TYS +   L KE    K K           
Sbjct: 437 LGLLNPAFDVLKRM------FDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNV 490

Query: 184 ------------------ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
                             ELF KM +   +P++ TY  LI G C       A+ LF  M 
Sbjct: 491 FFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMN 550

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++GV P+   +N ++N  C+ G   +A RL+  M++ G  P     N L  G    G   
Sbjct: 551 ERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKE 610

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +AK +F ++   G   D  ++ ILI+G  KN   +G   L   M ++G +    TY
Sbjct: 611 KAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTY 666



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 136/325 (41%), Gaps = 35/325 (10%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++ IL   + K   +D    +  ++ S G  PD+Y Y   I+ FC  G +     ++ 
Sbjct: 354 VPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMS 413

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      PDA+T+T +I        +  A  +  ++   GC P   TY+ LI  L +  
Sbjct: 414 MMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEE 473

Query: 137 HTI-----------------------------VALNLFEEMANGNGEFGVVCKPDAITYS 167
            T                               AL LFE+M     E G  C P+  TY+
Sbjct: 474 LTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKML----EHG--CSPNINTYA 527

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
            +  GLCK G +  A++LF  M +  ++P    Y SL+   C    + +A  L   MM+ 
Sbjct: 528 KLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEH 587

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G  P + + NV+   L + G  ++A  +   ++Q G   D   +  L+DG    G  +  
Sbjct: 588 GHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGC 647

Query: 288 KELFVSMESNGCMRDVFSYGILING 312
            EL   ME+ GC     +Y +LI G
Sbjct: 648 SELLGVMEARGCQIHPQTYRMLIEG 672



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 17/176 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ ML  H   P + ++  L   L K         LF  +N  G+ P    YN L+NC 
Sbjct: 510 LFEKMLE-HGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCC 568

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++G       ++G ++     P   +   L  GL  E    +A  +F+ L   G   D 
Sbjct: 569 CELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDE 628

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGE-FGVV----CKPDAITYSTITDGL 173
             +  LI+GL + G           +++G  E  GV+    C+    TY  + +GL
Sbjct: 629 VAWKILIDGLLKNG-----------LSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 174/339 (51%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+ +   P       ++ G L K    +    L  ++  +G+ P+L+ YN +IN  
Sbjct: 317 MMDEMIELGYVPSEAAVSGLIEG-LIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSL 375

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G++    ++   +      P+ VT+T LI G    +++  A   F K+   G    V
Sbjct: 376 CKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATV 435

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           ++Y ++IN  C+ G   +A  LF+EM +         KP   TY+++  G CK+G V KA
Sbjct: 436 YSYNSMINCQCKFGKMKMAELLFKEMVDKG------LKPTVATYTSLISGYCKDGLVPKA 489

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L+ +M  + I P+ VT+T+LI G C  N   EA  LF EM++  + PN VT+NV++  
Sbjct: 490 FKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEG 549

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ G    A  LL+ MI+ G+ PD   Y  L+ G C TGRV+ AKE    +       D
Sbjct: 550 HCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLD 609

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              Y  L+ G+CK   I+ AL    EM+ +G++  +V+Y
Sbjct: 610 ELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSY 648



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 178/368 (48%), Gaps = 33/368 (8%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++R +   P V + + L   LA+ + +  VL LF  L + G+ PD Y Y +++ C C++ 
Sbjct: 180 LMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELK 239

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
             +    ++ +   +  +   VT+   I GLC   R+ EA  +   L   G K D+ TY 
Sbjct: 240 DFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYC 299

Query: 127 TLINGLCRTGHTIVALNLFEEMA-------------------------------NGNGEF 155
           TL+ GLCR     V + + +EM                                N  G+ 
Sbjct: 300 TLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKL 359

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
           GVV  P+   Y+++ + LCK G +++A+ LF  M +  +NP+ VTYT LI GF      +
Sbjct: 360 GVV--PNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLD 417

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
            A   F +M++ G+   V ++N ++N  CK GKM  A  L + M+  G++P  + Y +L+
Sbjct: 418 VAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLI 477

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            G+C  G V +A +L+  M   G   +  ++  LI G C+  ++  A  L+ EM+   I 
Sbjct: 478 SGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKIL 537

Query: 336 PTVVTYNT 343
           P  VTYN 
Sbjct: 538 PNEVTYNV 545



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 176/375 (46%), Gaps = 42/375 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+ +   P  V ++N+L     +  +      L   +   GL PD YTY  LI   
Sbjct: 527 LFDEMVELKILPNEV-TYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGL 585

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GRVS     +  +       D + +T+L++G C E RI EA     ++   G + D+
Sbjct: 586 CSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDL 645

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y  LI+G       I+   L  EM +G G      +PD + Y+ + DG  K G + KA
Sbjct: 646 VSYAVLISGALNQNDRIL-FELLREM-HGKG-----MQPDNVIYTILIDGFIKSGNLKKA 698

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM------------------ 224
            E +  M  E   P+ VTYT+L+ G   A   NEAK LF  M                  
Sbjct: 699 FEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDH 758

Query: 225 ----------------MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
                           M QG   N VT+N+++   C+ GK  EA++LL++MI IG+ PD 
Sbjct: 759 LTKEGNMENALQLHNAMLQGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDC 818

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y+T +  +C  G V+ A +++  M   G   D   +  LI+  C N E++ AL L ++
Sbjct: 819 ITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRND 878

Query: 329 MLSKGIRPTVVTYNT 343
           M+ +G++PT  TY++
Sbjct: 879 MMLRGLKPTQSTYHS 893



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 154/324 (47%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++L     +NK     + +   +   GL P++ T + L+N   ++ +      +   ++
Sbjct: 158 FDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLV 217

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            +   PD   +T ++K LC      +A  +  +    GC   + TY   INGLC++    
Sbjct: 218 NAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVW 277

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A+    E+    GE G+  K D +TY T+  GLC+    +   E+  +M +    P   
Sbjct: 278 EAV----EVKRSLGEKGL--KADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEA 331

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
             + LI G         A  L  ++   GV PN+  +N ++N LCK GK++EA  L  +M
Sbjct: 332 AVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVM 391

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + G+ P+   Y  L+DGF    +++ A   F  M   G    V+SY  +IN  CK  ++
Sbjct: 392 AERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKM 451

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           + A  L+ EM+ KG++PTV TY +
Sbjct: 452 KMAELLFKEMVDKGLKPTVATYTS 475



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 131/261 (50%), Gaps = 7/261 (2%)

Query: 28  AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA 87
           A N++   +  L + ++  G+ PD   Y ILI+ F K G +   F     ++   + P++
Sbjct: 655 ALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNS 714

Query: 88  VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           VT+T+L+ GL     + EA  LF ++      P+  TY   ++ L + G+   AL L   
Sbjct: 715 VTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNA 774

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M  G+         + +TY+ +  G C+ G   +A +L   M    + PD +TY++ I  
Sbjct: 775 MLQGSF-------ANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYE 827

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           +C   + + A  ++  M+ +G++P+ V FN +++  C NG++D A +L   M+  G++P 
Sbjct: 828 YCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPT 887

Query: 268 ASVYNTLMDGFCLTGRVNRAK 288
            S Y++LM       R+ + +
Sbjct: 888 QSTYHSLMVQLAQRARLTQVQ 908



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 7/202 (3%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F Y++      P   ++  L   L K  + +    LFKR+      P+  TY   ++   
Sbjct: 701 FWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLT 760

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G +     +   +L+  F  + VT+  LI+G C   +  EAA L   +   G  PD  
Sbjct: 761 KEGNMENALQLHNAMLQGSFA-NTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCI 819

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY+T I   C+ G+   A++++E M           KPD + ++ +    C  G +D+A 
Sbjct: 820 TYSTFIYEYCKRGNVDAAMDMWECMLQRG------LKPDRVVFNFLIHACCLNGELDRAL 873

Query: 184 ELFLKMKDENINPDVVTYTSLI 205
           +L   M    + P   TY SL+
Sbjct: 874 QLRNDMMLRGLKPTQSTYHSLM 895


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 171/336 (50%), Gaps = 6/336 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R   + P   S N L   L+K+ +   V   F  +   G+ P ++TYN++I+  CK G 
Sbjct: 186 MRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGD 245

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +  ++     +PD VT+ SLI G      + E A+LF +++  GC PD+ TY  
Sbjct: 246 LENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNG 305

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LIN  C+      A   F EM N NG      KP+ +TYST+ D  CKEG +  A +L  
Sbjct: 306 LINCYCKFEKMPRAFEYFSEMKN-NG-----LKPNVVTYSTLIDAFCKEGMMQGAIKLLX 359

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M+   + P+  TYTSLI   C A +  EA  L  +M+  GV+ N+VT+  +++ LCK G
Sbjct: 360 DMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAG 419

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           +M EA  +   M++ G+ P+  VY  L+ G+    R+  A ++   M       D+  YG
Sbjct: 420 RMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYG 479

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +I G+C  +++E    +  EM S+GI    V   T
Sbjct: 480 SIIWGHCSQRKLEETKLILEEMKSRGISANPVISTT 515



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    + V SLF  +  +G  PD+ TYN LINC+CK  ++   F  
Sbjct: 263 PDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY 322

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  +   P+ VT+++LI   C E  +  A  L   +R  G  P+ FTYT+LI+  C+
Sbjct: 323 FSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCK 382

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L  +M           K + +TY+ + DGLCK G + +A+E+F  M  + I
Sbjct: 383 AGNLTEAWKLLNDMLQAG------VKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI 436

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+   YT+L+ G+  A    +A  +  +M +  ++P+++ +  I+   C   K++E   
Sbjct: 437 SPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKL 496

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +LE M   G+  +  +  T++D +   G+ + A   F  M+  G    + +Y +LI+G C
Sbjct: 497 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC 556

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   +E A+  +  MLS G++P V  Y +
Sbjct: 557 EAGIVELAVDYFCRMLSLGLQPNVAVYTS 585



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 160/324 (49%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++LF    +    +     F R+ +    P   + N L++   K G           ++
Sbjct: 163 FDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMI 222

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            +   P   T+  +I  LC E  +  +  LF ++R  G  PDV TY +LI+G  + G   
Sbjct: 223 GAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLE 282

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
              +LF EM +      V C PD ITY+ + +  CK   + +A E F +MK+  + P+VV
Sbjct: 283 EVASLFNEMKD------VGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVV 336

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY++LI  FC       A  L  +M   G+ PN  T+  +++  CK G + EA +LL  M
Sbjct: 337 TYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDM 396

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           +Q GV+ +   Y  L+DG C  GR+  A+E+F SM  +G   +   Y  L++GY K + +
Sbjct: 397 LQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERM 456

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           E A+ +  +M    I+P ++ Y +
Sbjct: 457 EDAMKILKQMTECNIKPDLILYGS 480



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 177/373 (47%), Gaps = 43/373 (11%)

Query: 4   FDYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           F+Y   M  +   P V +++ L     K       + L   +   GL P+ +TY  LI+ 
Sbjct: 320 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDA 379

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G ++  + +L  +L++    + VT+T+L+ GLC   R++EA  +F  +   G  P+
Sbjct: 380 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 439

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
              YT L++G  +      A+ + ++M   N       KPD I Y +I  G C +  +++
Sbjct: 440 QQVYTALVHGYIKAERMEDAMKILKQMTECN------IKPDLILYGSIIWGHCSQRKLEE 493

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
            K +  +MK   I+ + V  T++I  +  A   ++A   F EM D GV+  +VT+ V+++
Sbjct: 494 TKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLID 553

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LC+ G ++ A      M+ +G++P+ +VY +L+DG C    +  AK+LF  M+  G   
Sbjct: 554 GLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTP 613

Query: 302 DVFSYGILINGYCKNKEIEGALSL-----------------------------------Y 326
           D+ ++  LI+G  K+  ++ AL L                                   +
Sbjct: 614 DITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFF 673

Query: 327 SEMLSKGIRPTVV 339
           +EM+ KGI P  V
Sbjct: 674 NEMIEKGILPEEV 686



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 155/313 (49%), Gaps = 6/313 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++  L   L K         +F+ +   G+ P+   Y  L++ + K  R+     +L 
Sbjct: 405 IVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILK 464

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++      PD + + S+I G C++ ++ E   +  ++++ G   +    TT+I+   + G
Sbjct: 465 QMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAG 524

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            +  ALN F+EM +   E  +V      TY  + DGLC+ G V+ A + F +M    + P
Sbjct: 525 KSSDALNFFQEMQDVGVEATIV------TYCVLIDGLCEAGIVELAVDYFCRMLSLGLQP 578

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +V  YTSLI G C  N    AK LF EM  +G+ P++  F  +++   K+G + EA  L+
Sbjct: 579 NVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLI 638

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M ++ +  D  VY +L+ GF   G +++A++ F  M   G + +      L+  Y K 
Sbjct: 639 SRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKR 698

Query: 317 KEIEGALSLYSEM 329
            +++ A+ L +EM
Sbjct: 699 GQLDEAIELKNEM 711



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 102/186 (54%)

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           +C   +  +  +     + G +++A E F +M++    P   +   L+     + +    
Sbjct: 155 ICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLV 214

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           +  F +M+  G+ P+V T+NV+++ LCK G ++ + RL   M ++G+ PD   YN+L+DG
Sbjct: 215 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG 274

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           +   G +     LF  M+  GC+ D+ +Y  LIN YCK +++  A   +SEM + G++P 
Sbjct: 275 YGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPN 334

Query: 338 VVTYNT 343
           VVTY+T
Sbjct: 335 VVTYST 340


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 178/362 (49%), Gaps = 41/362 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++       K + +D    +F+ +       +  TYN++I+  C+ G V   F  
Sbjct: 241 PDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGF 300

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++    +PDA T+ +L+ GLC  SR+ EA AL  ++   G KP++  Y TL++G  +
Sbjct: 301 KEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMK 360

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A ++ +EM +         +P+ I Y  +  GLCK G + +A +L  +M    +
Sbjct: 361 EGKTAEAFDILKEMISAG------VQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGL 414

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY  L++G    +D + A  L  EM + G+ PNV ++ +++N LC+NG+  EA  
Sbjct: 415 RPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGN 474

Query: 255 LLELMIQIGVRPDASV-----------------------------------YNTLMDGFC 279
           LLE MI  G++P+A +                                   YN+L+ G  
Sbjct: 475 LLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLS 534

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             GR+  A+E +  ++  G + D F+Y  LI+GYCK   +E A  L  +ML+ G++P   
Sbjct: 535 TVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNAD 594

Query: 340 TY 341
           TY
Sbjct: 595 TY 596



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 167/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+ I+   L +N       +L + + S GL P+ + Y  LI    K G +S     
Sbjct: 451 PNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEA 510

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ ++   PD   + SLIKGL    R+ EA   + +++  G  PD FTY+ LI+G C+
Sbjct: 511 LEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCK 570

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG+   A  L  +M N         KP+A TY+ + +G  K    +K   +   M     
Sbjct: 571 TGNLEKADQLLRQMLNSG------LKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGD 624

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   Y  +IR    + +   A  +  E+   G+ P++  ++ +++ LCK   M++A  
Sbjct: 625 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVG 684

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G+ P    YN L+DGFC +G ++RA+ +F S+ + G + +  +Y  LI+G C
Sbjct: 685 LLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNC 744

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           KN +I  A  LY EML +GI P    YN
Sbjct: 745 KNGDITDAFDLYKEMLDRGIAPDAFVYN 772



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 169/340 (49%), Gaps = 6/340 (1%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            I D   R     P     ++L     K         +   +  +GL P     N L+  
Sbjct: 158 AIQDTDHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKD 217

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
             +   +   + + G +  +   PD  T+++ I+  C       A  +F ++R   C  +
Sbjct: 218 LLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMN 277

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TY  +I+GLCR+G    A    EEM +    +G+   PDA TY  + +GLCK   + +
Sbjct: 278 EVTYNVMISGLCRSGAVEEAFGFKEEMVD----YGL--SPDAFTYGALMNGLCKGSRLKE 331

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK L  +M    + P++V Y +L+ GF       EA  +  EM+  GVQPN + ++ ++ 
Sbjct: 332 AKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIR 391

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G++  AS+LL+ MI++G+RPD   YN LM G       + A EL   M ++G + 
Sbjct: 392 GLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILP 451

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +V+SYGI+ING C+N E + A +L  EM+S+G++P    Y
Sbjct: 452 NVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMY 491



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 168/364 (46%), Gaps = 41/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +  L     K         + K + S G+ P+   Y+ LI   CK+G++     +
Sbjct: 346 PNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKL 405

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD  T+  L++G   +     A  L  ++R  G  P+V++Y  +INGLC+
Sbjct: 406 LKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQ 465

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G +  A NL EEM +         KP+A  Y+ +  G  KEG +  A E   KM   N+
Sbjct: 466 NGESKEAGNLLEEMISEG------LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANV 519

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD+  Y SLI+G        EA+  + ++  +G+ P+  T++ +++  CK G +++A +
Sbjct: 520 HPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQ 579

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-------------------- 294
           LL  M+  G++P+A  Y  L++G+  +    +   +  SM                    
Sbjct: 580 LLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLS 639

Query: 295 ---------------ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
                          E NG + D+  Y  LI+G CK  ++E A+ L  EM  +G+ P +V
Sbjct: 640 RSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIV 699

Query: 340 TYNT 343
            YN 
Sbjct: 700 CYNA 703



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 154/325 (47%), Gaps = 28/325 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K+  Y+ V S+ + +   G  PD + Y I+I    +   +   F+V
Sbjct: 591 PNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMV 650

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + ++   PD   ++SLI GLC  + + +A  L  ++   G +P +  Y  LI+G CR
Sbjct: 651 LTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCR 710

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A N+F+ +       G+V  P+ +TY+ + DG CK G +  A +L+ +M D  I
Sbjct: 711 SGDISRARNVFDSILAK----GLV--PNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGI 764

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   Y  L  G   A D  +A  L  EM ++G   NV  FN +++  CK GK+ E  +
Sbjct: 765 APDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTLVHGFCKRGKLQETEK 823

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR---DVFSYGILIN 311
           LL +M+   + P+A     ++  F   G++  A  +F  ++     +   D FS      
Sbjct: 824 LLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQKKASQSATDRFSL----- 878

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRP 336
                        L+++M++KG+ P
Sbjct: 879 -------------LFTDMINKGLIP 890



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 96/182 (52%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           PD  TYST  +  CK    D AK++F +M+  +   + VTY  +I G C +    EA   
Sbjct: 241 PDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGF 300

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
             EM+D G+ P+  T+  +MN LCK  ++ EA  LL+ M   G++P+  VY TL+DGF  
Sbjct: 301 KEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMK 360

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G+   A ++   M S G   +   Y  LI G CK  ++  A  L  EM+  G+RP   T
Sbjct: 361 EGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFT 420

Query: 341 YN 342
           YN
Sbjct: 421 YN 422



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 125/285 (43%), Gaps = 37/285 (12%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKL-----------------------RAFGCKPD 121
           P A  F  L   LCA S   +A  L  ++                       R+    P 
Sbjct: 113 PSADAFARLAASLCAASLFPQANGLLHQMILAHPHPPLVLASIQRAIQDTDHRSRSPSPS 172

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
                 L++   +TG    A  +   MA+     G+             +GL K+     
Sbjct: 173 TAVLDVLVDTYKKTGSVRNAAQVVLMMAD----LGLA------PTRRCCNGLLKDLLRAD 222

Query: 182 AKELFLKMKD----ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
           A EL  K+K       I PDV TY++ I   C A D++ AK +F EM  +    N VT+N
Sbjct: 223 AMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYN 282

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           V+++ LC++G ++EA    E M+  G+ PDA  Y  LM+G C   R+  AK L   M  +
Sbjct: 283 VMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCS 342

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G   ++  YG L++G+ K  +   A  +  EM+S G++P  + Y+
Sbjct: 343 GLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYD 387


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 170/355 (47%), Gaps = 29/355 (8%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +++  S P   ++  L   L K        S F  +   GL P++ TYN+L++ F K+G+
Sbjct: 126 MKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQ 185

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +   + R  F P  VT+  L+  LC+  R+  A  LF K+   GC PD +TY+T
Sbjct: 186 LDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYST 245

Query: 128 LINGLCRTGHTIVALNLFEEMA---------NGNGEFGVVCK------------------ 160
           L+NGL ++G    A  +F EM          N N     + K                  
Sbjct: 246 LVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKG 305

Query: 161 --PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
             PDA +++TI D L K    D A+E+F +M +    PD+++Y  LI  +    D  +A+
Sbjct: 306 FHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQAR 365

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            +  EM++ G  P   T+N +++ L  +G++DEA  +LE M   G RPD   YN LMD  
Sbjct: 366 QMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDML 425

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
              G   RA  LF  M+  G   D  SY + I+G   +  ++ AL L+ +M + G
Sbjct: 426 GKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVG 480



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 164/324 (50%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N+L     ++   D+ + +F+ +   G  PD YTY  L+N   K GRV         +
Sbjct: 102 AYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAM 161

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L    TP+  T+  L+       ++  A  LF +++  G +P V TY  L++ LC  G  
Sbjct: 162 LERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRV 221

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LF +M  G+G     C PD+ TYST+ +GL K G V++A ++F +M D  +  D+
Sbjct: 222 GAARKLFHKM-TGDG-----CSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDL 275

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V Y SL+     A + +    L  EM  +G  P+  +FN IM+ L K  K D A  +   
Sbjct: 276 VNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFAR 335

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M++ G +PD   YN L+D +   G   +A+++   M   G + +  +Y  LI+    + +
Sbjct: 336 MVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQ 395

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           ++ A ++  EM + G RP VVTYN
Sbjct: 396 VDEAFAVLEEMETAGCRPDVVTYN 419



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 164/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L   L  +  ++    ++K+L   G   D + YN+LI  F + G++     +
Sbjct: 63  PTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEM 122

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD  T+  L+  L    R+ EA + F  +   G  P++ TY  L++   +
Sbjct: 123 FREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRK 182

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +AL LF EM           +P  +TY+ + D LC  G V  A++LF KM  +  
Sbjct: 183 VGQLDMALGLFAEMKRRG------FQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGC 236

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD  TY++L+ G   +    EA  +F EM+D+GV  ++V +N ++  L K G MD   +
Sbjct: 237 SPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWK 296

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ M + G  PDA  +NT+MD      + + A+E+F  M  +GC  D+ SY ILI+ Y 
Sbjct: 297 LMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYA 356

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  +   A  +  EM+  G  P   TYN+
Sbjct: 357 RFGDAAQARQMLEEMVEAGFIPETKTYNS 385



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 161/360 (44%), Gaps = 32/360 (8%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
             FD ML    +P  + ++N+L     K    D  L LF  +   G  P + TYNIL++ 
Sbjct: 156 SFFDAMLERGLTPN-IPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDA 214

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C  GRV     +  ++     +PD+ T+++L+ GL    R+ EA  +F ++   G   D
Sbjct: 215 LCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVD 274

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVV------------------ 158
           +  Y +L+  L + G+      L +EM+          F  +                  
Sbjct: 275 LVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFA 334

Query: 159 ------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                 CKPD I+Y+ + D   + G   +A+++  +M +    P+  TY SLI       
Sbjct: 335 RMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDG 394

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             +EA  +  EM   G +P+VVT+N +M+ L K G+   A+RL + M   GV PD   Y 
Sbjct: 395 QVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYA 454

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK--NKEIEGALSLYSEML 330
             +DG     R++ A  LF  M++ GC  D   Y ILI    +  + E+E  L   S+ +
Sbjct: 455 VRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKHESQFM 514



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 132/286 (46%), Gaps = 6/286 (2%)

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           LI  + +  +    F +  +      +P    FT LI  L        A  ++ KL   G
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG 95

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           C+ D F Y  LI    R+G    A+ +F EM     E      PD  TY  + + L K G
Sbjct: 96  CQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSE------PDEYTYGFLVNALGKAG 149

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            V +A+  F  M +  + P++ TY  L+  F      + A  LF EM  +G QP+VVT+N
Sbjct: 150 RVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYN 209

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           ++++ LC  G++  A +L   M   G  PD+  Y+TL++G   +GRV  A ++F  M   
Sbjct: 210 ILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDR 269

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   D+ +Y  L+    K   ++    L  EM  KG  P   ++NT
Sbjct: 270 GVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNT 315



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 111/255 (43%), Gaps = 41/255 (16%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           T   LI    R   +  A +LF +  +        C P    ++ + D L   G  ++A+
Sbjct: 32  TLVKLITAYGRGNKSGDAFDLFNQAES------FACSPTVHAFTKLIDILVNSGEFERAE 85

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            ++ K+  +    D   Y  LIR F  +   + A  +F EM  +G +P+  T+  ++N L
Sbjct: 86  LVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNAL 145

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF------------------------- 278
            K G++ EA    + M++ G+ P+   YN LMD F                         
Sbjct: 146 GKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSV 205

Query: 279 ----------CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
                     C  GRV  A++LF  M  +GC  D ++Y  L+NG  K+  +E A  ++ E
Sbjct: 206 VTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFRE 265

Query: 329 MLSKGIRPTVVTYNT 343
           M+ +G+   +V YN+
Sbjct: 266 MVDRGVAVDLVNYNS 280


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 176/334 (52%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   +K +   G    LY +NIL++ FCK G
Sbjct: 83  LTREHKFWVPFDTCKKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEG 142

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 143 EIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYS 202

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM +     G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 203 VLINGLCKESKIDGANELFDEMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 256

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++ D++TY +LI G C   D  +A+ L  EM  +G++P+ +T+  +++  CK 
Sbjct: 257 KQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKE 316

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A    + MIQ  +R D  VY TL+ G C  GR   A+++   M S G   D  +Y
Sbjct: 317 GDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 376

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK  ++     L  EM   G  P+VVT
Sbjct: 377 TMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G    ++ +  L++  C+ G   VA ++F+ +     ++G+  +P  ++++T+ +G  + 
Sbjct: 123 GYPASLYFFNILMHRFCKEGEIRVARSVFDAIT----KWGL--RPSVVSFNTLMNGYIRL 176

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +D+   L   M    + PDV TY+ LI G C  +  + A  LF EM+D+G+ PN VTF
Sbjct: 177 GDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTF 236

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++  CKNG++D A  + + M+   +  D   YNTL+ G C  G + +A+ L   M  
Sbjct: 237 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRM 296

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G   D  +Y  LI+G CK  ++E A      M+ + IR   V Y T
Sbjct: 297 KGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTT 343


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 174/334 (52%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   +K +   G    LY +NIL++ FCK G
Sbjct: 91  LTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPTSLYFFNILMHRFCKEG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +LI G      + +   L T + A G  PDV+T T
Sbjct: 151 EIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNT 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF EM +     G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 211 VLINGLCKESKMDEANELFNEMLDK----GLV--PNGVTFTTLIDGHCKSGRVDLALEIY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +  +PD++TY +LI G C   D  +A+ L +EM  +G++P+ +T+  +++  CK 
Sbjct: 265 KQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A  L + MI+  +R D   Y  L+ G C  GR   A+++   M S G   +  +Y
Sbjct: 325 GDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++ING+CK  +++ A  L  EM   G  P VVT
Sbjct: 385 TMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G    ++ +  L++  C+ G   +A ++F+ +           +P  ++++T+ +G  + 
Sbjct: 131 GYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCG------LRPSVVSFNTLINGYIRL 184

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +DK   L   M    ++PDV T T LI G C  +  +EA  LF EM+D+G+ PN VTF
Sbjct: 185 GDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTF 244

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++  CK+G++D A  + + M++ G  PD   YNTL+ G C  G + +A++L V M  
Sbjct: 245 TTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSM 304

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G   D  +Y  LI+G CK  ++E A  L   M+ + IR   V Y 
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYT 350



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 95/170 (55%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CKEG +  A+ +F  +    + P VV++ +LI G+    D ++   L   M   GV P+V
Sbjct: 147 CKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDV 206

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T  V++N LCK  KMDEA+ L   M+  G+ P+   + TL+DG C +GRV+ A E++  
Sbjct: 207 YTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQ 266

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M   G   D+ +Y  LI G C+  +++ A  L  EM  KG++P  +TY T
Sbjct: 267 MLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTT 316



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 92/184 (50%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E F   +         T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECFRLTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E+++ G   ++  FN++M+  CK G++  A  + + + + G+RP    +NTL++G+ 
Sbjct: 123 FYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +++   L  +M ++G   DV++  +LING CK  +++ A  L++EML KG+ P  V
Sbjct: 183 RLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 167/334 (50%), Gaps = 22/334 (6%)

Query: 26  CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP 85
           CL     ++    + K +   G  PD  TY  +I   C+  RV   F++   + +    P
Sbjct: 426 CLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNP 485

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D  T+T LI   C    I +A + F ++R+ GC P+V TYT L++   ++     A ++F
Sbjct: 486 DVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIF 545

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM---------------K 190
             M       G  C P+AITYS + DGLCK G + KA E++ K+               K
Sbjct: 546 HRMV------GDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGK 599

Query: 191 D-ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           D + I+P+VVTY +L+ G C A   ++A  L   M+  G +PN + ++ +++  CK G++
Sbjct: 600 DTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEI 659

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  +   M + G  P    Y +L+D     GR++ A ++   M  + C  +V +Y  +
Sbjct: 660 DSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAM 719

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++G CK  E E AL+L S M  KG  P VVTY  
Sbjct: 720 VDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTA 753



 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 170/338 (50%), Gaps = 10/338 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  +   L + K  D    LF+ +  +G+ PD+YTY ILI+ FCK G +      
Sbjct: 450 PDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSW 509

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  +  +P+ VT+T+L+       ++ +A  +F ++    C P+  TY+ LI+GLC+
Sbjct: 510 FDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCK 569

Query: 135 TGHTIVALNLFEEMANGN----------GEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
            G    A  ++ ++   +          G+      P+ +TY  + +GLCK   V  A +
Sbjct: 570 AGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHD 629

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L   M      P+ + Y +L+ GFC   + + A+ +F+ M   G  P+V T+  +++ + 
Sbjct: 630 LLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMF 689

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K+G++D A ++L  M++    P+   Y  ++DG C TG   +A  L   ME  GC  +V 
Sbjct: 690 KDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVV 749

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +Y  LI+G  K  +++  L L+ +M +KG  P  VTY 
Sbjct: 750 TYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYR 787



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 158/332 (47%), Gaps = 15/332 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K +       L   + + G  P+   Y+ L++ FCK+G +     V
Sbjct: 606 PNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEV 665

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+ +  + P   T+TSLI  +  + R+  A  + +++    C P+V TYT +++GLC+
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCK 725

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG T  ALNL   M          C P+ +TY+ + DGL K G VD   ELF++MK +  
Sbjct: 726 TGETEKALNLLSLMEKKG------CSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGC 779

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY  LI   C A   ++A  L  EM        +  +   +    K  +   +  
Sbjct: 780 APNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSK--RFLASLG 837

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF-----VSMESNGCMRDVFSYGIL 309
           LLE M      P A VY  L+D F   GR+  A EL      VS   N   +D+ +   L
Sbjct: 838 LLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTS--L 895

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           I   C + ++E A++LYSEM  +GI P +  +
Sbjct: 896 IQALCLSSQVEEAVALYSEMRRRGIVPDLSAF 927



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 162/356 (45%), Gaps = 33/356 (9%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV-S 69
           +PSP     FN L       + Y     LF R+N+ G  P    YNI I   C    + +
Sbjct: 338 NPSPSL---FNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPN 394

Query: 70  PGFVVLGR------ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           P  + L        ++ SC   + +   +  + LC   +  +A  +  ++   G  PD  
Sbjct: 395 PELLDLAEKVYEEMLVASCVL-NKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDAS 453

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TYT +I  LC+      A  LF+EM        V   PD  TY+ + D  CK G +++A+
Sbjct: 454 TYTKVITFLCQAKRVDKAFLLFQEMKK------VGVNPDVYTYTILIDSFCKAGLIEQAQ 507

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
             F +M+    +P+VVTYT+L+  +  +    +A  +F  M+     PN +T++ +++ L
Sbjct: 508 SWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGL 567

Query: 244 CKNGKMDEASRLLELMIQIG----------------VRPDASVYNTLMDGFCLTGRVNRA 287
           CK G++ +A  +   +I                   + P+   Y  L++G C   +V+ A
Sbjct: 568 CKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDA 627

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L  +M + GC  +   Y  L++G+CK  EI+ A  ++  M   G  P+V TY +
Sbjct: 628 HDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTS 683



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 156/362 (43%), Gaps = 28/362 (7%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F + +R +   P V ++  L     K K       +   + + G  P    +N L++ +C
Sbjct: 293 FLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYC 352

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME------AAALFTKLRAFG 117
                +  + +  R+      P  V +   I  +C    +        A  ++ ++    
Sbjct: 353 NAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVAS 412

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           C  +          LC  G    A  + +EM       G V  PDA TY+ +   LC+  
Sbjct: 413 CVLNKINTANFARCLCGVGKFEKAFQIVKEMMRK----GFV--PDASTYTKVITFLCQAK 466

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            VDKA  LF +MK   +NPDV TYT LI  FC A    +A+  F EM   G  PNVVT+ 
Sbjct: 467 RVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYT 526

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--- 294
            +++   K+ ++ +A+ +   M+     P+A  Y+ L+DG C  G + +A E++  +   
Sbjct: 527 ALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGT 586

Query: 295 -------------ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                        +++    +V +YG L+NG CK +++  A  L   ML+ G  P  + Y
Sbjct: 587 SDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVY 646

Query: 342 NT 343
           + 
Sbjct: 647 DA 648



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 141/352 (40%), Gaps = 50/352 (14%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           +   L    RL   G  P   TYN L+      G+V   F V   +  S F  D  T  S
Sbjct: 185 WGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGS 244

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
             + LC E R  +A  L  +   F  K D    T +I+GL        A++    M   +
Sbjct: 245 FAQALCKEGRWGDALDLLER-EDF--KLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNS 301

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   P+ +TY T+  G  K+  +   K +   M  E  NP    + SL+  +C A 
Sbjct: 302 ------YIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAE 355

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN-------------------------- 246
           D+  A  LF  M   G  P  V +N+ +  +C                            
Sbjct: 356 DYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVL 415

Query: 247 ---------------GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
                          GK ++A ++++ M++ G  PDAS Y  ++   C   RV++A  LF
Sbjct: 416 NKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLF 475

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M+  G   DV++Y ILI+ +CK   IE A S + EM S G  P VVTY  
Sbjct: 476 QEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTA 527



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 142/333 (42%), Gaps = 28/333 (8%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           ++  +S   R+      P++ TY  L+  F K  ++     ++  ++     P    F S
Sbjct: 287 FNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNS 346

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI------VALNLFE 146
           L+   C       A  LF ++   GC P    Y   I  +C            +A  ++E
Sbjct: 347 LVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYE 406

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM   +      C  + I  +     LC  G  +KA ++  +M  +   PD  TYT +I 
Sbjct: 407 EMLVAS------CVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVIT 460

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
             C A   ++A  LF EM   GV P+V T+ ++++  CK G +++A    + M   G  P
Sbjct: 461 FLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSP 520

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           +   Y  L+  +  + ++ +A ++F  M  + C  +  +Y  LI+G CK  EI+ A  +Y
Sbjct: 521 NVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVY 580

Query: 327 SEML----------------SKGIRPTVVTYNT 343
           ++++                +  I P VVTY  
Sbjct: 581 AKLIGTSDNIESDFYFEGKDTDTISPNVVTYGA 613



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 42/286 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   + K+   D  + +  ++      P++ TY  +++  CK G       +
Sbjct: 676 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNL 735

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +   +P+ VT+T+LI GL    ++     LF +++  GC P+  TY  LIN  C 
Sbjct: 736 LSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCA 795

Query: 135 TGHT---------------------------------IVALNLFEEMANGNGEFGVVCKP 161
            G                                   + +L L EEM + +        P
Sbjct: 796 AGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHD------TAP 849

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT---YTSLIRGFCYANDWNEAK 218
            A  Y  + D   K G ++ A EL  +M + + + ++ +   +TSLI+  C ++   EA 
Sbjct: 850 IAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAV 909

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
            L+ EM  +G+ P++  F  ++  L +  K +EA +L   + Q GV
Sbjct: 910 ALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQEGV 955



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 111/263 (42%), Gaps = 26/263 (9%)

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VLGR+L             L++  C +    EA     +L+ FG +P   TY  L+  L 
Sbjct: 167 VLGRLL-----------NVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLA 215

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G   +A  + +EM+         C  D  T  +    LCKEG    A +L   ++ E+
Sbjct: 216 SAGQVEMAFRVQKEMSASG-----FCM-DRSTVGSFAQALCKEGRWGDALDL---LERED 266

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              D V  T +I G   A+ +NEA      M      PNVVT+  ++    K  ++    
Sbjct: 267 FKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCK 326

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R++ +M+  G  P  S++N+L+  +C       A +LF  M + GC      Y I I   
Sbjct: 327 RIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSI 386

Query: 314 CKNKEIEG------ALSLYSEML 330
           C  +E+        A  +Y EML
Sbjct: 387 CGREELPNPELLDLAEKVYEEML 409



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 8/171 (4%)

Query: 177 GFVDKAK--ELFLKMKDENINPDVV--TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           GF D A+  E  L+   E+ + DV+      L+R  C    W EA      + D G +P+
Sbjct: 145 GFEDPARTAERLLREIGED-DRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPS 203

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
            VT+N ++  L   G+++ A R+ + M   G   D S   +     C  GR   A +L  
Sbjct: 204 AVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDALDL-- 261

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +E      D      +I+G  +      A+S    M      P VVTY T
Sbjct: 262 -LEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRT 311


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 169/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   +RA G +PDV+TY+ LINGLC+      A  LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFG 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G +D A +++ +M ++  +PDVVTY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A  L E MI+  +R 
Sbjct: 285 GLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D  VY  L+ G C  GR   A+++   M   G   D  +Y +++N +CK  +++ A  L 
Sbjct: 345 DDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P VVT
Sbjct: 405 REMQRNGRVPCVVT 418



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 156/285 (54%), Gaps = 6/285 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ESR+ EA  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A++++ +M N          PD +TY+T+  GLCK+G + +A+ L  +M  + 
Sbjct: 253 KNGRLDLAMDIYRQMLNQG------FSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A  L   M+ + ++ + V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++L  M+++G++PD   Y  +M+ FC  G V +A EL   M+ NG
Sbjct: 367 KMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNG 411



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 137/252 (54%), Gaps = 6/252 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K    D    L   + + G+ PD+YTY++LIN  CK  R+     +
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G +L +   P+ VTFT+LI G C   R+  A  ++ ++   G  PDV TY TLI GLC+
Sbjct: 229 FGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCK 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L +EM+          KPD ITY+T+ DG CKEG ++ A EL  +M  E+I
Sbjct: 289 KGDLKQARYLLDEMSRKG------LKPDKITYTTLIDGSCKEGDLETAFELRERMIKESI 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V YT+LI G C      +A+ +  EM+  G++P+  T+ +IMNE CK G + +AS 
Sbjct: 343 RLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASE 402

Query: 255 LLELMIQIGVRP 266
           LL  M + G  P
Sbjct: 403 LLREMQRNGRVP 414



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 142/291 (48%), Gaps = 6/291 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D+Y ++ LI  + + G +           +  F     T  ++++ L            +
Sbjct: 65  DIYVFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFY 124

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++   G    ++ +  L++  C+ G   +A ++F+ +     ++G+  +P  ++++T+ 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAIT----KWGL--RPSVVSFNTLM 178

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +G  K G +D+   L   M+   + PDV TY+ LI G C  +  +EA  LF EM+D G+ 
Sbjct: 179 NGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLV 238

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN VTF  +++  CKNG++D A  +   M+  G  PD   YNTL+ G C  G + +A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYL 298

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              M   G   D  +Y  LI+G CK  ++E A  L   M+ + IR   V Y
Sbjct: 299 LDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVY 349



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 98/171 (57%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CKEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M   GVQP+
Sbjct: 146 FCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPD 205

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V T++V++N LCK  +MDEA+ L   M+  G+ P+   + TL+DG C  GR++ A +++ 
Sbjct: 206 VYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYR 265

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M + G   DV +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 266 QMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTT 316



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTITD 171
           +Y T+I+ LC     + A +L + + +  G+      F  +       + D   +S +  
Sbjct: 15  SYCTMIHFLCTHQMFLEAKSLIQTVVSRKGKDSASAVFAAILETKGTQRSDIYVFSGLIT 74

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E F   K  +      T  +++        +      + E+++ G   
Sbjct: 75  AYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEILECGYPA 134

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+  CK G+M  A  + + + + G+RP    +NTLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +M ++G   DV++Y +LING CK   ++ A  L+ EML  G+ P  VT+ T
Sbjct: 195 NAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTT 246



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R    P  + ++  L     K    +T   L +R+    +  D   Y  LI   
Sbjct: 298 LLDEMSRKGLKPDKI-TYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGL 356

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR      +L  +LR    PD  T+T ++   C +  + +A+ L  +++  G  P V
Sbjct: 357 CQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVPCV 416

Query: 123 FT 124
            T
Sbjct: 417 VT 418


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 174/353 (49%), Gaps = 35/353 (9%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++L G L K + +         +  +G  P++ +YN +I+ +   G +     +L  + 
Sbjct: 182 FDLLEGKLKKAREF------IGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMR 235

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                PD+ T+ SLI G+C E R+ EA+ LF K+   G  P+  TY TLI+G C  G   
Sbjct: 236 VKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLE 295

Query: 140 VALNLFEEMANGN---------------------GEFGVVCK--------PDAITYSTIT 170
            A +  +EM                         GE   + K        PDAITY+ + 
Sbjct: 296 RAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILI 355

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +G  + G   +A +L  +M  + I P  VTYTSLI      N   EA  LF +++DQGV 
Sbjct: 356 NGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 415

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+V+ FN +++  C NG ++ A  LL+ M +  V PD   +NTLM G C  G+V  A+ L
Sbjct: 416 PDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARML 475

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M+  G   D  SY  LI+GY +  +I+ A  +  EMLS G  PT++TYN 
Sbjct: 476 LDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNA 528



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 169/339 (49%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I D M R+    P   ++  L   + K    +    LF ++  IGL P+  TYN LI+ +
Sbjct: 230 ILDAM-RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY 288

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +   F     +++    P   T+  L+  L  E R+ EA  +  ++R  G  PD 
Sbjct: 289 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA 348

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LING  R G+   A +L  EM +   E      P  +TY+++   L +   + +A
Sbjct: 349 ITYNILINGYSRCGNAKRAFDLHNEMLSKGIE------PTHVTYTSLIYVLSRRNRMKEA 402

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +LF K+ D+ ++PDV+ + ++I G C   +   A  L  EM  + V P+ VTFN +M  
Sbjct: 403 DDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 462

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ GK++EA  LL+ M   G++PD   YNTL+ G+   G +  A  +   M S G    
Sbjct: 463 RCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPT 522

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +Y  LI   CKN+E + A  L  EM++KGI P   TY
Sbjct: 523 LLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTY 561



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 137/264 (51%), Gaps = 6/264 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L           + K +   G+ PD  TYNILIN + + G     F +
Sbjct: 311 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDL 370

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P  VT+TSLI  L   +R+ EA  LF K+   G  PDV  +  +I+G C 
Sbjct: 371 HNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCA 430

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L +EM   +        PD +T++T+  G C+EG V++A+ L  +MK   I
Sbjct: 431 NGNVERAFMLLKEMDRKS------VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGI 484

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD ++Y +LI G+    D  +A  +  EM+  G  P ++T+N ++  LCKN + D A  
Sbjct: 485 KPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 544

Query: 255 LLELMIQIGVRPDASVYNTLMDGF 278
           LL+ M+  G+ PD S Y +L++G 
Sbjct: 545 LLKEMVNKGISPDDSTYLSLIEGM 568



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 53/119 (44%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN L     +    +    L   +   G+ PD  +YN LI+ + + G +   F 
Sbjct: 450 PPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFX 509

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           V   +L   F P  +T+ +LIK LC       A  L  ++   G  PD  TY +LI G+
Sbjct: 510 VRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 568


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + N L     K    +    L+  +  + +   +YT+NI+IN  CK G++      
Sbjct: 184 PTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDF 243

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +G +  S   P+ VT+ +++ G C+  R+  A A+ T ++    +PD FTY +LI+G+C+
Sbjct: 244 VGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCK 303

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +FEEM           +P A+ Y+T+ DG C +G +D A     +M  + I
Sbjct: 304 QGRLEEASKIFEEMVQKG------LRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGI 357

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P + TY SLI         +EA+C+  E+ ++G+ P+ +T+N+++N  C+     +A  
Sbjct: 358 SPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFL 417

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+  G++P    Y +L+       R+  A +LF  + S G + D   +  LI+G+C
Sbjct: 418 LHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHC 477

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            N  ++GA  L  +M    + P  VT+NT
Sbjct: 478 SNSNVKGAFELLKDMDRMKVPPDEVTFNT 506



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 178/372 (47%), Gaps = 44/372 (11%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           + LR+  S   V +FNI+   L K             + + G+ P++ TYN +++ +C  
Sbjct: 213 FRLRIKSS---VYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           GRV     +L  + R    PD+ T+ SLI G+C + R+ EA+ +F ++   G +P    Y
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            TLI+G C  G+  +A    +EM            P   TY+++   L  E   D+A+ +
Sbjct: 330 NTLIDGFCNKGNLDMASAYKDEMLKKG------ISPTMSTYNSLIHALFMEQRTDEAECM 383

Query: 186 FLKMKDENINPDVVTYTSLIRGFCY----------------------------------- 210
             +++++ I+PD +TY  LI G+C                                    
Sbjct: 384 IKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSK 443

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
            N   EA  LF ++  +GV P+ + FN +++  C N  +  A  LL+ M ++ V PD   
Sbjct: 444 KNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVT 503

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           +NT+M G C  G+V  A+ELF  M+  G   D  S+  LI+GY +  +I+ A  + +EML
Sbjct: 504 FNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEML 563

Query: 331 SKGIRPTVVTYN 342
             G  PTV+TYN
Sbjct: 564 DTGFNPTVLTYN 575



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 161/330 (48%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   + K    +    +F+ +   GL P    YN LI+ FC  G +      
Sbjct: 289 PDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAY 348

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+   +P   T+ SLI  L  E R  EA  +  +++  G  PD  TY  LING CR
Sbjct: 349 KDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             +   A  L +EM A+G        KP   TY+++   L K+  + +A +LF K+  E 
Sbjct: 409 CANAKKAFLLHDEMLASG-------IKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEG 461

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD + + +LI G C  ++   A  L  +M    V P+ VTFN IM   C+ GK++EA 
Sbjct: 462 VLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAR 521

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + M + G++PD   +NTL+ G+   G +  A  +   M   G    V +Y  L+ G 
Sbjct: 522 ELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CKN+E + A  L  EM+SKG+ P   TY T
Sbjct: 582 CKNQEGDLAEELLKEMVSKGMTPDDTTYFT 611



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 147/275 (53%), Gaps = 7/275 (2%)

Query: 5   DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           D ML+   SP  + ++N L   L   +  D    + K +   G+ PD  TYNILIN +C+
Sbjct: 350 DEMLKKGISPT-MSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
                  F++   +L S   P   T+TSL+  L  ++R+ EA  LF K+ + G  PD   
Sbjct: 409 CANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIM 468

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           +  LI+G C   +   A  L ++M        +   PD +T++TI  G C+EG V++A+E
Sbjct: 469 FNALIDGHCSNSNVKGAFELLKDMDR------MKVPPDEVTFNTIMQGHCREGKVEEARE 522

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           LF +MK   I PD +++ +LI G+    D  +A  +  EM+D G  P V+T+N ++  LC
Sbjct: 523 LFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLC 582

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           KN + D A  LL+ M+  G+ PD + Y TL++G  
Sbjct: 583 KNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIA 617



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 142/295 (48%), Gaps = 6/295 (2%)

Query: 49  FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108
           F     ++ LI   C M R    F     +      P   T  SL+      +R   A  
Sbjct: 148 FKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWV 207

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           L+ ++     K  V+T+  +IN LC+ G    A +    M       GV  KP+ +TY+T
Sbjct: 208 LYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETS----GV--KPNIVTYNT 261

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           I  G C  G V+ A  +   MK + I PD  TY SLI G C      EA  +F EM+ +G
Sbjct: 262 IVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKG 321

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           ++P+ V +N +++  C  G +D AS   + M++ G+ P  S YN+L+    +  R + A+
Sbjct: 322 LRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAE 381

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +   ++  G   D  +Y ILINGYC+    + A  L+ EML+ GI+PT  TY +
Sbjct: 382 CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTS 436



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 7/218 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D ML     P    ++  L   L+K         LFK++ S G+ PD   +N LI+
Sbjct: 416 FLLHDEMLASGIKPTKK-TYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALID 474

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C    V   F +L  + R    PD VTF ++++G C E ++ EA  LF +++  G KP
Sbjct: 475 GHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKP 534

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  ++ TLI+G  R G    A  +  EM +          P  +TY+ +  GLCK    D
Sbjct: 535 DHISFNTLISGYSRRGDIKDAFRVRNEMLDTG------FNPTVLTYNALVQGLCKNQEGD 588

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
            A+EL  +M  + + PD  TY +LI G    N  +E K
Sbjct: 589 LAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENK 626


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 172/339 (50%), Gaps = 9/339 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKM 65
           +LR  P P  V ++N +             L + + +   G + P+ YTY  +I+ +CK+
Sbjct: 136 LLRQMPRPNAV-TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 194

Query: 66  GRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
           GRV     V   +L +    P+AV + +LI G C + ++  A     ++   G    V T
Sbjct: 195 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 254

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  L++ L   G    A  L EEM  G G       PD  TY+ + +G CKEG V KA E
Sbjct: 255 YNLLVHALFMDGRGTEAYELVEEMG-GKG-----LAPDVFTYNILINGHCKEGNVKKALE 308

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +F  M    +   VVTYT+LI          E   LF E + +G++P++V +N ++N   
Sbjct: 309 IFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 368

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
            +G +D A  ++  M +  + PD   YNTLM G CL GRV+ A++L   M   G   D+ 
Sbjct: 369 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLV 428

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +Y  LI+GY    +++ AL + +EM++KG  PT++TYN 
Sbjct: 429 TYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 467



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 140/263 (53%), Gaps = 6/263 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+L   L  +        L + +   GL PD++TYNILIN  CK G V     +  
Sbjct: 252 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 311

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + R       VT+T+LI  L  + ++ E   LF +    G +PD+  Y  LIN    +G
Sbjct: 312 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 371

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +   A  +  EM            PD +TY+T+  GLC  G VD+A++L  +M +  I P
Sbjct: 372 NIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP 425

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D+VTY +LI G+    D  +A  +  EMM++G  P ++T+N ++  LCKNG+ D+A  ++
Sbjct: 426 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 485

Query: 257 ELMIQIGVRPDASVYNTLMDGFC 279
           + M++ G+ PD S Y +L++G  
Sbjct: 486 KEMVENGITPDDSTYISLIEGLT 508



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 179/400 (44%), Gaps = 76/400 (19%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI----------------------GL 48
           H    P    N+L    A  + + T L L+ R+ S+                       L
Sbjct: 42  HLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAPAFAL 101

Query: 49  FPDLY---------TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F D++         T+NI++   C  G+ +        +LR    P+AVT+ ++I G C+
Sbjct: 102 FADMFRLRLPLCTTTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCS 157

Query: 100 ESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             R+  A  +  ++R  G   P+ +TY T+I+G C+ G    A+ +F+EM    GE    
Sbjct: 158 RGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLT-KGE---- 212

Query: 159 CKPDAITYSTITDGLCKEGFVD-----------------------------------KAK 183
            KP+A+ Y+ +  G C +G +D                                   +A 
Sbjct: 213 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 272

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL  +M  + + PDV TY  LI G C   +  +A  +F  M  +GV+  VVT+  ++  L
Sbjct: 273 ELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYAL 332

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G++ E  +L +  ++ G+RPD  +YN L++    +G ++RA E+   ME      D 
Sbjct: 333 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 392

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  L+ G C    ++ A  L  EM  +GI+P +VTYNT
Sbjct: 393 VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNT 432



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 6/316 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ML      P    +N L G        DT L    R+   G+   + TYN+L++  
Sbjct: 203 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 262

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              GR +  + ++  +      PD  T+  LI G C E  + +A  +F  +   G +  V
Sbjct: 263 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 322

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LI  L + G       LF+E            +PD + Y+ + +     G +D+A
Sbjct: 323 VTYTALIYALSKKGQVQETDKLFDEAVRRG------IRPDLVLYNALINSHSTSGNIDRA 376

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+  +M+ + I PD VTY +L+RG C     +EA+ L  EM ++G+QP++VT+N +++ 
Sbjct: 377 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISG 436

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
               G + +A R+   M+  G  P    YN L+ G C  G+ + A+ +   M  NG   D
Sbjct: 437 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 496

Query: 303 VFSYGILINGYCKNKE 318
             +Y  LI G     E
Sbjct: 497 DSTYISLIEGLTTEDE 512


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 179/354 (50%), Gaps = 47/354 (13%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           K    D    L   +   G+  D+  ++ LI   C+ GR+         +   C +P+ +
Sbjct: 11  KAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEEC-SPNVI 69

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLR-----AFGCKPDVFTYTTLINGLCRTGHTIVALN 143
           T+ +++ GLC  +RI E   LF  +      + GC+PDV +Y+T+I+ LC+      A  
Sbjct: 70  TYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYE 129

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
            F+ M        V C P+ +TYS++ DGLCK   VD+A  L +++K E++ P  + Y +
Sbjct: 130 YFKRMR------AVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNA 183

Query: 204 LIRGF----------------------------------CYANDWNEAKCLFIE-MMDQG 228
           ++ GF                                   + ND  E  C F E ++  G
Sbjct: 184 VVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSG 243

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
            +PNVVT+NV ++ LCK GK+DEA R+L  M++  V PD   Y++++DGFC  GR+++A 
Sbjct: 244 KKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKAD 303

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++F  M  + C+    ++  L++G+ ++K+   A  ++ +M++ G  P + TYN
Sbjct: 304 DVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYN 357



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 161/324 (49%), Gaps = 37/324 (11%)

Query: 55  YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR 114
           Y  +IN FCK G+V   F +L  +       D +  ++LI+GLC + RI EA   F  + 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM- 60

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
              C P+V TY T++NGLC+       L LF++M     E    C+PD I+YST+ D LC
Sbjct: 61  GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEK-RYEASHGCEPDVISYSTVIDALC 119

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA----------------- 217
           K   VDKA E F +M+     P+VVTY+SLI G C  +  +EA                 
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAM 179

Query: 218 ----------------KC--LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
                           +C  L + M ++G   N++ FN +++ L KN + ++A +  E +
Sbjct: 180 YYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL 239

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           ++ G +P+   YN  + G C  G+V+ A  + + M  +    DV +Y  +I+G+CK   +
Sbjct: 240 LKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRM 299

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           + A  +++ M+     P  VT+ T
Sbjct: 300 DKADDVFTRMMVHECIPHPVTFMT 323



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 161/346 (46%), Gaps = 25/346 (7%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           +  FN +   L KN   +     F+RL   G  P++ TYN+ ++  CK G+V   + +L 
Sbjct: 213 IIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILL 272

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++ S  TPD +T++S+I G C   R+ +A  +FT++    C P   T+ TL++G     
Sbjct: 273 EMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHK 332

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            +  A  + E+M N     G +  P   TY+ + D +C    V+ A E++ KMK +   P
Sbjct: 333 KSREAFRVHEDMVNA----GFI--PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQP 386

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN--------------- 241
           D  TY  LI+  C A   +EAK     M    V PN    + ++                
Sbjct: 387 DANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVL 446

Query: 242 ----ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
               E+CK G+ DEA  ++E M+  GVRPD + Y  ++   C   RV+ A   F  M S 
Sbjct: 447 DNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASR 506

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           GC   + +Y +LI   C     + A  ++  M++ G  P   T  T
Sbjct: 507 GCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRT 552



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 157/356 (44%), Gaps = 34/356 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLN-----SIGLFPDLYTYNILINCFCKMGRVS 69
           P V ++N +   L K    D  L LF  +      S G  PD+ +Y+ +I+  CK  RV 
Sbjct: 66  PNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVD 125

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
             +    R+      P+ VT++SLI GLC   R+ EA +L  +L+     P    Y  ++
Sbjct: 126 KAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVV 185

Query: 130 NGLCRTGHTIVALNLFEEMANG------------------NGEFGVVC-----------K 160
           NG  R G     L L   M                     N E    C           K
Sbjct: 186 NGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKK 245

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P+ +TY+    GLCK G VD+A  + L+M +  + PDV+TY+S+I GFC A   ++A  +
Sbjct: 246 PNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDV 305

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           F  MM     P+ VTF  +++   ++ K  EA R+ E M+  G  P    YN LMD  C 
Sbjct: 306 FTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCG 365

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
              V  A E++  M+      D  +Y  LI   C+ + ++ A      M +  + P
Sbjct: 366 ADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVP 421



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 172/397 (43%), Gaps = 64/397 (16%)

Query: 3   IFDYMLRM----HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNIL 58
           +FD M +     H   P V S++ +   L K +  D     FKR+ ++G  P++ TY+ L
Sbjct: 90  LFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSL 149

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME------------- 105
           I+  CK+ RV   + +L ++      P A+ + +++ G   + +  E             
Sbjct: 150 IDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGF 209

Query: 106 ----------------------AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
                                 A   F +L   G KP+V TY   ++GLC+ G    A  
Sbjct: 210 GINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYR 269

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           +  EM            PD ITYS+I DG CK G +DKA ++F +M      P  VT+ +
Sbjct: 270 ILLEMVESK------VTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMT 323

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+ GF       EA  +  +M++ G  P + T+NV+M+ +C    ++ A  +   M +  
Sbjct: 324 LLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKK 383

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            +PDA+ Y  L+   C   RV+ AKE    ME++  + +      L+   CK  E++ A 
Sbjct: 384 RQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEAC 443

Query: 324 SLY-------------------SEMLSKGIRPTVVTY 341
           S+                     +M+ KG+RP   TY
Sbjct: 444 SVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATY 480



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 117/272 (43%), Gaps = 23/272 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+     P PV    +L G  +++K       + + + + G  P L TYN+L++C 
Sbjct: 305 VFTRMMVHECIPHPVTFMTLLHG-FSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C    V     +  ++ R    PDA T+  LI+ LC   R+ EA      + A    P+ 
Sbjct: 364 CGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 423

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
                L+  LC+ G    A ++ + +                        +CK G  D+A
Sbjct: 424 AICHALVEVLCKQGEVDEACSVLDNVVE----------------------ICKAGEPDEA 461

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+  +M  + + PD  TY +++R  C  +  + A   F +M  +G  P +VT+ +++ E
Sbjct: 462 VEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGE 521

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            C     D+A R+ E M+  G  P A    TL
Sbjct: 522 ACSADMADDAFRIFEAMVAAGFTPQAQTMRTL 553



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
           +Y T+++GFC  G+V++A EL   M+  G   DV  +  LI G C+   I+ AL  +  M
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 330 LSKGIRPTVVTYNT 343
             +   P V+TYNT
Sbjct: 61  -GEECSPNVITYNT 73


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 176/344 (51%), Gaps = 13/344 (3%)

Query: 4   FDYMLRMHPSPPPVCSF--NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL--YTYNILI 59
           F ++ R H       +F  N L   L K + +     +F R   +G   D    TYN LI
Sbjct: 54  FRWVTRSHRGESIHNNFTCNCLLRTLVKARRHHQAYQIF-RDELLGQHCDTNHITYNTLI 112

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
             FCK G +   F +L  +     +PD VT +S+++ LC    +  A   F +  +  C 
Sbjct: 113 GGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRE--SVECA 170

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD   +  L++GLC+      A  + EEM+    E G+V  PD +TY+++ DGLCK   +
Sbjct: 171 PDSVLFNILVHGLCKANQLSEARQMIEEMS----ERGIV--PDVVTYNSLIDGLCKSYRM 224

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           ++A++L   M    + P++VTY +LI G+C       A  L   M+  G  P+VVTFN +
Sbjct: 225 EEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSL 284

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+  K+D+A  +L LM +    P+   YN L+ G C  GR N A EL   M+  G 
Sbjct: 285 ISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGI 344

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + D+ +Y  LI  +C+N +IE A  + + M+ +G+ P  ++Y T
Sbjct: 345 LPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCT 388



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 173/364 (47%), Gaps = 43/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + + +   L    +    +  F+   S+   PD   +NIL++  CK  ++S    +
Sbjct: 138 PDVVTHSSIVQALCNTGNLSRAMQYFR--ESVECAPDSVLFNILVHGLCKANQLSEARQM 195

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PD VT+ SLI GLC   R+ EA  L   +     +P++ TY TLI G C+
Sbjct: 196 IEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCK 255

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG T +A  L E M            PD +T++++  G C++  +DKA E+   MK    
Sbjct: 256 TGCTGLAHQLIERMIQSGTH------PDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLC 309

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++VTY  LI G C A   NEA  L  EM  +G+ P+++T+N ++   C+N ++++A +
Sbjct: 310 APNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQ 369

Query: 255 LLELMIQIGVRPDASVY-----------------------------------NTLMDGFC 279
           +  LM++ GV PD   Y                                   N+LM+G C
Sbjct: 370 IQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLC 429

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            + R++ A+ L   M   GC     +Y +L+ G CK   ++ A  +   M+S+GI+P V 
Sbjct: 430 CSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVS 489

Query: 340 TYNT 343
           +  T
Sbjct: 490 SSGT 493



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 169/326 (51%), Gaps = 9/326 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K+   +    L + +    + P+L TYN LI  +CK G       +
Sbjct: 206 PDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQL 265

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + R+++S   PD VTF SLI G C +S+I +A  +   ++   C P++ TY  LI+GLC 
Sbjct: 266 IERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCD 325

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  EM +G G       PD ITY+++    C+   +++A ++   M +  +
Sbjct: 326 AGRANEACELLSEM-DGRGIL-----PDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGV 379

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD ++Y +L      +  ++EA  L   M D G  PN+ TFN +M  LC + ++DEA  
Sbjct: 380 IPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARH 439

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL +M ++G  P AS Y  L+ G C  GRV+ AKE+ V M S G    V S G +++   
Sbjct: 440 LLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLA 499

Query: 315 KNKEIEGALSLYSEML---SKGIRPT 337
           +  + + AL  + +++   SK   P+
Sbjct: 500 REGKQDLALHYFDQVVAAESKACDPS 525



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 29/291 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     K         L +R+   G  PD+ T+N LI+ FC+  ++     V
Sbjct: 241 PNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEV 300

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    P+ VT+  LI GLC   R  EA  L +++   G  PD+ TY +LI   CR
Sbjct: 301 LHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCR 360

Query: 135 T-----------------------GHTIVALNLF------EEMANGNGEFGVVCKPDAIT 165
                                    +  +A+ L       E  A  +  F     P+  T
Sbjct: 361 NFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFT 420

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++++ +GLC    +D+A+ L   M+    +P   TY  L+ G C A   ++AK + + M+
Sbjct: 421 FNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMV 480

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
            +G+QP V +   I++ L + GK D A    + ++    +     Y  L++
Sbjct: 481 SEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPSYQKLLE 531



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 6/205 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C   ++++     P + ++N+L   L      +    L   ++  G+ PD+ TYN LI  
Sbjct: 298 CEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGI 357

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FC+  ++   F +   ++     PD +++ +L   L    R  EA AL   +   G  P+
Sbjct: 358 FCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPN 417

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           +FT+ +L+ GLC +     A +L   M        V C P A TY  +  GLCK G VD 
Sbjct: 418 LFTFNSLMEGLCCSRRLDEARHLLAVMRR------VGCDPAASTYEVLVTGLCKAGRVDD 471

Query: 182 AKELFLKMKDENINPDVVTYTSLIR 206
           AKE+ + M  E I P V +  +++ 
Sbjct: 472 AKEVLVMMVSEGIQPLVSSSGTIVH 496


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 183/356 (51%), Gaps = 21/356 (5%)

Query: 3   IFDYMLRMHPS---------------PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG 47
           + D M++++P+               P  V  FNIL     K  +      +F  +    
Sbjct: 211 LLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRS 270

Query: 48  LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA 107
           L P + ++N LIN +CK+G +  GF +  ++ +S   PD  T+++LI  LC E+++  A 
Sbjct: 271 LQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAH 330

Query: 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
            LF ++   G  P+   +TTLI+G  R G   +    +++M +         +PD + Y+
Sbjct: 331 GLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKG------LQPDIVLYN 384

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           T+ +G CK G +  A+ +   M    + PD +TYT+LI GFC   D   A  +  EM   
Sbjct: 385 TLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQN 444

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G++ + V F+ ++  +CK G++ +A R L  M++ G++PD   Y  +MD FC  G     
Sbjct: 445 GIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTG 504

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L   M+S+G +  V +Y +L+NG CK  +++ A  L   ML+ G+ P  +TYNT
Sbjct: 505 FKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNT 560



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 145/285 (50%), Gaps = 9/285 (3%)

Query: 60  NCFCKMGRVSPGFVVLG---RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           N   +M +++P   + G    IL + F  +   F  L+   C E  I +A  +F ++   
Sbjct: 210 NLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKR 269

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
             +P V ++ TLING C+ G+      L  +M           +PD  TYS + + LCKE
Sbjct: 270 SLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSR------TRPDVFTYSALINALCKE 323

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
             +D A  LF +M    + P+ V +T+LI G     + +  K  + +M+ +G+QP++V +
Sbjct: 324 NKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLY 383

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N ++N  CKNG +  A  +++ MI+ G+RPD   Y TL+DGFC  G V  A E+   M+ 
Sbjct: 384 NTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQ 443

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           NG   D   +  L+ G CK   +  A     EML  GI+P  VTY
Sbjct: 444 NGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTY 488



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 143/297 (48%), Gaps = 9/297 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L K    D    LF  +   GL P+   +  LI+   + G +      
Sbjct: 308 PDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKES 367

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L     PD V + +L+ G C    ++ A  +   +   G +PD  TYTTLI+G CR
Sbjct: 368 YQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCR 427

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL + +EM     E       D + +S +  G+CKEG V  A+    +M    I
Sbjct: 428 GGDVETALEIRKEMDQNGIEL------DRVGFSALVCGMCKEGRVIDAERALREMLRAGI 481

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTYT ++  FC   D      L  EM   G  P+VVT+NV++N LCK G+M  A  
Sbjct: 482 KPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADM 541

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           LL+ M+ IGV PD   YNTL++G     R   + + ++     G + D+ SY  ++N
Sbjct: 542 LLDAMLNIGVVPDDITYNTLLEGH---HRHANSSKRYIQKPEIGIVADLASYKSIVN 595



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 148/302 (49%), Gaps = 6/302 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K  + D    L  ++      PD++TY+ LIN  CK  ++     +
Sbjct: 273 PTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGL 332

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+ V FT+LI G      I      + K+ + G +PD+  Y TL+NG C+
Sbjct: 333 FDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCK 392

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A N+ + M           +PD ITY+T+ DG C+ G V+ A E+  +M    I
Sbjct: 393 NGDLVAARNIVDGMIRRG------LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGI 446

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V +++L+ G C      +A+    EM+  G++P+ VT+ ++M+  CK G      +
Sbjct: 447 ELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFK 506

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M   G  P    YN L++G C  G++  A  L  +M + G + D  +Y  L+ G+ 
Sbjct: 507 LLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHH 566

Query: 315 KN 316
           ++
Sbjct: 567 RH 568


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 160/313 (51%), Gaps = 10/313 (3%)

Query: 36  VLSLFKRLNSIG-----LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
            ++LF R  S       L P  YTY IL++C  +  R        G++LR+    DA+  
Sbjct: 56  AVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIA 115

Query: 91  TSLIKGLCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           + L+KG C   R  EA   L  +    GC PDVF+Y  L+  LC  G +  A NL   MA
Sbjct: 116 SHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMA 175

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
            G    G VC PD + Y+T+ DG  KEG V+KA +LF +M    I PD+VTY S++   C
Sbjct: 176 EG----GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALC 231

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            A   ++A+    +M+++ V PN  T+N ++      G+  EA R+ + M +  + PD  
Sbjct: 232 KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVV 291

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
             + LM   C  G++  A+++F +M   G   DVFSY I++NGY     +     L+  M
Sbjct: 292 TLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLM 351

Query: 330 LSKGIRPTVVTYN 342
           L  GI P   T+N
Sbjct: 352 LGDGIAPDFYTFN 364



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 11/283 (3%)

Query: 5   DYMLRMHPSPPPVCS-----FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           D +LRM      VCS     +N +     K    +    LFK +   G+ PDL TYN ++
Sbjct: 168 DNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVV 227

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +  CK   +      L +++     P+  T+ +LI G  +  +  EA  +F ++R     
Sbjct: 228 HALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSIL 287

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PDV T + L+  LC+ G    A ++F+ MA   G+      PD  +Y+ + +G   +G +
Sbjct: 288 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAM-KGQ-----NPDVFSYNIMLNGYATKGCL 341

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
               +LF  M  + I PD  T+   I+ +      ++A  +F EM D GV+P+VVT+  +
Sbjct: 342 VDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 401

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           +  LC+ GKMD+A      MI  GV PD   YN L+ GFC  G
Sbjct: 402 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 444



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 150/315 (47%), Gaps = 15/315 (4%)

Query: 10  MHPSP-----PPVCSFNILFGCL---AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +H +P     P V S+NIL   L    K+   D +L +     ++   PD+  YN +I+ 
Sbjct: 136 LHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTV-CSPDVVAYNTVIDG 194

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           F K G V+    +   +++    PD VT+ S++  LC    + +A A   ++      P+
Sbjct: 195 FFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 254

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +TY  LI G   TG    A+ +F+EM   +        PD +T S +   LCK G + +
Sbjct: 255 NWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS------ILPDVVTLSMLMGSLCKYGKIKE 308

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+++F  M  +  NPDV +Y  ++ G+       +   LF  M+  G+ P+  TFNV + 
Sbjct: 309 ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIK 368

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
                G +D+A  +   M   GV+PD   Y T++   C  G+++ A E F  M   G   
Sbjct: 369 AYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAP 428

Query: 302 DVFSYGILINGYCKN 316
           D ++Y  LI G+C +
Sbjct: 429 DKYAYNCLIQGFCTH 443



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 5/213 (2%)

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C +G  + A+ LF   A+   +   V  P + TY+ + D   +    + A   F ++   
Sbjct: 49  CGSGPAL-AVALFNRAAS-RAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRT 106

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDE 251
            +  D +  + L++GFC A   +EA  + +    + G  P+V ++N+++  LC  GK  +
Sbjct: 107 GLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQ 166

Query: 252 ASRLLELMIQIGV--RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           A  LL +M + G    PD   YNT++DGF   G VN+A +LF  M   G   D+ +Y  +
Sbjct: 167 ADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSV 226

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  CK + ++ A +   +M++K + P   TYN
Sbjct: 227 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYN 259



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R H   P V + ++L G L K         +F  +   G  PD+++YNI++N +   G 
Sbjct: 281 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 340

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +   +L     PD  TF   IK       + +A  +F ++R  G KPDV TY T
Sbjct: 341 LVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 400

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +I  LCR G    A+  F +M +     GV   PD   Y+ +  G C  G + K +
Sbjct: 401 VIAALCRIGKMDDAMEKFNQMIDQ----GVA--PDKYAYNCLIQGFCTHGILLKTQ 450



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ML      P   +FN+     A     D  + +F  +   G+ PD+ TY  +I   
Sbjct: 347 LFDLMLG-DGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 405

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           C++G++        +++     PD   +  LI+G C    +++   +
Sbjct: 406 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGILLKTQGI 452


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 172/364 (47%), Gaps = 41/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     K    D  + +F+++      PD+ TYN LINCFCK  R+   F  
Sbjct: 288 PDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF 347

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P+ VT+++ I   C E  + EA   F  +R     P+ FTYT+LI+  C+
Sbjct: 348 LHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 407

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL L EE+     +  VV      TY+ + DGLC+EG + +A+E+F  M +  +
Sbjct: 408 AGNLAEALKLVEEILQAGIKLNVV------TYTALLDGLCEEGRMKEAEEVFRAMLNAGV 461

Query: 195 NPDVVTYTSLIRGFC------YAND---------------------W--------NEAKC 219
            P+  TYT+L+ GF       YA D                     W         EAK 
Sbjct: 462 APNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKL 521

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  E+ + G+  N V +  +M+   K+G+  EA  LLE M+ +G+      Y  L+DG C
Sbjct: 522 LIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLC 581

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            +G V  A   F  M   G   +V  Y  L++G CKN   E A  L+ EML KG+ P  +
Sbjct: 582 KSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKI 641

Query: 340 TYNT 343
            Y  
Sbjct: 642 AYTA 645



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 165/336 (49%), Gaps = 11/336 (3%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R+ P P    S N L   L+K    D     FK + + G+   ++TYNI+I+  CK G +
Sbjct: 215 RVFPKPR---SCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDL 271

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +  ++  + FTPD VT+ SLI G      + E   +F +++   C PDV TY  L
Sbjct: 272 EMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNAL 331

Query: 129 INGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           IN  C+      A     EM ANG        KP+ +TYST  D  CKEG + +A + F+
Sbjct: 332 INCFCKFERMPKAFEFLHEMKANG-------LKPNVVTYSTFIDAFCKEGMLQEAIKFFV 384

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M+   + P+  TYTSLI   C A +  EA  L  E++  G++ NVVT+  +++ LC+ G
Sbjct: 385 DMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEG 444

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           +M EA  +   M+  GV P+   Y  L+ GF     +  AK++   M+      D+  YG
Sbjct: 445 RMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYG 504

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++ G C    +E A  L  E+   GI    V Y T
Sbjct: 505 TILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTT 540



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 172/342 (50%), Gaps = 8/342 (2%)

Query: 4   FDYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           F+++  M  +   P V +++       K       +  F  +  + L P+ +TY  LI+ 
Sbjct: 345 FEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDA 404

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G ++    ++  IL++    + VT+T+L+ GLC E R+ EA  +F  +   G  P+
Sbjct: 405 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 464

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TYT L++G  +      A ++ +EM           KPD + Y TI  GLC E  +++
Sbjct: 465 QETYTALVHGFIKAKEMEYAKDILKEMKEK------CIKPDLLLYGTILWGLCNESRLEE 518

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AK L  ++K+  IN + V YT+L+  +  +    EA  L  EM+D G+    VT+  +++
Sbjct: 519 AKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALID 578

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK+G + EA      M +IG++P+ +VY  L+DG C       AK+LF  M   G M 
Sbjct: 579 GLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMP 638

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D  +Y  LI+G  K+  ++ AL+L   M+  G+   +  Y  
Sbjct: 639 DKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTA 680



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 163/318 (51%), Gaps = 6/318 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++  L   L +         +F+ + + G+ P+  TY  L++ F K   +     +L 
Sbjct: 430 VVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILK 489

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +   C  PD + + +++ GLC ESR+ EA  L  +++  G   +   YTTL++   ++G
Sbjct: 490 EMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSG 549

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL L EEM +     G++     +TY  + DGLCK G V +A   F +M +  + P
Sbjct: 550 QATEALTLLEEMLD----LGLIATE--VTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQP 603

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +V  YT+L+ G C  N +  AK LF EM+D+G+ P+ + +  +++   K+G + EA  L 
Sbjct: 604 NVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLR 663

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + MI+IG+  D   Y  L+ G   +G+V +A+ L   M   G + D   Y  LI  Y   
Sbjct: 664 DRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYAL 723

Query: 317 KEIEGALSLYSEMLSKGI 334
            +++ AL L +EM  +G+
Sbjct: 724 GKVDEALELQNEMAKRGM 741



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 138/279 (49%), Gaps = 8/279 (2%)

Query: 67  RVSPGFVVLGRIL--RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
           RV P + V   +   R+   P    F +L   L     + EA+  F K+R F   P   +
Sbjct: 163 RVLPSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRS 222

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
              L++ L + G   ++   F++M    G  G+  K    TY+ + D LCKEG ++ A+ 
Sbjct: 223 CNALLHRLSKVGRGDLSRKFFKDM----GAAGI--KRSVFTYNIMIDYLCKEGDLEMARS 276

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           LF +MK+    PD+VTY SLI G       +E  C+F +M D    P+V+T+N ++N  C
Sbjct: 277 LFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFC 336

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K  +M +A   L  M   G++P+   Y+T +D FC  G +  A + FV M       + F
Sbjct: 337 KFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEF 396

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +Y  LI+  CK   +  AL L  E+L  GI+  VVTY  
Sbjct: 397 TYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTA 435


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 177/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+++T++T+ DG CK G VD A E++
Sbjct: 217 VLINGLCKESKIDDANELFDEMLVK----GLV--PNSVTFTTLIDGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A  L  EM  +G++P+ +T+  +++  CK+
Sbjct: 271 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKD 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ   R D  VY  L+ G C  G+   A+++   M S G   D  +Y
Sbjct: 331 GDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYN 426



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 166/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES+I +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A  L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ +  + + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PDA  Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 100/171 (58%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+
Sbjct: 152 FCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V T++V++N LCK  K+D+A+ L + M+  G+ P++  + TL+DG C  GRV+ A E++ 
Sbjct: 212 VYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYK 271

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 272 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTT 322



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 112/237 (47%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVV------CKPDAITY 166
           +  + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +
Sbjct: 16  RHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIFETKGTQRSDLYVF 75

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++        T   ++        +      + E+++
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 135

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++ 
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   DV++Y +LING CK  +I+ A  L+ EML KG+ P  VT+ T
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTT 252


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 177/367 (48%), Gaps = 51/367 (13%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S N     L +       L+LF+   +    P+ +TY ILI  F   G +     +L 
Sbjct: 22  VFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLE 81

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +  S F  +AV  T+L+KGLC   R++EA   F  + A  C PDV TYT L++ LC+ G
Sbjct: 82  EMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMTYTALVHALCKAG 140

Query: 137 HTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD---- 191
               A  +  EM A G       C PD +T+ST+ DGLCK G  ++A   F  ++D    
Sbjct: 141 KFDEAQGMLREMVAQG-------CAPDTVTFSTLIDGLCKFGSEEQA---FRVLEDVIQR 190

Query: 192 -----------------------------------ENINPDVVTYTSLIRGFCYANDWNE 216
                                              +   P V+ +  +I GFC A D + 
Sbjct: 191 GMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDS 250

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  L   M+++G  PNV TF +++  LCK  ++ EA +LLE M+  G  P+   Y+T+++
Sbjct: 251 AYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVIN 310

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C  G+V+ A ELF  ME   C  +V ++ ILI+G CK K IE A  LY  M   G  P
Sbjct: 311 GLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAP 370

Query: 337 TVVTYNT 343
            ++TYN+
Sbjct: 371 DIITYNS 377



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 174/360 (48%), Gaps = 32/360 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ IL    +     D  + L + + S G   +   +  L+   C  GRV      
Sbjct: 55  PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEH 114

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + + C  PD +T+T+L+  LC   +  EA  +  ++ A GC PD  T++TLI+GLC+
Sbjct: 115 FRAMAKDC-APDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCK 173

Query: 135 TGHTIVALNLFEE-----MANGNGEF---------------------GVVCK----PDAI 164
            G    A  + E+     M N +  F                     GVV      P  +
Sbjct: 174 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL 233

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            ++ + +G CK   +D A +L   M ++   P+V T+T LI G C AN   EA+ L  +M
Sbjct: 234 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKM 293

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +  G  PNVVT++ ++N LCK G++D+A  L +LM +    P+   +N L+DG C   R+
Sbjct: 294 VMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRI 353

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT-VVTYNT 343
             A++L+  M   GC  D+ +Y  LI+G CK+ +++ A  L+  +   G+     VTY+T
Sbjct: 354 EEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYST 413



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 170/379 (44%), Gaps = 46/379 (12%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M R +  PP V + NIL   L K K  +    L+ R+   G  PD+ TYN LI+  
Sbjct: 324 LFQLMERRN-CPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGL 382

Query: 63  CKMGRVSP--------------------------GFVVLGRILRSC----------FTPD 86
           CK  +V                            G+  LGR+  +C          F+PD
Sbjct: 383 CKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPD 442

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
             T+TSLI   C  SR +E   L  ++ + G  P V T + ++ GL    HT  A+ LF+
Sbjct: 443 LATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFD 502

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK---ELFLKMKDENINPDVVTYTS 203
            MA         C  DA+ Y+ + +G+ +    DKA    E  +  +D   NP      +
Sbjct: 503 SMAARG------CTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDA 556

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+   C     ++AK L  +M ++G    V ++N +++ L +  + DEA+++ E M+  G
Sbjct: 557 LVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAG 616

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
             P+ S  N ++   C   +V+ A EL   M   GC  D+ +   LI GYCK+   + A 
Sbjct: 617 PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLAR 676

Query: 324 SLYSEMLSKGIRPTVVTYN 342
            L  EM   G+ P   T++
Sbjct: 677 KLLEEMTEAGLEPNDTTHD 695



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 150/328 (45%), Gaps = 43/328 (13%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           ++++ N  ++  C++ R      +    +     P+  T+  LI+G  +   +  A  L 
Sbjct: 21  NVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLL 80

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++++ G + +   +TTL+ GLC  G  + AL  F  MA         C PD +TY+ + 
Sbjct: 81  EEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD-------CAPDVMTYTALV 133

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV- 229
             LCK G  D+A+ +  +M  +   PD VT+++LI G C      +A  +  +++ +G+ 
Sbjct: 134 HALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMG 193

Query: 230 -----------------------------------QPNVVTFNVIMNELCKNGKMDEASR 254
                                               P V+ FN+++N  CK   +D A +
Sbjct: 194 NSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYK 253

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE+MI+ G  P+   +  L+ G C   RV  A++L   M   GC  +V +Y  +ING C
Sbjct: 254 LLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLC 313

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K  +++ A  L+  M  +   P VVT+N
Sbjct: 314 KQGQVDDAYELFQLMERRNCPPNVVTHN 341



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 1/159 (0%)

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           LF       +  +V +    +   C  N   EA  LF   M +   PN  T+ +++    
Sbjct: 9   LFFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFS 68

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
             G +D A +LLE M   G   +A V+ TLM G C  GRV  A E F +M  + C  DV 
Sbjct: 69  SAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD-CAPDVM 127

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +Y  L++  CK  + + A  +  EM+++G  P  VT++T
Sbjct: 128 TYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFST 166


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 175/330 (53%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N +   L K K  +  + L   +      P+ +TY IL++  CK GRV     +
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG + R     D V +++LI G C++  +    ALF ++   G  P+V  Y+ LING C+
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +   M     E G+  +PD  TY+ +  GLCK+G   KA +LF  M ++  
Sbjct: 128 KGLWREATAVLHTMT----ERGI--QPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGE 181

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P  VTY  LI G C      +A  +F  M+++G +  VV++N ++  LC NGK+DEA +
Sbjct: 182 EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMK 241

Query: 255 LLELMIQIG--VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           L   +++ G  V PD   +NT++ G C  GR+++A E++ +M   G   ++F+  ILI  
Sbjct: 242 LFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGE 301

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           Y K+  I+ A+ L+  +   G+ P+  TY+
Sbjct: 302 YIKSGIIDKAMELWKRVHKLGLVPSSTTYS 331



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 149/261 (57%), Gaps = 8/261 (3%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
           PD V++ ++I GLC E R+ +A  L  ++    C+P+ FTY  L++GLC+ G    A+ L
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
             EM     E       D + YST+  G C +G +D+ K LF +M ++ I+P+VV Y+ L
Sbjct: 68  LGEMKRKGLEV------DVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCL 121

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I GFC    W EA  +   M ++G+QP+V T+  ++  LCK+G+  +A  L +LM + G 
Sbjct: 122 INGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGE 181

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            P    YN L++G C  G +  A ++F +M   G   +V SY  LI G C N +++ A+ 
Sbjct: 182 EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMK 241

Query: 325 LYSEMLSKG--IRPTVVTYNT 343
           L+S +L  G  + P V+T+NT
Sbjct: 242 LFSSLLEDGNYVEPDVITFNT 262



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 161/293 (54%), Gaps = 8/293 (2%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           +  I + PD+ +YN +IN  CK  R+     +L  +  S   P++ T+  L+ GLC E R
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + EA  L  +++  G + DV  Y+TLI+G C  G       LF+EM     E G+   P+
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEML----EKGI--SPN 114

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            + YS + +G CK+G   +A  +   M +  I PDV TYT +I G C      +A  LF 
Sbjct: 115 VVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFD 174

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
            M ++G +P+ VT+NV++N LCK G + +A ++ E M++ G R +   YNTL+ G C  G
Sbjct: 175 LMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNG 234

Query: 283 RVNRAKELFVSMESNG--CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           +++ A +LF S+  +G     DV ++  +I G CK   ++ A+ +Y  M+ +G
Sbjct: 235 KLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERG 287



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 162/331 (48%), Gaps = 8/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  + G L K+      L LF  +   G  P   TYN+LIN  CK G +   F +
Sbjct: 148 PDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKI 207

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLINGL 132
              +L      + V++ +LI GLC   ++ EA  LF+ L   G   +PDV T+ T+I GL
Sbjct: 208 FETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGL 267

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A+ +++ M    G FG     +  T   +     K G +DKA EL+ ++   
Sbjct: 268 CKEGRLDKAVEIYDTMIE-RGSFG-----NLFTCHILIGEYIKSGIIDKAMELWKRVHKL 321

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + P   TY+ +I GFC  +  N AK LF  M   G+ P +  +N +M  LCK   +++A
Sbjct: 322 GLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQA 381

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            RL + M +    PD   +N ++DG    G ++ AKEL   M+  G   D ++Y   IN 
Sbjct: 382 RRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINR 441

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             K  ++E A   +  M++ GI P    Y++
Sbjct: 442 LSKLGQMEEAKGAFDSMIASGITPDNHVYDS 472



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 8/286 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN +   L K    D  + ++  +   G F +L+T +ILI  + K G +     +
Sbjct: 255 PDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMEL 314

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+ +    P + T++ +I G C    +  A  LF++++  G  P +F Y TL+  LC+
Sbjct: 315 WKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCK 374

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF+EM   N      C+PD I+++ + DG  K G +  AKEL   M+   +
Sbjct: 375 ESSLEQARRLFQEMKESN------CEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGL 428

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY+S I          EAK  F  M+  G+ P+   ++ ++     N +++E   
Sbjct: 429 TPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVIN 488

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF--VSMESNG 298
           LL  M  +GV  D  + N+++   C +       EL    S ES+G
Sbjct: 489 LLRQMADMGVILDLEITNSILTFLCNSAEHLHVMELLPNFSSESSG 534



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 87/153 (56%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           MK  NI PD+V+Y ++I G C      +A  L +EM     +PN  T+ ++M+ LCK G+
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           ++EA RLL  M + G+  D  VY+TL+ GFC  G ++R K LF  M   G   +V  Y  
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           LING+CK      A ++   M  +GI+P V TY
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTY 153



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 64/114 (56%)

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           + P++V++N I+N LCK  ++++A  LL  M      P++  Y  LMDG C  GRV  A 
Sbjct: 6   ILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAM 65

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            L   M+  G   DV  Y  LI+G+C    ++   +L+ EML KGI P VV Y+
Sbjct: 66  RLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYS 119



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 51/85 (60%)

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M +I + PD   YNT+++G C   R+ +A +L V ME + C  + F+Y IL++G CK   
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           +E A+ L  EM  KG+   VV Y+T
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYST 85


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 172/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 80  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYQEILECGYPASLYFFNILMHRFCKEG 139

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 140 NIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 199

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P  +T++T+ DG CK G VD A E++
Sbjct: 200 VLINGLCKEXKMDEANELFDEMLV----XGLV--PXGVTFTTLIDGHCKNGRVDLAMEIY 253

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   B  +A  L  EM  +G +P+ +T+  +++  CK 
Sbjct: 254 KQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKE 313

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 314 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTY 373

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 374 TMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYN 409



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 160/299 (53%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K  +     S+F  +   GL P + +YN L++ + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFR 181

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC E ++ EA  LF ++   G  P   T+TTLI+G C
Sbjct: 182 LKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHC 241

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A  L  +M  + 
Sbjct: 242 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKG 295

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD +TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 296 XKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 355

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G +PD   Y  +++ FC  G V    +L   M+ +G +  V +Y +L+NG
Sbjct: 356 KMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 97/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CKEG +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M   GVQP+V
Sbjct: 136 CKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDV 195

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMDEA+ L + M+  G+ P    + TL+DG C  GRV+ A E++  
Sbjct: 196 YTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQ 255

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG +P  +TY T
Sbjct: 256 MLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTT 305



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 108/234 (46%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +
Sbjct: 2   LHSYCTMIHFLCTHQMLSEAKSLIQFVVSRKGKGSASAVFAAILETKGTQRSDIXVFSGL 61

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E +   ++        T   ++        +      + E+++ G 
Sbjct: 62  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYQEILECGY 121

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK G +  A  + + + + G+RP    YNTLM G+   G ++    
Sbjct: 122 PASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFR 181

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  VT+ T
Sbjct: 182 LKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTT 235


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 162/325 (49%), Gaps = 7/325 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD MLR     P V +FN L   + K    +   +L   +   G+ PD+YTY   I   
Sbjct: 136 VFDEMLR-RGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGL 194

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR+     +   +      P+ V  T+LI   C E  +     L  ++   G K D+
Sbjct: 195 CKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADL 254

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  L+NG CR      A ++ EEM           KPD +TY+T+ DG CKEG +D A
Sbjct: 255 VAYNALVNGFCRVRDMKAANDIVEEMRKDG------LKPDKVTYTTLIDGCCKEGELDTA 308

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+  +M DE +  D VTYT+LI G   A    +A+ +  EMM+ G+QP+  T+ ++++ 
Sbjct: 309 MEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDA 368

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CKNG +    + L+ M   G  P    YN +M+GFC  G++  A  L  +M + G   +
Sbjct: 369 FCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPN 428

Query: 303 VFSYGILINGYCKNKEIEGALSLYS 327
             +Y IL++G+CK+ ++     L S
Sbjct: 429 DITYNILLDGHCKHGKVRDTEELKS 453



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 153/305 (50%), Gaps = 6/305 (1%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           + +  L   G+ P+   +N+L+    + G+++    V   +LR    P  VTF +L+ G+
Sbjct: 100 AFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGM 159

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C  S +  A AL   +   G  PDV+TY   I GLC+TG    A+ +FEEM     E G+
Sbjct: 160 CKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMC----ERGL 215

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              P+ +  +T+ D  CKEG V    EL  +M    +  D+V Y +L+ GFC   D   A
Sbjct: 216 --NPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAA 273

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +  EM   G++P+ VT+  +++  CK G++D A  + + M   GV  D   Y  L+ G
Sbjct: 274 NDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISG 333

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
               GR   A+ +   M   G   D  +Y ++I+ +CKN +++       EM +KG  P 
Sbjct: 334 LSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPG 393

Query: 338 VVTYN 342
           +VTYN
Sbjct: 394 IVTYN 398



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 173/329 (52%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP    FN+L   + ++    +  ++F  +   G+ P + T+N L++  CK   ++    
Sbjct: 111 PPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANA 170

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + G + ++   PD  T+ + I+GLC   RI +A  +F ++   G  P+    TTLI+  C
Sbjct: 171 LRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHC 230

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G     L L  EMA      GV  K D + Y+ + +G C+   +  A ++  +M+ + 
Sbjct: 231 KEGDVTAGLELRWEMAT----RGV--KADLVAYNALVNGFCRVRDMKAANDIVEEMRKDG 284

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTYT+LI G C   + + A  +  EM D+GV  + VT+  +++ L K G+  +A 
Sbjct: 285 LKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAE 344

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R+L  M++ G++PD + Y  ++D FC  G V    +    M++ G    + +Y +++NG+
Sbjct: 345 RILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGF 404

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           C   +++ A  L + ML+ G+ P  +TYN
Sbjct: 405 CSLGQMKNADMLLNAMLNIGVCPNDITYN 433



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 6/239 (2%)

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + EA A +  L   G  P+   +  L+  + R+G    A N+F+EM       GV  +P 
Sbjct: 95  VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEML----RRGV--QPT 148

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +T++T+  G+CK   ++ A  L   M    I PDV TY + I+G C      +A  +F 
Sbjct: 149 VVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFE 208

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM ++G+ PN V    +++  CK G +     L   M   GV+ D   YN L++GFC   
Sbjct: 209 EMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVR 268

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +  A ++   M  +G   D  +Y  LI+G CK  E++ A+ +  EM  +G+    VTY
Sbjct: 269 DMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTY 327



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 98/183 (53%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P+A  ++ +   + + G +  A+ +F +M    + P VVT+ +L+ G C A+D N A  L
Sbjct: 112 PEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANAL 171

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
              M   G+ P+V T+   +  LCK G++ +A  + E M + G+ P+  V  TL+D  C 
Sbjct: 172 RGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCK 231

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G V    EL   M + G   D+ +Y  L+NG+C+ ++++ A  +  EM   G++P  VT
Sbjct: 232 EGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVT 291

Query: 341 YNT 343
           Y T
Sbjct: 292 YTT 294



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           V +A   +L + D  + P+   +  L+R    +     A+ +F EM+ +GVQP VVTFN 
Sbjct: 95  VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 154

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +M+ +CK   ++ A+ L  LM + G+ PD   Y   + G C TGR+  A E+F  M   G
Sbjct: 155 LMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERG 214

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +      LI+ +CK  ++   L L  EM ++G++  +V YN 
Sbjct: 215 LNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNA 259



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G + +   LL L ++ G+R     ++ LM+       V  A   ++ +   G   +   +
Sbjct: 61  GLLPDGCSLLLLALRRGIRVPMPAWSDLMNRLP---SVPEAYAFYLHLLDAGVPPEARQF 117

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L+    ++ ++  A +++ EML +G++PTVVT+NT
Sbjct: 118 NMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 154


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 167/334 (50%), Gaps = 22/334 (6%)

Query: 26  CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP 85
           CL     ++    + K +   G  PD  TY  +I   C+  +V   F++   + R+   P
Sbjct: 426 CLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNP 485

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D  T+T LI   C    I +A + F ++R+ GC P+V TYT L++   ++   I A ++F
Sbjct: 486 DVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIF 545

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN------------ 193
             M +        C P+A+TYS + DGLCK G + KA E++ K+   +            
Sbjct: 546 HRMVDA------ACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGN 599

Query: 194 ----INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I P+VVTY +LI G C A   ++A  L   M+  G +PN + ++ +++  CK GK+
Sbjct: 600 DTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKI 659

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  +   M + G  P    Y +L+D     GR++ A ++   M ++ C  +V +Y  +
Sbjct: 660 DNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAM 719

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+G  K  EIE AL+L S M  KG  P VVTY  
Sbjct: 720 IDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTA 753



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 168/337 (49%), Gaps = 10/337 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  +   L + K  +    LF+ +   G+ PD+YTY ILI+ FCK G +      
Sbjct: 450 PDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSW 509

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P+ VT+T+L+       ++++A  +F ++    C P+  TY+ LI+GLC+
Sbjct: 510 FDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCK 569

Query: 135 TGHTIVALNLFEEMANGNG--------EFGVVC--KPDAITYSTITDGLCKEGFVDKAKE 184
            G    A  ++E++   +G        E    C   P+ +TY  + DGLCK   V  A E
Sbjct: 570 AGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHE 629

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L   M      P+ + Y +LI GFC     + A+ +F+ M   G  P+V T+  +++ + 
Sbjct: 630 LLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMF 689

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K+G++D A ++L  M+     P+   Y  ++DG    G + +A  L   ME  GC  +V 
Sbjct: 690 KDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVV 749

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +Y  LI+G  K  + + +L L+ +M SKG  P  VTY
Sbjct: 750 TYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTY 786



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 164/338 (48%), Gaps = 42/338 (12%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F+  ++  + P++ TY  LI+  CK  +VS    +L  +L +   P+ + + +LI G C 
Sbjct: 596 FEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCK 655

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             +I  A  +F ++   G  P V TYT+LI+ + + G   +A+ +  EM N +      C
Sbjct: 656 IGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDS------C 709

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            P+ +TY+ + DGL K G ++KA  L   M+++  +P+VVTYT+LI G       + +  
Sbjct: 710 NPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLK 769

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM-------------------- 259
           LF +M  +G  PN VT+ V++N  C  G +DEA  LL+ M                    
Sbjct: 770 LFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFS 829

Query: 260 ----IQIGVR---------PDASVYNTLMDGFCLTGRVNRAKEL---FVSMESNGCMRDV 303
                 +G+          P A VY  L+D F   GR+  A EL    V + S+  M   
Sbjct: 830 KKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTST 889

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             Y  LI   C   ++E A +LY+EM  KGI P ++ +
Sbjct: 890 GMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVF 927



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 169/392 (43%), Gaps = 60/392 (15%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M R   +P  V ++ IL     K    +   S F  + S+G  P++ TY  L++
Sbjct: 472 FLLFQEMKRAGVNPD-VYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLH 530

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--- 117
            + K  ++     +  R++ +   P+AVT+++LI GLC    I +A  ++ KL       
Sbjct: 531 AYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNV 590

Query: 118 -------------CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
                          P+V TY  LI+GLC+      A  L + M          C+P+ I
Sbjct: 591 ESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAM------LAAGCEPNQI 644

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMK---------------------------------- 190
            Y  + DG CK G +D A+E+FL+M                                   
Sbjct: 645 VYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEM 704

Query: 191 -DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            +++ NP+VVTYT++I G     +  +A  L   M ++G  PNVVT+  +++ L K GK 
Sbjct: 705 LNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKA 764

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D + +L + M   G  P+   Y  L++  C  G ++ A  L   M+     + +  Y   
Sbjct: 765 DASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCA 824

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + G+  +K+   +L L  EM S    P    Y
Sbjct: 825 VQGF--SKKFIASLGLLEEMESHETVPIAPVY 854



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 163/363 (44%), Gaps = 29/363 (7%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I + M+    +P P   FN L         Y     LF R+ + G  P    YNI I   
Sbjct: 328 IINMMMTEGCNPNPSL-FNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSI 386

Query: 63  CKMGRVSPGFV------VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           C    +    +      V   +L +    + V   +  + LC   +  +A  +  ++   
Sbjct: 387 CGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRK 446

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G  PD  TYT +I  LC+      +  LF+EM       GV   PD  TY+ + D  CK 
Sbjct: 447 GFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRA----GV--NPDVYTYTILIDSFCKA 500

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +++A+  F +M+    +P+VVTYT+L+  +  +    +A  +F  M+D    PN VT+
Sbjct: 501 GLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTY 560

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIG----------------VRPDASVYNTLMDGFCL 280
           + +++ LCK G++ +A  + E +I                   + P+   Y  L+DG C 
Sbjct: 561 SALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCK 620

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             +V+ A EL  +M + GC  +   Y  LI+G+CK  +I+ A  ++  M   G  P+V T
Sbjct: 621 AQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHT 680

Query: 341 YNT 343
           Y +
Sbjct: 681 YTS 683



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 145/365 (39%), Gaps = 50/365 (13%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
            N+L     ++  +D  L    RL   G  P   TYN L+      G+V  GF V   + 
Sbjct: 172 LNVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMS 231

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            S F  D  T     + LC   R  +A  +  K   F    D    T +I+GL       
Sbjct: 232 ASGFCMDRSTIGYFAQALCKVGRWADALNMLEK-EDFNL--DTVLCTQMISGLMEASLFN 288

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A++    M   +      C P+ +TY T+  G  K+      K +   M  E  NP+  
Sbjct: 289 EAMSFLHRMRCNS------CIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPS 342

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN------------- 246
            + SL+ G+C A D+  A  LF  M   G  P  V +N+ +  +C               
Sbjct: 343 LFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVE 402

Query: 247 ----------------------------GKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
                                       GK ++A ++L+ M++ G  PD S Y  ++   
Sbjct: 403 KVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFL 462

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   +V ++  LF  M+  G   DV++Y ILI+ +CK   IE A S + EM S G  P V
Sbjct: 463 CQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNV 522

Query: 339 VTYNT 343
           VTY  
Sbjct: 523 VTYTA 527



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 151/373 (40%), Gaps = 56/373 (15%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   LA     +    + K +++ G   D  T        CK+GR +     
Sbjct: 202 PSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRWADA--- 258

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +  F  D V  T +I GL   S   EA +   ++R   C P+V TY TL++G  +
Sbjct: 259 LNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 318

Query: 135 T---GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
               G     +N+   M  G       C P+   ++++  G C  G    A +LF +M  
Sbjct: 319 KKQFGWCKRIINMM--MTEG-------CNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTT 369

Query: 192 ENINPDVVTYTSLIRGFC-----------------------------YANDWNEAKCL-- 220
               P  V Y   I   C                               N  N ++CL  
Sbjct: 370 CGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCG 429

Query: 221 ----------FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
                       EMM +G  P+  T+  ++  LC+  K++++  L + M + GV PD   
Sbjct: 430 VGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYT 489

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           Y  L+D FC  G + +A+  F  M S GC  +V +Y  L++ Y K+K++  A  ++  M+
Sbjct: 490 YTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMV 549

Query: 331 SKGIRPTVVTYNT 343
                P  VTY+ 
Sbjct: 550 DAACYPNAVTYSA 562



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 141/331 (42%), Gaps = 28/331 (8%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           ++  +S   R+      P++ TY  L++ F K  +      ++  ++     P+   F S
Sbjct: 287 FNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNS 346

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA--LNL----FE 146
           L+ G C       A  LF ++   G  P    Y   I  +C       A  L+L    +E
Sbjct: 347 LVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYE 406

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM          C  + +  +  +  LC  G  +KA ++  +M  +   PD  TYT +I 
Sbjct: 407 EM------LAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVIT 460

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
             C A    ++  LF EM   GV P+V T+ ++++  CK G +++A    + M  +G  P
Sbjct: 461 FLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSP 520

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           +   Y  L+  +  + ++ +A ++F  M    C  +  +Y  LI+G CK  EI+ A  +Y
Sbjct: 521 NVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVY 580

Query: 327 SEMLSKG----------------IRPTVVTY 341
            +++                   I P VVTY
Sbjct: 581 EKLIGTSGNVESDFYFEGNDTCTIAPNVVTY 611



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 135/324 (41%), Gaps = 43/324 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML     P  +  ++ L     K    D    +F R+   G  P ++TY  LI+  
Sbjct: 630 LLDAMLAAGCEPNQIV-YDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRM 688

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K GR+     VL  +L     P+ VT+T++I GL     I +A  L + +   GC P+V
Sbjct: 689 FKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNV 748

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LI+GL +TG    +L LF++M N  G     C P+ +TY  + +  C  G +D+A
Sbjct: 749 VTYTALIDGLGKTGKADASLKLFKQM-NSKG-----CAPNYVTYRVLINHCCAAGLLDEA 802

Query: 183 KELFLKMK---------------------------------DENINPDVVTYTSLIRGFC 209
             L  +MK                                      P    Y  LI  F 
Sbjct: 803 HLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFS 862

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVT---FNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
            A     A  L  E+++     N+ +   +  ++  LC   +++EA  L   M + G+ P
Sbjct: 863 KAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVP 922

Query: 267 DASVYNTLMDGFCLTGRVNRAKEL 290
           D  V+ +L+ G     + + A +L
Sbjct: 923 DLIVFVSLVKGLIEVNKWDEALQL 946


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 171/327 (52%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++N L G   +    +    +   +   GL P L+TYN +IN  CK GR +    +L 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L    +PD  T+ +L+   C      EA  +F ++   G  PD+ ++++L+    R  
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           H   AL  F +M     +FG+V  PD + Y+ +  G C+ G + +A ++  +M ++    
Sbjct: 121 HLDQALVYFRDMK----KFGLV--PDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVL 174

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DV+ Y +++ G C      +A  LF EM+++G  P+  TF  +++  C++G M +A  L 
Sbjct: 175 DVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLF 234

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M Q  ++PD   YNTL+DGFC  G + +A EL+  M S     +  +YGILIN YC  
Sbjct: 235 GTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSV 294

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  A  L+  M+ KGI+PT+VT NT
Sbjct: 295 GHVSEAFRLWDVMIEKGIKPTLVTCNT 321



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   L K   Y     +   + +IGL PD  TYN L+   C+    S    +
Sbjct: 34  PSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEI 93

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G +LR    PD V+F+SL+        + +A   F  ++ FG  PD   YT L++G CR
Sbjct: 94  FGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCR 153

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+ + AL + +EM          C  D I Y+TI +GLCKE  +  A +LF +M +   
Sbjct: 154 NGNMLEALKIRDEMLEQG------CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGA 207

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  T+T+LI G C   +  +A  LF  M  + ++P++V +N +++  CK G+M++AS 
Sbjct: 208 LPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASE 267

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + MI   + P+   Y  L++ +C  G V+ A  L+  M   G    + +   +I GYC
Sbjct: 268 LWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYC 327

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ +   A      M++KG+ P  ++YNT
Sbjct: 328 RSGDSSKADEFLGRMIAKGVAPDHISYNT 356



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 132/275 (48%), Gaps = 42/275 (15%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF  MLR     P + SF+ L    ++N+H D  L  F+ +   GL PD   Y +L++ +
Sbjct: 93  IFGEMLR-QGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGY 151

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G +     +   +L      D + + +++ GLC E  + +A  LF ++   G  PD 
Sbjct: 152 CRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDF 211

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +T+TTLI+G C+ G+   AL+LF  M   N       KPD + Y+T+ DG CK G ++KA
Sbjct: 212 YTFTTLIHGHCQDGNMTKALSLFGTMTQRN------IKPDIVAYNTLIDGFCKVGEMEKA 265

Query: 183 KELFLKMKDENINPDVVTY-----------------------------------TSLIRG 207
            EL+  M    I P+ +TY                                    ++I+G
Sbjct: 266 SELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKG 325

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +C + D ++A      M+ +GV P+ +++N ++N+
Sbjct: 326 YCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIND 360


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 171/330 (51%), Gaps = 7/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ +   L K         L + +   G  P++YT+  LI+  CK G     F +
Sbjct: 312 PNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRL 371

Query: 75  LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
             +++RS  + P+  T+T++I G C E ++  A  LF +++  G  P+  TYTTLI+G C
Sbjct: 372 FLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHC 431

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+   A  L E M+N  G F     P+  TY++I DGLCK G  ++A +L        
Sbjct: 432 KAGNFSKAYELMELMSN-EGFF-----PNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQ 485

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I  D VTYT LI   C   D N+A     +M   G QP++  +  ++   C+   M ++ 
Sbjct: 486 IEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSE 545

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L + +I++G+ P    Y +++ G+C   +V+ A + F  M  +GC  D  SYG LI+G 
Sbjct: 546 KLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGL 605

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK   ++ A  LY  M+ KG+ P  VT  T
Sbjct: 606 CKESRLDEARQLYDTMIDKGLSPCEVTRVT 635



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 164/307 (53%), Gaps = 7/307 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           ++F  +++ G++PD  TY  +I  +C+ G V      +  ++   F  D  T T +I   
Sbjct: 230 NVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAF 289

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C +S +  A   F K+   G  P++  Y+++I+GLC+ G    A  L EEM   NG    
Sbjct: 290 CEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVK-NG---- 344

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNE 216
             KP+  T++++  GLCK+G+ ++A  LFLK+ + +N  P+V TYT++I G+C     + 
Sbjct: 345 -WKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSR 403

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A+ LF  M +QG+ PN  T+  +++  CK G   +A  L+ELM   G  P+   YN+++D
Sbjct: 404 AEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVD 463

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C  GR   A +L  +   N    D  +Y ILI+  CK  ++  AL   ++M   G +P
Sbjct: 464 GLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQP 523

Query: 337 TVVTYNT 343
            +  Y T
Sbjct: 524 DIHLYTT 530



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 157/346 (45%), Gaps = 12/346 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ++R     P V ++  +     K +       LF+R+   GL P+  TY  LI+
Sbjct: 369 FRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 428

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G  S  + ++  +    F P+  T+ S++ GLC   R  EA  L         + 
Sbjct: 429 GHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEA 488

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT LI+  C+      AL    +M      F V  +PD   Y+T+    C++  + 
Sbjct: 489 DGVTYTILISEQCKRADMNQALVFLNKM------FKVGFQPDIHLYTTLIAAFCRQNMMK 542

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            +++LF ++    + P   TYTS+I G+C     + A   F +M D G  P+ +++  ++
Sbjct: 543 DSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALI 602

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK  ++DEA +L + MI  G+ P      TL   +C T     A  +   +     +
Sbjct: 603 SGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWI 662

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI---RPTVVTYNT 343
           R V +   LI   C  K++  A   + ++L K +   R T+  +NT
Sbjct: 663 RTVHT---LIRKLCCEKKVALAALFFHKLLDKEVNVDRVTLAAFNT 705



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 8/249 (3%)

Query: 97  LCAESRIME-AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
           + AE R++E A  +F ++ A G  PD  TY  +I G CR G+ + A     EM     E 
Sbjct: 218 VAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMM----ER 273

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
           G V   D  T + I    C++  V++A   F K+    ++P+++ Y+S+I G C      
Sbjct: 274 GFVV--DNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVK 331

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL-LELMIQIGVRPDASVYNTL 274
           +A  L  EM+  G +PNV T   +++ LCK G  + A RL L+L+     +P+   Y  +
Sbjct: 332 QAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAM 391

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + G+C   +++RA+ LF  M+  G + +  +Y  LI+G+CK      A  L   M ++G 
Sbjct: 392 ISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGF 451

Query: 335 RPTVVTYNT 343
            P   TYN+
Sbjct: 452 FPNTCTYNS 460



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/129 (21%), Positives = 59/129 (45%)

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            EA  + ++M +QG+       N I+    +   ++ A  + + M   GV PD+  Y  +
Sbjct: 191 KEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYI 250

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + G+C  G V  A      M   G + D  +  ++I  +C+   +  A+  + ++   G+
Sbjct: 251 IVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGL 310

Query: 335 RPTVVTYNT 343
            P ++ Y++
Sbjct: 311 SPNLINYSS 319


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 170/327 (51%), Gaps = 7/327 (2%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + +++ +   L K         L + +   G  P++YT+  LI+  CK G     F +
Sbjct: 899  PNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRL 958

Query: 75   LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
              +++RS  + P+  T+T++I G C E ++  A  LF +++  G  P+  TYTTLI+G C
Sbjct: 959  FLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHC 1018

Query: 134  RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            + G+   A  L E M+N  G F     P+  TY++I DGLCK G  ++A +L        
Sbjct: 1019 KAGNFSKAYELMELMSN-EGFF-----PNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQ 1072

Query: 194  INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            I  D VTYT LI   C   D N+A     +M   G QP++  +  ++   C+   M ++ 
Sbjct: 1073 IEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSE 1132

Query: 254  RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L + +I++G+ P    Y +++ G+C   +V+ A + F  M  +GC  D  SYG LI+G 
Sbjct: 1133 KLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGL 1192

Query: 314  CKNKEIEGALSLYSEMLSKGIRPTVVT 340
            CK   ++ A  LY  M+ KG+ P  VT
Sbjct: 1193 CKESRLDEARQLYDTMIDKGLSPCEVT 1219



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 164/307 (53%), Gaps = 7/307 (2%)

Query: 38   SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
            ++F  +++ G++PD  TY  +I  +C+ G V      +  ++   F  D  T T +I   
Sbjct: 817  NVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAF 876

Query: 98   CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
            C +S +  A   F K+   G  P++  Y+++I+GLC+ G    A  L EEM   NG    
Sbjct: 877  CEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVK-NG---- 931

Query: 158  VCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNE 216
              KP+  T++++  GLCK+G+ ++A  LFLK+ + +N  P+V TYT++I G+C     + 
Sbjct: 932  -WKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSR 990

Query: 217  AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
            A+ LF  M +QG+ PN  T+  +++  CK G   +A  L+ELM   G  P+   YN+++D
Sbjct: 991  AEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVD 1050

Query: 277  GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
            G C  GR   A +L  +   N    D  +Y ILI+  CK  ++  AL   ++M   G +P
Sbjct: 1051 GLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQP 1110

Query: 337  TVVTYNT 343
             +  Y T
Sbjct: 1111 DIHLYTT 1117



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 157/346 (45%), Gaps = 12/346 (3%)

Query: 1    FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            F +F  ++R     P V ++  +     K +       LF+R+   GL P+  TY  LI+
Sbjct: 956  FRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 1015

Query: 61   CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              CK G  S  + ++  +    F P+  T+ S++ GLC   R  EA  L         + 
Sbjct: 1016 GHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEA 1075

Query: 121  DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            D  TYT LI+  C+      AL    +M      F V  +PD   Y+T+    C++  + 
Sbjct: 1076 DGVTYTILISEQCKRADMNQALVFLNKM------FKVGFQPDIHLYTTLIAAFCRQNMMK 1129

Query: 181  KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
             +++LF ++    + P   TYTS+I G+C     + A   F +M D G  P+ +++  ++
Sbjct: 1130 DSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALI 1189

Query: 241  NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
            + LCK  ++DEA +L + MI  G+ P      TL   +C T     A  +   +     +
Sbjct: 1190 SGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWI 1249

Query: 301  RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI---RPTVVTYNT 343
            R V +   LI   C  K++  A   + ++L K +   R T+  +NT
Sbjct: 1250 RTVHT---LIRKLCCEKKVALAALFFHKLLDKEVNVDRVTLAAFNT 1292



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 8/249 (3%)

Query: 97   LCAESRIME-AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
            + AE R++E A  +F ++ A G  PD  TY  +I G CR G+ + A     EM     E 
Sbjct: 805  VAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMM----ER 860

Query: 156  GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
            G V   D  T + I    C++  V++A   F K+    ++P+++ Y+S+I G C      
Sbjct: 861  GFVV--DNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVK 918

Query: 216  EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL-LELMIQIGVRPDASVYNTL 274
            +A  L  EM+  G +PNV T   +++ LCK G  + A RL L+L+     +P+   Y  +
Sbjct: 919  QAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAM 978

Query: 275  MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            + G+C   +++RA+ LF  M+  G + +  +Y  LI+G+CK      A  L   M ++G 
Sbjct: 979  ISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGF 1038

Query: 335  RPTVVTYNT 343
             P   TYN+
Sbjct: 1039 FPNTCTYNS 1047



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 59/128 (46%)

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA  + ++M +QG+       N I+    +   ++ A  + + M   GV PD+  Y  ++
Sbjct: 779 EAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYII 838

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            G+C  G V  A      M   G + D  +  ++I  +C+   +  A+  + ++   G+ 
Sbjct: 839 VGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLS 898

Query: 336 PTVVTYNT 343
           P ++ Y++
Sbjct: 899 PNLINYSS 906


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 179/341 (52%), Gaps = 5/341 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+      P   SF  L     ++   + V +L   +   G   D  T  +++  F
Sbjct: 171 VFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVF 230

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR      +  R+L     P+ V +T+ I GLC  + + +A  +  ++ A G KP+V
Sbjct: 231 CQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNV 290

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +T+T+LINGLC+ G T  A  LF ++   +       KP+  TY+ +  G CKEG + +A
Sbjct: 291 YTHTSLINGLCKIGWTERAFRLFLKLIKSSSY-----KPNVHTYTVMIGGYCKEGKLARA 345

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + L  +M ++ + P+  TYT+LI G C    +N A  L  +M  +G QPN+ T+N +++ 
Sbjct: 346 EMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDG 405

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK GK+ EA ++L +    G++ D   Y  ++   C  G +  A +LF  M  NGC  D
Sbjct: 406 LCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPD 465

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y  LI  YC+ +++E +  L+ + L+  + PT  TY +
Sbjct: 466 IHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTS 506



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 171/339 (50%), Gaps = 8/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  ML M  +PP V ++      L K  +      + + + + GL P++YT+  LIN  
Sbjct: 242 LFRRMLEM-GTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGL 300

Query: 63  CKMGRVSPGFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           CK+G     F +  ++++S  + P+  T+T +I G C E ++  A  L  ++   G  P+
Sbjct: 301 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 360

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TYTTLI+G C+ G    A  L  +M           +P+  TY+ + DGLCK+G + +
Sbjct: 361 TNTYTTLISGHCKEGSFNCAFELMNKMRREG------FQPNIYTYNALIDGLCKKGKIQE 414

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A ++     ++ +  D VTYT +I   C       A  LF  M + G  P++ T+  ++ 
Sbjct: 415 AYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIA 474

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             C+  +M+E+ +L +  + I + P    Y +++ G+C  G+   A  +F  M  NGC  
Sbjct: 475 RYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQA 534

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           D  +YG LI+G CK   +E A +LY  ML K + P  VT
Sbjct: 535 DSITYGALISGLCKESRLEEARALYEGMLDKRLVPCEVT 573



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 133/266 (50%), Gaps = 6/266 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  +++     P V ++ ++ G   K         L  R+   GL P+  TY  LI+
Sbjct: 310 FRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIS 369

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G  +  F ++ ++ R  F P+  T+ +LI GLC + +I EA  +       G + 
Sbjct: 370 GHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQL 429

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT +I   C+ GH   AL+LF  MA  NG     C PD  TY+T+    C++  ++
Sbjct: 430 DKVTYTVMITEHCKQGHITYALDLFNRMAE-NG-----CHPDIHTYTTLIARYCQQRQME 483

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           ++++LF K     + P   TYTS+I G+C       A  +F  M+  G Q + +T+  ++
Sbjct: 484 ESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALI 543

Query: 241 NELCKNGKMDEASRLLELMIQIGVRP 266
           + LCK  +++EA  L E M+   + P
Sbjct: 544 SGLCKESRLEEARALYEGMLDKRLVP 569



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 133/317 (41%), Gaps = 10/317 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K   ++    L  ++   G  P++YTYN LI+  CK G++   + V
Sbjct: 359 PNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKV 418

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L          D VT+T +I   C +  I  A  LF ++   GC PD+ TYTTLI   C+
Sbjct: 419 LRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQ 478

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 +  LF++         +   P   TY+++  G CK G    A  +F +M     
Sbjct: 479 QRQMEESQKLFDKC------LAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGC 532

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY +LI G C  +   EA+ L+  M+D+ + P  VT   +  E C+  K   A  
Sbjct: 533 QADSITYGALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVS 592

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+   ++  R      N L+      G V  A              D  +Y   IN   
Sbjct: 593 ILD---RLDKRRKNHTVNVLVRKLSAIGHVEDASLFLKKALDVDLAVDRLAYTSFINSCY 649

Query: 315 KNKEIEGALSLYSEMLS 331
            NK+   A  + SE +S
Sbjct: 650 ANKKYALATEI-SEKIS 665


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 11/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N+L     K        SL K +   G  P+++TY+I+INC+CK+ +V   + V
Sbjct: 206 PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEV 265

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ S   P+AVTF +LI G C    + +A  LF ++   GCK  + TY TLI+ LC+
Sbjct: 266 FMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCK 325

Query: 135 T-GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A++LF ++       G    P  +TY+++  G C    + +A + F +M+ + 
Sbjct: 326 KRGGVYTAVDLFNKLE------GAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK- 378

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+V+TY+ LI G C      EA     +M   G  P VVT+  ++N  CK G++  A 
Sbjct: 379 CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSAL 438

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
              E M   G  P+  ++NTL+DG C   R N    L   M + GC  DV +Y  LI+G 
Sbjct: 439 LFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGL 498

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           C    +E A  L+  M      P V T+N
Sbjct: 499 CSANRVEDAQRLFDGM---ACAPNVTTFN 524



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 173/358 (48%), Gaps = 39/358 (10%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           N L   L   + +D  L LFK + + GLF P+ +TYN+LI  FCK G++     V   + 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLA-GLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMK 59

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            S   P+A T  +L+ GLC   ++  A  LF +++A    P   ++  L+ G    G   
Sbjct: 60  SSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVR 119

Query: 140 VALNLFEEMANGN-----GEFGVVCK----------------------------PDAITY 166
            AL   ++M   +     G + +V K                            PD  +Y
Sbjct: 120 DALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESY 179

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
             +   L   G + +A  LF  M     +PD++TY  L+ G+C      EA+ L  E++ 
Sbjct: 180 HILLSALSDSGRMAEAHALFSAM---TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILK 236

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G +PNV T+++I+N  CK  K++EA  +   MI+    P+A  +NTL+ GFC  G +  
Sbjct: 237 AGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLED 296

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNK-EIEGALSLYSEMLSKGIRPTVVTYNT 343
           A +LF  ME  GC   + +Y  LI+  CK +  +  A+ L++++   G+ PT+VTYN+
Sbjct: 297 AIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNS 354



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 173/341 (50%), Gaps = 15/341 (4%)

Query: 8   LRMHPSPPPVCSFN-ILFGCLAKNK---HYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           +R   S     ++N +L G   +NK     +  +  FK + + G+ PDL +Y+IL++   
Sbjct: 128 MRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALS 187

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             GR++    +   +  +C +PD +T+  L+ G C   +  EA +L  ++   G +P+VF
Sbjct: 188 DSGRMAEAHALFSAM--TC-SPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVF 244

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY+ +IN  C+      A  +F +M   N      C P+A+T++T+  G CK G ++ A 
Sbjct: 245 TYSIIINCYCKLDKVEEAWEVFMKMIESN------CVPNAVTFNTLIAGFCKAGMLEDAI 298

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDW-NEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +LF +M+       +VTY +LI   C        A  LF ++   G+ P +VT+N ++  
Sbjct: 299 KLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQG 358

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C   ++ EA +  + M +    P+   Y+ L+DG C   R+  A +    M+++G    
Sbjct: 359 FCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPT 417

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +YG LING+CK  E++ AL  + +M   G  P  V +NT
Sbjct: 418 VVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNT 458



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 120/242 (49%), Gaps = 11/242 (4%)

Query: 17  VCSFNILFGCLAKNKH-YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           + ++N L   L K +    T + LF +L   GL P + TYN LI  FC   R+S      
Sbjct: 313 IVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYF 372

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             +   C  P+ +T++ LI GLC   R+ EAA     ++A G  P V TY  LING C+ 
Sbjct: 373 DEMEGKC-APNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKC 431

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           G    AL  FE+M          C P+ + ++T+ DGLCK    +    L   M  E   
Sbjct: 432 GELKSALLFFEKMKLAG------CAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCK 485

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PDV+TY  LI G C AN   +A+ LF  M      PNV TFN ++  LC   K++EA  +
Sbjct: 486 PDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGLCAQKKVEEARNI 542

Query: 256 LE 257
           L+
Sbjct: 543 LD 544



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           ++ H   P V ++  L     K     + L  F+++   G  P+   +N LI+  CK  R
Sbjct: 409 MKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAER 468

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
            + G  +L  +      PD +T+  LI GLC+ +R+ +A  LF  +    C P+V T+  
Sbjct: 469 ANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNF 525

Query: 128 LINGLCRTGHTIVALNLFE 146
           LI GLC       A N+ +
Sbjct: 526 LIRGLCAQKKVEEARNILD 544



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F   +++    P    FN L   L K +  +  L L   +++ G  PD+ TYN LI+  
Sbjct: 439 LFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGL 498

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           C   RV     +   +  +C  P+  TF  LI+GLCA+ ++ EA
Sbjct: 499 CSANRVEDAQRLFDGM--AC-APNVTTFNFLIRGLCAQKKVEEA 539


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 162/295 (54%), Gaps = 6/295 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  P+L T + L+   C  G+V     +  ++ RS F  D + +  LI  L    +   A
Sbjct: 4   GYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRA 63

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L  ++ +  C  + FTY  +I+ LC+ G  I  L +F EM N       +C P+ I Y
Sbjct: 64  VELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMG-----IC-PNVIVY 117

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S++ +GLC+ G + +A  LF +M  + I  +V+TY SLI   C    W EA   F +M+ 
Sbjct: 118 SSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVG 177

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G+ P+VVTF  +++ L K GK+ EA ++ ELMI+ G  P+   YN+L++G CL  +++ 
Sbjct: 178 EGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDH 237

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           A  LF  M   G   DV SY  LINGYC + + E A++L+ +M  + + P++ TY
Sbjct: 238 AVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTY 292



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 158/305 (51%), Gaps = 6/305 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L LF ++   G   D+  Y  LIN   K  +      +  R+L    + +  T+  +I  
Sbjct: 29  LELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDS 88

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
           LC +   ++   +F ++   G  P+V  Y++LINGLCR G    A+NLF+EM +      
Sbjct: 89  LCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQG---- 144

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
              K + ITY+++    C+ G   +A   F +M  E I PDVVT+T+LI          E
Sbjct: 145 --IKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQE 202

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  +F  M+ QG  PN+VT+N ++N LC + +MD A RL E+M++ G++ D   YNTL++
Sbjct: 203 AYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLIN 262

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G+C +G+   A  LF  M+       + +Y IL+    +N  I  A  L++ M   G  P
Sbjct: 263 GYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSP 322

Query: 337 TVVTY 341
           ++ TY
Sbjct: 323 SLDTY 327



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 179/340 (52%), Gaps = 7/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R       +  +  L   L K +     + L +R+ S     + +TY ++I+  
Sbjct: 31  LFDKMTR-SGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDSL 89

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G    G  +   ++     P+ + ++SLI GLC   ++ EA  LF ++ + G K +V
Sbjct: 90  CKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANV 149

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY +LI+  CR G    A   F +M    GE G++  PD +T++T+ D L K+G V +A
Sbjct: 150 ITYNSLIHASCRFGLWKEATRTFSQMV---GE-GIL--PDVVTFTTLIDHLSKKGKVQEA 203

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++F  M  +   P++VTY SL+ G C  +  + A  LF  M+++G++ +V+++N ++N 
Sbjct: 204 YKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLING 263

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C +GK +EA  L   M    + P  + Y  L+      GR+  AKELF +M+  G    
Sbjct: 264 YCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPS 323

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +Y +L++G CKN  IE A+ ++  + S   +P++  Y+
Sbjct: 324 LDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYS 363



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 160/306 (52%), Gaps = 6/306 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L +F+ + ++G+ P++  Y+ LIN  C++G++     +   ++      + +T+ SLI  
Sbjct: 99  LKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHA 158

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
            C      EA   F+++   G  PDV T+TTLI+ L + G    A  +FE M    GE  
Sbjct: 159 SCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIK-QGE-- 215

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
               P+ +TY+++ +GLC    +D A  LF  M +  I  DV++Y +LI G+C +    E
Sbjct: 216 ---APNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEE 272

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  LF +M  + + P++ T+ +++  L +NG++  A  L   M   G  P    Y  L+D
Sbjct: 273 AMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLD 332

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C  G +  A ++F S++S      +  Y ILI G  + +  E A+ ++ E+ + G+ P
Sbjct: 333 GLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVP 392

Query: 337 TVVTYN 342
            +VTYN
Sbjct: 393 NIVTYN 398



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 166/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ L   L +       ++LF  + S G+  ++ TYN LI+  C+ G        
Sbjct: 112 PNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRT 171

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     PD VTFT+LI  L  + ++ EA  +F  +   G  P++ TY +L+NGLC 
Sbjct: 172 FSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCL 231

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ LFE M     E G+  K D I+Y+T+ +G C  G  ++A  LF KM+ E +
Sbjct: 232 HHQMDHAVRLFEVMV----ERGI--KIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEEL 285

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P + TYT L++          AK LF  M   G  P++ T+ V+++ LCKNG ++EA  
Sbjct: 286 TPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAID 345

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   +  I  +P   +Y+ L+ G     R   A E+F  + + G + ++ +Y I+ING C
Sbjct: 346 VFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLC 405

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K  ++  A  L+ +M   G     +++N
Sbjct: 406 KEGKLLEAERLFVQMEESGCEQDEISFN 433



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 120/261 (45%), Gaps = 30/261 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + IF+ M++     P + ++N L   L  +   D  + LF+ +   G+  D+ +YN LIN
Sbjct: 204 YKIFELMIK-QGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLIN 262

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +C  G+      +  ++     TP   T+T L+K L    RI  A  LF  ++  G  P
Sbjct: 263 GYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSP 322

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGN-------------GEFG----------- 156
            + TYT L++GLC+ G    A+++F  + +               G F            
Sbjct: 323 SLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIF 382

Query: 157 -----VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                V   P+ +TY+ + +GLCKEG + +A+ LF++M++     D +++  +IRGF   
Sbjct: 383 DEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQE 442

Query: 212 NDWNEAKCLFIEMMDQGVQPN 232
           N   +A      M ++   PN
Sbjct: 443 NQVQKAMEFLKRMREKNFSPN 463


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 177/344 (51%), Gaps = 9/344 (2%)

Query: 1   FCIFDYMLRMHPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
             + D M R   +P PP+  ++++     +   + + + + + L++ G   D+   N+++
Sbjct: 179 LAVLDEMPRRGCAPIPPM--YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVL 236

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           N  C  G V     +L  +      PD V++ +++KGLC   R      L  ++    C 
Sbjct: 237 NAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACP 296

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P++ T+ TLI+ LCR G       +  +M     E G  C PD   Y+TI DG+CKEG +
Sbjct: 297 PNIVTFNTLISYLCRNGLFERVHEVLAQMV----EHG--CTPDIRMYATIIDGICKEGHL 350

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           + A E+  +M    + P+VV Y +L++G C A  W E + L  EM D+    + VTFN++
Sbjct: 351 EVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNIL 410

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+NG +D    LLE M++ G  PD   Y T+++GFC  G ++ A  L  SM + GC
Sbjct: 411 VDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGC 470

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  SY I++ G C  +    A  L S+M+ +G     +T+NT
Sbjct: 471 KPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNT 514



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 173/341 (50%), Gaps = 9/341 (2%)

Query: 6   YMLRMHPS---PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++LR  PS    P V S+N +   L   K +  V  L + +  +   P++ T+N LI+  
Sbjct: 250 HLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYL 309

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G       VL +++    TPD   + ++I G+C E  +  A  +  ++ ++G KP+V
Sbjct: 310 CRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNV 369

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y TL+ GLC          L  EM      F   C  D +T++ + D  C+ G VD+ 
Sbjct: 370 VCYNTLLKGLCSAERWEETEELLAEM------FDKDCPLDDVTFNILVDFFCQNGLVDRV 423

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL  +M +    PDV+TYT++I GFC     +EA  L   M   G +PN +++ +++  
Sbjct: 424 IELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKG 483

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC   +  +A  L+  MIQ G   +   +NTL++  C  G V +A EL   M  NGC  D
Sbjct: 484 LCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 543

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + SY  +I+G  K  + + AL L + M++KG+ P  + Y++
Sbjct: 544 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSS 584



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 170/341 (49%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + M+RM   PP + +FN L   L +N  ++ V  +  ++   G  PD+  Y  +I+  
Sbjct: 286 LMEEMVRMA-CPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 344

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     +L R+      P+ V + +L+KGLC+  R  E   L  ++    C  D 
Sbjct: 345 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 404

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  L++  C+ G     + L E+M     E G  C PD ITY+T+ +G CKEG +D+A
Sbjct: 405 VTFNILVDFFCQNGLVDRVIELLEQML----EHG--CMPDVITYTTVINGFCKEGLIDEA 458

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M      P+ ++YT +++G C A  W +A+ L  +M+ QG   N +TFN ++N 
Sbjct: 459 VMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINF 518

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +++A  LL+ M+  G  PD   Y+T++DG    G+ + A EL   M + G   +
Sbjct: 519 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 578

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              Y  + +   +   I   + ++  +    IR   V YN 
Sbjct: 579 TIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNA 619



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 166/319 (52%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   L   + ++    L   +       D  T+NIL++ FC+ G V     +
Sbjct: 367 PNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIEL 426

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L     PD +T+T++I G C E  I EA  L   + A GCKP+  +YT ++ GLC 
Sbjct: 427 LEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCS 486

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A +L  +M          C  + IT++T+ + LCK+G V++A EL  +M     
Sbjct: 487 AERWVDAEDLMSQMIQQG------CPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGC 540

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD+++Y+++I G   A   +EA  L   M+++G+ PN + ++ I + L + G++++  +
Sbjct: 541 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQ 600

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + +    +R DA +YN ++   C  G   RA E    M S+GC+ +  +Y ILI G  
Sbjct: 601 MFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLA 660

Query: 315 KNKEIEGALSLYSEMLSKG 333
               ++ A  + +E+ SKG
Sbjct: 661 SEGFVKEAQEMLTELCSKG 679



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 149/284 (52%), Gaps = 8/284 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FNIL     +N   D V+ L +++   G  PD+ TY  +IN FCK G +    ++L  +
Sbjct: 406 TFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 465

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ +++T ++KGLC+  R ++A  L +++   GC  +  T+ TLIN LC+ G  
Sbjct: 466 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLV 525

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A+ L ++M  NG       C PD I+YST+ DGL K G  D+A EL   M ++ ++P+
Sbjct: 526 EQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 578

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + Y+S+          N+   +F  + D  ++ + V +N +++ LCK G+ + A   L 
Sbjct: 579 TIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLA 638

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            M+  G  P+ S Y  L+ G    G V  A+E+   + S G +R
Sbjct: 639 YMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGALR 682



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 112/292 (38%), Gaps = 47/292 (16%)

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
           +V  +SLI+ LCA  R  EAA   +          V  Y  ++ G CR G    A  L  
Sbjct: 95  SVRLSSLIRSLCAAGRTAEAARALSAAGGGA---GVVAYNAMVAGYCRAGQLESARRLAA 151

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
                     V   P+A TY  +   LC  G +  A  +  +M      P    Y  ++ 
Sbjct: 152 ---------AVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILE 202

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
             C    +  A  +  ++  +G   +V   N+++N +C  G +DEA  LL  +   G  P
Sbjct: 203 AACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEP 262

Query: 267 DASVYNTLMDGFCLTGR-----------------------------------VNRAKELF 291
           D   YN ++ G C+  R                                     R  E+ 
Sbjct: 263 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVL 322

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M  +GC  D+  Y  +I+G CK   +E A  + + M S G++P VV YNT
Sbjct: 323 AQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNT 374


>gi|356507504|ref|XP_003522504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Glycine max]
          Length = 555

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 175/345 (50%), Gaps = 21/345 (6%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V SF+ +F  L   K  D    LF  +   G  PDL  Y++LIN +CK+GR+    
Sbjct: 9   SVPSVISFSAIFSGLCHVKRADEAHRLFNVMKERGFQPDLICYSVLINGYCKLGRLEEAI 68

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
             L  + R         ++SLI G  +  R  EA A + ++   G  PDV  YT LI GL
Sbjct: 69  SFLRLLERDGLALGIKGYSSLIAGFFSARRYNEAHAWYGRMFKKGIVPDVVLYTILIRGL 128

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
              G    A  +  EM     + G+V  PDA+ Y+ I  GLC  G +D+A+ L L++ + 
Sbjct: 129 SSEGRVGEAAKMLGEMI----QIGLV--PDAVCYNEIIKGLCDVGLLDRARSLQLEISEH 182

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
               +V T+T +I   C      +A+ +F +M   G  P++VTFN +M+ LCK GK++EA
Sbjct: 183 QGFHNVCTHTIIICDLCKRGMAEKAQEIFNKMEKLGCFPSIVTFNALMDGLCKAGKLEEA 242

Query: 253 SRLLELMIQIGVRP--------------DASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
             LL  M +IG  P              D+      ++  C  G++  A +L + +  +G
Sbjct: 243 HLLLYKM-EIGRSPSLFFRLSQGSDQVLDSVALQKKVEQMCEAGQLLDAYKLLIQLAGSG 301

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M D+ +Y +LING+CK   I GAL L+ +M +KG+ P  VTY T
Sbjct: 302 VMPDIVTYNVLINGFCKASNINGALKLFKDMQNKGLSPNPVTYGT 346



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 156/342 (45%), Gaps = 28/342 (8%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H     VC+  I+   L K    +    +F ++  +G FP + T+N L++  CK G++  
Sbjct: 182 HQGFHNVCTHTIIICDLCKRGMAEKAQEIFNKMEKLGCFPSIVTFNALMDGLCKAGKLEE 241

Query: 71  GFVVL-----GRILRSCF--------TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
             ++L     GR     F          D+V     ++ +C   ++++A  L  +L   G
Sbjct: 242 AHLLLYKMEIGRSPSLFFRLSQGSDQVLDSVALQKKVEQMCEAGQLLDAYKLLIQLAGSG 301

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
             PD+ TY  LING C+  +   AL LF++M N          P+ +TY T+ DGL + G
Sbjct: 302 VMPDIVTYNVLINGFCKASNINGALKLFKDMQNKG------LSPNPVTYGTLIDGLFRVG 355

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD--QGVQPNVVT 235
             + A ++   M      P    Y +L+   C     ++A  L++E +   +G + N + 
Sbjct: 356 REEDAFKIHKHMLKHGCEPSFEVYRALMTWLCRKKRVSQAFSLYLEYLKNLRGREDNSIN 415

Query: 236 FNVIMNELCKNGKMDEASR-LLELMIQIGVRPDA-SVYNTLMDGFCLTGRVNRAKELFVS 293
               + E    G++++A R LLEL  +   R  A + Y  L+ GFC   +VN A  +F  
Sbjct: 416 ---ALEECFVRGEVEQAFRGLLELDFRF--RDFALAPYTILLIGFCQAEKVNEALLIFTV 470

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           ++      +  S   LI G  +N  ++ A++++   L KG +
Sbjct: 471 LDKFNININPASCVYLIRGLSENGRLDDAVNIFVYTLDKGFK 512


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 176/343 (51%), Gaps = 13/343 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ MLR+   P  V +FN L   L K         L  ++   G+  +L+T+NI I   
Sbjct: 203 LFNDMLRIGIFPD-VSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGL 261

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G +S    +L  ++R   TPD VT+ +LI GLC  S ++EA     KL   G +PD 
Sbjct: 262 CRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDG 321

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFV 179
           FTY TLI+G C+ G    A  + +         G +CK   PD  TY ++ +GLC+   +
Sbjct: 322 FTYNTLIDGYCKMGMLQNAEKILQ---------GAICKGFVPDEFTYCSLINGLCQNDEI 372

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           D+A  LF     + + P V+ Y  LI+G C      +A  +  EM + G   ++ T+N++
Sbjct: 373 DRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLV 432

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +N LCK G + +A+ L+   I  G  PD   +NTL+DG+C   ++    ++   M S+G 
Sbjct: 433 INGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGV 492

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             DV +Y  ++NG  K  + E  +  +  M+ KG  P  +TYN
Sbjct: 493 TPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYN 535



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 166/306 (54%), Gaps = 6/306 (1%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
            LF  +  IG+FPD+ T+N L++  CK G V     +L ++L+     +  TF   I+GL
Sbjct: 202 ELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGL 261

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C +  +  A ++   +   G  PDV TY TLI GLC+  + + A     ++ NG  E   
Sbjct: 262 CRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLE--- 318

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              PD  TY+T+ DG CK G +  A+++      +   PD  TY SLI G C  ++ + A
Sbjct: 319 ---PDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRA 375

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             LF   + +G++P V+ +N+++  LC+ G + +A +++  M + G   D   YN +++G
Sbjct: 376 LALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVING 435

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  G V+ A  L     + G + DVF++  LI+GYCK  ++E  + + ++M S G+ P 
Sbjct: 436 LCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPD 495

Query: 338 VVTYNT 343
           V+TYN+
Sbjct: 496 VITYNS 501



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 169/357 (47%), Gaps = 30/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L KN +         +L + GL PD +TYN LI+ +CKMG +     +
Sbjct: 284 PDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKI 343

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   +   F PD  T+ SLI GLC    I  A ALF      G KP V  Y  LI GLC+
Sbjct: 344 LQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQ 403

Query: 135 TGHTIVALNLFEEMA---------------NGNGEFGVVCK--------------PDAIT 165
            G  + AL +  EM+               NG  + G V                PD  T
Sbjct: 404 EGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFT 463

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++T+ DG CK+  ++   ++  KM    + PDV+TY S++ G   A    +    F  M+
Sbjct: 464 FNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMV 523

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++G  PN +T+N++   LCK GK++EA  L++ ++  G+ PD   + T++ GF   G + 
Sbjct: 524 EKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLK 583

Query: 286 RAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            A +LF  M E         +Y I+IN + +  ++     L+ EM + G  P   TY
Sbjct: 584 GAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTY 640



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 159/306 (51%), Gaps = 6/306 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           + +F+R++     P + +YN ++N   + G       V  R+      PD  TFT  IK 
Sbjct: 96  VDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKS 155

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
            C   R   A  L   + + GC+ +   Y T++ G     + + A  LF +M       G
Sbjct: 156 FCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDML----RIG 211

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
           +   PD  T++ +   LCK+G V +++ L  K+  + +  ++ T+   I+G C     + 
Sbjct: 212 IF--PDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSG 269

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  +   ++ +G+ P+VVT+N ++  LCKN  + EA + L  ++  G+ PD   YNTL+D
Sbjct: 270 AMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLID 329

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G+C  G +  A+++       G + D F+Y  LING C+N EI+ AL+L++  L KG++P
Sbjct: 330 GYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKP 389

Query: 337 TVVTYN 342
           TV+ YN
Sbjct: 390 TVILYN 395



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 159/326 (48%), Gaps = 7/326 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N+L   L +       L +   ++  G   D++TYN++IN  CKMG VS    +
Sbjct: 389 PTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNL 448

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +   +   + PD  TF +LI G C + ++     +  K+ + G  PDV TY +++NGL +
Sbjct: 449 MNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSK 508

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  +  FE M          C P+ ITY+ +T+ LCK G V++A +L  ++ ++ I
Sbjct: 509 AVKNEDLMETFETMVEKG------CVPNKITYNILTESLCKAGKVNEALDLVDEILNKGI 562

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEAS 253
            PD V++ ++I GF    D   A  LF  M +Q  V     T+N+++N   +   +    
Sbjct: 563 TPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGE 622

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L   M   G  PD   Y  ++DGFC+TG  +   +  + M   G +  + ++G +IN  
Sbjct: 623 KLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCL 682

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVV 339
           C    +  A+ +   M+  GI P VV
Sbjct: 683 CVQHRVHEAVDIIHFMVHNGIVPEVV 708



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 110/210 (52%), Gaps = 6/210 (2%)

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R G    A+++FE M   N      C+P  ++Y+ I + L + G+  +A ++FL+MK+  
Sbjct: 88  RKGKVQEAVDVFERMDFYN------CEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVG 141

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I PDV T+T  I+ FC     + A  L   M+ QG Q N V +  ++    +     EA 
Sbjct: 142 IVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAY 201

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   M++IG+ PD S +N L+   C  G V  ++ L   +   G   ++F++ I I G 
Sbjct: 202 ELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGL 261

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C+   + GA+S+   ++ +G+ P VVTYNT
Sbjct: 262 CRKGMLSGAMSMLDSVIREGLTPDVVTYNT 291



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 6/254 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           +   +K    + ++ EA  +F ++  + C+P V +Y  ++N L  +G+   A  +F  M 
Sbjct: 79  YIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMK 138

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           N     G+V  PD  T++      C+      A  L   M  +    + V Y +++ GF 
Sbjct: 139 N----VGIV--PDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFY 192

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
             N   EA  LF +M+  G+ P+V TFN +++ LCK G++ E+ RLL  +++ G+  +  
Sbjct: 193 EENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLF 252

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            +N  + G C  G ++ A  +  S+   G   DV +Y  LI G CKN  +  A     ++
Sbjct: 253 TFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKL 312

Query: 330 LSKGIRPTVVTYNT 343
           ++ G+ P   TYNT
Sbjct: 313 VNGGLEPDGFTYNT 326



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 7/225 (3%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V ++N +   L+K    + ++  F+ +   G  P+  TYNIL    CK G+V+ 
Sbjct: 490 HGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNE 549

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLI 129
              ++  IL    TPD V+F ++I G      +  A  LF ++   +       TY  +I
Sbjct: 550 ALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMI 609

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           N         +   LF EM  G       C PD  TY  + DG C  G  D   +  L+M
Sbjct: 610 NAFAEKLDLHMGEKLFLEMGAGG------CAPDTYTYRVMIDGFCITGNTDSGYKFLLEM 663

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
            ++   P + T+  +I   C  +  +EA  +   M+  G+ P VV
Sbjct: 664 IEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPEVV 708


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 175/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 91  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFCKDG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 151 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D+ +Y
Sbjct: 325 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 385 TMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYN 420



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 165/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A +L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +L   M+ NG    V +Y +L+NG
Sbjct: 367 KMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 147 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 206

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 207 YTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 266

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P   TY T
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 316



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +
Sbjct: 13  LHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGL 72

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E +   ++  +     T   ++        +      + ++++ G 
Sbjct: 73  ITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEDILECGY 132

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++    
Sbjct: 133 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 192

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 193 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 246


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 177/344 (51%), Gaps = 9/344 (2%)

Query: 1   FCIFDYMLRMHPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
             + D M R   +P PP+  ++++     +   + + + + + L++ G   D+   N+++
Sbjct: 142 LAVLDEMPRRGCAPIPPM--YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVL 199

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           N  C  G V     +L  +      PD V++ +++KGLC   R      L  ++    C 
Sbjct: 200 NAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACP 259

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P++ T+ TLI+ LCR G       +  +M     E G  C PD   Y+TI DG+CKEG +
Sbjct: 260 PNIVTFNTLISYLCRNGLFERVHEVLAQMV----EHG--CTPDIRMYATIIDGICKEGHL 313

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           + A E+  +M    + P+VV Y +L++G C A  W E + L  EM D+    + VTFN++
Sbjct: 314 EVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNIL 373

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+NG +D    LLE M++ G  PD   Y T+++GFC  G ++ A  L  SM + GC
Sbjct: 374 VDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGC 433

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  SY I++ G C  +    A  L S+M+ +G     +T+NT
Sbjct: 434 KPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNT 477



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 173/341 (50%), Gaps = 9/341 (2%)

Query: 6   YMLRMHPS---PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++LR  PS    P V S+N +   L   K +  V  L + +  +   P++ T+N LI+  
Sbjct: 213 HLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYL 272

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G       VL +++    TPD   + ++I G+C E  +  A  +  ++ ++G KP+V
Sbjct: 273 CRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNV 332

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y TL+ GLC          L  EM      F   C  D +T++ + D  C+ G VD+ 
Sbjct: 333 VCYNTLLKGLCSAERWEETEELLAEM------FDKDCPLDDVTFNILVDFFCQNGLVDRV 386

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL  +M +    PDV+TYT++I GFC     +EA  L   M   G +PN +++ +++  
Sbjct: 387 IELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKG 446

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC   +  +A  L+  MIQ G   +   +NTL++  C  G V +A EL   M  NGC  D
Sbjct: 447 LCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 506

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + SY  +I+G  K  + + AL L + M++KG+ P  + Y++
Sbjct: 507 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSS 547



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 170/341 (49%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + M+RM   PP + +FN L   L +N  ++ V  +  ++   G  PD+  Y  +I+  
Sbjct: 249 LMEEMVRMA-CPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 307

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     +L R+      P+ V + +L+KGLC+  R  E   L  ++    C  D 
Sbjct: 308 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  L++  C+ G     + L E+M     E G  C PD ITY+T+ +G CKEG +D+A
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQML----ERG--CMPDVITYTTVINGFCKEGLIDEA 421

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M      P+ ++YT +++G C A  W +A+ L  +M+ QG   N +TFN ++N 
Sbjct: 422 VMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINF 481

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +++A  LL+ M+  G  PD   Y+T++DG    G+ + A EL   M + G   +
Sbjct: 482 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 541

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              Y  + +   +   I   + ++  +    IR   V YN 
Sbjct: 542 TIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNA 582



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 166/319 (52%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   L   + ++    L   +       D  T+NIL++ FC+ G V     +
Sbjct: 330 PNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIEL 389

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L     PD +T+T++I G C E  I EA  L   + A GCKP+  +YT ++ GLC 
Sbjct: 390 LEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCS 449

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A +L  +M          C  + IT++T+ + LCK+G V++A EL  +M     
Sbjct: 450 AERWVDAEDLMSQMIQQG------CPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGC 503

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD+++Y+++I G   A   +EA  L   M+++G+ PN + ++ I + L + G++++  +
Sbjct: 504 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQ 563

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + +    +R DA +YN ++   C  G   RA E    M S+GC+ +  +Y ILI G  
Sbjct: 564 MFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLA 623

Query: 315 KNKEIEGALSLYSEMLSKG 333
               ++ A  + +E+ SKG
Sbjct: 624 SEGFVKEAQEMLTELCSKG 642



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 149/284 (52%), Gaps = 8/284 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FNIL     +N   D V+ L +++   G  PD+ TY  +IN FCK G +    ++L  +
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 428

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ +++T ++KGLC+  R ++A  L +++   GC  +  T+ TLIN LC+ G  
Sbjct: 429 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLV 488

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A+ L ++M  NG       C PD I+YST+ DGL K G  D+A EL   M ++ ++P+
Sbjct: 489 EQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 541

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + Y+S+          N+   +F  + D  ++ + V +N +++ LCK G+ + A   L 
Sbjct: 542 TIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLA 601

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            M+  G  P+ S Y  L+ G    G V  A+E+   + S G +R
Sbjct: 602 YMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGALR 645



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 112/292 (38%), Gaps = 47/292 (16%)

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
           +V  +SLI+ LCA  R  EAA   +          V  Y  ++ G CR G    A  L  
Sbjct: 58  SVRLSSLIRSLCAAGRTAEAARALSAAGGGA---GVVAYNAMVAGYCRAGQLESARRLAA 114

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
                     V   P+A TY  +   LC  G +  A  +  +M      P    Y  ++ 
Sbjct: 115 ---------AVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILE 165

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
             C    +  A  +  ++  +G   +V   N+++N +C  G +DEA  LL  +   G  P
Sbjct: 166 AACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEP 225

Query: 267 DASVYNTLMDGFCLTGR-----------------------------------VNRAKELF 291
           D   YN ++ G C+  R                                     R  E+ 
Sbjct: 226 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVL 285

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M  +GC  D+  Y  +I+G CK   +E A  + + M S G++P VV YNT
Sbjct: 286 AQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNT 337


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 176/363 (48%), Gaps = 41/363 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +++       K + +D    +F+ +       +  TYN++I+  C+ G V   F 
Sbjct: 242 PPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFG 301

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
               ++    +PDA T+ +L+ GLC   R+ EA AL  ++   G KP+V  Y TL++G  
Sbjct: 302 FKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFM 361

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A ++  EM +     GV  +P+ I Y  +  GLCK G + +A +L  +M    
Sbjct: 362 KEGKAAEAFDILNEMISA----GV--QPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVG 415

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD  TY  L++G     D + A  L  EM + G+ PN  T+ +++N LC+NG+  EA 
Sbjct: 416 HRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAG 475

Query: 254 RLLELMIQIGVRPDASV-----------------------------------YNTLMDGF 278
            LLE MI  G++P+A +                                   YN+L+ G 
Sbjct: 476 NLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGL 535

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
              GR+  A+E +  ++  G + D F+Y  LI+GYCK + +E A  L  +ML+ G++P  
Sbjct: 536 STVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNA 595

Query: 339 VTY 341
            TY
Sbjct: 596 DTY 598



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 165/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ I+   L +N       +L + + S GL P+ + Y  LI    K G +S     
Sbjct: 453 PNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACES 512

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + ++   PD   + SLIKGL    RI EA   + +++  G  PD FTY+ LI+G C+
Sbjct: 513 LENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCK 572

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T +   A  L ++M N         KP+A TY+ + +G  K    +K   +   M     
Sbjct: 573 TRNLEKADQLLQQMLNSG------LKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGD 626

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   Y  +IR    + +   A  +  E+   G+ P++  ++ +++ LCK   M++A  
Sbjct: 627 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVG 686

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M + G+ P    YN L+DGFC +G ++RA+ +F S+ + G + +  +Y  LI+G C
Sbjct: 687 LLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNC 746

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           KN +I  A  LY +ML +GI P    YN
Sbjct: 747 KNGDITDAFDLYKDMLDRGIAPDAFVYN 774



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 172/399 (43%), Gaps = 76/399 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   L K        +L   ++  GL P++  Y  L++ F K G+ +  F +
Sbjct: 313 PDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDI 372

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL------ 128
           L  ++ +   P+ + + +LI+GLC   ++  A+ L  ++   G +PD FTY  L      
Sbjct: 373 LNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQ 432

Query: 129 -----------------------------INGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                                        INGLC+ G +  A NL EEM +         
Sbjct: 433 HYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEG------L 486

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           KP+A  Y+ +  G  KEG +  A E    M   N+ PD+  Y SLI+G        EA+ 
Sbjct: 487 KPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEE 546

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + ++  +G+ P+  T++ +++  CK   +++A +LL+ M+  G++P+A  Y  L++G+ 
Sbjct: 547 YYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYF 606

Query: 280 LTGRVNRAKELFVSM-----------------------------------ESNGCMRDVF 304
            +    +   +  SM                                   E NG + D+ 
Sbjct: 607 KSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLH 666

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            Y  LI+G CK  ++E A+ L  EM  +G+ P +V YN 
Sbjct: 667 IYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNA 705



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 144/290 (49%), Gaps = 14/290 (4%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
           ++L++ + K G V     V+  +      P       L+K L       +A  L  KL+ 
Sbjct: 179 DVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLR----ADAMELVWKLKG 234

Query: 116 F----GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
           F    G  PDV+TY+T +   C+      A  +FEEM   +      C  + +TY+ +  
Sbjct: 235 FMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRD------CAMNEVTYNVMIS 288

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           GLC+ G V++A     +M D  ++PD  TY +L+ G C      EAK L  EM   G++P
Sbjct: 289 GLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKP 348

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           NVV +  +++   K GK  EA  +L  MI  GV+P+  +Y+ L+ G C  G++ RA +L 
Sbjct: 349 NVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL 408

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             M   G   D F+Y  L+ G+ ++ + +GA  L +EM + GI P   TY
Sbjct: 409 NEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTY 458



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 154/338 (45%), Gaps = 31/338 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +   ML     P      ++L G    N H + V S+ + +   G  PD + Y I+I   
Sbjct: 582 LLQQMLNSGLKPNADTYTDLLEGYFKSNDH-EKVSSILQSMLGSGDKPDNHIYGIVIRNL 640

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            +   +   F+VL  + ++   PD   ++SLI GLC  + + +A  L  ++   G +P +
Sbjct: 641 SRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGI 700

Query: 123 FTYTTLINGLCRTGHTIVALNLFEE-MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             Y  LI+G CR+G    A N+F+  +A G         P+ +TY+ + DG CK G +  
Sbjct: 701 VCYNALIDGFCRSGDISRARNVFDSILAKG-------LLPNCVTYTALIDGNCKNGDITD 753

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A +L+  M D  I PD   Y  L  G   A D  +A  L  EM ++G   +V  F+ ++ 
Sbjct: 754 AFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-HVSLFSTLVR 812

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK G++ E  +LL +M+   + P+A     ++  F   G++  A  +F  ++     +
Sbjct: 813 GFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQKKASQ 872

Query: 302 ---DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
              D FS                   L+++M++KG+ P
Sbjct: 873 SSTDRFSL------------------LFTDMINKGLIP 892



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 98/187 (52%)

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
           G    PD  TYST  +  CK    D AK++F +M+  +   + VTY  +I G C +    
Sbjct: 238 GAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVE 297

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA     EM+D G+ P+  T+  +MN LCK G++ EA  LL+ M   G++P+  VY TL+
Sbjct: 298 EAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLV 357

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           DGF   G+   A ++   M S G   +   Y  LI G CK  ++  A  L +EM+  G R
Sbjct: 358 DGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHR 417

Query: 336 PTVVTYN 342
           P   TY+
Sbjct: 418 PDTFTYH 424



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 125/292 (42%), Gaps = 49/292 (16%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP------------------------ 120
           P A  F  L   LCA S   +A  L  ++      P                        
Sbjct: 113 PSADAFARLAASLCAASHFPQANGLLHQMILAHPHPPLVLASIQRAIQDSDARSPSPSPS 172

Query: 121 ------DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
                 DV   T   NG  RT   +V +          G+ G+             +GL 
Sbjct: 173 HSTAVLDVLVDTYKKNGSVRTAAQVVLMM---------GDLGLA------PTRRCCNGLL 217

Query: 175 KEGFVDKAKELFLKMKD----ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           K+     A EL  K+K       I PDV TY++ +   C A D++ AK +F EM  +   
Sbjct: 218 KDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCA 277

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            N VT+NV+++ LC++G ++EA    E M+  G+ PDA  Y  LM+G C  GR+  AK L
Sbjct: 278 MNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKAL 337

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              M  +G   +V  Y  L++G+ K  +   A  + +EM+S G++P  + Y+
Sbjct: 338 LDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYD 389


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 173/365 (47%), Gaps = 37/365 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F IL   L ++   +    L  R+  +G  PD   YN LI+ + K       F  
Sbjct: 40  PDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 99

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++++   P  VT+T+++ GLC   R  +A  L  ++R  GC P+++TY  ++ GLC 
Sbjct: 100 LAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 159

Query: 135 TGHTIVALNLFEEMA---------NGNGEFGVVCK-----------------PDAITYST 168
                 A  + EEMA           N     +CK                 PD ++Y+T
Sbjct: 160 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTT 219

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           + +GLCK G +D A  +   M +    PDVVTY+SLI GFC   +   A  L   M+  G
Sbjct: 220 VINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLG 279

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
            +PN+V +N ++  L + G + +A  +L  M + G  PD   YN  +DG C   RV +AK
Sbjct: 280 CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAK 339

Query: 289 ELFVSMESNGC----------MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI-RPT 337
            +F  M   GC          + D+  Y +L++G CK    + A +L+S++L + I  P 
Sbjct: 340 AVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPD 399

Query: 338 VVTYN 342
           V  YN
Sbjct: 400 VFFYN 404



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 167/327 (51%), Gaps = 9/327 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N L   L +   +D   ++F+ +      PD +T+ IL+   C+  ++     +LG
Sbjct: 7   VFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLG 66

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R+      PD   + +LI G        +A     ++    C P V TYT +++GLC+  
Sbjct: 67  RMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAE 126

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            T  A+ L +EM +        C P+  TY+ I +GLC+E  +D+AK++  +M      P
Sbjct: 127 RTRDAVKLLDEMRDKG------CSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFP 180

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DVVTY S I+G C  +  +EA+     M    V P+VV++  ++N LCK+G +D ASR+L
Sbjct: 181 DVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRML 237

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M   G  PD   Y++L+DGFC  G V RA  L  SM   GC  ++ +Y  L+    + 
Sbjct: 238 DHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRL 297

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             I  A  +  EM  +G  P VV+YN 
Sbjct: 298 GHIGKAEDMLVEMERRGFTPDVVSYNA 324



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 154/298 (51%), Gaps = 9/298 (3%)

Query: 46  IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME 105
           +G   +++TYN L+    +  R      V   ++     PDA TF  L++GLC  +++ +
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEK 60

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           A  L  +++  GC PD   Y  LI+G  +      A     EM   +      C P  +T
Sbjct: 61  ARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNH------CLPTVVT 114

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ I DGLCK      A +L  +M+D+  +P++ TY  ++ G C     +EAK +  EM 
Sbjct: 115 YTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMA 174

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            +G  P+VVT+N  +  LCK  ++DEA + L  M    V PD   Y T+++G C +G ++
Sbjct: 175 VRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLD 231

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A  +   M + GC  DV +Y  LI+G+CK  E+E A+ L   ML  G RP +V YN+
Sbjct: 232 SASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNS 289



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 179/348 (51%), Gaps = 23/348 (6%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P + ++N++   L + +  D    + + +   G FPD+ TYN  I   CK  R
Sbjct: 138 MRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDR 197

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V      L R+     TPD V++T++I GLC    +  A+ +   +   GC PDV TY++
Sbjct: 198 VDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSS 254

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+G C+ G    A+ L + M        + C+P+ + Y+++   L + G + KA+++ +
Sbjct: 255 LIDGFCKGGEVERAMGLLDSM------LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLV 308

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN----------VVTFN 237
           +M+     PDVV+Y + I G C A    +AK +F  M+++G  PN          ++ + 
Sbjct: 309 EMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYT 368

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGV-RPDASVYNTLMDGFCLTGRVNRAKELFVSM-E 295
           V+++ LCK G+ DEA  L   ++   +  PD   YN ++D  C   ++++A ++   M E
Sbjct: 369 VLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE 428

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            N C  +V ++ IL++G C +  +  A ++   M+ +G  P  VTY T
Sbjct: 429 KNCC--NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGT 474



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L     K    +  + L   +  +G  P++  YN L+    ++G +     +
Sbjct: 247 PDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDM 306

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP----------DVFT 124
           L  + R  FTPD V++ + I GLC   R+ +A A+F ++   GC P          D+  
Sbjct: 307 LVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILL 366

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           YT L++GLC+ G    A  LF ++ +       +C+PD   Y+ + D  CK   +DKA +
Sbjct: 367 YTVLLDGLCKGGRFDEACALFSKVLDEK-----ICEPDVFFYNVMLDSHCKRRQIDKALQ 421

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +  +M ++N   +VVT+  L+ G C  +  ++A+ + + M+D+G  P+ VT+  +++ +C
Sbjct: 422 IHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMC 480

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K GK   A  L E  ++ G  PD   Y+ L+ G         A  LF  +     + D  
Sbjct: 481 KCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDK 540

Query: 305 SYGIL 309
           + G+L
Sbjct: 541 TLGLL 545



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 134/297 (45%), Gaps = 19/297 (6%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML++   P  V ++N L G L +  H      +   +   G  PD+ +YN  I+  
Sbjct: 271 LLDSMLKLGCRPNMV-AYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 329

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTF----------TSLIKGLCAESRIMEAAALFTK 112
           CK  RV     V  R++    TP+A ++          T L+ GLC   R  EA ALF+K
Sbjct: 330 CKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSK 389

Query: 113 -LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
            L    C+PDVF Y  +++  C+      AL + ++M   N      C  + +T++ +  
Sbjct: 390 VLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKN-----CC--NVVTWNILVH 442

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           GLC +  +  A+ + L M DE   PD VTY +L+   C       A  LF E +  G  P
Sbjct: 443 GLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVP 502

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           +VVT++ ++  L      +EA  L   +++    PD      L     L  +  +A+
Sbjct: 503 DVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLLHRKLKLLNKPRKAE 559


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 179/336 (53%), Gaps = 8/336 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P V  +N+L G L + K       +F  + +I L   + TYN LI+ +CK+G 
Sbjct: 202 MRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGE 261

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +   F +  R+      P+ +TF SL+ GLC   ++ EA +L  ++   G  PD +TY+ 
Sbjct: 262 LDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSI 321

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L +GL R      A+ L+E+      E G+  + +  T S + +GLCK+G V+KA+E+  
Sbjct: 322 LFDGLLRCDDGNGAMELYEQAT----EKGI--RINNYTGSILLNGLCKQGKVEKAEEILK 375

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKN 246
           K  +  +  D V Y + + G+C   D N+A  L IE M+  G++PN +TFN ++++ C  
Sbjct: 376 KFTENGLVADEVIYNTFVNGYCRIGDMNKA-ILTIERMESFGLRPNSITFNSLIDKFCDM 434

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            +MD+A   ++ M + GV P    YNTL+DG+      +R  ++   ME  G   +V SY
Sbjct: 435 KEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSY 494

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G LIN  CK+ +I  A  +  +M+ +G+ P    YN
Sbjct: 495 GSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYN 530



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L   L K +      SL K +   G  PD YTY+IL +   +    +    +
Sbjct: 279 PNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMEL 338

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +        +  T + L+ GLC + ++ +A  +  K    G   D   Y T +NG CR
Sbjct: 339 YEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCR 398

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+   E M +    FG+  +P++IT++++ D  C    +DKA+E   KM ++ +
Sbjct: 399 IGDMNKAILTIERMES----FGL--RPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGV 452

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V TY +LI G+     ++    +  +M + GV+PNVV++  ++N LCK+GK+ EA  
Sbjct: 453 TPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEI 512

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  MI  GV P+A VYN L+DG C+ G+V  A   F  M  +     + +Y +LI+G C
Sbjct: 513 VLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLC 572

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++  A    +++ S G  P V+TYN+
Sbjct: 573 KKGKLTEAEDFLTQITSSGHSPDVITYNS 601



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 158/313 (50%), Gaps = 6/313 (1%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
           K +  V+ LF  + + G   D + Y   I    K+  +  G   L  + +    P+   +
Sbjct: 155 KQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIY 214

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
             LI GLC E RI +A  +F ++        + TY TLI+G C+ G    A  + E M  
Sbjct: 215 NVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKE 274

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
            +        P+ IT++++  GLCK   + +A+ L  +M+     PD  TY+ L  G   
Sbjct: 275 KS------VAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLR 328

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
            +D N A  L+ +  ++G++ N  T ++++N LCK GK+++A  +L+   + G+  D  +
Sbjct: 329 CDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVI 388

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           YNT ++G+C  G +N+A      MES G   +  ++  LI+ +C  KE++ A     +M 
Sbjct: 389 YNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMA 448

Query: 331 SKGIRPTVVTYNT 343
            KG+ P+V TYNT
Sbjct: 449 EKGVTPSVETYNT 461



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 158/323 (48%), Gaps = 7/323 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +IL   L K    +    + K+    GL  D   YN  +N +C++G ++   + + R+  
Sbjct: 355 SILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMES 414

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P+++TF SLI   C    + +A     K+   G  P V TY TLI+G  +      
Sbjct: 415 FGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDR 474

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
              + E+M     E GV  KP+ ++Y ++ + LCK+G + +A+ +   M    + P+   
Sbjct: 475 CFQILEQME----EIGV--KPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQV 528

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  LI G C      +A   F EMM   + P +VT+NV+++ LCK GK+ EA   L  + 
Sbjct: 529 YNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQIT 588

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             G  PD   YN+L+ G+   G V++   L+ +M++ G    V +Y  LI+G C  + IE
Sbjct: 589 SSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISG-CSKEGIE 647

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
               LY+EML   + P  V YN 
Sbjct: 648 LVEKLYNEMLQMNLLPDRVVYNA 670



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 154/324 (47%), Gaps = 7/324 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K   +D    + +++  IG+ P++ +Y  LINC CK G++    +V
Sbjct: 454 PSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIV 513

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+A  +  LI G C   ++ +A   F ++      P + TY  LI+GLC+
Sbjct: 514 LRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCK 573

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +   ++ +          PD ITY+++  G    G V K   L+  MK+  I
Sbjct: 574 KGKLTEAEDFLTQITSSGH------SPDVITYNSLISGYANAGNVSKCLGLYETMKNLGI 627

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V TY  LI G C        + L+ EM+   + P+ V +N +++   + G   +A  
Sbjct: 628 KPTVRTYHPLISG-CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYS 686

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+  G+ PD   YN+L+ G    G+++  K+L  +M++        +Y IL+ G+C
Sbjct: 687 LHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHC 746

Query: 315 KNKEIEGALSLYSEMLSKGIRPTV 338
             K+  GA   Y EM+     P  
Sbjct: 747 DLKDFSGAYVWYREMVENNFLPNA 770



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 142/319 (44%), Gaps = 42/319 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+  L  CL K+        + + +   G+ P+   YN+LI+  C +G+V      
Sbjct: 489 PNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRF 548

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++RS  +P  VT+  LI GLC + ++ EA    T++ + G  PDV TY +LI+G   
Sbjct: 549 FDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYAN 608

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+    L L+E M N     G+  KP   TY  +  G  KEG ++  ++L+ +M   N+
Sbjct: 609 AGNVSKCLGLYETMKN----LGI--KPTVRTYHPLISGCSKEG-IELVEKLYNEMLQMNL 661

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD V Y ++I  +    +  +A  L   M+DQG+ P+ +T+N ++    + GK+     
Sbjct: 662 LPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKD 721

Query: 255 LL------EL-----------------------------MIQIGVRPDASVYNTLMDGFC 279
           L+      EL                             M++    P+AS+ N L  G  
Sbjct: 722 LVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLE 781

Query: 280 LTGRVNRAKELFVSMESNG 298
             GR+   + +   M   G
Sbjct: 782 QEGRLQEVQVICSEMNVKG 800


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 171/338 (50%), Gaps = 9/338 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKM 65
           +LR  P P  V ++N +             L + + +   G + P+ YTY  +I+ +CK+
Sbjct: 510 LLRQMPRPNAV-TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 568

Query: 66  GRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
           GRV     V   +L +    P+AV + +LI G C + ++  A     ++   G    V T
Sbjct: 569 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 628

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  L++ L   G    A  L EEM       G    PD  TY+ + +G CKEG V KA E
Sbjct: 629 YNLLVHALFMDGRGTEAYELVEEMG------GKGLAPDVFTYNILINGHCKEGNVKKALE 682

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +F  M    +   VVTYT+LI          E   LF E + +G++P++V +N ++N   
Sbjct: 683 IFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 742

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
            +G +D A  ++  M +  + PD   YNTLM G CL GRV+ A++L   M   G   D+ 
Sbjct: 743 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLV 802

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +Y  LI+GY    +++ AL + +EM++KG  PT++TYN
Sbjct: 803 TYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 840



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 144/271 (53%), Gaps = 8/271 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+L   L  +        L + +   GL PD++TYNILIN  CK G V     +  
Sbjct: 626 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 685

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + R       VT+T+LI  L  + ++ E   LF +    G +PD+  Y  LIN    +G
Sbjct: 686 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 745

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +   A  +  EM            PD +TY+T+  GLC  G VD+A++L  +M +  I P
Sbjct: 746 NIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP 799

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D+VTY +LI G+    D  +A  +  EMM++G  P ++T+N ++  LCKNG+ D+A  ++
Sbjct: 800 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 859

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           + M++ G+ PD S Y +L++G  LT    RA
Sbjct: 860 KEMVENGITPDDSTYISLIEG--LTTEDERA 888



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 178/395 (45%), Gaps = 76/395 (19%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSI----------------------GLFPDLY 53
           P    N+L    A  + + T L L+ R+ S+                       LF D++
Sbjct: 421 PSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAPAFALFADMF 480

Query: 54  ---------TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104
                    T+NI++   C  G+ +        +LR    P+AVT+ ++I G C+  R+ 
Sbjct: 481 RLRLPLCTTTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQ 536

Query: 105 EAAALFTKLRAFG-CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
            A  +  ++R  G   P+ +TY T+I+G C+ G    A+ +F+EM    GE     KP+A
Sbjct: 537 AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLT-KGE----VKPEA 591

Query: 164 ITYSTITDGLCKEGFVD-----------------------------------KAKELFLK 188
           + Y+ +  G C +G +D                                   +A EL  +
Sbjct: 592 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 651

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M  + + PDV TY  LI G C   +  +A  +F  M  +GV+  VVT+  ++  L K G+
Sbjct: 652 MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQ 711

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + E  +L +  ++ G+RPD  +YN L++    +G ++RA E+   ME      D  +Y  
Sbjct: 712 VQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNT 771

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L+ G C    ++ A  L  EM  +GI+P +VTYNT
Sbjct: 772 LMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNT 806



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 6/316 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ML      P    +N L G        DT L    R+   G+   + TYN+L++  
Sbjct: 577 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 636

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              GR +  + ++  +      PD  T+  LI G C E  + +A  +F  +   G +  V
Sbjct: 637 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 696

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LI  L + G       LF+E            +PD + Y+ + +     G +D+A
Sbjct: 697 VTYTALIYALSKKGQVQETDKLFDEAVRRG------IRPDLVLYNALINSHSTSGNIDRA 750

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+  +M+ + I PD VTY +L+RG C     +EA+ L  EM ++G+QP++VT+N +++ 
Sbjct: 751 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISG 810

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
               G + +A R+   M+  G  P    YN L+ G C  G+ + A+ +   M  NG   D
Sbjct: 811 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 870

Query: 303 VFSYGILINGYCKNKE 318
             +Y  LI G     E
Sbjct: 871 DSTYISLIEGLTTEDE 886


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 181/329 (55%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + N +   L K      V  LF  +   G+ P + TYN LIN     G V+  + V
Sbjct: 136 PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEV 195

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+ VT+T++I  LC E  I +A  LF +++  G +P+++TY  L++   +
Sbjct: 196 WDQMVARRIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFK 255

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL  + ++     + G+V  P+ + ++T+ DGLC+   + +AK +FL M    +
Sbjct: 256 RDNIKHALVFYYDLL----KCGLV--PNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEV 309

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V  Y SLI G   +    EA   F E++ +G++P+  T ++++  LC  G+M  A+R
Sbjct: 310 APTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATR 369

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            LE+M Q G+  +A+ YN L+D +C +G ++ A      M   G   +V +Y  LI+G+ 
Sbjct: 370 FLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHS 429

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           KN E+E A+++Y+EM++KG+ P VVTY  
Sbjct: 430 KNGEMEIAMAIYTEMVAKGVEPNVVTYTA 458



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 171/393 (43%), Gaps = 70/393 (17%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L +         LF  +   G+ P+LYTYN L++   K   +    V 
Sbjct: 206 PNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVF 265

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+    P+ V FT+LI GLC  +RI EA  +F  +  +   P V  Y +LI+G  R
Sbjct: 266 YYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFR 325

Query: 135 TGHTIVALNLFEEMAN------------------GNGEFGVVCK-----------PDAIT 165
           +G+   AL  F+E+                      G+  V  +            +A  
Sbjct: 326 SGYAQEALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAA 385

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ + D  CK G +D+A     +M +  + P+VVTY+SLI G     +   A  ++ EM+
Sbjct: 386 YNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMV 445

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC------ 279
            +GV+PNVVT+  +++   KNG MD A  L + M + G+  +A   + L+DG C      
Sbjct: 446 AKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQ 505

Query: 280 -----------------------------------LTGRVNRAKELFVSMESNGCMRDVF 304
                                              + G+ N A   F  M  +G + D F
Sbjct: 506 DAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRF 565

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           +Y ++I G C    +  A+ LY++M+  G++PT
Sbjct: 566 TYTLVIRGLCMLGYVLNAMMLYADMVKVGVKPT 598



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 156/325 (48%), Gaps = 9/325 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +  +L   L++    D  LS+F RL  +   P L   N +++   K   ++  + +   +
Sbjct: 108 ALGVLVIALSQMALPDEALSVFGRLREL---PALPACNAILDGLVKAHMLARVWELFDEM 164

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L     P  VT+ +LI     +  + +A  ++ ++ A    P+V TYTT+I  LC     
Sbjct: 165 LGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCI 224

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LF EM     E G+  +P+  TY+ +     K   +  A   +  +    + P+ 
Sbjct: 225 GDAEGLFLEMK----EAGM--RPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPND 278

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V +T+LI G C AN   EAK +F++M    V P V  +N +++   ++G   EA    + 
Sbjct: 279 VIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQE 338

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           +I+ G+RPD    + ++ G C  G++  A      M+ +G   +  +Y +LI+ YCK+  
Sbjct: 339 IIRKGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGN 398

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ AL   + M   G+ P VVTY++
Sbjct: 399 LDEALVTCTRMSEVGVEPNVVTYSS 423


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 175/329 (53%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++ +L   L     ++    L  ++   GL P++ TYN LIN +CK G +     V
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDV 415

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +     +P+  T+  LIKG C +S + +A  +  K+      PDV TY +LI+G CR
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYC-KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+   A  L   M     + G+V  PD  TY+++ D LCK   V++A +LF  ++ + +
Sbjct: 475 SGNFDSAYRLLSLM----NDRGLV--PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NP+VV YT+LI G+C A   +EA  +  +M+ +   PN +TFN +++ LC +GK+ EA+ 
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATL 588

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M++IG++P  S    L+      G  + A   F  M S+G   D  +Y   I  YC
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC 648

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   +  A  + ++M   G+ P + TY++
Sbjct: 649 REGRLLDAEDMMAKMRENGVSPDLFTYSS 677



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 185/388 (47%), Gaps = 65/388 (16%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L   LA+    D +  ++  +    + P++YTYN ++N +CK+G V      + +I+
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 80  RSCFTPDAVTFTSL-----------------------------------IKGLCAESRIM 104
            +   PD  T+TSL                                   I GLC   RI 
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV------- 157
           EA  LF K++   C P V TYT LI  LC +     ALNL +EM     +  +       
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365

Query: 158 -----VCK-----------------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                 CK                 P+ ITY+ + +G CK G ++ A ++   M+   ++
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+  TY  LI+G+C +N  ++A  +  +M+++ V P+VVT+N +++  C++G  D A RL
Sbjct: 426 PNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           L LM   G+ PD   Y +++D  C + RV  A +LF S+E  G   +V  Y  LI+GYCK
Sbjct: 485 LSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCK 544

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +++ A  +  +MLSK   P  +T+N 
Sbjct: 545 AGKVDEAHLMLEKMLSKNCLPNSLTFNA 572



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 162/329 (49%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   L  ++     L+L K +   G+ P+++TY +LI+  C   +      +
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG++L     P+ +T+ +LI G C    I +A  +   + +    P+  TY  LI G C+
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +       N+ + M   N        PD +TY+++ DG C+ G  D A  L   M D  +
Sbjct: 441 S-------NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGL 493

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TYTS+I   C +    EA  LF  +  +GV PNVV +  +++  CK GK+DEA  
Sbjct: 494 VPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHL 553

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +LE M+     P++  +N L+ G C  G++  A  L   M   G    V +  ILI+   
Sbjct: 554 MLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLL 613

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+ + + A S + +MLS G +P   TY T
Sbjct: 614 KDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 161/327 (49%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K    +  + + + + S  L P+  TYN LI  +CK   V     V
Sbjct: 391 PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGV 449

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L     PD VT+ SLI G C       A  L + +   G  PD +TYT++I+ LC+
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A +LF+ +     + GV   P+ + Y+ + DG CK G VD+A  +  KM  +N 
Sbjct: 510 SKRVEEACDLFDSLE----QKGV--NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNC 563

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +T+ +LI G C      EA  L  +M+  G+QP V T  ++++ L K+G  D A  
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + M+  G +PDA  Y T +  +C  GR+  A+++   M  NG   D+F+Y  LI GY 
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYG 683

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
              +   A  +   M   G  P+  T+
Sbjct: 684 DLGQTNFAFDVLKRMRDTGCEPSQHTF 710



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 162/313 (51%), Gaps = 12/313 (3%)

Query: 36  VLSLFKRLNSIGLFPDLYT-----YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
           VL L +++N    F   Y      YN L+N   + G V     V   +L     P+  T+
Sbjct: 162 VLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTY 221

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
             ++ G C    + EA    +K+   G  PD FTYT+LI G C+      A  +F EM  
Sbjct: 222 NKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPL 281

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
                   C+ + + Y+ +  GLC    +D+A +LF+KMKD+   P V TYT LI+  C 
Sbjct: 282 KG------CRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCG 335

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
           +   +EA  L  EM + G++PN+ T+ V+++ LC   K ++A  LL  M++ G+ P+   
Sbjct: 336 SERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVIT 395

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           YN L++G+C  G +  A ++   MES     +  +Y  LI GYCK+  +  A+ + ++ML
Sbjct: 396 YNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKML 454

Query: 331 SKGIRPTVVTYNT 343
            + + P VVTYN+
Sbjct: 455 ERKVLPDVVTYNS 467



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 156/378 (41%), Gaps = 60/378 (15%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     ++ ++D+   L   +N  GL PD +TY  +I+  CK  RV     +
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+ V +T+LI G C   ++ EA  +  K+ +  C P+  T+  LI+GLC 
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCA 579

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L E+M        +  +P   T + +   L K+G  D A   F +M     
Sbjct: 580 DGKLKEATLLEEKMVK------IGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGT 633

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN------------- 241
            PD  TYT+ I+ +C      +A+ +  +M + GV P++ T++ ++              
Sbjct: 634 KPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFD 693

Query: 242 -------------------------------------ELCKNGKM---DEASRLLELMIQ 261
                                                ELC    M   D    LLE M++
Sbjct: 694 VLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVE 753

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYGILINGYCKNKEIE 320
             V P+A  Y  L+ G C  G +  A+++F  M+ N G       +  L++  CK K+  
Sbjct: 754 HSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHN 813

Query: 321 GALSLYSEMLSKGIRPTV 338
            A  +  +M+  G  P +
Sbjct: 814 EAAKVVDDMICVGHLPQL 831



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 152/329 (46%), Gaps = 24/329 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +  IL   L K+  +D   S F+++ S G  PD +TY   I  +C+ GR+     +
Sbjct: 600 PTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDM 659

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++  +  +PD  T++SLIKG     +   A  +  ++R  GC+P   T+ +LI  L  
Sbjct: 660 MAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLL- 718

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                       EM  G  +     +P+    S + +        D   EL  KM + ++
Sbjct: 719 ------------EMKYGKQKGS---EPELCAMSNMME-------FDTVVELLEKMVEHSV 756

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMM-DQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            P+  +Y  LI G C   +   A+ +F  M  ++G+ P+ + FN +++  CK  K +EA+
Sbjct: 757 TPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAA 816

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           ++++ MI +G  P       L+ G    G   R   +F ++   G   D  ++ I+I+G 
Sbjct: 817 KVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGV 876

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            K   +E    L++ M   G + +  TY+
Sbjct: 877 GKQGLVEAFYELFNVMEKNGCKFSSQTYS 905



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 54/129 (41%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD+M R     P    FN L  C  K K ++    +   +  +G  P L +  +LI   
Sbjct: 782 VFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGL 841

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G    G  V   +L+  +  D + +  +I G+  +  +     LF  +   GCK   
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSS 901

Query: 123 FTYTTLING 131
            TY+ LI G
Sbjct: 902 QTYSLLIEG 910


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 182/358 (50%), Gaps = 34/358 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++NIL   L KN   D    LF  +++ G  PD  TY  +++  CK G++     +
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            GR     F P    + +LI G+C E RI  A  L  ++   G  P+V +Y+ +IN LC 
Sbjct: 237 AGR-----FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCV 291

Query: 135 TGHTIVALNLFEEM------ANGNGEFGVV-----------------------CKPDAIT 165
           +G+  +A  LF +M      AN +    ++                       C+P+ + 
Sbjct: 292 SGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA 351

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+  GLC  G +++A ++  +M+     P+V TY+ LI GF  + D   A   +  M+
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMI 411

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G +PNVVT+  +++ LCKN   D+A+ L+E M   G  P+   +NT + G C  GRV 
Sbjct: 412 SHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVE 471

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A +L   M+ +GC+ ++ +Y  L++   +  + E A  L+ E+ ++ ++P +VTYNT
Sbjct: 472 WAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNT 529



 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 11/308 (3%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           +  L +F R+   G  P +  YN L++      +      +   + +    P+  T+  L
Sbjct: 126 EQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNIL 185

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           +K LC   R+  A  LF ++   GC PD  TYTT+++ LC+ G    A     E+A   G
Sbjct: 186 LKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA----RELA---G 238

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
            F    KP    Y+ + DG+CKEG ++ A +L  +M D  ++P+VV+Y+ +I   C + +
Sbjct: 239 RF----KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN 294

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
              A  LF +M  +G   N+ TF  ++      GK+ EA  L +LMIQ G  P+   YNT
Sbjct: 295 VELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNT 354

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ G C  G +  A ++   M+ +GC+ +V +Y ILI+G+ K+ ++ GA   ++ M+S G
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHG 414

Query: 334 IRPTVVTY 341
            RP VVTY
Sbjct: 415 CRPNVVTY 422



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 172/329 (52%), Gaps = 11/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   L     +  +  L+  +   GL P+++TYNIL+   CK  RV     +
Sbjct: 142 PTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKL 201

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PDAVT+T+++  LC   +I +A  L  +      KP V  Y  LI+G+C+
Sbjct: 202 FVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRF-----KPSVPVYNALIDGMCK 256

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA+ L  EM + NG       P+ ++YS I + LC  G V+ A  LF +M     
Sbjct: 257 EGRIEVAIKLLGEMMD-NG-----VDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGC 310

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + ++ T+T LI+G        EA  L+  M+  G +PNVV +N +++ LC NG ++EA +
Sbjct: 311 DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQ 370

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M + G  P+ + Y+ L+DGF  +G +  A E +  M S+GC  +V +Y  +++  C
Sbjct: 371 VCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLC 430

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           KN   + A SL  +M  +G  P  +T+NT
Sbjct: 431 KNSMFDQANSLVEKMTLEGCTPNTMTFNT 459



 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 167/336 (49%), Gaps = 11/336 (3%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R  PS P    +N L   + K    +  + L   +   G+ P++ +Y+ +IN  C  G V
Sbjct: 239 RFKPSVP---VYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295

Query: 69  SPGFVVLGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
              F +  ++ LR C   +  TFT LIKG     ++ EA  L+  +   GC+P+V  Y T
Sbjct: 296 ELAFALFAQMFLRGC-DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNT 354

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+GLC  G    AL + ++M          C P+  TYS + DG  K G +  A E + 
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSG------CLPNVTTYSILIDGFAKSGDLVGASETWN 408

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M      P+VVTYT ++   C  + +++A  L  +M  +G  PN +TFN  +  LC NG
Sbjct: 409 RMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNG 468

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           +++ A +LLE M   G  P+ + YN L+D      +   A  LF  +E+     ++ +Y 
Sbjct: 469 RVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYN 528

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++ G+ +   +  AL L+ + L +G  P  +TYNT
Sbjct: 529 TVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNT 564



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 164/323 (50%), Gaps = 8/323 (2%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           ++ GC  + K Y+  L L+K +   G  P++  YN LI+  C  G +     V  ++ RS
Sbjct: 320 LIKGCFMRGKLYEA-LDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS 378

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
              P+  T++ LI G      ++ A+  + ++ + GC+P+V TYT +++ LC+      A
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
            +L E+M          C P+ +T++T   GLC  G V+ A +L  +M+     P++ TY
Sbjct: 439 NSLVEKMTLEG------CTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTY 492

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
             L+      N + EA  LF E+  + +QPN+VT+N ++    + G M EA +L    + 
Sbjct: 493 NELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALV 552

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-NGCMRDVFSYGILINGYCKNKEIE 320
            G  PD+  YNT++  +C  G+V  A +L   + S      D+ +Y  LI G C    IE
Sbjct: 553 RGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIE 612

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A++   + +++GI P   T+N 
Sbjct: 613 EAMAFLDKAINQGICPNFATWNA 635



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 157/320 (49%), Gaps = 7/320 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L  N   +  L +  ++   G  P++ TY+ILI+ F K G +      
Sbjct: 347 PNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASET 406

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++     P+ VT+T ++  LC  S   +A +L  K+   GC P+  T+ T I GLC 
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCG 466

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ L E M  G+G     C P+  TY+ + D L +    ++A  LF +++  N+
Sbjct: 467 NGRVEWAMKLLERM-QGHG-----CLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNL 520

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++VTY +++ GF  A    EA  LF + + +G  P+ +T+N +++  CK GK+  A++
Sbjct: 521 QPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQ 580

Query: 255 LLELMIQIG-VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           L+E +  +    PD   Y +L+ G C    +  A        + G   +  ++  L+  +
Sbjct: 581 LVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640

Query: 314 CKNKEIEGALSLYSEMLSKG 333
             +    G + +  ++L KG
Sbjct: 641 FDSLGHMGPIHILDDILRKG 660



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 130/263 (49%), Gaps = 15/263 (5%)

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLINGLCRTGHT 138
           + F   A T+  +I+ L  E  +     +  +++  G  C  D+F    +ING  R G  
Sbjct: 68  NAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFI--CIINGYKRVGSA 125

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL +F  +    GEFG  CKP    Y+ + D L  E        L+  MK + + P+V
Sbjct: 126 EQALKMFYRI----GEFG--CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNV 179

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TY  L++  C  +  + A  LF+EM ++G  P+ VT+  +++ LCK GK+D+A  L   
Sbjct: 180 FTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGR 239

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
                 +P   VYN L+DG C  GR+  A +L   M  NG   +V SY  +IN  C +  
Sbjct: 240 F-----KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN 294

Query: 319 IEGALSLYSEMLSKGIRPTVVTY 341
           +E A +L+++M  +G    + T+
Sbjct: 295 VELAFALFAQMFLRGCDANIHTF 317



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 9/232 (3%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V ++  +   L KN  +D   SL +++   G  P+  T+N  I   C  GRV  
Sbjct: 413 HGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEW 472

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L R+      P+  T+  L+  L   ++  EA  LF ++ A   +P++ TY T++ 
Sbjct: 473 AMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLY 532

Query: 131 GLCRTGHTIVALNLF-EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           G  R G    AL LF + +  G         PD+ITY+T+    CK+G V  A +L  ++
Sbjct: 533 GFSRAGMMGEALQLFGKALVRGTA-------PDSITYNTMIHAYCKQGKVKIAAQLVERV 585

Query: 190 KD-ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
              +  +PD++TYTSLI G C   +  EA     + ++QG+ PN  T+N ++
Sbjct: 586 SSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 35/231 (15%)

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
           L  F  +AN N       +  A TY  + + L +E  +D  + +  +MK + IN     +
Sbjct: 58  LGFFSAIANSNA-----FQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLF 112

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
             +I G+       +A  +F  + + G +P V  +N +++ L    K    + L   M +
Sbjct: 113 ICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKK 172

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS---------------- 305
            G+ P+   YN L+   C   RV+ A +LFV M + GC  D  +                
Sbjct: 173 DGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDD 232

Query: 306 --------------YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                         Y  LI+G CK   IE A+ L  EM+  G+ P VV+Y+
Sbjct: 233 ARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYS 283



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%)

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           F  I+N   + G  ++A ++   + + G +P   +YN L+D      +      L+ +M+
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK 171

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +G + +VF+Y IL+   CKN  ++ A  L+ EM +KG  P  VTY T
Sbjct: 172 KDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTT 219


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 171/338 (50%), Gaps = 9/338 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKM 65
           +LR  P P  V ++N +             L + + +   G + P+ YTY  +I+ +CK+
Sbjct: 505 LLRQMPRPNAV-TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 563

Query: 66  GRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
           GRV     V   +L +    P+AV + +LI G C + ++  A     ++   G    V T
Sbjct: 564 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 623

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  L++ L   G    A  L EEM       G    PD  TY+ + +G CKEG V KA E
Sbjct: 624 YNLLVHALFMDGRGTEAYELVEEMG------GKGLAPDVFTYNILINGHCKEGNVKKALE 677

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +F  M    +   VVTYT+LI          E   LF E + +G++P++V +N ++N   
Sbjct: 678 IFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 737

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
            +G +D A  ++  M +  + PD   YNTLM G CL GRV+ A++L   M   G   D+ 
Sbjct: 738 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLV 797

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +Y  LI+GY    +++ AL + +EM++KG  PT++TYN
Sbjct: 798 TYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 835



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 144/271 (53%), Gaps = 8/271 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+L   L  +        L + +   GL PD++TYNILIN  CK G V     +  
Sbjct: 621 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 680

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + R       VT+T+LI  L  + ++ E   LF +    G +PD+  Y  LIN    +G
Sbjct: 681 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 740

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +   A  +  EM            PD +TY+T+  GLC  G VD+A++L  +M +  I P
Sbjct: 741 NIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP 794

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D+VTY +LI G+    D  +A  +  EMM++G  P ++T+N ++  LCKNG+ D+A  ++
Sbjct: 795 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 854

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           + M++ G+ PD S Y +L++G  LT    RA
Sbjct: 855 KEMVENGITPDDSTYISLIEG--LTTEDERA 883



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 178/395 (45%), Gaps = 76/395 (19%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSI----------------------GLFPDLY 53
           P    N+L    A  + + T L L+ R+ S+                       LF D++
Sbjct: 416 PSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAPAFALFADMF 475

Query: 54  ---------TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104
                    T+NI++   C  G+ +        +LR    P+AVT+ ++I G C+  R+ 
Sbjct: 476 RLRLPLCTTTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQ 531

Query: 105 EAAALFTKLRAFG-CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
            A  +  ++R  G   P+ +TY T+I+G C+ G    A+ +F+EM    GE     KP+A
Sbjct: 532 AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLT-KGE----VKPEA 586

Query: 164 ITYSTITDGLCKEGFVD-----------------------------------KAKELFLK 188
           + Y+ +  G C +G +D                                   +A EL  +
Sbjct: 587 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 646

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M  + + PDV TY  LI G C   +  +A  +F  M  +GV+  VVT+  ++  L K G+
Sbjct: 647 MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQ 706

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + E  +L +  ++ G+RPD  +YN L++    +G ++RA E+   ME      D  +Y  
Sbjct: 707 VQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNT 766

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L+ G C    ++ A  L  EM  +GI+P +VTYNT
Sbjct: 767 LMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNT 801



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 6/316 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ML      P    +N L G        DT L    R+   G+   + TYN+L++  
Sbjct: 572 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 631

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              GR +  + ++  +      PD  T+  LI G C E  + +A  +F  +   G +  V
Sbjct: 632 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 691

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LI  L + G       LF+E            +PD + Y+ + +     G +D+A
Sbjct: 692 VTYTALIYALSKKGQVQETDKLFDEAVRRG------IRPDLVLYNALINSHSTSGNIDRA 745

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+  +M+ + I PD VTY +L+RG C     +EA+ L  EM ++G+QP++VT+N +++ 
Sbjct: 746 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISG 805

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
               G + +A R+   M+  G  P    YN L+ G C  G+ + A+ +   M  NG   D
Sbjct: 806 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 865

Query: 303 VFSYGILINGYCKNKE 318
             +Y  LI G     E
Sbjct: 866 DSTYISLIEGLTTEDE 881


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 180/327 (55%), Gaps = 9/327 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVVLGR 77
           ++N L   L        V++LF+R     ++ PD++++N++I   C++G+V     ++ R
Sbjct: 217 AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVER 276

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTG 136
           +     +PD VT   L+ GLC  + +     +  +L+  G C P+V T+T++I+G C+ G
Sbjct: 277 MNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAG 336

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ ++ +M       G++  P+ +TY+ + +G  K G +  A E++ +M      P
Sbjct: 337 KLEDAMAVYNDMVAS----GIM--PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPP 390

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DVVT++SLI G+C     ++A  ++ +M    +QPNV TF++I++ LCK  + DEA  LL
Sbjct: 391 DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLL 450

Query: 257 -ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            EL ++  + P A +YN ++D  C  G+V+ A  +   ME  GC  D ++Y ILI GYC 
Sbjct: 451 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCM 510

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
              I  A+  + EM+  G  P  +T N
Sbjct: 511 KSRISEAIMFFHEMVEAGCSPDSITVN 537



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 161/311 (51%), Gaps = 8/311 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+  ++     P V SFN++   + +       L L +R+N  G  PD  T+NIL++  
Sbjct: 237 LFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGL 296

Query: 63  CKMGRVSPGFVVLGRILRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           C+   VS G  VL R+ R     P+ VTFTS+I G C   ++ +A A++  + A G  P+
Sbjct: 297 CRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPN 356

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TY  LING  + G    A+ ++++M        + C PD +T+S++ DG C+ G +D 
Sbjct: 357 TVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRCGQLDD 410

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIM 240
           A  ++  M    I P+V T++ +I   C  N  +EA  L  E+ +   + P    +N ++
Sbjct: 411 ALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVI 470

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK GK+DEA+ + + M + G RPD   Y  L+ G+C+  R++ A   F  M   GC 
Sbjct: 471 DVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCS 530

Query: 301 RDVFSYGILIN 311
            D  +    I+
Sbjct: 531 PDSITVNCFIS 541



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 170/343 (49%), Gaps = 18/343 (5%)

Query: 10  MHPSP----PPVCSFNILFGCLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCFCK 64
           +H SP    P   S   +   L ++      L LF ++ +  G  PD    + L++    
Sbjct: 133 LHCSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTC 192

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL---RAFGCKPD 121
              +     +L +        +A  +  L+  L    R+ +  ALF +    R +   PD
Sbjct: 193 ANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVY--SPD 250

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V+++  +I G+CR G    AL L E M     EFG  C PD +T++ + DGLC+   V +
Sbjct: 251 VWSFNVVIKGVCRVGQVQKALELVERM----NEFG--CSPDTVTHNILVDGLCRTNEVSR 304

Query: 182 AKELFLKMKDENI-NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
             E+  +++ + +  P+VVT+TS+I G+C A    +A  ++ +M+  G+ PN VT+NV++
Sbjct: 305 GHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLI 364

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N   K G +  A  + + M ++   PD   +++L+DG+C  G+++ A  ++  M  +   
Sbjct: 365 NGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQ 424

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEM-LSKGIRPTVVTYN 342
            +V+++ I+I+  CK    + A+ L +E+ L   I P    YN
Sbjct: 425 PNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYN 467



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 130/267 (48%), Gaps = 15/267 (5%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA-FGCKPDVFTYTTLINGLCRTGHTIVA 141
            TP A +   +I  LC   R  +A  LF ++   +G  PD    + L++       +   
Sbjct: 140 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVS-------SCTC 192

Query: 142 LNLFEEMA---NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK-MKDENINPD 197
            NL +  A   +   EFG  C+ +A  Y+ +   L   G V     LF + ++D   +PD
Sbjct: 193 ANLLDASATLLSKASEFG--CRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD 250

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V ++  +I+G C      +A  L   M + G  P+ VT N++++ LC+  ++     +L 
Sbjct: 251 VWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLR 310

Query: 258 LMIQIGV-RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
            + + GV  P+   + +++ G+C  G++  A  ++  M ++G M +  +Y +LINGY K 
Sbjct: 311 RLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKV 370

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++  A+ +Y +M      P VVT+++
Sbjct: 371 GDLGSAVEVYQQMTRLRCPPDVVTFSS 397


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 176/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 80  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 139

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 140 DIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 199

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+++T++T+ DG CK G VD A E++
Sbjct: 200 VLINGLCKESKIDDANELFDEMLVK----GLV--PNSVTFTTLIDGHCKNGRVDLAMEIY 253

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A  L  EM  +G++P+ +T+  +++  CK+
Sbjct: 254 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKD 313

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ   R D  VY  L+ G C  G    A+++   M S G   D  +Y
Sbjct: 314 GDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTY 373

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 374 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYN 409



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 181

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES+I +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 182 LKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHC 241

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A  L  +M  + 
Sbjct: 242 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKG 295

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ +  + + V +  +++ LC+ G   +A 
Sbjct: 296 LKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAE 355

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PDA  Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 356 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 100/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 136 CKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 195

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  K+D+A+ L + M+  G+ P++  + TL+DG C  GRV+ A E++  
Sbjct: 196 YTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQ 255

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 256 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTT 305



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVV------CKPDAITYSTI 169
           + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +
Sbjct: 2   LHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIFETKGTQRSDLYVFSGL 61

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E +   ++        T   ++        +      + E+++ G 
Sbjct: 62  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 121

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++    
Sbjct: 122 PASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 181

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  +I+ A  L+ EML KG+ P  VT+ T
Sbjct: 182 LKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTT 235


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 177/354 (50%), Gaps = 29/354 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S N L   LAK +  +   +L+K++ + G+ P L T+N LIN   K G+V    ++L +I
Sbjct: 207 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 266

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +   +PD  T+TSLI G C    +  A  +F ++   GC P+  TY+TLINGLC  G  
Sbjct: 267 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 326

Query: 139 IVALNLFEEMANGNGEFGVV-----------------------------CKPDAITYSTI 169
             AL++ EEM     E  V                              C+P+  TY+ +
Sbjct: 327 DEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTAL 386

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GL + G ++ A  L+ KM  E + P+ VTY +LI   C    ++ A  +F  M   G 
Sbjct: 387 ISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGS 446

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             N  T+N I+  LC  G +++A  L E M+++G  P    YNTL++G+   G VN A  
Sbjct: 447 LANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAAR 506

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L   M+ NGC  D ++Y  L++G+ K  ++E A   + EM+  G+ P  V+Y T
Sbjct: 507 LLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTT 560



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 164/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L++    +  + L+ ++   GL P+  TYN LIN  C  GR S    +
Sbjct: 378 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 437

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       +  T+  +IKGLC    I +A  LF K+   G  P V TY TLING   
Sbjct: 438 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 497

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L + M   NG     C+PD  TY+ +  G  K G ++ A   F +M +  +
Sbjct: 498 KGNVNNAARLLDLMKE-NG-----CEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 551

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NP+ V+YT+LI G       + A  L   M + G  PNV ++N ++N L K  +  EA +
Sbjct: 552 NPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEK 611

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M + G+ P+   Y TL+DG C  GR   A ++F  ME   C+ ++++Y  LI G C
Sbjct: 612 ICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC 671

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  + + A  L  EM  KG+ P  VT+ +
Sbjct: 672 QEGKADEAEILLKEMERKGLAPDEVTFTS 700



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 165/308 (53%), Gaps = 6/308 (1%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
           V      ++ +G    LY+ N L+    K   V     +  ++L S   P  +TF +LI 
Sbjct: 189 VADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLIN 248

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
            L  + ++ EA  + +++  +   PDVFTYT+LI G CR  +  +A  +F+ M       
Sbjct: 249 ILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEG--- 305

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
              C P+++TYST+ +GLC EG VD+A ++  +M ++ I P V TYT  I   C      
Sbjct: 306 ---CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 362

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA  L   M  +G +PNV T+  +++ L + GK++ A  L   M++ G+ P+   YN L+
Sbjct: 363 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 422

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +  C+ GR + A ++F  ME +G + +  +Y  +I G C   +IE A+ L+ +ML  G  
Sbjct: 423 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 482

Query: 336 PTVVTYNT 343
           PTVVTYNT
Sbjct: 483 PTVVTYNT 490



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 167/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L     + T L +F  +   G   +  TYN +I   C  G +    V+
Sbjct: 413 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 472

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L+    P  VT+ +LI G   +  +  AA L   ++  GC+PD +TY  L++G  +
Sbjct: 473 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 532

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A   F+EM     E G+   P+ ++Y+T+ DG  K+G VD A  L  +M++   
Sbjct: 533 WGKLESASFYFQEMV----ECGL--NPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGC 586

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NP+V +Y ++I G    N ++EA+ +  +M +QG+ PNV+T+  +++ LC+NG+   A +
Sbjct: 587 NPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFK 646

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M +    P+   Y++L+ G C  G+ + A+ L   ME  G   D  ++  LI+G+ 
Sbjct: 647 IFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFV 706

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               I+ A  L   M+  G +P   TY+
Sbjct: 707 VLGRIDHAFLLLRRMVDVGCKPNYRTYS 734



 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 162/313 (51%), Gaps = 7/313 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF +M   H S     ++N +   L      +  + LF+++  +G  P + TYN LIN +
Sbjct: 437 IFHWM-EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 495

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G V+    +L  +  +   PD  T+  L+ G     ++  A+  F ++   G  P+ 
Sbjct: 496 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 555

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +YTTLI+G  + G   +AL+L E M     E G  C P+  +Y+ + +GL KE    +A
Sbjct: 556 VSYTTLIDGHSKDGKVDIALSLLERME----EMG--CNPNVESYNAVINGLSKENRFSEA 609

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +++  KM ++ + P+V+TYT+LI G C       A  +F +M  +   PN+ T++ ++  
Sbjct: 610 EKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 669

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+ GK DEA  LL+ M + G+ PD   + +L+DGF + GR++ A  L   M   GC  +
Sbjct: 670 LCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPN 729

Query: 303 VFSYGILINGYCK 315
             +Y +L+ G  K
Sbjct: 730 YRTYSVLLKGLQK 742



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 157/351 (44%), Gaps = 30/351 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N +   L+K   +     +  ++   GL P++ TY  LI+  C+ GR    F +
Sbjct: 588 PNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 647

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+  T++SLI GLC E +  EA  L  ++   G  PD  T+T+LI+G   
Sbjct: 648 FHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVV 707

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK----------- 183
            G    A  L   M +      V CKP+  TYS +  GL KE  + + K           
Sbjct: 708 LGRIDHAFLLLRRMVD------VGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSF 761

Query: 184 -------------ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
                         L  +M +    P + TY++L+ G C    + EA+ L  +M ++G  
Sbjct: 762 SPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFC 821

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+   +  ++   CKN ++D A ++   +   G +   S+Y  L+   C  G+V  A+ L
Sbjct: 822 PDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQAL 881

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           F +M       D   + +L++G  K  E++  + L   M SK   P + TY
Sbjct: 882 FDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTY 932



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 156/322 (48%), Gaps = 24/322 (7%)

Query: 29  KNKHYDTVLSLFKRLNSIGLF------PDLYTYNILINCFCKMGRVSPGFVVLGRILRS- 81
           K  H   ++++ K   S+  F         Y +N+  NCF  M         L R++R  
Sbjct: 116 KAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHNM--NCFISM---------LNRLVRDR 164

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
            F P       +IK    E  I   A    ++   G    +++  TL+  L +      A
Sbjct: 165 VFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGA 224

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
            NL+++M N         +P  +T++T+ + L K+G V +A+ +  ++   +++PDV TY
Sbjct: 225 RNLYKQMLNSG------IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTY 278

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           TSLI G C   + + A  +F  M+ +G  PN VT++ ++N LC  G++DEA  +LE MI+
Sbjct: 279 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 338

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G+ P    Y   +   C       A EL   M+  GC  +V +Y  LI+G  +  ++E 
Sbjct: 339 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 398

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A+ LY +ML +G+ P  VTYN 
Sbjct: 399 AIGLYHKMLKEGLVPNTVTYNA 420



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 145/313 (46%), Gaps = 18/313 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L +N        +F  +      P+LYTY+ LI   C+ G+     ++
Sbjct: 623 PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEIL 682

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL-- 132
           L  + R    PD VTFTSLI G     RI  A  L  ++   GCKP+  TY+ L+ GL  
Sbjct: 683 LKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQK 742

Query: 133 -CRTGHTIVALNL--------------FEEMANGNGEFGVV-CKPDAITYSTITDGLCKE 176
            C      VA+                FE ++N       + C+P   TYST+  GLC++
Sbjct: 743 ECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRK 802

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G   +A++L   MK+    PD   Y SL+   C   + + A  +F  +  +G Q ++  +
Sbjct: 803 GRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIY 862

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             ++  LCK G+++EA  L + M++     D  V+  L+DG    G ++   +L   MES
Sbjct: 863 RALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMES 922

Query: 297 NGCMRDVFSYGIL 309
                ++ +Y IL
Sbjct: 923 KNFTPNIQTYVIL 935



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 122/299 (40%), Gaps = 63/299 (21%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ L   L +    D    L K +   GL PD  T+  LI+ F  +GR+   F++
Sbjct: 658 PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLL 717

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIME------------------------AAALF 110
           L R++     P+  T++ L+KGL  E  ++E                         + L 
Sbjct: 718 LRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLL 777

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++   GC+P + TY+TL++GLCR G    A  L ++M     E G  C    I YS + 
Sbjct: 778 ARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMK----ERGF-CPDREIYYSLLI 832

Query: 171 D----------------------------------GLCKEGFVDKAKELFLKMKDENINP 196
                                               LCK G V++A+ LF  M ++  N 
Sbjct: 833 AHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNA 892

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           D + +T L+ G     + +    L   M  +   PN+ T+ ++  EL + GK  E+  L
Sbjct: 893 DEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPL 951



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 51/120 (42%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           KN   D  L +F  + + G    L  Y  LI   CK G+V     +   +L   +  D +
Sbjct: 836 KNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEI 895

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
            +T L+ GL  E  +     L   + +    P++ TY  L   L R G +I +  L +++
Sbjct: 896 VWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKL 955


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 171/336 (50%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++     G    LY +NIL + FCK G
Sbjct: 97  LTREHKFWLPFDTCRKVLEHLMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G  PDV+TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 217 VLINGLCKESKMDXANELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D N+A  L  EM  +G++P+ +T+  +++  CK 
Sbjct: 271 KQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 331 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN  CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYN 426



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFK 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++  A  LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G +++A +L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           +++  M+ +G++PD   Y  +++  C  G V +  +L   M+ +G    V +Y +L+NG
Sbjct: 373 KMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 99/178 (55%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +    CKEG +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M 
Sbjct: 145 FNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMH 204

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GV P+V T++V++N LCK  KMD A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 205 ASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S   + D+ +Y  LI G CK  ++  A  L  EM  KG++P  +TY T
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTT 322



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 90/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   ++        T   ++        +     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAVECYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++ +  CK G +  A  + + + + G+RP    YNTLM+G+ 
Sbjct: 129 FYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++   +L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  V
Sbjct: 189 RLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGV 248

Query: 340 TYNT 343
           T+ T
Sbjct: 249 TFTT 252


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 177/338 (52%), Gaps = 9/338 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+ +   P P+ ++N L     +    +    +   + + G+  +L  +N L+N  CK G
Sbjct: 302 MIDVGLKPEPI-TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAG 360

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++     ++  ++     PD+ T++ LI+G C    +  A  L  +++     P V TY+
Sbjct: 361 KMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYS 420

Query: 127 TLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            +INGLCR G+      +  EM  NG        KP+A+ Y+T+     KEG V++++ +
Sbjct: 421 VIINGLCRCGNLQGTNAILREMVMNG-------LKPNAVVYTTLMTAHAKEGRVEESRMI 473

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             +M+++ I PDV  Y SLI GFC A    EA+   +EM+++ ++PN  T+   ++   K
Sbjct: 474 LERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 533

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G+M+ A R    M+  GV P+  +Y  L++G C  G V  A  +F  + S   ++DV +
Sbjct: 534 AGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQT 593

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y +LI+G  +N ++  A  ++SE+  KG+ P   TYN+
Sbjct: 594 YSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNS 631



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 171/346 (49%), Gaps = 27/346 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S N L G L K    +    +F  + +  + PD+YTY  +I+  CK+G V     V
Sbjct: 187 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 246

Query: 75  L------GRILRSC-----------FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           L       R+L                PD  T+  LI G C E R  EA  +  ++   G
Sbjct: 247 LLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVG 306

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA--ITYSTITDGLCK 175
            KP+  TY  LI+G  R G    A  + +EM        V C  +A  I ++T+ +G+CK
Sbjct: 307 LKPEPITYNALIDGFMRQGDIEQAFRIKDEM--------VACGIEANLIIWNTLLNGVCK 358

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
            G ++KA E+  +M ++ + PD  TY+ LI G C   +   A  L  EM  + + P V+T
Sbjct: 359 AGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT 418

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           ++VI+N LC+ G +   + +L  M+  G++P+A VY TLM      GRV  ++ +   M 
Sbjct: 419 YSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMR 478

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             G + DVF Y  LI G+CK K +E A +   EML + +RP   TY
Sbjct: 479 EQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTY 524



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 170/342 (49%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D M +     P V +++++   L +  +     ++ + +   GL P+   Y  L+ 
Sbjct: 401 FELLDEM-KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMT 459

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K GRV    ++L R+      PD   + SLI G C   R+ EA     ++     +P
Sbjct: 460 AHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRP 519

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  TY   I+G  + G   +A   F EM +     GV+  P+   Y+ + +G CKEG V 
Sbjct: 520 NAHTYGAFIDGYSKAGEMEIADRYFNEMLS----CGVL--PNVGIYTALIEGHCKEGNVT 573

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  +F  +    +  DV TY+ LI G       +EA  +F E+ ++G+ PN  T+N ++
Sbjct: 574 EAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLI 633

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G +D+AS+LLE M   G+ PD   YN L+DG C  G + RAK LF  +E  G  
Sbjct: 634 SGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLT 693

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  +Y  +++GYCK+K    A  L  EML +G+ P    YN
Sbjct: 694 PNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN 735



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 171/361 (47%), Gaps = 40/361 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++       +K    +     F  + S G+ P++  Y  LI   CK G V+  F V
Sbjct: 519 PNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSV 578

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              IL      D  T++ LI GL    ++ EA  +F++L+  G  P+ FTY +LI+G C+
Sbjct: 579 FRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCK 638

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L EEM            PD +TY+ + DGLCK G +++AK LF  ++   +
Sbjct: 639 QGNVDKASQLLEEMCIKG------INPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 692

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN------------- 241
            P+ VTY +++ G+C + +   A  L  EM+ +GV P+   +NVI+N             
Sbjct: 693 TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALD 752

Query: 242 ---------------------ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
                                  CK+GK+ EA+ LLE MI+    P+   Y +L+D  C 
Sbjct: 753 LFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCK 812

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G +  AK L++ M+    M    +Y  L++GY     +    +L+ EM++KGI P  +T
Sbjct: 813 AGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMT 872

Query: 341 Y 341
           Y
Sbjct: 873 Y 873



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 164/334 (49%), Gaps = 8/334 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F ++L        V ++++L   L++N        +F  L   GL P+ +TYN LI+
Sbjct: 576 FSVFRFILSRR-VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLIS 634

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G V     +L  +      PD VT+  LI GLC    I  A  LF  +   G  P
Sbjct: 635 GSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 694

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  TY  +++G C++ +   A  L EEM       GV   PDA  Y+ I +  CKE   +
Sbjct: 695 NCVTYAAMVDGYCKSKNPTAAFQLLEEML----LRGV--PPDAFIYNVILNFCCKEEKFE 748

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA +LF +M ++      V++ +LI G+C +    EA  L  EM+++   PN VT+  ++
Sbjct: 749 KALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI 807

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G M EA RL   M +  V P A  Y +L+ G+   G ++    LF  M + G  
Sbjct: 808 DHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIE 867

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            D  +Y ++I+ YC+   +  A  L  E+L KG+
Sbjct: 868 PDKMTYYVMIDAYCREGNVMEACKLKDEILVKGM 901



 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 167/334 (50%), Gaps = 7/334 (2%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           M+   P    +  L    AK    +    + +R+   G+ PD++ YN LI  FCK  R+ 
Sbjct: 444 MNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRME 503

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
                L  +L     P+A T+ + I G      +  A   F ++ + G  P+V  YT LI
Sbjct: 504 EARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 563

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G C+ G+   A ++F  +             D  TYS +  GL + G + +A  +F ++
Sbjct: 564 EGHCKEGNVTEAFSVFRFI------LSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSEL 617

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           +++ + P+  TY SLI G C   + ++A  L  EM  +G+ P++VT+N++++ LCK G++
Sbjct: 618 QEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEI 677

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           + A  L + +   G+ P+   Y  ++DG+C +     A +L   M   G   D F Y ++
Sbjct: 678 ERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVI 737

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +N  CK ++ E AL L+ EML KG   T V++NT
Sbjct: 738 LNFCCKEEKFEKALDLFQEMLEKGFAST-VSFNT 770



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 156/307 (50%), Gaps = 15/307 (4%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P+   +++L++ + KMG +     V        F P  ++  SL+  L   +++     +
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG-------------EFG 156
           F  + A    PDV+TYT +I+  C+ G+   A  +  EM                  + G
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKG 271

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
           +V  PD  TY  + +G C E    +AK + L+M D  + P+ +TY +LI GF    D  +
Sbjct: 272 LV--PDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQ 329

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  +  EM+  G++ N++ +N ++N +CK GKM++A  +++ M++ GV PD+  Y+ L++
Sbjct: 330 AFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIE 389

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C    + RA EL   M+       V +Y ++ING C+   ++G  ++  EM+  G++P
Sbjct: 390 GHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKP 449

Query: 337 TVVTYNT 343
             V Y T
Sbjct: 450 NAVVYTT 456



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 140/304 (46%), Gaps = 48/304 (15%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NIL   L K    +   +LF  +   GL P+  TY  +++ +CK    +  F +
Sbjct: 659 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 718

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PDA  +  ++   C E +  +A  LF ++   G    V ++ TLI G C+
Sbjct: 719 LEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCK 777

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A +L EEM            P+ +TY+++ D  CK G + +AK L+L+M++ N+
Sbjct: 778 SGKLQEANHLLEEMIEKQ------FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNV 831

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK------ 248
            P   TYTSL+ G+    + +E   LF EM+ +G++P+ +T+ V+++  C+ G       
Sbjct: 832 MPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACK 891

Query: 249 -----------------------------------MDEASRLLELMIQIGVRPDASVYNT 273
                                              MDEA+ +L  M++ G   + +    
Sbjct: 892 LKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGD 951

Query: 274 LMDG 277
           L+DG
Sbjct: 952 LVDG 955


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +   L K         L   + S GL P+  TYNIL+  +CKMG +     V
Sbjct: 241 PDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANV 300

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + ++   PD  T+  LI GLC E RI EA  L  ++      PDV +Y TLING   
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L EEM+    E GV  KP+A+T++ +    CKEG +D A     KM++   
Sbjct: 361 WSKISEAFKLLEEMS----EKGV--KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF 414

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD VTY +LI G+C A +  EA     EM  + ++ + VT N I+  LC+  K++EA +
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK 474

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL    + G   D   Y TL+ G+   G V+RA +L+  M+    +    +Y  +I G C
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLC 534

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  + E A+S  +E+L  G+ P   TYNT
Sbjct: 535 QCGKTEQAISKLNELLESGLLPDETTYNT 563



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 171/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L      +    L   + ++ L PD+ +YN LIN   +  ++S  F +
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+AVT   ++K  C E ++ +A+   TK+   G  PD  TY TLING C+
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A    +EM   N       K D++T +TI   LC+E  +++A +L    +    
Sbjct: 431 AGNMGEAFRTMDEMGRKN------MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGY 484

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V+Y +LI G+    + + A  L+ EM ++ + P+ VT+N I+  LC+ GK ++A  
Sbjct: 485 FIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAIS 544

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  +++ G+ PD + YNT++ G+C  G V +A +    M  N    DVF+  IL+ G C
Sbjct: 545 KLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLC 604

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               +E AL L++  +SKG     VTYNT
Sbjct: 605 MEGMLEKALKLFNTWVSKGKAIDTVTYNT 633



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 182/380 (47%), Gaps = 45/380 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTV---LSLFKRLNSIGLFPDLYTYNI 57
           F IF  M R+   P  + + N L   L +     +V      F     +G+ P++ T+NI
Sbjct: 155 FQIFKKMKRLRLRPN-LLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNI 213

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           +I  +C   +       L  + +   +PD VT+ +++  LC + R+ +A  L   +++ G
Sbjct: 214 VIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRG 273

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
             P+  TY  L+ G C+ G    A N+ E M   N        PD  TY+ + +GLC EG
Sbjct: 274 LLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNN------LLPDVWTYNMLINGLCNEG 327

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            +++A +L  +M++  + PDVV+Y +LI G    +  +EA  L  EM ++GV+PN VT N
Sbjct: 328 RIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHN 387

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG--------------- 282
           +++   CK GKMD+AS  +  M + G  PD   YNTL++G+C  G               
Sbjct: 388 IMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRK 447

Query: 283 --------------------RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
                               ++  A +L  S    G   D  SYG LI GY K+  ++ A
Sbjct: 448 NMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRA 507

Query: 323 LSLYSEMLSKGIRPTVVTYN 342
           L L+ EM  K I P+ VTYN
Sbjct: 508 LKLWDEMKEKEIIPSTVTYN 527



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 154/325 (47%), Gaps = 6/325 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   + NI+     K    D   +   ++   G  PD  TYN LIN +CK G +   F  
Sbjct: 381 PNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRT 440

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + R     D+VT  ++++ LC E ++ EA  L +  R  G   D  +Y TLI G  +
Sbjct: 441 MDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFK 500

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL L++EM     E  ++  P  +TY+ I  GLC+ G  ++A     ++ +  +
Sbjct: 501 DGNVDRALKLWDEMK----EKEII--PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGL 554

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY +++ G+C   D  +A     +M++   +P+V T N+++  LC  G +++A +
Sbjct: 555 LPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALK 614

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L    +  G   D   YNTL+   C  GR++ A  L   ME      D ++Y  +I    
Sbjct: 615 LFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALT 674

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
            +  I  A    S+ML KG  P  V
Sbjct: 675 DSGRIREAEEFMSKMLEKGXLPXQV 699



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 160/327 (48%), Gaps = 16/327 (4%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           ++L G +A ++ +D  LS+  RL S    P     +  I  + + G+    F +  ++ R
Sbjct: 109 SLLLGFIATDRRHDLHLSIL-RLTS----PSKALLDTAIGAYVQSGQPHHAFQIFKKMKR 163

Query: 81  SCFTPDAVTFTSLIKGLC---AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
               P+ +T  +L+  L    +   +  +   F      G  P+V T+  +I G C    
Sbjct: 164 LRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENK 223

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A+     M   N      C PD +TY+TI D LCK+G +  A++L + MK   + P+
Sbjct: 224 FKDAVEFLNVMGKYN------CSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPN 277

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLL 256
             TY  L+ G+C    W +     IE+M Q  + P+V T+N+++N LC  G+++EA +L 
Sbjct: 278 RNTYNILVYGYCKMG-WLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLR 336

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M  + + PD   YNTL++G     +++ A +L   M   G   +  ++ I++  YCK 
Sbjct: 337 DEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKE 396

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +++ A +  ++M   G  P  VTYNT
Sbjct: 397 GKMDDASNTITKMEESGFSPDCVTYNT 423



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 121/283 (42%), Gaps = 29/283 (10%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L     K+ + D  L L+  +    + P   TYN +I   C+ G+       L  +
Sbjct: 490 SYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L S   PD  T+ +++ G C E  + +A     K+     KPDVFT   L+ GLC  G  
Sbjct: 550 LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGML 609

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL LF    +           D +TY+T+   LCKEG +D A  L  +M+++ + PD 
Sbjct: 610 EKALKLFNTWVSKGKAI------DTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDH 663

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN-----------------------VVT 235
            TY ++I     +    EA+    +M+++G  P                         V 
Sbjct: 664 YTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVA 723

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
           ++  + ELC  GK  +A R+     Q G+  D S Y  LMDG 
Sbjct: 724 YSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGL 766



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 23/144 (15%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N L   L K    D   +L   +    L PD YTYN +I      GR+      + ++
Sbjct: 630 TYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKM 689

Query: 79  LRSCFTPDAV-----------------------TFTSLIKGLCAESRIMEAAALFTKLRA 115
           L     P  V                        ++  IK LC E +  +A  +F + + 
Sbjct: 690 LEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQ 749

Query: 116 FGCKPDVFTYTTLINGLCRTGHTI 139
            G   D  TY  L++GL +   +I
Sbjct: 750 KGITVDKSTYINLMDGLIKRRKSI 773


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 165/306 (53%), Gaps = 6/306 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L+L++ + + G+ P + ++N ++  FCK G++S     L  +L+    PD +++ +LI G
Sbjct: 327 LALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYG 386

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
            C    I EA  L  +LR      ++ TY TLI+GLCR G    AL L E+M N      
Sbjct: 387 FCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRG---- 442

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
               PD +TY+ + +G CK G +  AKE F +M    + PD   YT+ I G     D  +
Sbjct: 443 --IHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAK 500

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  L  EM+ +G  P+V+T+NV +N LCK G ++EA  LL+ MI+ G  PD   Y + M 
Sbjct: 501 AFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMH 560

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
                G +   +E+F  M S G    V +Y +LI+ +  N  ++ A++ + EM  KG+ P
Sbjct: 561 AHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVP 620

Query: 337 TVVTYN 342
            V+TYN
Sbjct: 621 NVITYN 626



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 178/357 (49%), Gaps = 31/357 (8%)

Query: 15  PPVCSFN-ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V S N I++G   + K  D    L   L    L PD+ +YN LI  FC++G +   F+
Sbjct: 340 PTVASHNTIMYGFCKEGKMSDARQQLSDMLKK-NLMPDIISYNTLIYGFCRLGNIGEAFI 398

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +     + + VT+ +LI GLC    +  A  L   +   G  PDV TYT L+NG C
Sbjct: 399 LLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGAC 458

Query: 134 RTGHTIVALNLFEEMAN---------------GNGEFGVVCK--------------PDAI 164
           + G+ ++A   F+EM +               G  + G   K              PD I
Sbjct: 459 KLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVI 518

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY+   +GLCK G +++A EL  KM  +   PD VTYTS +          E + +F +M
Sbjct: 519 TYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDM 578

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + +G  P VVT+ V+++    NG++D A      M + GV P+   YN L++GFC   ++
Sbjct: 579 LSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKM 638

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           ++A + F+ M+  G   + ++Y ILIN  C   + + AL LY++ML K IRP   T+
Sbjct: 639 DQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTH 695



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 174/341 (51%), Gaps = 9/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M+R +   P V + N +   L         L +++ +   G+ P + TYN +++ F
Sbjct: 189 VFEKMMR-NRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSF 247

Query: 63  CKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           CK G V     ++ ++  R C+ P  VTF  LI GL  +  + +A  L  ++   G +  
Sbjct: 248 CKGGEVQRALDLVPKMQERGCY-PSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVS 306

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            +TY  LI G C+ G  + AL L+EEM            P   +++TI  G CKEG +  
Sbjct: 307 PYTYNPLICGYCKKGLLVEALALWEEMVTRG------VSPTVASHNTIMYGFCKEGKMSD 360

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A++    M  +N+ PD+++Y +LI GFC   +  EA  L  E+  + +  N+VT+N +++
Sbjct: 361 ARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLID 420

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LC+ G ++ A +L E MI  G+ PD   Y  L++G C  G +  AKE F  M   G   
Sbjct: 421 GLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAP 480

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           D F+Y   I G  K  +   A  L  EML+KG  P V+TYN
Sbjct: 481 DQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYN 521



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 145/270 (53%), Gaps = 6/270 (2%)

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
            +V  +++R+ F PD      ++K L  ++ +++A  ++  +  +G +P V TY T+++ 
Sbjct: 187 LLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHS 246

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+ G    AL+L  +M     E G  C P  +T++ + +GL K+G + +AK L  +M  
Sbjct: 247 FCKGGEVQRALDLVPKMQ----ERG--CYPSEVTFNVLINGLSKKGELQQAKGLIQEMAK 300

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             +     TY  LI G+C      EA  L+ EM+ +GV P V + N IM   CK GKM +
Sbjct: 301 AGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSD 360

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A + L  M++  + PD   YNTL+ GFC  G +  A  L   +       ++ +Y  LI+
Sbjct: 361 ARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLID 420

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G C+  ++E AL L  +M+++GI P VVTY
Sbjct: 421 GLCRLGDLETALKLKEDMINRGIHPDVVTY 450



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 113/224 (50%), Gaps = 6/224 (2%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PDV     ++  L      + AL ++  M    GE+G+  +P   TY+T+    CK G V
Sbjct: 200 PDVKNCNRILKILRDKNLLVKALEVYRMM----GEYGI--RPTVTTYNTMLHSFCKGGEV 253

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            +A +L  KM++    P  VT+  LI G     +  +AK L  EM   G++ +  T+N +
Sbjct: 254 QRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPL 313

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   CK G + EA  L E M+  GV P  + +NT+M GFC  G+++ A++    M     
Sbjct: 314 ICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNL 373

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M D+ SY  LI G+C+   I  A  L  E+  + +   +VTYNT
Sbjct: 374 MPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNT 417



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 8/210 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++N+    L K  + +    L +++   G  PD  TY   ++   + G +  G  
Sbjct: 514 PPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGRE 573

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L    TP  VT+T LI       R+  A A F +++  G  P+V TY  LING C
Sbjct: 574 IFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFC 633

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A   F EM     E G+   P+  TY+ + +  C  G   +A  L+ +M  + 
Sbjct: 634 KVRKMDQACKFFIEMQ----EKGIF--PNKYTYTILINENCNMGKWQEALRLYAQMLGKR 687

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           I PD  T+ +L++      D+      FIE
Sbjct: 688 IRPDSCTHGALLKKL--DKDYKVQAVQFIE 715


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 165/325 (50%), Gaps = 4/325 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S++     L K       + +F+ +   G  PD +TYNILIN  CK  ++  G  ++ 
Sbjct: 91  VISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMD 150

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +    F+P  VT+T+LI G C   R+  A  +  ++   G  P+  TYT LI GLC  G
Sbjct: 151 EMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCG 210

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ + +EM     E    C P+ +TY+ +  GLC++G  +   E   +M      P
Sbjct: 211 EVERAILVLKEMKLRGNE----CCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFP 266

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +  TYT+LI G C    + EA  L  EM+  G + +VV +N +++ LCK G++D A  + 
Sbjct: 267 NNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQ 326

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
            LM++ GV PD   Y +L+ G C  G ++ A  L   M + G + +  +Y  LING+ + 
Sbjct: 327 ILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQA 386

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
              + AL L +EM S G+ P    Y
Sbjct: 387 DRTDHALQLVNEMKSNGLMPAGDIY 411



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/295 (34%), Positives = 159/295 (53%), Gaps = 8/295 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D+ +Y+  IN  CK G+++    +   +      PD+ T+  LI GLC ++++    +L 
Sbjct: 90  DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            +++A G  P V TYTTLI+G C  G    A+++ +EM +     G+   P+ +TY+ + 
Sbjct: 150 DEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEH----RGIT--PNTVTYTALI 203

Query: 171 DGLCKEGFVDKAKELF--LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
            GLC  G V++A  +   +K++     P+VVTYT LI G C    +        EM+  G
Sbjct: 204 QGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISG 263

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
             PN  T+  +++ LC+ G   EA+ LL  M+ IG   D  +YN+L+DG C  G ++ A+
Sbjct: 264 CFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAR 323

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           E+ + M   G   DVF+Y  LI G C    ++ AL L  EM +KGI P  VTY T
Sbjct: 324 EMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTT 378



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 155/299 (51%), Gaps = 8/299 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P   ++NIL   L K+   +  +SL   + + G  P + TY  LI+ FC  GRV    
Sbjct: 122 SAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAM 181

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT--KLRAFGCKPDVFTYTTLIN 130
            +L  +     TP+ VT+T+LI+GLC    +  A  +    KLR   C P+V TYT LI+
Sbjct: 182 DILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIH 241

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLC+ G   + +   +EM          C P+  TY+ +  GLC++G   +A  L  +M 
Sbjct: 242 GLCQKGLFEMGMEFLDEMIISG------CFPNNATYTALIHGLCQKGSFLEAAVLLNEMV 295

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
                 DVV Y SLI G C   + + A+ + I M+++GV P+V T+  ++  LC  G +D
Sbjct: 296 AIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLD 355

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           EA  L++ M   G+ P++  Y TL++GF    R + A +L   M+SNG M     Y IL
Sbjct: 356 EALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKIL 414



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 105/195 (53%), Gaps = 8/195 (4%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGR-ILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108
           P++ TY  LI+  C+ G    G   L   I+  CF P+  T+T+LI GLC +   +EAA 
Sbjct: 231 PNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCF-PNNATYTALIHGLCQKGSFLEAAV 289

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           L  ++ A GC+ DV  Y +LI+GLC+ G     L+   EM     E GV   PD  TY++
Sbjct: 290 LLNEMVAIGCELDVVIYNSLIDGLCKMGE----LDFAREMQILMVEKGVA--PDVFTYTS 343

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +  GLC  G +D+A  L  +M+ + I P+ VTYT+LI GF  A+  + A  L  EM   G
Sbjct: 344 LIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNG 403

Query: 229 VQPNVVTFNVIMNEL 243
           + P    + ++   L
Sbjct: 404 LMPAGDIYKILFKSL 418



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 6/194 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L +   ++  +     +   G FP+  TY  LI+  C+ G      V+
Sbjct: 231 PNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVL 290

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++      D V + SLI GLC    +  A  +   +   G  PDVFTYT+LI GLC 
Sbjct: 291 LNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCD 350

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL L +EM       G+V  P+++TY+T+ +G  +    D A +L  +MK   +
Sbjct: 351 AGLLDEALGLMQEMRAK----GIV--PNSVTYTTLINGFTQADRTDHALQLVNEMKSNGL 404

Query: 195 NPDVVTYTSLIRGF 208
            P    Y  L +  
Sbjct: 405 MPAGDIYKILFKSL 418


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 175/334 (52%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +L+ G      + E   L T + A G +PDV+TY+
Sbjct: 151 DIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM +     G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A+ L  EM  +G++P+ +T+  +++  CK 
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A    + MIQ  ++ D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 325 GDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK  ++     L  EM   G  P+VVT
Sbjct: 385 TMIINEFCKKGDVWTGSKLLKEMQRDGQMPSVVT 418



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +    CK+G +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMH 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G C+  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTT 316



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 110/232 (47%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTITD 171
           +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +  
Sbjct: 15  SYCTMIHLLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 74

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   ++        T   ++        +      + E+++ G   
Sbjct: 75  AYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPA 134

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M++ CK+G +  A  +   + + G+RP    +NTLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 194

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 195 TAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTT 246


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +   L K         L   + S GL P+  TYNIL+  +CKMG +     V
Sbjct: 241 PDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANV 300

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + ++   PD  T+  LI GLC E RI EA  L  ++      PDV +Y TLING   
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L EEM+    E GV  KP+A+T++ +    CKEG +D A     KM++   
Sbjct: 361 WSKISEAFKLLEEMS----EKGV--KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF 414

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD VTY +LI G+C A +  EA     EM  + ++ + VT N I+  LC+  K++EA +
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK 474

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL    + G   D   Y TL+ G+   G V+RA +L+  M+    +    +Y  +I G C
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLC 534

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  + E A+S  +E+L  G+ P   TYNT
Sbjct: 535 QCGKTEQAISKLNELLESGLLPDETTYNT 563



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 171/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L      +    L   + ++ L PD+ +YN LIN   +  ++S  F +
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+AVT   ++K  C E ++ +A+   TK+   G  PD  TY TLING C+
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A    +EM   N       K D++T +TI   LC+E  +++A +L    +    
Sbjct: 431 AGNMGEAFRTMDEMGRKN------MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGY 484

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V+Y +LI G+    + + A  L+ EM ++ + P+ VT+N I+  LC+ GK ++A  
Sbjct: 485 FIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAIS 544

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  +++ G+ PD + YNT++ G+C  G V +A +    M  N    DVF+  IL+ G C
Sbjct: 545 KLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLC 604

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               +E AL L++  +SKG     VTYNT
Sbjct: 605 MEGVLEKALKLFNTWVSKGKAIDTVTYNT 633



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 182/380 (47%), Gaps = 45/380 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTV---LSLFKRLNSIGLFPDLYTYNI 57
           F IF  M R+   P  + + N L   L +     +V      F     +G+ P++ T+NI
Sbjct: 155 FQIFKKMKRLRLRPN-LLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNI 213

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           +I  +C   +       L  + +   +PD VT+ +++  LC + R+ +A  L   +++ G
Sbjct: 214 VIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRG 273

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
             P+  TY  L+ G C+ G    A N+ E M   N        PD  TY+ + +GLC EG
Sbjct: 274 LLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNN------LLPDVWTYNMLINGLCNEG 327

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            +++A +L  +M++  + PDVV+Y +LI G    +  +EA  L  EM ++GV+PN VT N
Sbjct: 328 RIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHN 387

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG--------------- 282
           +++   CK GKMD+AS  +  M + G  PD   YNTL++G+C  G               
Sbjct: 388 IMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRK 447

Query: 283 --------------------RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
                               ++  A +L  S    G   D  SYG LI GY K+  ++ A
Sbjct: 448 NMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRA 507

Query: 323 LSLYSEMLSKGIRPTVVTYN 342
           L L+ EM  K I P+ VTYN
Sbjct: 508 LKLWDEMKEKEIIPSTVTYN 527



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 154/325 (47%), Gaps = 6/325 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   + NI+     K    D   +   ++   G  PD  TYN LIN +CK G +   F  
Sbjct: 381 PNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRT 440

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + R     D+VT  ++++ LC E ++ EA  L +  R  G   D  +Y TLI G  +
Sbjct: 441 MDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFK 500

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL L++EM     E  ++  P  +TY+ I  GLC+ G  ++A     ++ +  +
Sbjct: 501 DGNVDRALKLWDEMK----EKEII--PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGL 554

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY +++ G+C   D  +A     +M++   +P+V T N+++  LC  G +++A +
Sbjct: 555 LPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALK 614

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L    +  G   D   YNTL+   C  GR++ A  L   ME      D ++Y  +I    
Sbjct: 615 LFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALT 674

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
            +  I  A    S+ML KG  P  V
Sbjct: 675 DSGRIREAEEFMSKMLEKGNLPDQV 699



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 160/327 (48%), Gaps = 16/327 (4%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           ++L G +A ++ +D  LS+  RL S    P     +  I  + + G+    F +  ++ R
Sbjct: 109 SLLLGFIATDRRHDLHLSIL-RLTS----PSKALLDTAIGAYVQSGQPHHAFQIFKKMKR 163

Query: 81  SCFTPDAVTFTSLIKGLC---AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
               P+ +T  +L+  L    +   +  +   F      G  P+V T+  +I G C    
Sbjct: 164 LRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENK 223

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A+     M   N      C PD +TY+TI D LCK+G +  A++L + MK   + P+
Sbjct: 224 FKDAVEFLNVMGKYN------CSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPN 277

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLL 256
             TY  L+ G+C    W +     IE+M Q  + P+V T+N+++N LC  G+++EA +L 
Sbjct: 278 RNTYNILVYGYCKMG-WLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLR 336

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M  + + PD   YNTL++G     +++ A +L   M   G   +  ++ I++  YCK 
Sbjct: 337 DEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKE 396

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +++ A +  ++M   G  P  VTYNT
Sbjct: 397 GKMDDASNTITKMEESGFSPDCVTYNT 423



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 29/283 (10%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L     K+ + D  L L+  +    + P   TYN +I   C+ G+       L  +
Sbjct: 490 SYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L S   PD  T+ +++ G C E  + +A     K+     KPDVFT   L+ GLC  G  
Sbjct: 550 LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVL 609

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL LF    +           D +TY+T+   LCKEG +D A  L  +M+++ + PD 
Sbjct: 610 EKALKLFNTWVSKGKAI------DTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDH 663

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN-----------------------VVT 235
            TY ++I     +    EA+    +M+++G  P+                        V 
Sbjct: 664 YTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVA 723

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
           ++  + ELC  GK  +A R+     Q G+  D S Y  LMDG 
Sbjct: 724 YSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGL 766



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 110/257 (42%), Gaps = 29/257 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N + G L +    +  +S    L   GL PD  TYN +++ +C+ G V   F  
Sbjct: 521 PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQF 580

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ + F PD  T   L++GLC E  + +A  LF    + G   D  TY TLI  LC+
Sbjct: 581 HNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCK 640

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A NL  EM     E G    PD  TY+ I   L   G + +A+E   KM ++  
Sbjct: 641 EGRLDDAFNLLSEMEEK--ELG----PDHYTYNAIITALTDSGRIREAEEFMSKMLEKGN 694

Query: 195 NPD-----------------------VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
            PD                        V Y+  I+  C    + +A  +F E   +G+  
Sbjct: 695 LPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITV 754

Query: 232 NVVTFNVIMNELCKNGK 248
           +  T+  +M+ L K  K
Sbjct: 755 DKSTYINLMDGLIKRRK 771



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 23/144 (15%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N L   L K    D   +L   +    L PD YTYN +I      GR+      + ++
Sbjct: 630 TYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKM 689

Query: 79  LRSCFTPDAV-----------------------TFTSLIKGLCAESRIMEAAALFTKLRA 115
           L     PD V                        ++  IK LC E +  +A  +F + + 
Sbjct: 690 LEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQ 749

Query: 116 FGCKPDVFTYTTLINGLCRTGHTI 139
            G   D  TY  L++GL +   +I
Sbjct: 750 KGITVDKSTYINLMDGLIKRRKSI 773


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 182/358 (50%), Gaps = 34/358 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++NIL   L KN   D    LF  +++ G  PD  TY  +++  CK G++     +
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            GR     F P    + +LI G+C E RI  A  L  ++   G  P+V +Y+ +IN LC 
Sbjct: 237 AGR-----FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCV 291

Query: 135 TGHTIVALNLFEEM------ANGNGEFGVV-----------------------CKPDAIT 165
           +G+  +A  LF +M      AN +    ++                       C+P+ + 
Sbjct: 292 SGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA 351

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+  GLC  G +++A ++  +M+     P+V TY+ LI GF  + D   A   +  M+
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMI 411

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G +PNVVT+  +++ LCKN   D+A+ L+E M   G  P+   +NT + G C  GRV 
Sbjct: 412 SHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVE 471

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A +L   M+ +GC+ ++ +Y  L++   +  + E A  L+ E+ ++ ++P +VTYNT
Sbjct: 472 WAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNT 529



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 11/308 (3%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           +  L +F R+   G  P +  YN L++      +      +   + +    P+  T+  L
Sbjct: 126 EQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNIL 185

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           +K LC   R+  A  LF ++   GC PD  TYTT+++ LC+ G    A     E+A   G
Sbjct: 186 LKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA----RELA---G 238

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
            F    KP    Y+ + DG+CKEG ++ A +L  +M D  ++P+VV+Y+ +I   C + +
Sbjct: 239 RF----KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN 294

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
              A  LF +M  +G   N+ TF  ++      GK+ EA  L +LMIQ G  P+   YNT
Sbjct: 295 VELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNT 354

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ G C  G +  A ++   M+ +GC+ +V +Y ILI+G+ K+ ++ GA   ++ M+S G
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHG 414

Query: 334 IRPTVVTY 341
            RP VVTY
Sbjct: 415 CRPNVVTY 422



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 172/329 (52%), Gaps = 11/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   L     +  +  L+  +   GL P+++TYNIL+   CK  RV     +
Sbjct: 142 PTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKL 201

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PDAVT+T+++  LC   +I +A  L  +      KP V  Y  LI+G+C+
Sbjct: 202 FVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRF-----KPSVPVYNALIDGMCK 256

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA+ L  EM + NG       P+ ++YS I + LC  G V+ A  LF +M     
Sbjct: 257 EGRIEVAIKLLGEMMD-NG-----VDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGC 310

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + ++ T+T LI+G        EA  L+  M+  G +PNVV +N +++ LC NG ++EA +
Sbjct: 311 DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQ 370

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M + G  P+ + Y+ L+DGF  +G +  A E +  M S+GC  +V +Y  +++  C
Sbjct: 371 VCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLC 430

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           KN   + A SL  +M  +G  P  +T+NT
Sbjct: 431 KNSMFDQANSLVEKMTLEGCTPNTITFNT 459



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 167/336 (49%), Gaps = 11/336 (3%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R  PS P    +N L   + K    +  + L   +   G+ P++ +Y+ +IN  C  G V
Sbjct: 239 RFKPSVP---VYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295

Query: 69  SPGFVVLGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
              F +  ++ LR C   +  TFT LIKG     ++ EA  L+  +   GC+P+V  Y T
Sbjct: 296 ELAFALFAQMFLRGC-DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNT 354

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+GLC  G    AL + ++M          C P+  TYS + DG  K G +  A E + 
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSG------CLPNVTTYSILIDGFAKSGDLVGASETWN 408

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M      P+VVTYT ++   C  + +++A  L  +M  +G  PN +TFN  +  LC NG
Sbjct: 409 RMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNG 468

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           +++ A +LLE M   G  P+ + YN L+D      +   A  LF  +E+     ++ +Y 
Sbjct: 469 RVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYN 528

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++ G+ +   +  AL L+ + L +G  P  +TYNT
Sbjct: 529 TVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNT 564



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 164/323 (50%), Gaps = 8/323 (2%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           ++ GC  + K Y+  L L+K +   G  P++  YN LI+  C  G +     V  ++ RS
Sbjct: 320 LIKGCFMRGKLYEA-LDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS 378

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
              P+  T++ LI G      ++ A+  + ++ + GC+P+V TYT +++ LC+      A
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
            +L E+M          C P+ IT++T   GLC  G V+ A +L  +M+     P++ TY
Sbjct: 439 NSLVEKMTLEG------CTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTY 492

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
             L+      N + EA  LF E+  + +QPN+VT+N ++    + G M EA +L    + 
Sbjct: 493 NELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALV 552

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-NGCMRDVFSYGILINGYCKNKEIE 320
            G  PD+  YNT++  +C  G+V  A +L   + S      D+ +Y  LI G C    IE
Sbjct: 553 RGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIE 612

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A++   + +++GI P   T+N 
Sbjct: 613 EAMAFLDKAINQGICPNFATWNA 635



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 157/320 (49%), Gaps = 7/320 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L  N   +  L +  ++   G  P++ TY+ILI+ F K G +      
Sbjct: 347 PNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASET 406

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++     P+ VT+T ++  LC  S   +A +L  K+   GC P+  T+ T I GLC 
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCG 466

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ L E M  G+G     C P+  TY+ + D L +    ++A  LF +++  N+
Sbjct: 467 NGRVEWAMKLLERM-QGHG-----CLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNL 520

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++VTY +++ GF  A    EA  LF + + +G  P+ +T+N +++  CK GK+  A++
Sbjct: 521 QPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQ 580

Query: 255 LLELMIQIG-VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           L+E +  +    PD   Y +L+ G C    +  A        + G   +  ++  L+  +
Sbjct: 581 LVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640

Query: 314 CKNKEIEGALSLYSEMLSKG 333
             +    G + +  ++L KG
Sbjct: 641 FDSLGHMGPIHILDDILRKG 660



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 130/263 (49%), Gaps = 15/263 (5%)

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLINGLCRTGHT 138
           + F   A T+  +I+ L  E  +     +  +++  G  C  D+F    +ING  R G  
Sbjct: 68  NAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFI--CIINGYKRVGSA 125

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL +F  +    GEFG  CKP    Y+ + D L  E        L+  MK + + P+V
Sbjct: 126 EQALKMFYRI----GEFG--CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNV 179

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TY  L++  C  +  + A  LF+EM ++G  P+ VT+  +++ LCK GK+D+A  L   
Sbjct: 180 FTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGR 239

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
                 +P   VYN L+DG C  GR+  A +L   M  NG   +V SY  +IN  C +  
Sbjct: 240 F-----KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN 294

Query: 319 IEGALSLYSEMLSKGIRPTVVTY 341
           +E A +L+++M  +G    + T+
Sbjct: 295 VELAFALFAQMFLRGCDANIHTF 317



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 9/232 (3%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V ++  +   L KN  +D   SL +++   G  P+  T+N  I   C  GRV  
Sbjct: 413 HGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEW 472

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L R+      P+  T+  L+  L   ++  EA  LF ++ A   +P++ TY T++ 
Sbjct: 473 AMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLY 532

Query: 131 GLCRTGHTIVALNLF-EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           G  R G    AL LF + +  G         PD+ITY+T+    CK+G V  A +L  ++
Sbjct: 533 GFSRAGMMGEALQLFGKALVRGTA-------PDSITYNTMIHAYCKQGKVKIAAQLVERV 585

Query: 190 KD-ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
              +  +PD++TYTSLI G C   +  EA     + ++QG+ PN  T+N ++
Sbjct: 586 SSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 35/231 (15%)

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
           L  F  +AN N       +  A TY  + + L +E  +D  + +  +MK + IN     +
Sbjct: 58  LGFFSAIANSNA-----FQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLF 112

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
             +I G+       +A  +F  + + G +P V  +N +++ L    K    + L   M +
Sbjct: 113 ICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKK 172

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS---------------- 305
            G+ P+   YN L+   C   RV+ A +LFV M + GC  D  +                
Sbjct: 173 DGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDD 232

Query: 306 --------------YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                         Y  LI+G CK   IE A+ L  EM+  G+ P VV+Y+
Sbjct: 233 ARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYS 283



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 57/108 (52%)

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           F  I+N   + G  ++A ++   + + G +P   +YN L+D      +      L+ +M+
Sbjct: 112 FICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMK 171

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +G + +VF+Y IL+   CKN  ++ A  L+ EM +KG  P  VTY T
Sbjct: 172 KDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTT 219


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 174/330 (52%), Gaps = 7/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L K         + + +   G  P++YT+  LI+  CK G     F +
Sbjct: 285 PNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRL 344

Query: 75  LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
             +++RS  + P+  T+TS+I G C E ++  A  LF++++  G  P+V TYTTLING C
Sbjct: 345 FLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHC 404

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    +     E+ N  G+ G +  P+  TY+   D LCK+    +A EL  K     
Sbjct: 405 KAG----SFGRAYELMNLMGDEGFM--PNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCG 458

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  D VTYT LI+  C  ND N+A   F  M   G + ++   N+++   C+  KM E+ 
Sbjct: 459 LEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESE 518

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RL +L++ +G+ P    Y +++  +C  G ++ A + F +M+ +GC+ D F+YG LI+G 
Sbjct: 519 RLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGL 578

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK   ++ A  LY  M+ +G+ P  VT  T
Sbjct: 579 CKKSMVDEACKLYEAMIDRGLSPPEVTRVT 608



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 157/297 (52%), Gaps = 5/297 (1%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PD  T  +++   C+ G V+       +++   F P+ + FTSLI GLC +  I +A
Sbjct: 247 GFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQA 306

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +  ++   G KP+V+T+T LI+GLC+ G T  A  LF ++   +       KP+  TY
Sbjct: 307 FEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD-----TYKPNVHTY 361

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +++  G CKE  +++A+ LF +MK++ + P+V TYT+LI G C A  +  A  L   M D
Sbjct: 362 TSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGD 421

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G  PN+ T+N  ++ LCK  +  EA  LL      G+  D   Y  L+   C    +N+
Sbjct: 422 EGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQ 481

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A   F  M   G   D+    ILI  +C+ K+++ +  L+  ++S G+ PT  TY +
Sbjct: 482 ALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTS 538



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/298 (34%), Positives = 154/298 (51%), Gaps = 9/298 (3%)

Query: 38  SLFKRLNSIGLFPDLYTYNIL-INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           ++F  ++  G+ PD  +Y ++ I CF + G++      L  +++  F PD  T T ++  
Sbjct: 203 NVFDEMSVRGVVPDSSSYKLMVIGCF-RDGKIQEADRWLTGMIQRGFIPDNATCTLILTA 261

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
           LC    +  A   F K+   G KP++  +T+LI+GLC+ G    A  + EEM   NG   
Sbjct: 262 LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR-NG--- 317

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWN 215
              KP+  T++ + DGLCK G+ +KA  LFLK+ + +   P+V TYTS+I G+C  +  N
Sbjct: 318 --WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLN 375

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
            A+ LF  M +QG+ PNV T+  ++N  CK G    A  L+ LM   G  P+   YN  +
Sbjct: 376 RAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAI 435

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           D  C   R   A EL     S G   D  +Y ILI   CK  +I  AL+ +  M   G
Sbjct: 436 DSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTG 493



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 141/287 (49%), Gaps = 7/287 (2%)

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           ++  F ++GR++    ++  +     TP ++T   +++       I  A  +F ++   G
Sbjct: 153 MLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRG 212

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
             PD  +Y  ++ G  R G    A    +    G  + G +  PD  T + I   LC+ G
Sbjct: 213 VVPDSSSYKLMVIGCFRDGKIQEA----DRWLTGMIQRGFI--PDNATCTLILTALCENG 266

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            V++A   F KM D    P+++ +TSLI G C      +A  +  EM+  G +PNV T  
Sbjct: 267 LVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHT 326

Query: 238 VIMNELCKNGKMDEASRL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            +++ LCK G  ++A RL L+L+     +P+   Y +++ G+C   ++NRA+ LF  M+ 
Sbjct: 327 ALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKE 386

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G   +V +Y  LING+CK      A  L + M  +G  P + TYN 
Sbjct: 387 QGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNA 433



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 145/340 (42%), Gaps = 9/340 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ++R     P V ++  + G   K    +    LF R+   GLFP++ TY  LIN
Sbjct: 342 FRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 401

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G     + ++  +    F P+  T+ + I  LC +SR  EA  L  K  + G + 
Sbjct: 402 GHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEA 461

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT LI   C+      AL  F  M     E       D    + +    C++  + 
Sbjct: 462 DGVTYTILIQEQCKQNDINQALAFFCRMNKTGFE------ADMRLNNILIAAFCRQKKMK 515

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +++ LF  +    + P   TYTS+I  +C   D + A   F  M   G  P+  T+  ++
Sbjct: 516 ESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLI 575

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK   +DEA +L E MI  G+ P      TL   +C       A  L   ++    +
Sbjct: 576 SGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKKLWI 635

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           R V +   L+   C  K++  A   + ++L K      VT
Sbjct: 636 RTVRT---LVRKLCSEKKVGVAALFFQKLLEKDSSADRVT 672



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 124/268 (46%), Gaps = 16/268 (5%)

Query: 92  SLIKGLCAESRIMEA------AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA--LN 143
           +++  L +ES  M A      A  F K R F     V   + L NG  +  H ++   L 
Sbjct: 96  TVVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLVTADSLLANGNLQKAHEVMRCMLR 155

Query: 144 LFEEMANGNGEFGVV-------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            F E+   N   G+V         P +IT + + +   + G ++ A+ +F +M    + P
Sbjct: 156 NFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVP 215

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D  +Y  ++ G        EA      M+ +G  P+  T  +I+  LC+NG ++ A    
Sbjct: 216 DSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYF 275

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             MI +G +P+   + +L+DG C  G + +A E+   M  NG   +V+++  LI+G CK 
Sbjct: 276 RKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKR 335

Query: 317 KEIEGALSLYSEML-SKGIRPTVVTYNT 343
              E A  L+ +++ S   +P V TY +
Sbjct: 336 GWTEKAFRLFLKLVRSDTYKPNVHTYTS 363


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 176/344 (51%), Gaps = 9/344 (2%)

Query: 1   FCIFDYMLRMHPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
             + D M R   +P PP+  ++++     +   + + + + + L++ G   D+   N+++
Sbjct: 142 LAVLDEMPRRGCAPIPPM--YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVL 199

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           N  C  G V     +L  +      PD V++ +++KGLC   R      L  ++    C 
Sbjct: 200 NAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACP 259

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P++ T+ TLI+ LCR G       +  +MA    E G  C PD   Y+TI DG+CKEG +
Sbjct: 260 PNIVTFNTLISYLCRNGLFERVHEVLAQMA----EHG--CTPDIRMYATIIDGICKEGHL 313

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
             A E+  +M    + P+VV Y +L++G C A  W E + L  EM D+    + VTFN++
Sbjct: 314 KVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNIL 373

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+NG +D    LLE M+  G  PD   Y T+++GFC  G ++ A  L  SM + GC
Sbjct: 374 VDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGC 433

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  SY I++ G C  +    A  L S+M+ +G     +T+NT
Sbjct: 434 KPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNT 477



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 170/342 (49%), Gaps = 9/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + M+RM   PP + +FN L   L +N  ++ V  +  ++   G  PD+  Y  +I+  
Sbjct: 249 LMEEMVRMA-CPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGI 307

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     +L R+      P+ V + +L+KGLC+  R  E   L  ++    C  D 
Sbjct: 308 CKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            T+  L++  C+ G     + L E+M  +G       C PD ITY+T+ +G CKEG +D+
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLVHG-------CMPDVITYTTVINGFCKEGLIDE 420

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L   M      P+ ++YT +++G C A  W +A+ L  +M+ QG   N +TFN ++N
Sbjct: 421 AVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLIN 480

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G +++A  LL+ M+  G  PD   Y+T++DG    G+ + A EL   M + G   
Sbjct: 481 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 540

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   Y  + +   +   I   + ++  +    IR   V YN 
Sbjct: 541 NTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNA 582



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 171/341 (50%), Gaps = 9/341 (2%)

Query: 6   YMLRMHPS---PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++LR  PS    P V S+N +   L   K +  V  L + +  +   P++ T+N LI+  
Sbjct: 213 HLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYL 272

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G       VL ++     TPD   + ++I G+C E  +  A  +  ++ ++G KP+V
Sbjct: 273 CRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNV 332

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y TL+ GLC          L  EM      F   C  D +T++ + D  C+ G VD+ 
Sbjct: 333 VCYNTLLKGLCSAERWEETEELLAEM------FDKDCPLDDVTFNILVDFFCQNGLVDRV 386

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL  +M      PDV+TYT++I GFC     +EA  L   M   G +PN +++ +++  
Sbjct: 387 IELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKG 446

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC   +  +A  L+  MIQ G   +   +NTL++  C  G V +A EL   M  NGC  D
Sbjct: 447 LCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 506

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + SY  +I+G  K  + + AL L + M++KG+ P  + Y++
Sbjct: 507 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSS 547



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 166/319 (52%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   L   + ++    L   +       D  T+NIL++ FC+ G V     +
Sbjct: 330 PNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIEL 389

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L     PD +T+T++I G C E  I EA  L   + A GCKP+  +YT ++ GLC 
Sbjct: 390 LEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCS 449

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A +L  +M          C  + IT++T+ + LCK+G V++A EL  +M     
Sbjct: 450 AERWVDAEDLMSQMIQQG------CPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGC 503

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD+++Y+++I G   A   +EA  L   M+++G+ PN + ++ I + L + G++++  +
Sbjct: 504 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQ 563

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + +    +R DA +YN ++   C  G   RA E    M S+GC+ +  +Y ILI G  
Sbjct: 564 MFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLA 623

Query: 315 KNKEIEGALSLYSEMLSKG 333
               ++ A  + +E+ SKG
Sbjct: 624 SEGFVKEAQEMLTELCSKG 642



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 149/284 (52%), Gaps = 8/284 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FNIL     +N   D V+ L +++   G  PD+ TY  +IN FCK G +    ++L  +
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 428

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ +++T ++KGLC+  R ++A  L +++   GC  +  T+ TLIN LC+ G  
Sbjct: 429 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLV 488

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A+ L ++M  NG       C PD I+YST+ DGL K G  D+A EL   M ++ ++P+
Sbjct: 489 EQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 541

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + Y+S+          N+   +F  + D  ++ + V +N +++ LCK G+ + A   L 
Sbjct: 542 TIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLA 601

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            M+  G  P+ S Y  L+ G    G V  A+E+   + S G +R
Sbjct: 602 YMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGALR 645



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 111/291 (38%), Gaps = 47/291 (16%)

Query: 88  VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           V  +SLI+ LCA  R  EAA   +          V  Y  ++ G CR G    A  L   
Sbjct: 59  VRLSSLIRSLCAAGRTAEAARALSAAGGGA---GVVAYNAMVAGYCRAGQLESARRLAA- 114

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
                    V   P+A TY  +   LC  G +  A  +  +M      P    Y  ++  
Sbjct: 115 --------AVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEA 166

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    +  A  +  ++  +G   +V   N+++N +C  G +D+A  LL  +   G  PD
Sbjct: 167 ACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPD 226

Query: 268 ASVYNTLMDGFCLTGR-----------------------------------VNRAKELFV 292
              YN ++ G C+  R                                     R  E+  
Sbjct: 227 VVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLA 286

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M  +GC  D+  Y  +I+G CK   ++ A  + + M S G++P VV YNT
Sbjct: 287 QMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNT 337


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 176/334 (52%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   +K +   G    LY +NIL++ FCK G
Sbjct: 91  LTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +L+ G   +  + +   L + + A G +PDV+TY+
Sbjct: 151 EIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF EM +     G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 211 VLINGLCKESKMDEANELFXEMLDK----GLV--PNGVTFTTLIDGHCKNGKVDLAMEIY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A+ L  EM  +G++P+ +T+  +++  CK+
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKD 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A    + MI+  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 325 GDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK  ++     L  EM   G  P+VVT
Sbjct: 385 TMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G    ++ +  L++  C+ G   ++ ++F+ +     ++G+  +P  ++++T+ +G  ++
Sbjct: 131 GYPASLYFFNILMHRFCKEGEIRLSQSVFDAIR----KWGL--RPSVVSFNTLMNGYIRQ 184

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +DK   L   M    + PDV TY+ LI G C  +  +EA  LF EM+D+G+ PN VTF
Sbjct: 185 GDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTF 244

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++  CKNGK+D A  + + M+   + PD   YNTL+ G C  G + +A+ L   M  
Sbjct: 245 TTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSM 304

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G   D  +Y  LI+G CK+ ++E A      M+ + IR   V Y 
Sbjct: 305 KGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYT 350



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 100/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CKEG +  ++ +F  ++   + P VV++ +L+ G+    D ++   L   M   GVQP+V
Sbjct: 147 CKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDV 206

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMDEA+ L   M+  G+ P+   + TL+DG C  G+V+ A E++  
Sbjct: 207 YTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQ 266

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  LI G CK  +++ A +L +EM  KG++P  +TY T
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTT 316



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + +Y T+I+ LC     + A  L + + +  G+      F  +       + D   +S +
Sbjct: 13  LHSYCTMIHFLCTHQMLLEAKTLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYVFSGL 72

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E +   ++        T   ++        +      + E+++ G 
Sbjct: 73  ITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGY 132

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK G++  +  + + + + G+RP    +NTLM+G+   G +++   
Sbjct: 133 PASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFR 192

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTT 246


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 180/327 (55%), Gaps = 9/327 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVVLGR 77
           ++N L   L        V++LF+R     ++ PD++++N++I   C++G+V     ++ R
Sbjct: 48  AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVER 107

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTG 136
           +     +PD VT   L+ GLC  + +     +  +L+  G C P+V T+T++I+G C+ G
Sbjct: 108 MNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAG 167

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ ++ +M       G++  P+ +TY+ + +G  K G +  A E++ +M      P
Sbjct: 168 KLEDAMAVYNDMVAS----GIM--PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPP 221

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DVVT++SLI G+C     ++A  ++ +M    +QPNV TF++I++ LCK  + DEA  LL
Sbjct: 222 DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLL 281

Query: 257 -ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            EL ++  + P A +YN ++D  C  G+V+ A  +   ME  GC  D ++Y ILI GYC 
Sbjct: 282 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCM 341

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
              I  A+  + EM+  G  P  +T N
Sbjct: 342 KSRISEAIMFFHEMVEAGCSPDSITVN 368



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 161/311 (51%), Gaps = 8/311 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+  ++     P V SFN++   + +       L L +R+N  G  PD  T+NIL++  
Sbjct: 68  LFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGL 127

Query: 63  CKMGRVSPGFVVLGRILRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           C+   VS G  VL R+ R     P+ VTFTS+I G C   ++ +A A++  + A G  P+
Sbjct: 128 CRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPN 187

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TY  LING  + G    A+ ++++M        + C PD +T+S++ DG C+ G +D 
Sbjct: 188 TVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRCGQLDD 241

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIM 240
           A  ++  M    I P+V T++ +I   C  N  +EA  L  E+ +   + P    +N ++
Sbjct: 242 ALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVI 301

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK GK+DEA+ + + M + G RPD   Y  L+ G+C+  R++ A   F  M   GC 
Sbjct: 302 DVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCS 361

Query: 301 RDVFSYGILIN 311
            D  +    I+
Sbjct: 362 PDSITVNCFIS 372



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 143/262 (54%), Gaps = 13/262 (4%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKL---RAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           +A  +  L+  L    R+ +  ALF +    R +   PDV+++  +I G+CR G    AL
Sbjct: 45  EAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVY--SPDVWSFNVVIKGVCRVGQVQKAL 102

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI-NPDVVTY 201
            L E M     EFG  C PD +T++ + DGLC+   V +  E+  +++ + +  P+VVT+
Sbjct: 103 ELVERM----NEFG--CSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTF 156

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           TS+I G+C A    +A  ++ +M+  G+ PN VT+NV++N   K G +  A  + + M +
Sbjct: 157 TSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR 216

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
           +   PD   +++L+DG+C  G+++ A  ++  M  +    +V+++ I+I+  CK    + 
Sbjct: 217 LRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDE 276

Query: 322 ALSLYSEM-LSKGIRPTVVTYN 342
           A+ L +E+ L   I P    YN
Sbjct: 277 AIGLLNELNLRPDIAPQAFIYN 298



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 128/244 (52%), Gaps = 5/244 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  +     K    +  ++++  + + G+ P+  TYN+LIN + K+G +     V
Sbjct: 151 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 210

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++ R    PD VTF+SLI G C   ++ +A  +++ +     +P+V+T++ +I+ LC+
Sbjct: 211 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 270

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
              +  A+ L  E+ N   +      P A  Y+ + D LCK G VD+A  +   M+++  
Sbjct: 271 QNRSDEAIGLLNEL-NLRPDIA----PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGC 325

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TYT LI G+C  +  +EA   F EM++ G  P+ +T N  ++ L K G  +E   
Sbjct: 326 RPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDH 385

Query: 255 LLEL 258
           ++ L
Sbjct: 386 VMRL 389



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 101/192 (52%), Gaps = 4/192 (2%)

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK-MKDENINPDVVTYTSLIRGFCYAN 212
           EFG  C+ +A  Y+ +   L   G V     LF + ++D   +PDV ++  +I+G C   
Sbjct: 39  EFG--CRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVG 96

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV-RPDASVY 271
              +A  L   M + G  P+ VT N++++ LC+  ++     +L  + + GV  P+   +
Sbjct: 97  QVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTF 156

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
            +++ G+C  G++  A  ++  M ++G M +  +Y +LINGY K  ++  A+ +Y +M  
Sbjct: 157 TSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR 216

Query: 332 KGIRPTVVTYNT 343
               P VVT+++
Sbjct: 217 LRCPPDVVTFSS 228


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 165/327 (50%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + S+N +   L   K +  V  L   +  +   P++ T+N LI   C+ G       VL 
Sbjct: 216 IVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLA 275

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++     TPD   + ++I G+C E  +  A  +  ++ ++G KP+V  Y T++ GLC   
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L  EM      F   C  D +T++ + D  C+ G VD+  EL  +M      P
Sbjct: 336 RWKEAEELLSEM------FQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMP 389

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DV+TYT++I GFC     +EA  L   M   G +PN V++ +++  LC  G+  +A  L+
Sbjct: 390 DVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELM 449

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             MIQ G  P+   +NTL++  C  G V +A EL   M  NGC  D+ SY  +I+G  K 
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 509

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + E AL L + M++KGI P  + Y++
Sbjct: 510 GKTEEALELLNVMVNKGISPNTIIYSS 536



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 172/341 (50%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R+  +P  + +FN L G L +N  ++ V  +  +++  G  PD+  Y  +I+  
Sbjct: 238 LMDEMVRVDCAPN-IVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     +L R+      P+ V + +++KGLC+  R  EA  L +++    C  D 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  L++  C+ G     + L E+M +        C PD ITY+T+ +G CKEG +D+A
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHG------CMPDVITYTTVINGFCKEGLIDEA 410

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M      P+ V+YT +++G C A  W +A+ L  +M+ QG  PN VTFN ++N 
Sbjct: 411 VMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINF 470

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +++A  LL+ M+  G  PD   Y+T++DG    G+   A EL   M + G   +
Sbjct: 471 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              Y  +     +   +   + ++  +    IR   V YN 
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 172/335 (51%), Gaps = 15/335 (4%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P PP    ++++     ++  +   + + + +++ G   D    N+++N  C+ G V   
Sbjct: 144 PIPP---MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +L ++       D V++ +++KGLC   R  +   L  ++    C P++ T+ TLI  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 132 LCRTGHTIVALNLFE---EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           LCR G       LFE   E+     E G  C PD   Y+TI DG+CKEG ++ A E+  +
Sbjct: 261 LCRNG-------LFERVHEVLAQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M    + P+VV Y ++++G C A  W EA+ L  EM  +    + VTFN++++  C+NG 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +D    LLE M+  G  PD   Y T+++GFC  G ++ A  L  SM S GC  +  SY I
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ G C       A  L S+M+ +G  P  VT+NT
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 148/284 (52%), Gaps = 8/284 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FNIL     +N   D V+ L +++ S G  PD+ TY  +IN FCK G +    ++L  +
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ V++T ++KGLC+  R ++A  L +++   GC P+  T+ TLIN LC+ G  
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A+ L ++M  NG       C PD I+YST+ DGL K G  ++A EL   M ++ I+P+
Sbjct: 478 EQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + Y+S+          N+   +F  + D  ++ + V +N +++ LCK  + D A     
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            M+  G  P+ S Y  L+ G    G    A+EL   + S G +R
Sbjct: 591 YMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALR 634



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 128/291 (43%), Gaps = 46/291 (15%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
            YN ++  +C+ G+++    +   +      P+A TF  +++GLC   RI +A  +  ++
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDG 172
              GC P    Y  ++   CR+G    ++ + E M A G       C  D    + + + 
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG-------CTLDTGNCNLVLNA 190

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           +C++G VD+A  L  K+                               F      G + +
Sbjct: 191 ICEQGCVDEAVGLLRKLA-----------------------------FF------GCEAD 215

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           +V++N ++  LC   +  +   L++ M+++   P+   +NTL+   C  G   R  E+  
Sbjct: 216 IVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLA 275

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M  +GC  D+  Y  +I+G CK   +E A  + + M S G++P VV YNT
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 127/309 (41%), Gaps = 58/309 (18%)

Query: 92  SLIKGLCAESRI------------MEAAALFTKLRAFGCK-----------------PDV 122
           +LI+ LC+  R                   +  + A  C+                 P+ 
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGDAAGVVAYNAMVAGYCRAGQLAAARRLAAAVPVPPNA 111

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM------------------ANGNGEF--------- 155
           +T+  ++ GLC  G    AL + +EM                  A  +G F         
Sbjct: 112 YTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEA 171

Query: 156 --GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                C  D    + + + +C++G VD+A  L  K+       D+V+Y ++++G C A  
Sbjct: 172 MHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKR 231

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           W + + L  EM+     PN+VTFN ++  LC+NG  +    +L  M + G  PD  +Y T
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++DG C  G +  A E+   M S G   +V  Y  ++ G C  +  + A  L SEM  K 
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 334 IRPTVVTYN 342
                VT+N
Sbjct: 352 CPLDDVTFN 360


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 170/327 (51%), Gaps = 15/327 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F++L  CL +N   D  + + ++++  G  PD   YN LI  F + GRV     +
Sbjct: 347 PNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKL 406

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +   C +PD ++F + +KGLC   R  +A  L  ++    C     T+  LI+ LC+
Sbjct: 407 LNSM--PC-SPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQ 463

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ +FE+M     ++G  C PD +TYS++ +GL ++G V+ A ELF  M     
Sbjct: 464 NGRVNNAIEVFEQMP----KYG--CTPDIVTYSSLINGLSEQGLVESAIELFQSMP---C 514

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+  Y ++++G C A  W +A  L   M  +   PN +TFN+++N LC+ G +D A  
Sbjct: 515 KPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIE 574

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E M + G  PD   YN L++GF   GR++ A+ L  +M    C  D  SY   + G C
Sbjct: 575 VFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTM---SCKPDAVSYNSALKGLC 631

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +  + A  + +EML     P  VT+
Sbjct: 632 RAERWKEAEEVVAEMLRMKCPPNEVTF 658



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 176/372 (47%), Gaps = 51/372 (13%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+R H  PP   +F        +N   D  + L  R+   G  PD+  Y+ L+N F + G
Sbjct: 238 MVRNH-CPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQG 296

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           RV     +L  +L     P+ + + + +KGLC   R  +   L  ++    C P+  T++
Sbjct: 297 RVDDAIELLNGML---CKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFS 353

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            L + LC+ G    A+ + E+M     ++G  C+PDA+ Y+T+     ++G VD A +L 
Sbjct: 354 MLTSCLCQNGLVDCAMEVLEQM----HKYG--CRPDAVIYNTLIYSFSEQGRVDDALKLL 407

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M     +PDV+++ + ++G C A  W++A+ L ++M+ +      +TFN++++ LC+N
Sbjct: 408 NSMP---CSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQN 464

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G+++ A  + E M + G  PD   Y++L++G    G V  A ELF SM    C  D+F Y
Sbjct: 465 GRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSMP---CKPDIFGY 521

Query: 307 G-----------------------------------ILINGYCKNKEIEGALSLYSEMLS 331
                                               ILIN  C+   ++ A+ ++ +M  
Sbjct: 522 NAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPK 581

Query: 332 KGIRPTVVTYNT 343
            G  P + TYN 
Sbjct: 582 YGSTPDIFTYNA 593



 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 152/292 (52%), Gaps = 15/292 (5%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           ++ TY  LIN +C+ GR++    ++  +      PD  T+ +++ GLC   +  +A AL 
Sbjct: 179 NVVTYTTLINGYCRSGRLADALALIASMP---VAPDTYTYNTVLMGLCGARQWEDAEALM 235

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++    C P+  T+ T I   C+ G    A+ L + M     ++G  C PD + YST+ 
Sbjct: 236 AEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMP----QYG--CTPDVVIYSTLV 289

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +G  ++G VD A EL   M      P+ + Y + ++G C A  W +   L +EM+ +   
Sbjct: 290 NGFSEQGRVDDAIELLNGML---CKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCL 346

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN  TF+++ + LC+NG +D A  +LE M + G RPDA +YNTL+  F   GRV+ A +L
Sbjct: 347 PNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKL 406

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             SM    C  DV S+   + G C+ +  + A  L  +ML +      +T+N
Sbjct: 407 LNSMP---CSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFN 455



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 157/358 (43%), Gaps = 61/358 (17%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           + S+ + PD YTYN ++   C   +      ++  ++R+   P+ VTF + I+  C    
Sbjct: 203 IASMPVAPDTYTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGL 262

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-------------- 148
           +  A  L  ++  +GC PDV  Y+TL+NG    G    A+ L   M              
Sbjct: 263 LDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGMLCKPNTICYNAALK 322

Query: 149 ----ANGNGEFGVV--------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A    + G +        C P+  T+S +T  LC+ G VD A E+  +M      P
Sbjct: 323 GLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRP 382

Query: 197 DVVTYTSLI--------------------------------RGFCYANDWNEAKCLFIEM 224
           D V Y +LI                                +G C A  W++A+ L ++M
Sbjct: 383 DAVIYNTLIYSFSEQGRVDDALKLLNSMPCSPDVISFNAALKGLCRAERWDDAEELIVQM 442

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + +      +TFN++++ LC+NG+++ A  + E M + G  PD   Y++L++G    G V
Sbjct: 443 LREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLV 502

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             A ELF SM    C  D+F Y  ++ G C+    E A  L S M  K   P  +T+N
Sbjct: 503 ESAIELFQSMP---CKPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFN 557



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 129/283 (45%), Gaps = 43/283 (15%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LIK LCA+ R+ +A  +   L+A G   D  ++ TL+ G CR G          +     
Sbjct: 118 LIKKLCAQRRLADAERVLDALKAAGAA-DPVSHNTLVAGYCRDGR-------LADAERLL 169

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
              G+    + +TY+T+ +G C+ G +  A  L   M    + PD  TY +++ G C A 
Sbjct: 170 AAAGLSGAANVVTYTTLINGYCRSGRLADALALIASMP---VAPDTYTYNTVLMGLCGAR 226

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W +A+ L  EM+     PN VTF   +   C+NG +D A +LL+ M Q G  PD  +Y+
Sbjct: 227 QWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYS 286

Query: 273 TLMDGFCLTGRVNRAKELF--------------------------------VSMESNGCM 300
           TL++GF   GRV+ A EL                                 V M    C+
Sbjct: 287 TLVNGFSEQGRVDDAIELLNGMLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCL 346

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  ++ +L +  C+N  ++ A+ +  +M   G RP  V YNT
Sbjct: 347 PNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNT 389



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 120/273 (43%), Gaps = 41/273 (15%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +L   P  P V SFN     L + + +D    L  ++          T+NILI+  C+ G
Sbjct: 406 LLNSMPCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNG 465

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           RV+    V  ++ +   TPD VT++SLI GL  +  +  A  LF   ++  CKPD+F Y 
Sbjct: 466 RVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELF---QSMPCKPDIFGYN 522

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            ++ GLCR      A  L   MA  +      C P+ IT++ + + LC++G VD+A E+F
Sbjct: 523 AVLKGLCRAARWEDAGELISNMARKD------CPPNEITFNILINSLCQKGLVDRAIEVF 576

Query: 187 LKMKDENINPDVVTYTSLIRGF--------------------------------CYANDW 214
            +M      PD+ TY +LI GF                                C A  W
Sbjct: 577 EQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTMSCKPDAVSYNSALKGLCRAERW 636

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            EA+ +  EM+     PN VTF         NG
Sbjct: 637 KEAEEVVAEMLRMKCPPNEVTFKYANRLFVPNG 669


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 173/335 (51%), Gaps = 5/335 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN--CFCKMGRVSP 70
           S   +  FN    CL K   + T ++LF + N    F       + I   CF  +G VS 
Sbjct: 32  SHSSLAHFNKHLTCLMKTNQHSTAIALFNQ-NEYNNFITPCIITLTIIITCFFHLGHVSF 90

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            F + G+IL+  +  D V   +++KGLC    +++A     ++   G   +  +Y  LIN
Sbjct: 91  SFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILIN 150

Query: 131 GLCRTGHTIVALNLFEEMANGNGEF--GVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           GLC  G    A+NL   +     +   G   K + + YS + D LC+ GFVD+  E + +
Sbjct: 151 GLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNE 210

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M    + P+  TY SLIRG C    + E   L  EM+ +G+  +V  F V+++ LCKNG 
Sbjct: 211 MMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGM 270

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + EA  + + M+  G  P+      LM G+CL G V+ A+ELF ++   G  RDV++Y +
Sbjct: 271 LVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNV 330

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            I+GYCK   +  A+ ++ EM  +G+ P +VTYN+
Sbjct: 331 FIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNS 365



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 178/332 (53%), Gaps = 14/332 (4%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSI------GLF--PDLYTYNILINCFCKMGRVSP 70
           S+ IL   L +N   +  ++L + +         G F   ++  Y+I+I+C C+ G V  
Sbjct: 144 SYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDE 203

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
           GF     ++ +   P+  T+ SLI+GLC   + +E   L  ++   G    V+ +T LI+
Sbjct: 204 GFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLID 263

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLC+ G  + A  +F+EM N   E      P+ +T + +  G C +G VD A+ELF  + 
Sbjct: 264 GLCKNGMLVEAREMFDEMVNRGYE------PNIVTCTALMGGYCLKGNVDMARELFDAIG 317

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           +     DV TY   I G+C      +A  +F EM  +GV PN+VT+N +++ LCK G++ 
Sbjct: 318 EWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVS 377

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            A  +++ M + G+ PD      L+DG C + R+++A  LF  +  +G   DV+SY ILI
Sbjct: 378 GAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILI 437

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +G C ++ +  A++L  +M  K + P +VTY+
Sbjct: 438 HGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYS 469



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 166/326 (50%), Gaps = 6/326 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  ++I+  CL +N   D     +  +   G+ P+ +TY  LI   C +G+   GF ++ 
Sbjct: 185 VVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVD 244

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++R         FT LI GLC    ++EA  +F ++   G +P++ T T L+ G C  G
Sbjct: 245 EMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKG 304

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +  +A  LF+ +    GE+G   K D  TY+    G CK G V  A  +F +M  E + P
Sbjct: 305 NVDMARELFDAI----GEWGF--KRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVP 358

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           ++VTY SLI   C A + + A  +   M   G+ P++VT  ++++ LCK+ ++D+A  L 
Sbjct: 359 NIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLF 418

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             +++ G+ PD   Y  L+ G C + R+  A  L   M     +  + +Y  LI+G C++
Sbjct: 419 NQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRS 478

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
             I  A  L +EM  KG  P  +TY+
Sbjct: 479 GRISNAWRLLNEMHVKGPLPDTITYS 504



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 156/315 (49%), Gaps = 9/315 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +FD M+     P  V    ++ G CL  N   D    LF  +   G   D++TYN+ I+ 
Sbjct: 277 MFDEMVNRGYEPNIVTCTALMGGYCLKGN--VDMARELFDAIGEWGFKRDVWTYNVFIHG 334

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           +CK+GRV     V   + R    P+ VT+ SLI  LC    +  A  +   +   G  PD
Sbjct: 335 YCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPD 394

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + T   L++GLC++     A+ LF ++     E G+   PD  +Y+ +  G C    + +
Sbjct: 395 IVTCCILLDGLCKSKRLDQAILLFNQLV----ESGLT--PDVWSYTILIHGCCTSRRMGE 448

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L   M  +N+ P +VTY+ LI G C +   + A  L  EM  +G  P+ +T++++++
Sbjct: 449 AMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLD 508

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            L K   +DEA  L   MI+ G+ PD   Y  ++DG+C + R++ A  LF  M     + 
Sbjct: 509 ALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVP 568

Query: 302 DVFSYGILINGYCKN 316
           D+ +Y IL N   K+
Sbjct: 569 DIVTYTILFNAVFKS 583



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 137/266 (51%), Gaps = 6/266 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+      K       + +F  +   G+ P++ TYN LI+C CK G VS  + ++ 
Sbjct: 325 VWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVK 384

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + RS  TPD VT   L+ GLC   R+ +A  LF +L   G  PDV++YT LI+G C + 
Sbjct: 385 TMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSR 444

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+NL  +M   N        P  +TYS + DGLC+ G +  A  L  +M  +   P
Sbjct: 445 RMGEAMNLLRDMHLKN------LVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLP 498

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D +TY+ L+         +EA  LF +M+ +G++P+V+ + ++++  CK+ ++DEA  L 
Sbjct: 499 DTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLF 558

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTG 282
             M    + PD   Y  L +    +G
Sbjct: 559 REMHMKNLVPDIVTYTILFNAVFKSG 584



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 135/269 (50%), Gaps = 7/269 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R     P + ++N L  CL K         + K ++  GL PD+ T  IL++  
Sbjct: 347 VFDEMCR-EGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGL 405

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  R+    ++  +++ S  TPD  ++T LI G C   R+ EA  L   +      P +
Sbjct: 406 CKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHI 465

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY+ LI+GLCR+G    A  L  EM +  G       PD ITYS + D L K+  +D+A
Sbjct: 466 VTYSCLIDGLCRSGRISNAWRLLNEM-HVKGPL-----PDTITYSILLDALWKKQHLDEA 519

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M    + PDV+ YT +I G+C +   +EA  LF EM  + + P++VT+ ++ N 
Sbjct: 520 VFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNA 579

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVY 271
           + K+G      + + ++  I   P    Y
Sbjct: 580 VFKSGSNSYEWKFVNVIRDINPPPRVLKY 608


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 165/327 (50%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + S+N +   L   K +  V  L   +  +   P++ T+N LI   C+ G       VL 
Sbjct: 216 IVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLA 275

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++     TPD   + ++I G+C E  +  A  +  ++ ++G KP+V  Y T++ GLC   
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L  EM      F   C  D +T++ + D  C+ G VD+  EL  +M      P
Sbjct: 336 RWKEAEELLSEM------FQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMP 389

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DV+TYT++I GFC     +EA  L   M   G +PN V++ +++  LC  G+  +A  L+
Sbjct: 390 DVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELM 449

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             MIQ G  P+   +NTL++  C  G V +A EL   M  NGC  D+ SY  +I+G  K 
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 509

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + E AL L + M++KGI P  + Y++
Sbjct: 510 GKTEEALELLNVMVNKGISPNTIIYSS 536



 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 171/341 (50%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R+    P + +FN L G L +N  ++ V  +  +++  G  PD+  Y  +I+  
Sbjct: 238 LMDEMVRVD-CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     +L R+      P+ V + +++KGLC+  R  EA  L +++    C  D 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  L++  C+ G     + L E+M +        C PD ITY+T+ +G CKEG +D+A
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHG------CMPDVITYTTVINGFCKEGLIDEA 410

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M      P+ V+YT +++G C A  W +A+ L  +M+ QG  PN VTFN ++N 
Sbjct: 411 VMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINF 470

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +++A  LL+ M+  G  PD   Y+T++DG    G+   A EL   M + G   +
Sbjct: 471 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              Y  +     +   +   + ++  +    IR   V YN 
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 172/335 (51%), Gaps = 15/335 (4%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P PP    ++++     ++  +   + + + +++ G   D    N+++N  C+ G V   
Sbjct: 144 PIPP---MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +L ++       D V++ +++KGLC   R  +   L  ++    C P++ T+ TLI  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 132 LCRTGHTIVALNLFE---EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           LCR G       LFE   E+     E G  C PD   Y+TI DG+CKEG ++ A E+  +
Sbjct: 261 LCRNG-------LFERVHEVLAQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M    + P+VV Y ++++G C A  W EA+ L  EM  +    + VTFN++++  C+NG 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +D    LLE M+  G  PD   Y T+++GFC  G ++ A  L  SM S GC  +  SY I
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ G C       A  L S+M+ +G  P  VT+NT
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 148/284 (52%), Gaps = 8/284 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FNIL     +N   D V+ L +++ S G  PD+ TY  +IN FCK G +    ++L  +
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ V++T ++KGLC+  R ++A  L +++   GC P+  T+ TLIN LC+ G  
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A+ L ++M  NG       C PD I+YST+ DGL K G  ++A EL   M ++ I+P+
Sbjct: 478 EQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + Y+S+          N+   +F  + D  ++ + V +N +++ LCK  + D A     
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            M+  G  P+ S Y  L+ G    G    A+EL   + S G +R
Sbjct: 591 YMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALR 634



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 128/291 (43%), Gaps = 46/291 (15%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
            YN ++  +C+ G+++    +   +      P+A TF  +++GLC   RI +A  +  ++
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDG 172
              GC P    Y  ++   CR+G    ++ + E M A G       C  D    + + + 
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG-------CTLDTGNCNLVLNA 190

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           +C++G VD+A  L  K+                               F      G + +
Sbjct: 191 ICEQGCVDEAVGLLRKLA-----------------------------FF------GCEAD 215

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           +V++N ++  LC   +  +   L++ M+++   P+   +NTL+   C  G   R  E+  
Sbjct: 216 IVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLA 275

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M  +GC  D+  Y  +I+G CK   +E A  + + M S G++P VV YNT
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 127/309 (41%), Gaps = 58/309 (18%)

Query: 92  SLIKGLCAESRI------------MEAAALFTKLRAFGCK-----------------PDV 122
           +LI+ LC+  R                   +  + A  C+                 P+ 
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGDAAGVVAYNAMVAGYCRAGQLAAARRLAAAVPVPPNA 111

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM------------------ANGNGEF--------- 155
           +T+  ++ GLC  G    AL + +EM                  A  +G F         
Sbjct: 112 YTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEA 171

Query: 156 --GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                C  D    + + + +C++G VD+A  L  K+       D+V+Y ++++G C A  
Sbjct: 172 MHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKR 231

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           W + + L  EM+     PN+VTFN ++  LC+NG  +    +L  M + G  PD  +Y T
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++DG C  G +  A E+   M S G   +V  Y  ++ G C  +  + A  L SEM  K 
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 334 IRPTVVTYN 342
                VT+N
Sbjct: 352 CPLDDVTFN 360


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 165/327 (50%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + S+N +   L   K +  V  L   +  +   P++ T+N LI   C+ G       VL 
Sbjct: 216 IVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLA 275

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++     TPD   + ++I G+C E  +  A  +  ++ ++G KP+V  Y T++ GLC   
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L  EM      F   C  D +T++ + D  C+ G VD+  EL  +M      P
Sbjct: 336 RWKEAEELLSEM------FQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMP 389

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DV+TYT++I GFC     +EA  L   M   G +PN V++ +++  LC  G+  +A  L+
Sbjct: 390 DVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELM 449

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             MIQ G  P+   +NTL++  C  G V +A EL   M  NGC  D+ SY  +I+G  K 
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 509

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + E AL L + M++KGI P  + Y++
Sbjct: 510 GKTEEALELLNVMVNKGISPNTIIYSS 536



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 172/341 (50%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R+  +P  + +FN L G L +N  ++ V  +  +++  G  PD+  Y  +I+  
Sbjct: 238 LMDEMVRVDCAPN-IVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     +L R+      P+ V + +++KGLC+  R  EA  L +++    C  D 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  L++  C+ G     + L E+M +        C PD ITY+T+ +G CKEG +D+A
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHG------CMPDVITYTTVINGFCKEGLIDEA 410

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M      P+ V+YT +++G C A  W +A+ L  +M+ QG  PN VTFN ++N 
Sbjct: 411 VMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINF 470

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +++A  LL+ M+  G  PD   Y+T++DG    G+   A EL   M + G   +
Sbjct: 471 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              Y  +     +   +   + ++  +    IR   V YN 
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 172/335 (51%), Gaps = 15/335 (4%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P PP    ++++     ++  +   + + + +++ G   D    N+++N  C+ G V   
Sbjct: 144 PIPP---MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +L ++       D V++ +++KGLC   R  +   L  ++    C P++ T+ TLI  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 132 LCRTGHTIVALNLFE---EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           LCR G       LFE   E+     E G  C PD   Y+TI DG+CKEG ++ A E+  +
Sbjct: 261 LCRNG-------LFERVHEVLAQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M    + P+VV Y ++++G C A  W EA+ L  EM  +    + VTFN++++  C+NG 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +D    LLE M+  G  PD   Y T+++GFC  G ++ A  L  SM S GC  +  SY I
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ G C       A  L S+M+ +G  P  VT+NT
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 148/284 (52%), Gaps = 8/284 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FNIL     +N   D V+ L +++ S G  PD+ TY  +IN FCK G +    ++L  +
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ V++T ++KGLC+  R ++A  L +++   GC P+  T+ TLIN LC+ G  
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A+ L ++M  NG       C PD I+YST+ DGL K G  ++A EL   M ++ I+P+
Sbjct: 478 EQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + Y+S+          N+   +F  + D  ++ + V +N +++ LCK  + D A     
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            M+  G  P+ S Y  L+ G    G    A+EL   + S G +R
Sbjct: 591 YMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALR 634



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 129/293 (44%), Gaps = 46/293 (15%)

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
           +  YN ++  +C+ G+++    +   +      P+A TF  +++GLC   RI +A  +  
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTIT 170
           ++   GC P    Y  ++   CR+G    ++ + E M A G       C  D    + + 
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG-------CTLDTGNCNLVL 188

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           + +C++G VD+A  L  K+                               F      G +
Sbjct: 189 NAICEQGCVDEAVGLLRKLA-----------------------------FF------GCE 213

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            ++V++N ++  LC   +  +   L++ M+++   P+   +NTL+   C  G   R  E+
Sbjct: 214 ADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEV 273

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M  +GC  D+  Y  +I+G CK   +E A  + + M S G++P VV YNT
Sbjct: 274 LAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 127/309 (41%), Gaps = 58/309 (18%)

Query: 92  SLIKGLCAESRI------------MEAAALFTKLRAFGCK-----------------PDV 122
           +LI+ LC+  R                   +  + A  C+                 P+ 
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGDAAGVVAYNAMVAGYCRAGQLAAARRLAAAVPVPPNA 111

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM------------------ANGNGEF--------- 155
           +T+  ++ GLC  G    AL + +EM                  A  +G F         
Sbjct: 112 YTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEA 171

Query: 156 --GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                C  D    + + + +C++G VD+A  L  K+       D+V+Y ++++G C A  
Sbjct: 172 MHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKR 231

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           W + + L  EM+     PN+VTFN ++  LC+NG  +    +L  M + G  PD  +Y T
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++DG C  G +  A E+   M S G   +V  Y  ++ G C  +  + A  L SEM  K 
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 334 IRPTVVTYN 342
                VT+N
Sbjct: 352 CPLDDVTFN 360


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 165/327 (50%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + S+N +   L   K +  V  L   +  +   P++ T+N LI   C+ G       VL 
Sbjct: 216 IVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLA 275

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++     TPD   + ++I G+C E  +  A  +  ++ ++G KP+V  Y T++ GLC   
Sbjct: 276 QMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L  EM      F   C  D +T++ + D  C+ G VD+  EL  +M      P
Sbjct: 336 RWKEAEELLSEM------FQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMP 389

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DV+TYT++I GFC     +EA  L   M   G +PN V++ +++  LC  G+  +A  L+
Sbjct: 390 DVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELM 449

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             MIQ G  P+   +NTL++  C  G V +A EL   M  NGC  D+ SY  +I+G  K 
Sbjct: 450 SQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKA 509

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + E AL L + M++KGI P  + Y++
Sbjct: 510 GKTEEALELLNVMVNKGISPNTIIYSS 536



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 172/341 (50%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R+  +P  + +FN L G L +N  ++ V  +  +++  G  PD+  Y  +I+  
Sbjct: 238 LMDEMVRVDCAPN-IVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +     +L R+      P+ V + +++KGLC+  R  EA  L +++    C  D 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+  L++  C+ G     + L E+M +        C PD ITY+T+ +G CKEG +D+A
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHG------CMPDVITYTTVINGFCKEGLIDEA 410

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M      P+ V+YT +++G C A  W +A+ L  +M+ QG  PN VTFN ++N 
Sbjct: 411 VMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINF 470

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G +++A  LL+ M+  G  PD   Y+T++DG    G+   A EL   M + G   +
Sbjct: 471 LCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              Y  +     +   +   + ++  +    IR   V YN 
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 172/335 (51%), Gaps = 15/335 (4%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P PP    ++++     ++  +   + + + +++ G   D    N+++N  C+ G V   
Sbjct: 144 PIPP---MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +L ++       D V++ +++KGLC   R  +   L  ++    C P++ T+ TLI  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 132 LCRTGHTIVALNLFE---EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           LCR G       LFE   E+     E G  C PD   Y+TI DG+CKEG ++ A E+  +
Sbjct: 261 LCRNG-------LFERVHEVLAQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M    + P+VV Y ++++G C A  W EA+ L  EM  +    + VTFN++++  C+NG 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +D    LLE M+  G  PD   Y T+++GFC  G ++ A  L  SM S GC  +  SY I
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ G C       A  L S+M+ +G  P  VT+NT
Sbjct: 432 VLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 148/284 (52%), Gaps = 8/284 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FNIL     +N   D V+ L +++ S G  PD+ TY  +IN FCK G +    ++L  +
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ V++T ++KGLC+  R ++A  L +++   GC P+  T+ TLIN LC+ G  
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A+ L ++M  NG       C PD I+YST+ DGL K G  ++A EL   M ++ I+P+
Sbjct: 478 EQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + Y+S+          N+   +F  + D  ++ + V +N +++ LCK  + D A     
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            M+  G  P+ S Y  L+ G    G    A+EL   + S G +R
Sbjct: 591 YMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALR 634



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 129/293 (44%), Gaps = 46/293 (15%)

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
           +  YN ++  +C+ G+++    +   +      P+A TF  +++GLC   RI +A  +  
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTIT 170
           ++   GC P    Y  ++   CR+G    ++ + E M A G       C  D    + + 
Sbjct: 136 EMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG-------CTLDTGNCNLVL 188

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           + +C++G VD+A  L  K+                               F      G +
Sbjct: 189 NAICEQGCVDEAVGLLRKLA-----------------------------FF------GCE 213

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            ++V++N ++  LC   +  +   L++ M+++   P+   +NTL+   C  G   R  E+
Sbjct: 214 ADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEV 273

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M  +GC  D+  Y  +I+G CK   +E A  + + M S G++P VV YNT
Sbjct: 274 LAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 127/309 (41%), Gaps = 58/309 (18%)

Query: 92  SLIKGLCAESRI------------MEAAALFTKLRAFGCK-----------------PDV 122
           +LI+ LC+  R                   +  + A  C+                 P+ 
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGDAAGVVAYNAMVAGYCRAGQLAAARRLAAAVPVPPNA 111

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEM------------------ANGNGEF--------- 155
           +T+  ++ GLC  G    AL + +EM                  A  +G F         
Sbjct: 112 YTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEA 171

Query: 156 --GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                C  D    + + + +C++G VD+A  L  K+       D+V+Y ++++G C A  
Sbjct: 172 MHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKR 231

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           W + + L  EM+     PN+VTFN ++  LC+NG  +    +L  M + G  PD  +Y T
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++DG C  G +  A E+   M S G   +V  Y  ++ G C  +  + A  L SEM  K 
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 334 IRPTVVTYN 342
                VT+N
Sbjct: 352 CPLDDVTFN 360


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 182/358 (50%), Gaps = 31/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FNI+   L K         + K +   GL P + TYN LI+ + K GR    + V
Sbjct: 186 PDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHV 245

Query: 75  ---LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
              L  + ++  +P+ VTF  LI G C ES I  A  +F ++R  G   ++ TYT+L++G
Sbjct: 246 DMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSG 305

Query: 132 LCRTGHTIVALNLFEEMA--------------NGNGEFGVVC--------------KPDA 163
           LCR G    ++ L EEM               NG  + G++               KP+ 
Sbjct: 306 LCREGKVEDSMKLVEEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNV 365

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY+T+ DG  + G + +A      M  + I+PDV TY  LI GF  + DW     L  E
Sbjct: 366 VTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDE 425

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M + GV+ ++VT+NV++  LC  G++ +A +LL+ M+++G+ P    YN +++GFC  G 
Sbjct: 426 MKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGD 485

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              A ++ + ME      +V +  + +  +CK  +++ A  + +EML KG+ P  +TY
Sbjct: 486 AKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITY 543



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 145/296 (48%), Gaps = 10/296 (3%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P  ++ N L+    +  RV          LR   +PD  TF  +I GLC   ++ +A  +
Sbjct: 151 PSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAGDV 210

Query: 110 FTKLRAFGCKPDVFTYTTLING---LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
              +R +G  P V TY TLI+G     R G       L +EM     + G+   P+ +T+
Sbjct: 211 AKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEM----NQAGI--SPNVVTF 264

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + + +G CKE  +  A ++F +M+   I  ++VTYTSL+ G C      ++  L  EM +
Sbjct: 265 NVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEE 324

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G+   + T N ++N  CK G M EA   ++ M Q G++P+   YNTL+DG+   G++  
Sbjct: 325 LGLA-TLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKE 383

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           A     +M   G   DV +Y  LI G+  + +      L  EM   G++  +VTYN
Sbjct: 384 ATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYN 439



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 140/263 (53%), Gaps = 10/263 (3%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           + P A +  +L+  L    R+  A   F         PD FT+  +I+GLC+TG    A 
Sbjct: 149 YRPSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAG 208

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN---INPDVV 199
           ++ ++M      +G++  P  +TY+T+ DG  K G   K   + + +K+ N   I+P+VV
Sbjct: 209 DVAKDMRG----WGLM--PSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVV 262

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T+  LI G+C  ++   A  +F EM   G+  N+VT+  +++ LC+ GK++++ +L+E M
Sbjct: 263 TFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEM 322

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            ++G+       N++++GFC  G +  A+     M   G   +V +Y  LI+GY +  ++
Sbjct: 323 EELGL-ATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKM 381

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
           + A +    M  KGI P V TYN
Sbjct: 382 KEATAAKGAMAGKGISPDVKTYN 404



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 132/282 (46%), Gaps = 8/282 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M R H  P  + ++  L   L +    +  + L + +  +GL   L T N ++N F
Sbjct: 283 VFEEM-RQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGL-ATLPTLNSVLNGF 340

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +      +  + +    P+ VT+ +LI G     ++ EA A    +   G  PDV
Sbjct: 341 CKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDV 400

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LI G   +        L +EM     E GV  K D +TY+ +   LC +G V KA
Sbjct: 401 KTYNCLITGFTTSTDWRSVSGLLDEMK----ETGV--KADLVTYNVLIGALCCKGEVRKA 454

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L  +M +  + P   TY ++I GFC   D   A  + I M     + NVVT NV +  
Sbjct: 455 VKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKY 514

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
            CK GKMDEA+ +L  M++ G+ P+   Y  +  G    G V
Sbjct: 515 FCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYV 556



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 124/277 (44%), Gaps = 34/277 (12%)

Query: 91  TSLIKGLCAESR-------IMEAAALFTKLRAFGC-----------KPDVFTYTTLINGL 132
            S+++ L A SR       ++  A     L A+G            +P  F+   L+  L
Sbjct: 104 ASILRALPASSRPLVADMLVLALARASQPLAAYGAFLLAGADYPRYRPSAFSVNALLAAL 163

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            R     +A   F               PD  T++ +  GLCK G + KA ++   M+  
Sbjct: 164 VRADRVDLAERAFRAALR------RRVSPDKFTFNIVISGLCKTGQLRKAGDVAKDMRGW 217

Query: 193 NINPDVVTYTSLIRGFCYANDWNEA------KCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            + P VVTY +LI G+     W  A        L  EM   G+ PNVVTFNV++N  CK 
Sbjct: 218 GLMPSVVTYNTLIDGYY---KWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLINGYCKE 274

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
             +  A ++ E M Q G+  +   Y +L+ G C  G+V  + +L   ME  G +  + + 
Sbjct: 275 SNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELG-LATLPTL 333

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++NG+CK   +  A      M  KG++P VVTYNT
Sbjct: 334 NSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNT 370


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + + +   L + + +   L LF  + S GL PD+Y Y  ++   C++        V
Sbjct: 178 PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREV 237

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +GR+  S       T+   I+GLC   R+ EA  +   L   G + DV TY TL+ GLC+
Sbjct: 238 IGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCK 297

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               +      EEM N   EFG V  P     S + DGL K+G +  A +L  K+K   +
Sbjct: 298 ----VEEFEAGEEMMNEMIEFGFV--PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGV 351

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +  Y +LI   C     +EA+ LF  M  +G+ PN VT++++++  CK GK+D A  
Sbjct: 352 APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALH 411

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  M ++G++     Y++L+ G C  G++  AK LF  M +NG   +V  Y  LI+GYC
Sbjct: 412 FLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYC 471

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K  E+  A  LY EM  KGI P   T+
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTF 498



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 172/348 (49%), Gaps = 48/348 (13%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           SLF  + + GL P++  Y  LI+ +CK G +   F +   +     +P+  TFT+LI GL
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGL 505

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C  +R+ EA  LF ++  +   P+  TY  LI G C+ G+T+ A  L +EM     E G+
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMV----EKGL 561

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELF--LKMKDENIN------PDVVTYTSLIRGFC 209
           V  PD  TY  +  GLC  G V +A+E    L+ + + +N      P+VVTYT+LI G C
Sbjct: 562 V--PDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLC 619

Query: 210 YANDWNEAKCLFIEMMD----------------------------------QGVQPNVVT 235
                ++A+ L  EM+                                   +G   N VT
Sbjct: 620 KIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVT 679

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N+++   CK G++ EA+ +L  MI  G+ PD   Y+T++  +C  G +  A +L+ SM 
Sbjct: 680 YNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESML 739

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + G   D  +Y  LI G C   E+  A  L  +M+ +G++P   TYN+
Sbjct: 740 NRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNS 787



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 156/325 (48%), Gaps = 6/325 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+    L KN+     + +   L+  GL  D+ TY  L+   CK+     G  ++ 
Sbjct: 250 VATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMN 309

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++   F P     ++L+ GL  +  I  A  L  K++ FG  P +F Y  LIN +C+ G
Sbjct: 310 EMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDG 369

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A +LF  M +  G F     P+ +TYS + D  CK G +D A     KM +  I  
Sbjct: 370 KLDEAESLFNNMGH-KGLF-----PNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKA 423

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            V  Y+SLI G C       AK LF EM+  G++PNVV +  +++  CK G++  A RL 
Sbjct: 424 TVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLY 483

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M   G+ P+   +  L+ G C   R+  A +LF  M     + +  +Y +LI G+CK 
Sbjct: 484 HEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKE 543

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
                A  L  EM+ KG+ P   TY
Sbjct: 544 GNTVRAFELLDEMVEKGLVPDTYTY 568



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 149/321 (46%), Gaps = 15/321 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L   L           LF  +    + P+  TYN+LI   CK G     F +
Sbjct: 493 PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFEL 552

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--------GCKPDVFTYT 126
           L  ++     PD  T+  LI GLC+  R+ EA      L+          GC P+V TYT
Sbjct: 553 LDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYT 612

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+ G    A  L  EM   N        P+  TY+   D L  EG ++KA +L 
Sbjct: 613 ALINGLCKIGLMDKAELLCREMLASNS------LPNQNTYACFLDYLTSEGNIEKAIQLH 666

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             +  E    + VTY  LIRGFC      EA  + + M+D G+ P+ ++++ I+ E C+ 
Sbjct: 667 -DVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRR 725

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G + EA +L E M+  GV PD   YN L+ G C+TG + +A EL   M   G   +  +Y
Sbjct: 726 GDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATY 785

Query: 307 GILINGYCKNKEIEGALSLYS 327
             LI+G C    +      +S
Sbjct: 786 NSLIHGTCLMSSVSSTADYFS 806



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 6/263 (2%)

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R C     + F  LI+      R ++   +   +   G  P + T + ++NGL R     
Sbjct: 138 RKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFR 197

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
           +AL+LF+E+ +         +PD   Y+ +   LC+     +A+E+  +M+    +  V 
Sbjct: 198 MALHLFDEIVSSG------LRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVA 251

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY   IRG C      EA  +   +  +G++ +V T+  ++  LCK  + +    ++  M
Sbjct: 252 TYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEM 311

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           I+ G  P  +  + L+DG    G +  A +L   ++  G    +F Y  LIN  CK+ ++
Sbjct: 312 IEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKL 371

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
           + A SL++ M  KG+ P  VTY+
Sbjct: 372 DEAESLFNNMGHKGLFPNDVTYS 394


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 171/327 (52%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L K         + + +   G  P++YT+  LI+  CK G     F +
Sbjct: 308 PNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRL 367

Query: 75  LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
             +++RS  + P+  T+TS+I G C E ++  A  LF++++  G  P+V TYTTLING C
Sbjct: 368 FLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHC 427

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+   A  L   M +         +P+  TY+ + D LCK+    +A EL  K     
Sbjct: 428 KAGNFDRAYELMNLMDDEG------FRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCG 481

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  D VTYT LI+  C  +D  +A   F  M   G + ++   N+++   C+  KM E+ 
Sbjct: 482 LEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESE 541

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RL +L++ +G+ P    Y +++ G+C  G  + A + F +M+ +GC+ D F+YG LI+G 
Sbjct: 542 RLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGL 601

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
           CK   ++ A  LY  M+ +G+ P  VT
Sbjct: 602 CKKSMVDEACKLYEAMIDRGLSPPEVT 628



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 177/333 (53%), Gaps = 13/333 (3%)

Query: 15  PPVCSFNIL-FGCL--AKNKHYDTVLS-LFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           P   SF ++  GC    K +  D  LS + +R    G  PD  T  ++++  C+ G V+ 
Sbjct: 238 PDSSSFKLMVIGCFRDGKIQEADRWLSGMIQR----GFIPDNATCTLILSALCENGLVNR 293

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
                 +++   F P+ + FTSLI GLC +  I +A  +  ++   G KP+V+T+T LI+
Sbjct: 294 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 353

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLC+ G T  A  LF ++   +     + KP+  TY+++  G CKE  +++A+ LF +MK
Sbjct: 354 GLCKRGWTEKAFRLFLKLVRSD-----IYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMK 408

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           ++ + P+V TYT+LI G C A +++ A  L   M D+G +PN+ T+N +++ LCK  +  
Sbjct: 409 EQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAP 468

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA  LL      G+  D   Y  L+   C    + +A   F  M   G   D+    ILI
Sbjct: 469 EAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILI 528

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +C+ K+++ +  L+  ++S G+ PT  TY +
Sbjct: 529 AAFCRQKKMKESERLFQLVVSLGLVPTKETYTS 561



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 165/321 (51%), Gaps = 9/321 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNIL-INCFCKMGRVSPGFV 73
           P   + N +     ++   D   ++F  ++  G+ PD  ++ ++ I CF + G++     
Sbjct: 203 PSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCF-RDGKIQEADR 261

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
            L  +++  F PD  T T ++  LC    +  A   F K+   G KP++  +T+LI+GLC
Sbjct: 262 WLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLC 321

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A  + EEM   NG      KP+  T++ + DGLCK G+ +KA  LFLK+   +
Sbjct: 322 KKGSIKQAFEMLEEMVR-NG-----WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD 375

Query: 194 I-NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           I  P+V TYTS+I G+C  +  N A+ LF  M +QG+ PNV T+  ++N  CK G  D A
Sbjct: 376 IYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRA 435

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L+ LM   G RP+   YN ++D  C   R   A EL     S G   D  +Y ILI  
Sbjct: 436 YELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQE 495

Query: 313 YCKNKEIEGALSLYSEMLSKG 333
            CK  +I+ AL+ +  M   G
Sbjct: 496 QCKQSDIKQALAFFCRMNKTG 516



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 148/340 (43%), Gaps = 9/340 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ++R     P V ++  + G   K    +    LF R+   GLFP++ TY  LIN
Sbjct: 365 FRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 424

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G     + ++  +    F P+  T+ ++I  LC +SR  EA  L  K  + G + 
Sbjct: 425 GHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEA 484

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT LI   C+      AL  F  M     E       D    + +    C++  + 
Sbjct: 485 DGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFE------ADMRLNNILIAAFCRQKKMK 538

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +++ LF  +    + P   TYTS+I G+C   D++ A   F  M   G  P+  T+  ++
Sbjct: 539 ESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLI 598

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK   +DEA +L E MI  G+ P      TL   +C       A  +   ++    +
Sbjct: 599 SGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSASAMIVLEPLDKKLWI 658

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           R V +   L+   C  K++  A   + ++L K      VT
Sbjct: 659 RTVRT---LVRKLCSEKKVGVAALFFQKLLEKDSSADRVT 695



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 21/306 (6%)

Query: 56  NILINCFCKMGRV--SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA------A 107
           +++ N + +   V  SP  V L     S     A+T   ++  L +ES  M A      A
Sbjct: 84  SLVYNSYLRQNHVIQSPHRVNLDFDANSLTHEQAIT---VVASLASESGSMVALCFFYWA 140

Query: 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA--LNLFEEMANGNGEFGVV------- 158
             F K R F     V   + + NG  +  H ++   L  F E+   N   G+V       
Sbjct: 141 VGFEKFRHFMRLYLVTADSLIANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQG 200

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
             P +IT + + +   + G +D A+ +F +M    + PD  ++  ++ G        EA 
Sbjct: 201 LSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEAD 260

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
                M+ +G  P+  T  +I++ LC+NG ++ A      MI +G +P+   + +L+DG 
Sbjct: 261 RWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGL 320

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI-RPT 337
           C  G + +A E+   M  NG   +V+++  LI+G CK    E A  L+ +++   I +P 
Sbjct: 321 CKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPN 380

Query: 338 VVTYNT 343
           V TY +
Sbjct: 381 VHTYTS 386


>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
          Length = 649

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 15/327 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F++L   L +N   D+ + + +++   G  PD   YNI+IN   + GRV     +
Sbjct: 325 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PDA+ F +++KG C   R  +A+ L  ++    C     T+  LI+ LC+
Sbjct: 385 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQ 441

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +FE+M          C PD +TYS++ +G  ++G V+ A +LF  M     
Sbjct: 442 NGLVNYATQVFEQMPR------YRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMP---C 492

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ +Y ++++G C A  W +A  L  EM+ +   PN VTFN+++N LC+ G +D A  
Sbjct: 493 KPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIE 552

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +LE M   G  PD   YN L++GF   GR++ A +L  +M    C  D  SY   + G C
Sbjct: 553 VLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM---SCKPDAISYNSTLKGLC 609

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +  + A  L +EML     P  VT+
Sbjct: 610 RAERWQDAEELVAEMLRNKCTPNEVTF 636



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 160/327 (48%), Gaps = 15/327 (4%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++  L     ++   D  L L   + S+ + PD YTYN ++   C   +      ++ 
Sbjct: 158 VVTYTALIDGYCRSGRLDDALRL---IASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMA 214

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++R+   P+ VTF + I+  C    +  A  L  ++  +GC PDV  Y+TLING    G
Sbjct: 215 EMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQG 274

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           H   AL+L   M         +CKP+ + Y+    GLC     +   EL  +M  +  +P
Sbjct: 275 HVDQALDLLNTM---------LCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSP 325

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +  T++ LI   C  N  + A  +  +M   G +P+ V +N+I+N L + G++D+A RLL
Sbjct: 326 NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLL 385

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M+    +PDA  +N ++ GFC   R + A EL   M  + C     ++ ILI+  C+N
Sbjct: 386 NSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQN 442

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  A  ++ +M      P +VTY++
Sbjct: 443 GLVNYATQVFEQMPRYRCTPDIVTYSS 469



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 167/365 (45%), Gaps = 50/365 (13%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +F        +N   D  + L  ++   G  PD+  Y+ LIN F + G V     
Sbjct: 222 PPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALD 281

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +L     P+ V + + +KGLC   R  +   L  ++   GC P+  T++ LI+ LC
Sbjct: 282 LLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLC 338

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A+ + E+M     ++G  C+PD + Y+ I + L + G VD A  L   M    
Sbjct: 339 QNNLVDSAVEVLEQME----KYG--CEPDTVNYNIIINSLSERGRVDDALRLLNSMV--- 389

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD + + ++++GFC A  W++A  L  +M         +TFN++++ LC+NG ++ A+
Sbjct: 390 CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYAT 449

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG------ 307
           ++ E M +    PD   Y++L++GF   G V  A +LF SM    C  D+FSY       
Sbjct: 450 QVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMP---CKPDIFSYNAVLKGL 506

Query: 308 -----------------------------ILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
                                        ILIN  C+   ++ A+ +  +M + G  P +
Sbjct: 507 CRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDI 566

Query: 339 VTYNT 343
            TYN 
Sbjct: 567 FTYNA 571



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 145/292 (49%), Gaps = 15/292 (5%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           ++ TY  LI+ +C+ GR+     ++  +      PD  T+ +++KGLC   +  EA  L 
Sbjct: 157 NVVTYTALIDGYCRSGRLDDALRLIASMP---VAPDTYTYNTVLKGLCIAKKWEEAEELM 213

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++    C P+  T+ T I   C+ G    A+ L ++M      +G  C PD + YST+ 
Sbjct: 214 AEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMP----RYG--CTPDVVIYSTLI 267

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +G  ++G VD+A +L   M      P+ V Y + ++G C A  W +   L  EM+ +G  
Sbjct: 268 NGFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCS 324

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN  TF+++++ LC+N  +D A  +LE M + G  PD   YN +++     GRV+ A  L
Sbjct: 325 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             SM    C  D   +  ++ G+C+ +    A  L ++M         +T+N
Sbjct: 385 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFN 433



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 14/250 (5%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LIK LCA  R+ +A  +   L+A      V ++ TL+ G CR G    A  +    A   
Sbjct: 96  LIKKLCATGRLADAERVLDALKAAAAADAV-SHNTLVAGYCRDGRLADAERVLG-AARAT 153

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
           G   VV      TY+ + DG C+ G +D A  L   M    + PD  TY ++++G C A 
Sbjct: 154 GAANVV------TYTALIDGYCRSGRLDDALRLIASMP---VAPDTYTYNTVLKGLCIAK 204

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W EA+ L  EM+     PN VTF   +   C+NG +D A +LL+ M + G  PD  +Y+
Sbjct: 205 KWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYS 264

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           TL++GF   G V++A +L  +M    C  +   Y   + G C  +  E    L +EM+ K
Sbjct: 265 TLINGFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRK 321

Query: 333 GIRPTVVTYN 342
           G  P   T++
Sbjct: 322 GCSPNEATFS 331



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R  P  P + S+N +   L +   ++    L   +      P+  T+NILIN  C+ G
Sbjct: 486 LFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKG 545

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V     VL ++     TPD  T+ +LI G   + R+ +A  L + +    CKPD  +Y 
Sbjct: 546 LVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM---SCKPDAISYN 602

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
           + + GLCR      A  L  EM          C P+ +T+
Sbjct: 603 STLKGLCRAERWQDAEELVAEMLRNK------CTPNEVTF 636


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 162/325 (49%), Gaps = 7/325 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD MLR     P V +FN L   + K    +   +L   +   G+ PD+YTY   I   
Sbjct: 264 VFDEMLR-RGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGL 322

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GR+     +   +      P+ V  T+LI   C E  +     L  ++   G K D+
Sbjct: 323 CKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADL 382

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  L+NG CR      A ++ EEM           KPD +TY+T+ DG CKEG +D A
Sbjct: 383 VAYNALVNGFCRVRDMKAANDIVEEMRKDG------LKPDKVTYTTLIDGCCKEGELDTA 436

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+  +M DE +  D VTYT+LI G   A    +A+ +  EMM+ G+QP+  T+ ++++ 
Sbjct: 437 MEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDA 496

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CKNG +    + L+ M   G  P    YN +M+GFC  G++  A  L  +M + G   +
Sbjct: 497 FCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPN 556

Query: 303 VFSYGILINGYCKNKEIEGALSLYS 327
             +Y IL++G+CK+ ++     L S
Sbjct: 557 DITYNILLDGHCKHGKVRDTEELKS 581



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 153/305 (50%), Gaps = 6/305 (1%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           + +  L   G+ P+   +N+L+    + G+++    V   +LR    P  VTF +L+ G+
Sbjct: 228 AFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGM 287

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C  S +  A AL   +   G  PDV+TY   I GLC+TG    A+ +FEEM     E G+
Sbjct: 288 CKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMC----ERGL 343

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              P+ +  +T+ D  CKEG V    EL  +M    +  D+V Y +L+ GFC   D   A
Sbjct: 344 --NPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAA 401

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +  EM   G++P+ VT+  +++  CK G++D A  + + M   GV  D   Y  L+ G
Sbjct: 402 NDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISG 461

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
               GR   A+ +   M   G   D  +Y ++I+ +CKN +++       EM +KG  P 
Sbjct: 462 LSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPG 521

Query: 338 VVTYN 342
           +VTYN
Sbjct: 522 IVTYN 526



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 173/329 (52%), Gaps = 6/329 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP    FN+L   + ++    +  ++F  +   G+ P + T+N L++  CK   ++    
Sbjct: 239 PPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANA 298

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + G + ++   PD  T+ + I+GLC   RI +A  +F ++   G  P+    TTLI+  C
Sbjct: 299 LRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHC 358

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G     L L  EMA      GV  K D + Y+ + +G C+   +  A ++  +M+ + 
Sbjct: 359 KEGDVTAGLELRWEMAT----RGV--KADLVAYNALVNGFCRVRDMKAANDIVEEMRKDG 412

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTYT+LI G C   + + A  +  EM D+GV  + VT+  +++ L K G+  +A 
Sbjct: 413 LKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAE 472

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R+L  M++ G++PD + Y  ++D FC  G V    +    M++ G    + +Y +++NG+
Sbjct: 473 RILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGF 532

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           C   +++ A  L + ML+ G+ P  +TYN
Sbjct: 533 CSLGQMKNADMLLNAMLNIGVCPNDITYN 561



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 6/239 (2%)

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + EA A +  L   G  P+   +  L+  + R+G    A N+F+EM       GV  +P 
Sbjct: 223 VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEML----RRGV--QPT 276

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
            +T++T+  G+CK   ++ A  L   M    I PDV TY + I+G C      +A  +F 
Sbjct: 277 VVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFE 336

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM ++G+ PN V    +++  CK G +     L   M   GV+ D   YN L++GFC   
Sbjct: 337 EMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVR 396

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +  A ++   M  +G   D  +Y  LI+G CK  E++ A+ +  EM  +G+    VTY
Sbjct: 397 DMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTY 455



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 98/183 (53%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P+A  ++ +   + + G +  A+ +F +M    + P VVT+ +L+ G C A+D N A  L
Sbjct: 240 PEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANAL 299

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
              M   G+ P+V T+   +  LCK G++ +A  + E M + G+ P+  V  TL+D  C 
Sbjct: 300 RGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCK 359

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G V    EL   M + G   D+ +Y  L+NG+C+ ++++ A  +  EM   G++P  VT
Sbjct: 360 EGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVT 419

Query: 341 YNT 343
           Y T
Sbjct: 420 YTT 422



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           V +A   +L + D  + P+   +  L+R    +     A+ +F EM+ +GVQP VVTFN 
Sbjct: 223 VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 282

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +M+ +CK   ++ A+ L  LM + G+ PD   Y   + G C TGR+  A E+F  M   G
Sbjct: 283 LMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERG 342

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +      LI+ +CK  ++   L L  EM ++G++  +V YN 
Sbjct: 343 LNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNA 387



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G + +   LL L ++ G+R     ++ LM+       V  A   ++ +   G   +   +
Sbjct: 189 GLLPDGCSLLLLALRRGIRVPMPAWSDLMNRLP---SVPEAYAFYLHLLDAGVPPEARQF 245

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L+    ++ ++  A +++ EML +G++PTVVT+NT
Sbjct: 246 NMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 282


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 168/330 (50%), Gaps = 6/330 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +FN L G L +N  ++ V  +  ++   G  PD+  Y  +++  CK G +     
Sbjct: 257 PPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHE 316

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R+      P+ V + +++KGLC+  R  +A  L  ++    C  D  T+  L++  C
Sbjct: 317 ILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFC 376

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G     + L E+M     E G  C PD ITY+T+ +G CKEG +D+A  L   M    
Sbjct: 377 QNGLVYRVIELLEQML----EHG--CVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACG 430

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+ ++YT +++G C A  W +A+ L  +M++QG  PN VTFN ++N LCK G +++A 
Sbjct: 431 CRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAI 490

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL+ M+  G  PD   Y+T++DG    G+ + A EL   M + G   +   Y  + +  
Sbjct: 491 ELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASAL 550

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K   I   + ++  +    IR   V YN 
Sbjct: 551 SKEGRINRVIQMFDNIQDVTIRSDAVLYNA 580



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 174/345 (50%), Gaps = 10/345 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKH--YDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + D M R   +P P     IL    ++     + + + + + L+  G   D+   N+++N
Sbjct: 137 VLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLN 196

Query: 61  CFCKMGRVSPGFVVLGRILRSCF--TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
             C  G      + L R L + F   PD V++ +++KGLC   R      L  ++   GC
Sbjct: 197 AVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGC 256

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+V T+ TLI  LCR G       +  +M +        C PD   Y+T+ DG+CKEG 
Sbjct: 257 PPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHG------CTPDIRMYATVLDGVCKEGH 310

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           ++ A E+  +M    + P+VV Y ++++G C A  W +A+ L  EM D     + VTFN+
Sbjct: 311 LEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNI 370

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++  C+NG +     LLE M++ G  PD   Y T+++GFC  G ++ A  L  SM + G
Sbjct: 371 LVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACG 430

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C  +  SY I++ G C  +    A  L S+M+ +G  P  VT+NT
Sbjct: 431 CRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNT 475



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N +   L   K +  V  L + +  +G  P++ T+N LI   C+ G       V
Sbjct: 223 PDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQV 282

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++    TPD   + +++ G+C E  +  A  +  ++ ++G KP+V  Y T++ GLC 
Sbjct: 283 LAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCS 342

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L  EM + +      C  D +T++ + D  C+ G V +  EL  +M +   
Sbjct: 343 AERWEQAEELLAEMFDND------CPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGC 396

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+TYT++I GFC     +EA  L   M   G +PN +++ +++  LC   +  +A  
Sbjct: 397 VPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAED 456

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  MI+ G  P+   +NT+++  C  G V +A EL   M  NGC  D+ SY  +I+G  
Sbjct: 457 LMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLG 516

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  + + AL L + M++KG+ P  + Y++
Sbjct: 517 KAGKTDEALELLNVMVNKGMSPNTIIYSS 545



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 172/331 (51%), Gaps = 7/331 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I D M      P  VC +N +   L   + ++    L   +       D  T+NIL++ F
Sbjct: 317 ILDRMPSYGLKPNVVC-YNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFF 375

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G V     +L ++L     PD +T+T++I G C E  I EA  L   + A GC+P+ 
Sbjct: 376 CQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNT 435

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +YT ++ GLC     + A +L  +M          C P+ +T++T+ + LCK+G V++A
Sbjct: 436 ISYTIVLKGLCSAERWVDAEDLMSQMIEQG------CSPNPVTFNTVINFLCKKGLVEQA 489

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL  +M     +PD+++Y+++I G   A   +EA  L   M+++G+ PN + ++ I + 
Sbjct: 490 IELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASA 549

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L K G+++   ++ + +  + +R DA +YN ++   C  G  +RA E    M S+GCM +
Sbjct: 550 LSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPN 609

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
             +Y ILI G      ++ A  + +E+ SKG
Sbjct: 610 ESTYTILIRGLASEGFVKEAQEMLTELCSKG 640



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 152/294 (51%), Gaps = 10/294 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FNIL     +N     V+ L +++   G  PD+ TY  +IN FCK G +    ++L  +
Sbjct: 367 TFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSM 426

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ +++T ++KGLC+  R ++A  L +++   GC P+  T+ T+IN LC+ G  
Sbjct: 427 AACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLV 486

Query: 139 IVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A+ L ++M  NG       C PD I+YST+ DGL K G  D+A EL   M ++ ++P+
Sbjct: 487 EQAIELLKQMLLNG-------CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 539

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + Y+S+          N    +F  + D  ++ + V +N +++ LCK G  D A   L 
Sbjct: 540 TIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLA 599

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF--SYGIL 309
            M+  G  P+ S Y  L+ G    G V  A+E+   + S G +R  F   +GI+
Sbjct: 600 YMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCSKGALRKHFMKHFGIV 653



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 14/293 (4%)

Query: 55  YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR 114
           YN +++ +C+ G+++    +   +      P+A T+  +++ LCA  RI +A ++  ++R
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVP---VPPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIV---ALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
             GC P    Y  ++   C  G       A+ + +++ +G G     C  D    + + +
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDL-HGRG-----CALDVGNCNLVLN 196

Query: 172 GLCKE-GFVDKAKELFLKMKDE-NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +C + G VD+A  L   +      +PDVV+Y ++++G C A  W   + L  EM+  G 
Sbjct: 197 AVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGC 256

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PNVVTFN ++  LC+NG  +   ++L  M+  G  PD  +Y T++DG C  G +  A E
Sbjct: 257 PPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHE 316

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +   M S G   +V  Y  ++ G C  +  E A  L +EM         VT+N
Sbjct: 317 ILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFN 369


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 169/331 (51%), Gaps = 11/331 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +F ++   L      D+ LS+ + +   G  P+   Y  LI+   K  RV+    
Sbjct: 208 PPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQ 267

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      PDA TF  +I GLC   RI EAA +  ++   G  PD  TY  L+NGLC
Sbjct: 268 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLC 327

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDE 192
           + G    A +LF  +           KP ++ ++T+  G    G +D AK +   M    
Sbjct: 328 KIGRVDAAKDLFYRIP----------KPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSY 377

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            I PDV TY SLI G+        A  +  +M ++G +PNV ++ ++++  CK GK+DEA
Sbjct: 378 GIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 437

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             LL  M   G++P+   +N L+  FC   R+  A E+F  M   GC  DV+++  LI+G
Sbjct: 438 YNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 497

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            C+  EI+ AL L  +M+S+G+    VTYNT
Sbjct: 498 LCEVDEIKHALWLLRDMISEGVVANTVTYNT 528



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 177/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P VC++N L     K       L + + + + G  P++Y+Y IL++ FCK+G++   + +
Sbjct: 381 PDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNL 440

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ V F  LI   C E RI EA  +F ++   GCKPDV+T+ +LI+GLC 
Sbjct: 441 LNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 500

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L  +M +     GVV   + +TY+T+ +   + G + +A++L  +M  +  
Sbjct: 501 VDEIKHALWLLRDMISE----GVVA--NTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 554

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY SLI+G C A + ++A+ LF +M+  G+ P+ ++ N+++N LC++G ++EA  
Sbjct: 555 LLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVE 614

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + M+  G  PD   +N+L++G C  GR+     +F  +++ G   D  +Y  L++  C
Sbjct: 615 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLC 674

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +  A  L  E +  G  P   T++
Sbjct: 675 KGGFVYDACLLLDEGIEDGFVPNDRTWS 702



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 176/362 (48%), Gaps = 40/362 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP---- 70
           P   +FN +   L K    +    +  R+   G  PD  TY  L+N  CK+GRV      
Sbjct: 279 PDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDL 338

Query: 71  -----------------GFVVLGR------ILRSCFT-----PDAVTFTSLIKGLCAESR 102
                            GFV  GR      +L    T     PD  T+ SLI G   +  
Sbjct: 339 FYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGL 398

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKP 161
           +  A  +   +R  GCKP+V++YT L++G C+ G    A NL  EM A+G        KP
Sbjct: 399 VGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADG-------LKP 451

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           + + ++ +    CKE  + +A E+F +M  +   PDV T+ SLI G C  ++   A  L 
Sbjct: 452 NTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLL 511

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +M+ +GV  N VT+N ++N   + G++ EA +L+  M+  G   D   YN+L+ G C  
Sbjct: 512 RDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRA 571

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G V++A+ LF  M  +G +    S  ILING C++  +E A+    EM+ +G  P +VT+
Sbjct: 572 GEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTF 631

Query: 342 NT 343
           N+
Sbjct: 632 NS 633



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 165/332 (49%), Gaps = 6/332 (1%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P P  V    ++ G +   +  D    L   + S G+ PD+ TYN LI  + K G V   
Sbjct: 343 PKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLA 402

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             VL  +      P+  ++T L+ G C   +I EA  L  ++ A G KP+   +  LI+ 
Sbjct: 403 LEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISA 462

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+      A+ +F EM          CKPD  T++++  GLC+   +  A  L   M  
Sbjct: 463 FCKEHRIPEAVEIFREMPRKG------CKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 516

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           E +  + VTY +LI  F    +  EA+ L  EM+ QG   + +T+N ++  LC+ G++D+
Sbjct: 517 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDK 576

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  L E M++ G+ P +   N L++G C +G V  A E    M   G   D+ ++  LIN
Sbjct: 577 ARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLIN 636

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G C+   IE  L+++ ++ ++GI P  VTYNT
Sbjct: 637 GLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNT 668



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 4/185 (2%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C+P   +Y+ + + L        A  +F  M    I P + T+  +++  C  N+ + A 
Sbjct: 172 CEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSAL 231

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            +  +M   G  PN V +  +++ L K  +++EA +LLE M  +G  PDA  +N ++ G 
Sbjct: 232 SVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 291

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   R+N A ++   M   G   D  +YG L+NG CK   ++ A  L+  +     +PT 
Sbjct: 292 CKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRI----PKPTS 347

Query: 339 VTYNT 343
           V +NT
Sbjct: 348 VIFNT 352



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 36/212 (16%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENI------------------------------- 194
           Y  +   L   G       L ++MKDE I                               
Sbjct: 108 YQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMR 167

Query: 195 -----NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
                 P   +Y  ++      N    A  +F +M+ + + P + TF V+M  LC   ++
Sbjct: 168 NVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEV 227

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  +L  M + G  P++ +Y TL+       RVN A +L   M   GC+ D  ++  +
Sbjct: 228 DSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDV 287

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           I G CK   I  A  + + ML +G  P  +TY
Sbjct: 288 ILGLCKFDRINEAAKMVNRMLIRGFTPDDITY 319



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 51/100 (51%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F   + +  S P + +FN L   L +    +  L++F++L + G+ PD  TYN L++  C
Sbjct: 615 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLC 674

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103
           K G V    ++L   +   F P+  T++ L++ L  +  +
Sbjct: 675 KGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQETL 714


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 173/327 (52%), Gaps = 7/327 (2%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + +F  L   L K         + + +   G  P++YT+  LI+  CK G     F +
Sbjct: 886  PNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRL 945

Query: 75   LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
              +++RS  + P+  T+TS+I G C E ++  A  LF++++  G  P+V TYTTLING C
Sbjct: 946  FLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHC 1005

Query: 134  RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            + G    A     E+ N  G+ G +  P+  TY+   D LCK+    +A EL  K     
Sbjct: 1006 KAGSFGRAY----ELMNLMGDEGFM--PNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCG 1059

Query: 194  INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +  D VTYT LI+  C  ND N+A   F  M   G + ++   N+++   C+  KM E+ 
Sbjct: 1060 LEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESE 1119

Query: 254  RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            RL +L++ +G+ P    Y +++  +C  G ++ A + F +M+ +GC+ D F+YG LI+G 
Sbjct: 1120 RLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGL 1179

Query: 314  CKNKEIEGALSLYSEMLSKGIRPTVVT 340
            CK   ++ A  LY  M+ +G+ P  VT
Sbjct: 1180 CKKSMVDEACKLYEAMIDRGLSPPEVT 1206



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 157/297 (52%), Gaps = 5/297 (1%)

Query: 47   GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
            G  PD  T  +++   C+ G V+       +++   F P+ + FTSLI GLC +  I +A
Sbjct: 848  GFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQA 907

Query: 107  AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
              +  ++   G KP+V+T+T LI+GLC+ G T  A  LF ++   +       KP+  TY
Sbjct: 908  FEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD-----TYKPNVHTY 962

Query: 167  STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
            +++  G CKE  +++A+ LF +MK++ + P+V TYT+LI G C A  +  A  L   M D
Sbjct: 963  TSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGD 1022

Query: 227  QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            +G  PN+ T+N  ++ LCK  +  EA  LL      G+  D   Y  L+   C    +N+
Sbjct: 1023 EGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQ 1082

Query: 287  AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A   F  M   G   D+    ILI  +C+ K+++ +  L+  ++S G+ PT  TY +
Sbjct: 1083 ALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTS 1139



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/298 (34%), Positives = 154/298 (51%), Gaps = 9/298 (3%)

Query: 38   SLFKRLNSIGLFPDLYTYNIL-INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
            ++F  ++  G+ PD  +Y ++ I CF + G++      L  +++  F PD  T T ++  
Sbjct: 804  NVFDEMSVRGVVPDSSSYKLMVIGCF-RDGKIQEADRWLTGMIQRGFIPDNATCTLILTA 862

Query: 97   LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
            LC    +  A   F K+   G KP++  +T+LI+GLC+ G    A  + EEM   NG   
Sbjct: 863  LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR-NG--- 918

Query: 157  VVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWN 215
               KP+  T++ + DGLCK G+ +KA  LFLK+ + +   P+V TYTS+I G+C  +  N
Sbjct: 919  --WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLN 976

Query: 216  EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
             A+ LF  M +QG+ PNV T+  ++N  CK G    A  L+ LM   G  P+   YN  +
Sbjct: 977  RAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAI 1036

Query: 276  DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
            D  C   R   A EL     S G   D  +Y ILI   CK  +I  AL+ +  M   G
Sbjct: 1037 DSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTG 1094



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 141/287 (49%), Gaps = 7/287 (2%)

Query: 58   LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
            ++  F ++GR++    ++  +     TP ++T   +++       I  A  +F ++   G
Sbjct: 754  MLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRG 813

Query: 118  CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
              PD  +Y  ++ G  R G    A    +    G  + G +  PD  T + I   LC+ G
Sbjct: 814  VVPDSSSYKLMVIGCFRDGKIQEA----DRWLTGMIQRGFI--PDNATCTLILTALCENG 867

Query: 178  FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
             V++A   F KM D    P+++ +TSLI G C      +A  +  EM+  G +PNV T  
Sbjct: 868  LVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHT 927

Query: 238  VIMNELCKNGKMDEASRL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++ LCK G  ++A RL L+L+     +P+   Y +++ G+C   ++NRA+ LF  M+ 
Sbjct: 928  ALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKE 987

Query: 297  NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   +V +Y  LING+CK      A  L + M  +G  P + TYN 
Sbjct: 988  QGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNA 1034



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 147/340 (43%), Gaps = 9/340 (2%)

Query: 1    FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            F +F  ++R     P V ++  + G   K    +    LF R+   GLFP++ TY  LIN
Sbjct: 943  FRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 1002

Query: 61   CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              CK G     + ++  +    F P+  T+ + I  LC +SR  EA  L  K  + G + 
Sbjct: 1003 GHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEA 1062

Query: 121  DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            D  TYT LI   C+      AL  F  M N  G      + D    + +    C++  + 
Sbjct: 1063 DGVTYTILIQEQCKQNDINQALAFFCRM-NKTG-----FEADMRLNNILIAAFCRQKKMK 1116

Query: 181  KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            +++ LF  +    + P   TYTS+I  +C   D + A   F  M   G  P+  T+  ++
Sbjct: 1117 ESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLI 1176

Query: 241  NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
            + LCK   +DEA +L E MI  G+ P      TL   +C       A  L   ++    +
Sbjct: 1177 SGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDKKLWI 1236

Query: 301  RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            R V +   L+   C  K++  A   + ++L K      VT
Sbjct: 1237 RTVRT---LVRKLCSEKKVGVAALFFQKLLEKDSSADRVT 1273



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 131/291 (45%), Gaps = 19/291 (6%)

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA------AALFTKLRAFGCKPDV 122
           SP  V L     S     A+T   ++  L +ES  M A      A  F K R F     V
Sbjct: 677 SPHRVNLDFDANSLTHEQAIT---VVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLV 733

Query: 123 FTYTTLINGLCRTGHTIVA--LNLFEEMANGNGEFGVVCK-------PDAITYSTITDGL 173
              + L NG  +  H ++   L  F E+   N   G+V         P +IT + + +  
Sbjct: 734 TADSLLANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIA 793

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
            + G ++ A+ +F +M    + PD  +Y  ++ G        EA      M+ +G  P+ 
Sbjct: 794 VELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDN 853

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T  +I+  LC+NG ++ A      MI +G +P+   + +L+DG C  G + +A E+   
Sbjct: 854 ATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEE 913

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML-SKGIRPTVVTYNT 343
           M  NG   +V+++  LI+G CK    E A  L+ +++ S   +P V TY +
Sbjct: 914 MVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTS 964


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +  ++   L ++   +    +F+ + S+G+ P+   Y  LI    + GR      +
Sbjct: 444 PTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRI 503

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    PD + + S+I GLC   ++ EA     ++   G KP+V+TY  LI+G C+
Sbjct: 504 LKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCK 563

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G   VA   F+EM       G    P+ +  + + DG CKEG   +A  +F  M   ++
Sbjct: 564 SGEMQVADRYFKEM------LGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSV 617

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDV TY++LI G         A  L  E +++G+ P+V T+N I++  CK G + +A +
Sbjct: 618 HPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQ 677

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M Q G+ P+   YN L++G C  G + RA+ELF  +   G   +  +Y  +I+GYC
Sbjct: 678 LHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYC 737

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+  +  A  L+ EM  KG+ P    Y+ 
Sbjct: 738 KSGNLSKAFRLFDEMTLKGVPPDSFVYSA 766



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 169/325 (52%), Gaps = 6/325 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N++ G L +    D    L K ++  GL  D++TY+ILI+ F K  R +   ++
Sbjct: 269 PSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLM 328

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P  V +T+LI G   +    EA  +  ++ A G K ++FTY  L+ G+C+
Sbjct: 329 LEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCK 388

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L  EM        V  KPD  TY+ + +G  KE    + K+L  +MK  N+
Sbjct: 389 FGDMEKADALLNEM------IMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNL 442

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P   T   +I G C      +A  +F  M+  GV+PN V +  ++    + G+  EA R
Sbjct: 443 VPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVR 502

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L++M + GV+PD   YN+++ G C + ++  AK+  V M   G   +V++YG LI+GYC
Sbjct: 503 ILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYC 562

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVV 339
           K+ E++ A   + EML  GI P  V
Sbjct: 563 KSGEMQVADRYFKEMLGCGIAPNDV 587



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 158/297 (53%), Gaps = 6/297 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+  +L+TYN L+   CK G +     +L  ++     PD  T+ ++I+G   E      
Sbjct: 371 GVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRV 430

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             L ++++     P  +T   +INGLCR G    A  +FE M +     GV  KP+A+ Y
Sbjct: 431 KDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVS----LGV--KPNAVIY 484

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+  G  +EG   +A  +   M  + + PDV+ Y S+I G C +    EAK   +EM++
Sbjct: 485 TTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIE 544

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G++PNV T+  +++  CK+G+M  A R  + M+  G+ P+  V   L+DG+C  G    
Sbjct: 545 RGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTE 604

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A  +F  M       DV +Y  LI+G  +N +++GA+ L SE L KG+ P V TYN+
Sbjct: 605 ATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNS 661



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 160/305 (52%), Gaps = 7/305 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           S+F+ +    + PD+ TY+ LI+   + G++     +L   L     PD  T+ S+I G 
Sbjct: 607 SIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGF 666

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C +  I +A  L   +   G  P++ TY  LINGLC+ G    A  LF+      G  G 
Sbjct: 667 CKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFD------GIPGK 720

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
               +A+TY+TI DG CK G + KA  LF +M  + + PD   Y++LI G     +  +A
Sbjct: 721 GLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKA 780

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             LF+E + +G   +  + N +M+  CK+GK+ EA++LLE M+   V+PD   Y  L+D 
Sbjct: 781 LSLFLESVQKGF-ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDY 839

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C TG +  A++ FV M+    M +  +Y  L++GY          +L+ EM++K I P 
Sbjct: 840 HCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPD 899

Query: 338 VVTYN 342
            VT++
Sbjct: 900 GVTWS 904



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 161/325 (49%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N L   + K    +   +L   +  +G+ PD  TYN +I  + K    S    +L  +
Sbjct: 378 TYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEM 437

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +S   P A T   +I GLC    I +A+ +F  + + G KP+   YTTLI G  + G  
Sbjct: 438 KKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRF 497

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+ + + M           +PD + Y+++  GLCK   +++AK+  ++M +  + P+V
Sbjct: 498 QEAVRILKVMDKKG------VQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNV 551

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TY +LI G+C + +   A   F EM+  G+ PN V    +++  CK G   EA+ +   
Sbjct: 552 YTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRC 611

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+   V PD   Y+ L+ G    G++  A EL       G + DVF+Y  +I+G+CK   
Sbjct: 612 MLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGG 671

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           I  A  L+  M  KGI P ++TYN 
Sbjct: 672 IGKAFQLHEYMCQKGISPNIITYNA 696



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 162/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K ++   V  L   +    L P  YT  ++IN  C+ G +     V
Sbjct: 409 PDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRV 468

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+AV +T+LIKG   E R  EA  +   +   G +PDV  Y ++I GLC+
Sbjct: 469 FEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCK 528

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A +   EM     E G+  KP+  TY  +  G CK G +  A   F +M    I
Sbjct: 529 SRKMEEAKDYLVEMI----ERGL--KPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGI 582

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V  T+LI G+C      EA  +F  M+ + V P+V T++ +++ L +NGK+  A  
Sbjct: 583 APNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAME 642

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL   ++ G+ PD   YN+++ GFC  G + +A +L   M   G   ++ +Y  LING C
Sbjct: 643 LLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLC 702

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  EIE A  L+  +  KG+    VTY T
Sbjct: 703 KAGEIERARELFDGIPGKGLAHNAVTYAT 731



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 158/319 (49%), Gaps = 7/319 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L   L +N      + L       GL PD++TYN +I+ FCK G +   F +
Sbjct: 619 PDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQL 678

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +   +P+ +T+ +LI GLC    I  A  LF  +   G   +  TY T+I+G C+
Sbjct: 679 HEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCK 738

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+   A  LF+EM            PD+  YS + DG  KEG  +KA  LFL+   +  
Sbjct: 739 SGNLSKAFRLFDEMTLKG------VPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF 792

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
                +  +L+ GFC +    EA  L  +M+D+ V+P+ VT+ ++++  CK G + EA +
Sbjct: 793 -ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQ 851

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M +  + P+A  Y  L+ G+ + GR +    LF  M +     D  ++ ++I+ + 
Sbjct: 852 FFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHL 911

Query: 315 KNKEIEGALSLYSEMLSKG 333
           K  +    L L  +ML KG
Sbjct: 912 KEGDHVKTLKLVDDMLKKG 930



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 156/324 (48%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F +L     K   +D  +S F      G    L   N L++   K  ++   +     +L
Sbjct: 169 FELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGML 228

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            +    D  T+T LI          E   L  ++   GC P + TY  +I GLCR G   
Sbjct: 229 EANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVD 288

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L + M       G+V   D  TYS + DG  K+    +AK +  +M  + + P  V
Sbjct: 289 EAFELKKLMDKK----GLVA--DVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHV 342

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            YT+LI GF    D  EA  +  EM+ +GV+ N+ T+N ++  +CK G M++A  LL  M
Sbjct: 343 AYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEM 402

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           I +G++PD   YN +++G+      +R K+L   M+ +  +   ++ G++ING C++  I
Sbjct: 403 IMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSI 462

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           E A  ++  M+S G++P  V Y T
Sbjct: 463 EDASRVFEIMVSLGVKPNAVIYTT 486



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 28/344 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +     K         L + +   G+ P++ TYN LIN  CK G +     +
Sbjct: 654 PDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAREL 713

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I       +AVT+ ++I G C    + +A  LF ++   G  PD F Y+ LI+G  +
Sbjct: 714 FDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRK 773

Query: 135 TGHTIVALNLFEE--------------MANGNGEFGVV--------------CKPDAITY 166
            G+T  AL+LF E              + +G  + G V               KPD +TY
Sbjct: 774 EGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTY 833

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + + D  CK GF+ +A++ F+ M+  N+ P+ +TYT+L+ G+  A   +E   LF EM+ 
Sbjct: 834 TILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIA 893

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           + ++P+ VT++V+++   K G   +  +L++ M++ G     +V + L+D  C    V+ 
Sbjct: 894 KDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSE 953

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
             ++   +E  G    + +   L+  + K  +++GA  +   M+
Sbjct: 954 VLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMV 997



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 35/216 (16%)

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMK-------------------------------- 190
            + +  + DG  K+G  D+A   FL  K                                
Sbjct: 166 GVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYN 225

Query: 191 ---DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
              + N+  DV TYT LI     A +  E K L  EM ++G  P++VT+NV++  LC+ G
Sbjct: 226 GMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAG 285

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           ++DEA  L +LM + G+  D   Y+ L+DGF    R   AK +   M S G      +Y 
Sbjct: 286 EVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYT 345

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LI+G+ +  +   A  +  EML++G++  + TYN 
Sbjct: 346 ALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNA 381



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 149/363 (41%), Gaps = 41/363 (11%)

Query: 1    FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            F + +YM +   SP  + ++N L   L K    +    LF  +   GL  +  TY  +I+
Sbjct: 676  FQLHEYMCQKGISPN-IITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIID 734

Query: 61   CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG------------------------ 96
             +CK G +S  F +   +      PD+  +++LI G                        
Sbjct: 735  GYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFAS 794

Query: 97   ----------LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
                       C   +++EA  L   +     KPD  TYT LI+  C+TG    A   F 
Sbjct: 795  TSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFV 854

Query: 147  EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
            +M   N        P+A+TY+ +  G    G   +   LF +M  ++I PD VT++ +I 
Sbjct: 855  DMQKRN------LMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMID 908

Query: 207  GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
                  D  +   L  +M+ +G   +    +V+++ LC+   + E  ++LE + + G+  
Sbjct: 909  AHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNL 968

Query: 267  DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
              +  +TL+  F   G+++ A  +  SM     + D      LIN    + + E A    
Sbjct: 969  SLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLINVEQDSTDSENAGDFL 1028

Query: 327  SEM 329
             +M
Sbjct: 1029 KQM 1031


>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
          Length = 466

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 15/327 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F++L   L +N   D+ + + +++   G  PD   YNI+IN   + GRV     +
Sbjct: 142 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 201

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PDA+ F +++KG C   R  +A+ L  ++    C     T+  LI+ LC+
Sbjct: 202 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQ 258

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +FE+M          C PD +TYS++ +G  ++G V+ A +LF  M     
Sbjct: 259 NGLVNYATQVFEQMPR------YRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMP---C 309

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ +Y ++++G C A  W +A  L  EM+ +   PN VTFN+++N LC+ G +D A  
Sbjct: 310 KPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIE 369

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +LE M   G  PD   YN L++GF   GR++ A +L  +M    C  D  SY   + G C
Sbjct: 370 VLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM---SCKPDAISYNSTLKGLC 426

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +  + A  L +EML     P  VT+
Sbjct: 427 RAERWQDAEELVAEMLRNKCTPNEVTF 453



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 147/294 (50%), Gaps = 12/294 (4%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD YTYN ++   C   +      ++  ++R+   P+ VTF + I+  C    +  A  L
Sbjct: 5   PDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQL 64

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             ++  +GC PDV  Y+TLING    GH   AL+L   M         +CKP+ + Y+  
Sbjct: 65  LDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM---------LCKPNTVCYNAA 115

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GLC     +   EL  +M  +  +P+  T++ LI   C  N  + A  +  +M   G 
Sbjct: 116 LKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGC 175

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +P+ V +N+I+N L + G++D+A RLL  M+    +PDA  +N ++ GFC   R + A E
Sbjct: 176 EPDTVNYNIIINSLSERGRVDDALRLLNSMV---CKPDALGFNAVLKGFCRAERWHDASE 232

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L   M  + C     ++ ILI+  C+N  +  A  ++ +M      P +VTY++
Sbjct: 233 LIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSS 286



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 155/325 (47%), Gaps = 44/325 (13%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI--------------- 94
           P+  T+   I  FC+ G +     +L ++ R   TPD V +++LI               
Sbjct: 40  PNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDL 99

Query: 95  -----------------KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
                            KGLC   R  +   L  ++   GC P+  T++ LI+ LC+   
Sbjct: 100 LNTMLCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNL 159

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A+ + E+M     ++G  C+PD + Y+ I + L + G VD A  L   M      PD
Sbjct: 160 VDSAVEVLEQME----KYG--CEPDTVNYNIIINSLSERGRVDDALRLLNSMV---CKPD 210

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            + + ++++GFC A  W++A  L  +M         +TFN++++ LC+NG ++ A+++ E
Sbjct: 211 ALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFE 270

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M +    PD   Y++L++GF   G V  A +LF SM    C  D+FSY  ++ G C+  
Sbjct: 271 QMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMP---CKPDIFSYNAVLKGLCRAA 327

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYN 342
             E A  L +EM+ K   P  VT+N
Sbjct: 328 RWEDAGELIAEMVGKDCPPNEVTFN 352



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TY ++++G C A  W EA+ L  EM+     PN VTF   +   C+NG +D A 
Sbjct: 3   VAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAV 62

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +LL+ M + G  PD  +Y+TL++GF   G V++A +L  +M    C  +   Y   + G 
Sbjct: 63  QLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGL 119

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           C  +  E    L +EM+ KG  P   T++
Sbjct: 120 CIAERWEDIGELMAEMVRKGCSPNEATFS 148



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R  P  P + S+N +   L +   ++    L   +      P+  T+NILIN  C+ G
Sbjct: 303 LFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKG 362

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V     VL ++     TPD  T+ +LI G   + R+ +A  L + +    CKPD  +Y 
Sbjct: 363 LVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM---SCKPDAISYN 419

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
           + + GLCR      A  L  EM          C P+ +T+
Sbjct: 420 STLKGLCRAERWQDAEELVAEMLRNK------CTPNEVTF 453



 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 43/115 (37%), Gaps = 38/115 (33%)

Query: 264 VRPDASVYNTLMDG-----------------------------------FCLTGRVNRAK 288
           V PD   YNT++ G                                   FC  G ++RA 
Sbjct: 3   VAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAV 62

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +L   M   GC  DV  Y  LING+ +   ++ AL L + ML K   P  V YN 
Sbjct: 63  QLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCK---PNTVCYNA 114


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 179/344 (52%), Gaps = 16/344 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKN---KHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           +F +M R  P  P   ++N L   L +    +H    LSL  R    G  PD +T+N LI
Sbjct: 115 LFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVR---SGWRPDAFTFNSLI 171

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
             +C+  ++     +  ++    F+ DAV++ +LI+G C   RI EA  LF ++     +
Sbjct: 172 LGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREM----TQ 227

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD++T+  L+ GLC  G     L + ++M     E G   +P    Y+ + D  C+E   
Sbjct: 228 PDMYTHAALVKGLCDAGRGEEGLCMLQKMK----ELG--WRPTTRAYAALVDLWCREQKA 281

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           ++A+++  +M D  + P VVT T ++  +C     + A  +F  M  +G +PNV T+N I
Sbjct: 282 EEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAI 341

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   C  GK+ +A  LL+ M + GV PD   YN L+ G C+ G +  A  L   ME NG 
Sbjct: 342 VQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGL 401

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             D ++Y +LI+  CK  +++ A SL+  +  +GIRP  VT+NT
Sbjct: 402 AADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNT 445



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 155/324 (47%), Gaps = 10/324 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L     +    D  L LF+ +      PD+YT+  L+   C  GR   G  +L ++
Sbjct: 201 SYAALIEGFCEAGRIDEALELFREMTQ----PDMYTHAALVKGLCDAGRGEEGLCMLQKM 256

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
               + P    + +L+   C E +  EA  +  ++   G  P V T T ++N  CR G  
Sbjct: 257 KELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRM 316

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+ +FE M          C+P+  TY+ I  G C  G V KA  L  +M++  + PDV
Sbjct: 317 SGAVRVFESMRFKG------CEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDV 370

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY  LIRG C       A  L   M   G+  +  T+NV+++ LCK GK+DEA  L + 
Sbjct: 371 VTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDG 430

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           +   G+RP++  +NT+++G C  G+ + A     +M S G   D ++Y   I   CK K 
Sbjct: 431 LEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKG 490

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
            +  L    EML K ++P+ V Y 
Sbjct: 491 SQEGLFFIDEMLQKDVKPSTVNYT 514



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 151/327 (46%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +  I+     +       + +F+ +   G  P+++TYN ++  FC  G+V     +
Sbjct: 298 PCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMAL 357

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT+  LI+G C +  I  A  L   +   G   D +TY  LI+ LC+
Sbjct: 358 LDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCK 417

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    A +LF+ +     E+  + +P+++T++T+ +GLCK G  D A      M     
Sbjct: 418 TGKVDEACSLFDGL-----EYRGI-RPNSVTFNTVINGLCKAGKFDVACTFLENMISAGY 471

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY+  I   C      E      EM+ + V+P+ V + +++N L        A+R
Sbjct: 472 APDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATR 531

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M+  G  PD   Y T +  +C  GR++ A+ +   M+    + D  +Y  LI+G+ 
Sbjct: 532 IWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHT 591

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
              + + A+++   M      P   T+
Sbjct: 592 SIGQTDRAVTILKHMTGVASMPNHFTF 618



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 153/330 (46%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     + +  +    +   +   GL P + T  I++N +C+ GR+S    V
Sbjct: 263 PTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRV 322

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+  T+ ++++G C   ++ +A AL  ++R  G +PDV TY  LI G C 
Sbjct: 323 FESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCI 382

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            GH   A  L   M  GNG        D  TY+ + D LCK G VD+A  LF  ++   I
Sbjct: 383 DGHIGSAFRLLRLM-EGNG-----LAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGI 436

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIE-MMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            P+ VT+ ++I G C A  ++ A C F+E M+  G  P+  T++  +  LCK     E  
Sbjct: 437 RPNSVTFNTVINGLCKAGKFDVA-CTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGL 495

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             ++ M+Q  V+P    Y  +++          A  ++  M S GC  DV +Y   +  Y
Sbjct: 496 FFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAY 555

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C    ++ A ++ +EM         + YNT
Sbjct: 556 CNEGRLDEAENVVTEMKKCRTIVDAMAYNT 585



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 141/306 (46%), Gaps = 7/306 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M R     P V ++N +             ++L  ++   G+ PD+ TYN+LI   
Sbjct: 322 VFESM-RFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQ 380

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +   F +L  +  +    D  T+  LI  LC   ++ EA +LF  L   G +P+ 
Sbjct: 381 CIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNS 440

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+ T+INGLC+ G   VA    E M +          PD  TYS   + LCK     + 
Sbjct: 441 VTFNTVINGLCKAGKFDVACTFLENMISAG------YAPDTYTYSPFIENLCKTKGSQEG 494

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
                +M  +++ P  V YT +I       ++  A  ++ +M+ QG  P+VVT+   +  
Sbjct: 495 LFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRA 554

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G++DEA  ++  M +     DA  YNTL+DG    G+ +RA  +   M     M +
Sbjct: 555 YCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPN 614

Query: 303 VFSYGI 308
            F++ I
Sbjct: 615 HFTFFI 620



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 144/380 (37%), Gaps = 61/380 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN +   L K   +D   +  + + S G  PD YTY+  I   CK      G   
Sbjct: 438 PNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFF 497

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L+    P  V +T +I  L  E     A  ++ ++ + GC PDV TYTT +   C 
Sbjct: 498 IDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCN 557

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKP--DAITYSTITDGLCKEGFVDKAK--------- 183
            G    A N+  EM          C+   DA+ Y+T+ DG    G  D+A          
Sbjct: 558 EGRLDEAENVVTEMKK--------CRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGV 609

Query: 184 ------------------------------------------ELFLKMKDENINPDVVTY 201
                                                     ELF  MK  ++     TY
Sbjct: 610 ASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTY 669

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            S++ GF      +E   L   M ++ +  N   +N ++N  CK     +A  LL  MI 
Sbjct: 670 LSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIG 729

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G  P+   Y  L+ G    G+ +RAKE+F S        D   + ++I+G+ +    + 
Sbjct: 730 HGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGHADM 789

Query: 322 ALSLYSEMLSKGIRPTVVTY 341
              + S +     +P+  TY
Sbjct: 790 CHDMISMLEQMKCKPSDETY 809



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 13/176 (7%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F+ M +           +IL G  ++ +  D V SL   +    L  +   YN L+N
Sbjct: 651 FELFELMKKNSVPSSARTYLSILEG-FSEERRLDEVTSLVSLMKEENLPLNEDIYNALVN 709

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CFCK+   S  + +L  ++   F P+ + +  L+ GL AE +   A  +F   R      
Sbjct: 710 CFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNT 769

Query: 121 DVFTYTTLINGLCRTGHTIV---ALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
           D   +  +I+G  R GH  +    +++ E+M          CKP   TY+ +T+ L
Sbjct: 770 DEIVWKVIIDGFIRKGHADMCHDMISMLEQMK---------CKPSDETYAMLTEEL 816


>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
 gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
          Length = 649

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 15/327 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F++L   L +N   D+ + + +++   G  PD   YNI+IN   + GRV     +
Sbjct: 325 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PDA+ F +++KG C   R  +A+ L  ++    C     T+  LI+ LC+
Sbjct: 385 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQ 441

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +FE+M          C PD +TYS++ +G  ++G V+ A +LF  M     
Sbjct: 442 NGLVNYATQVFEQMPR------YRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMP---C 492

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+ +Y ++++G C A  W +A  L  EM+ +   PN VTFN+++N LC+ G +D A  
Sbjct: 493 KPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIE 552

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +LE M   G  PD   YN L++GF   GR++ A +L  +M    C  D  SY   + G C
Sbjct: 553 VLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM---SCKPDAISYNSTLKGLC 609

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +  + A  L +EML     P  VT+
Sbjct: 610 RAERWQDAEELVAEMLRNKCTPNEVTF 636



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 160/327 (48%), Gaps = 15/327 (4%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++  L     ++   D  L L   + S+ + PD YTYN ++   C   +      ++ 
Sbjct: 158 VVTYTALIDGYCRSGRLDDALRL---IASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMA 214

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++R+   P+ VTF + I+  C    +  A  L  ++  +GC PDV  Y+TLING    G
Sbjct: 215 EMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQG 274

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           H   AL+L   M         +CKP+ + Y+    GLC     +   EL  +M  +  +P
Sbjct: 275 HVDQALDLLNTM---------LCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSP 325

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +  T++ LI   C  N  + A  +  +M   G +P+ V +N+I+N L + G++D+A RLL
Sbjct: 326 NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLL 385

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M+    +PDA  +N ++ GFC   R + A EL   M  + C     ++ ILI+  C+N
Sbjct: 386 NSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQN 442

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  A  ++ +M      P +VTY++
Sbjct: 443 GLVNYATQVFEQMPRYRCTPDIVTYSS 469



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 167/365 (45%), Gaps = 50/365 (13%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +F        +N   D  + L  ++   G  PD+  Y+ LIN F + G V     
Sbjct: 222 PPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALD 281

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +L     P+ V + + +KGLC   R  +   L  ++   GC P+  T++ LI+ LC
Sbjct: 282 LLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLC 338

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A+ + E+M     ++G  C+PD + Y+ I + L + G VD A  L   M    
Sbjct: 339 QNNLVDSAVEVLEQME----KYG--CEPDTVNYNIIINSLSERGRVDDALRLLNSMV--- 389

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD + + ++++GFC A  W++A  L  +M         +TFN++++ LC+NG ++ A+
Sbjct: 390 CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYAT 449

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG------ 307
           ++ E M +    PD   Y++L++GF   G V  A +LF SM    C  D+FSY       
Sbjct: 450 QVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMP---CKPDIFSYNAVLKGL 506

Query: 308 -----------------------------ILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
                                        ILIN  C+   ++ A+ +  +M + G  P +
Sbjct: 507 CRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDI 566

Query: 339 VTYNT 343
            TYN 
Sbjct: 567 FTYNA 571



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 145/292 (49%), Gaps = 15/292 (5%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           ++ TY  LI+ +C+ GR+     ++  +      PD  T+ +++KGLC   +  EA  L 
Sbjct: 157 NVVTYTALIDGYCRSGRLDDALRLIASMP---VAPDTYTYNTVLKGLCIAKKWEEAEELM 213

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++    C P+  T+ T I   C+ G    A+ L ++M      +G  C PD + YST+ 
Sbjct: 214 AEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMP----RYG--CTPDVVIYSTLI 267

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +G  ++G VD+A +L   M      P+ V Y + ++G C A  W +   L  EM+ +G  
Sbjct: 268 NGFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCS 324

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN  TF+++++ LC+N  +D A  +LE M + G  PD   YN +++     GRV+ A  L
Sbjct: 325 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             SM    C  D   +  ++ G+C+ +    A  L ++M         +T+N
Sbjct: 385 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFN 433



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 14/250 (5%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LIK LCA  R+ +A  +   L+A      V ++ TL+ G CR G    A  +    A   
Sbjct: 96  LIKKLCATRRLADAERVLDALKAAAAADAV-SHNTLVAGYCRDGRLADAERVLG-AARAT 153

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
           G   VV      TY+ + DG C+ G +D A  L   M    + PD  TY ++++G C A 
Sbjct: 154 GAANVV------TYTALIDGYCRSGRLDDALRLIASMP---VAPDTYTYNTVLKGLCIAK 204

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W EA+ L  EM+     PN VTF   +   C+NG +D A +LL+ M + G  PD  +Y+
Sbjct: 205 KWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYS 264

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           TL++GF   G V++A +L  +M    C  +   Y   + G C  +  E    L +EM+ K
Sbjct: 265 TLINGFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRK 321

Query: 333 GIRPTVVTYN 342
           G  P   T++
Sbjct: 322 GCSPNEATFS 331



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R  P  P + S+N +   L +   ++    L   +      P+  T+NILIN  C+ G
Sbjct: 486 LFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKG 545

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V     VL ++     TPD  T+ +LI G   + R+ +A  L + +    CKPD  +Y 
Sbjct: 546 LVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM---SCKPDAISYN 602

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
           + + GLCR      A  L  EM          C P+ +T+
Sbjct: 603 STLKGLCRAERWQDAEELVAEMLRNK------CTPNEVTF 636


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 184/389 (47%), Gaps = 55/389 (14%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M      P  +    +L G     K +D    LF ++ + G   DL TYN+L+N F
Sbjct: 220 LFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQ-RLFSKMRASGCNRDLITYNVLLNGF 278

Query: 63  CKMGRVSPGFVVLG-----------------------------------RILRSCFTPDA 87
           CK G +   F +L                                    ++LR    PD 
Sbjct: 279 CKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDV 338

Query: 88  VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           + +T +I+GL  E R+ EA  L  ++   G +PD   Y  LI G C  G+   A +L  E
Sbjct: 339 MLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLE 398

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           ++  +      C P+  TYS +  G+CK G ++KA+ +F +M+     P VVT+ SLI G
Sbjct: 399 ISKHD------CFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLING 452

Query: 208 FCYANDWNEAKCLFIEM-----------MDQGVQP--NVVTFNVIMNELCKNGKMDEASR 254
            C AN   EA+ LF +M           + QG     ++ +  V+M  LC++G + +A +
Sbjct: 453 LCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYK 512

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  ++  GV PD   YN L++GFC  G +N A +LF  M+  G M D  +YG LI+G  
Sbjct: 513 LLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLY 572

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +    E AL ++ +M+ KG  P   TY T
Sbjct: 573 RAGRNEDALEIFEQMVKKGCVPESSTYKT 601



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 187/414 (45%), Gaps = 77/414 (18%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++R     P + +FN++   L + + +   L+++ ++    L PD+ TY ILI+  CK  
Sbjct: 153 LMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTC 212

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +     V+   +      P+ + ++ ++ GLC   +I +A  LF+K+RA GC  D+ TY 
Sbjct: 213 KTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYN 272

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVV---------------------------- 158
            L+NG C++G+   A  L + +       GV+                            
Sbjct: 273 VLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRE 332

Query: 159 -CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
             KPD + Y+ +  GL +EG V +A  L  +M +  + PD + Y +LI+GFC     +EA
Sbjct: 333 NIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA 392

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           + L +E+      PN  T+++++  +CKNG +++A  + + M ++G  P    +N+L++G
Sbjct: 393 ESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLING 452

Query: 278 FCLTGRVNRAKELFVSME------------------------------------------ 295
            C   R+  A+ LF  ME                                          
Sbjct: 453 LCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYK 512

Query: 296 ------SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                  +G + D+ +Y ILING+CK   I GA  L+ EM  KG  P  VTY T
Sbjct: 513 LLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGT 566



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 166/326 (50%), Gaps = 8/326 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +F++L    ++    +  +  F  +      PDL+ +N++++   +         V  ++
Sbjct: 130 AFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQM 189

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L+    PD VT+  LI GLC   +  +A  LF ++   G  P+   Y+ +++GLC+    
Sbjct: 190 LKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKI 249

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A  LF +M A+G       C  D ITY+ + +G CK G++D A  L   +  +     
Sbjct: 250 FDAQRLFSKMRASG-------CNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILG 302

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V+ Y  LI G   A  + EA   + +M+ + ++P+V+ + +++  L + G++ EA  LL 
Sbjct: 303 VIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLG 362

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M + G+RPD   YN L+ GFC  G ++ A+ L + +  + C  +  +Y ILI G CKN 
Sbjct: 363 EMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNG 422

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            I  A  ++ EM   G  P+VVT+N+
Sbjct: 423 LINKAQHIFKEMEKLGCLPSVVTFNS 448



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 141/293 (48%), Gaps = 21/293 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  + I+   L++       L+L   +   GL PD   YN LI  FC MG +     +
Sbjct: 336 PDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESL 395

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I +    P+  T++ LI G+C    I +A  +F ++   GC P V T+ +LINGLC+
Sbjct: 396 RLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCK 455

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKP--------------DAITYSTITDGLCKEGFVD 180
                 A  LF +M        +V KP              D  +   + + LC+ G + 
Sbjct: 456 ANRLEEARLLFYQME-------IVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMIL 508

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA +L +++ D  + PD+ TY  LI GFC   + N A  LF EM  +G  P+ VT+  ++
Sbjct: 509 KAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLI 568

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           + L + G+ ++A  + E M++ G  P++S Y T+M   C    ++ A  +++ 
Sbjct: 569 DGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMK 621



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 4/180 (2%)

Query: 168 TITDGLCKEGFVDKAKELFLK----MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           T+ D +  +   + A EL+ K    +K+  I      ++ LI  +  A    +A   F  
Sbjct: 94  TVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGL 153

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M D   +P++  FN+I++ L +      A  +   M++  + PD   Y  L+ G C T +
Sbjct: 154 MRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCK 213

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              A  LF  M   G + +   Y I+++G C+ K+I  A  L+S+M + G    ++TYN 
Sbjct: 214 TQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNV 273



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 9/239 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NIL     K  + +    LFK +   G  PD  TY  LI+   + GR      +
Sbjct: 524 PDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEI 583

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK-LRAFGCKPDVFTYTTLINGLC 133
             ++++    P++ T+ +++   C E+ I  A +++ K LR F    D      ++    
Sbjct: 584 FEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGWED--EKVRVVAESF 641

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                  A+    EM   +  F      D   Y+    GL +     +A  +F  +KD  
Sbjct: 642 DNEELQTAIRRLLEMDIKSKNF------DLAPYTIFLIGLVQAKRDCEAFAIFSVLKDFK 695

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           +N    +   LI   C   + + A  +F+  +++G +      N ++  L    + D+A
Sbjct: 696 MNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPICNQLLCNLLHLDRKDDA 754


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 174/338 (51%), Gaps = 10/338 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +   L +    +    LF+ + S+G+ PD+YTY ILI+ FCK+G +      
Sbjct: 453 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSW 512

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P  VT+T+L+       ++ +A+ +F ++   GC P+  TY+ L++GLC+
Sbjct: 513 FDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCK 572

Query: 135 TGHTIVALNLFEEMANGN----------GEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
            G +  A  ++ +M   +          GE      P+ +TY  + DGLCK   V  A+E
Sbjct: 573 AGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQE 632

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L   M      P+ + Y +LI GFC     + A+ +F  M   G  P V T+  +++ + 
Sbjct: 633 LLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMF 692

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K+ ++D A ++L  M++    P+   Y  ++DG C  G   +A +L   ME  GC  +V 
Sbjct: 693 KDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVV 752

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +Y  LI+G  K+ +++ +L L+++M+++G  P  VTY 
Sbjct: 753 TYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYR 790



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 160/334 (47%), Gaps = 22/334 (6%)

Query: 26  CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP 85
           CL     +D    + K +   G  PD  TY+ +I   C+  +V   F++   +      P
Sbjct: 429 CLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIP 488

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D  T+T LI   C    I +A + F ++ + GC P V TYT L++   +T     A ++F
Sbjct: 489 DVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIF 548

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM---------------- 189
             M +        C P+ ITYS + DGLCK G   KA E++ KM                
Sbjct: 549 HRMVDAG------CAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGE 602

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
             ++I P+VVTY +LI G C A+   +A+ L   M   G +PN + ++ +++  CK GK+
Sbjct: 603 HTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKL 662

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  +   M + G  P    Y +L+D      R++ A ++   M  + C  +V +Y  +
Sbjct: 663 DNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAM 722

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+G C+  E + AL L S M  +G  P VVTY +
Sbjct: 723 IDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTS 756



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 167/409 (40%), Gaps = 83/409 (20%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L     K K       +F R+   G  P+  TY+ L++  CK G       V
Sbjct: 523 PSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEV 582

Query: 75  LGRILRSC----------------FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
             +++ +                   P+ VT+ +LI GLC   ++++A  L   + + GC
Sbjct: 583 YAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGC 642

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-------------------- 158
           +P+   Y  LI+G C+ G    A  +F  M+   G    V                    
Sbjct: 643 EPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKC-GYLPTVHTYTSLIDAMFKDRRLDLAI 701

Query: 159 ----------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                     C P+ +TY+ + DGLC+ G   KA +L   M+    NP+VVTYTSLI G 
Sbjct: 702 KVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGL 761

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI------ 262
             +   + +  LF +M+ QG  PN VT+ V++N  C  G +DEA  LL  M Q       
Sbjct: 762 GKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYV 821

Query: 263 ---------------------------GVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
                                      G+   A VY  L+D F   GR+ +A EL   M 
Sbjct: 822 QGYCSVVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMM 881

Query: 296 SNGCMRDVFS---YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                 ++ S   Y  LI   C   ++E A  LYSE+  KG+ P +  +
Sbjct: 882 EVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAF 930



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 154/318 (48%), Gaps = 11/318 (3%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           ++ L     K    D    +F R++  G  P ++TY  LI+   K  R+     VL ++L
Sbjct: 649 YDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQML 708

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            S  TP+ VT+T++I GLC      +A  L + +   GC P+V TYT+LI+GL ++G   
Sbjct: 709 ESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVD 768

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
           ++L LF +M          C P+ +TY  + +  C  G +D+A  L  +MK       V 
Sbjct: 769 MSLQLFTQMITQG------CAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQ 822

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            Y S+++GF  +  +  +  L  E+   G+      + ++++   K G++++A  L + M
Sbjct: 823 GYCSVVQGF--SKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEM 880

Query: 260 IQIGVR---PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           +++           Y +L+   CL  ++ +A EL+  +   G + ++ ++  LI G  K 
Sbjct: 881 MEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKV 940

Query: 317 KEIEGALSLYSEMLSKGI 334
            +   AL L   M  +G+
Sbjct: 941 NKWNEALQLCYSMCDEGV 958



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 172/397 (43%), Gaps = 63/397 (15%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F + +R +   P V ++  L     K K       +   + + G  P+   +N L++ +C
Sbjct: 296 FLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYC 355

Query: 64  K----------MGRVS-----PGFVV----LGRI----------------------LRSC 82
                      + R++     PG+VV    +G I                      L S 
Sbjct: 356 NARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASS 415

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
              + V   +  + LC   +  +A  +   +   G  PD  TY+ +I  LC       A 
Sbjct: 416 CVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAF 475

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            LF+EM +     GV+  PD  TY+ + D  CK G +++A+  F +M+    +P VVTYT
Sbjct: 476 LLFQEMKS----VGVI--PDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYT 529

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI-- 260
           +L+  +       +A  +F  M+D G  PN +T++ +++ LCK G+  +A  +   MI  
Sbjct: 530 ALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGT 589

Query: 261 --QIG------------VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
              +G            + P+   Y  L+DG C   +V  A+EL   M SNGC  +   Y
Sbjct: 590 SDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIY 649

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI+G+CK  +++ A  ++  M   G  PTV TY +
Sbjct: 650 DALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTS 686



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 150/365 (41%), Gaps = 50/365 (13%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
            N++     ++  +   L    RL   G  P   TYN L+      G++  GF V   + 
Sbjct: 175 LNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMS 234

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
              F  D  T     + LC E R  +A  +  +   F  K D    T +I+GL       
Sbjct: 235 ELGFCTDKFTVGCFAQALCKEGRWSDALVMIER-EDF--KLDTVLCTQMISGLMEASLFD 291

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A++    M   +      C P+ +TY T+  G  K+  +   K +   M +E  NP+  
Sbjct: 292 EAISFLHRMRCNS------CIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPS 345

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN------------- 246
            + SL+  +C A D+  A  L   M   G  P  V +N+ +  +C               
Sbjct: 346 LFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAE 405

Query: 247 ----------------------------GKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
                                       GK D+A ++++LM++ G  PD S Y+ ++   
Sbjct: 406 KVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFL 465

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   +V +A  LF  M+S G + DV++Y ILI+ +CK   IE A S + EM S G  P+V
Sbjct: 466 CEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSV 525

Query: 339 VTYNT 343
           VTY  
Sbjct: 526 VTYTA 530



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 141/334 (42%), Gaps = 30/334 (8%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           +D  +S   R+      P++ TY  L+  F K  ++     ++  ++     P+   F S
Sbjct: 290 FDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNS 349

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI-------VALNLF 145
           L+   C       A  L  ++   GC P    Y   I  +C +G  +       +A  ++
Sbjct: 350 LVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSIC-SGEELPSPDLLALAEKVY 408

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
           EEM          C  + +  +     LC  G  DKA ++   M  +   PD  TY+ +I
Sbjct: 409 EEM------LASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVI 462

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
              C A    +A  LF EM   GV P+V T+ ++++  CK G +++A    + M  +G  
Sbjct: 463 TFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCS 522

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           P    Y  L+  +  T +V +A ++F  M   GC  +  +Y  L++G CK  E + A  +
Sbjct: 523 PSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEV 582

Query: 326 YSEML----------------SKGIRPTVVTYNT 343
           Y++M+                +  I P VVTY  
Sbjct: 583 YAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGA 616



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 126/286 (44%), Gaps = 42/286 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   + K++  D  + +  ++      P++ TY  +I+  C++G       +
Sbjct: 679 PTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKL 738

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    P+ VT+TSLI GL    ++  +  LFT++   GC P+  TY  LIN  C 
Sbjct: 739 LSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCA 798

Query: 135 TG-----HT----------------------------IVALNLFEEMANGNGEFGVVCKP 161
            G     H+                            I +L L EE+   +G   +    
Sbjct: 799 AGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEEL-ESHGMVSI---- 853

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV---TYTSLIRGFCYANDWNEAK 218
            A  Y  + D   K G ++KA EL  +M + + + ++    TYTSLI+  C A+   +A 
Sbjct: 854 -APVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAF 912

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
            L+ E+  +GV P +  F  ++  L K  K +EA +L   M   GV
Sbjct: 913 ELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGV 958



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 26/264 (9%)

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VLGR+L             +++  C      +A     +L+ FG +P   TY  L+  L 
Sbjct: 170 VLGRLL-----------NVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLA 218

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G   +   + +EM+    E G     D  T       LCKEG   +  +  + ++ E+
Sbjct: 219 TAGQMDMGFRVQKEMS----ELGFC--TDKFTVGCFAQALCKEG---RWSDALVMIERED 269

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              D V  T +I G   A+ ++EA      M      PNVVT+  ++    K  ++    
Sbjct: 270 FKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCK 329

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R++ +M+  G  P+ S++N+L+  +C       A +L   M   GC      Y I I   
Sbjct: 330 RIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSI 389

Query: 314 CKNKEIEG------ALSLYSEMLS 331
           C  +E+        A  +Y EML+
Sbjct: 390 CSGEELPSPDLLALAEKVYEEMLA 413


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 175/338 (51%), Gaps = 15/338 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG-------- 66
           P V +FN L   L K         L  ++   G+ P+L+T+NI +   C+ G        
Sbjct: 214 PDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRN 273

Query: 67  -RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
            RV      L +++   F PD +T+ S+I G C +  + +A  +       G KPD FTY
Sbjct: 274 SRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTY 333

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            +LING C+ G    A+ +F++        G   +P  + Y+T+  GL ++G +  A +L
Sbjct: 334 CSLINGFCKDGDPDRAMAVFKD------GLGKGLRPSIVLYNTLIKGLSQQGLILPALQL 387

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             +M +    P++ TY  +I G C     ++A  L  + + +G  P++ T+N +++  CK
Sbjct: 388 MNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCK 447

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
             K+D A+ ++  M   G+ PD   YNTL++G C  G+     E+F +ME  GC  ++ +
Sbjct: 448 QLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIIT 507

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y I+++  CK K++  A+ L  EM SKG++P VV++ T
Sbjct: 508 YNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGT 545



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 166/338 (49%), Gaps = 16/338 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVL---------SLFKRLNSIGLFPDLYTYNILINCFCKM 65
           P + +FNI    L +    D  +            +++ + G  PD  TYN +I+ +CK 
Sbjct: 249 PNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKK 308

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G V     VL   +   F PD  T+ SLI G C +     A A+F      G +P +  Y
Sbjct: 309 GMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLY 368

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            TLI GL + G  + AL L  EMA  NG     C P+  TY+ + +GLCK G V  A  L
Sbjct: 369 NTLIKGLSQQGLILPALQLMNEMAE-NG-----CLPNIWTYNLVINGLCKMGCVSDASHL 422

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
                 +   PD+ TY +LI G+C     + A  +   M  QG+ P+V+T+N ++N LCK
Sbjct: 423 VDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCK 482

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            GK +E   + + M + G  P+   YN ++D  C   +VN A +L   M+S G   DV S
Sbjct: 483 AGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVS 542

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSK-GIRPTVVTYN 342
           +G L  G+CK  +I+GA  L+  M  +  +  T  TYN
Sbjct: 543 FGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYN 580



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 175/373 (46%), Gaps = 50/373 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR------- 67
           P V S N +   L +  +++    ++ R+   G+  D+YTY I I  FCK  R       
Sbjct: 109 PSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRL 168

Query: 68  -------------VSPGFVVLG---------------RILRSCFTPDAVTFTSLIKGLCA 99
                        V+   VV G                +L  C  PD V F  L+  LC 
Sbjct: 169 LRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCK 228

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG---------HTIVALNLFEEMAN 150
           +  + E+  L  K+   G  P++FT+   + GLCR G           + A     +M N
Sbjct: 229 KGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVN 288

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
           G  E      PD +TY++I DG CK+G V  A  +      +   PD  TY SLI GFC 
Sbjct: 289 GGFE------PDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCK 342

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
             D + A  +F + + +G++P++V +N ++  L + G +  A +L+  M + G  P+   
Sbjct: 343 DGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWT 402

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           YN +++G C  G V+ A  L     + GC  D+F+Y  LI+GYCK  +++ A  + + M 
Sbjct: 403 YNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMW 462

Query: 331 SKGIRPTVVTYNT 343
           S+G+ P V+TYNT
Sbjct: 463 SQGMTPDVITYNT 475



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 163/332 (49%), Gaps = 44/332 (13%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PD +TY  LIN FCK G       V    L     P  V + +LIKGL  +  I+ A
Sbjct: 325 GFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPA 384

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE-MANGNGEFGVVCKPDAIT 165
             L  ++   GC P+++TY  +INGLC+ G    A +L ++ +A G       C PD  T
Sbjct: 385 LQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKG-------CPPDIFT 437

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+ DG CK+  +D A E+  +M  + + PDV+TY +L+ G C A    E   +F  M 
Sbjct: 438 YNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAME 497

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++G  PN++T+N+I++ LCK  K++EA  LL  M   G++PD   + TL  GFC  G ++
Sbjct: 498 EKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDID 557

Query: 286 RAKELFVSME------------------------------------SNGCMRDVFSYGIL 309
            A +LF  ME                                    ++GC  D ++Y ++
Sbjct: 558 GAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVV 617

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           I+G+CK   I        E + K   P++ T+
Sbjct: 618 IDGFCKMGNITQGYKFLLENMEKRFIPSLTTF 649



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 163/326 (50%), Gaps = 7/326 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L++       L L   +   G  P+++TYN++IN  CKMG VS    +
Sbjct: 363 PSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHL 422

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +   +     PD  T+ +LI G C + ++  A  +  ++ + G  PDV TY TL+NGLC+
Sbjct: 423 VDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCK 482

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G +   + +F+ M          C P+ ITY+ I D LCK   V++A +L  +MK + +
Sbjct: 483 AGKSEEVMEIFKAMEEKG------CTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGL 536

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEAS 253
            PDVV++ +L  GFC   D + A  LF  M  Q  V     T+N+I++   +   M+ A 
Sbjct: 537 KPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAM 596

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L  +M   G  PD   Y  ++DGFC  G + +  +  +       +  + ++G ++N  
Sbjct: 597 KLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCL 656

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVV 339
           C   ++  A+ +   ML KGI P  V
Sbjct: 657 CVKDKVHEAVGIIHLMLQKGIVPETV 682



 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 38/342 (11%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F+R++     P ++++N ++N   + G  +    V  R+       D  T+T  IK  C 
Sbjct: 99  FERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCK 158

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG-------- 151
            +R   A  L   +   GC  +   Y T++ GL  +G    A  LF+EM           
Sbjct: 159 TARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVA 218

Query: 152 -NGEFGVVCK--------------------PDAITYSTITDGLCKEGFVDK--------- 181
            N    V+CK                    P+  T++    GLC+EG +D+         
Sbjct: 219 FNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVE 278

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+E   KM +    PD +TY S+I G+C      +A  +  + + +G +P+  T+  ++N
Sbjct: 279 AEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLIN 338

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK+G  D A  + +  +  G+RP   +YNTL+ G    G +  A +L   M  NGC+ 
Sbjct: 339 GFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLP 398

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++++Y ++ING CK   +  A  L  + ++KG  P + TYNT
Sbjct: 399 NIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNT 440



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 126/254 (49%), Gaps = 5/254 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + ++N L     K    D+   +  R+ S G+ PD+ TYN L+N  CK G+      
Sbjct: 432 PPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVME 491

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +     TP+ +T+  ++  LC   ++ EA  L  ++++ G KPDV ++ TL  G C
Sbjct: 492 IFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFC 551

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A  LF  M         VC   A TY+ I     ++  ++ A +LF  MK+  
Sbjct: 552 KIGDIDGAYQLFRRMEKQYD----VCHTTA-TYNIIVSAFSEQLNMNMAMKLFSVMKNSG 606

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +PD  TY  +I GFC   +  +     +E M++   P++ TF  ++N LC   K+ EA 
Sbjct: 607 CDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAV 666

Query: 254 RLLELMIQIGVRPD 267
            ++ LM+Q G+ P+
Sbjct: 667 GIIHLMLQKGIVPE 680



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 131/299 (43%), Gaps = 50/299 (16%)

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
            +   +K    + ++ EA   F ++  + C P V ++  ++N L   G+   A  ++  M
Sbjct: 78  AYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRM 137

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
            +     GV  + D  TY+      CK      A  L   M +   + + V Y +++ G 
Sbjct: 138 RDR----GV--QSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGL 191

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL------------- 255
             + + + A+ LF EM+ + + P+VV FN +++ LCK G + E+ RL             
Sbjct: 192 YDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNL 251

Query: 256 -------------------------------LELMIQIGVRPDASVYNTLMDGFCLTGRV 284
                                          L  M+  G  PD   YN+++DG+C  G V
Sbjct: 252 FTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMV 311

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A  +       G   D F+Y  LING+CK+ + + A++++ + L KG+RP++V YNT
Sbjct: 312 QDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNT 370



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 14/163 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +F  M + +       ++NI+    ++  + +  + LF  + + G  PD YTY ++I+
Sbjct: 560 YQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVID 619

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FCKMG ++ G+  L   +   F P   TF  ++  LC + ++ EA  +   +   G  P
Sbjct: 620 GFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVP 679

Query: 121 D------------VFTYTTLINGLCRTGHTIVALNLFEEMANG 151
           +            V     L+  L + GH  +A   +E + +G
Sbjct: 680 ETVNTIFEADKKVVAAPKILVEDLLKKGH--IAYYTYELLYDG 720


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 181/359 (50%), Gaps = 36/359 (10%)

Query: 15  PPVCSFNILFGCLAKNKH----------------------YDTVLSLFKRLN-------- 44
           P V ++NIL   L KN                        Y TV+S   +L         
Sbjct: 182 PNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL 241

Query: 45  SIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104
           SI   P++  YN LIN FC+  +V   F++LG+++     P+ +T++++I  L     + 
Sbjct: 242 SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVE 301

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
            A A++ K+   GC P+V+T+T+L+ G    G  + ALN++  MA    E      P+ +
Sbjct: 302 LALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFE------PNVV 355

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            Y+T+  GLC  G + +A  +  KM+    +P+V TY +LI GF  A D   A  ++ +M
Sbjct: 356 AYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKM 415

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           M  G  PNVV +  ++N LC++    +A  L+E M      P+   +NT + G C +GRV
Sbjct: 416 MTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRV 475

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A  LF  ME  GC  ++ +Y  +++G  K   I+ AL L +EM  KG+   +VTYNT
Sbjct: 476 ECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNT 534



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 165/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L     +      V  L  ++   G+ P++ TY+ +I+    +G V     V
Sbjct: 247 PNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAV 306

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++     +P+  TFTSL+KG     R++EA  ++ ++   G +P+V  Y TLI+GLC 
Sbjct: 307 WAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCS 366

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+++  +M   NG     C P+  TY  + DG  K G +  A E++ KM     
Sbjct: 367 HGKMGEAVSVSSKMER-NG-----CSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGC 420

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV YTS++   C ++ +++A  L  +M      PN VTFN  +  LC +G+++ A  
Sbjct: 421 IPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAIN 480

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M Q G  P+   YN ++DG     R+  A EL   ME  G   ++ +Y  +  G+C
Sbjct: 481 LFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFC 540

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              + E AL L  +ML  G++P  +TYNT
Sbjct: 541 NVGKFEEALKLLGKMLVGGVKPDAITYNT 569



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 167/308 (54%), Gaps = 7/308 (2%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L+++ R+   G  P++  YN LI+  C  G++     V  ++ R+  +P+  T+ +LI G
Sbjct: 339 LNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDG 398

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
                 ++ A+ ++ K+   GC P+V  YT+++N LCR+     A +L E+M+  N    
Sbjct: 399 FAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDN---- 454

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
             C P+ +T++T   GLC  G V+ A  LF +M+    +P++ TY  ++ G    N   E
Sbjct: 455 --CPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKE 512

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  L  EM ++G++ N+VT+N I    C  GK +EA +LL  M+  GV+PDA  YNTL  
Sbjct: 513 ALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTY 572

Query: 277 GFCLTGRVNRAKELFVSMESNG-CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            +C+ G+V  A +L   + + G  + +V +Y  L+ G C    +E A+    +ML++GI 
Sbjct: 573 AYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGIC 632

Query: 336 PTVVTYNT 343
               T+N 
Sbjct: 633 LNAATWNA 640



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 158/313 (50%), Gaps = 17/313 (5%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           +  L +F R+   G  P +  YN L++      R      +   + R    P+  T+  L
Sbjct: 131 EQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNIL 190

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           +K LC  +R+  A  L  ++   GC+PDV +YTT+I+ + + G         EE      
Sbjct: 191 LKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKV-------EEAR---- 239

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL---KMKDENINPDVVTYTSLIRGFCY 210
           E  +  +P+   Y+ + +G C+E    K KE+FL   +M ++ I+P+V+TY+++I     
Sbjct: 240 ELSIRFQPNVSVYNALINGFCRE---YKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSG 296

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
             +   A  ++ +M  +G  PNV TF  +M      G++ EA  +   M + G  P+   
Sbjct: 297 IGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVA 356

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           YNTL+ G C  G++  A  +   ME NGC  +V +YG LI+G+ K  ++ GA  ++++M+
Sbjct: 357 YNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMM 416

Query: 331 SKGIRPTVVTYNT 343
           + G  P VV Y +
Sbjct: 417 TNGCIPNVVVYTS 429



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 142/300 (47%), Gaps = 42/300 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L  +      +S+  ++   G  P++ TY  LI+ F K G +     +
Sbjct: 352 PNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEI 411

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ +   P+ V +TS++  LC  S   +A +L  K+    C P+  T+ T I GLC 
Sbjct: 412 WNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCC 471

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A+NLF +M     ++G  C P+  TY+ + DGL KE  + +A EL  +M+++ +
Sbjct: 472 SGRVECAINLFCQME----QYG--CSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGM 525

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++VTY ++  GFC    + EA  L  +M+  GV+P+ +T+N +    C  GK+  A +
Sbjct: 526 ELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQ 585

Query: 255 LLELMI---------------------QIGVRP---------------DASVYNTLMDGF 278
           LL+ +                      QIGV                 +A+ +N L+ G 
Sbjct: 586 LLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGL 645



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 16/256 (6%)

Query: 91  TSLIKGLCAESRIMEAAALFTKL---RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           + ++  L  E+ I+ A+  F  +   +AF  +    TY  +I  L R         L ++
Sbjct: 47  SDVVMRLRTETDIVLASNYFRSIANSKAF--QHTQLTYQIMIEKLGRECDVDGVQYLLQQ 104

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M       G+ C  D   +  + +   + G  ++A ++F ++++    P V  Y  L+  
Sbjct: 105 MKLE----GISCSED--LFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDA 158

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
               N +   + ++  M   G +PNV T+N+++  LCKN ++D A +LL  M   G  PD
Sbjct: 159 MLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPD 218

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y T++      G+V  A+EL +  + N     V  Y  LING+C+  +++    L  
Sbjct: 219 VVSYTTVISSMSKLGKVEEARELSIRFQPN-----VSVYNALINGFCREYKVKEVFLLLG 273

Query: 328 EMLSKGIRPTVVTYNT 343
           +M+ KGI P V+TY+T
Sbjct: 274 QMVEKGIDPNVITYST 289



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 5/195 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN     L  +   +  ++LF ++   G  P++ TYN +++   K  R+     
Sbjct: 456 PPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALE 515

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++  +       + VT+ ++  G C   +  EA  L  K+   G KPD  TY TL    C
Sbjct: 516 LVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYC 575

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A+ L ++++ G G++     P+   Y+++  G+C +  V++A     KM +E 
Sbjct: 576 MQGKVKTAIQLLDKLSAG-GKW----VPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEG 630

Query: 194 INPDVVTYTSLIRGF 208
           I  +  T+ +L+RG 
Sbjct: 631 ICLNAATWNALVRGL 645


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 184/356 (51%), Gaps = 21/356 (5%)

Query: 3   IFDYMLRMHPS---------------PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG 47
           + D M++++P+               P  V  FNIL     K  +      +F  +    
Sbjct: 211 LLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRS 270

Query: 48  LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA 107
           L P + ++N LIN +CK+G +  GF +   + +S   PD  T+++LI  LC E+++  A 
Sbjct: 271 LRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAH 330

Query: 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
            LF ++   G  P+   +TTLI+G  R G   +    +++M +         +PD + Y+
Sbjct: 331 RLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKG------LQPDIVLYN 384

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           T+ +G CK G +  A+ +   M    + PD VTYT+LI GFC   D + A  +  EM   
Sbjct: 385 TLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQN 444

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G++ + V F+ ++  +CK G++ +A R L  M++ G++PD   Y  +MD FC  G     
Sbjct: 445 GIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTG 504

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L   M+S+G + +V +Y +L+NG CK  +++ A  L   ML+ G+ P  +TYNT
Sbjct: 505 FKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNT 560



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 146/285 (51%), Gaps = 9/285 (3%)

Query: 60  NCFCKMGRVSPGFVVLG---RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           N   +M +++P   V G    IL + F  +   F  L+   C E  I +A  +F ++   
Sbjct: 210 NLLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKR 269

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
             +P V ++ TLING C+ G+  V   L   M           +PD  TYS + + LCKE
Sbjct: 270 SLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSR------TRPDVFTYSALINALCKE 323

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
             +D A  LF +M +  + P+ V +T+LI G       +  K  + +M+ +G+QP++V +
Sbjct: 324 NKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLY 383

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           N ++N  CKNG +  A  +++ MI+ G+RPD   Y TL+DGFC  G V+ A E+   M+ 
Sbjct: 384 NTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQ 443

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           NG   D   +  LI G CK   +  A     EML  G++P  VTY
Sbjct: 444 NGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTY 488



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 157/329 (47%), Gaps = 9/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K  + D    L   +      PD++TY+ LIN  CK  ++     +
Sbjct: 273 PTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRL 332

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P+ V FT+LI G     +I      + K+ + G +PD+  Y TL+NG C+
Sbjct: 333 FYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCK 392

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A N+ + M           +PD +TY+T+ DG C+ G VD A E+  +M    I
Sbjct: 393 NGDLVAARNIVDGMIRRG------LRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGI 446

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V +++LI G C      +A+    EM+  G++P+ VT+ ++M+  CK G      +
Sbjct: 447 ELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFK 506

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M   G  P+   YN L++G C  G++  A  L  +M + G + D  +Y  L+ G+ 
Sbjct: 507 LLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHH 566

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++     A   Y +    GI   + +Y +
Sbjct: 567 RH---ANASKHYKQKPEIGIVADLASYKS 592


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 169/316 (53%), Gaps = 6/316 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 115 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPS 174

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+         LF+
Sbjct: 175 VVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFD 234

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD+VTY +LI 
Sbjct: 235 EMLD----XGLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIY 288

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A      MI+  +R 
Sbjct: 289 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRL 348

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 349 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLM 408

Query: 327 SEMLSKGIRPTVVTYN 342
            EM   G  P+VVTYN
Sbjct: 409 KEMQRDGYVPSVVTYN 424



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G ++  F 
Sbjct: 137 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFR 196

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +   LF ++   G  P+  T+TTLI+G C
Sbjct: 197 LKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHC 256

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD +TY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 257 KNGRVDLAMEIYKQMLSQS------LSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKG 310

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 311 LKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAE 370

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G +  V +Y +L+NG
Sbjct: 371 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 100/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +    CKEG +  A+ +F  +    + P VV++ +L+ G+    D NE   L   M 
Sbjct: 143 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQ 202

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+ + L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVD 262

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 263 LAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 320



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 90/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S I     + GF+  A E +   K+        T   ++        +     
Sbjct: 67  RSDIYVFSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 126

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+  CK G++  A  + + + + G+RP    +NTLM+G+ 
Sbjct: 127 FYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 186

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +N    L  +M+++G   DV++Y +LING CK  +++    L+ EML  G+ P  V
Sbjct: 187 KLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGV 246

Query: 340 TYNT 343
           T+ T
Sbjct: 247 TFTT 250


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 169/362 (46%), Gaps = 41/362 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN     L +    +T L LF  + S G  PD+ +Y I+I+  C   R      V
Sbjct: 117 PDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKV 176

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++    +PD     +L+ GLC+  R+  A  L   +   G K +   Y  LI+G CR
Sbjct: 177 WRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCR 236

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ +   M+         C PD +TY+ + +  C+EG VD+A  L   M+   +
Sbjct: 237 MGRVDKAMKIKAFMSRTG------CVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGV 290

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD---------------------------- 226
            PD+ +Y  L++GFC AN  + A  + +E M                             
Sbjct: 291 EPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYE 350

Query: 227 -------QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
                  +G++P++VTFN++++   + G      +LL+ M ++ V PD   Y  ++D  C
Sbjct: 351 LFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLC 410

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G+V+ A  +F  M  NG   DV SY  L+NG+CK   +  A+ L+ EM SKG+ P  V
Sbjct: 411 KNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEV 470

Query: 340 TY 341
           TY
Sbjct: 471 TY 472



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 130/260 (50%), Gaps = 6/260 (2%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           F PD   F + +  LC ++R+  A  LF  + + G  PDV +YT +I+ LC       A 
Sbjct: 115 FVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAA 174

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            ++  + +          PD      +  GLC  G VD A EL + +    +  + + Y 
Sbjct: 175 KVWRRLIDKG------LSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYN 228

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           +LI GFC     ++A  +   M   G  P++VT+N+++N  C+ G +DEA RL+E M + 
Sbjct: 229 ALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERS 288

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           GV PD   YN L+ GFC    V+RA  + V       M DV SY  +I  +CK +     
Sbjct: 289 GVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKG 348

Query: 323 LSLYSEMLSKGIRPTVVTYN 342
             L+ EM  KGIRP +VT+N
Sbjct: 349 YELFEEMCGKGIRPDMVTFN 368



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 6/263 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NIL     +    D  + L + +   G+ PDLY+YN L+  FCK   V    ++
Sbjct: 257 PDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLM 316

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +   +++    D V++ ++I   C   R  +   LF ++   G +PD+ T+  LI+   R
Sbjct: 317 MVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLR 376

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T V   L +EM        +   PD I Y+ + D LCK G VD A  +F  M +  +
Sbjct: 377 EGSTHVVKKLLDEMTK------MRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGV 430

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPDV++Y +L+ GFC  +   +A  LF EM  +G+ P+ VT+ +I+  L +  K+  A R
Sbjct: 431 NPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACR 490

Query: 255 LLELMIQIGVRPDASVYNTLMDG 277
           + + M++ G   +  +  TL++ 
Sbjct: 491 VWDQMMERGFTLNRHLSETLVNA 513



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 145/294 (49%), Gaps = 12/294 (4%)

Query: 55  YNILINCFCKMGRVSPGFVVLGR-ILRSCFTPDAVTFTSLIKGLCAESRIME---AAALF 110
           YN  I    +  R+        R ++   F+    T++  I  LC+    +      +L 
Sbjct: 48  YNRFIGVLLRHSRLHLAHHYYRRHVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLL 107

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
             + + G  PD++ + T +N LCR      AL LF  M +   +      PD ++Y+ I 
Sbjct: 108 LDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRD------PDVVSYTIII 161

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           D LC     D+A +++ ++ D+ ++PD     +L+ G C     + A  L + ++  GV+
Sbjct: 162 DALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVK 221

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            N + +N +++  C+ G++D+A ++   M + G  PD   YN L++  C  G V+ A  L
Sbjct: 222 VNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRL 281

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGA-LSLYSEMLSKGIRPTVVTYNT 343
             +ME +G   D++SY  L+ G+CK   ++ A L +   M +KG+   VV+YNT
Sbjct: 282 VETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGM-CDVVSYNT 334



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M +M   P  +  +  +   L KN   D   S+F+ +   G+ PD+ +YN L+N F
Sbjct: 386 LLDEMTKMRVLPDCIF-YTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGF 444

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  RV     +   +      PD VT+  ++ GL    +I  A  ++ ++   G   + 
Sbjct: 445 CKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNR 504

Query: 123 FTYTTLINGL 132
               TL+N +
Sbjct: 505 HLSETLVNAI 514


>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
          Length = 618

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 180/329 (54%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + N +   L K      V  LF  +   G+ P + TYN LIN     G V+  + V
Sbjct: 136 PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNTLINACRHQGDVAKAWEV 195

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+ VT+T++I  LC E  I +A  LF +++  G +P+++TY  L++   +
Sbjct: 196 WDQMVARRIDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFK 255

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL  + ++     + G+V  P+ + ++T+ DGLCK   + +AK +FL M    +
Sbjct: 256 RDNIKHALVFYYDLL----KCGLV--PNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEV 309

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V  Y SLI G   +    EA   F E++ + ++P+  T ++++  LC  G+M  A+R
Sbjct: 310 APTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATR 369

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            LE+M Q G+  +A+ YN L+D +C +G ++ A      M   G   +V +Y  LI+G+ 
Sbjct: 370 FLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHS 429

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           KN E+E A+++Y+EM++KG+ P VVTY  
Sbjct: 430 KNGEMEIAMAIYTEMVAKGVEPNVVTYTA 458



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 170/393 (43%), Gaps = 70/393 (17%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L +         LF  +   G+ P+LYTYN L++   K   +    V 
Sbjct: 206 PNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVF 265

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+    P+ V FT+LI GLC  +RI EA  +F  +  +   P V  Y +LI+G  R
Sbjct: 266 YYDLLKCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFR 325

Query: 135 TGHTIVALNLFEEMANGN------------------GEFGVVCK-----------PDAIT 165
           +G+   AL  F+E+                      G+  V  +            +A  
Sbjct: 326 SGYAQEALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAA 385

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ + D  CK G +D+A     +M +  + P+VVTY+SLI G     +   A  ++ EM+
Sbjct: 386 YNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMV 445

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV- 284
            +GV+PNVVT+  +++   KNG MD A  L + M + G+  +A   + L+DG C   RV 
Sbjct: 446 AKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQ 505

Query: 285 ----------------------------------------NRAKELFVSMESNGCMRDVF 304
                                                   N A   F  M  +G + D F
Sbjct: 506 DAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRF 565

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           +Y ++I G C    +  A+ LY++M+  G++PT
Sbjct: 566 TYTLVIRGLCMLGYVLNAMMLYADMVKVGVKPT 598



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 152/325 (46%), Gaps = 9/325 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +  +L   L++    D  LS+F RL  +   P L   N +++   K   ++  + +   +
Sbjct: 108 ALGVLVIALSQMALPDEALSVFGRLREL---PALPACNAILDGLVKAHMLARVWELFDEM 164

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L     P  VT+ +LI     +  + +A  ++ ++ A    P+V TYTT+I  LC     
Sbjct: 165 LGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCI 224

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LF EM           +P+  TY+ +     K   +  A   +  +    + P+ 
Sbjct: 225 GDAEGLFLEMKEAG------MRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPND 278

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V +T+LI G C AN   EAK +F++M    V P V  +N +++   ++G   EA    + 
Sbjct: 279 VIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQE 338

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           +I+  +RPD    + ++ G C  G++  A      M+ +G   +  +Y +LI+ YCK+  
Sbjct: 339 IIRKELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGN 398

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ AL   + M   G+ P VVTY++
Sbjct: 399 LDEALVTCTRMSEVGVEPNVVTYSS 423


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 169/325 (52%), Gaps = 7/325 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L   L K       + LFK    +   PD +T+NILI   C++G V   F V   + 
Sbjct: 146 YNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDME 205

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTGHT 138
                PD VT+ +LI GLC  + +     LF ++++   C PD+ TYT++I+G C++G  
Sbjct: 206 SFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKM 265

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A NLFEEM           +P+ IT++ + DG  K G + +A+ ++ KM   + + DV
Sbjct: 266 KEASNLFEEMMRSG------IQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADV 319

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VT+TSLI G+C A   N     +  M  + V P V T+ V++N LCK  +++EA   L  
Sbjct: 320 VTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQ 379

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           +    + P   +YN ++DGFC  G V+    +   ME   C  D  ++ ILI G+C    
Sbjct: 380 IKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGR 439

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           +  A+++++ ML+    P  +T N+
Sbjct: 440 MFEAINIFNRMLATRCAPDNITVNS 464



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 164/325 (50%), Gaps = 7/325 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N+L   L +  H+D V  +F  + S G  PD      L+    +         +L  +
Sbjct: 75  TYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEV 134

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                  ++  + +L+  L  ++++ EA  LF +       PD +T+  LI GLCR G  
Sbjct: 135 QGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGV 194

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-NINPD 197
             A  +F++M +    FG  C PD +TY+T+ +GLCK   V +  ELF +++   + +PD
Sbjct: 195 DRAFEVFKDMES----FG--CLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPD 248

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           +VTYTS+I GFC +    EA  LF EMM  G+QPNV+TFNV+++   K G + EA  +  
Sbjct: 249 IVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYR 308

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M       D   + +L+DG+C  G+VN   + +  M++      V++Y +LIN  CK  
Sbjct: 309 KMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKEN 368

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYN 342
            +  A     ++ +  I P    YN
Sbjct: 369 RLNEARDFLGQIKNSSIIPKPFMYN 393



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 154/300 (51%), Gaps = 7/300 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SPP   +FNIL   L +    D    +FK + S G  PD+ TYN LIN  CK   V  G 
Sbjct: 174 SPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGC 233

Query: 73  VVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
            +   I  RS  +PD VT+TS+I G C   ++ EA+ LF ++   G +P+V T+  LI+G
Sbjct: 234 ELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDG 293

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
             + G+   A  ++ +MA  +      C  D +T++++ DG C+ G V+   + +  MK 
Sbjct: 294 FGKIGNIAEAEAMYRKMAYFD------CSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKT 347

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
            N++P V TY  LI   C  N  NEA+    ++ +  + P    +N +++  CK G +DE
Sbjct: 348 RNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDE 407

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
            + +L+ M +    PD   +  L+ G C+ GR+  A  +F  M +  C  D  +   LI+
Sbjct: 408 GNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLIS 467



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 1/180 (0%)

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY+ +   LC+ G  D    +F  M  +   PD      L+     A+D++  K L  E+
Sbjct: 75  TYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEV 134

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
             + V+ N   +N +++ L K  ++ EA  L +  + +   PD   +N L+ G C  G V
Sbjct: 135 QGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGV 194

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG-IRPTVVTYNT 343
           +RA E+F  MES GC+ DV +Y  LING CK  E++    L+ E+ S+    P +VTY +
Sbjct: 195 DRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTS 254



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 1/168 (0%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  +++     P V ++ +L   L K    +       ++ +  + P  + YN +I+ FC
Sbjct: 341 FWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFC 400

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G V  G V+L  +      PD VTFT LI G C + R+ EA  +F ++ A  C PD  
Sbjct: 401 KAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNI 460

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
           T  +LI+ L + G    A  +  +MA  +   G+     AI   T TD
Sbjct: 461 TVNSLISCLLKAGMPNEAYRI-RKMALEDRNLGLSSFEKAIPLRTNTD 507


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S N L    AK    D V   FK +   G  P ++TYNI+I+C  K G +     +
Sbjct: 96  PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGL 155

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD VT+ S+I G     R+ +    F ++++  C+PDV TY +LIN  C+
Sbjct: 156 FEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCK 215

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G     L  + EM           KP+ ++YST+ D  CKE  + +A + ++ M+    
Sbjct: 216 SGKLPKGLEFYREMKQSG------LKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGH 269

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TYTSL+   C   + ++A  L  EM++ GV+ NVVT+  +++ LC   +M EA +
Sbjct: 270 VPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEK 329

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+  GV P+ + YN L+ GF     ++RA EL   ++  G   D+  YG  I G C
Sbjct: 330 LFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLC 389

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++IE A  + +EM   GI+   + Y T
Sbjct: 390 GLEKIEAAKVVMNEMQENGIKANTLIYTT 418



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 167/328 (50%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K    D  +  F+ + S+   PD+ TYN LINCFCK G++  G   
Sbjct: 166 PDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEF 225

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +S   P+ V++++L+   C E  + +A   +  +R  G  P+ FTYT+L++  C+
Sbjct: 226 YREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCK 285

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L  EM     E+ VV      TY+ + DGLC    + +A++LF KM    +
Sbjct: 286 IGNLSDAFRLANEMLEVGVEWNVV------TYTALIDGLCDAERMKEAEKLFGKMVTAGV 339

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++ +Y +LI GF  A + + A  L  E+  +G+QP+++ +   +  LC   K++ A  
Sbjct: 340 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKV 399

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           ++  M + G++ +  +Y TLMD +  +G       L   M+       V ++ +LI+G C
Sbjct: 400 VMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLC 459

Query: 315 KNKEIEGALSLYSEMLSK-GIRPTVVTY 341
           KNK +  A+  +  M +  G++P    Y
Sbjct: 460 KNKLVSKAIDYFGRMSNDFGLQPNAAVY 487



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    F+ LF  L      +     F ++    +FP   + N L++ F K+G+       
Sbjct: 61  PGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 120

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++ +   P   T+  +I  +  E  I  A  LF +++  G  PD  TY ++I+G  +
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G     +  FEEM +      + C+PD ITY+++ +  CK G + K  E + +MK   +
Sbjct: 181 VGRLDDTVYFFEEMKS------MSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGL 234

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV+Y++L+  FC  +   +A   +++M   G  PN  T+  +++  CK G + +A R
Sbjct: 235 KPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFR 294

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+++GV  +   Y  L+DG C   R+  A++LF  M + G + ++ SY  LI+G+ 
Sbjct: 295 LANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFV 354

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K K ++ AL L +E+  +GI+P ++ Y T
Sbjct: 355 KAKNMDRALELLNELKGRGIQPDLLLYGT 383



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 162/329 (49%), Gaps = 6/329 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V ++NI+  C+ K    +    LF+ +   GL PD  TYN +I+ + K+GR+    
Sbjct: 129 SKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTV 188

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
                +      PD +T+ SLI   C   ++ +    + +++  G KP+V +Y+TL++  
Sbjct: 189 YFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAF 248

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+      A+  + +M        V   P+  TY+++ D  CK G +  A  L  +M + 
Sbjct: 249 CKEDMMQQAIKFYVDMRR------VGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEV 302

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            +  +VVTYT+LI G C A    EA+ LF +M+  GV PN+ ++N +++   K   MD A
Sbjct: 303 GVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRA 362

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             LL  +   G++PD  +Y T + G C   ++  AK +   M+ NG   +   Y  L++ 
Sbjct: 363 LELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDA 422

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           Y K+      L L  EM       TVVT+
Sbjct: 423 YFKSGNPTEGLHLLEEMQELDHEVTVVTF 451



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 159/361 (44%), Gaps = 42/361 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++ L     K       +  +  +  +G  P+ +TY  L++  CK+G +S  F +
Sbjct: 236 PNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRL 295

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L      + VT+T+LI GLC   R+ EA  LF K+   G  P++ +Y  LI+G  +
Sbjct: 296 ANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVK 355

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL L  E+       G   +PD + Y T   GLC    ++ AK +  +M++  I
Sbjct: 356 AKNMDRALELLNELK------GRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGI 409

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMM----------------------------- 225
             + + YT+L+  +  + +  E   L  EM                              
Sbjct: 410 KANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAID 469

Query: 226 -------DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
                  D G+QPN   +  +++ LCK  ++  A+ L E M Q G+ PD + Y +LMDG 
Sbjct: 470 YFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGN 529

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
              G +  A  L   M   G   D+ +Y  L+ G+ +  +++ A S   EM+ + I P  
Sbjct: 530 LKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDE 589

Query: 339 V 339
           V
Sbjct: 590 V 590



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 96/186 (51%)

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           VC P    +  +   L   G +++A + F KMK   + P   +   L+  F      +  
Sbjct: 58  VCVPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGV 117

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           K  F +M+  G +P V T+N++++ + K G ++ A  L E M   G+ PD   YN+++DG
Sbjct: 118 KRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDG 177

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           +   GR++     F  M+S  C  DV +Y  LIN +CK+ ++   L  Y EM   G++P 
Sbjct: 178 YGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPN 237

Query: 338 VVTYNT 343
           VV+Y+T
Sbjct: 238 VVSYST 243



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 123/283 (43%), Gaps = 42/283 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N L     K K+ D  L L   L   G+ PDL  Y   I   C + ++    VV
Sbjct: 341 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVV 400

Query: 75  LGRILRSCFTPDA-----------------------------------VTFTSLIKGLCA 99
           +  +  +    +                                    VTF  LI GLC 
Sbjct: 401 MNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCK 460

Query: 100 ESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
              + +A   F ++   FG +P+   YT +I+GLC+      A  LFE+MA    + G+V
Sbjct: 461 NKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMA----QEGLV 516

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
             PD   Y+++ DG  K+G + +A  L  KM +  +  D++ YTSL+ GF   N   +A+
Sbjct: 517 --PDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKAR 574

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
               EM+ + + P+ V    ++ +  + G +DEA  L   +++
Sbjct: 575 SFLEEMIGEEILPDEVLCIGVLKKHYELGCIDEAVGLQSYLMK 617


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 165/316 (52%), Gaps = 6/316 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V++ +L+ G      + E   L + + A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFD 236

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM            P+ +T++T+ DG CK G VD A E++ +M  +++ PD++TY +LI 
Sbjct: 237 EM------LVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 290

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A  L  EM  +G+QP+ +T+  +++  CK G +D A    + MIQ  +R 
Sbjct: 291 GLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   D  +Y ++IN +CK  ++     L 
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 410

Query: 327 SEMLSKGIRPTVVTYN 342
            EM   G  P+VVTYN
Sbjct: 411 KEMQRDGHVPSVVTYN 426



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 167/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC E+++ +A  LF ++      P+  T+TTLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A +L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PDA  Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 100/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 153 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 212

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A++L + M+   + P+   + TL+DG C  GRV+ A E++  
Sbjct: 213 YTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 272

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 273 MLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTT 322



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 113/237 (47%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +
Sbjct: 16  RHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVF 75

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +  G  + GF+  A E +   ++  +     T   ++        +      + E+++
Sbjct: 76  SGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 135

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++ 
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   DV++Y +LING CK  +++ A  L+ EML K + P  VT+ T
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTT 252


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 176/352 (50%), Gaps = 29/352 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S N L   LAK +  +   +L+K++ + G+ P L T+N LIN   K G+V    ++L +I
Sbjct: 165 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 224

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +   +PD  T+TSLI G C    +  A  +F ++   GC P+  TY+TLINGLC  G  
Sbjct: 225 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 284

Query: 139 IVALNLFEEMANGNGEFGVV-----------------------------CKPDAITYSTI 169
             AL++ EEM     E  V                              C+P+  TY+ +
Sbjct: 285 DEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTAL 344

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GL + G ++ A  L+ KM  E + P+ VTY +LI   C    ++ A  +F  M   G 
Sbjct: 345 ISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGS 404

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             N  T+N I+  LC  G +++A  L E M+++G  P    YNTL++G+   G VN A  
Sbjct: 405 LANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAAR 464

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           L   M+ NGC  D ++Y  L++G+ K  ++E A   + EM+  G+ P  V+Y
Sbjct: 465 LLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSY 516



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 165/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L++    +  + L+ ++   GL P+  TYN LIN  C  GR S    +
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       +  T+  +IKGLC    I +A  LF K+   G  P V TY TLING   
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 455

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L + M   NG     C+PD  TY+ +  G  K G ++ A   F +M +  +
Sbjct: 456 KGNVNNAARLLDLMKE-NG-----CEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 509

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NP+ V+YT+LI G       + A  L   M + G  PNV ++N ++N L K  +  EA +
Sbjct: 510 NPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEK 569

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M++ G+ P+   Y TL+DG C  GR   A ++F  ME   C+ ++++Y  LI G C
Sbjct: 570 ICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC 629

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  + + A  L  EM  KG+ P  VT+ +
Sbjct: 630 QEGKADEAEILLKEMERKGLAPDEVTFTS 658



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 165/308 (53%), Gaps = 6/308 (1%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
           V      ++ +G    LY+ N L+    K   V     +  ++L S   P  +TF +LI 
Sbjct: 147 VADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLIN 206

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
            L  + ++ EA  + +++  +   PDVFTYT+LI G CR  +  +A  +F+ M       
Sbjct: 207 ILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEG--- 263

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
              C P+++TYST+ +GLC EG VD+A ++  +M ++ I P V TYT  I   C      
Sbjct: 264 ---CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 320

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA  L   M  +G +PNV T+  +++ L + GK++ A  L   M++ G+ P+   YN L+
Sbjct: 321 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 380

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +  C+ GR + A ++F  ME +G + +  +Y  +I G C   +IE A+ L+ +ML  G  
Sbjct: 381 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 440

Query: 336 PTVVTYNT 343
           PTVVTYNT
Sbjct: 441 PTVVTYNT 448



 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 167/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L     + T L +F  +   G   +  TYN +I   C  G +    V+
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L+    P  VT+ +LI G   +  +  AA L   ++  GC+PD +TY  L++G  +
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A   F+EM     E G+   P+ ++Y+ + DG  K+G VD A  L  +M++   
Sbjct: 491 WGKLESASFYFQEMV----ECGL--NPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGC 544

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NP+V +Y ++I G    N ++EA+ +  +M++QG+ PNV+T+  +++ LC+NG+   A +
Sbjct: 545 NPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFK 604

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M +    P+   Y++L+ G C  G+ + A+ L   ME  G   D  ++  LI+G+ 
Sbjct: 605 IFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFV 664

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               I+ A  L   M+  G +P   TY+
Sbjct: 665 VLGRIDHAFLLLRRMVDMGCKPNYRTYS 692



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 161/313 (51%), Gaps = 7/313 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF +M   H S     ++N +   L      +  + LF+++  +G  P + TYN LIN +
Sbjct: 395 IFHWM-EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 453

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G V+    +L  +  +   PD  T+  L+ G     ++  A+  F ++   G  P+ 
Sbjct: 454 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 513

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +YT LI+G  + G   +AL+L + M     E G  C P+  +Y+ + +GL KE    +A
Sbjct: 514 VSYTALIDGHSKDGKVDIALSLLKRME----EMG--CNPNVESYNAVINGLSKENRFSEA 567

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +++  KM ++ + P+V+TYT+LI G C       A  +F +M  +   PN+ T++ ++  
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+ GK DEA  LL+ M + G+ PD   + +L+DGF + GR++ A  L   M   GC  +
Sbjct: 628 LCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPN 687

Query: 303 VFSYGILINGYCK 315
             +Y +L+ G  K
Sbjct: 688 YRTYSVLLKGLQK 700



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 156/322 (48%), Gaps = 24/322 (7%)

Query: 29  KNKHYDTVLSLFKRLNSIGLF------PDLYTYNILINCFCKMGRVSPGFVVLGRILRS- 81
           K  H   ++++ K   S+  F         Y +N+  NCF  M         L R++R  
Sbjct: 74  KAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHNM--NCFISM---------LNRLVRDR 122

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
            F P       +IK    E  I   A    ++   G    +++  TL+  L +      A
Sbjct: 123 VFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGA 182

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
            NL+++M N         +P  +T++T+ + L K+G V +A+ +  ++   +++PDV TY
Sbjct: 183 RNLYKQMLNSG------IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTY 236

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           TSLI G C   + + A  +F  M+ +G  PN VT++ ++N LC  G++DEA  +LE MI+
Sbjct: 237 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 296

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G+ P    Y   +   C       A EL   M+  GC  +V +Y  LI+G  +  ++E 
Sbjct: 297 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 356

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A+ LY +ML +G+ P  VTYN 
Sbjct: 357 AIGLYHKMLKEGLVPNTVTYNA 378



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 92/202 (45%), Gaps = 30/202 (14%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M+    +P PV S+  L    +K+   D  LSL KR+  +G  P++ +YN +IN   
Sbjct: 501 FQEMVECGLNPNPV-SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS 559

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K  R S    +  +++     P+ +T+T+LI GLC   R   A  +F  +    C P+++
Sbjct: 560 KENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLY 619

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMA---------------NGNGEFGVV---------- 158
           TY++LI GLC+ G    A  L +EM                +G    G +          
Sbjct: 620 TYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM 679

Query: 159 ----CKPDAITYSTITDGLCKE 176
               CKP+  TYS +  GL KE
Sbjct: 680 VDMGCKPNYRTYSVLLKGLQKE 701



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ L   L +    D    L K +   GL PD  T+  LI+ F  +GR+   F++
Sbjct: 616 PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLL 675

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--GCKP 120
           L R++     P+  T++ L+KGL  E  ++E   +F  +  +  GC P
Sbjct: 676 LRRMVDMGCKPNYRTYSVLLKGLQKECLLLE-EKIFPLVDNYFLGCNP 722


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 172/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   +K +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKFXXPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 217 VLINGLCKEXKMDDANELFDEMLVK----GLV--PNXVTFTTLIDGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY  LI G C   D  +A  L  EM  +G++P+ +T+  +++  CK 
Sbjct: 271 KQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +B A      MI+  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 331 GNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYN 426



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 166/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC E ++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+ +  GLCK+G + +A +L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   + B A      M+++ ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PDA  Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 373 KMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +    CK+G +  A  +F  +    + P VV+Y +L+ G+    D +E   L   M 
Sbjct: 145 FNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMX 204

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 205 ASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVD 264

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTT 322



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 112/237 (47%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +
Sbjct: 16  RHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASXVFAAILETKGTQRSDIYVF 75

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++        T   ++        +      + E+++
Sbjct: 76  SGLIXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKVLEHLMKLKYFKLVWGFYKEILE 135

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++ 
Sbjct: 136 CGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 196 GFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTT 252


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 184/389 (47%), Gaps = 55/389 (14%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M      P  +    +L G     K +D    LF ++ + G   DL TYN+L+N F
Sbjct: 220 LFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQ-RLFSKMRASGCNRDLITYNVLLNGF 278

Query: 63  CKMGRVSPGFVVLG-----------------------------------RILRSCFTPDA 87
           CK G +   F +L                                    ++LR    PD 
Sbjct: 279 CKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDV 338

Query: 88  VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           + +T +I+GL  E R+ EA  L  ++   G +PD   Y  LI G C  G+   A +L  E
Sbjct: 339 MLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLE 398

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           ++  +      C P+  TYS +  G+CK G ++KA+ +F +M+     P VVT+ SLI G
Sbjct: 399 ISKHD------CFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLING 452

Query: 208 FCYANDWNEAKCLFIEM-----------MDQGVQP--NVVTFNVIMNELCKNGKMDEASR 254
            C AN   EA+ LF +M           + QG     ++ +  V+M  LC++G + +A +
Sbjct: 453 LCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYK 512

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  ++  GV PD   YN L++GFC  G +N A +LF  M+  G M D  +YG LI+G  
Sbjct: 513 LLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLY 572

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +    E AL ++ +M+ KG  P   TY T
Sbjct: 573 RAGRNEDALEIFEQMVKKGCVPESSTYKT 601



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 187/414 (45%), Gaps = 77/414 (18%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++R     P + +FN++   L + + +   L+++ ++    L PD+ TY ILI+  CK  
Sbjct: 153 LMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTC 212

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +     V+   +      P+ + ++ ++ GLC   +I +A  LF+K+RA GC  D+ TY 
Sbjct: 213 KTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYN 272

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVV---------------------------- 158
            L+NG C++G+   A  L + +       GV+                            
Sbjct: 273 VLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRE 332

Query: 159 -CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
             KPD + Y+ +  GL +EG V +A  L  +M +  + PD + Y +LI+GFC     +EA
Sbjct: 333 NIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA 392

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           + L +E+      PN  T+++++  +CKNG +++A  + + M ++G  P    +N+L++G
Sbjct: 393 ESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLING 452

Query: 278 FCLTGRVNRAKELFVSME------------------------------------------ 295
            C   R+  A+ LF  ME                                          
Sbjct: 453 LCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYK 512

Query: 296 ------SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                  +G + D+ +Y ILING+CK   I GA  L+ EM  KG  P  VTY T
Sbjct: 513 LLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGT 566



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 166/326 (50%), Gaps = 8/326 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +F++L    ++    +  +  F  +      PDL+ +N++++   +         V  ++
Sbjct: 130 AFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQM 189

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L+    PD VT+  LI GLC   +  +A  LF ++   G  P+   Y+ +++GLC+    
Sbjct: 190 LKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKI 249

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A  LF +M A+G       C  D ITY+ + +G CK G++D A  L   +  +     
Sbjct: 250 FDAQRLFSKMRASG-------CNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILG 302

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V+ Y  LI G   A  + EA   + +M+ + ++P+V+ + +++  L + G++ EA  LL 
Sbjct: 303 VIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLG 362

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M + G+RPD   YN L+ GFC  G ++ A+ L + +  + C  +  +Y ILI G CKN 
Sbjct: 363 EMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNG 422

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            I  A  ++ EM   G  P+VVT+N+
Sbjct: 423 LINKAQHIFKEMEKLGCLPSVVTFNS 448



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 141/292 (48%), Gaps = 21/292 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  + I+   L++       L+L   +   GL PD   YN LI  FC MG +     +
Sbjct: 336 PDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESL 395

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I +    P+  T++ LI G+C    I +A  +F ++   GC P V T+ +LINGLC+
Sbjct: 396 RLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCK 455

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKP--------------DAITYSTITDGLCKEGFVD 180
                 A  LF +M        +V KP              D  +   + + LC+ G + 
Sbjct: 456 ANRLEEARLLFYQME-------IVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMIL 508

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA +L +++ D  + PD+ TY  LI GFC   + N A  LF EM  +G  P+ VT+  ++
Sbjct: 509 KAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLI 568

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           + L + G+ ++A  + E M++ G  P++S Y T+M   C    ++ A  +++
Sbjct: 569 DGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWM 620



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 4/179 (2%)

Query: 168 TITDGLCKEGFVDKAKELFLK----MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           T+ D +  +   + A EL+ K    +K+  I      ++ LI  +  A    +A   F  
Sbjct: 94  TVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSL 153

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M D   +P++  FN+I++ L +      A  +   M++  + PD   Y  L+ G C T +
Sbjct: 154 MRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCK 213

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              A  LF  M   G + +   Y I+++G C+ K+I  A  L+S+M + G    ++TYN
Sbjct: 214 TQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYN 272



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 9/239 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NIL     K  + +    LFK +   G  PD  TY  LI+   + GR      +
Sbjct: 524 PDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEI 583

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK-LRAFGCKPDVFTYTTLINGLC 133
             ++++    P++ T+ +++   C E+ I  A +++ K LR F    D      ++    
Sbjct: 584 FEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGWED--EKVRVVAESF 641

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                  A+    EM   +  F      D   Y+    GL +     +A  +F  +KD  
Sbjct: 642 DNEELQTAIRRLLEMDIKSKNF------DLAPYTIFLIGLVQAKRDCEAFAIFSVLKDFK 695

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           +N    +   LI   C   + + A  +F+  +++G +      N ++  L    + D+A
Sbjct: 696 MNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPICNQLLCNLLHLDRKDDA 754


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 175/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PD +TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK+G VD A E++
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVK----GLV--PNGVTFTTLIDGHCKKGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  EM+ +G++P+ +T+  +++  CK 
Sbjct: 271 KRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 331 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYN 426



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 165/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ +++ M + +        PD ITY+T+  GLCK+G + +A +L  +M  + 
Sbjct: 259 KKGRVDLAMEIYKRMLSQS------LLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +   L   M+ NG +  V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 100/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+ 
Sbjct: 153 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDX 212

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 213 YTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKR 272

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM+ KG++P  +TY T
Sbjct: 273 MLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTT 322



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 112/237 (47%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +
Sbjct: 16  RHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVF 75

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++  +     T   ++        +      + E+++
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 135

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++ 
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   D ++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 196 GFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 252


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 174/334 (52%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K+++ V + ++ +   G    LY +NIL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 151 DIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LFEEM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 211 VLINGLCKESKMDDANELFEEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEVY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C     N+A  L  EM  +G++P+ +T+  +++  CK 
Sbjct: 265 KQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 325 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK  ++     L  EM   G  P+VVT
Sbjct: 385 TMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 97/171 (56%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CKEG +  A+ +F  +    + P VV+Y +L+ G+    D NE   L   M   GVQP+
Sbjct: 146 FCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPD 205

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V T++V++N LCK  KMD+A+ L E M+  G+ P+   + TL+DG C  GRV+ A E++ 
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYK 265

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M S   + D+ +Y  LI G CK   +  A  L  EM  KG++P  +TY T
Sbjct: 266 QMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTT 316



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +
Sbjct: 10  RHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAIIETKGNQRSDIYVF 69

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++        T   ++        +N     + E+++
Sbjct: 70  SGLITAYLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFYEEILE 129

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK G +  A  + + + + G+RP    YNTLM+G+   G +N 
Sbjct: 130 CGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNE 189

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 190 GFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTT 246


>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 669

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 15/328 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +F++L  CL ++   D  + + +++   G  PD+  YN LIN F + GRV    +
Sbjct: 344 PPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNTLINYFSEQGRVDDALM 403

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +L     PD ++F + +K LC   R  +   L  ++    C     T+  LI+ LC
Sbjct: 404 LLDSML---CNPDTISFNAALKALCRTERWYDVEELIAQMLREDCPLIEMTFNILIDSLC 460

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ +FE+M          C PD +TYS++ +G  ++G V+ A ELF  M    
Sbjct: 461 QHGLVNHAIEVFEQMPKYR------CTPDIVTYSSLINGFSEQGLVESAIELFQSMP--- 511

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD+ +Y ++++G C A  W +A  L   M  +   PN +TFN+++N LC+ G  D A 
Sbjct: 512 CKPDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADRAI 571

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + + M + G  PD   YN L++GF   GR++ A  L  +M    C  D  SY   + G 
Sbjct: 572 EVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTM---SCKPDAISYNSTLKGL 628

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           C+ +  + A  + +EML K   P  VT+
Sbjct: 629 CRAERWKEAEEIVAEMLRKKCPPNEVTF 656



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 143/294 (48%), Gaps = 14/294 (4%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P +   NILI   C   R++    VL   L+   + DAV+  +L+ G C + R+ +A  +
Sbjct: 108 PAVIACNILIKKLCAHRRLADAERVLD-ALKESGSADAVSHNTLVAGYCRDGRLADAERV 166

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
               +  G   +V TYT LING CR+G    ALNL   M            PD  TY+T+
Sbjct: 167 LEAAKVSGAA-NVVTYTALINGYCRSGRLADALNLIASMP---------VAPDTYTYNTV 216

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GLC     +KA+EL  +M   N +P+ VT+ + IR FC     + A  L   M   G 
Sbjct: 217 LKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERMPRYGC 276

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            P+VV ++ ++N   + G++D+A  LL  M+    +P+   YN  + G C+  R     E
Sbjct: 277 TPDVVIYSTLVNGFSEQGRVDDALVLLNTML---CKPNTVCYNAALKGLCMAERWKDVGE 333

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L   M    C  +  ++ +L +  C++  ++ A+ +  +M   G RP VV YNT
Sbjct: 334 LIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNT 387



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 172/376 (45%), Gaps = 51/376 (13%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + M+R +  P  V +F        +N   D  + L +R+   G  PD+  Y+ L+N F
Sbjct: 232 LMEEMIRNNCHPNEV-TFATQIRSFCQNGLLDHAVQLLERMPRYGCTPDVVIYSTLVNGF 290

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + GRV    V+L  +L     P+ V + + +KGLC   R  +   L  ++    C P+ 
Sbjct: 291 SEQGRVDDALVLLNTML---CKPNTVCYNAALKGLCMAERWKDVGELIAEMVRKDCPPNE 347

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T++ L + LC+ G    A+ + E+M     ++G  C+PD + Y+T+ +   ++G VD A
Sbjct: 348 ATFSMLTSCLCQHGLVDCAMEVVEQMQ----KYG--CRPDVVIYNTLINYFSEQGRVDDA 401

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M     NPD +++ + ++  C    W + + L  +M+ +      +TFN++++ 
Sbjct: 402 LMLLDSML---CNPDTISFNAALKALCRTERWYDVEELIAQMLREDCPLIEMTFNILIDS 458

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC++G ++ A  + E M +    PD   Y++L++GF   G V  A ELF SM    C  D
Sbjct: 459 LCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSMP---CKPD 515

Query: 303 VFSYG-----------------------------------ILINGYCKNKEIEGALSLYS 327
           +FSY                                    ILIN  C+    + A+ ++ 
Sbjct: 516 IFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADRAIEVFK 575

Query: 328 EMLSKGIRPTVVTYNT 343
           +M   G  P + TYN 
Sbjct: 576 QMPEYGSTPDIFTYNA 591



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 156/363 (42%), Gaps = 44/363 (12%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P  P   ++N +   L   K ++    L + +      P+  T+   I  FC+ G +   
Sbjct: 205 PVAPDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHA 264

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +L R+ R   TPD V +++L+ G   + R+ +A  L   L    CKP+   Y   + G
Sbjct: 265 VQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVL---LNTMLCKPNTVCYNAALKG 321

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LC          L  EM   +      C P+  T+S +T  LC+ G VD A E+  +M+ 
Sbjct: 322 LCMAERWKDVGELIAEMVRKD------CPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQK 375

Query: 192 ENINPDVVTYTSLI--------------------------------RGFCYANDWNEAKC 219
               PDVV Y +LI                                +  C    W + + 
Sbjct: 376 YGCRPDVVIYNTLINYFSEQGRVDDALMLLDSMLCNPDTISFNAALKALCRTERWYDVEE 435

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  +M+ +      +TFN++++ LC++G ++ A  + E M +    PD   Y++L++GF 
Sbjct: 436 LIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFS 495

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G V  A ELF SM    C  D+FSY  ++ G C+    E A  L + M  K   P  +
Sbjct: 496 EQGLVESAIELFQSMP---CKPDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEI 552

Query: 340 TYN 342
           T+N
Sbjct: 553 TFN 555



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 159/362 (43%), Gaps = 46/362 (12%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
            PP V + NIL   L  ++       +   L   G   D  ++N L+  +C+ GR++   
Sbjct: 106 EPPAVIACNILIKKLCAHRRLADAERVLDALKESG-SADAVSHNTLVAGYCRDGRLADAE 164

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            VL    +     + VT+T+LI G C   R+ +A  L   +      PD +TY T++ GL
Sbjct: 165 RVL-EAAKVSGAANVVTYTALINGYCRSGRLADALNLIASMPV---APDTYTYNTVLKGL 220

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C       A  L EEM   N      C P+ +T++T     C+ G +D A +L  +M   
Sbjct: 221 CGAKQWEKAEELMEEMIRNN------CHPNEVTFATQIRSFCQNGLLDHAVQLLERMPRY 274

Query: 193 NINPDVVTYTSLIRGF--------------------------------CYANDWNEAKCL 220
              PDVV Y++L+ GF                                C A  W +   L
Sbjct: 275 GCTPDVVIYSTLVNGFSEQGRVDDALVLLNTMLCKPNTVCYNAALKGLCMAERWKDVGEL 334

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
             EM+ +   PN  TF+++ + LC++G +D A  ++E M + G RPD  +YNTL++ F  
Sbjct: 335 IAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNTLINYFSE 394

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            GRV+ A  L  SM    C  D  S+   +   C+ +       L ++ML +      +T
Sbjct: 395 QGRVDDALMLLDSML---CNPDTISFNAALKALCRTERWYDVEELIAQMLREDCPLIEMT 451

Query: 341 YN 342
           +N
Sbjct: 452 FN 453



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 71/128 (55%), Gaps = 5/128 (3%)

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           +A    +  M     P V+  N+++ +LC + ++ +A R+L+ + + G   DA  +NTL+
Sbjct: 93  DAALRLVGSMPSSEPPAVIACNILIKKLCAHRRLADAERVLDALKESG-SADAVSHNTLV 151

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            G+C  GR+  A+ +  + + +G   +V +Y  LINGYC++  +  AL+L + M    + 
Sbjct: 152 AGYCRDGRLADAERVLEAAKVSGAA-NVVTYTALINGYCRSGRLADALNLIASM---PVA 207

Query: 336 PTVVTYNT 343
           P   TYNT
Sbjct: 208 PDTYTYNT 215



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 9/155 (5%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P  P + S+N +   L +   ++    L   +      P+  T+NILIN  C+ G     
Sbjct: 511 PCKPDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADRA 570

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             V  ++     TPD  T+ +LI G   + R+ +A  L + +    CKPD  +Y + + G
Sbjct: 571 IEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTM---SCKPDAISYNSTLKG 627

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
           LCR      A  +  EM          C P+ +T+
Sbjct: 628 LCRAERWKEAEEIVAEMLRKK------CPPNEVTF 656


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/394 (31%), Positives = 185/394 (46%), Gaps = 69/394 (17%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P PP  C  N L   LA+++ +  + SL  R+ +     +L TY  LIN +C  G +   
Sbjct: 37  PLPPLRC-LNTLLMALARHRMFPDMESLASRMPA----RNLRTYTTLINAYCLAGDIPAA 91

Query: 72  FVVLGRILRSCFTPD-----------------------------------AVTFTSLIKG 96
              L  +L +   PD                                   A T+T+L+ G
Sbjct: 92  KQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHG 151

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL--------NLFE-- 146
           L     + EA A+F  +RA  C PD   Y T+++GLC  G T  A         N FE  
Sbjct: 152 LLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPN 211

Query: 147 ---------------EMANG----NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
                          EM +      G  G  C P+  TY+ +  GLCK G V++A  LF 
Sbjct: 212 IVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFS 271

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M +  + P+VVTYT+LI+G C       A  L   M   G+ PN  TF+V+++ LCK  
Sbjct: 272 RMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKRE 331

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K++EA   L  +++ GV+ +  VY +L+DG C TG+++ A EL   M S G + D  SY 
Sbjct: 332 KVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYS 391

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            LI+G C+ K++  A  +  +M+ KGI+ + VTY
Sbjct: 392 SLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTY 425



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 162/327 (49%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L          +  L +F+ ++     P++ TY  LI+  CK G+V    V+
Sbjct: 210 PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVL 269

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++ +   P+ VT+T+LI+G C E  +  A  L   +   G  P+ +T++ LI+ LC+
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               +    LF       G      K + + Y+++ DGLCK G +D A EL  KM  E  
Sbjct: 330 R-EKVEEAQLFLGSLVKKG-----VKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  +Y+SLI G C     ++A  +  +MM++G+Q + VT+ +I++EL +    +   +
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + MI  G+ PD   Y   +  +C  GR+  A+ + V M   G   ++ +Y  LI GY 
Sbjct: 444 IFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYA 503

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
               +  A S +  M+ KG +P   +Y
Sbjct: 504 NLGLVSQAFSTFEVMVGKGWKPNEDSY 530



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 161/332 (48%), Gaps = 21/332 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L        H      L   + + GL P+ +T+++LI+  CK  +V    + 
Sbjct: 280 PNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLF 339

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG +++     + V +TSLI GLC   +I  A  L  K+ + G  PD  +Y++LI+GLCR
Sbjct: 340 LGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCR 399

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  + E+M     E G+   P  +TY+ I D L +E   +  K++F KM    I
Sbjct: 400 QKKLSQATLMLEDMM----EKGIQASP--VTYTIIIDELVREVGSEGPKKIFDKMIATGI 453

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPD+VTYT  +R +C      +A+ + ++M+D+GV PN+VT+N ++      G + +A  
Sbjct: 454 NPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFS 513

Query: 255 LLELMIQIGVRPDASVYNTLM---------DGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
             E+M+  G +P+   Y  L+         D      ++   K+L    ESN    D   
Sbjct: 514 TFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDL---QESN---YDEIV 567

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           + ILI G  +   +    SL S M   G +P+
Sbjct: 568 WKILIYGLLQKGSVAEFSSLLSVMKEHGYQPS 599


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 172/364 (47%), Gaps = 41/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     K       +S+F+ +   G  PD+ TYN LINCFCK  R+   F  
Sbjct: 284 PDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEY 343

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    P+ VT+++LI   C    ++EA   F  +   G +P+ FTYT+LI+  C+
Sbjct: 344 LHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCK 403

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF-------- 186
            G    A  L  EM        +V      TY+ + DGLC++G + +A+ELF        
Sbjct: 404 IGDLNEAFKLESEMQQAGVNLNIV------TYTALLDGLCEDGRMREAEELFGALLKAGW 457

Query: 187 ---------------------------LKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                                       +M  +N+ PD++ Y + I G C  N+  ++  
Sbjct: 458 TLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMA 517

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +  EMMD G+  N   +  +++   K GK  EA  LL+ M  +G++     Y  L+DG C
Sbjct: 518 VIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLC 577

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G V +A   F  M  NG   ++  Y  LI+G CKN  +E A +L++EML KGI P  +
Sbjct: 578 KIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKL 637

Query: 340 TYNT 343
            Y +
Sbjct: 638 VYTS 641



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 165/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S N L   L+K+      LS FK +   GL P ++TYN++I C  + G +     +
Sbjct: 214 PKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSL 273

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD VT+ SLI G      +  A ++F +++  GC+PDV TY +LIN  C+
Sbjct: 274 FEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCK 333

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A     E  +G  + G+  +P+ +TYST+ D  CK G + +A + F+ M    +
Sbjct: 334 FERIPQAF----EYLHGMKQRGL--QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGL 387

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TYTSLI   C   D NEA  L  EM   GV  N+VT+  +++ LC++G+M EA  
Sbjct: 388 QPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEE 447

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +++ G   +  +Y +L  G+     + +A ++   M       D+  YG  I G C
Sbjct: 448 LFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLC 507

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  EIE ++++  EM+  G+      Y T
Sbjct: 508 RQNEIEDSMAVIREMMDCGLTANSYIYTT 536



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    F+ LF  L      +     F ++N   + P + + N L++   K  +       
Sbjct: 179 PGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSF 238

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++ +  +P   T+  +I  L  E  +  A +LF +++A G +PD+ TY +LI+G  +
Sbjct: 239 FKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGK 298

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+++FEEM +        C+PD ITY+++ +  CK   + +A E    MK   +
Sbjct: 299 VGMLTGAVSVFEEMKDAG------CEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGL 352

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTY++LI  FC A    EA   F++M+  G+QPN  T+  +++  CK G ++EA +
Sbjct: 353 QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFK 412

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M Q GV  +   Y  L+DG C  GR+  A+ELF ++   G   +   Y  L +GY 
Sbjct: 413 LESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYI 472

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K K +E A+ +  EM  K ++P ++ Y T
Sbjct: 473 KAKMMEKAMDILEEMNKKNLKPDLLLYGT 501



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 166/373 (44%), Gaps = 43/373 (11%)

Query: 4   FDYM--LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           F+Y+  ++     P V +++ L     K          F  +  +GL P+ +TY  LI+ 
Sbjct: 341 FEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDA 400

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK+G ++  F +   + ++    + VT+T+L+ GLC + R+ EA  LF  L   G   +
Sbjct: 401 NCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLN 460

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE----- 176
              YT+L +G  +      A+++ EEM   N       KPD + Y T   GLC++     
Sbjct: 461 QQIYTSLFHGYIKAKMMEKAMDILEEMNKKN------LKPDLLLYGTKIWGLCRQNEIED 514

Query: 177 ------------------------------GFVDKAKELFLKMKDENINPDVVTYTSLIR 206
                                         G   +A  L  +M+D  I   VVTY  LI 
Sbjct: 515 SMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLID 574

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C      +A   F  M   G+QPN++ +  +++ LCKN  ++EA  L   M+  G+ P
Sbjct: 575 GLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISP 634

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D  VY +L+DG    G    A  L   M   G   D+ +Y  LI G+ +  +++ A SL 
Sbjct: 635 DKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLL 694

Query: 327 SEMLSKGIRPTVV 339
            EML KGI P  V
Sbjct: 695 DEMLRKGIIPDQV 707



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 155/318 (48%), Gaps = 6/318 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++  L   L ++        LF  L   G   +   Y  L + + K   +     +L 
Sbjct: 426 IVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILE 485

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + +    PD + + + I GLC ++ I ++ A+  ++   G   + + YTTLI+   + G
Sbjct: 486 EMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVG 545

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            T  A+NL +EM +     G+  K   +TY  + DGLCK G V +A   F  M    + P
Sbjct: 546 KTTEAVNLLQEMQD----LGI--KITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQP 599

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +++ YT+LI G C  +   EAK LF EM+D+G+ P+ + +  +++   K+G   EA  L 
Sbjct: 600 NIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLR 659

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M++IG+  D   Y +L+ GF   G+V  AK L   M   G + D      L+  Y + 
Sbjct: 660 NRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYEL 719

Query: 317 KEIEGALSLYSEMLSKGI 334
            +I  AL+L+ +M  +G+
Sbjct: 720 GDINEALALHDDMARRGL 737



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 99/186 (53%)

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           VC+P    + T+ + L   G +++A++ F KM    + P V +   L+     ++    A
Sbjct: 176 VCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLA 235

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
              F +M+  G+ P+V T+N+++  L + G ++ A  L E M   G+RPD   YN+L+DG
Sbjct: 236 LSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDG 295

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           +   G +  A  +F  M+  GC  DV +Y  LIN +CK + I  A      M  +G++P 
Sbjct: 296 YGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPN 355

Query: 338 VVTYNT 343
           VVTY+T
Sbjct: 356 VVTYST 361



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 6/203 (2%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            ++L + +  +G+   + TY +LI+  CK+G V         + R+   P+ + +T+LI 
Sbjct: 550 AVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALID 609

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
           GLC    + EA  LF ++   G  PD   YT+LI+G  + G+   AL+L   M     E 
Sbjct: 610 GLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMV----EI 665

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
           G+  + D   Y+++  G  + G V  AK L  +M  + I PD V    L+R +    D N
Sbjct: 666 GM--ELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDIN 723

Query: 216 EAKCLFIEMMDQGVQPNVVTFNV 238
           EA  L  +M  +G+    +   V
Sbjct: 724 EALALHDDMARRGLISGTIDITV 746



 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 3/173 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD+M R +   P +  +  L   L KN   +   +LF  +   G+ PD   Y  LI+   
Sbjct: 589 FDHMTR-NGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNM 647

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G       +  R++      D   +TSLI G     ++  A +L  ++   G  PD  
Sbjct: 648 KHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQV 707

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV--VCKPDAITYSTITDGLC 174
               L+      G    AL L ++MA      G   +  P  +T  T    LC
Sbjct: 708 LCICLLRKYYELGDINEALALHDDMARRGLISGTIDITVPSCLTAVTKLHKLC 760


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 165/336 (49%), Gaps = 11/336 (3%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R+ P P    S N L   L+K    D     FK + + G+   ++TYNI+I+  CK G +
Sbjct: 16  RVFPKPR---SCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDL 72

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +  ++  + FTPD VT+ SLI G      + E   +F +++   C PDV TY  L
Sbjct: 73  EMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNAL 132

Query: 129 INGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           IN  C+      A     EM ANG        KP+ +TYST  D  CKEG + +A + F+
Sbjct: 133 INCFCKFERMPKAFEFLHEMKANG-------LKPNVVTYSTFIDAFCKEGMLQEAIKFFV 185

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M+   + P+  TYTSLI   C A +  EA  L  E++  G++ NVVT+  +++ LC+ G
Sbjct: 186 DMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEG 245

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           +M EA  +   M+  GV P+   Y  L+ GF     +  AK++   M+      D+  YG
Sbjct: 246 RMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYG 305

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++ G C    +E A  L  E+   GI    V Y T
Sbjct: 306 TILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTT 341



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 178/385 (46%), Gaps = 64/385 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     K    D  + +F+++      PD+ TYN LINCFCK  R+   F  
Sbjct: 89  PDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF 148

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P+ VT+++ I   C E  + EA   F  +R     P+ FTYT+LI+  C+
Sbjct: 149 LHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 208

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL L EE+     +  VV      TY+ + DGLC+EG + +A+E+F  M +  +
Sbjct: 209 AGNLAEALKLVEEILQAGIKLNVV------TYTALLDGLCEEGRMKEAEEVFRAMLNAGV 262

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TYT+L+ GF  A +   AK +  EM ++ ++P+++ +  I+  LC   +++EA  
Sbjct: 263 APNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKL 322

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA-----------------------KELF 291
           L+  + + G+  +A +Y TLMD +  +G+   A                       K+LF
Sbjct: 323 LIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLF 382

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSL-------------------------- 325
             M   G M D  +Y  LI+G  K+  ++ AL+L                          
Sbjct: 383 DEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHS 442

Query: 326 ---------YSEMLSKGIRPTVVTY 341
                      EM+ KG+ P  V Y
Sbjct: 443 GQVQKARNLLDEMIGKGVLPDEVVY 467



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 173/366 (47%), Gaps = 38/366 (10%)

Query: 1   FCIFDYM---------LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD 51
           FC F+ M         ++ +   P V +++       K       +  F  +  + L P+
Sbjct: 136 FCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPN 195

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
            +TY  LI+  CK G ++    ++  IL++    + VT+T+L+ GLC E R+ EA  +F 
Sbjct: 196 EFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFR 255

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
            +   G  P+  TYT L++G  +      A ++ +EM           KPD + Y TI  
Sbjct: 256 AMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK------CIKPDLLLYGTILW 309

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSL-----------------------IRGF 208
           GLC E  +++AK L  ++K+  IN + V YT+L                       + G 
Sbjct: 310 GLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGL 369

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C  N +  AK LF EM+D+G+ P+ + +  +++   K+G + EA  L + MI+IG+  D 
Sbjct: 370 CKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDL 429

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y  L+ G   +G+V +A+ L   M   G + D   Y  LI  Y    +++ AL L +E
Sbjct: 430 HAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNE 489

Query: 329 MLSKGI 334
           M  +G+
Sbjct: 490 MAKRGM 495



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 168/350 (48%), Gaps = 29/350 (8%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++NI+   L K    +   SLF ++   G  PD+ TYN LI+   K+G +     +  
Sbjct: 56  VFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFE 115

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++  +   PD +T+ +LI   C   R+ +A     +++A G KP+V TY+T I+  C+ G
Sbjct: 116 QMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEG 175

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+  F +M        V   P+  TY+++ D  CK G + +A +L  ++    I  
Sbjct: 176 MLQEAIKFFVDMRR------VALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKL 229

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +VVTYT+L+ G C      EA+ +F  M++ GV PN  T+  +++   K  +M+ A  +L
Sbjct: 230 NVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDIL 289

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY--- 313
           + M +  ++PD  +Y T++ G C   R+  AK L   ++ +G   +   Y  L++ Y   
Sbjct: 290 KEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKS 349

Query: 314 --------------------CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                               CKN   E A  L+ EML KG+ P  + Y  
Sbjct: 350 GQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTA 399



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 6/239 (2%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           EA+  F K+R F   P   +   L++ L + G   ++   F++M    G  G+  K    
Sbjct: 4   EASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDM----GAAGI--KRSVF 57

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY+ + D LCKEG ++ A+ LF +MK+    PD+VTY SLI G       +E  C+F +M
Sbjct: 58  TYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM 117

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
            D    P+V+T+N ++N  CK  +M +A   L  M   G++P+   Y+T +D FC  G +
Sbjct: 118 KDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGML 177

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A + FV M       + F+Y  LI+  CK   +  AL L  E+L  GI+  VVTY  
Sbjct: 178 QEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTA 236



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 140/292 (47%), Gaps = 18/292 (6%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++  L   L +         +F+ + + G+ P+  TY  L++ F K   +     +L 
Sbjct: 231 VVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILK 290

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +   C  PD + + +++ GLC ESR+ EA  L  +++  G   +   YTTL++   ++G
Sbjct: 291 EMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSG 350

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL L EEM +                  + DGLCK    + AK+LF +M D+ + P
Sbjct: 351 QATEALTLLEEMLD------------------LVDGLCKNNCFEVAKKLFDEMLDKGMMP 392

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D + YT+LI G     +  EA  L   M++ G++ ++  +  ++  L  +G++ +A  LL
Sbjct: 393 DKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLL 452

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + MI  GV PD  VY  L+  +   G+V+ A EL   M   G +  +  + +
Sbjct: 453 DEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLSDHAV 504



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 88/166 (53%)

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            +++A E FLKM+   + P   +  +L+         + ++  F +M   G++ +V T+N
Sbjct: 1   MLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYN 60

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           ++++ LCK G ++ A  L   M + G  PD   YN+L+DG    G ++    +F  M+  
Sbjct: 61  IMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA 120

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            C  DV +Y  LIN +CK + +  A     EM + G++P VVTY+T
Sbjct: 121 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYST 166


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 185/395 (46%), Gaps = 69/395 (17%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P PP  C  N L   LA+++ +  + SL  R+ +     +L TY  LIN +C  G +   
Sbjct: 37  PLPPLRC-LNTLLMALARHRMFPDMESLASRMPA----RNLRTYTTLINAYCLAGDIPAA 91

Query: 72  FVVLGRILRSCFTPD-----------------------------------AVTFTSLIKG 96
              L  +L +   PD                                   A T+T+L+ G
Sbjct: 92  KQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHG 151

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL--------NLFE-- 146
           L     + EA A+F  +RA  C PD   Y T+++GLC  G T  A         N FE  
Sbjct: 152 LLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPN 211

Query: 147 ---------------EMANG----NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
                          EM +      G  G  C P+  TY+ +  GLCK G V++A  LF 
Sbjct: 212 IVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFS 271

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M +  + P+VVTYT+LI+G C       A  L   M   G+ PN  TF+V+++ LCK  
Sbjct: 272 RMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKRE 331

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K++EA   L  +++ GV+ +  VY +L+DG C TG+++ A EL   M S G + D  SY 
Sbjct: 332 KVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYS 391

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            LI+G C+ K++  A  +  +M+ KGI+ + VTY 
Sbjct: 392 SLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYT 426



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 162/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L          +  L +F+ ++     P++ TY  LI+  CK G+V    V+
Sbjct: 210 PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVL 269

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++ +   P+ VT+T+LI+G C E  +  A  L   +   G  P+ +T++ LI+ LC+
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               +    LF       G      K + + Y+++ DGLCK G +D A EL  KM  E  
Sbjct: 330 R-EKVEEAQLFLGSLVKKG-----VKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  +Y+SLI G C     ++A  +  +MM++G+Q + VT+ +I++EL +    +   +
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + MI  G+ PD   Y   +  +C  GR+  A+ + V M   G   ++ +Y  LI GY 
Sbjct: 444 IFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYA 503

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               +  A S +  M+ KG +P   +Y 
Sbjct: 504 NLGLVSQAFSTFEVMVGKGWKPNEDSYT 531



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 166/374 (44%), Gaps = 53/374 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L        H      L   + + GL P+ +T+++LI+  CK  +V    + 
Sbjct: 280 PNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLF 339

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG +++     + V +TSLI GLC   +I  A  L  K+ + G  PD  +Y++LI+GLCR
Sbjct: 340 LGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCR 399

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  + E+M     E G+   P  +TY+ I D L +E   +  K++F KM    I
Sbjct: 400 QKKLSQATLMLEDMM----EKGIQASP--VTYTIIIDELVREVGSEGPKKIFDKMIATGI 453

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPD+VTYT  +R +C      +A+ + ++M+D+GV PN+VT+N ++      G + +A  
Sbjct: 454 NPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFS 513

Query: 255 LLELMIQIGVRPD----------------------------------------------- 267
             E+M+  G +P+                                               
Sbjct: 514 TFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLA 573

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
           A +Y+  +   C   R+  AK  F+ M++         Y  +I+  C+ K +  AL+L  
Sbjct: 574 ADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLD 633

Query: 328 EMLSKGIRPTVVTY 341
            M   G  P + +Y
Sbjct: 634 SMTKSGYLPHLESY 647



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 6/312 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K+   +  + LF R+   GL P++ TY  LI   C  G +   F +
Sbjct: 245 PNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRL 304

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P+  TF+ LI  LC   ++ EA      L   G K +   YT+LI+GLC+
Sbjct: 305 LHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCK 364

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    A  L ++M +     G V  PDA +YS++ DGLC++  + +A  +   M ++ I
Sbjct: 365 TGKIDAADELMQKMISE----GFV--PDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               VTYT +I            K +F +M+  G+ P++VT+ V +   C+ G+M++A  
Sbjct: 419 QASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAES 478

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           ++  M+  GV P+   YNTL+ G+   G V++A   F  M   G   +  SY +L+    
Sbjct: 479 MIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVV 538

Query: 315 KNKEIEGALSLY 326
           K    + ++ ++
Sbjct: 539 KKSSSDNSVDIW 550



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 149/365 (40%), Gaps = 53/365 (14%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL---- 75
           +  L   L K    D    L +++ S G  PD ++Y+ LI+  C+  ++S   ++L    
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 76  -------------------------------GRILRSCFTPDAVTFTSLIKGLCAESRIM 104
                                           +++ +   PD VT+T  ++  C E R+ 
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           +A ++  ++   G  P++ TY TLI G    G    A + FE M  G G      KP+  
Sbjct: 475 DAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMV-GKG-----WKPNED 528

Query: 165 TYSTITDGLCKEGFVDKAKELF--LKMKDENINPDVVT----------YTSLIRGFCYAN 212
           +Y+ +   + K+   D + +++    MKD  +  + +T          Y+  IR  C  +
Sbjct: 529 SYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVD 588

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
              EAK  F+ M +  + P+   +  I++  C+   + +A  LL+ M + G  P    Y 
Sbjct: 589 RLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYR 648

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            ++   C  G    AKE+F  +       D   + ILI G  +   +    SL S M   
Sbjct: 649 IIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEH 708

Query: 333 GIRPT 337
           G +P+
Sbjct: 709 GYQPS 713



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 131/286 (45%), Gaps = 6/286 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++ I+   L +    +    +F ++ + G+ PD+ TY + +  +C+ GR+     ++ ++
Sbjct: 424 TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQM 483

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P+ VT+ +LI+G      + +A + F  +   G KP+  +YT L+  + +   +
Sbjct: 484 VDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSS 543

Query: 139 IVALNLFE--EMANGNGEFGVVCKPD----AITYSTITDGLCKEGFVDKAKELFLKMKDE 192
             ++++++  +M +       + +      A  YS     LC+   +++AK  F+ M++ 
Sbjct: 544 DNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNA 603

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           N+ P    YTS+I   C      +A  L   M   G  P++ ++ +I++ LC+ G    A
Sbjct: 604 NLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTA 663

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
             +   ++      D  V+  L+ G    G V     L   M+ +G
Sbjct: 664 KEVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHG 709



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 107/299 (35%), Gaps = 54/299 (18%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M+    +P  + ++ +      +    +   S+  ++   G+FP+L TYN LI  +
Sbjct: 444 IFDKMIATGINPD-IVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSL----------------------------- 93
             +G VS  F     ++   + P+  ++T L                             
Sbjct: 503 ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLL 562

Query: 94  ------------------IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
                             I+ LC   R+ EA   F  ++     P    YT++I+  CR 
Sbjct: 563 EDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRL 622

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                AL L + M            P   +Y  I   LC+ G    AKE+F  +  +  N
Sbjct: 623 KILTDALTLLDSMTKSG------YLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESN 676

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            D + +  LI G        E   L   M + G QP+     +I  E+    ++ E +R
Sbjct: 677 YDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMITGEITVTNEVQEIAR 735


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 176/352 (50%), Gaps = 29/352 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S N L   LAK +  +   +L+K++ + G+ P L T+N LIN   K G+V    ++L +I
Sbjct: 165 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 224

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +   +PD  T+TSLI G C    +  A  +F ++   GC P+  TY+TLINGLC  G  
Sbjct: 225 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 284

Query: 139 IVALNLFEEMANGNGEFGVV-----------------------------CKPDAITYSTI 169
             AL++ EEM     E  V                              C+P+  TY+ +
Sbjct: 285 DEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTAL 344

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GL + G ++ A  L+ KM  E + P+ VTY +LI   C    ++ A  +F  M   G 
Sbjct: 345 ISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGS 404

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             N  T+N I+  LC  G +++A  L E M+++G  P    YNTL++G+   G VN A  
Sbjct: 405 LANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAAR 464

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           L   M+ NGC  D ++Y  L++G+ K  ++E A   + EM+  G+ P  V+Y
Sbjct: 465 LLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSY 516



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 165/308 (53%), Gaps = 6/308 (1%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
           V      ++ +G    LY+ N L+    K   V     +  ++L S   P  +TF +LI 
Sbjct: 147 VADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLIN 206

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
            L  + ++ EA  + +++  +   PDVFTYT+LI G CR  +  +A  +F+ M       
Sbjct: 207 ILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEG--- 263

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
              C P+++TYST+ +GLC EG VD+A ++  +M ++ I P V TYT  I   C      
Sbjct: 264 ---CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEE 320

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA  L   M  +G +PNV T+  +++ L + GK++ A  L   M++ G+ P+   YN L+
Sbjct: 321 EAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALI 380

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +  C+ GR + A ++F  ME +G + +  +Y  +I G C   +IE A+ L+ +ML  G  
Sbjct: 381 NELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 440

Query: 336 PTVVTYNT 343
           PTVVTYNT
Sbjct: 441 PTVVTYNT 448



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 162/329 (49%), Gaps = 10/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L++    +  + L+ ++   GL P+  TYN LIN  C  GR S    +
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       +  T+  +IKGLC    I +A  LF K+   G  P V TY TLING   
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 455

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L + M   NG     C+PD  TY+ +  G  K G ++ A   F +M +  +
Sbjct: 456 KGNVNNAARLLDLMKE-NG-----CEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 509

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NP+ V+YT+LI G       + A  L   M + G  PNV ++N ++N L K  +  EA +
Sbjct: 510 NPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEK 569

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M++ G+ P+   Y TL+DG C  GR   A ++F  ME   C+ ++++Y  LI G C
Sbjct: 570 ICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC 629

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +    EG       M   G  PT+ TY+T
Sbjct: 630 Q----EGKADEAERMSEIGCEPTLDTYST 654



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 171/370 (46%), Gaps = 34/370 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF Y L      P V ++  L     +N++ D    +F R+   G  P+  TY+ LIN  
Sbjct: 224 IFQYDL-----SPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGL 278

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GRV     +L  ++     P   T+T  I  LCA     EA  L  +++  GC+P+V
Sbjct: 279 CNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNV 338

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGN------------------GEFGVVCK---- 160
            TYT LI+GL R G   VA+ L+ +M                      G F    K    
Sbjct: 339 QTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHW 398

Query: 161 -------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                   +  TY+ I  GLC  G ++KA  LF KM      P VVTY +LI G+    +
Sbjct: 399 MEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGN 458

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            N A  L   M + G +P+  T+N +++   K GK++ AS   + M++ G+ P+   Y  
Sbjct: 459 VNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTA 518

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+DG    G+V+ A  L   ME  GC  +V SY  +ING  K      A  +  +M+ +G
Sbjct: 519 LIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQG 578

Query: 334 IRPTVVTYNT 343
           + P V+TY T
Sbjct: 579 LLPNVITYTT 588



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 161/327 (49%), Gaps = 10/327 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L    +K    ++    F+ +   GL P+  +Y  LI+   K G+V     +
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSL 535

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+      P+  ++ ++I GL  E+R  EA  +  K+   G  P+V TYTTLI+GLCR
Sbjct: 536 LKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCR 595

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A  +F +M          C P+  TYS++  GLC+EG  D+A+    +M +   
Sbjct: 596 NGRTQFAFKIFHDMEKRK------CLPNLYTYSSLIYGLCQEGKADEAE----RMSEIGC 645

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P + TY++L+ G C    + EA+ L  +M ++G  P+   +  ++   CKN ++D A +
Sbjct: 646 EPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALK 705

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   +   G +   S+Y  L+   C  G+V  A+ LF +M       D   + +L++G  
Sbjct: 706 IFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLL 765

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K  E++  + L   M SK   P + TY
Sbjct: 766 KEGELDLCMKLLHIMESKNFTPNIQTY 792



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 153/306 (50%), Gaps = 11/306 (3%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M+    +P PV S+  L    +K+   D  LSL KR+  +G  P++ +YN +IN   
Sbjct: 501 FQEMVECGLNPNPV-SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS 559

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K  R S    +  +++     P+ +T+T+LI GLC   R   A  +F  +    C P+++
Sbjct: 560 KENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLY 619

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY++LI GLC+ G    A  + E          + C+P   TYST+  GLC++G   +A+
Sbjct: 620 TYSSLIYGLCQEGKADEAERMSE----------IGCEPTLDTYSTLVSGLCRKGRFYEAE 669

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L   MK+    PD   Y SL+   C   + + A  +F  +  +G Q ++  +  ++  L
Sbjct: 670 QLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICAL 729

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G+++EA  L + M++     D  V+  L+DG    G ++   +L   MES     ++
Sbjct: 730 CKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNI 789

Query: 304 FSYGIL 309
            +Y IL
Sbjct: 790 QTYVIL 795



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 156/322 (48%), Gaps = 24/322 (7%)

Query: 29  KNKHYDTVLSLFKRLNSIGLF------PDLYTYNILINCFCKMGRVSPGFVVLGRILRS- 81
           K  H   ++++ K   S+  F         Y +N+  NCF  M         L R++R  
Sbjct: 74  KAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHNM--NCFISM---------LNRLVRDR 122

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
            F P       +IK    E  I   A    ++   G    +++  TL+  L +      A
Sbjct: 123 VFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGA 182

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
            NL+++M N         +P  +T++T+ + L K+G V +A+ +  ++   +++PDV TY
Sbjct: 183 RNLYKQMLNSG------IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTY 236

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           TSLI G C   + + A  +F  M+ +G  PN VT++ ++N LC  G++DEA  +LE MI+
Sbjct: 237 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 296

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G+ P    Y   +   C       A EL   M+  GC  +V +Y  LI+G  +  ++E 
Sbjct: 297 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 356

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A+ LY +ML +G+ P  VTYN 
Sbjct: 357 AIGLYHKMLKEGLVPNTVTYNA 378



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 119/275 (43%), Gaps = 43/275 (15%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N +   L+K   +     +  ++   GL P++ TY  LI+  C+ GR    F +
Sbjct: 546 PNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 605

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+  T++SLI GLC E +  EA     ++   GC+P + TY+TL++GLCR
Sbjct: 606 FHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAE----RMSEIGCEPTLDTYSTLVSGLCR 661

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD----------------------- 171
            G    A  L ++M     E G  C    I YS +                         
Sbjct: 662 KGRFYEAEQLVKDMK----ERGF-CPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQ 716

Query: 172 -----------GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
                       LCK G V++A+ LF  M ++  N D + +T L+ G     + +    L
Sbjct: 717 LHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKL 776

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
              M  +   PN+ T+ ++  EL + GK  E+  L
Sbjct: 777 LHIMESKNFTPNIQTYVILGRELSRIGKSIESEPL 811



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 51/120 (42%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           KN   D  L +F  + + G    L  Y  LI   CK G+V     +   +L   +  D +
Sbjct: 696 KNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEI 755

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
            +T L+ GL  E  +     L   + +    P++ TY  L   L R G +I +  L +++
Sbjct: 756 VWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKL 815


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 175/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P AV++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGL +      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 217 VLINGLSKESKMDDADELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  +M  +G++P+ +T+  +++  CK 
Sbjct: 271 KQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D  VY  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 331 GDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYN 426



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P   +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GL  ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A +L   M  + 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G+ PD   Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 373 KMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 96/170 (56%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P  V+Y +L+ G+      +E   L   M+  GVQP+V
Sbjct: 153 CKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDV 212

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N L K  KMD+A  L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 213 YTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 272

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  +M  KG++P  +TY T
Sbjct: 273 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTT 322



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +
Sbjct: 19  LHSYCTMIHFLCTHQMFSEAKSLLQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGL 78

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E +   ++  +     T   ++        +      + E+++ G 
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGY 138

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK+G +  A  + + + + G+RP A  YNTLM+G+   G ++    
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFR 198

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING  K  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTT 252


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 180/327 (55%), Gaps = 9/327 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVVLGR 77
           ++N L   L        V++LF+R     ++ PD++++N++I   C++G+V     ++ R
Sbjct: 220 AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVER 279

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTG 136
           +     +PD VT   ++ GLC  + +     +  +L+  G C P+V T+T++I+G C+ G
Sbjct: 280 MNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAG 339

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ ++ +M       G++  P+ +TY+ + +G  K G +  A E++ +M      P
Sbjct: 340 KLEDAMAVYNDMVAS----GIM--PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPP 393

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DVVT++SLI G+C     ++A  ++ +M    +QPNV TF++I++ LCK  + DEA  LL
Sbjct: 394 DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLL 453

Query: 257 -ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            EL ++  + P A +YN ++D  C  G+V+ A  +   ME  GC  D ++Y ILI GYC 
Sbjct: 454 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCM 513

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
              I  A+  + EM+  G  P  +T N
Sbjct: 514 KSRISEAIMFFHEMVEAGCSPDSITVN 540



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 162/311 (52%), Gaps = 8/311 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+  ++     P V SFN++   + +       L L +R+N  G  PD  T+NI+++  
Sbjct: 240 LFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGL 299

Query: 63  CKMGRVSPGFVVLGRILRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           C+   VS G  VL R+ R     P+ VTFTS+I G C   ++ +A A++  + A G  P+
Sbjct: 300 CRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPN 359

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TY  LING  + G    A+ ++++M        + C PD +T+S++ DG C+ G +D 
Sbjct: 360 TVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRCGQLDD 413

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIM 240
           A  ++  M    I P+V T++ +I   C  N  +EA CL  E+ +   + P    +N ++
Sbjct: 414 ALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVI 473

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK GK+DEA+ + + M + G RPD   Y  L+ G+C+  R++ A   F  M   GC 
Sbjct: 474 DVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCS 533

Query: 301 RDVFSYGILIN 311
            D  +    I+
Sbjct: 534 PDSITVNCFIS 544



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 170/343 (49%), Gaps = 18/343 (5%)

Query: 10  MHPSP----PPVCSFNILFGCLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCFCK 64
           +H SP    P   S   +   L ++      L LF ++ +  G  PD    + L++    
Sbjct: 136 LHCSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTC 195

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL---RAFGCKPD 121
              +     +L +        +A  +  L+  L    R+ +  ALF +    R +   PD
Sbjct: 196 ANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYS--PD 253

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V+++  +I G+CR G    AL L E M     EFG  C PD +T++ I DGLC+   V +
Sbjct: 254 VWSFNVVIKGVCRVGQVQKALELVERM----NEFG--CSPDTVTHNIIVDGLCRTNEVSR 307

Query: 182 AKELFLKMKDENI-NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
             E+  +++ + +  P+VVT+TS+I G+C A    +A  ++ +M+  G+ PN VT+NV++
Sbjct: 308 GHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLI 367

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N   K G +  A  + + M ++   PD   +++L+DG+C  G+++ A  ++  M  +   
Sbjct: 368 NGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQ 427

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEM-LSKGIRPTVVTYN 342
            +V+++ I+I+  CK    + A+ L +E+ L   I P    YN
Sbjct: 428 PNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYN 470



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 130/267 (48%), Gaps = 15/267 (5%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA-FGCKPDVFTYTTLINGLCRTGHTIVA 141
            TP A +   +I  LC   R  +A  LF ++   +G  PD    + L++       +   
Sbjct: 143 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVS-------SCTC 195

Query: 142 LNLFEEMA---NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK-MKDENINPD 197
            NL +  A   +   EFG  C+ +A  Y+ +   L   G V     LF + ++D   +PD
Sbjct: 196 ANLLDASATLLSKASEFG--CRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD 253

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V ++  +I+G C      +A  L   M + G  P+ VT N+I++ LC+  ++     +L 
Sbjct: 254 VWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLR 313

Query: 258 LMIQIGV-RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
            + + GV  P+   + +++ G+C  G++  A  ++  M ++G M +  +Y +LINGY K 
Sbjct: 314 RLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKV 373

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++  A+ +Y +M      P VVT+++
Sbjct: 374 GDLGSAVEVYQQMTRLRCPPDVVTFSS 400


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 177/378 (46%), Gaps = 44/378 (11%)

Query: 1   FCIFD--YMLRMHPSPPPVCS--FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYN 56
           F +F   Y LR+     P+C+  FNI+   L         L L +++      P+  TYN
Sbjct: 101 FALFADIYRLRL-----PLCTTTFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYN 151

Query: 57  ILINCFCKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
            +I  FC  GRV     V+  +  R    PD  T+ +LI G C   R+ +A  +F ++  
Sbjct: 152 TVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLT 211

Query: 116 FG-CKPDVFTYTTLINGLCRTGHTIVALNLFEEM----------------------ANGN 152
            G   P    Y  LI G C  G   VAL   E+M                      A  +
Sbjct: 212 KGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARAS 271

Query: 153 GEFGVVCK-------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
             + V+ +       PD  TY+ + +G CKEG   KA E+F +M  + +    VTYTSLI
Sbjct: 272 DAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLI 331

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
             F       E   LF   + +G++P+VV +N ++N  C  G M+ A  ++  M +  + 
Sbjct: 332 YVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIP 391

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD   YNTLM GFCL GR++ A+ L   M   G   D+ SY  LI+GY    +I+ AL +
Sbjct: 392 PDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRV 451

Query: 326 YSEMLSKGIRPTVVTYNT 343
             EM+ KG  PT++TYN 
Sbjct: 452 RDEMMDKGFNPTLMTYNA 469



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 174/371 (46%), Gaps = 42/371 (11%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +LR  P P  V    ++ G  A+ +    +  + +     G+ PD YTY  LI+ +CK+G
Sbjct: 138 LLRQMPRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIG 197

Query: 67  RVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLC--------------------------- 98
           R+     V   +L +    P AV + +LI G C                           
Sbjct: 198 RMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATY 257

Query: 99  --------AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
                    ++R  +A A+  +++  G  PDVFTY  LING C+ G+   AL +FEEM+ 
Sbjct: 258 NLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQ 317

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
                    +  A+TY+++     ++G V +   LF     + I PDVV Y +LI   C 
Sbjct: 318 KG------VRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCT 371

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
             D   A  +  EM  + + P+ +T+N +M   C  G++DEA  L++ M + G++PD   
Sbjct: 372 GGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVS 431

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           YNTL+ G+ + G +  A  +   M   G    + +Y  LI G CK ++ + A +L  EM+
Sbjct: 432 YNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMV 491

Query: 331 SKGIRPTVVTY 341
           +KGI P   TY
Sbjct: 492 AKGITPDDSTY 502



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 156/334 (46%), Gaps = 15/334 (4%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H S  P     +L    A   H  T L L+ +L S+ +   + + + L++        +P
Sbjct: 45  HLSASPSLPHLLLTASAAARPHA-TSLRLYAQLKSLSVPIPVASLHPLLSSLPS----AP 99

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            F +   I R        TF  +++ LCA  + + A  L  ++     +P+  TY T+I 
Sbjct: 100 AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQM----PRPNAVTYNTVIA 155

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G C  G    AL +  EM    G       PD  TY+T+  G CK G ++ A ++F +M 
Sbjct: 156 GFCARGRVQAALEVMREMRERGG-----IAPDKYTYATLISGWCKIGRMEDAVKVFDEML 210

Query: 191 DE-NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            +  + P  V Y +LI G+C     + A     +M+ +G+   V T+N++M+ L  + + 
Sbjct: 211 TKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARA 270

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +A  +LE M + G  PD   YN L++G+C  G   +A E+F  M   G      +Y  L
Sbjct: 271 SDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSL 330

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I  + +  +++    L++  + KGIRP VV YN 
Sbjct: 331 IYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNA 364



 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 39/90 (43%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N L    +        L +   +   G  P L TYN LI   CK+ +      +
Sbjct: 427 PDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENL 486

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIM 104
           +  ++    TPD  T+ SLI+GL  E   M
Sbjct: 487 MKEMVAKGITPDDSTYISLIEGLTTEDERM 516


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 159/334 (47%), Gaps = 22/334 (6%)

Query: 26  CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP 85
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 431 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 490

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D  T+T LI   C    I +A  LF ++R+ GC P V TYT LI+   +      A ++F
Sbjct: 491 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 550

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM---------------- 189
             M +        C+P+ +TY  + DGLCK G + KA E++ K+                
Sbjct: 551 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 604

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               + P+VVTY +L+ G C A+  + A  L   M+  G +PN + ++ +++  CK GK+
Sbjct: 605 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 664

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  +   M + G  P    Y +L+D     GR++ A ++   M  + C  +V +Y  +
Sbjct: 665 DSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAM 724

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+G C+  E E AL L S M  KG  P VVTY  
Sbjct: 725 IDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 758



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 159/308 (51%), Gaps = 10/308 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +   L      +    LF+ +  +G+ PD+YTY ILI+ FCK G +     +
Sbjct: 455 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 514

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P  VT+T+LI       ++ +A  +F ++   GC+P+  TY  L++GLC+
Sbjct: 515 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 574

Query: 135 TGHTIVALNLFEEMA----NGNGEFGVVCK------PDAITYSTITDGLCKEGFVDKAKE 184
            G+   A  ++ ++     + + +F   C+      P+ +TY  + DGLCK   VD A E
Sbjct: 575 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 634

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L   M      P+ + Y +LI GFC A   + A+ +F++M   G  P+V T+  +++ + 
Sbjct: 635 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 694

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K+G++D A ++L  M++    P+   Y  ++DG C  G   +A +L   ME  GC  +V 
Sbjct: 695 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 754

Query: 305 SYGILING 312
           +Y  LI+G
Sbjct: 755 TYTALIDG 762



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 166/363 (45%), Gaps = 29/363 (7%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I + M+    +P P   FN L       K Y     L  R+ + G  P    YNI I   
Sbjct: 333 IINMMMTEGCNPNPSL-FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 391

Query: 63  CKMGRV-SPGFV-----VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           C   ++ SP  +     + G +L +    + V   +  + LC   +  +A  L  ++   
Sbjct: 392 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 451

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G  PD  TY+ +I  LC       A  LF+EM        V   PD  TY+ + D  CK 
Sbjct: 452 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM------VGVTPDVYTYTILIDSFCKA 505

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +++A+ LF +M+    +P VVTYT+LI  +  A    +A  +F  M+D G +PN VT+
Sbjct: 506 GLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 565

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIG----------------VRPDASVYNTLMDGFCL 280
             +++ LCK G + +A  +   +I                   + P+   Y  L+DG C 
Sbjct: 566 GALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK 625

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             +V+ A EL  +M S+GC  +   Y  LI+G+CK  +I+ A  ++ +M   G  P+V T
Sbjct: 626 AHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHT 685

Query: 341 YNT 343
           Y +
Sbjct: 686 YTS 688



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 155/364 (42%), Gaps = 38/364 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L+     D    + K ++  G   D +T     +  CK GR +     
Sbjct: 207 PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA--- 263

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  I R  F  D V  T +I GL   S   EA +   ++R   C P+V TY TL++G  +
Sbjct: 264 LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 323

Query: 135 TGH-----TIVAL----------NLFEEMANG--------------NGEFGVVCKPDAIT 165
                    I+ +          +LF  + +               N      C P  + 
Sbjct: 324 KKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVV 383

Query: 166 YSTITDGLCKE------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           Y+     +C +        +D A++++ +M   N   + V   +  R  C    +++A  
Sbjct: 384 YNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQ 443

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  EMM +G  P+  T++ ++  LC   K+++A  L + M  +GV PD   Y  L+D FC
Sbjct: 444 LIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFC 503

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G + +A+ LF  M S GC   V +Y  LI+ Y K K++  A  ++  M+  G RP  V
Sbjct: 504 KAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 563

Query: 340 TYNT 343
           TY  
Sbjct: 564 TYGA 567



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 2/305 (0%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L +  ++D  +S   R+      P++ TY  L++ F K  ++     ++  ++     P+
Sbjct: 286 LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 345

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
              F SL+   C E     A  L  ++   GC P    Y   I  +C     + + +L +
Sbjct: 346 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQ-EKLPSPDLLD 404

Query: 147 EMANGNGE-FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
                 GE     C  + +  +     LC  G  DKA +L  +M  +   PD  TY+ +I
Sbjct: 405 LAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVI 464

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
              C+A    +A  LF EM   GV P+V T+ ++++  CK G +++A  L E M  +G  
Sbjct: 465 TFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS 524

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           P    Y  L+  +    +V +A ++F  M   GC  +  +YG L++G CK   I  A  +
Sbjct: 525 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 584

Query: 326 YSEML 330
           Y++++
Sbjct: 585 YAKLI 589



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 146/365 (40%), Gaps = 50/365 (13%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
            N+L     +   ++  L    RL   G  P   TYN L+      G+V  GF V   + 
Sbjct: 177 LNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMS 236

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            S F  D  T       LC E R  +A  +  +   F  K D    T +I+GL    +  
Sbjct: 237 ESGFCMDRFTVGCFAHALCKEGRWADALDMIER-EDF--KLDTVLCTHMISGLMEASYFD 293

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A++    M   +      C P+ +TY T+  G  K+  +   K +   M  E  NP+  
Sbjct: 294 EAMSFLHRMRCNS------CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPS 347

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN------------- 246
            + SL+  +C   D+  A  L   M   G  P  V +N+ +  +C               
Sbjct: 348 LFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAE 407

Query: 247 ----------------------------GKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
                                       GK D+A +L++ M++ G  PD S Y+ ++   
Sbjct: 408 KIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 467

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   +V +A  LF  M+  G   DV++Y ILI+ +CK   IE A  L+ EM S G  PTV
Sbjct: 468 CHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTV 527

Query: 339 VTYNT 343
           VTY  
Sbjct: 528 VTYTA 532



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 22/250 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L     K K       +F R+   G  P+  TY  L++  CK G +S  F V
Sbjct: 525 PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEV 584

Query: 75  LGRIL----------------RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
             +++                R    P+ VT+ +L+ GLC   ++  A  L   + + GC
Sbjct: 585 YAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGC 644

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           +P+   Y  LI+G C+ G    A  +F +M     + G +  P   TY+++ D + K+G 
Sbjct: 645 EPNHIVYDALIDGFCKAGKIDSAQEVFLQMT----KCGYL--PSVHTYTSLIDRMFKDGR 698

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D A ++  +M  ++  P+VVTYT++I G C   +  +A  L   M ++G  PNVVT+  
Sbjct: 699 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 758

Query: 239 IMNELCKNGK 248
           +++ L ++ +
Sbjct: 759 LIDGLGQSWQ 768



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 6/163 (3%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V ++  L   L K    D    L   + S G  P+   Y+ LI+ FCK G++  
Sbjct: 607 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDS 666

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              V  ++ +  + P   T+TSLI  +  + R+  A  + +++    C P+V TYT +I+
Sbjct: 667 AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMID 726

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
           GLCR G +  AL L   M          C P+ +TY+ + DGL
Sbjct: 727 GLCRIGESEKALKLLSLMEEKG------CSPNVVTYTALIDGL 763



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML     P  +  ++ L     K    D+   +F ++   G  P ++TY  LI+  
Sbjct: 635 LLDAMLSSGCEPNHIV-YDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRM 693

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K GR+     VL ++L+   TP+ VT+T++I GLC      +A  L + +   GC P+V
Sbjct: 694 FKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 753

Query: 123 FTYTTLINGL 132
            TYT LI+GL
Sbjct: 754 VTYTALIDGL 763



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 3/178 (1%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y  + D L  +G    A+ L  ++ +E+          L+R  C    WNEA      + 
Sbjct: 142 YDALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLK 201

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D G +P+ VT+N ++  L   G++D   R+ + M + G   D           C  GR  
Sbjct: 202 DFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWA 261

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A ++   +E      D      +I+G  +    + A+S    M      P VVTY T
Sbjct: 262 DALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRT 316


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 172/339 (50%), Gaps = 9/339 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKM 65
           +LR  P P  V ++N +             L + + +   G + P+ YTY  +I+ +CK+
Sbjct: 176 LLRQMPRPNAV-TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 234

Query: 66  GRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
           GRV     V   +L +    P+AV + +LI G C + ++  A     ++   G    V T
Sbjct: 235 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 294

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  L++ L   G    A  L EEM    G  G+    D  TY+ + +G CKEG V KA E
Sbjct: 295 YNLLVHALFMDGRGTEAYELVEEM----GGKGLAL--DVFTYNILINGHCKEGNVKKALE 348

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +F  M    +   VVTYTSLI          E   LF E + +G++P++V +N ++N   
Sbjct: 349 IFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 408

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
            +G +D A  ++  M +  + PD   YNTLM G CL GRV+ A++L   M   G   D+ 
Sbjct: 409 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLV 468

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +Y  LI+GY    +++ AL + +EM++KG  PT++TYN 
Sbjct: 469 TYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 507



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 138/263 (52%), Gaps = 6/263 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+L   L  +        L + +   GL  D++TYNILIN  CK G V     +  
Sbjct: 292 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFE 351

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + R       VT+TSLI  L  + ++ E   LF +    G +PD+  Y  LIN    +G
Sbjct: 352 NMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 411

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +   A  +  EM            PD +TY+T+  GLC  G VD+A++L  +M    I P
Sbjct: 412 NIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQP 465

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D+VTY +LI G+    D  +A  +  EMM++G  P ++T+N ++  LCKNG+ D+A  ++
Sbjct: 466 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 525

Query: 257 ELMIQIGVRPDASVYNTLMDGFC 279
           + M++ G+ PD S Y +L++G  
Sbjct: 526 KEMVENGITPDDSTYISLIEGLT 548



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 178/400 (44%), Gaps = 76/400 (19%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI----------------------GL 48
           H    P    N+L    A  + + T L L+ R+ S+                       L
Sbjct: 82  HLDGAPSSLPNLLLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAPAFAL 141

Query: 49  FPDLY---------TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F D++         T+NI++   C  G+ +        +LR    P+AVT+ ++I G C+
Sbjct: 142 FADMFRLRLPLCTTTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCS 197

Query: 100 ESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             R+  A  +  ++R  G   P+ +TY T+I+G C+ G    A+ +F+EM    GE    
Sbjct: 198 RGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLT-KGE---- 252

Query: 159 CKPDAITYSTITDGLCKEGFVD-----------------------------------KAK 183
            KP+A+ Y+ +  G C +G +D                                   +A 
Sbjct: 253 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 312

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           EL  +M  + +  DV TY  LI G C   +  +A  +F  M  +GV+  VVT+  ++  L
Sbjct: 313 ELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYAL 372

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G++ E  +L +  ++ G+RPD  +YN L++    +G ++RA E+   ME      D 
Sbjct: 373 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 432

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  L+ G C    ++ A  L  EM  +GI+P +VTYNT
Sbjct: 433 VTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNT 472



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 6/316 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ML      P    +N L G        DT L    R+   G+   + TYN+L++  
Sbjct: 243 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 302

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              GR +  + ++  +       D  T+  LI G C E  + +A  +F  +   G +  V
Sbjct: 303 FMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 362

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT+LI  L + G       LF+E            +PD + Y+ + +     G +D+A
Sbjct: 363 VTYTSLIYALSKKGQVQETDKLFDEAVRRG------IRPDLVLYNALINSHSTSGNIDRA 416

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+  +M+ + I PD VTY +L+RG C     +EA+ L  EM  +G+QP++VT+N +++ 
Sbjct: 417 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISG 476

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
               G + +A R+   M+  G  P    YN L+ G C  G+ + A+ +   M  NG   D
Sbjct: 477 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 536

Query: 303 VFSYGILINGYCKNKE 318
             +Y  LI G     E
Sbjct: 537 DSTYISLIEGLTTEDE 552


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 170/314 (54%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    ++MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLM 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYVPSVVT 418



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 155/285 (54%), Gaps = 6/285 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++L  M+ +G++ +   Y  +++ FC  G V    +L   M+ +G
Sbjct: 367 KMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/252 (35%), Positives = 134/252 (53%), Gaps = 6/252 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K    +    L   + + G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L +   P+ VTFT+LI G C   R+  A  ++ ++ +    PD+ TY TLI GLC+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L +EM+          KPD ITY+T+ DG CKEG ++ A E    M  ENI
Sbjct: 289 KGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENI 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V YT+LI G C      +A+ +  EM+  G++  + T+ +I+NE CK G +   S+
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSK 402

Query: 255 LLELMIQIGVRP 266
           L++ M + G  P
Sbjct: 403 LMKEMQRDGYVP 414



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 132/252 (52%), Gaps = 6/252 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F  L+   C E  I  A ++F  +  +G +P V ++ TL+NG  + G     LN    + 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGD----LNEGFRLK 194

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           N     GV  +PD  TYS + +GLCKE  +D A ELF +M D  + P+ VT+T+LI G C
Sbjct: 195 NAMQASGV--QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L++ M   G++PD  
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y TL+DG C  G +  A E    M       D  +Y  LI+G C+      A  +  EM
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 330 LSKGIRPTVVTY 341
           LS G++  + TY
Sbjct: 373 LSVGLKLEIGTY 384



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +    CKEG +  A+ +F  +    + P VV++ +L+ G+    D NE   L   M 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 73/123 (59%)

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           + E ++ G   ++  FN++M+  CK G++  A  + + + + G+RP    +NTLM+G+  
Sbjct: 124 YEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIK 183

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G +N    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  VT
Sbjct: 184 LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVT 243

Query: 341 YNT 343
           + T
Sbjct: 244 FTT 246


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 185/390 (47%), Gaps = 68/390 (17%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N+L   L++    D + S++  +    + P+++T N ++N +CK+G V    + + +I+
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIV 231

Query: 80  RSCFTPDAVTFTSLI-----------------------------------KGLCAESRIM 104
           ++  + D  T+TSLI                                    G C   R+ 
Sbjct: 232 QAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVD 291

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA--------------- 149
           EA  LF+++    C P V TYT +I  LC+ G    ALN+F+EM                
Sbjct: 292 EALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLI 351

Query: 150 ----------------NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                           NG  E G++  P  +TY+ + DG CK+G    A E+   M+  N
Sbjct: 352 CSLCEDSNFDDAKKILNGMLEKGLI--PSVVTYNALIDGYCKKGLSASALEILSLMESNN 409

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +P+  TY  LI GFC   + ++A  L  +M+++ +QPNVVT+N++++  CK G +  A 
Sbjct: 410 CSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAY 469

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +LL LM + G+ PD   Y+  +D  C  G V  A+ LF S++  G   +   Y  LI+GY
Sbjct: 470 KLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGY 529

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK  ++     L  +MLS G  P  +TYN+
Sbjct: 530 CKVGKVSDGRFLLDKMLSAGCVPNSITYNS 559



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 172/339 (50%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M   H   P V ++ +L   L ++ ++D    +   +   GL P + TYN LI+ +
Sbjct: 331 MFKEMTEKH-CQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGY 389

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G  +    +L  +  +  +P+A T+  LI G C    I +A +L  K+     +P+V
Sbjct: 390 CKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNV 449

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LI+G C+ G    A  L   M     E G+V  PD  TYS   D LCK G V++A
Sbjct: 450 VTYNILIHGQCKEGDLGSAYKLLSLM----NESGLV--PDEWTYSVFIDTLCKRGLVEEA 503

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + LF  +K++ I  + V Y++LI G+C     ++ + L  +M+  G  PN +T+N +++ 
Sbjct: 504 RSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDG 563

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK     EA  L+++MI+  + P A  Y  L+D        ++A ++F  M S G   D
Sbjct: 564 YCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPD 623

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           VF Y   I+ YC +  ++ A  L  +M +KGI P  + Y
Sbjct: 624 VFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLY 662



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 164/323 (50%), Gaps = 6/323 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L     + +  D  L LF +++    +P + TY ++I   C++GR +    +   +
Sbjct: 276 SYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEM 335

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+  T+T LI  LC +S   +A  +   +   G  P V TY  LI+G C+ G +
Sbjct: 336 TEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLS 395

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL +   M + N      C P+A TY+ +  G C+   + KA  L  KM +  + P+V
Sbjct: 396 ASALEILSLMESNN------CSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNV 449

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY  LI G C   D   A  L   M + G+ P+  T++V ++ LCK G ++EA  L E 
Sbjct: 450 VTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFES 509

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           + + G++ +  +Y+TL+DG+C  G+V+  + L   M S GC+ +  +Y  LI+GYCK K 
Sbjct: 510 LKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKN 569

Query: 319 IEGALSLYSEMLSKGIRPTVVTY 341
            + A  L   M+ + I P   TY
Sbjct: 570 FKEARLLVDIMIKRDIEPAADTY 592



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 159/305 (52%), Gaps = 6/305 (1%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           S+ +R+++      L  YN+L+    +   +     V   +L    TP+  T  +++ G 
Sbjct: 155 SMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGY 214

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C    ++EA    +K+   G   D FTYT+LI G CR  +   A  +F  M N       
Sbjct: 215 CKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKG----- 269

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
            C  + ++Y+ +  G C+   VD+A +LF +M ++N  P V TYT +I   C      EA
Sbjct: 270 -CLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEA 328

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +F EM ++  QPNV T+ V++  LC++   D+A ++L  M++ G+ P    YN L+DG
Sbjct: 329 LNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDG 388

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           +C  G    A E+   MESN C  +  +Y  LI G+C+ K I  A+SL  +ML + ++P 
Sbjct: 389 YCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPN 448

Query: 338 VVTYN 342
           VVTYN
Sbjct: 449 VVTYN 453



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 147/306 (48%), Gaps = 6/306 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     + K+    +SL  ++    L P++ TYNILI+  CK G +   + +
Sbjct: 412 PNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKL 471

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  S   PD  T++  I  LC    + EA +LF  L+  G K +   Y+TLI+G C+
Sbjct: 472 LSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCK 531

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L ++M +        C P++ITY+++ DG CKE    +A+ L   M   +I
Sbjct: 532 VGKVSDGRFLLDKMLSAG------CVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDI 585

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P   TYT LI      +++++A  +F +M+  G  P+V  +   ++  C +G++ +A  
Sbjct: 586 EPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEV 645

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  M   G+ PD  +Y   +D +   G ++ A  +   M   GC    ++Y  LI    
Sbjct: 646 LICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLS 705

Query: 315 KNKEIE 320
             K  E
Sbjct: 706 NAKPKE 711



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 157/364 (43%), Gaps = 47/364 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++NIL     K     +   L   +N  GL PD +TY++ I+  CK G V     +
Sbjct: 447 PNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSL 506

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       + V +++LI G C   ++ +   L  K+ + GC P+  TY +LI+G C+
Sbjct: 507 FESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCK 566

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A  L + M   + E      P A TY+ + D L K+   D+A ++F +M     
Sbjct: 567 EKNFKEARLLVDIMIKRDIE------PAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGS 620

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDV  YT+ I  +C      +A+ L  +M  +G+ P+ + + + ++   + G +D A  
Sbjct: 621 HPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFG 680

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK-------------------------- 288
           +L+ M ++G  P    Y+      CL   ++ AK                          
Sbjct: 681 ILKRMHEVGCEPSYYTYS------CLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCW 734

Query: 289 ---------ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
                    +LF  M  +GC  +  +YG  I G CK   +E A  L+  M  KG  P   
Sbjct: 735 RRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNED 794

Query: 340 TYNT 343
            YN+
Sbjct: 795 IYNS 798



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 144/335 (42%), Gaps = 35/335 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ IL   L K+  +D    +F ++ S G  PD++ Y   I+ +C  GR+    V+
Sbjct: 587 PAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVL 646

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      PD + +T  I        I  A  +  ++   GC+P  +TY+ LI  L  
Sbjct: 647 ICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSN 706

Query: 135 TGHTIV-----------------------------ALNLFEEMANGNGEFGVVCKPDAIT 165
                V                              L+LF +MA    E G  C P+A T
Sbjct: 707 AKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMA----EHG--CAPNANT 760

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y     GLCK G ++ A  LF  MK++  +P+   Y SL+   C    + EA      M+
Sbjct: 761 YGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMI 820

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           +    P++ +  +++  L   G  ++A R+    +Q     D  V+  L+DG    G  +
Sbjct: 821 ENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSD 880

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           +  +LF  ME+ GC     +Y +LI G+   +EI+
Sbjct: 881 KCSDLFGIMETQGCQIHPKTYSMLIEGFDGIQEID 915


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/331 (33%), Positives = 168/331 (50%), Gaps = 11/331 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +F ++          D+ LSL + +   G  P+   Y  LI+   K  RV+    
Sbjct: 214 PPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQ 273

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      PDA TF  +I GLC   RI EAA +  ++   G  PD  TY  L+NGLC
Sbjct: 274 LLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLC 333

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDE 192
           + G    A +LF  +           KP+ + ++T+  G    G +D AK +   M    
Sbjct: 334 KIGRVDAAKDLFYRIP----------KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSY 383

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            I PDV TY SLI G+        A  +  +M ++G +PNV ++ ++++  CK GK+DEA
Sbjct: 384 GIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             +L  M   G++P+   +N L+  FC   R+  A E+F  M   GC  DV+++  LI+G
Sbjct: 444 YNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            C+  EI+ AL L  +M+S+G+    VTYNT
Sbjct: 504 LCEVDEIKHALWLLRDMISEGVVANTVTYNT 534



 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 175/328 (53%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P VC++N L     K       L +   + + G  P++Y+Y IL++ FCK+G++   + V
Sbjct: 387 PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNV 446

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ V F  LI   C E RI EA  +F ++   GCKPDV+T+ +LI+GLC 
Sbjct: 447 LNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 506

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L  +M +     GVV   + +TY+T+ +   + G + +A++L  +M  +  
Sbjct: 507 VDEIKHALWLLRDMISE----GVVA--NTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY SLI+G C A + ++A+ LF +M+  G  P+ ++ N+++N LC++G ++EA  
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVE 620

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + M+  G  PD   +N+L++G C  GR+     +F  +++ G   D  ++  L++  C
Sbjct: 621 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLC 680

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +  A  L  E +  G  P   T++
Sbjct: 681 KGGFVYDACLLLDEGIEDGFVPNHRTWS 708



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 170/331 (51%), Gaps = 13/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   L K    D    LF R+      P++  +N LI+ F   GR+     V
Sbjct: 320 PDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAV 375

Query: 75  LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L  ++ S    PD  T+ SLI G   E  +  A  +   +R  GCKP+V++YT L++G C
Sbjct: 376 LSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFC 435

Query: 134 RTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           + G    A N+  EM A+G        KP+ + ++ +    CKE  + +A E+F +M  +
Sbjct: 436 KLGKIDEAYNVLNEMSADG-------LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              PDV T+ SLI G C  ++   A  L  +M+ +GV  N VT+N ++N   + G++ EA
Sbjct: 489 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +L+  M+  G   D   YN+L+ G C  G V++A+ LF  M  +G      S  ILING
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            C++  +E A+    EM+ +G  P +VT+N+
Sbjct: 609 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 639



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 163/332 (49%), Gaps = 6/332 (1%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P P  V    ++ G +   +  D    L   + S G+ PD+ TYN LI  + K G V   
Sbjct: 349 PKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLA 408

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             VL  +      P+  ++T L+ G C   +I EA  +  ++ A G KP+   +  LI+ 
Sbjct: 409 LEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA 468

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+      A+ +F EM          CKPD  T++++  GLC+   +  A  L   M  
Sbjct: 469 FCKEHRIPEAVEIFREMPRKG------CKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 522

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           E +  + VTY +LI  F    +  EA+ L  EM+ QG   + +T+N ++  LC+ G++D+
Sbjct: 523 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK 582

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  L E M++ G  P     N L++G C +G V  A E    M   G   D+ ++  LIN
Sbjct: 583 ARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLIN 642

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G C+   IE  L+++ ++ ++GI P  VT+NT
Sbjct: 643 GLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNT 674



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 4/185 (2%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C+P   +Y+ + + L        A  +F  M    I P + T+  +++ FC  N+ + A 
Sbjct: 178 CEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSAL 237

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M   G  PN V +  +++ L K  +++EA +LLE M  +G  PDA  +N ++ G 
Sbjct: 238 SLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 297

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   R+N A ++   M   G   D  +YG L+NG CK   ++ A  L+  +     +P +
Sbjct: 298 CKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI----PKPEI 353

Query: 339 VTYNT 343
           V +NT
Sbjct: 354 VIFNT 358



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 81/212 (38%), Gaps = 36/212 (16%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENI------------------------------- 194
           Y  +   L   G       L ++MKDE I                               
Sbjct: 114 YQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMR 173

Query: 195 -----NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
                 P   +Y  ++      N    A  +F +M+ + + P + TF V+M   C   ++
Sbjct: 174 NVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEI 233

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  LL  M + G  P++ +Y TL+       RVN A +L   M   GC+ D  ++  +
Sbjct: 234 DSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDV 293

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           I G CK   I  A  + + ML +G  P  +TY
Sbjct: 294 ILGLCKFDRINEAAKMVNRMLIRGFAPDDITY 325



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL-LELM 259
           Y  LI       ++     L I+M D+G+      F  IM +  K G   + +RL LE+ 
Sbjct: 114 YQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMR 173

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNR-AKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
                 P    YN +++   ++G  ++ A  +F  M S      +F++G+++  +C   E
Sbjct: 174 NVYSCEPTFKSYNVVLE-ILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNE 232

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           I+ ALSL  +M   G  P  V Y T
Sbjct: 233 IDSALSLLRDMTKHGCVPNSVIYQT 257



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 51/100 (51%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F   + +  S P + +FN L   L +    +  L++F++L + G+ PD  T+N L++  C
Sbjct: 621 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLC 680

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103
           K G V    ++L   +   F P+  T++ L++ +  +  +
Sbjct: 681 KGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETL 720


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 181/344 (52%), Gaps = 10/344 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M     SP PV  +N+L   L K      V  L   +   G FP+  TYN LI+  
Sbjct: 244 LLDEMQSEGCSPSPVI-YNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGL 302

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G++     +L R++ S   P+ VT+ +LI GL  + R M+ A L   +   G + + 
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQ 362

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+ LI+GL + G    A+ L+++MA         C+P+ + YS + DGLC+EG  ++A
Sbjct: 363 HIYSVLISGLFKEGKAEEAMTLWKKMAEKG------CRPNIVVYSAVIDGLCREGKPNEA 416

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           KE+   M      P+V TY+SL++GF       EA  ++ EM + G   N   ++V+++ 
Sbjct: 417 KEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDG 476

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM---ESNGC 299
           LC  G++ EA  +   M+ IG++PD   Y++++ G C  G ++ A +L+  M   E    
Sbjct: 477 LCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKS 536

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             DV +Y IL++G C  K++  A+ L + ML +G  P V+T NT
Sbjct: 537 QPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNT 580



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 177/344 (51%), Gaps = 11/344 (3%)

Query: 4   FDYM----LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           +DY+    + M+ SP  + SFN++   L K    D  + +F+ +      PD YTY  L+
Sbjct: 171 YDYVVNSNMNMNISPNGL-SFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLM 229

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +  CK  R+    ++L  +     +P  V +  LI GLC +  +     L   +   GC 
Sbjct: 230 DGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCF 289

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+  TY TLI+GLC  G    A++L E M +        C P+ +TY T+ +GL K+   
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK------CIPNDVTYGTLINGLVKQRRA 343

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
                L + M++     +   Y+ LI G        EA  L+ +M ++G +PN+V ++ +
Sbjct: 344 MDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAV 403

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LC+ GK +EA  +L  MI  G  P+   Y++LM GF  TG    A +++  M+  GC
Sbjct: 404 IDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGC 463

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            R+ F Y +LI+G C    ++ A+ ++S+ML+ GI+P  V Y++
Sbjct: 464 SRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSS 507



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 134/275 (48%), Gaps = 38/275 (13%)

Query: 105 EAAALFTKL-RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
           +A  LF ++   F CK  V ++ +++N +   G     L  ++ + N N    +   P+ 
Sbjct: 130 KAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNI--SPNG 187

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           ++++ +   LCK GFVD+A E+F  M ++   PD  TY +L+ G C     +EA  L  E
Sbjct: 188 LSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDE 247

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M  +G  P+ V +NV+++ LCK G +   ++L++ M   G  P+   YNTL+ G CL G+
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGK 307

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNK-------------------------- 317
           +++A  L   M S+ C+ +  +YG LING  K +                          
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSV 367

Query: 318 ---------EIEGALSLYSEMLSKGIRPTVVTYNT 343
                    + E A++L+ +M  KG RP +V Y+ 
Sbjct: 368 LISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSA 402



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 143/292 (48%), Gaps = 30/292 (10%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +++L   L K    +  ++L+K++   G  P++  Y+ +I+  C+ G+ +    +L  ++
Sbjct: 365 YSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMI 424

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            S   P+  T++SL+KG        EA  ++ ++   GC  + F Y+ LI+GLC  G   
Sbjct: 425 SSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVK 484

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM---KDENINP 196
            A+ ++ +M        +  KPD + YS++  GLC  G +D A +L+ +M   ++    P
Sbjct: 485 EAMMVWSKM------LTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQP 538

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL------CKNG--- 247
           DVVTY  L+ G C   D + A  L   M+D+G  P+V+T N  +N L      C+ G   
Sbjct: 539 DVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSF 598

Query: 248 ------------KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
                       ++  A +++E+M+   + P  S +  ++   C   ++N A
Sbjct: 599 LEELVARLLKRQRVSGACKIVEVMLGKYLAPKTSTWAMIVPEICKPKKINAA 650


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 177/337 (52%), Gaps = 6/337 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +L   P+P  V    ++ G +A  +  +    L+  +   G  PD YT+NI+I+   K G
Sbjct: 332 LLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKG 391

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     +L  ++   F P+ +T+T LI G C + R+ EAA +   + A G   +   Y 
Sbjct: 392 YLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYN 451

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI  LC+ G+   AL LF EM+      G  CKPD  T++++ +GLCK   +++A  L+
Sbjct: 452 CLICALCKDGNIEEALQLFGEMS------GKGCKPDIYTFNSLINGLCKNHKMEEALSLY 505

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M  E +  + VTY +L+  F   +   +A  L  EM+ +G   + +T+N ++  LCK 
Sbjct: 506 HDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKT 565

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +++   L E M+  G+ P     N L+ G C TG+VN A +    M   G   D+ +Y
Sbjct: 566 GAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTY 625

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LING CK   ++ A +L++++ S+GIRP  +TYNT
Sbjct: 626 NSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNT 662



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 163/330 (49%), Gaps = 11/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F ++   L      D+  SL + +   G  P+   Y  LI+  C+  RVS    +
Sbjct: 203 PTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQL 262

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +   C  PD  TF  +I GLC   RI EAA L  ++   G   D  TY  L++GLCR
Sbjct: 263 LEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCR 322

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE-LFLKMKDEN 193
            G    A  L  ++ N          P+ + Y+T+  G    G  ++AK+ L+  M    
Sbjct: 323 MGQVDEARALLNKIPN----------PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAG 372

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD  T+  +I G         A  L  EM+ +  +PNV+T+ +++N  CK G+++EA+
Sbjct: 373 YEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAA 432

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            ++  M   G+  +   YN L+   C  G +  A +LF  M   GC  D++++  LING 
Sbjct: 433 EIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGL 492

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CKN ++E ALSLY +M  +G+    VTYNT
Sbjct: 493 CKNHKMEEALSLYHDMFLEGVIANTVTYNT 522



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 168/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FNI+   L K  +  + L L   + +    P++ TY ILIN FCK GR+     +
Sbjct: 375 PDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEI 434

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +     + + V +  LI  LC +  I EA  LF ++   GCKPD++T+ +LINGLC+
Sbjct: 435 VNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCK 494

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL+L+ +M       GV+   + +TY+T+         + +A +L  +M     
Sbjct: 495 NHKMEEALSLYHDMFLE----GVIA--NTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGC 548

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY  LI+  C      +   LF EM+ +G+ P +++ N++++ LC+ GK+++A +
Sbjct: 549 PLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALK 608

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ MI  G+ PD   YN+L++G C  G V  A  LF  ++S G   D  +Y  LI+ +C
Sbjct: 609 FLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHC 668

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                  A  L  + +  G  P  VT++
Sbjct: 669 HEGMFNDACLLLYKGVDSGFIPNEVTWS 696



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 6/231 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L   L KN   +  LSL+  +   G+  +  TYN L++ F     +   F +
Sbjct: 480 PDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKL 539

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L      D +T+  LIK LC    + +   LF ++   G  P + +   LI+GLCR
Sbjct: 540 VDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCR 599

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    AL   ++M +          PD +TY+++ +GLCK G V +A  LF K++ E I
Sbjct: 600 TGKVNDALKFLQDMIHRG------LTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGI 653

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
            PD +TY +LI   C+   +N+A  L  + +D G  PN VT+++++N + K
Sbjct: 654 RPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVK 704



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 4/185 (2%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C P   +Y+ + D L        A  +F  M    ++P V T+  +++  C  ++ + A 
Sbjct: 166 CDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSAC 225

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M   G  PN V +  +++ LC+N ++ EA +LLE M  +   PD   +N ++ G 
Sbjct: 226 SLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGL 285

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  GR++ A +L   M   G   D  +YG L++G C+  +++ A +L    L+K   P  
Sbjct: 286 CRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARAL----LNKIPNPNT 341

Query: 339 VTYNT 343
           V YNT
Sbjct: 342 VLYNT 346



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI- 262
           LI       D+   + L  +M D+G+      F +IM    K G   +A+RLL  M  + 
Sbjct: 105 LIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVY 164

Query: 263 GVRPDASVYNTLMDGFCLTGRVNR-AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
              P    YN ++D   + G   R A  +F  M S G    V+++G+++   C   E++ 
Sbjct: 165 SCDPTFKSYNVVLD-ILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDS 223

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A SL  +M   G  P  V Y T
Sbjct: 224 ACSLLRDMAKHGCVPNSVIYQT 245


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 173/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 217 VLINGLCKESKMDGANELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 271 KQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 331 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYN 426



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++  A  LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A +L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +L   M  +G    V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 153 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 212

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 213 YTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 272

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P   TY T
Sbjct: 273 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 322



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC       A +L E + +  G+      F  V       + D   +
Sbjct: 16  RHTLHSYCTMIHFLCTHQMLSEAKSLIEVVVSRKGKGSASAVFAAVLETKGNQRSDIYVF 75

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++  +     T   ++        +      + E+++
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 135

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++ 
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   DV++Y +LING CK  +++GA  L+ EML KG+ P  VT+ T
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTT 252


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 178/341 (52%), Gaps = 8/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M R     P V  +N+L G L K K       LF  ++   L P+  T+N LI+ +
Sbjct: 88  LFETMKR-RKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGY 146

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G V     +  R+ +    P  +TF SL+ GLC   RI EA  +  +++  G  PD 
Sbjct: 147 CKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDG 206

Query: 123 FTYTTLINGLCRTGHTI-VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           FTY+ + +GL ++      AL+L+ E A G G      K D  T S + +GLCKEG V+K
Sbjct: 207 FTYSIIFDGLLKSDDGAGAALDLYRE-AIGKG-----VKIDNYTCSILLNGLCKEGKVEK 260

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+E+   + +  + P  V Y +++ G+C   D + A     +M  +G++PN + FN +++
Sbjct: 261 AEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVID 320

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
           + C+   +D+A   ++ M+  G+ P    YN L+DG+      +R  ++   ME NG   
Sbjct: 321 KFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKP 380

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +V SYG LIN  CK+ +I  A  +  +M+ +G+ P    YN
Sbjct: 381 NVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYN 421



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 178/341 (52%), Gaps = 8/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D+M R     P      ++   L ++K +D VL LFK +  +G  PD   Y   +   
Sbjct: 18  LYDFM-RQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAA 76

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K+G +     +   + R    P+   +  LI GLC E RI +A  LF ++      P+ 
Sbjct: 77  VKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNR 136

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+ TLI+G C+ G   VA+ L E M     E      P  IT++++  GLCK   +++A
Sbjct: 137 VTFNTLIDGYCKAGEVDVAIGLRERMKKEKVE------PSIITFNSLLSGLCKARRIEEA 190

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC-LFIEMMDQGVQPNVVTFNVIMN 241
           + +  ++K     PD  TY+ +  G   ++D   A   L+ E + +GV+ +  T ++++N
Sbjct: 191 RCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLN 250

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK GK+++A  +L+ +++ G+ P   +YNT+++G+C  G ++RA      MES G   
Sbjct: 251 GLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRP 310

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +  ++  +I+ +C+ + I+ A     +M+ KGI P+V TYN
Sbjct: 311 NCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYN 351



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 167/337 (49%), Gaps = 7/337 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           ++     P + +FN L   L K +  +    +   +   G  PD +TY+I+ +   K   
Sbjct: 162 MKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDD 221

Query: 68  VSPGFVVLGR-ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +   + L R  +      D  T + L+ GLC E ++ +A  +   L   G  P    Y 
Sbjct: 222 GAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYN 281

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           T++NG C+ G    A+   E+M +         +P+ I ++++ D  C+   +DKA+E  
Sbjct: 282 TIVNGYCQIGDMDRAILTIEQMESRG------LRPNCIAFNSVIDKFCEMQMIDKAEEWV 335

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            KM  + I P V TY  LI G+     ++    +  EM + G +PNV+++  ++N LCK+
Sbjct: 336 KKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKD 395

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           GK+ EA  +L  M+  GV P+A++YN L+DG C  G++  A   F  M  NG    + +Y
Sbjct: 396 GKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTY 455

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI G CK  +++ A  ++  + S G  P V+TYN+
Sbjct: 456 NSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNS 492



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 171/361 (47%), Gaps = 46/361 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN +     + +  D      K++   G+ P + TYNILI+ + ++   S  F +
Sbjct: 310 PNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQI 369

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P+ +++ SLI  LC + +I+EA  +   +   G  P+   Y  LI+G C 
Sbjct: 370 LEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCT 429

Query: 135 TGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G    AL  F+EM+ NG G          +TY+++  GLCK G + +A+E+F  +    
Sbjct: 430 VGKLREALRFFDEMSKNGIG-------ATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTG 482

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCL--------------------------------- 220
             PDV+TY SLI G  Y+N  N  KCL                                 
Sbjct: 483 HCPDVITYNSLISG--YSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLK 540

Query: 221 ---FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
              F EM+   + P+ V +N +++   + G + +A  L + M+ +GVRPD   YN+L+ G
Sbjct: 541 ETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILG 600

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
               G+++  K+L   M++ G + +  +Y +LI G+C  K+  GA   Y EML  G  P 
Sbjct: 601 HLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPN 660

Query: 338 V 338
           V
Sbjct: 661 V 661



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 152/323 (47%), Gaps = 7/323 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +IL   L K    +    + K L   GL P    YN ++N +C++G +    + + ++  
Sbjct: 246 SILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMES 305

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P+ + F S+I   C    I +A     K+   G  P V TY  LI+G  R      
Sbjct: 306 RGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSR 365

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
              + EEM   NGE     KP+ I+Y ++ + LCK+G + +A+ +   M    + P+   
Sbjct: 366 CFQILEEMEE-NGE-----KPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANI 419

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  LI G C      EA   F EM   G+   +VT+N ++  LCK GK+ EA  +  L+ 
Sbjct: 420 YNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLIT 479

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             G  PD   YN+L+ G+   G   +  EL+ +M+  G    + ++  LI+G C  + I+
Sbjct: 480 STGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISG-CSKEGIK 538

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
              +L++EML   + P  V YN 
Sbjct: 539 LKETLFNEMLQMNLSPDRVVYNA 561



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 164/335 (48%), Gaps = 10/335 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F I + M   +   P V S+  L  CL K+        + + +   G+ P+   YN+LI+
Sbjct: 367 FQILEEM-EENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLID 425

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C +G++         + ++      VT+ SLIKGLC   ++ EA  +F  + + G  P
Sbjct: 426 GSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCP 485

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV TY +LI+G    G++   L L+E M     + G+  KP   T+  +  G  KEG   
Sbjct: 486 DVITYNSLISGYSNAGNSQKCLELYETMK----KLGL--KPTINTFHPLISGCSKEGI-- 537

Query: 181 KAKE-LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           K KE LF +M   N++PD V Y ++I  +       +A  L  EM+D GV+P+  T+N +
Sbjct: 538 KLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSL 597

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +    K GK+ E   L++ M   G+ P+A  Y+ L+ G C     N A   +  M  NG 
Sbjct: 598 ILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGF 657

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + +V     L  G  K+  ++ A S+ SEM++ G+
Sbjct: 658 LPNVCICNELSTGLRKDGRLQEAQSICSEMIANGM 692



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 121/241 (50%), Gaps = 8/241 (3%)

Query: 97  LCAESRIM-EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
           +C+ES++  + + L+  +R  G  P       ++  L  +      L+LF+EM       
Sbjct: 5   VCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMV------ 58

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
           G+  +PD + Y        K G +  A ELF  MK   + P+V  Y  LI G C      
Sbjct: 59  GLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIR 118

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           +A+ LF EM  + + PN VTFN +++  CK G++D A  L E M +  V P    +N+L+
Sbjct: 119 DAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLL 178

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG-ALSLYSEMLSKGI 334
            G C   R+  A+ +   ++ NG + D F+Y I+ +G  K+ +  G AL LY E + KG+
Sbjct: 179 SGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGV 238

Query: 335 R 335
           +
Sbjct: 239 K 239



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%)

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +  EL+  M+ E   P       ++     +  ++    LF EM+  G +P+ + +   M
Sbjct: 14  QVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAM 73

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
               K G +  A  L E M +  V P+  VYN L+ G C   R+  A++LF  M     +
Sbjct: 74  LAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLV 133

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  ++  LI+GYCK  E++ A+ L   M  + + P+++T+N+
Sbjct: 134 PNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNS 176


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 158/290 (54%), Gaps = 6/290 (2%)

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
           +TY  L++  C  G V     V   +      PD   + +++ GLC   R  EA  L + 
Sbjct: 143 FTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSD 202

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
             A G +P+V  Y  LI+G C  G   +A+++FE M + NG     C P+  TY+ +  G
Sbjct: 203 AMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERM-DVNG-----CSPNVRTYTELISG 256

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CK   +D+A  LF +M D  + P+VVTYT+LI+G C     + A  L   M + G+ PN
Sbjct: 257 FCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPN 316

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
             T +V+++ LCK+ ++ EA  LL  +IQ G++ +  VY +L+DG C  GR   A  L  
Sbjct: 317 EWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQ 376

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++ S G + D  +Y  LI+G C+ KE+  A+ +  +M+ KG++P+ VTY 
Sbjct: 377 TLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYT 426



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 165/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L          +  + +F+R++  G  P++ TY  LI+ FCK  ++    ++
Sbjct: 210 PNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMML 269

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++ +   P+ VT+T+LI+G C++ ++  A  L   +   G  P+ +T + LI+ LC+
Sbjct: 270 FSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCK 329

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L   +           K + I Y+++ DGLCK G    A  L   +  +  
Sbjct: 330 HERVGEAQLLLGSLIQKG------IKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGF 383

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY+SLI G C   + +EA  +  +MM++GVQP+ VT+ +I++EL +    D + +
Sbjct: 384 VPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKK 443

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+ MI  G++PD   Y   +  +C  GR+  A+ + + M  +G   ++ +Y  LI GY 
Sbjct: 444 ILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYA 503

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                  A S +  M++ G +P   +Y 
Sbjct: 504 NLGLTSQAFSTFKHMVANGCKPNEESYT 531



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 150/297 (50%), Gaps = 6/297 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  P++  YN LI+ +C +G +     V  R+  +  +P+  T+T LI G C   ++  A
Sbjct: 207 GFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRA 266

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             LF+++   G  P+V TYT LI G C  G    A  L + M N     G+V  P+  T 
Sbjct: 267 MMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENS----GLV--PNEWTC 320

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S + D LCK   V +A+ L   +  + I  + + YTSLI G C A  +  A  L   ++ 
Sbjct: 321 SVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVS 380

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           QG  P+  T++ +++ LC+  ++ EA  +L+ M++ GV+P    Y  ++D        + 
Sbjct: 381 QGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADG 440

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +K++   M + G   DVF+Y I +  YC    +E A  +   M+  G+ P +VTYN 
Sbjct: 441 SKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNA 497



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 167/379 (44%), Gaps = 57/379 (15%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L      +   D    L + + + GL P+ +T ++LI+  CK  RV    ++
Sbjct: 280 PNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLL 339

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG +++     + + +TSLI GLC   R   A  L   L + G  PD  TY++LI+GLCR
Sbjct: 340 LGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCR 399

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ + ++M     E GV  +P  +TY+ I D L +E   D +K++  KM    I
Sbjct: 400 QKELSEAMLVLDDMM----EKGV--QPSPVTYTIIIDELVREVGADGSKKILDKMIAAGI 453

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM-------------- 240
            PDV TYT  +R +C+     +A+ + + M+D GV PN+VT+N ++              
Sbjct: 454 KPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFS 513

Query: 241 ------------NE-------------------------LCKNGKMDEASRLLELMIQIG 263
                       NE                         + K  +M     LLE M+++ 
Sbjct: 514 TFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQ 573

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           +  +  +YN  +   C   R++ AK L + M+S         Y  +I   C+ K +  AL
Sbjct: 574 LPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEAL 633

Query: 324 SLYSEMLSKGIRPTVVTYN 342
           +    M+  G  P + +Y 
Sbjct: 634 TFVDSMVKSGYIPQLESYR 652



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 6/220 (2%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TYTTLIN  C  G    +      +            PD+  Y++   G C+ G +  A 
Sbjct: 74  TYTTLINAYCLAGDLPASKRHLSSLLRAG------FAPDSHAYTSFVVGYCRAGLLAHAC 127

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            LF+ M          TYT+L+ G C A    EA  +F  M   G  P+   +  +++ L
Sbjct: 128 RLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGL 187

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  G+  EA  LL   +  G  P+  VYN L+DG+C  G +  A ++F  M+ NGC  +V
Sbjct: 188 CGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNV 247

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y  LI+G+CK+++++ A+ L+S M+  G+ P VVTY  
Sbjct: 248 RTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTA 287



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 142/373 (38%), Gaps = 57/373 (15%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +  L   L K   +     L + L S G  PD +TY+ LI+  C+   +S   +VL  ++
Sbjct: 355 YTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMM 414

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P  VT+T +I  L  E     +  +  K+ A G KPDVFTYT  +   C  G   
Sbjct: 415 EKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRME 474

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A ++   M +       VC P+ +TY+ +  G    G   +A   F  M      P+  
Sbjct: 475 DAEHMMLHMVDHG-----VC-PNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEE 528

Query: 200 TYTSLIR---------------------------------------------------GF 208
           +YT L+R                                                     
Sbjct: 529 SYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSL 588

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C  +  +EAK L IEM    + P+   +  I+   C+   + EA   ++ M++ G  P  
Sbjct: 589 CRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQL 648

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y  ++   C  G +  AK++F  M S     +  ++ ILI+G  +   +    SL S 
Sbjct: 649 ESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSV 708

Query: 329 MLSKGIRPTVVTY 341
           M  K  RP+   Y
Sbjct: 709 MEEKNYRPSDALY 721



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 100/266 (37%), Gaps = 24/266 (9%)

Query: 7   MLRM--HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           ML M  H   P + ++N L    A         S FK + + G  P+  +Y +L+    K
Sbjct: 480 MLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIK 539

Query: 65  ----------------MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108
                           +  +     +L  +++     +   +   +  LC   R+ EA  
Sbjct: 540 KESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKI 599

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           L  ++++    P    YT++I   CR      AL   + M       G +  P   +Y  
Sbjct: 600 LLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKS----GYI--PQLESYRH 653

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           I   LC+EG +  AK++F  M  +  N + + +  LI G        E   L   M ++ 
Sbjct: 654 IISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKN 713

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASR 254
            +P+   +  +  ++     + E +R
Sbjct: 714 YRPSDALYARLTGKITDANDIQEIAR 739


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 6/323 (1%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N L   L ++++++   S ++++     F +  + + L+ CF +M +      VL  +L+
Sbjct: 76  NNLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLK 135

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
             F  +   +  L+KGLC      +A +L  ++R     PDV +Y T+I G C       
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEK 195

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL L  EM  G+G     C    +T+  + D  CK G +D+A  L  +MK + +  D++ 
Sbjct: 196 ALQLANEM-QGSG-----CSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIV 249

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           YTSLIRGFC   + +  K LF E++++G  P  +T+N ++   CK G++ EAS + E M+
Sbjct: 250 YTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMM 309

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + GVRP+   Y  L+DG C  G+   A +L   M       +V +Y I+IN  CK+  + 
Sbjct: 310 ERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVA 369

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            AL +   M  +  RP  +TYN+
Sbjct: 370 DALEIVELMKKRRTRPDNITYNS 392



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 181/358 (50%), Gaps = 31/358 (8%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
            + ++ IL     K    D  + L K +   GL  DL  Y  LI  FC  G +  G  + 
Sbjct: 211 SLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALF 270

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             +L    +P A+T+ +LI+G C   R+ EA+ +F  +   G +P+V+TYT LI+GLC  
Sbjct: 271 DEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGV 330

Query: 136 GHTIVALNLFEEMANGNGEFGVV---------CK--------------------PDAITY 166
           G T  AL L   M   + E  VV         CK                    PD ITY
Sbjct: 331 GKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITY 390

Query: 167 STITDGLCKEGFVDKA-KELFLKMKDEN-INPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           +++  GLC +G +D+A K L+L +KD +  +PDV+++ +LI G C  N  ++A  ++  +
Sbjct: 391 NSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLL 450

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +++    ++VT N+++N   K+G +++A  L + +    + P++  Y T++DGFC TG +
Sbjct: 451 VEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGML 510

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           N AK L   M  +     VF Y  L++  CK   ++ A  L+ EM      P V+++N
Sbjct: 511 NVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFN 568



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 170/329 (51%), Gaps = 10/329 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++NIL   L +N  +   +SL + +    L PD+ +YN +I  FC+   +     +  
Sbjct: 142 VYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLAN 201

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +  S  +   VT+  LI   C   ++ EA  L  +++  G + D+  YT+LI G C  G
Sbjct: 202 EMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCG 261

Query: 137 HTIVALNLFEE-MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                  LF+E +  G+        P AITY+T+  G CK G + +A E+F  M +  + 
Sbjct: 262 ELDRGKALFDEVLERGDS-------PCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVR 314

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+V TYT LI G C      EA  L   M+ +  +PNVVT+N+I+N+LCK+  + +A  +
Sbjct: 315 PNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEI 374

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--ESNGCMRDVFSYGILINGY 313
           +ELM +   RPD   YN+L+ G C  G ++ A +L   M  +S+    DV S+  LI+G 
Sbjct: 375 VELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGL 434

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK   +  AL +Y  ++ K     +VT N
Sbjct: 435 CKGNRLHQALDIYDLLVEKLGAGDIVTTN 463



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 165/338 (48%), Gaps = 8/338 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R +   P V S+N +     + K  +  L L   +   G    L T+ ILI+ FCK G+
Sbjct: 168 MRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGK 227

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L  +       D + +TSLI+G C    +    ALF ++   G  P   TY T
Sbjct: 228 MDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNT 287

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI G C+ G    A  +FE M     E GV  +P+  TY+ + DGLC  G   +A +L  
Sbjct: 288 LIRGFCKLGRLKEASEIFEFMM----ERGV--RPNVYTYTGLIDGLCGVGKTKEALQLLN 341

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M  ++  P+VVTY  +I   C  +   +A  +   M  +  +P+ +T+N ++  LC  G
Sbjct: 342 LMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKG 401

Query: 248 KMDEASRLLELMIQIG--VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            +DEAS+LL LM++      PD   +N L+ G C   R+++A +++  +       D+ +
Sbjct: 402 DLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVT 461

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             IL+N   K+ ++  A+ L+ ++ +  I P   TY T
Sbjct: 462 TNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTT 499



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 168/336 (50%), Gaps = 9/336 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF++M+      P V ++  L   L         L L   +      P++ TYNI+IN  
Sbjct: 304 IFEFMME-RGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKL 362

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKP 120
           CK   V+    ++  + +    PD +T+ SL+ GLCA+  + EA+ L   +   +    P
Sbjct: 363 CKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDP 422

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV ++  LI+GLC+      AL++++ +    G        D +T + + +   K G V+
Sbjct: 423 DVISFNALIHGLCKGNRLHQALDIYDLLVEKLG------AGDIVTTNILLNSTLKSGDVN 476

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA EL+ ++ +  I P+  TYT++I GFC     N AK L  +M    + P+V  +N ++
Sbjct: 477 KAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLL 536

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK G +D+A RL E M +    PD   +N ++DG    G +  A+ L V M   G  
Sbjct: 537 SSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLS 596

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
            D+F+Y  LIN + K   ++ A+S + +M+  G  P
Sbjct: 597 PDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEP 632



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 131/280 (46%), Gaps = 7/280 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P V SFN L   L K       L ++  L       D+ T NIL+N   K G V+   
Sbjct: 420 TDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAM 479

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +  +I  S   P++ T+T++I G C    +  A  L  K+R     P VF Y  L++ L
Sbjct: 480 ELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSL 539

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A  LFEEM   +        PD I+++ + DG  K G +  A+ L + M   
Sbjct: 540 CKKGTLDQAWRLFEEMQRDDS------FPDVISFNIMIDGSLKAGDIKSAESLLVGMSHA 593

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            ++PD+ TY+ LI  F      +EA   F +M+D G +P+    + ++      G+ D+ 
Sbjct: 594 GLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKL 653

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFC-LTGRVNRAKELF 291
           +  ++ ++   V  D  +  T+MD  C  +G ++ AK L 
Sbjct: 654 TEFVKKLVDKDVVLDKELTCTVMDYMCSSSGNMDIAKRLL 693



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 150/315 (47%), Gaps = 33/315 (10%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++      P V ++NI+   L K+      L + + +      PD  TYN L+   C  G
Sbjct: 342 LMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKG 401

Query: 67  RVSPGFVVLGRILR-SCFT-PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
            +     +L  +L+ S +T PD ++F +LI GLC  +R+ +A  ++  L       D+ T
Sbjct: 402 DLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVT 461

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANG----------------------NGEFGVVCK-- 160
              L+N   ++G    A+ L+++++N                       N   G++CK  
Sbjct: 462 TNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMR 521

Query: 161 -----PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
                P    Y+ +   LCK+G +D+A  LF +M+ ++  PDV+++  +I G   A D  
Sbjct: 522 LSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIK 581

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
            A+ L + M   G+ P++ T++ ++N   K G +DEA    + MI  G  PDA + ++++
Sbjct: 582 SAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVL 641

Query: 276 DGFCLT-GRVNRAKE 289
             +C++ G  ++  E
Sbjct: 642 K-YCISQGETDKLTE 655



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 8/191 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R+   PP V  +N L   L K    D    LF+ +     FPD+ ++NI+I+   K G 
Sbjct: 520 MRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGD 579

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L  +  +  +PD  T++ LI        + EA + F K+   G +PD     +
Sbjct: 580 IKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDS 639

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC-KEGFVDKAKELF 186
           ++      G T       +++ + +    VV   D     T+ D +C   G +D AK L 
Sbjct: 640 VLKYCISQGETDKLTEFVKKLVDKD----VVL--DKELTCTVMDYMCSSSGNMDIAKRL- 692

Query: 187 LKMKDENINPD 197
           L++ D+    D
Sbjct: 693 LRVADDKEEGD 703


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 166/328 (50%), Gaps = 12/328 (3%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F+ +  CL +      V+ +F+     GLF D   YNIL +  CK+G+V     +L  + 
Sbjct: 368 FSCILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELK 427

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                 D   +T+LI G   + + +EA +LF ++   G KPDV  Y  L  G  R     
Sbjct: 428 SMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDF 487

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A++L   M +   E      P++ T+  I +GLC  G V++A+E F  +K E++   V 
Sbjct: 488 EAMDLLNYMESQGVE------PNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESVEISVE 541

Query: 200 TYTSLIRGFCYA------NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            YT+L+ G+C A      ++  EA  L   M++  ++P+ V ++ I   LC NG M+ A 
Sbjct: 542 IYTALVNGYCEAALIEKSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAH 601

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L  L I  G  PDA  Y  +++G+C T  +  A ELF  M+  G   D  +Y I+INGY
Sbjct: 602 TLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGY 661

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           CK   +  A  L+ +M  +GI+P V+ Y
Sbjct: 662 CKMNCLREAHELFKDMKERGIKPDVIAY 689



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 157/319 (49%), Gaps = 8/319 (2%)

Query: 25  GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT 84
            C+++N   + +  L +   ++ + P++ ++N LIN   K   V     +  R       
Sbjct: 163 ACVSQNMFVEAIDFLLQTRKNVVILPNILSFNFLINRLVKHDEVDMALCLFVRFKSFGLI 222

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
            +  T+T +IK LC +        +F +++  G   D + Y T I GLC+   + +   +
Sbjct: 223 FNEYTYTIVIKALCKKGDWENVVRVFDEMKEAGVDDDSYCYATFIEGLCKNNRSDLGYAV 282

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
            ++    N             Y+ +  G C E  +D+A+ +FL+M+ + + PDV  Y +L
Sbjct: 283 LQDYRTRNAHV------HKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCAL 336

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           + G+C + ++++A  ++  M+ +G++ N V F+ I++ L + G+  E   + E   + G+
Sbjct: 337 VHGYCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESGL 396

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY-CKNKEIEGAL 323
             D   YN L D  C  G+V+ A  +   ++S     D+  Y  LINGY  + K IE A 
Sbjct: 397 FIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIE-AQ 455

Query: 324 SLYSEMLSKGIRPTVVTYN 342
           SL+ EM  +G +P VV YN
Sbjct: 456 SLFKEMEERGFKPDVVAYN 474



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 48/288 (16%)

Query: 31  KHYDTVL-------------SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           KHY T++             SLFK +   G  PD+  YN+L   F +         +L  
Sbjct: 436 KHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNY 495

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG- 136
           +      P++ T   +I+GLC+  ++ EA   F  L+    +  V  YT L+NG C    
Sbjct: 496 MESQGVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGYCEAAL 555

Query: 137 --------------HTIVALNLFEEMANGNGEFGVVC--------------------KPD 162
                          T++ +N+       +  F  +C                     PD
Sbjct: 556 IEKSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPD 615

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
           A+TY+ + +G CK   + +A ELF  MK+  I PD VTYT +I G+C  N   EA  LF 
Sbjct: 616 AVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFK 675

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
           +M ++G++P+V+ + VI+  L  +G  + A +L   MI +G+ P A++
Sbjct: 676 DMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMIDMGMTPGATL 723



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 26/188 (13%)

Query: 182 AKELFLKMKDEN-INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           A   F ++K+++  + ++ TYTS+IR  CY N   +   LF++++D   Q      NV+ 
Sbjct: 78  AYSYFTQLKNQHGFSHNIQTYTSIIRILCYYNLDRKLDSLFLDIIDHSKQDPCFEINVLF 137

Query: 241 NEL-------------------------CKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           + L                          +N  ++    LL+    + + P+   +N L+
Sbjct: 138 DSLFEGVNDVNEDHYLFNAFNGFVKACVSQNMFVEAIDFLLQTRKNVVILPNILSFNFLI 197

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +       V+ A  LFV  +S G + + ++Y I+I   CK  + E  + ++ EM   G+ 
Sbjct: 198 NRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVIKALCKKGDWENVVRVFDEMKEAGVD 257

Query: 336 PTVVTYNT 343
                Y T
Sbjct: 258 DDSYCYAT 265


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 154/291 (52%), Gaps = 7/291 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ P++ TYN LI+ FC    V    +++  +  +   PD  T+ +LI GLC   R+ E 
Sbjct: 5   GIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEV 64

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             LF +++A  C PDV TY+ LI G C+     +A  LF++M            PD +T+
Sbjct: 65  NRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDM------LKQAALPDVVTF 118

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
            T+ +G C  G VD A+ L  ++   + +PDV TYTSL+ GFC      EA  +   M  
Sbjct: 119 PTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAK 178

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
              QPNVV +  +++  C  GK   A +LLE M+  GV+P+A  Y +L+ GFC TG +  
Sbjct: 179 GECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEE 238

Query: 287 AKELFVSMESN-GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           A ++   +E N  C  D+F+Y ++++G C+   +  AL L   +   G  P
Sbjct: 239 AHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPP 289



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 145/299 (48%), Gaps = 7/299 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L          D+ L L + + + G  PD+ TYN LI+  CK GRV     +
Sbjct: 8   PNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNRL 67

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G +      PD +T++ LI G C   RI  A  LF  +      PDV T+ TL+ G C 
Sbjct: 68  FGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCN 127

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L EE+   +      C PD  TY+++ DG CK   + +A  +  +M     
Sbjct: 128 AGLVDDAERLLEEIVASD------CSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGEC 181

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV YT+LI  FC A     A  L  EM+  GVQPN +T+  ++   C  G ++EA +
Sbjct: 182 QPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHK 241

Query: 255 LLE-LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           +LE L      + D   Y  +MDG C TGR++ A EL  +++ +G       Y  LI G
Sbjct: 242 MLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRG 300



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           +G +P++ TY +LI+G C T      L L EEM          C PD  TY+T+ DGLCK
Sbjct: 4   WGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMT------ATGCLPDINTYNTLIDGLCK 57

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
            G V +   LF +MK +  NPDV+TY+ LI GFC  +  N A  LF +M+ Q   P+VVT
Sbjct: 58  TGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVT 117

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           F  ++   C  G +D+A RLLE ++     PD   Y +L+DGFC   R+  A  +   M 
Sbjct: 118 FPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMA 177

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              C  +V  Y  LI+ +C   +   A  L  EM+  G++P  +TY +
Sbjct: 178 KGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRS 225



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 151/324 (46%), Gaps = 31/324 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K      V  LF  + +    PD+ TY+ LI  FCK+ R++    +
Sbjct: 43  PDINTYNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTL 102

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+    PD VTF +L++G C    + +A  L  ++ A  C PDV+TYT+L++G C+
Sbjct: 103 FDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCK 162

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A  + + MA G       C+P+ + Y+ + D  C  G    A +L  +M    +
Sbjct: 163 VKRMVEAHRVLKRMAKGE------CQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGV 216

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            P+ +TY SLI GFC   D  EA  +   +  ++  + ++  + V+M+ LC+ G+M  A 
Sbjct: 217 QPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAAL 276

Query: 254 RLLELMIQIGV---------------------RPDASVYNTLMDGFCLTGRVNRAKELFV 292
            LLE + Q G                      RP+A VY  ++      GR  +A  L  
Sbjct: 277 ELLEAIKQSGTPPRHDIYVALIRGEMTLSRKGRPNAKVYEAVIQELAREGRHEKANALSD 336

Query: 293 SMESNGCMRDVFSYGILINGYCKN 316
            +  N   +  F   ++ N +C N
Sbjct: 337 ELLGNKASKTRF---VITNPHCVN 357


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 167/321 (52%), Gaps = 7/321 (2%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82
           + G   +  H      LF+ +  +G+ PD+  +N LI+  C+ G V     +L ++L+  
Sbjct: 187 VIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRG 246

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
            +P+  T    I+G C  + + EA  L   +   G  PDV TY TLI GLC+    + A 
Sbjct: 247 VSPNLFTVNIFIQGFCQRAMLNEAIRLLDGV-GRGLTPDVITYNTLICGLCKNFKVVEAE 305

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
           +   +M N   E      PD  TY++I DG CK G +  A ++      +   PD  TY 
Sbjct: 306 HYLRKMVNEGYE------PDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYC 359

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           SLI G C   D + A  +F E M++G++PN+V  N ++  L + G + +A +L+  M + 
Sbjct: 360 SLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSEN 419

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G  PD   YN +++G C  G V+ A  L +   + G + DVF++  LI+GYCK  +++ A
Sbjct: 420 GCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNA 479

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           + +   M + G+ P V+TYN+
Sbjct: 480 IEIVDRMWNHGVSPDVITYNS 500



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L KN          +++ + G  PD +TYN +I+ +CK+G +     +
Sbjct: 283 PDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQI 342

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L       F PD  T+ SLI GLC +  I  A  +F +    G KP++    TL+ GL +
Sbjct: 343 LRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQ 402

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + AL L  EM+  NG     C PD  TY+ + +GLCK G V  A  L +    +  
Sbjct: 403 QGLILQALKLMNEMSE-NG-----CSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGH 456

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV T+ +LI G+C     + A  +   M + GV P+V+T+N I+N LCK GK ++   
Sbjct: 457 LPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMG 516

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             +LM++ G  P+   YN L + FC   +V  A  L   M++ G   DV ++G L+ G+C
Sbjct: 517 TFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFC 576

Query: 315 KNKEIEGALSLYSEMLSK-GIRPTVVTYN 342
            N +++GA  L+  +  +     T+ TYN
Sbjct: 577 DNGDLDGAYQLFKRVDEQYKFSHTIATYN 605



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 179/365 (49%), Gaps = 44/365 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L   L +  H      L  ++   G+ P+L+T NI I  FC+   ++    +
Sbjct: 214 PDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRL 273

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT------- 127
           L  + R   TPD +T+ +LI GLC   +++EA     K+   G +PD FTY +       
Sbjct: 274 LDGVGRG-LTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCK 332

Query: 128 ----------------------------LINGLCRTGHTIVALNLFEE-MANGNGEFGVV 158
                                       LINGLC+ G    A+N+F E M  G       
Sbjct: 333 LGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKG------- 385

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
            KP+ +  +T+  GL ++G + +A +L  +M +   +PD+ TY  +I G C     ++A 
Sbjct: 386 LKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDAD 445

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L I+ + +G  P+V TFN +++  CK  K+D A  +++ M   GV PD   YN++++G 
Sbjct: 446 NLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGL 505

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G+       F  M   GC+ ++ +Y IL   +CK +++E AL+L  EM +KG+ P V
Sbjct: 506 CKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDV 565

Query: 339 VTYNT 343
           V + T
Sbjct: 566 VNFGT 570



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 162/332 (48%), Gaps = 44/332 (13%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PD  TY  LIN  C+ G +     V    +     P+ V   +L+KGL  +  I++A
Sbjct: 350 GFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQA 409

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL-FEEMANGNGEFGVVCKPDAIT 165
             L  ++   GC PD++TY  +INGLC+ G    A NL  + +A G+        PD  T
Sbjct: 410 LKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGH-------LPDVFT 462

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++T+ DG CK+  +D A E+  +M +  ++PDV+TY S++ G C A  + +    F  MM
Sbjct: 463 FNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMM 522

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG--- 282
           ++G  PN++T+N++    CK  K++EA  L+E M   G+ PD   + TLM GFC  G   
Sbjct: 523 EKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLD 582

Query: 283 ---------------------------------RVNRAKELFVSMESNGCMRDVFSYGIL 309
                                             +N A++LF  M  NG   D ++Y ++
Sbjct: 583 GAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVM 642

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           I+G+CK   I    S     + KG+ P++ T+
Sbjct: 643 IDGFCKTGNINSGYSFLLVKIEKGLIPSLTTF 674



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 164/326 (50%), Gaps = 7/326 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +   N L   L++       L L   ++  G  PD++TYN++IN  CK+G VS    +
Sbjct: 388 PNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNL 447

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +   +     PD  TF +LI G C + ++  A  +  ++   G  PDV TY +++NGLC+
Sbjct: 448 VIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCK 507

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G     +  F+ M          C P+ ITY+ +T+  CK   V++A  L  +M+++ +
Sbjct: 508 AGKYEDVMGTFKLMMEKG------CVPNIITYNILTESFCKARKVEEALNLIEEMQNKGL 561

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEAS 253
            PDVV + +L++GFC   D + A  LF  + +Q      + T+N+++N       M+ A 
Sbjct: 562 TPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAE 621

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L   M + G  PD+  Y  ++DGFC TG +N      +     G +  + ++G ++N  
Sbjct: 622 KLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCL 681

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVV 339
           C  + +  A+ +   M+ KGI P VV
Sbjct: 682 CLKRRVHEAVGIIHLMVHKGIVPEVV 707



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 159/308 (51%), Gaps = 7/308 (2%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            + +F+R++     P + +YN ++N   +         V  R+      PD  TFT  +K
Sbjct: 95  AVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMK 154

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
             C  SR   A  L   + + GC+     Y T+I G     H + A  LFEEM       
Sbjct: 155 SFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEM------L 208

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
           G+   PD + ++ +   LC++G V +++ L  K+    ++P++ T    I+GFC     N
Sbjct: 209 GLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLN 268

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA  L ++ + +G+ P+V+T+N ++  LCKN K+ EA   L  M+  G  PD   YN+++
Sbjct: 269 EAIRL-LDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSII 327

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           DG+C  G +  A ++       G + D  +Y  LING C++ +I+ A+++++E + KG++
Sbjct: 328 DGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLK 387

Query: 336 PTVVTYNT 343
           P +V  NT
Sbjct: 388 PNLVLCNT 395



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 42/255 (16%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            Y   +    R G    A+++FE M   N      C+P   +Y+ I + L +  + D+A 
Sbjct: 78  VYIGAMRNYGRKGKIQEAVDVFERMDFFN------CEPSVQSYNAIMNILVEYRYFDQAH 131

Query: 184 ELFLKMKDENINPDVVTYT-----------------------------------SLIRGF 208
           +++++M+D+ I PDV T+T                                   ++I GF
Sbjct: 132 KVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGF 191

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
              N   EA  LF EM+  G+ P+++ FN +++ LC+ G + E+ RLL  +++ GV P+ 
Sbjct: 192 YEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNL 251

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
              N  + GFC    +N A  L   +   G   DV +Y  LI G CKN ++  A     +
Sbjct: 252 FTVNIFIQGFCQRAMLNEAIRLLDGV-GRGLTPDVITYNTLICGLCKNFKVVEAEHYLRK 310

Query: 329 MLSKGIRPTVVTYNT 343
           M+++G  P   TYN+
Sbjct: 311 MVNEGYEPDGFTYNS 325



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 8/233 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I D M   H   P V ++N +   L K   Y+ V+  FK +   G  P++ TYNIL   F
Sbjct: 482 IVDRMWN-HGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESF 540

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPD 121
           CK  +V     ++  +     TPD V F +L+KG C    +  A  LF ++   +     
Sbjct: 541 CKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHT 600

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + TY  +IN      +  +A  LF +M   NG       PD+ TY  + DG CK G ++ 
Sbjct: 601 IATYNIMINAFAGKLNMNMAEKLFNKMCE-NG-----FSPDSYTYRVMIDGFCKTGNINS 654

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
                L   ++ + P + T+  ++   C     +EA  +   M+ +G+ P VV
Sbjct: 655 GYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVV 707



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV- 199
           AL +F  +   +G      K   +TY  + + L   G  +  +E+  + +  NI+  ++ 
Sbjct: 23  ALEIFNSVKKEDG-----FKHTLLTYKGMIEKLGFHGEFEAMEEVLAETR-MNIDNGLLE 76

Query: 200 -TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
             Y   +R +       EA  +F  M     +P+V ++N IMN L +    D+A ++   
Sbjct: 77  GVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMR 136

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING-YCKNK 317
           M   G+ PD   +   M  FC T R + A+ L  +M S GC     +Y  +I G Y +N 
Sbjct: 137 MRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENH 196

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYN 342
            +E A  L+ EML  GI P ++ +N
Sbjct: 197 RVE-AHELFEEMLGLGICPDIMAFN 220


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 78  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 137

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 138 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 197

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 198 VLINGLCKESKMDGANGLFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 251

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 252 KQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKE 311

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 312 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 371

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +++N +CK  ++     L  EM   G  P+VVTYN
Sbjct: 372 TMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYN 407



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 164/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 179

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++  A  LF ++   G  P+  T+TTLI+G C
Sbjct: 180 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A +L  +M  + 
Sbjct: 240 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 293

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 294 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 353

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +L   M+ +G    V +Y +L+NG
Sbjct: 354 KMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 134 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 193

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 194 YTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 253

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P   TY T
Sbjct: 254 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 303



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTITD 171
           +Y T+I+ LC       A +L E + +  G+      F  V       + D   +S +  
Sbjct: 2   SYCTMIHFLCTHQXLSEAKSLIEVVVSRKGKGSASAVFAAVLETXGNQRSDIYVFSGLIT 61

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   ++  +     T   ++        +      + E+++ G   
Sbjct: 62  AYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPA 121

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++    L 
Sbjct: 122 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 181

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +M ++G   DV++Y +LING CK  +++GA  L+ EML KG+ P  VT+ T
Sbjct: 182 SAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTT 233


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 172/333 (51%), Gaps = 10/333 (3%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L   L        V ++   + S G+ PD+ T+NILI   CK  ++ P  +V+  + 
Sbjct: 161 YNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMS 220

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                PD  TFT+L++G   E  +  A  +  ++   GC     T   L++G C+ G   
Sbjct: 221 SYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIE 280

Query: 140 VALNLFEEMANGNGEFGVV----------CKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            AL+  +EM+N       +          C+PD  TY+ + D LC  G + +A  L  +M
Sbjct: 281 EALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREM 340

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           +      +V+TY +LI GFC      EA+ +F +M  QG+  N VT+N +++ LCK+ ++
Sbjct: 341 EISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRV 400

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            EA++L++ MI  G++PD   YN+++  FC  G + +A ++  +M SNGC  D+ +YG L
Sbjct: 401 QEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTL 460

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I G CK   +E A  L   +  KG+  T   YN
Sbjct: 461 IGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYN 493



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 170/344 (49%), Gaps = 22/344 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FNIL   L K       + + + ++S GL PD  T+  L+  F + G +   F V
Sbjct: 191 PDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRV 250

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA----------------LFTKLRAFGC 118
             ++L +      VT   L+ G C E RI EA +                L+ +++  GC
Sbjct: 251 KEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGC 310

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           +PD FTY  LI+ LC  G    AL L  EM          C  + ITY+T+ DG CK   
Sbjct: 311 QPDEFTYNMLIDSLCYRGKLQEALGLLREMEISG------CARNVITYNTLIDGFCKNKK 364

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +++A+E+F +M+ + ++ + VTY +LI G C +    EA  L  +M+ +G++P+  T+N 
Sbjct: 365 IEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNS 424

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++   C+ G + +A+ +++ M   G  PD   Y TL+ G C  GRV  A  L  S++  G
Sbjct: 425 MLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKG 484

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +    +Y  +I    K K  + A+ L+ EM  KG  P   TY 
Sbjct: 485 MVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYK 528



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 159/333 (47%), Gaps = 19/333 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N+L   L         L L + +   G   ++ TYN LI+ FCK  ++     +
Sbjct: 312 PDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEI 371

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++     + ++VT+ +LI GLC   R+ EAA L  ++   G KPD FTY +++   CR
Sbjct: 372 FDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCR 431

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF--LKMKDE 192
            G    A ++ + M + NG     C+PD +TY T+  GLCK G V+ A  L   +++K  
Sbjct: 432 EGDIQKAADIVQTMTS-NG-----CEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGM 485

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG-KMDE 251
            + P    Y  +I+         EA  LF EM ++G  P+  T+ ++   L  +G  + E
Sbjct: 486 VLTPHA--YNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGE 543

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL--FVSMESNGCMRDVFSYGIL 309
           A   +  MI+ G  P+ S +  L +G C     +   +L   V  ++N    +V    ++
Sbjct: 544 AVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSMEDTLIKLVDLVMEKANFSQNEV----VM 599

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I G+ K ++ + AL+    +L    R + ++Y 
Sbjct: 600 IRGFLKIRKFQDALATLGGLLDS--RKSKISYK 630


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 217 VLINGLCKESKMDGANGLFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 271 KQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 331 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +++N +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYN 426



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 164/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++  A  LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A +L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +L   M+ +G    V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 153 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 212

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 213 YTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 272

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P   TY T
Sbjct: 273 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 322



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC       A +L E + +  G+      F  V       + D   +
Sbjct: 16  RHTLHSYCTMIHFLCTHQLLSEAKSLIEVVVSRKGKGSASAVFAAVLETKGNQRSDIYVF 75

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++  +     T   ++        +      + E+++
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 135

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++ 
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   DV++Y +LING CK  +++GA  L+ EML KG+ P  VT+ T
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTT 252


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 174/326 (53%), Gaps = 8/326 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           ++NI+   L  +   D  + L+  L   +   PD  T+  LI+  C+ G  +  F +   
Sbjct: 370 TYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE 429

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
              S    D  +++S+I GLC   R+++A  ++ K+   GCKP+   Y  LI+G C+   
Sbjct: 430 ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYR 489

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
           T  A+ ++ +MA+ NG     C P  ITY+T+ DGLCK     +A  +  +M +    PD
Sbjct: 490 TSDAVRIYSKMAD-NG-----CSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPD 543

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           + TY SLIRG       ++A  ++ +++ +G++ +V+  N++++ LC  GK+DEA  +  
Sbjct: 544 ITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFS 603

Query: 258 LMIQI-GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
            M +     P+   YNTLMDG   TG +++A  L+ S+  +G   D+ SY   I G C  
Sbjct: 604 DMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSC 663

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
             I   + L  E+LS+GI PTV+T+N
Sbjct: 664 DRIHEGIQLLDEVLSRGIIPTVITWN 689



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 176/340 (51%), Gaps = 6/340 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D +++   + P + ++N++   L K   +  V  +++R+ +  L PD+ TY ILI+  
Sbjct: 250 VWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGL 309

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G V     V   I+++    DA  + SL+KG C   R+ EA   +      G + ++
Sbjct: 310 CRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NL 368

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +I GL  +G    A+ L++ +     E  V C PD +T+ T+  GLC+ GF +KA
Sbjct: 369 RTYNIMIKGLFDSGMVDEAIELWDLL-----EKDVACIPDTVTFGTLIHGLCQNGFANKA 423

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +F + +      DV +Y+S+I G C      +A  ++ +M   G +PN   +N +++ 
Sbjct: 424 FTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISG 483

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+  +  +A R+   M   G  P    YNTL+DG C   +   A  +   M  NG   D
Sbjct: 484 FCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPD 543

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +YG LI G   +K+I+ ALS++ ++L KG++  V+ +N
Sbjct: 544 ITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHN 583



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 174/343 (50%), Gaps = 10/343 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINC 61
           + D M R    P  VC +N L G   K   ++ V+ ++ +L    G  P+L TYN++++ 
Sbjct: 215 LLDEMPRSRVQPDVVC-YNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDG 273

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK GR      V  R++ +   PD +T+  LI GLC    +  AA +++++   G   D
Sbjct: 274 LCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVID 333

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
              Y +L+ G C+ G    A   ++         G     +  TY+ +  GL   G VD+
Sbjct: 334 AAMYNSLVKGFCQAGRVQEAWKFWDSA-------GFAGLRNLRTYNIMIKGLFDSGMVDE 386

Query: 182 AKELF-LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           A EL+ L  KD    PD VT+ +LI G C     N+A  +F E    G Q +V +++ ++
Sbjct: 387 AIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMI 446

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N LC  G++ +A ++ E M + G +P++ +YN L+ GFC   R + A  ++  M  NGC 
Sbjct: 447 NGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCS 506

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             V +Y  LI+G CK ++ + A S+  EM+  G  P + TY +
Sbjct: 507 PTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGS 549



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 165/335 (49%), Gaps = 13/335 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-----PDLYTYNILINCFCKMGRVS 69
           P + S N L     + + +    + F  L S G F     P+L TYNI++   C  G + 
Sbjct: 117 PGIRSHNALLDAFVRARRFSDADAFFASL-SHGAFGRRIAPNLQTYNIVLRSLCARGDLD 175

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +   + R    PD +T+++L+ GL  + R+  A  L  ++     +PDV  Y  L+
Sbjct: 176 RAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALL 235

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G  + G     + +++++    G      +P+  TY+ + DGLCK G   +  E++ +M
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVKDPG-----ARPNLATYNVMLDGLCKFGRFKEVGEVWERM 290

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
              N+ PDV+TY  LI G C + D + A  ++ E++  G+  +   +N ++   C+ G++
Sbjct: 291 VANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRV 350

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYGI 308
            EA +  +     G+R +   YN ++ G   +G V+ A EL+  +E +  C+ D  ++G 
Sbjct: 351 QEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGT 409

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LI+G C+N     A +++ E    G +  V +Y++
Sbjct: 410 LIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSS 444



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 130/252 (51%), Gaps = 7/252 (2%)

Query: 97  LCAESRIMEAAALFTKLRAF----GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           L A SR +   A     RA     GC P + ++  L++   R      A   F  +++G 
Sbjct: 90  LSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHG- 148

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
             FG    P+  TY+ +   LC  G +D+A  LF  ++   + PD +TY++L+ G    +
Sbjct: 149 -AFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQD 207

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ-IGVRPDASVY 271
             + A  L  EM    VQP+VV +N ++    K G+ ++  R+ + +++  G RP+ + Y
Sbjct: 208 RLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATY 267

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N ++DG C  GR     E++  M +N    DV +YGILI+G C++ +++GA  +YSE++ 
Sbjct: 268 NVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIK 327

Query: 332 KGIRPTVVTYNT 343
            G+      YN+
Sbjct: 328 TGLVIDAAMYNS 339



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 126/230 (54%), Gaps = 5/230 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L     +       + ++ ++   G  P + TYN LI+  CK  +      V   ++
Sbjct: 477 YNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMV 536

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            + FTPD  T+ SLI+GL ++ +I +A +++ ++   G K DV  +  LI+GLC  G   
Sbjct: 537 ENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVD 596

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL++F +M          C P+ +TY+T+ DGL + G++DKA  L+  + ++ + PD++
Sbjct: 597 EALHVFSDMKEKKN-----CPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDII 651

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           +Y + I+G C  +  +E   L  E++ +G+ P V+T+N+++  + K G +
Sbjct: 652 SYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPI 701



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 43/95 (45%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M      PP + ++N L   L +  + D   +L+  +   GL PD+ +YN  I   
Sbjct: 601 VFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGL 660

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           C   R+  G  +L  +L     P  +T+  L++ +
Sbjct: 661 CSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAV 695


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 172/319 (53%), Gaps = 6/319 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++ +L   L KN        +++++   G+FP+LYTYN ++N  CK GR    F V   +
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                + + VT+ +LI GLC E +  EA  +  +++++   P++ TY TLI+G C  G  
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKL 354

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL+L  ++ +          P  +TY+ +  G C++G    A ++  +M++  I P  
Sbjct: 355 GKALSLCRDLKSRG------LSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSK 408

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTYT LI  F  +++   A  L   M + G+ P+V T++V+++  C  G+M+EASRL + 
Sbjct: 409 VTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKS 468

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M++  + P+  +YNT++ G+C  G   RA  LF  ME      +V SY  LI   CK ++
Sbjct: 469 MVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERK 528

Query: 319 IEGALSLYSEMLSKGIRPT 337
           ++ A  L  +M+  GI P+
Sbjct: 529 LKEAEDLVEKMIDSGIDPS 547



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 173/342 (50%), Gaps = 10/342 (2%)

Query: 4   FDYMLRMHP---SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           FD ++ +     SP  V    ++ GC  K +  +    LF  +   GL  + +TY +LI+
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGCCKKGE-IEKAKDLFFEMGKFGLVANEWTYTVLIH 241

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K G    GF +  ++      P+  T+  ++  LC + R  +A  +F ++R  G   
Sbjct: 242 GLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSC 301

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY TLI GLCR      A  + ++M +       V  P+ ITY+T+ DG C  G + 
Sbjct: 302 NIVTYNTLIGGLCREMKANEANKVMDQMKS------YVINPNLITYNTLIDGFCSVGKLG 355

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA  L   +K   ++P +VTY  L+ GFC   D + A  +  EM ++G++P+ VT+ +++
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   ++  M+ A +L   M ++G+ PD   Y+ L+ GFC+ G++N A  LF SM      
Sbjct: 416 DTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLE 475

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +   Y  +I GYCK      AL L+ +M  K + P V +Y+
Sbjct: 476 PNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYS 517



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 171/327 (52%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V SF I+     +    +    L   L   G  P++  Y  LI+  CK G +     +  
Sbjct: 163 VYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFF 222

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + +     +  T+T LI GL       +   ++ K++  G  P+++TY  ++N LC+ G
Sbjct: 223 EMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDG 282

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            T  A  +F+EM     E GV C  + +TY+T+  GLC+E   ++A ++  +MK   INP
Sbjct: 283 RTKDAFKVFDEMR----ERGVSC--NIVTYNTLIGGLCREMKANEANKVMDQMKSYVINP 336

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +++TY +LI GFC      +A  L  ++  +G+ P++VT+NV+++  C+ G    A++++
Sbjct: 337 NLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMV 396

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M + G++P    Y  L+D F  +  +  A +L  SME  G + DV +Y +LI+G+C  
Sbjct: 397 KEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIK 456

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++  A  L+  M+ K + P  V YNT
Sbjct: 457 GQMNEASRLFKSMVEKMLEPNEVIYNT 483



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 137/274 (50%), Gaps = 7/274 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M R       + ++N L G L +    +    +  ++ S  + P+L TYN LI+
Sbjct: 288 FKVFDEM-RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLID 346

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FC +G++     +   +     +P  VT+  L+ G C +     AA +  ++   G KP
Sbjct: 347 GFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKP 406

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
              TYT LI+   R+ +   A+ L   M     E G+V  PD  TYS +  G C +G ++
Sbjct: 407 SKVTYTILIDTFARSDNMETAIQLRSSME----ELGLV--PDVHTYSVLIHGFCIKGQMN 460

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  LF  M ++ + P+ V Y ++I G+C       A  LF +M ++ + PNV +++ ++
Sbjct: 461 EASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLI 520

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             LCK  K+ EA  L+E MI  G+ P  ++ N +
Sbjct: 521 RVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLI 554



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 112/216 (51%), Gaps = 35/216 (16%)

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           D  ++  +  G C+ G ++K+ +L +++++   +P+VV YT+LI G C   +  +AK LF
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 222 IE-----------------------------------MMDQGVQPNVVTFNVIMNELCKN 246
            E                                   M + GV PN+ T+N +MN+LCK+
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKD 281

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G+  +A ++ + M + GV  +   YNTL+ G C   + N A ++   M+S     ++ +Y
Sbjct: 282 GRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITY 341

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             LI+G+C   ++  ALSL  ++ S+G+ P++VTYN
Sbjct: 342 NTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYN 377



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 1/173 (0%)

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +  G  +  F   +  L    + E        Y  +I  +  +   + +   F EM+D+G
Sbjct: 65  VISGKIQSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKG 124

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
             P    FN ++  +  +   ++         +I V  D   +  ++ G C  G + ++ 
Sbjct: 125 FVPGSNCFNNLLTFVVGSSSFNQWWCFFN-ESKIKVVLDVYSFGIVIKGCCEAGEIEKSF 183

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +L V +   G   +V  Y  LI+G CK  EIE A  L+ EM   G+     TY
Sbjct: 184 DLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTY 236


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 174/326 (53%), Gaps = 8/326 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           ++NI+   L  +   D  + L+  L   +   PD  T+  LI+  C+ G  +  F +   
Sbjct: 370 TYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE 429

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
              S    D  +++S+I GLC   R+++A  ++ K+   GCKP+   Y  LI+G C+   
Sbjct: 430 ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYR 489

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
           T  A+ ++ +MA+ NG     C P  ITY+T+ DGLCK     +A  +  +M +    PD
Sbjct: 490 TSDAVRIYSKMAD-NG-----CSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPD 543

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           + TY SLIRG       ++A  ++ +++ +G++ +V+  N++++ LC  GK+DEA  +  
Sbjct: 544 ITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFS 603

Query: 258 LMIQI-GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
            M +     P+   YNTLMDG   TG +++A  L+ S+  +G   D+ SY   I G C  
Sbjct: 604 DMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSC 663

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
             I   + L  E+LS+GI PTV+T+N
Sbjct: 664 DRIHEGIQLLDEVLSRGIIPTVITWN 689



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 176/340 (51%), Gaps = 6/340 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D +++   + P + ++N++   L K   +  V  +++R+ +  L PD+ TY ILI+  
Sbjct: 250 VWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGL 309

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G V     V   I+++    DA  + SL+KG C   R+ EA   +      G + ++
Sbjct: 310 CRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NL 368

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +I GL  +G    A+ L++ +     E  V C PD +T+ T+  GLC+ GF +KA
Sbjct: 369 RTYNIMIKGLFDSGMVDEAIELWDLL-----EKDVACIPDTVTFGTLIHGLCQNGFANKA 423

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +F + +      DV +Y+S+I G C      +A  ++ +M   G +PN   +N +++ 
Sbjct: 424 FTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISG 483

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+  +  +A R+   M   G  P    YNTL+DG C   +   A  +   M  NG   D
Sbjct: 484 FCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPD 543

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +YG LI G   +K+I+ ALS++ ++L KG++  V+ +N
Sbjct: 544 ITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHN 583



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 174/343 (50%), Gaps = 10/343 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINC 61
           + D M R    P  VC +N L G   K   ++ V+ ++ +L    G  P+L TYN++++ 
Sbjct: 215 LLDEMPRSGVQPDVVC-YNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDG 273

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK GR      V  R++ +   PD +T+  LI GLC    +  AA +++++   G   D
Sbjct: 274 LCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVID 333

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
              Y +L+ G C+ G    A   ++         G     +  TY+ +  GL   G VD+
Sbjct: 334 AAMYNSLVKGFCQAGRVQEAWKFWDSA-------GFAGLRNLRTYNIMIKGLFDSGMVDE 386

Query: 182 AKELF-LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           A EL+ L  KD    PD VT+ +LI G C     N+A  +F E    G Q +V +++ ++
Sbjct: 387 AIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMI 446

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N LC  G++ +A ++ E M + G +P++ +YN L+ GFC   R + A  ++  M  NGC 
Sbjct: 447 NGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCS 506

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             V +Y  LI+G CK ++ + A S+  EM+  G  P + TY +
Sbjct: 507 PTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGS 549



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 166/335 (49%), Gaps = 13/335 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-----PDLYTYNILINCFCKMGRVS 69
           P + S N L     + + +    + F  L S G F     P+L TYNI++   C  G + 
Sbjct: 117 PGIRSHNALLDAFVRARRFSDADAFFASL-SHGAFGRRIAPNLQTYNIVLRSLCARGDLD 175

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +   + R    PD +T+++L+ GL  + R+  A  L  ++   G +PDV  Y  L+
Sbjct: 176 RAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALL 235

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G  + G     + +++++    G      +P+  TY+ + DGLCK G   +  E++ +M
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVKDPG-----ARPNLATYNVMLDGLCKFGRFKEVGEVWERM 290

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
              N+ PDV+TY  LI G C + D + A  ++ E++  G+  +   +N ++   C+ G++
Sbjct: 291 VANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRV 350

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYGI 308
            EA +  +     G+R +   YN ++ G   +G V+ A EL+  +E +  C+ D  ++G 
Sbjct: 351 QEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGT 409

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LI+G C+N     A +++ E    G +  V +Y++
Sbjct: 410 LIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSS 444



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 164/343 (47%), Gaps = 16/343 (4%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI-GLFPDLYTYNILINCFCKMGR 67
           ++ P PPP+   + L   +         L+  + L S    FP      +L +   ++  
Sbjct: 5   KLDPDPPPI---HRLLELIKSEPDATAALAHLELLVSTRPAFPP--PQPLLFHLLRRLAT 59

Query: 68  VSPGFV--VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF----GCKPD 121
            SP  +  +L  + R    P      +L+  L A SR +   A     RA     GC P 
Sbjct: 60  SSPSHLPCLLNLLPRLRHRPRFSESAALVV-LSAFSRAIMPDAALDAFRALPSILGCNPG 118

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + ++  L++   R      A   F  +++G   FG    P+  TY+ +   LC  G +D+
Sbjct: 119 IRSHNALLDAFVRARRFSDADAFFASLSHG--AFGRRIAPNLQTYNIVLRSLCARGDLDR 176

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  LF  ++   + PD +TY++L+ G    +  + A  L  EM   GVQP+VV +N ++ 
Sbjct: 177 AVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLG 236

Query: 242 ELCKNGKMDEASRLLELMIQ-IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
              K G+ ++  R+ + +++  G RP+ + YN ++DG C  GR     E++  M +N   
Sbjct: 237 GCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQ 296

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            DV +YGILI+G C++ +++GA  +YSE++  G+      YN+
Sbjct: 297 PDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNS 339



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 126/230 (54%), Gaps = 5/230 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L     +       + ++ ++   G  P + TYN LI+  CK  +      V   ++
Sbjct: 477 YNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMV 536

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            + FTPD  T+ SLI+GL ++ +I +A +++ ++   G K DV  +  LI+GLC  G   
Sbjct: 537 ENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVD 596

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL++F +M          C P+ +TY+T+ DGL + G++DKA  L+  + ++ + PD++
Sbjct: 597 EALHVFSDMKEKKN-----CPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDII 651

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           +Y + I+G C  +  +E   L  E++ +G+ P V+T+N+++  + K G +
Sbjct: 652 SYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPI 701



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 43/95 (45%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M      PP + ++N L   L +  + D   +L+  +   GL PD+ +YN  I   
Sbjct: 601 VFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGL 660

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           C   R+  G  +L  +L     P  +T+  L++ +
Sbjct: 661 CSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAV 695


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 176/339 (51%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D MLR+  SP      +++ G L K    +  L+L KR+   G+ P+++ YN LI+  
Sbjct: 319 MIDEMLRLRFSPSEAAVSSLVEG-LRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSL 377

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK        ++  R+ +    P+ VT++ LI   C   ++  A +   ++   G KP V
Sbjct: 378 CKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSV 437

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           + Y +LING C+ G    A +L  EM N   E      P  +TY+++  G C +G ++KA
Sbjct: 438 YPYNSLINGHCKFGDISAAESLMAEMINKKLE------PTVVTYTSLMGGYCSKGKINKA 491

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L+ +M  + I P + T+T+L+ G   A    +A  LF EM +  V+PN VT+NV++  
Sbjct: 492 LRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEG 551

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ G M +A   L  MI+ G+ PD   Y  L+ G CLTG+ + AK     +    C  +
Sbjct: 552 YCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELN 611

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              Y  L++G+C+  ++E ALS+  +M  +G+   +V Y
Sbjct: 612 EICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCY 650



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 178/341 (52%), Gaps = 6/341 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+      P V + + L   L K +H+   + LF  + ++G+ PD+Y Y  +I   
Sbjct: 178 VFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSL 237

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++  +S    ++ ++  +    + V +  LI GLC + ++ EA  +   L     KPDV
Sbjct: 238 CELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDV 297

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY TL+ GLC+     V L + +EM        +   P     S++ +GL K G V++A
Sbjct: 298 VTYCTLVCGLCKVQEFEVGLEMIDEM------LRLRFSPSEAAVSSLVEGLRKRGKVEEA 351

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L  ++ +  ++P++  Y +LI   C   +++EA+ LF  M   G+ PN VT++++++ 
Sbjct: 352 LNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDM 411

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ GK+D A   L  MI +G++P    YN+L++G C  G ++ A+ L   M +      
Sbjct: 412 FCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPT 471

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +Y  L+ GYC   +I  AL LY EM  KGI P++ T+ T
Sbjct: 472 VVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTT 512



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 185/446 (41%), Gaps = 112/446 (25%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M ++   P  V +++IL     +    DT LS    +  +GL P +Y YN LIN  
Sbjct: 389 LFDRMGKIGLCPNDV-TYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGH 447

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +S    ++  ++     P  VT+TSL+ G C++ +I +A  L+ ++   G  P +
Sbjct: 448 CKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSI 507

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +T+TTL++GL R G    A+ LF EMA  N       KP+ +TY+ + +G C+EG + KA
Sbjct: 508 YTFTTLLSGLFRAGLIRDAVKLFTEMAEWN------VKPNRVTYNVMIEGYCEEGNMSKA 561

Query: 183 KELFLKMKDENINPDV-----------------------------------VTYTSLIRG 207
            E   +M ++ I PD                                    + YT L+ G
Sbjct: 562 FEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHG 621

Query: 208 FCYANDWNEAKC-----------------------------------LFIEMMDQGVQPN 232
           FC      EA                                     L  EM D+G++P+
Sbjct: 622 FCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPD 681

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
            V +  +++   K G   EA  + +LMI  G  P+   Y  +++G C  G VN A+ L  
Sbjct: 682 DVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCS 741

Query: 293 SME---------SNGCMRDVFSYGI--------------------------LINGYCKNK 317
            M          + GC  D+ + G+                          LI G+C+  
Sbjct: 742 KMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQG 801

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            +E A  L + M+  G+ P  +TY T
Sbjct: 802 RMEEASELITRMIGDGVSPDCITYTT 827



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 170/393 (43%), Gaps = 64/393 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L +       + LF  +    + P+  TYN++I  +C+ G +S  F  
Sbjct: 505 PSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEF 564

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     PD  ++  LI GLC   +  EA      L    C+ +   YT L++G CR
Sbjct: 565 LNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCR 624

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC-----------------------------KPDAIT 165
            G    AL++ ++M     +  +VC                             KPD + 
Sbjct: 625 EGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVI 684

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL----- 220
           Y+++ D   K G   +A  ++  M +E   P+ VTYT++I G C A   NEA+ L     
Sbjct: 685 YTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMR 744

Query: 221 -------------FIEMMDQGVQ-----------------PNVVTFNVIMNELCKNGKMD 250
                        F++++ +GV                   N  T+N+++   C+ G+M+
Sbjct: 745 PGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRME 804

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EAS L+  MI  GV PD   Y T++   C    V +A EL+ SM   G   D  +Y  LI
Sbjct: 805 EASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLI 864

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G C   E+  A  L +EML +G++P   T  T
Sbjct: 865 HGCCVAGEMGKATELRNEMLRQGLKPNTETSET 897



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 41/213 (19%)

Query: 28  AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG----------RVSPGFVVLGR 77
           +K   +     ++  + + G  P+  TY  +IN  CK G          ++ PG  V  +
Sbjct: 693 SKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQ 752

Query: 78  ILRSCFT-------------------------PDAVTFTSLIKGLCAESRIMEAAALFTK 112
           +   CF                           +  T+  LI+G C + R+ EA+ L T+
Sbjct: 753 VTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITR 812

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           +   G  PD  TYTT+I+ LCR      A+ L+  M     E G+  +PD + Y+T+  G
Sbjct: 813 MIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMT----EKGI--RPDRVAYNTLIHG 866

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
            C  G + KA EL  +M  + + P+  T  + I
Sbjct: 867 CCVAGEMGKATELRNEMLRQGLKPNTETSETTI 899



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 47/112 (41%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N+L     +    +    L  R+   G+ PD  TY  +I+  C+   V     +   +
Sbjct: 789 TYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSM 848

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
                 PD V + +LI G C    + +A  L  ++   G KP+  T  T I+
Sbjct: 849 TEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTIS 900


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 165/314 (52%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   +K +   G    LY +NI+++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L + + A G +PDV+TY+ LINGLC+      A  LF 
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFN 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ D  CK G VD A E++ +M  +  +PD++TY +LI 
Sbjct: 231 EMLDR----GLV--PNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  + + L  EM   G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR + A+++F  M S G   D  +Y ++IN +CK  ++  A  L 
Sbjct: 345 DNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P VVT
Sbjct: 405 KEMQRDGHVPCVVT 418



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/253 (36%), Positives = 138/253 (54%), Gaps = 8/253 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     +    D    L   +++ G+ PD+YTY++LIN  CK  +V     +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANEL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P+ VTFT+LI   C    +  A  ++ ++ + G  PD+ TY TLI GLC+
Sbjct: 229 FNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCK 288

Query: 135 TGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G       L +EM+ NG        KPD ITY+T+ DG CKEG ++ A E   +M  E+
Sbjct: 289 KGDLKQVRALIDEMSMNG-------LKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKES 341

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I  D V YT+L+ G C     ++A+ +F EM+  G++P+  T+ +I+NE CK G +  AS
Sbjct: 342 IRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTAS 401

Query: 254 RLLELMIQIGVRP 266
           RLL+ M + G  P
Sbjct: 402 RLLKEMQRDGHVP 414



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 149/285 (52%), Gaps = 6/285 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNI+     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 133 PASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ EA  LF ++   G  P+  T+TTLI+  C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ ++++M +          PD ITY+T+  GLCK+G + + + L  +M    
Sbjct: 253 KNGMVDSAMEIYKQMLSQG------FSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+ D+A 
Sbjct: 307 LKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++   M+ +G++PD   Y  +++ FC  G V  A  L   M+ +G
Sbjct: 367 KMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDG 411



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 10  MHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           MH S   P V ++++L   L K    D    LF  +   GL P+  T+  LI+  CK G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGM 256

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +  ++L   F+PD +T+ +LI GLC +  + +  AL  ++   G KPD  TYTT
Sbjct: 257 VDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTT 316

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+G C+ G    A    + M   +       + D + Y+ +  GLC+EG  D A+++F 
Sbjct: 317 LIDGCCKEGDLETAFEFRKRMIKES------IRLDNVAYTALVSGLCQEGRADDAEKMFR 370

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           +M    + PD  TYT +I  FC   D   A  L  EM   G  P VVT
Sbjct: 371 EMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 99/178 (55%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +    CKEG + +A+ +F  +    + P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  K+DEA+ L   M+  G+ P+   + TL+D  C  G V+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S G   D+ +Y  LI G CK  +++   +L  EM   G++P  +TY T
Sbjct: 259 SAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTT 316



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + TY T+I+ LC     + A +L   + +  G+      F  +       + D   +
Sbjct: 10  RHTLHTYCTMIHFLCTHQMLLEAKSLIRIVVSRKGKDSASAVFAAILGTKGTQRSDIYVF 69

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GFV  A + F   K         T   ++        +      + E+++
Sbjct: 70  SGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEILE 129

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK G+M  A  + + + + G+RP    +NTLM+G+   G ++ 
Sbjct: 130 CGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDE 189

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   DV++Y +LING CK  +++ A  L++EML +G+ P  VT+ T
Sbjct: 190 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTT 246



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 46/117 (39%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           + M+   P   ++  L     K    +T     KR+    +  D   Y  L++  C+ GR
Sbjct: 302 MSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGR 361

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
                 +   +L     PD  T+T +I   C +  +  A+ L  +++  G  P V T
Sbjct: 362 ADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 171/327 (52%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L  +      + LF R++  G+FP+  TYN LIN   +  R+   FVV
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R+  +P+ VT+  +IKG C      +A  +   +   G   ++ TY T+I G C 
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+T  AL + + M +G       CKPD  +Y+ +  G CK   ++ A  LF +M D+ +
Sbjct: 473 SGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL 526

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTYT+LI G+C     + A  L   M   G +PNV T+NV+++ L K      A  
Sbjct: 527 CPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEE 586

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L ++MI+ G+ P+   Y  ++DG C  G  + A E+F  M   GC+ ++ +Y  LI    
Sbjct: 587 LCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALG 646

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  ++E A +L++E+   G+ P  +TY
Sbjct: 647 QEGKVEEAENLFAELERHGLIPDEITY 673



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L +N+       +   +   G  P++ TYN +I  +C +G      +V
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L+   + + VT+ ++IKG C       A  +   +R  GCKPD ++YT LI G C+
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF EM +       +C P+ +TY+ + DG CK+  +D A  L   MK    
Sbjct: 508 ISKMESAFGLFNEMVDDG-----LC-PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY  LI G    N+++ A+ L   M+++G+ PNVVT+  +++ LCKNG    A  
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   MI+ G  P+   Y++L+      G+V  A+ LF  +E +G + D  +Y  +I  Y 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
            + ++E A +    M+  G +PT+ TY
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTY 708



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 166/313 (53%), Gaps = 7/313 (2%)

Query: 31  KH-YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
           KH  D+ L +F ++   G  P+  TY+ LIN  C  GRV+  F ++  ++     P A T
Sbjct: 263 KHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT 322

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
            T  I  LC      +A  LF  ++  GC+P+V+TYT LI+GLC +G   VA+ LF  M+
Sbjct: 323 CTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMS 382

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
             +G F     P+ +TY+ + + L +   +  A  +   M     +P++VTY  +I+G+C
Sbjct: 383 R-DGVF-----PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
              D  +A  +   M+ +G   N+VT+N I+   C +G    A R+L+LM   G +PD  
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW 496

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y  L+ GFC   ++  A  LF  M  +G   +  +Y  LI+GYCK+++++ A SL   M
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 330 LSKGIRPTVVTYN 342
              G RP V TYN
Sbjct: 557 KRSGCRPNVQTYN 569



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 167/342 (48%), Gaps = 41/342 (11%)

Query: 35  TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94
            V+  + R+ S G+ P+L  YN +IN  CK G V+    ++ ++  S  +PD  T+TS+I
Sbjct: 198 AVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMI 257

Query: 95  KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            G C +  +  A  +F ++   GC+P+  TY+TLINGLC +G    A +L  EM      
Sbjct: 258 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI----L 313

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
            G++  P A T +     LC  G  + A  LF+ MK++   P+V TYT+LI G C +   
Sbjct: 314 HGIL--PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLL 371

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL---------------- 258
             A  LF  M   GV PN VT+N ++N L +N ++  A  +L L                
Sbjct: 372 KVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 259 -------------------MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
                              M+Q G   +   YNT++ G+C +G    A  +   M   GC
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 491

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             D +SY  LI G+CK  ++E A  L++EM+  G+ P  VTY
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 153/311 (49%), Gaps = 6/311 (1%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           Y+    LF  + + G  P++YTY  LI+  C  G +     +  R+ R    P+ VT+ +
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LI  L    RI  A  +   +   GC P++ TY  +I G C  G    A+ +   M    
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
               +V      TY+TI  G C  G    A  +   M+D    PD  +YT LI GFC  +
Sbjct: 456 HSANLV------TYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKIS 509

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
               A  LF EM+D G+ PN VT+  +++  CK+ K+D A+ LLE M + G RP+   YN
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+ G       + A+EL   M   G   +V +Y  +I+G CKN     AL ++++M+ +
Sbjct: 570 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 629

Query: 333 GIRPTVVTYNT 343
           G  P ++TY++
Sbjct: 630 GCLPNLLTYSS 640



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 161/324 (49%), Gaps = 7/324 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
            +++  C +K     T +S    L+  GL   L+ Y+ L+    ++G  +       R+L
Sbjct: 149 IHLIKSCHSKEAMART-MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ + + ++I  LC +  + +A  +  K+      PD FTYT++I G CR     
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL +F +MA         C+P+ +TYST+ +GLC  G V++A +L  +M    I P   
Sbjct: 268 SALQVFNQMAKEG------CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 321

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T T  I   C    + +A  LF++M ++G +PNV T+  +++ LC +G +  A  L   M
Sbjct: 322 TCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 381

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + GV P+   YN L++      R+  A  +   M  NGC  ++ +Y  +I GYC   + 
Sbjct: 382 SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDP 441

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           + A+ + + ML +G    +VTYNT
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNT 465



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 30/343 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  L     K    ++   LF  +   GL P+  TY  LI+ +CK  ++     +
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + RS   P+  T+  LI GL  ++    A  L   +   G  P+V TYT +I+GLC+
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 612

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T +AL +F +M          C P+ +TYS++   L +EG V++A+ LF +++   +
Sbjct: 613 NGSTSLALEMFNKMIEQG------CLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGL 666

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL----------- 243
            PD +TY  +I  +  +     A      M+  G QP + T+ V++  L           
Sbjct: 667 IPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRL 726

Query: 244 ---------CKNG----KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
                    C  G      D  S +   + ++       V N L+      GR   A EL
Sbjct: 727 AALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANEL 786

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
             SM S G   D  +Y  L+    + + ++ A+ ++  M ++G
Sbjct: 787 LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG 829



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 148/351 (42%), Gaps = 34/351 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K++  DT  SL + +   G  P++ TYN+LI+   K    S    +
Sbjct: 528 PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 587

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+ VT+T++I GLC       A  +F K+   GC P++ TY++LI  L +
Sbjct: 588 CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQ 647

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A NLF E+       G++  PD ITY  + +     G V+ A     +M     
Sbjct: 648 EGKVEEAENLFAELE----RHGLI--PDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 701

Query: 195 NPDVVTYTSLIRG-----------------------FCYANDWNEAKCLF---IEMMDQG 228
            P + TY  LI+G                       F Y     +A  +    +  +D G
Sbjct: 702 QPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPG 761

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           +  +V   N +++ L   G+  EA+ LL  MI  G+ PD   YN+L+        V+ A 
Sbjct: 762 L--SVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAM 819

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            +F  M + GC   +  Y  LI   C+    + A   +  ML +   P  V
Sbjct: 820 GVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDV 870



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 134/356 (37%), Gaps = 53/356 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L K  ++     L K +   G+FP++ TY  +I+  CK G  S    +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+ +T++SLI+ L  E ++ EA  LF +L   G  PD  TY  +I     
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 135 TGHTIVALNLFEEMANGNGE-----FGVVCK----------------PDAIT-----YST 168
           +G    A N    M     +     +GV+ K                PD +      Y T
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 169 ---------------------------ITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
                                      +   L   G   +A EL   M  + + PD   Y
Sbjct: 743 TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 802

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            SL+       + + A  +F  M  QG + ++  +  ++  LC+  +  EA    E M+ 
Sbjct: 803 NSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM 862

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
               PD  V   L+DG    G  +   E    ME+   M     Y IL     K +
Sbjct: 863 RTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAREASKKR 918



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 79/221 (35%), Gaps = 13/221 (5%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + + D  L   P   P CSF        +    D V  +  +L  +     +   N L++
Sbjct: 719 YLLADQRLAALPDVVPNCSFGY------QTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
                GR      +LG ++     PD   + SL+  L     +  A  +F  +   GC+ 
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            +  Y  LI  LC+      A   FE M            PD +  + + DGL ++G+ D
Sbjct: 833 HLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLRDGYKD 886

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE-AKCL 220
              E    M+     P    YT L R       W   A C+
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTILAREASKKRSWKHVAGCI 927


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 167/358 (46%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L ++   +     F  + ++GL PD+ TYN L+N +CK G +    ++
Sbjct: 341 PTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLL 400

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G +  +   P  +T+  LI G C    + EA  L  ++   GC PDV TYT L+ G   
Sbjct: 401 FGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHN 460

Query: 135 TGHTIVALNLFEEMANGNGE---------------FGVVCKP--------------DAIT 165
                +A   F+EM +   +                G + K               D +T
Sbjct: 461 ACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVT 520

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ + DGLCK G ++ AK+L +KM    + PD +TYT LI   C      EA+  F +M+
Sbjct: 521 YNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMI 580

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G+ P+ VT+ V ++  C+ G +  A      M++ GV P+   YN L+   C TGR  
Sbjct: 581 SDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQ 640

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A   F  M   G + + ++Y +LI+G CK    E A+  Y EM   GI P  +T+  
Sbjct: 641 LAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKA 698



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 153/309 (49%), Gaps = 9/309 (2%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           LS F  + S G+ PD+   N ++       R      V   +L+    P  VT+ +L+  
Sbjct: 187 LSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDS 246

Query: 97  LCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
              E R  + A L  ++  R  GC P+  T+  +I GL R G    A  + E M      
Sbjct: 247 FLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMR----- 301

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
             +  K  + TY+ +  GL  +GFV KA +L L+M++E I P VVTY ++I G   +   
Sbjct: 302 --LSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQV 359

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             A+  F+EM   G+QP+V+T+N ++N  CK G + EA  L   +   G+ P    YN L
Sbjct: 360 EAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNIL 419

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DG+C  G +  A+ L   M   GC+ DV +Y IL+ G      +  A   + EMLSKG+
Sbjct: 420 IDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGL 479

Query: 335 RPTVVTYNT 343
           +P    YNT
Sbjct: 480 QPDCFAYNT 488



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 163/334 (48%), Gaps = 9/334 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V   N +   L+    +D + ++   +  +G+ P + TYN L++ F K GR   
Sbjct: 196 HGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDK 255

Query: 71  GFVVLGRILR--SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
             ++L  +    S   P+ VT   +I GL  +  + EAA +   +R    K   FTY  L
Sbjct: 256 VAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMR-LSKKASSFTYNPL 314

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I GL   G    A +L  EM N     G++  P  +TY+ +  GL + G V+ A+  F++
Sbjct: 315 ITGLLAKGFVKKADDLQLEMENE----GIM--PTVVTYNAMIHGLLQSGQVEAAQVKFVE 368

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M+   + PDV+TY SL+ G+C A    EA  LF ++   G+ P V+T+N++++  C+ G 
Sbjct: 369 MRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGD 428

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           ++EA RL E M++ G  PD   Y  LM G      +  A+E F  M S G   D F+Y  
Sbjct: 429 LEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNT 488

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            I        I  A  L   M+ +GI    VTYN
Sbjct: 489 RIRAELTLGAIAKAFRLREVMMLEGISSDTVTYN 522



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 142/296 (47%), Gaps = 6/296 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ P + TYN +I+   + G+V    V    +      PD +T+ SL+ G C    + EA
Sbjct: 338 GIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEA 397

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             LF  LR  G  P V TY  LI+G CR G    A  L EEM          C PD  TY
Sbjct: 398 LLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQG------CLPDVCTY 451

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + +  G      +  A+E F +M  + + PD   Y + IR         +A  L   MM 
Sbjct: 452 TILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMML 511

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G+  + VT+N++++ LCK G +++A  L   M+  G++PD   Y  L+   C  G +  
Sbjct: 512 EGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLRE 571

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           A++ F  M S+G      +Y + I+ YC+   +  A   + +ML +G+ P  +TYN
Sbjct: 572 ARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYN 627



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 152/334 (45%), Gaps = 41/334 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     K       L LF  L   GL P + TYNILI+ +C++G +     +
Sbjct: 376 PDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRL 435

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT------- 127
              ++     PD  T+T L+KG      +  A   F ++ + G +PD F Y T       
Sbjct: 436 KEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELT 495

Query: 128 ----------------------------LINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                                       LI+GLC+TG+   A +L  +M + NG      
Sbjct: 496 LGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVH-NG-----L 549

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           +PD ITY+ +    C+ G + +A++ F  M  + + P  VTYT  I  +C   +   A  
Sbjct: 550 QPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYG 609

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            F +M+++GV+PN +T+NV+++ LC+ G+   A R    M++ G+ P+   Y  L+DG C
Sbjct: 610 WFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNC 669

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             G    A   +  M  NG   D  ++  L  G+
Sbjct: 670 KEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGF 703


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 164/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N   G L +    D  L + K +   GL PD +TY +L++ FCK  R     ++
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S   P+  T+T+LI G   E  I EA  +  ++   G K +V TY  +I G+ +
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A++LF EM     E      PD  TY+ + DG  K   + KA EL  +MK   +
Sbjct: 394 AGEMAKAMSLFNEMLMAGIE------PDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P   TY+ LI G C+++D  +A  +  +M+  GV+PNV  +  ++    +  + + A  
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL++MI  GV PD   YN L+ G C   +V  AK L V M   G   +  +YG  IN Y 
Sbjct: 508 LLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYS 567

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K+ EI+ A   + +MLS GI P  V Y
Sbjct: 568 KSGEIQVAERYFKDMLSSGIVPNNVIY 594



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 8/328 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N + G +AK       +SLF  +   G+ PD +TYN+LI+ + K   ++    +L 
Sbjct: 381 VVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLA 440

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +     TP   T++ LI GLC  S + +A  +  ++   G KP+VF Y TLI    +  
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQES 500

Query: 137 HTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
              +A+ L + M ANG         PD   Y+ +  GLC+   V++AK L + M ++ I 
Sbjct: 501 RYEMAIELLKIMIANG-------VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIK 553

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+  TY + I  +  + +   A+  F +M+  G+ PN V + +++   C  G   EA   
Sbjct: 554 PNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALST 613

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            + M++ G+ PD   Y+ ++      G+   A  +F+     G + DVF Y  LI+G+CK
Sbjct: 614 FKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCK 673

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +IE A  LY EML  GI P +V YNT
Sbjct: 674 EGDIEKASQLYDEMLHNGINPNIVVYNT 701



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 161/307 (52%), Gaps = 9/307 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           S+F    S G FP L   N L+    K   +   + V G ++ +   PD  T+T++IK  
Sbjct: 193 SVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAH 252

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE-EMANGNGEFG 156
           C    +++   + +++    CKP++FTY   I GLC+TG    AL + +  M  G G   
Sbjct: 253 CKVGDVIKGKMVLSEMEK-ECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLG--- 308

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
               PD  TY+ + DG CK+    +AK +F  M    +NP+  TYT+LI GF    +  E
Sbjct: 309 ----PDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEE 364

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  +  EM+ +G++ NVVT+N ++  + K G+M +A  L   M+  G+ PD   YN L+D
Sbjct: 365 ALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLID 424

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G+  +  + +A EL   M++       F+Y +LI+G C + +++ A  +  +M+  G++P
Sbjct: 425 GYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKP 484

Query: 337 TVVTYNT 343
            V  Y T
Sbjct: 485 NVFMYGT 491



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 164/333 (49%), Gaps = 16/333 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +C  N++   L  N        ++  +    + PD+YTY  +I   CK+G V  G +
Sbjct: 205 PTLICCNNLMRDLLKAN-MMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKM 263

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL  + + C  P+  T+ + I GLC    + EA  +   +   G  PD  TYT L++G C
Sbjct: 264 VLSEMEKEC-KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFC 322

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +   +  A  +FE M +          P+  TY+ + DG  KEG +++A    L++KDE 
Sbjct: 323 KQKRSKEAKLIFESMPSSG------LNPNRFTYTALIDGFIKEGNIEEA----LRIKDEM 372

Query: 194 INP----DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           I      +VVTY ++I G   A +  +A  LF EM+  G++P+  T+N++++   K+  M
Sbjct: 373 ITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDM 432

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +A  LL  M    + P    Y+ L+ G C +  + +A E+   M  NG   +VF YG L
Sbjct: 433 AKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTL 492

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I  Y +    E A+ L   M++ G+ P +  YN
Sbjct: 493 IKAYVQESRYEMAIELLKIMIANGVLPDLFCYN 525



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 145/292 (49%), Gaps = 7/292 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           +L  ++I I+ F  +G ++    V    +   F P  +   +L++ L   + +     ++
Sbjct: 171 NLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVY 230

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
             +      PDV+TYT +I   C+ G  I    +  EM          CKP+  TY+   
Sbjct: 231 GSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-------CKPNLFTYNAFI 283

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
            GLC+ G VD+A E+   M ++ + PD  TYT L+ GFC      EAK +F  M   G+ 
Sbjct: 284 GGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLN 343

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN  T+  +++   K G ++EA R+ + MI  G++ +   YN ++ G    G + +A  L
Sbjct: 344 PNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           F  M   G   D ++Y +LI+GY K+ ++  A  L +EM ++ + P+  TY+
Sbjct: 404 FNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYS 455



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 159/331 (48%), Gaps = 9/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ +   L+KN      + +F +    G+ PD++ YN LI+ FCK G +     +
Sbjct: 624 PDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQL 683

Query: 75  LGRILRSCFTPDAVTFTSLIK--GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
              +L +   P+ V + +LI   G C    + EA  LF ++ + G  PD + Y  LI+G 
Sbjct: 684 YDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGC 743

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            + G+   AL+LF E    +   G +       ++++ D  CK G V +A+ELF  M D+
Sbjct: 744 GKEGNLEKALSLFHEAQQKS--VGSLS-----AFNSLIDSFCKHGKVIEARELFDDMVDK 796

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + P++VTYT LI  +  A    EA+ LF++M  + + PN +T+  ++    + G   + 
Sbjct: 797 KLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKM 856

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L + M   G+  DA  Y  +   +C  G+   A +L       G   +   +  LI  
Sbjct: 857 ISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFH 916

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            CK K+I   L L SEM  + +  +  T NT
Sbjct: 917 LCKEKQISTVLELLSEMGKEELSLSSKTCNT 947



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 123/268 (45%), Gaps = 12/268 (4%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFK--RLNSIGLFPDLYTYNIL 58
           F +FD M+    SP       ++ GC  K  + +  LSLF   +  S+G    L  +N L
Sbjct: 718 FKLFDEMISKGISPDGYIYCILIDGC-GKEGNLEKALSLFHEAQQKSVG---SLSAFNSL 773

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           I+ FCK G+V     +   ++    TP+ VT+T LI        + EA  LF  +     
Sbjct: 774 IDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNI 833

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P+  TYT+L+    + G+    ++LF++M       G+ C  DAI Y  +    CKEG 
Sbjct: 834 IPNTLTYTSLLLSYNQIGNRFKMISLFKDME----ARGIAC--DAIAYGVMASAYCKEGK 887

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
             +A +L  K   E I  +   + +LI   C     +    L  EM  + +  +  T N 
Sbjct: 888 SLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNT 947

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRP 266
           ++    K+G  DEAS++L +M ++G  P
Sbjct: 948 LLLGFYKSGNEDEASKVLGVMQRLGWVP 975


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 163/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S N     L+K    D     F+ +   G+ P ++TYNI+I   CK G +     +
Sbjct: 95  PKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSL 154

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++ +   TPD VT+ +LI G      + E+  LF +++  GC+PDV TY  LIN  C+
Sbjct: 155 FEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCK 214

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A   F EM + +       KP+ I+YST+ D LCKEG +  A + F+ M    +
Sbjct: 215 FKGMLRAFEFFREMKDKD------LKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGL 268

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY+SLI   C A +  EA  L  EM+ + V  N+VT+  +++ LC+ G M+EA  
Sbjct: 269 LPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEE 328

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M + GV P+   Y  L+ G      +++A ELF  M       D+  +G ++ G C
Sbjct: 329 LFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLC 388

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              ++E    + +EM   GI    V Y T
Sbjct: 389 SESKLEECKIIMTEMKESGIGANPVIYTT 417



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 173/352 (49%), Gaps = 15/352 (4%)

Query: 1   FCIFDYMLRM---------HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD 51
           FC F  MLR              P V S++ L   L K       +  F  +  +GL P+
Sbjct: 212 FCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPN 271

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
            +TY+ LI+  CK G +   F++   +L+     + VT+T+L+ GLC E  + EA  LF 
Sbjct: 272 EFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFR 331

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
            +   G  P++  YT LI+G  +      A+ LF EM   +       KPD + + TI  
Sbjct: 332 AMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKD------IKPDILLWGTIVW 385

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           GLC E  +++ K +  +MK+  I  + V YT+L+  +  A +  EA  L  EM D G + 
Sbjct: 386 GLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEV 445

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
            VVTF  +++ LCK G + EA      M    ++P+ +VY  L+DG C    +  AK+LF
Sbjct: 446 TVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLF 505

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M+    + D  +Y  +I+G  K+   + AL++ ++M+  GI   +  Y +
Sbjct: 506 DEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTS 557



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    F+ LF  L +    +     F R+    + P   + N  ++   K G        
Sbjct: 60  PGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDF 119

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++ +   P   T+  +I  +C E  ++ A +LF +++  G  PD+ TY TLI+G  +
Sbjct: 120 FRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGK 179

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    ++ LFEEM        + C+PD ITY+ + +  CK   + +A E F +MKD+++
Sbjct: 180 IGLLDESVCLFEEMKF------MGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDL 233

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V++Y++LI   C       A   F++M   G+ PN  T++ +++  CK G + EA  
Sbjct: 234 KPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFM 293

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+Q  V  +   Y TL+DG C  G +N A+ELF +M   G   ++ +Y  LI+G+ 
Sbjct: 294 LADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHI 353

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K + ++ A+ L++EM  K I+P ++ + T
Sbjct: 354 KVRSMDKAMELFNEMREKDIKPDILLWGT 382



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 166/334 (49%), Gaps = 7/334 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D ML+ H     + ++  L   L +    +    LF+ +   G+ P+L  Y  LI+
Sbjct: 292 FMLADEMLQEHVDLN-IVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIH 350

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K+  +     +   +      PD + + +++ GLC+ES++ E   + T+++  G   
Sbjct: 351 GHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGA 410

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +   YTTL++   + G+   A+NL EEM +   E  VV      T+  + DGLCK G V 
Sbjct: 411 NPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVV------TFCALIDGLCKRGLVQ 464

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A   F +M D ++ P+V  YT+LI G C  N   +AK LF EM D+ + P+ + +  ++
Sbjct: 465 EAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMI 524

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   K+G   EA  +   M+++G+  D   Y +L+ G    G+V +A++    M   G +
Sbjct: 525 DGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGII 584

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            D      L+  + +   I+ A+ L +E++ KG+
Sbjct: 585 PDETLCTRLLRKHYELGNIDEAIELQNELVEKGL 618



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 99/186 (53%)

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           VC P    +  +   L + G ++ A + FL+M    + P   +  + +     A + + +
Sbjct: 57  VCVPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLS 116

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           +  F +M+  G+ P V T+N+++  +CK G M  A  L E M ++G+ PD   YNTL+DG
Sbjct: 117 RDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDG 176

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           +   G ++ +  LF  M+  GC  DV +Y  LIN +CK K +  A   + EM  K ++P 
Sbjct: 177 YGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPN 236

Query: 338 VVTYNT 343
           V++Y+T
Sbjct: 237 VISYST 242


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 171/327 (52%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L  +      + LF R++  G+FP+  TYN LIN   +  R+   FVV
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R+  +P+ VT+  +IKG C      +A  +   +   G   ++ TY T+I G C 
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+T  AL + + M +G       CKPD  +Y+ +  G CK   ++ A  LF +M D+ +
Sbjct: 473 SGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL 526

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTYT+LI G+C     + A  L   M   G +PNV T+NV+++ L K      A  
Sbjct: 527 CPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEE 586

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L ++MI+ G+ P+   Y  ++DG C  G  + A E+F  M   GC+ ++ +Y  LI    
Sbjct: 587 LCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALG 646

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  ++E A +L++E+   G+ P  +TY
Sbjct: 647 QEGKVEEAENLFAELERHGLIPDEITY 673



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L +N+       +   +   G  P++ TYN +I  +C +G      +V
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L+   + + VT+ ++IKG C       A  +   +R  GCKPD ++YT LI G C+
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF EM +       +C P+ +TY+ + DG CK+  +D A  L   MK    
Sbjct: 508 ISKMESAFGLFNEMVDDG-----LC-PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY  LI G    N+++ A+ L   M+++G+ PNVVT+  +++ LCKNG    A  
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   MI+ G  P+   Y++L+      G+V  A+ LF  +E +G + D  +Y  +I  Y 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
            + ++E A +    M+  G +PT+ TY
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTY 708



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 166/313 (53%), Gaps = 7/313 (2%)

Query: 31  KH-YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
           KH  D+ L +F ++   G  P+  TY+ LIN  C  GRV+  F ++  ++     P A T
Sbjct: 263 KHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT 322

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
            T  I  LC      +A  LF  ++  GC+P+V+TYT LI+GLC +G   VA+ LF  M+
Sbjct: 323 CTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMS 382

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
             +G F     P+ +TY+ + + L +   +  A  +   M     +P++VTY  +I+G+C
Sbjct: 383 R-DGVF-----PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
              D  +A  +   M+ +G   N+VT+N I+   C +G    A R+L+LM   G +PD  
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW 496

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y  L+ GFC   ++  A  LF  M  +G   +  +Y  LI+GYCK+++++ A SL   M
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 330 LSKGIRPTVVTYN 342
              G RP V TYN
Sbjct: 557 KRSGCRPNVQTYN 569



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 174/358 (48%), Gaps = 41/358 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++ L   L++      V+  + R+ S G+ P+L  YN +IN  CK G V+    ++ ++
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 241

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
             S  +PD  T+TS+I G C +  +  A  +F ++   GC+P+  TY+TLINGLC +G  
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRV 301

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A +L  EM       G++  P A T +     LC  G  + A  LF+ MK++   P+V
Sbjct: 302 NEAFDLIREMI----LHGIL--PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNV 355

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TYT+LI G C +     A  LF  M   GV PN VT+N ++N L +N ++  A  +L L
Sbjct: 356 YTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNL 415

Query: 259 -----------------------------------MIQIGVRPDASVYNTLMDGFCLTGR 283
                                              M+Q G   +   YNT++ G+C +G 
Sbjct: 416 MGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              A  +   M   GC  D +SY  LI G+CK  ++E A  L++EM+  G+ P  VTY
Sbjct: 476 TTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 153/311 (49%), Gaps = 6/311 (1%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           Y+    LF  + + G  P++YTY  LI+  C  G +     +  R+ R    P+ VT+ +
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LI  L    RI  A  +   +   GC P++ TY  +I G C  G    A+ +   M    
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
               +V      TY+TI  G C  G    A  +   M+D    PD  +YT LI GFC  +
Sbjct: 456 HSANLV------TYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKIS 509

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
               A  LF EM+D G+ PN VT+  +++  CK+ K+D A+ LLE M + G RP+   YN
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+ G       + A+EL   M   G   +V +Y  +I+G CKN     AL ++++M+ +
Sbjct: 570 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 629

Query: 333 GIRPTVVTYNT 343
           G  P ++TY++
Sbjct: 630 GCLPNLLTYSS 640



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 161/324 (49%), Gaps = 7/324 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
            +++  C +K     T +S    L+  GL   L+ Y+ L+    ++G  +       R+L
Sbjct: 149 IHLIKSCHSKEAMART-MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ + + ++I  LC +  + +A  +  K+      PD FTYT++I G CR     
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL +F +MA         C+P+ +TYST+ +GLC  G V++A +L  +M    I P   
Sbjct: 268 SALQVFNQMAKEG------CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 321

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T T  I   C    + +A  LF++M ++G +PNV T+  +++ LC +G +  A  L   M
Sbjct: 322 TCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 381

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + GV P+   YN L++      R+  A  +   M  NGC  ++ +Y  +I GYC   + 
Sbjct: 382 SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDP 441

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           + A+ + + ML +G    +VTYNT
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNT 465



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 30/343 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  L     K    ++   LF  +   GL P+  TY  LI+ +CK  ++     +
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + RS   P+  T+  LI GL  ++    A  L   +   G  P+V TYT +I+GLC+
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 612

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T +AL +F +M          C P+ +TYS++   L +EG V++A+ LF +++   +
Sbjct: 613 NGSTSLALEMFNKMIEQG------CLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGL 666

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL----------- 243
            PD +TY  +I  +  +     A      M+  G QP + T+ V++  L           
Sbjct: 667 IPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRL 726

Query: 244 ---------CKNG----KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
                    C  G      D  S +   + ++       V N L+      GR   A EL
Sbjct: 727 AALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANEL 786

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
             SM S G   D  +Y  L+    + + ++ A+ ++  M ++G
Sbjct: 787 LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG 829



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 148/351 (42%), Gaps = 34/351 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K++  DT  SL + +   G  P++ TYN+LI+   K    S    +
Sbjct: 528 PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 587

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+ VT+T++I GLC       A  +F K+   GC P++ TY++LI  L +
Sbjct: 588 CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQ 647

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A NLF E+       G++  PD ITY  + +     G V+ A     +M     
Sbjct: 648 EGKVEEAENLFAELE----RHGLI--PDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 701

Query: 195 NPDVVTYTSLIRG-----------------------FCYANDWNEAKCLF---IEMMDQG 228
            P + TY  LI+G                       F Y     +A  +    +  +D G
Sbjct: 702 QPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPG 761

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           +  +V   N +++ L   G+  EA+ LL  MI  G+ PD   YN+L+        V+ A 
Sbjct: 762 L--SVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAM 819

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            +F  M + GC   +  Y  LI   C+    + A   +  ML +   P  V
Sbjct: 820 GVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDV 870



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 134/356 (37%), Gaps = 53/356 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L K  ++     L K +   G+FP++ TY  +I+  CK G  S    +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+ +T++SLI+ L  E ++ EA  LF +L   G  PD  TY  +I     
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 135 TGHTIVALNLFEEMANGNGE-----FGVVCK----------------PDAIT-----YST 168
           +G    A N    M     +     +GV+ K                PD +      Y T
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 169 ---------------------------ITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
                                      +   L   G   +A EL   M  + + PD   Y
Sbjct: 743 TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 802

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            SL+       + + A  +F  M  QG + ++  +  ++  LC+  +  EA    E M+ 
Sbjct: 803 NSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM 862

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
               PD  V   L+DG    G  +   E    ME+   M     Y IL     K +
Sbjct: 863 RTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAREASKKR 918



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 75/206 (36%), Gaps = 12/206 (5%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + + D  L   P   P CSF        +    D V  +  +L  +     +   N L++
Sbjct: 719 YLLADQRLAALPDVVPNCSFGY------QTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
                GR      +LG ++     PD   + SL+  L     +  A  +F  +   GC+ 
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            +  Y  LI  LC+      A   FE M            PD +  + + DGL ++G+ D
Sbjct: 833 HLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLRDGYKD 886

Query: 181 KAKELFLKMKDENINPDVVTYTSLIR 206
              E    M+     P    YT L R
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTILAR 912


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 174/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 78  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 137

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 138 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 197

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 198 VLINGLCKESKMDDANELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 251

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A  L  EM  + ++P+ +T+  +++  CK 
Sbjct: 252 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKE 311

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M + G   D  +Y
Sbjct: 312 GDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTY 371

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 372 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYN 407



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 167/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 179

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 180 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A  L  +M  + 
Sbjct: 240 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKE 293

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 294 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAE 353

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD+  Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 354 KMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 98/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 134 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 193

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 194 YTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 253

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  LI G CK  +++ A  L  EM  K ++P  +TY T
Sbjct: 254 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTT 303



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTITD 171
           +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +  
Sbjct: 2   SYCTMIHFLCTQQMLSEAKSLIQVVVSRKGKGSASAVFAAIVETKGTQRSDLYVFSGLIT 61

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   ++        T   ++        +      + E+++ G   
Sbjct: 62  AYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPA 121

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++    L 
Sbjct: 122 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 181

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 182 SAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 233



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 62/164 (37%), Gaps = 36/164 (21%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I+  ML    SP  + ++N L   L K         L   ++   L PD  TY  LI+  
Sbjct: 250 IYKQMLSQSLSPDLI-TYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGC 308

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD- 121
           CK G +   F    R+++     D V +T+LI GLC E R ++A  +  ++   G KPD 
Sbjct: 309 CKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDS 368

Query: 122 ----------------------------------VFTYTTLING 131
                                             V TY  L+NG
Sbjct: 369 RTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412


>gi|302761606|ref|XP_002964225.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
 gi|300167954|gb|EFJ34558.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
          Length = 580

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 174/344 (50%), Gaps = 23/344 (6%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++R +  P  + ++N +  C++K    +    + K +      PD + Y  +IN FCK+G
Sbjct: 198 LMRGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKLG 257

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY- 125
                 V+LGR+  + + PDAV F  +I GLC  S+  EA  +       GC+PD  TY 
Sbjct: 258 NFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTYF 317

Query: 126 ---------------TTLINGLCRTGHTIVALNLFEEMANGNGEF-----GVVCKPDAIT 165
                          + L+  LC+TG    A  L E++ NG+ E      G  CKPD + 
Sbjct: 318 KLAQERKCPATNLLYSRLMKCLCKTGKVEAACQLLEDLTNGSRESEQLLGGDGCKPDVVM 377

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           YS + D LC  G  D+   +   M++  + PD V YT  +  FC +   ++A C  +EMM
Sbjct: 378 YSIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDA-CRLLEMM 436

Query: 226 -DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
            + G  P+V+++N ++  LC  G+ +EA RL ++M++ G+ P+   Y  L+   C T ++
Sbjct: 437 VEAGCYPDVISYNTLLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCSTKKL 496

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             A+ LF  M+ + C+ D+ +Y  LI G+ +N+ +  A  L  +
Sbjct: 497 EGARHLFNFMKLSKCVPDMETYKALILGHYQNEGVREARQLLEQ 540



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 157/365 (43%), Gaps = 35/365 (9%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR      P   +N++FG LAK + +  V  + + L +        T + L+  FCK   
Sbjct: 92  LRHQGQEFPAHIYNVIFGALAKLQRFQDVFRMVEDLMAKNFTFSDSTADALVRIFCKALA 151

Query: 68  VSPGFVVLGRILRSCFTPDAVTF--TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           V      L  +          TF    LI+GLC   RI EA  L+  +R      D+FTY
Sbjct: 152 VDKAVRFLKWMSSKGLQVAMSTFEYNCLIEGLCKGDRIDEALRLYELMRGNNVPADIFTY 211

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
             +I  + + G    A  + + M   +      CKPD   Y+ + +G CK G    A  L
Sbjct: 212 NNMIECISKLGMVEQAEKVLKTMEESD------CKPDKFIYTRVINGFCKLGNFKNAVVL 265

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE--- 242
             +MK+    PD V +  +I G C  + ++EA  +    ++ G +P+ VT+  +  E   
Sbjct: 266 LGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTYFKLAQERKC 325

Query: 243 -------------LCKNGKMDEASRLLE-----------LMIQIGVRPDASVYNTLMDGF 278
                        LCK GK++ A +LLE           L+   G +PD  +Y+ ++D  
Sbjct: 326 PATNLLYSRLMKCLCKTGKVEAACQLLEDLTNGSRESEQLLGGDGCKPDVVMYSIVIDAL 385

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G  +    +  +ME  G   D   Y I +  +C++  ++ A  L   M+  G  P V
Sbjct: 386 CAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEMMVEAGCYPDV 445

Query: 339 VTYNT 343
           ++YNT
Sbjct: 446 ISYNT 450



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 156/368 (42%), Gaps = 36/368 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +   M+    S  P  + +++  C A     D   ++F  L   G     + YN++    
Sbjct: 53  VLGEMMDQGCSLEPEAALDLVV-CYANGAMVDRAQAIFNELRHQGQEFPAHIYNVIFGAL 111

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP-- 120
            K+ R    F ++  ++   FT    T  +L++  C    + +A      + + G +   
Sbjct: 112 AKLQRFQDVFRMVEDLMAKNFTFSDSTADALVRIFCKALAVDKAVRFLKWMSSKGLQVAM 171

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
             F Y  LI GLC+      AL L+E M   N         D  TY+ + + + K G V+
Sbjct: 172 STFEYNCLIEGLCKGDRIDEALRLYELMRGNN------VPADIFTYNNMIECISKLGMVE 225

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A+++   M++ +  PD   YT +I GFC   ++  A  L   M + G  P+ V F+ I+
Sbjct: 226 QAEKVLKTMEESDCKPDKFIYTRVINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCII 285

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDAS----------------VYNTLMDGFCLTGRV 284
             LCK  K DEA  +L++ I+ G  PD                  +Y+ LM   C TG+V
Sbjct: 286 GGLCKTSKFDEALVVLKVSIEAGCEPDEVTYFKLAQERKCPATNLLYSRLMKCLCKTGKV 345

Query: 285 NRAKELFV-----SMES------NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
             A +L       S ES      +GC  DV  Y I+I+  C     +    +   M  +G
Sbjct: 346 EAACQLLEDLTNGSRESEQLLGGDGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERG 405

Query: 334 IRPTVVTY 341
           ++P  V Y
Sbjct: 406 VKPDAVVY 413



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 103/219 (47%), Gaps = 8/219 (3%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           L   G  PD+  Y+I+I+  C MG    GFVV+  +      PDAV +T  +   C  +R
Sbjct: 366 LGGDGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSAR 425

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + +A  L   +   GC PDV +Y TL+  LC  G    A  LF+ M     E G+  +P+
Sbjct: 426 LDDACRLLEMMVEAGCYPDVISYNTLLFALCSAGQEEEACRLFQVMV----ETGI--EPN 479

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
             TY+ +   LC    ++ A+ LF  MK     PD+ TY +LI G        EA+ L  
Sbjct: 480 VFTYTQLIRALCSTKKLEGARHLFNFMKLSKCVPDMETYKALILGHYQNEGVREARQLLE 539

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           +  D   + N      +++EL + G   E  +L  ++ Q
Sbjct: 540 QESDAFSRRN--PGKSLLSELHEAGNFYERKQLTAIIDQ 576



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 18/274 (6%)

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
           G+  RS +  D+  +  +++ L A  R+ +  ++  ++   GC  +      L+  +C  
Sbjct: 20  GKQNRSSYKHDSRIYNQVVRNLAAAKRLSDIDSVLGEMMDQGCSLEPEAALDLV--VCYA 77

Query: 136 GHTIV--ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD-- 191
              +V  A  +F E+ +   EF       A  Y+ I   L K   + + +++F  ++D  
Sbjct: 78  NGAMVDRAQAIFNELRHQGQEF------PAHIYNVIFGALAK---LQRFQDVFRMVEDLM 128

Query: 192 -ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF--NVIMNELCKNGK 248
            +N      T  +L+R FC A   ++A      M  +G+Q  + TF  N ++  LCK  +
Sbjct: 129 AKNFTFSDSTADALVRIFCKALAVDKAVRFLKWMSSKGLQVAMSTFEYNCLIEGLCKGDR 188

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +DEA RL ELM    V  D   YN +++     G V +A+++  +ME + C  D F Y  
Sbjct: 189 IDEALRLYELMRGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTR 248

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +ING+CK    + A+ L   M   G  P  V ++
Sbjct: 249 VINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFD 282


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 170/327 (51%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F+ L   L K         + + +   G  P++YT+  LI+  CK G     F +
Sbjct: 296 PNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRL 355

Query: 75  LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
             +++RS  + P+  T+T +I G C E ++  A  L  +++  G  P+  TYT LI+G C
Sbjct: 356 FLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHC 415

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+   A  L + M    G+ G    P+  TY+ I DGLCK+G   +A +L  +     
Sbjct: 416 KAGNFGRAYELMDLM----GKEGFT--PNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSG 469

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           ++ D VTYT LI  FC   D  +A  +F  M   G+QP++ T+NV++   C+  K++E+ 
Sbjct: 470 LHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESE 529

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L E  + +G+ P    Y +++ G+C  G ++ A + F  M   GC  D  +YG LI+G 
Sbjct: 530 KLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGL 589

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
           C   +++ A  LY  M+  G+ P  VT
Sbjct: 590 CNESKLDEACQLYETMIDNGLSPCEVT 616



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 162/310 (52%), Gaps = 7/310 (2%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D    +F  +    + PD  +Y +++  +C+MGR+S     L  ++   +  D  T T +
Sbjct: 210 DYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLM 269

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I     +  +  A   F K    G  P++  +++LINGLC+ G    A  + EEM     
Sbjct: 270 ISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGW 329

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYAN 212
                 KP+  T++ + DGLCK+G+ +KA  LFLK+ + +N  P+V TYT +I G+C   
Sbjct: 330 ------KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEE 383

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             N A+ L I M +QG+ PN  T+  +++  CK G    A  L++LM + G  P+   YN
Sbjct: 384 KLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYN 443

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            ++DG C  GR   A +L      +G   D  +Y ILI+ +C+  + + AL+++S M   
Sbjct: 444 AIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKV 503

Query: 333 GIRPTVVTYN 342
           G++P + TYN
Sbjct: 504 GLQPDMHTYN 513



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 174/341 (51%), Gaps = 6/341 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD ML      P   S+ ++     +      V    K +   G   D  T  ++I+ F
Sbjct: 215 VFDEMLD-RAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTF 273

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + G V+  F    + ++    P+ + F+SLI GLC    I +A  +  ++   G KP+V
Sbjct: 274 SEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNV 333

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +T+T LI+GLC+ G T  A  LF ++   +       KP+  TY+ + +G CKE  +++A
Sbjct: 334 YTHTALIDGLCKKGWTEKAFRLFLKLVRSDNY-----KPNVYTYTCMINGYCKEEKLNRA 388

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + L ++MK++ + P+  TYT LI G C A ++  A  L   M  +G  PN+ T+N I++ 
Sbjct: 389 EMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDG 448

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G+  EA +LL   ++ G+  D   Y  L+  FC      +A  +F  M   G   D
Sbjct: 449 LCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPD 508

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y +LI  +C+ K++E +  L+ E +  G+ PT  TY +
Sbjct: 509 MHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTS 549



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 160/346 (46%), Gaps = 12/346 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ++R     P V ++  +     K +  +    L  R+   GL P+  TY  LI+
Sbjct: 353 FRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLID 412

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G     + ++  + +  FTP+  T+ ++I GLC + R  EA  L  +    G   
Sbjct: 413 GHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHA 472

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT LI+  CR      AL +F  M      F V  +PD  TY+ +    C++  V+
Sbjct: 473 DKVTYTILISEFCRQTDNKQALAIFSRM------FKVGLQPDMHTYNVLIATFCRQKKVE 526

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           ++++LF +     + P   TYTS+I G+C     + A   F +M D G +P+ +T+  ++
Sbjct: 527 ESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALI 586

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LC   K+DEA +L E MI  G+ P      TL   +C  G    A  +   +E    +
Sbjct: 587 SGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEKKLWI 646

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI---RPTVVTYNT 343
           R V     LI   C  K++  A   + ++L K +   R T+  + T
Sbjct: 647 RTV---NTLIRKLCSEKKVGVAALFFHKLLDKDLNVDRITLAAFTT 689



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 42/250 (16%)

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           ++      G    A+N+  EM N     G+V K   + +  + D     GFVD A+++F 
Sbjct: 164 MVRSFSEIGKLKEAVNMVIEMQN----HGLVLKARILNF--VIDVALALGFVDYAEKVFD 217

Query: 188 KMKDENINPDVVTYTSLIRGFC-------------------YAND--------------- 213
           +M D  + PD  +Y  ++ G+C                   YA D               
Sbjct: 218 EMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKG 277

Query: 214 -WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             N A   F + +  G+ PN++ F+ ++N LCK G + +A  +LE M++ G +P+   + 
Sbjct: 278 FVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHT 337

Query: 273 TLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
            L+DG C  G   +A  LF+ +  S+    +V++Y  +INGYCK +++  A  L   M  
Sbjct: 338 ALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKE 397

Query: 332 KGIRPTVVTY 341
           +G+ P   TY
Sbjct: 398 QGLVPNTNTY 407



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 35/188 (18%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           + ++N++        ++R F       EA  + IEM + G+       N +++     G 
Sbjct: 149 LNNDNLDRATEVMQCMVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGF 208

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR------------------------- 283
           +D A ++ + M+   V PD++ Y  ++ G+C  GR                         
Sbjct: 209 VDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTL 268

Query: 284 ----------VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
                     VNRA   F      G   ++ ++  LING CK   I+ A  +  EM+ KG
Sbjct: 269 MISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKG 328

Query: 334 IRPTVVTY 341
            +P V T+
Sbjct: 329 WKPNVYTH 336


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 169/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEDSLECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPT 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
           AV+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF 
Sbjct: 171 AVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFN 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ VT+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLM 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYVPSVVT 418



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P   ++N L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++  A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G +  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 131/254 (51%), Gaps = 8/254 (3%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM- 148
           F  L+   C E  I  A ++F  +  +G +P   ++ TL+NG  R G       L   M 
Sbjct: 139 FNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQ 198

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           A+G        +PD  TYS + +GLCKE  +D A ELF +M D  + P+ VT+T+LI G 
Sbjct: 199 ASG-------VQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGH 251

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L++ M   G++PD 
Sbjct: 252 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y TL+DG C  G +  A E    M       D  +Y  LI+G C+      A  +  E
Sbjct: 312 VTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 371

Query: 329 MLSKGIRPTVVTYN 342
           MLS G++P + TY 
Sbjct: 372 MLSVGLKPEIGTYT 385



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 95/170 (55%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CKEG +  A+ +F  +    + P  V++ +L+ G+    D +E   L   M   GVQP+V
Sbjct: 147 CKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDV 206

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD A+ L   M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 207 YTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 266

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  VTY T
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTT 316



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 110/232 (47%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTITD 171
           +Y T+I+ LC       A  L + + +  G+      F  +       + D   +S +  
Sbjct: 15  SYCTMIHFLCTHQMLPEAKTLIQIVVSRKGQGSASAVFAAILETKGTQRSDIYVFSGLIT 74

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   K+        T   ++        +      + + ++ G   
Sbjct: 75  AYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEDSLECGYPA 134

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+  CK G++  A  + + + + G+RP A  +NTLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLK 194

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +M+++G   DV++Y +LING CK  +++ A  L++EML  G+ P  VT+ T
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTT 246


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 171/327 (52%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L  +      + LF R++  G+FP+  TYN LIN   +  R+   FVV
Sbjct: 353 PNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R+  +P+ VT+  +IKG C      +A  +   +   G   ++ TY T+I G C 
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+T  AL + + M +G       CKPD  +Y+ +  G CK   ++ A  LF +M D+ +
Sbjct: 473 SGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL 526

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTYT+LI G+C     + A  L   M   G +PNV T+NV+++ L K      A  
Sbjct: 527 CPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEE 586

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L ++MI+ G+ P+   Y  ++DG C  G  + A E+F  M   GC+ ++ +Y  LI    
Sbjct: 587 LCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALG 646

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  ++E A +L++E+   G+ P  +TY
Sbjct: 647 QEGKVEEAENLFAELERHGLIPDEITY 673



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L +N+       +   +   G  P++ TYN +I  +C +G      +V
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L+   + + VT+ ++IKG C       A  +   +R  GCKPD ++YT LI G C+
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF EM +       +C P+ +TY+ + DG CK+  +D A  L   MK    
Sbjct: 508 ISKMESAFGLFNEMVDDG-----LC-PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 561

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY  LI G    N+++ A+ L   M+++G+ PNVVT+  +++ LCKNG    A  
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   MI+ G  P+   Y++L+      G+V  A+ LF  +E +G + D  +Y  +I  Y 
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
            + ++E A +    M+  G +PT+ TY
Sbjct: 682 MSGKVEHAFNFLGRMIKAGCQPTLWTY 708



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 166/313 (53%), Gaps = 7/313 (2%)

Query: 31  KH-YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
           KH  D+ L +F ++   G  P+  TY+ LIN  C  GRV+  F ++  ++     P A T
Sbjct: 263 KHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT 322

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
            T  I  LC      +A  LF  ++  GC+P+V+TYT LI+GLC +G   VA+ LF  M+
Sbjct: 323 CTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMS 382

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
             +G F     P+ +TY+ + + L +   +  A  +   M     +P++VTY  +I+G+C
Sbjct: 383 R-DGVF-----PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
              D  +A  +   M+ +G   N+VT+N I+   C +G    A R+L+LM   G +PD  
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW 496

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y  L+ GFC   ++  A  LF  M  +G   +  +Y  LI+GYCK+++++ A SL   M
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 556

Query: 330 LSKGIRPTVVTYN 342
              G RP V TYN
Sbjct: 557 KRSGCRPNVQTYN 569



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 174/358 (48%), Gaps = 41/358 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++ L   L++      V+  + R+ S G+ P+L  YN +IN  CK G V+    ++ ++
Sbjct: 182 AYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKV 241

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
             S  +PD  T+TS+I G C +  +  A  +F ++   GC+P+  TY+TLINGLC +G  
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRV 301

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A +L  EM       G++  P A T +     LC  G  + A  LF+ MK++   P+V
Sbjct: 302 NEAFDLIREMI----LHGIL--PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNV 355

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TYT+LI G C +     A  LF  M   GV PN VT+N ++N L +N ++  A  +L L
Sbjct: 356 YTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNL 415

Query: 259 -----------------------------------MIQIGVRPDASVYNTLMDGFCLTGR 283
                                              M+Q G   +   YNT++ G+C +G 
Sbjct: 416 MGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              A  +   M   GC  D +SY  LI G+CK  ++E A  L++EM+  G+ P  VTY
Sbjct: 476 TTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 153/311 (49%), Gaps = 6/311 (1%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           Y+    LF  + + G  P++YTY  LI+  C  G +     +  R+ R    P+ VT+ +
Sbjct: 336 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNA 395

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LI  L    RI  A  +   +   GC P++ TY  +I G C  G    A+ +   M    
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
               +V      TY+TI  G C  G    A  +   M+D    PD  +YT LI GFC  +
Sbjct: 456 HSANLV------TYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKIS 509

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
               A  LF EM+D G+ PN VT+  +++  CK+ K+D A+ LLE M + G RP+   YN
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+ G       + A+EL   M   G   +V +Y  +I+G CKN     AL ++++M+ +
Sbjct: 570 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 629

Query: 333 GIRPTVVTYNT 343
           G  P ++TY++
Sbjct: 630 GCLPNLLTYSS 640



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 161/324 (49%), Gaps = 7/324 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
            +++  C +K     T +S    L+  GL   L+ Y+ L+    ++G  +       R+L
Sbjct: 149 IHLIKSCHSKEAMART-MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ + + ++I  LC +  + +A  +  K+      PD FTYT++I G CR     
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL +F +MA         C+P+ +TYST+ +GLC  G V++A +L  +M    I P   
Sbjct: 268 SALQVFNQMAKEG------CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 321

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T T  I   C    + +A  LF++M ++G +PNV T+  +++ LC +G +  A  L   M
Sbjct: 322 TCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRM 381

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + GV P+   YN L++      R+  A  +   M  NGC  ++ +Y  +I GYC   + 
Sbjct: 382 SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDP 441

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           + A+ + + ML +G    +VTYNT
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNT 465



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 30/343 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  L     K    ++   LF  +   GL P+  TY  LI+ +CK  ++     +
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 552

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + RS   P+  T+  LI GL  ++    A  L   +   G  P+V TYT +I+GLC+
Sbjct: 553 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 612

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T +AL +F +M          C P+ +TYS++   L +EG V++A+ LF +++   +
Sbjct: 613 NGSTSLALEMFNKMIEQG------CLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGL 666

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL----------- 243
            PD +TY  +I  +  +     A      M+  G QP + T+ V++  L           
Sbjct: 667 IPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRL 726

Query: 244 ---------CKNG----KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
                    C  G      D  S +   + ++       V N L+      GR   A EL
Sbjct: 727 AALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANEL 786

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
             SM S G   D  +Y  L+    + + ++ A+ ++  M ++G
Sbjct: 787 LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG 829



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 148/351 (42%), Gaps = 34/351 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K++  DT  SL + +   G  P++ TYN+LI+   K    S    +
Sbjct: 528 PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 587

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+ VT+T++I GLC       A  +F K+   GC P++ TY++LI  L +
Sbjct: 588 CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQ 647

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A NLF E+       G++  PD ITY  + +     G V+ A     +M     
Sbjct: 648 EGKVEEAENLFAELE----RHGLI--PDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 701

Query: 195 NPDVVTYTSLIRG-----------------------FCYANDWNEAKCLF---IEMMDQG 228
            P + TY  LI+G                       F Y     +A  +    +  +D G
Sbjct: 702 QPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPG 761

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           +  +V   N +++ L   G+  EA+ LL  MI  G+ PD   YN+L+        V+ A 
Sbjct: 762 L--SVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAM 819

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            +F  M + GC   +  Y  LI   C+    + A   +  ML +   P  V
Sbjct: 820 GVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDV 870



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 134/356 (37%), Gaps = 53/356 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L K  ++     L K +   G+FP++ TY  +I+  CK G  S    +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+ +T++SLI+ L  E ++ EA  LF +L   G  PD  TY  +I     
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 135 TGHTIVALNLFEEMANGNGE-----FGVVCK----------------PDAIT-----YST 168
           +G    A N    M     +     +GV+ K                PD +      Y T
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 742

Query: 169 ---------------------------ITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
                                      +   L   G   +A EL   M  + + PD   Y
Sbjct: 743 TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 802

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            SL+       + + A  +F  M  QG + ++  +  ++  LC+  +  EA    E M+ 
Sbjct: 803 NSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM 862

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
               PD  V   L+DG    G  +   E    ME+   M     Y IL     K +
Sbjct: 863 RTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAREASKKR 918



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 75/206 (36%), Gaps = 12/206 (5%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + + D  L   P   P CSF        +    D V  +  +L  +     +   N L++
Sbjct: 719 YLLADQRLAALPDVVPNCSFGY------QTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
                GR      +LG ++     PD   + SL+  L     +  A  +F  +   GC+ 
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            +  Y  LI  LC+      A   FE M            PD +  + + DGL ++G+ D
Sbjct: 833 HLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLRDGYKD 886

Query: 181 KAKELFLKMKDENINPDVVTYTSLIR 206
              E    M+     P    YT L R
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTILAR 912


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 182/328 (55%), Gaps = 9/328 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVVLGR 77
           ++N L   L  +      ++LF+     GL+ PD++++N++I   C+MG       ++ R
Sbjct: 181 AYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVER 240

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTG 136
           +     +PD +T   L+ GLC   ++ +   +  +L+  G C P+  TYT++I+G C+ G
Sbjct: 241 MTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAG 300

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A++++ +M     E G   +P+ +TY+ + +G  K   ++ A  ++ ++   +  P
Sbjct: 301 KMEDAMSVYNDML----ESGT--RPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPP 354

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DVVT++SLI G+C     ++AK ++ EM    +QPNV TF++I++ LCK  +  EA  +L
Sbjct: 355 DVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDIL 414

Query: 257 -ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            EL ++  + P   +YN ++D  C  G+V+ A  +   M+  GC  D ++Y ILI G+C 
Sbjct: 415 RELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCM 474

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              I  A++L+ +M+  G RP  +T N+
Sbjct: 475 KGRIPEAITLFHKMVEAGCRPDNITVNS 502



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 170/335 (50%), Gaps = 14/335 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           PP   S+  +   L ++  +   L LF ++ +  G  P+   ++ +       G +    
Sbjct: 105 PPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAAS 164

Query: 73  VVL--GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPDVFTYTTLI 129
            +L  G  L  C  P A  +  L+  L A  R  +A ALF      G   PDV+++  +I
Sbjct: 165 TLLTKGSRLGCCIEPYAYNY--LLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVI 222

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G+CR G+   AL L E M     EFG  C PD IT++ + DGLC+   V+K  E+  ++
Sbjct: 223 KGVCRMGNFQKALELVERMT----EFG--CSPDTITHNILVDGLCRAKQVNKGHEVLRRL 276

Query: 190 KDENI-NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           + + +  P+ VTYTS+I G+C A    +A  ++ +M++ G +PN VT+NV++N   K   
Sbjct: 277 QRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALD 336

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           M+ A R+   +I     PD   +++L+DG+C  G+++ AK ++  M  +    +V+++ I
Sbjct: 337 MESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSI 396

Query: 309 LINGYCKNKEIEGALSLYSEM-LSKGIRPTVVTYN 342
           +I+  CK      AL +  E+ +   I P    YN
Sbjct: 397 IIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYN 431



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 66/308 (21%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN++   + +  ++   L L +R+   G  PD  T+NIL++  C+  +V+ G  V
Sbjct: 213 PDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEV 272

Query: 75  LGRILRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG---------------- 117
           L R+ R     P+AVT+TS+I G C   ++ +A +++  +   G                
Sbjct: 273 LRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYG 332

Query: 118 -------------------CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV- 157
                              C PDV T+++LI+G CR G    A  +++EM   + +  V 
Sbjct: 333 KALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVY 392

Query: 158 --------VCK---------------------PDAITYSTITDGLCKEGFVDKAKELFLK 188
                   +CK                     P    Y+ + D LCK G VD+A  +   
Sbjct: 393 TFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTD 452

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           MK++  +PD  TYT LI G C      EA  LF +M++ G +P+ +T N  ++ + K G 
Sbjct: 453 MKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGM 512

Query: 249 MDEASRLL 256
            +E  +++
Sbjct: 513 PNEVDQIM 520



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 32/252 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  +     K    +  +S++  +   G  P+  TYN+LIN + K   +     +
Sbjct: 284 PNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRM 343

Query: 75  LGR-ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
             + ILR C  PD VTF+SLI G C   ++ +A  ++ ++     +P+V+T++ +I+ LC
Sbjct: 344 YRQLILRHC-PPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLC 402

Query: 134 RTGHTIVALNLFEEMANG----------NGEFGVVCK--------------------PDA 163
           +   +  AL++  E+             N    ++CK                    PD 
Sbjct: 403 KQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDK 462

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
            TY+ +  G C +G + +A  LF KM +    PD +T  S +     A   NE   + + 
Sbjct: 463 YTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQIMLI 522

Query: 224 MMDQGVQPNVVT 235
               G+    V+
Sbjct: 523 ASGHGLASQKVS 534



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 87/223 (39%), Gaps = 73/223 (32%)

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNV------------------ 233
           ++ P   +Y  +I   C +    +A  LF +MMDQ G  P                    
Sbjct: 103 SVPPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDA 162

Query: 234 -----------------VTFNVIMNELCKNGKMDEASRLLELMIQIGV-RPDASVYNT-- 273
                              +N ++N L  +G+  +A  L E  IQ G+  PD   +N   
Sbjct: 163 ASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVI 222

Query: 274 ---------------------------------LMDGFCLTGRVNRAKELFVSMESNG-C 299
                                            L+DG C   +VN+  E+   ++ +G C
Sbjct: 223 KGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVC 282

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M +  +Y  +I+GYCK  ++E A+S+Y++ML  G RP  VTYN
Sbjct: 283 MPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYN 325


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 174/328 (53%), Gaps = 8/328 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLN-SIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V S+NI+   L      D    L++ L     L PD+ T++ +I+  C+ G  +    +L
Sbjct: 369 VTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQIL 428

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
                S    D  +++S+I GLC + R+ +A  L+ K+     KP+   Y  LING C+ 
Sbjct: 429 EEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQA 488

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A+ ++ +MA  +      C P  ITY+T+  GLCK     +A     +M ++   
Sbjct: 489 SKFSDAIRVYSQMAEND------CSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCM 542

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
            DV TY SLIRG C     + A  L+ +++D+G+Q +VV  N++++ LC  GK+DEAS+L
Sbjct: 543 LDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQL 602

Query: 256 L-ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E+  +    P+   YNTLMDGF  TG  ++A  L++++  NG + D+ SY   I G C
Sbjct: 603 LSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLC 662

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                   + L +EML+ GI PT +T+N
Sbjct: 663 SCNRTPEGVQLLNEMLASGIIPTAITWN 690



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 184/370 (49%), Gaps = 31/370 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINC 61
           + D M      P  VC +N L G   +N  ++  + ++++L    G  P+L TYN++++ 
Sbjct: 216 LLDEMPSYEVQPDAVC-YNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDG 274

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK+G       V  R++ +   PD +T+ ++I GLC  + +  AA +++++   G  PD
Sbjct: 275 LCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPD 334

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMA--------------NGNGEFGVVCK------- 160
           V  Y +L+ G C  G    A   ++ M+               G  + G+V K       
Sbjct: 335 VVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWEL 394

Query: 161 --------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                   PD +T+ST+  GLC++GF +K+ ++  + +      D  +Y+S+I G C   
Sbjct: 395 LEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDG 454

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             ++A  L+ ++     +PN   +N ++N  C+  K  +A R+   M +    P    YN
Sbjct: 455 RLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYN 514

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           TL+ G C   +   A      M   GCM DV +YG LI G C++K+I+GAL+L++++L K
Sbjct: 515 TLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDK 574

Query: 333 GIRPTVVTYN 342
           G++  VV +N
Sbjct: 575 GLQTDVVMHN 584



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 180/377 (47%), Gaps = 42/377 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +++ ++R   + P + ++N++   L K   +     +++R+ +    PD+ TY  +I+  
Sbjct: 251 VWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGL 310

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK--- 119
           C+   V     V   ++++   PD V + SL+KG C   R+ EA   +  +   G +   
Sbjct: 311 CRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVT 370

Query: 120 --------------------------------PDVFTYTTLINGLCRTGHTIVALNLFEE 147
                                           PD+ T++T+I+GLC  G    +L + EE
Sbjct: 371 SYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEE 430

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
                 E       D  +YS++  GLCK+G +D A +L+ K+  ++  P+   Y +LI G
Sbjct: 431 ARTSGKEL------DEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALING 484

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           FC A+ +++A  ++ +M +    P  +T+N +++ LCK  K  EASR    M++ G   D
Sbjct: 485 FCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLD 544

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
            + Y +L+ G C   +++ A  L+  +   G   DV  + ILI+G C   +++ A  L S
Sbjct: 545 VNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLS 604

Query: 328 EMLSK-GIRPTVVTYNT 343
           EM  K    P VVTYNT
Sbjct: 605 EMKEKNNCCPNVVTYNT 621



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 167/369 (45%), Gaps = 46/369 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-----PDLYTYNILINCFCKMGRVS 69
           P V S N L     + + +    + F  L S G F     P+L TYNI++   C  G + 
Sbjct: 118 PGVRSHNALLDAFVRARRFSDADAFFASL-SHGAFGRRIAPNLQTYNIMLRSLCVRGDLD 176

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +   +      PD +T+++L+ G    +R+  A  L  ++ ++  +PD   Y  L+
Sbjct: 177 RAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALL 236

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G  R G    A+ ++E++    G       P+  TY+ + DGLCK G   +A +++ +M
Sbjct: 237 GGCFRNGEFEKAMRVWEQLVRDPG-----ASPNLATYNVMLDGLCKLGMFKEAGDVWERM 291

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
              N  PD++TY ++I G C + D + A  ++ EM+  G+ P+VV +N ++   C  G++
Sbjct: 292 VANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRV 351

Query: 250 DEASRLLELMIQIGVR-----------------------------------PDASVYNTL 274
            EA +  + M   G+R                                   PD   ++T+
Sbjct: 352 GEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTM 411

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + G C  G  N++ ++     ++G   D FSY  +I+G CK+  ++ A+ LY ++     
Sbjct: 412 IHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSF 471

Query: 335 RPTVVTYNT 343
           +P    YN 
Sbjct: 472 KPNSHIYNA 480



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 149/307 (48%), Gaps = 7/307 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F+ +   L +    +  L + +   + G   D ++Y+ +I+  CK GR+     +
Sbjct: 403 PDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKL 462

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +I    F P++  + +LI G C  S+  +A  +++++    C P   TY TLI+GLC+
Sbjct: 463 YEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCK 522

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A     EM          C  D  TY ++  GLC++  +D A  L+ ++ D+ +
Sbjct: 523 AEKYLEASRFTREMLEKG------CMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGL 576

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKNGKMDEAS 253
             DVV +  LI G C A   +EA  L  EM ++    PNVVT+N +M+   + G  D+A+
Sbjct: 577 QTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAA 636

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   +++ G+ PD   YNT + G C   R     +L   M ++G +    ++ IL+   
Sbjct: 637 SLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAV 696

Query: 314 CKNKEIE 320
            K   I+
Sbjct: 697 IKYGPIQ 703



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 155/294 (52%), Gaps = 10/294 (3%)

Query: 57  ILINCFCKMGRVSPGFV--VLGRILRSCFTPDAVTFTSLIKGLCAESR-IMEAAAL--FT 111
           +L +   ++   SP  +  +LG + R    P      +L+  L A SR +M  AAL  F 
Sbjct: 50  LLFHLLRRLATSSPSRLPRLLGILPRLRHRPRFSESAALVV-LSAFSRALMPDAALAAFR 108

Query: 112 KLRAF-GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
           +L +F GC P V ++  L++   R      A   F  +++G   FG    P+  TY+ + 
Sbjct: 109 RLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLSHG--AFGRRIAPNLQTYNIML 166

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
             LC  G +D+A  LF  ++   + PD +TY++L+ GF   N  + A  L  EM    VQ
Sbjct: 167 RSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQ 226

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQ-IGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           P+ V +N ++    +NG+ ++A R+ E +++  G  P+ + YN ++DG C  G    A +
Sbjct: 227 PDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGD 286

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  M +N    D+ +YG +I+G C++ +++ A  +YSEM+  G+ P VV YN+
Sbjct: 287 VWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNS 340


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 172/334 (51%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 151 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A  L  EM  +G++P+ +T+  +++  CK 
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L  G C  GR   A+++   M S G   D  +Y
Sbjct: 325 GDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK  ++     L  EM   G  P+VVT
Sbjct: 385 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 418



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 99/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 147 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 206

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 207 YTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 266

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 316



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 74/123 (60%)

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           + E+++ G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+  
Sbjct: 124 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 183

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G ++    L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT
Sbjct: 184 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 243

Query: 341 YNT 343
           + T
Sbjct: 244 FTT 246


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 167/327 (51%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL             + L   + S G  PD+ TYN+L+N  CK GR+      
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ +T   +++ +C+  R M+A  L T++   GC P V T+  LIN LCR
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+++ E+M          C P++++Y+ +  G CKE  +D+A +    M     
Sbjct: 134 KGLLGRAIDILEKMPTHG------CTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGC 187

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY +++   C     + A  L  ++  +G  P ++T+N +++ L K GK D+A  
Sbjct: 188 YPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVE 247

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M   G++PD   Y++L+ G    G+V  A + F  +E  G   + F+Y  ++ G C
Sbjct: 248 LLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLC 307

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K ++ + A+   + M+SKG +PT V+Y
Sbjct: 308 KAQQTDRAIDFLAYMISKGCKPTEVSY 334



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 163/320 (50%), Gaps = 6/320 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   + K    D  +     + S G  P++ T+NI++   C  GR      +
Sbjct: 49  PDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKL 108

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++R   +P  VTF  LI  LC +  +  A  +  K+   GC P+  +Y  L++G C+
Sbjct: 109 LTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCK 168

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+   E M +        C PD +TY+T+   LCK+G VD A EL  ++  +  
Sbjct: 169 EKKMDRAIQYLEIMVSRG------CYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGC 222

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P ++TY ++I G       ++A  L  EM  +G++P+V+T++ ++  L + GK++EA +
Sbjct: 223 SPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIK 282

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               +   GV+P+A  YN++M G C   + +RA +    M S GC     SY ILI G  
Sbjct: 283 FFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIA 342

Query: 315 KNKEIEGALSLYSEMLSKGI 334
                + AL L +E+ S+G+
Sbjct: 343 NEGLAKEALELLNELCSRGV 362



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 149/295 (50%), Gaps = 6/295 (2%)

Query: 49  FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108
           +PD+ TY ILI   C    V     +L  +      PD VT+  L+ G+C E R+ EA  
Sbjct: 13  YPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIK 72

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
               + ++G +P+V T+  ++  +C TG  + A  L  EM          C P  +T++ 
Sbjct: 73  FLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG------CSPSVVTFNI 126

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           + + LC++G + +A ++  KM      P+ ++Y  L+ GFC     + A      M+ +G
Sbjct: 127 LINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRG 186

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
             P++VT+N ++  LCK+GK+D A  LL  +   G  P    YNT++DG    G+ ++A 
Sbjct: 187 CYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAV 246

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           EL   M   G   DV +Y  LI G  +  ++E A+  + ++   G++P   TYN+
Sbjct: 247 ELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNS 301



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 145/270 (53%), Gaps = 6/270 (2%)

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL R L     PD +T+T LI+  CAES + +A  L  ++ + GCKPDV TY  L+NG+C
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+     M +    +G   +P+ IT++ I   +C  G    A++L  +M  + 
Sbjct: 63  KEGRLDEAIKFLNSMPS----YG--SQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG 116

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            +P VVT+  LI   C       A  +  +M   G  PN +++N +++  CK  KMD A 
Sbjct: 117 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAI 176

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           + LE+M+  G  PD   YNT++   C  G+V+ A EL   + S GC   + +Y  +I+G 
Sbjct: 177 QYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 236

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K  + + A+ L  EM  KG++P V+TY++
Sbjct: 237 SKVGKTDQAVELLHEMRGKGLKPDVITYSS 266



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 146/298 (48%), Gaps = 6/298 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V + NI+   +     +     L   +   G  P + T+NILIN  C+ G +    
Sbjct: 82  SQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAI 141

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +L ++     TP+++++  L+ G C E ++  A      + + GC PD+ TY T++  L
Sbjct: 142 DILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTAL 201

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A+ L  ++++        C P  ITY+T+ DGL K G  D+A EL  +M+ +
Sbjct: 202 CKDGKVDAAVELLNQLSSKG------CSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGK 255

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PDV+TY+SLI G        EA   F ++   GV+PN  T+N IM  LCK  + D A
Sbjct: 256 GLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRA 315

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
              L  MI  G +P    Y  L++G    G    A EL   + S G ++   +  +++
Sbjct: 316 IDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVVV 373



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 107/219 (48%), Gaps = 6/219 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   S+N L     K K  D  +   + + S G +PD+ TYN ++   CK G+V  
Sbjct: 150 HGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDA 209

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L ++     +P  +T+ ++I GL    +  +A  L  ++R  G KPDV TY++LI 
Sbjct: 210 AVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIA 269

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GL R G    A+  F ++      FGV  KP+A TY++I  GLCK    D+A +    M 
Sbjct: 270 GLSREGKVEEAIKFFHDVEG----FGV--KPNAFTYNSIMFGLCKAQQTDRAIDFLAYMI 323

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +   P  V+YT LI G        EA  L  E+  +GV
Sbjct: 324 SKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGV 362



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 35/195 (17%)

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           E+  +  ++   PDV+TYT LI   C  +   +A  L  EM  +G +P+VVT+NV++N +
Sbjct: 2   EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G++DEA + L  M   G +P+   +N ++   C TGR   A++L   M   GC   V
Sbjct: 62  CKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSV 121

Query: 304 FSYGILIN-----------------------------------GYCKNKEIEGALSLYSE 328
            ++ ILIN                                   G+CK K+++ A+     
Sbjct: 122 VTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEI 181

Query: 329 MLSKGIRPTVVTYNT 343
           M+S+G  P +VTYNT
Sbjct: 182 MVSRGCYPDIVTYNT 196


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 173/329 (52%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    F+ LF  L +   ++  L  F ++    +FP   + N L++ F ++G+       
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++ +   P   T+  +I  +C E  I  A+ LF +++  G  PD  TY ++I+G  +
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G     +  FEEM +      + C+PD ITY+T+ +  CK G + K  E F +MK   +
Sbjct: 181 VGRLDDTVYFFEEMKS------MSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGL 234

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV+Y++L+  FC  +   +A   +++M   G+ PN  T+  +++  CK G + +A R
Sbjct: 235 KPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFR 294

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M Q+GV  +   Y  L+DG C   R+  A+ELF  M + G + ++ SY  LI+G+ 
Sbjct: 295 LADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFV 354

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K K ++ AL L  EM  +GI+P ++ Y T
Sbjct: 355 KAKNMDRALELLDEMKGRGIKPDLLLYGT 383



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 163/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S N L    A+    D +   FK +   G  P ++TYNI+I+C CK G +     +
Sbjct: 96  PKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGL 155

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD VT+ S+I G     R+ +    F ++++  C+PDV TY TLIN  C+
Sbjct: 156 FEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCK 215

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G     L  F EM           KP+ ++YST+ D  CKE  + +A + ++ M+   +
Sbjct: 216 FGKLPKGLEFFREMKQSG------LKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGL 269

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TYTSL+  +C   + ++A  L  EM   GV+ NVVT+  +++ LC   ++ EA  
Sbjct: 270 VPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEE 329

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+  GV P+ + Y  L+ GF     ++RA EL   M+  G   D+  YG  I   C
Sbjct: 330 LFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLC 389

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++IE A  + +EM  KGI+     Y T
Sbjct: 390 GLEKIEAAKVVMNEMQEKGIKANTFIYTT 418



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 153/305 (50%), Gaps = 6/305 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V ++NI+  C+ K    +    LF+ +   GL PD  TYN +I+ + K+GR+    
Sbjct: 129 SKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTV 188

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
                +      PD +T+ +LI   C   ++ +    F +++  G KP+V +Y+TL++  
Sbjct: 189 YFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAF 248

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+      AL  + +M       G+V  P+  TY+++ D  CK G +  A  L  +M   
Sbjct: 249 CKEDMMQQALKFYVDMR----RLGLV--PNEHTYTSLVDAYCKIGNLSDAFRLADEMSQV 302

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            +  +VVTYT+LI G C      EA+ LF +M+  GV PN+ ++  +++   K   MD A
Sbjct: 303 GVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRA 362

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             LL+ M   G++PD  +Y T +   C   ++  AK +   M+  G   + F Y  L++ 
Sbjct: 363 LELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDA 422

Query: 313 YCKNK 317
           Y K++
Sbjct: 423 YFKSE 427



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 171/392 (43%), Gaps = 77/392 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K    D  +  F+ + S+   PD+ TYN LINCFCK G++  G   
Sbjct: 166 PDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEF 225

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +S   P+ V++++L+   C E  + +A   +  +R  G  P+  TYT+L++  C+
Sbjct: 226 FREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCK 285

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L +EM+    E+ VV      TY+ + DGLC    + +A+ELF KM    +
Sbjct: 286 IGNLSDAFRLADEMSQVGVEWNVV------TYTALIDGLCDVERIKEAEELFGKMVTAGV 339

Query: 195 NPDVVTYTSLIRGFCYAND---------------------------WN--------EAKC 219
            P++ +YT+LI GF  A +                           W+         AK 
Sbjct: 340 IPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKV 399

Query: 220 LFIEMMDQGVQPN-----------------------------------VVTFNVIMNELC 244
           +  EM ++G++ N                                    VTF V+++ LC
Sbjct: 400 VMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLC 459

Query: 245 KNGKMDEASRLL-ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           KN  + +A      +    G++ +A++Y  ++DG C   +V  A  LF  M   G + D 
Sbjct: 460 KNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDR 519

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            +Y  LI+G  K   +  AL+L  +M   G+ 
Sbjct: 520 TAYTSLIDGKLKQGNVVQALALRDKMAEIGVE 551



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 97/186 (52%)

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           VC P    +  +   L +E   ++A + F KMK   + P   +   L+  F      +  
Sbjct: 58  VCVPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGM 117

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           K  F +M+  G +P V T+N++++ +CK G ++ AS L E M   G+ PD   YN+++DG
Sbjct: 118 KRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDG 177

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           +   GR++     F  M+S  C  DV +Y  LIN +CK  ++   L  + EM   G++P 
Sbjct: 178 YGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPN 237

Query: 338 VVTYNT 343
           VV+Y+T
Sbjct: 238 VVSYST 243



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 121/291 (41%), Gaps = 53/291 (18%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++  L   L   +       LF ++ + G+ P+L +Y  LI+ F K   +     +L 
Sbjct: 308 VVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLD 367

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL-------- 128
            +      PD + + + I  LC   +I  A  +  +++  G K + F YTTL        
Sbjct: 368 EMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSE 427

Query: 129 ---------------------------INGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
                                      I+GLC+      A++ F  ++N   +FG+  + 
Sbjct: 428 NPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISN---DFGL--QA 482

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           +A  Y+ + DGLCKE  V+ A  LF +M  + + PD   YTSLI G     +  +A  L 
Sbjct: 483 NAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALR 542

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            +M + GV+           +LC+N         ++L +++G R     YN
Sbjct: 543 DKMAEIGVESGAR-----FGDLCQN--------TIKLSLRMGARVGVQHYN 580


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 175/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K +++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 79  LTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 138

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 139 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYS 198

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G++  P+ +T++T+ DG CK G VD A E++
Sbjct: 199 VLINGLCKESKMDDANELFDEMLVK----GLI--PNGVTFTTLIDGHCKNGRVDLAMEIY 252

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 253 KRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKE 312

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A +  + MIQ  +R D   Y  L+ G C  G+   A+++   M S G   D+ +Y
Sbjct: 313 GDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTY 372

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 373 TMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYN 408



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L +   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 181 LKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 240

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ +++ M + +        PD ITY+T+  GLCK G + +A +L  +M  + 
Sbjct: 241 KNGRVDLAMEIYKRMLSQS------LLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKG 294

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 295 LKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAE 354

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +L   M+ NG    V +Y +L+NG
Sbjct: 355 KMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 100/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 135 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDV 194

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 195 YTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKR 254

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CKN +++ A  L  EM  KG++P   TY T
Sbjct: 255 MLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTT 304



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMAN--GNGEFGVV----------CKPDAITYSTI 169
           + +Y T+I+ LC       A +L + + +  G G   VV           + D   +S +
Sbjct: 1   LHSYCTMIHFLCTHQMLSEAKSLIQLVVSRKGKGSASVVFATILETKGTQRSDIYVFSGL 60

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E +   ++  +     T   ++        +      + E+++ G 
Sbjct: 61  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFYEEILECGY 120

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++    
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M +NG   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 181 LKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTT 234


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 166/316 (52%), Gaps = 6/316 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 100 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 159

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V++ +L+ G      + E   L + + A G +PDV+TY+ LING C+      A  LF+
Sbjct: 160 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFD 219

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM       G+V  P+ + ++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 220 EMLVK----GLV--PNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 273

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A  L  EM  +G++P+ +T+  +++  CK G +D A    + MIQ   R 
Sbjct: 274 GLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRL 333

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   D  +Y ++IN +CK  ++     L 
Sbjct: 334 DEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 393

Query: 327 SEMLSKGIRPTVVTYN 342
            EM   G  P+VVTYN
Sbjct: 394 KEMQRDGHVPSVVTYN 409



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 162/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 181

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI G C ES+  +A  LF ++   G  P+   +TTLI+G C
Sbjct: 182 LKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHC 241

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A  L  +M  + 
Sbjct: 242 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKG 295

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ +  + + V +  +++ LC  G+  +A 
Sbjct: 296 LKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAE 355

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PDA  Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 356 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 97/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 136 CKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 195

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N  CK  K D+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 196 YTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQ 255

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 256 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTT 305



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 72/123 (58%)

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           + E+++ G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+  
Sbjct: 113 YEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 172

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G ++    L  +M ++G   DV++Y +LING CK  + + A  L+ EML KG+ P  V 
Sbjct: 173 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVX 232

Query: 341 YNT 343
           + T
Sbjct: 233 FTT 235


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 166/316 (52%), Gaps = 6/316 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 176

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V++ +L+ G      + E   L + + A G +PDV+TY+ LING C+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFD 236

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM       G+V  P+ + ++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 237 EMLVK----GLV--PNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 290

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A  L  EM  +G++P+ +T+  +++  CK G +D A    + MIQ   R 
Sbjct: 291 GLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRL 350

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   D  +Y ++IN +CK  ++     L 
Sbjct: 351 DXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 410

Query: 327 SEMLSKGIRPTVVTYN 342
            EM   G  P+VVTYN
Sbjct: 411 KEMQRDGHVPSVVTYN 426



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 162/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI G C ES+  +A  LF ++   G  P+   +TTLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A  L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ +  + + V +  +++ LC  G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PDA  Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 97/171 (56%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+
Sbjct: 152 FCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V T++V++N  CK  K D+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++ 
Sbjct: 212 VYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYK 271

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 272 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTT 322



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 72/124 (58%)

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E+++ G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+ 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L  +M ++G   DV++Y +LING CK  + + A  L+ EML KG+ P  V
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXV 248

Query: 340 TYNT 343
            + T
Sbjct: 249 XFTT 252


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 172/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   +K +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ + ++T+ DG CK G VD A E++
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVK----GLV--PNGVIFTTLIDGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +   L  EM  +G++P+ +T+  +++  CK 
Sbjct: 271 KQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M + G   D  +Y
Sbjct: 331 GDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYN 426



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 166/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+   +TTLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +   L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A     +M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PDA  Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 373 KMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 100/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 153 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 212

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+  ++ TL+DG C  GRV+ A E++  
Sbjct: 213 YTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQ 272

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++    L  EM  KG++P  +TY T
Sbjct: 273 MLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTT 322



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 111/237 (46%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +
Sbjct: 16  RHTLHSYCTMIHFLCTHQMLWEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVF 75

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++        T   ++        +      + E+++
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILE 135

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++ 
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  V + T
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTT 252


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 179/338 (52%), Gaps = 11/338 (3%)

Query: 8   LRMHPSPPPVCSFNILFGC---LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           ++++   P V S+N L      L  N       ++ K +    + P+L T+NILI+ F K
Sbjct: 249 MKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWK 308

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
              +     V   +L     P+ +T+ SLI GLC   +I EA  +  K+ + G +P++ T
Sbjct: 309 DDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLIT 368

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y +LING C+ G    AL++F+ +       G   +P    Y+ + D  CK G +D    
Sbjct: 369 YHSLINGFCKNGMMKEALDMFDSVK------GQGTRPTTRMYNMLIDAYCKLGKIDDGFA 422

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L  +M+ E I PDV TY  LI G C   +   AK LF ++ ++G+ P++VTF+++M   C
Sbjct: 423 LKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYC 481

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR-DV 303
             G+  +A+ LL+ M ++G++P    YN +M G+C  G +  A  +   ME    +R +V
Sbjct: 482 SRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNV 541

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            SY +L+ GY +  ++E A  L +EML KG+ P  +TY
Sbjct: 542 ASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 176/324 (54%), Gaps = 11/324 (3%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           ++   L +N+  D V  L+K +    + P+++T+N++IN  CK G+++    V+  +   
Sbjct: 194 LMVALLKQNRSAD-VEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVY 252

Query: 82  CFTPDAVTFTSLIKGLC---AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            ++P+ V++ +LI G C      ++ +A A+  ++      P++ T+  LI+G  +  + 
Sbjct: 253 GYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNL 312

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             +L +F+EM + +        P+ ITY+++ +GLC  G +++A  +  KM    + P++
Sbjct: 313 PGSLKVFKEMLDQD------VIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNL 366

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           +TY SLI GFC      EA  +F  +  QG +P    +N++++  CK GK+D+   L E 
Sbjct: 367 ITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEE 426

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + G+ PD   YN L+ G C  G +  AK+LF  + + G + D+ ++ IL+ GYC   E
Sbjct: 427 MEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKG-LPDLVTFHILMEGYCSRGE 485

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
              A  L  EM   G++P  +TYN
Sbjct: 486 SRKAAMLLKEMSKMGLKPRHLTYN 509



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 165/325 (50%), Gaps = 10/325 (3%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           ++L    A N  ++     FKR    G      +   L+    K  R +    +   ++R
Sbjct: 157 DMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIR 216

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR---TGH 137
               P+  TF  +I  LC   ++ +A  +   ++ +G  P+V +Y TLI+G C+    G 
Sbjct: 217 RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGK 276

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A  + +EM            P+  T++ + DG  K+  +  + ++F +M D+++ P+
Sbjct: 277 MYKADAVLKEMVENE------VSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPN 330

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V+TY SLI G C     NEA  +  +M+  GVQPN++T++ ++N  CKNG M EA  + +
Sbjct: 331 VITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFD 390

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            +   G RP   +YN L+D +C  G+++    L   ME  G + DV +Y  LI G C+N 
Sbjct: 391 SVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNG 450

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYN 342
            IE A  L+ ++ +KG+ P +VT++
Sbjct: 451 NIEAAKKLFDQLTNKGL-PDLVTFH 474



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 170/332 (51%), Gaps = 11/332 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG---RVSPG 71
           P V +FN++   L K    +    + + +   G  P++ +YN LI+ +CK+G   ++   
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKA 280

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             VL  ++ +  +P+  TF  LI G   +  +  +  +F ++      P+V TY +LING
Sbjct: 281 DAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLING 340

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LC  G    A+ + ++M +     GV  +P+ ITY ++ +G CK G + +A ++F  +K 
Sbjct: 341 LCNGGKINEAIGMRDKMVSA----GV--QPNLITYHSLINGFCKNGMMKEALDMFDSVKG 394

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           +   P    Y  LI  +C     ++   L  EM  +G+ P+V T+N ++  LC+NG ++ 
Sbjct: 395 QGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEA 454

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A +L + +   G+ PD   ++ LM+G+C  G   +A  L   M   G      +Y I++ 
Sbjct: 455 AKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMK 513

Query: 312 GYCKNKEIEGALSLYSEM-LSKGIRPTVVTYN 342
           GYCK   ++ A ++ ++M   + +R  V +YN
Sbjct: 514 GYCKEGNLKAATNMRTQMEKERRLRMNVASYN 545



 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 162/325 (49%), Gaps = 24/325 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FNIL     K+ +    L +FK +    + P++ TYN LIN  C  G+++    +
Sbjct: 294 PNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGM 353

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ +   P+ +T+ SLI G C    + EA  +F  ++  G +P    Y  LI+  C+
Sbjct: 354 RDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCK 413

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L EEM       G+V  PD  TY+ +  GLC+ G ++ AK+LF ++ ++ +
Sbjct: 414 LGKIDDGFALKEEMERE----GIV--PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL 467

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VT+  L+ G+C   +  +A  L  EM   G++P  +T+N++M   CK G +  A+ 
Sbjct: 468 -PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATN 526

Query: 255 L-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +  ++  +  +R + + YN L+ G+   G++  A  L   M   G + +  +Y I+    
Sbjct: 527 MRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV---- 582

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTV 338
              KE         EM+ KG  P +
Sbjct: 583 ---KE---------EMVDKGFVPDI 595



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 3/187 (1%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           K  A++   +   L K+      + L+ +M    I P+V T+  +I   C     N+A+ 
Sbjct: 185 KLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARD 244

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCK---NGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           +  +M   G  PNVV++N +++  CK   NGKM +A  +L+ M++  V P+ + +N L+D
Sbjct: 245 VMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILID 304

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           GF     +  + ++F  M     + +V +Y  LING C   +I  A+ +  +M+S G++P
Sbjct: 305 GFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQP 364

Query: 337 TVVTYNT 343
            ++TY++
Sbjct: 365 NLITYHS 371


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/292 (34%), Positives = 163/292 (55%), Gaps = 8/292 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
           T +I++   C+ GRV+         L  +   PD V++T+LI GLC   R+  A  LF K
Sbjct: 12  TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 71

Query: 113 L-RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
           +  A GC+P+ FTY  L++GLC+      A  +  E    +        PD +TY+T+  
Sbjct: 72  MVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRD------FAPDVVTYNTLMA 125

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
            L + G VD+A   F +M +E   P +V++ ++I G C A    +A  +F EM+D+   P
Sbjct: 126 ALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHP 185

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N+VT++V+++ LCK+ ++DEA +LL+ M+  G RPD   Y  L+ GF   GR++ A  L 
Sbjct: 186 NLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLL 245

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M S GC+ DV +Y ++I+  CK   ++ A  ++ E+++    P VVTY+ 
Sbjct: 246 RRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSA 297



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 167/315 (53%), Gaps = 18/315 (5%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS--CFTPDAV 88
           +H+D  L L          PD+ +Y  LIN  CK+GRV   F +  +++ +  C  P+A 
Sbjct: 31  EHFDASLELAHAQ------PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGC-RPNAF 83

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           T+ +L+ GLC + R+  A A+  + R     PDV TY TL+  L + G    AL  F +M
Sbjct: 84  TYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQM 143

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                E G V  P  ++++ I  GLC+   +  A E+F +M D + +P++VTY+ +I G 
Sbjct: 144 T----EEGYV--PTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGL 197

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C ++  +EA+ L   M+ +G +P++V +  ++      G++D A  LL  M+  G  PD 
Sbjct: 198 CKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDV 257

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y  ++D  C  GRV+ A E+F  + +N C  +V +Y  LI GYC+   ++    +  E
Sbjct: 258 VTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMRE 317

Query: 329 MLSKGIRPTVVTYNT 343
           M     RP VVTYNT
Sbjct: 318 M---ACRPNVVTYNT 329



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 134/266 (50%), Gaps = 9/266 (3%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R     P V ++N L   L +    D  L+ F ++   G  P L ++N +I   C+  R+
Sbjct: 109 RKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRL 168

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
           +    V   ++   F P+ VT++ +I GLC   ++ EA  L  ++ + GC+PD+  YT L
Sbjct: 169 ADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPL 228

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           + G    G    AL L   M +        C PD +TY+ + D LCK G VD A E+F +
Sbjct: 229 VLGFSAAGRLDSALGLLRRMVSQG------CIPDVVTYTVVIDKLCKVGRVDDAHEIFRE 282

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           +     +P+VVTY++LI G+C A+  +E   +  EM     +PNVVT+N ++  L    +
Sbjct: 283 LVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDR 339

Query: 249 MDEASRLLELMIQIGVRPDASVYNTL 274
            +EA  +   M + G  PDA  Y  L
Sbjct: 340 NEEAYGMFREMSECGFVPDARTYRGL 365



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 143/306 (46%), Gaps = 9/306 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  M+      P   ++N L   L K    D   ++          PD+ TYN L+ 
Sbjct: 66  FDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMA 125

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              ++GRV        ++    + P  V+F ++I GLC   R+ +A  +F ++      P
Sbjct: 126 ALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHP 185

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY+ +I+GLC++     A  L + M +        C+PD + Y+ +  G    G +D
Sbjct: 186 NLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEG------CRPDLVAYTPLVLGFSAAGRLD 239

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  L  +M  +   PDVVTYT +I   C     ++A  +F E++     PNVVT++ ++
Sbjct: 240 SALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALI 299

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
              C+  ++DE  +   +M ++  RP+   YNT++ G  +  R   A  +F  M   G +
Sbjct: 300 GGYCRASRVDEGGK---VMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFV 356

Query: 301 RDVFSY 306
            D  +Y
Sbjct: 357 PDARTY 362



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + SFN +   L + +     L +F  +      P+L TY+++I+  CK  ++     +
Sbjct: 150 PTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQL 209

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R++     PD V +T L+ G  A  R+  A  L  ++ + GC PDV TYT +I+ LC+
Sbjct: 210 LDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 269

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F E+          C P+ +TYS +  G C+   VD+  ++   M++   
Sbjct: 270 VGRVDDAHEIFRELVANK------CSPNVVTYSALIGGYCRASRVDEGGKV---MREMAC 320

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            P+VVTY ++I G    +   EA  +F EM + G  P+  T+  +   L
Sbjct: 321 RPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 369



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 2/119 (1%)

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG-VRPDASVYNTLMDGFCLTGRVN 285
           +G+Q N  T ++I+  LC+ G++ +A    +  +++   +PD   Y TL++G C  GRV+
Sbjct: 4   EGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVD 63

Query: 286 RAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A +LF  M  + GC  + F+Y  L++G CK   ++ A ++ +E   +   P VVTYNT
Sbjct: 64  AAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNT 122



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ ++   L K    D    +F+ L +    P++ TY+ LI  +C+  RV  G   
Sbjct: 255 PDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEG--- 311

Query: 75  LGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
            G+++R     P+ VT+ ++I GL    R  EA  +F ++   G  PD  TY  L   L 
Sbjct: 312 -GKVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALR 370

Query: 134 RTGH 137
              H
Sbjct: 371 MIDH 374


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 173/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K +++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 79  LTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 138

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 139 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 198

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 199 VLINGLCKESKMDDANELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 252

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D N+A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 253 KQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKE 312

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  ++ G C  GR   A+++   M S G   D  +Y
Sbjct: 313 GDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTY 372

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+V TYN
Sbjct: 373 TMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYN 408



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 166/299 (55%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 181 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G +++A  L  +M  + 
Sbjct: 241 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKG 294

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D + A      M+ + ++ + V +  I++ LC+ G+  +A 
Sbjct: 295 LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAE 354

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +L   M+ NG +  V +Y +L+NG
Sbjct: 355 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 135 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 194

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 195 YTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 254

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  ++  A  L  EM  KG++P   TY T
Sbjct: 255 MLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTT 304



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +
Sbjct: 1   LHSYCTMIHFLCTHQMFSEAKSLIQXVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGL 60

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E +   ++  +     T   ++        +      + E+++ G 
Sbjct: 61  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGY 120

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++    
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 181 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 234


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 170/322 (52%), Gaps = 6/322 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FNI F   AK    D  + +F ++   GL PD  +Y  LI+  CK+GRV    V   +++
Sbjct: 33  FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 92

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
               TP+ V F+SL+ GLC+  +  +   LF ++   G  P++  + T++  LC+ G  +
Sbjct: 93  NEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVM 152

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
               L + +       GV  +PD I+Y+T+ DG C  G +D+A +L   M    + P+  
Sbjct: 153 EGQRLVDSIEC----MGV--RPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSF 206

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           +Y +L+ G+C A   + A  LF +M+  G+ P VVT+N I++ L +  +  EA  L   M
Sbjct: 207 SYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNM 266

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           I  G +     YNT+++G C +  V+ A ++F S+ S G   ++ ++ I+I    K    
Sbjct: 267 INSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRK 326

Query: 320 EGALSLYSEMLSKGIRPTVVTY 341
           E A+ L++ + + G+ P VVTY
Sbjct: 327 EDAMDLFAAIPANGLVPDVVTY 348



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 145/251 (57%), Gaps = 6/251 (2%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           ++ G   +  + E   L   + A G  P+   +    +   + G    A+++F +M    
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMR--- 57

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
            + G+   PDA++Y  + D LCK G VD A+  F +M +E + P++V ++SL+ G C  +
Sbjct: 58  -QHGL--SPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSID 114

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            W + + LF EM++ G+ PN+V FN I+  LCK G++ E  RL++ +  +GVRPD   YN
Sbjct: 115 KWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYN 174

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           TL+DG CL G ++ A +L   M S G   + FSY  L++GYCK   I+ A SL+ +MLS 
Sbjct: 175 TLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSN 234

Query: 333 GIRPTVVTYNT 343
           GI P VVTYNT
Sbjct: 235 GITPGVVTYNT 245



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 161/295 (54%), Gaps = 6/295 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ P+ + +NI  + + K G +     +  ++ +   +PDAV++ +LI  LC   R+ +A
Sbjct: 25  GISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDA 84

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
              F ++   G  P++  +++L+ GLC          LF EM N      V   P+ + +
Sbjct: 85  EVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLN------VGIHPNIVFF 138

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +TI   LCKEG V + + L   ++   + PDV++Y +LI G C A   +EA  L   M+ 
Sbjct: 139 NTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVS 198

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G++PN  ++N +++  CK G++D A  L   M+  G+ P    YNT++ G   T R + 
Sbjct: 199 VGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSE 258

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           AKEL+++M ++G    +++Y  ++NG CK+  ++ A  ++  + SKG++  ++T+
Sbjct: 259 AKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITF 313



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 163/351 (46%), Gaps = 30/351 (8%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ M+    +P  V   ++++G  + +K ++ V  LF  + ++G+ P++  +N ++   C
Sbjct: 88  FNQMINEGVTPNIVVFSSLVYGLCSIDK-WEKVEELFFEMLNVGIHPNIVFFNTILCNLC 146

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K GRV  G  ++  I      PD +++ +LI G C    I EA+ L   + + G KP+ F
Sbjct: 147 KEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSF 206

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC------------------------ 159
           +Y TL++G C+ G    A +LF +M +     GVV                         
Sbjct: 207 SYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNM 266

Query: 160 -----KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
                K    TY+TI +GLCK   VD+A ++F  +  + +  +++T+T +I         
Sbjct: 267 INSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRK 326

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            +A  LF  +   G+ P+VVT+ V+   L + G ++E   L   M + G  P++ + N L
Sbjct: 327 EDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNAL 386

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           +      G ++RA      ++      +  +  +LI+ +  ++    A SL
Sbjct: 387 VRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSL 437


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 183/392 (46%), Gaps = 68/392 (17%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           PP+   N L   LA+++ +  + SL  R+ +     +L TY  LIN +C  G +      
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPA----RNLRTYTTLINAYCLAGDIPAAKQH 94

Query: 75  LGRILRSCFTPD-----------------------------------AVTFTSLIKGLCA 99
           L  +L +   PD                                   A T+T+L+ GL  
Sbjct: 95  LTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLG 154

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL--------NLFE----- 146
              + EA  +F  +RA  C PD   Y T+++GLC  G T  A         N FE     
Sbjct: 155 AGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVV 214

Query: 147 ------------EMANG----NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
                       EM +      G  G  C P+  TY+ +  GLCK G V++A  LF +M 
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV 274

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           +  + P+VVTYT+LI+G C       A  L   M   G+ PN  TF+V+++ LCK  K++
Sbjct: 275 EAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVE 334

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA   L  +++ GV+ +  VY +L+DG C TG+++ A EL   M S G + D  SY  LI
Sbjct: 335 EAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +G C+ K++  A  +  +M+ KGI+ + VTY 
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASPVTYT 426



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 162/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L          +  L +F+ ++     P++ TY  LI+  CK G+V    V+
Sbjct: 210 PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVL 269

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++ +   P+ VT+T+LI+G C E  +  A  L   +   G  P+ +T++ LI+ LC+
Sbjct: 270 FSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK 329

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               +    LF       G      K + + Y+++ DGLCK G +D A EL  KM  E  
Sbjct: 330 R-EKVEEAQLFLGSLVKKG-----VKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGF 383

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  +Y+SLI G C     ++A  +  +MM++G+Q + VT+ +I++EL +    +   +
Sbjct: 384 VPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKK 443

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + MI  G+ PD   Y   +  +C  GR+  A+ + V M   G   ++ +Y  LI GY 
Sbjct: 444 IFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYA 503

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               +  A S +  M+ KG +P   +Y 
Sbjct: 504 NLGLVSQAFSTFEVMVGKGWKPNEDSYT 531



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 6/312 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K+   +  + LF R+   GL P++ TY  LI   C  G +   F +
Sbjct: 245 PNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRL 304

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P+  TF+ LI  LC   ++ EA      L   G K +   YT+LI+GLC+
Sbjct: 305 LHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCK 364

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    A  L ++M +     G V  PDA +YS++ DGLC++  + +A  +   M ++ I
Sbjct: 365 TGKIDAADELMQKMISE----GFV--PDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               VTYT +I            K +F +M+  G+ P++VT+ V +   C+ G+M++A  
Sbjct: 419 QASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAES 478

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           ++  M+  GV P+   YNTL+ G+   G V++A   F  M   G   +  SY +L+    
Sbjct: 479 MIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVV 538

Query: 315 KNKEIEGALSLY 326
           K    + ++ ++
Sbjct: 539 KKSSSDNSVDIW 550



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 148/329 (44%), Gaps = 53/329 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L        H      L   + + GL P+ +T+++LI+  CK  +V    + 
Sbjct: 280 PNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLF 339

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG +++     + V +TSLI GLC   +I  A  L  K+ + G  PD  +Y++LI+GLCR
Sbjct: 340 LGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCR 399

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  + E+M     E G+   P  +TY+ I D L +E   +  K++F KM    I
Sbjct: 400 QKKLSQATLMLEDMM----EKGIQASP--VTYTIIIDELVREVGSEGPKKIFDKMIATGI 453

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPD+VTYT  +R +C      +A+ + ++M+D+GV PN+VT+N ++      G + +A  
Sbjct: 454 NPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFS 513

Query: 255 LLELMIQIGVRPD----------------------------------------------- 267
             E+M+  G +P+                                               
Sbjct: 514 TFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLA 573

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           A +Y+  +   C   R+  AK  F+ M++
Sbjct: 574 ADIYSCFIRCLCRVDRLEEAKHFFMGMQN 602



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 95/193 (49%), Gaps = 6/193 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++ I+   L +    +    +F ++ + G+ PD+ TY + +  +C+ GR+     ++ ++
Sbjct: 424 TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQM 483

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P+ VT+ +LI+G      + +A + F  +   G KP+  +YT L+  + +   +
Sbjct: 484 VDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSS 543

Query: 139 IVALNLFE--EMANGNGEFGVVCKPD----AITYSTITDGLCKEGFVDKAKELFLKMKDE 192
             ++++++  +M +       + +      A  YS     LC+   +++AK  F+ M++ 
Sbjct: 544 DNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNA 603

Query: 193 NINPDVVTYTSLI 205
           N+ P    YTS+I
Sbjct: 604 NLTPSEDVYTSII 616


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 170/338 (50%), Gaps = 7/338 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +LR  PSP  V    ++ G  A+ +    +  + +     G+ PD YTY  +I+ +CK+G
Sbjct: 138 LLRQMPSPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVG 197

Query: 67  RVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           +V     V   +L      P+AV + +LI G C +  +  A     ++   G    V TY
Sbjct: 198 KVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATY 257

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
              ++ L   G    A  L EEM    GE G+   PDA TY+ + +G CKEG   KA ++
Sbjct: 258 NLFVHTLFMEGRAAEAHALVEEM----GEKGLA--PDAFTYNILINGYCKEGKEKKAMKM 311

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F  M  + I   VVTYTSLI          E   LF + + +G++P++  +N ++N  C 
Sbjct: 312 FEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCT 371

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G MD A  ++  M +  + PD   YNTLM G CL GR++ A+ L   M   G   D+ S
Sbjct: 372 GGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVS 431

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y  LI+GY    +I+ A+ +  EM+ KG  PT++TYN 
Sbjct: 432 YNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNA 469



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 164/345 (47%), Gaps = 13/345 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  + R+   P    +FNI+   L         L L +++ S    P+  TYN +I 
Sbjct: 101 FVLFADIFRLR-LPLSTTTFNIMLRHLCTAGKPVRALELLRQMPS----PNAVTYNTVIA 155

Query: 61  CFCKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-C 118
            FC  GRV  G  ++  +  R    PD  T+ ++I G C   ++ +A  +F ++   G  
Sbjct: 156 GFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKV 215

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           +P+   Y  LI G C  G+  VAL    EM +      V       TY+     L  EG 
Sbjct: 216 EPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVA------TYNLFVHTLFMEGR 269

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
             +A  L  +M ++ + PD  TY  LI G+C      +A  +F  M+ +G++  VVT+  
Sbjct: 270 AAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTS 329

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ L   G + E  RL    ++ G+RPD  +YN L++  C  G ++RA E+   ME   
Sbjct: 330 LIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKR 389

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              D  +Y  L+ G C    ++ A  L  EM  +GI+P +V+YNT
Sbjct: 390 ITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNT 434



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 166/365 (45%), Gaps = 42/365 (11%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL---------------------- 48
           H +  P     +L   +A   H  T LSL+ RL S+ L                      
Sbjct: 45  HLAATPSLPHLLLTASVAGRPH-TTSLSLYSRLKSLSLPIPTASLHPLLSSLPPAPAFVL 103

Query: 49  FPDLY---------TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F D++         T+NI++   C  G+          +LR   +P+AVT+ ++I G CA
Sbjct: 104 FADIFRLRLPLSTTTFNIMLRHLCTAGKPVRAL----ELLRQMPSPNAVTYNTVIAGFCA 159

Query: 100 ESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
             R+     +  ++R  G   PD +TY T+I+G C+ G    A  +F+EM    G+    
Sbjct: 160 RGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLT-EGK---- 214

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
            +P+A+ Y+ +  G C +G ++ A     +M D  ++  V TY   +          EA 
Sbjct: 215 VEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAH 274

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  EM ++G+ P+  T+N+++N  CK GK  +A ++ E+M+  G+R     Y +L+   
Sbjct: 275 ALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHAL 334

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
            + G V     LF      G   D+F Y  LIN +C   +++ A  +  EM  K I P  
Sbjct: 335 SMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDD 394

Query: 339 VTYNT 343
           VTYNT
Sbjct: 395 VTYNT 399



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 57/127 (44%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L      D    L + +   G+ PDL +YN LI+ +   G +     V
Sbjct: 392 PDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKV 451

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++   F P  +T+ ++IKGLC   +  +A  L  ++   G  PD  TY +LI GL  
Sbjct: 452 RDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTT 511

Query: 135 TGHTIVA 141
               + A
Sbjct: 512 EDERLAA 518


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 171/314 (54%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P++++++T+ DG CK+G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLM 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYVPSVVT 418



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 155/285 (54%), Gaps = 6/285 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  ++TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK G + +A++L  +M  + 
Sbjct: 253 KDGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/252 (35%), Positives = 137/252 (54%), Gaps = 6/252 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K    +    L   + + G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANEL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L +   P++V+FT+LI G C + R+  A  ++ ++ +    PD+ TY TLI GLC+
Sbjct: 229 FDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L  EM+          KPD ITY+T+ DG CKEG ++ A E   +M  ENI
Sbjct: 289 NGDLKQAQDLINEMSMKG------LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENI 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V YT+LI G C      +A+ +  EM+  G++P + T+ +I+NE CK G +   S+
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSK 402

Query: 255 LLELMIQIGVRP 266
           L++ M + G  P
Sbjct: 403 LMKEMQRDGYVP 414



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 6/252 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F  L+   C E  I  A ++F  +  +G +P V ++ TL+NG  + G     LN    + 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGD----LNEGFRLK 194

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           N     GV  +PD  TYS + +GLCKE  +D A ELF +M D  + P+ V++T+LI G C
Sbjct: 195 NAMQASGV--QPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHC 252

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                + A  ++ +M+ Q + P+++T+N ++  LCKNG + +A  L+  M   G++PD  
Sbjct: 253 KDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKI 312

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y TL+DG C  G +  A E    M       D  +Y  LI+G C+      A  +  EM
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 330 LSKGIRPTVVTY 341
           LS G++P + TY
Sbjct: 373 LSVGLKPEIGTY 384



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 104/178 (58%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +    CKEG +  A+ +F  +    + P VV++ +L+ G+    D NE   L   M 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  K+D+A+ L + M+  G+ P++  + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CKN +++ A  L +EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTT 316



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 91/184 (49%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+  CK G++  A  + + + + G+RP    +NTLM+G+ 
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +N    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  V
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSV 242

Query: 340 TYNT 343
           ++ T
Sbjct: 243 SFTT 246


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 179/341 (52%), Gaps = 6/341 (1%)

Query: 1    FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            + IFD   +     P + S+N L G L +  + +    LFK + ++G  PD +T+N+L+ 
Sbjct: 772  YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 61   CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
               K G+++  F +   ++     PDA+T+  +I  L   + + +A   F  L +   +P
Sbjct: 832  VHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRP 891

Query: 121  DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               TY  LI+GL + G    A+ LFEEM++    +G  CKP+   ++ + +G  K G  +
Sbjct: 892  TPRTYGPLIDGLAKVGRLEEAMRLFEEMSD----YG--CKPNCAIFNILINGYGKIGDTE 945

Query: 181  KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
             A +LF +M +E I PD+ +YT L+   C A   +EA   F E+   G+ P+ + +N I+
Sbjct: 946  TACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRII 1005

Query: 241  NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
            N L K+ +M+EA  L   M   G+ PD   YN+LM    L G V +AK ++  ++  G  
Sbjct: 1006 NGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLE 1065

Query: 301  RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             DVF+Y  LI GY  ++  E A ++Y  M+  G  P + TY
Sbjct: 1066 PDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 161/310 (51%), Gaps = 6/310 (1%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           DT    + ++ + G  PD+ T+ IL++  CK       F     + +    P+  T+ +L
Sbjct: 349 DTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTL 408

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I GL    RI +A  L   + + G +P  +TY   I+   ++G T  A+  FE+M     
Sbjct: 409 ICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAK-- 466

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
             G+V  P+ +  +     L + G + +AK +F  +++  + PD VTY  +++ +     
Sbjct: 467 --GIV--PNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQ 522

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            +EA  L  EM+  G +P+V+  N +++ L K G++DEA ++ + M  + + P    YNT
Sbjct: 523 VDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNT 582

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ G    GRV +A ELF SM    C  +  S+  L++ +CKN E+E AL ++S+M    
Sbjct: 583 LLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMD 642

Query: 334 IRPTVVTYNT 343
            +P V+TYNT
Sbjct: 643 CKPDVLTYNT 652



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 173/361 (47%), Gaps = 43/361 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+N L   L ++      L +++R+ S GL P L TY+ L+    K        V+L  +
Sbjct: 194 SYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+  TFT  I+ L    +I EA  +F ++   GC PD+ TYT LI+ LC  G  
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQL 313

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A  LF +M ANG+       KPD + Y T+ D     G +D  KE + +M+ +   PD
Sbjct: 314 ENAKELFVKMKANGH-------KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPD 366

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           VVT+T L+   C A D++EA   F  M  QG+ PN+ T+N ++  L + G++++A +LL 
Sbjct: 367 VVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLG 426

Query: 258 LMIQIGVRPDASVYNTLMDGFCLT-----------------------------------G 282
            M  +GV+P A  YN  +D F  +                                   G
Sbjct: 427 TMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMG 486

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           R+  AK +F  +  NG   D  +Y +++  Y K  +++ A++L SEM+  G  P V+  N
Sbjct: 487 RLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVN 546

Query: 343 T 343
           +
Sbjct: 547 S 547



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 143/287 (49%), Gaps = 7/287 (2%)

Query: 58   LINCFCKMGRVSPGFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
            L+   CK  R    + +  +  +    +P   ++  LI  L       +A  LF  ++  
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 117  GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
            GC PD FT+  L+    ++G       L++EM +        CKPDAITY+ +   L K 
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRR------CKPDAITYNIVISSLAKS 871

Query: 177  GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
              +DKA + F  +   +  P   TY  LI G        EA  LF EM D G +PN   F
Sbjct: 872  NNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIF 931

Query: 237  NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            N+++N   K G  + A +L + M+  G+RPD   Y  L+D  CL GRV+ A   F  ++S
Sbjct: 932  NILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKS 991

Query: 297  NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   D  +Y  +ING  K++ +E AL+LY+EM ++GI P + TYN+
Sbjct: 992  TGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNS 1038



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 156/321 (48%), Gaps = 6/321 (1%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82
           +F  L+       + ++  ++   G   + Y+YN LI+   + G       V  R++   
Sbjct: 163 IFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEG 222

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
             P   T+++L+  L  +        L  ++   G +P+V+T+T  I  L R G    A 
Sbjct: 223 LKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAY 282

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            +F  M +        C PD +TY+ + D LC  G ++ AKELF+KMK     PD V Y 
Sbjct: 283 EIFRRMDDEG------CGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYI 336

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           +L+  F    D +  K  + +M   G  P+VVTF ++++ LCK    DEA    ++M + 
Sbjct: 337 TLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQ 396

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G+ P+   YNTL+ G    GR+  A +L  +MES G     ++Y I I+ + K+ E   A
Sbjct: 397 GILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKA 456

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           +  + +M +KGI P +V  N 
Sbjct: 457 VETFEKMKAKGIVPNIVACNA 477



 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 147/297 (49%), Gaps = 6/297 (2%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P   +FN+L     K+     +  L+K + S    PD  TYNI+I+   K   +      
Sbjct: 821  PDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDF 880

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               ++ S F P   T+  LI GL    R+ EA  LF ++  +GCKP+   +  LING  +
Sbjct: 881  FYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGK 940

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G T  A  LF+ M N         +PD  +Y+ + D LC  G VD+A   F ++K   +
Sbjct: 941  IGDTETACQLFKRMVNEG------IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGL 994

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            +PD + Y  +I G   +    EA  L+ EM ++G+ P++ T+N +M  L   G +++A R
Sbjct: 995  DPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKR 1054

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
            + E +   G+ PD   YN L+ G+ L+     A  ++ +M  +GC  ++ +Y  L N
Sbjct: 1055 MYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 150/326 (46%), Gaps = 7/326 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F IL   L K + +D   + F  +   G+ P+L+TYN LI    + GR+     +
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG +      P A T+   I          +A   F K++A G  P++      +  L  
Sbjct: 425 LGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAE 484

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F    NG  E G+   PD++TY+ +     K G VD+A  L  +M     
Sbjct: 485 MGRLREAKTMF----NGLRENGLA--PDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGC 538

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+   SLI     A   +EA  +F  M D  + P VVT+N +++ L K G++ +A  
Sbjct: 539 EPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIE 598

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E MI+    P+   +NTL+D FC    V  A ++F  M    C  DV +Y  +I G  
Sbjct: 599 LFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLI 658

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           K  ++  A   + + L K + P  VT
Sbjct: 659 KENKVNHAFWFFHQ-LKKSMHPDHVT 683



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 168/372 (45%), Gaps = 44/372 (11%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR +   P   ++N++  C +K    D  ++L   +   G  PD+   N LI+   K GR
Sbjct: 498 LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGR 557

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V   + +  R+     +P  VT+ +L+ GL  E R+ +A  LF  +    C P+  ++ T
Sbjct: 558 VDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNT 617

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L++  C+     +AL +F +M   +      CKPD +TY+T+  GL KE  V+ A   F 
Sbjct: 618 LLDCFCKNDEVELALKMFSKMTVMD------CKPDVLTYNTVIYGLIKENKVNHAFWFFH 671

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-----------------VQ 230
           ++K ++++PD VT  +L+ G        +A  +  + M Q                  V+
Sbjct: 672 QLK-KSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVE 730

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELM--------------------IQIGVRPDASV 270
             +    +   EL  NG   E S L+ L+                     ++G+ P  + 
Sbjct: 731 AEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLAS 790

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           YN L+          +A +LF  M++ GC  D F++ +L+  + K+ +I     LY EM+
Sbjct: 791 YNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMI 850

Query: 331 SKGIRPTVVTYN 342
           S+  +P  +TYN
Sbjct: 851 SRRCKPDAITYN 862



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 147/303 (48%), Gaps = 10/303 (3%)

Query: 45  SIGLFPDLY----TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100
           SI  FP +     T N ++       +V     V   + +     D  T+ ++ K L   
Sbjct: 111 SISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIR 170

Query: 101 SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160
             + +   +  K+R  G   + ++Y  LI+ L ++G    AL ++  M +         K
Sbjct: 171 GGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEG------LK 224

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P   TYS +   L K+   +    L  +M+D  + P+V T+T  IR    A   +EA  +
Sbjct: 225 PSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEI 284

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           F  M D+G  P++VT+ V+++ LC  G+++ A  L   M   G +PD  +Y TL+D F  
Sbjct: 285 FRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFND 344

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G ++  KE +  ME++G M DV ++ IL++  CK ++ + A + +  M  +GI P + T
Sbjct: 345 FGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHT 404

Query: 341 YNT 343
           YNT
Sbjct: 405 YNT 407



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 9/232 (3%)

Query: 11   HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
             P+P    ++  L   LAK    +  + LF+ ++  G  P+   +NILIN + K+G    
Sbjct: 890  RPTPR---TYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTET 946

Query: 71   GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
               +  R++     PD  ++T L+  LC   R+ EA   F +L++ G  PD   Y  +IN
Sbjct: 947  ACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIIN 1006

Query: 131  GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
            GL ++     AL L+ EM N     G+V  PD  TY+++   L   G V++AK ++ +++
Sbjct: 1007 GLGKSQRMEEALALYNEMRNR----GIV--PDLYTYNSLMLNLGLAGMVEQAKRMYEELQ 1060

Query: 191  DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
               + PDV TY +LIRG+  + +   A  ++  MM  G  PN+ T+  + N+
Sbjct: 1061 LAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPNQ 1112


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 172/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 94  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 153

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G  PDV+TY+
Sbjct: 154 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYS 213

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G++  P+ +T++T+ DG CK G VD A E++
Sbjct: 214 VLINGLCKESKMDDANELFDEMLVK----GLI--PNGVTFTTLIDGHCKNGRVDFAMEIY 267

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 268 KRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKE 327

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 328 GDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 387

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 388 TMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYN 423



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 136 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFR 195

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 196 LKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 255

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ +++ M + +        PD ITY+T+  GLCK+G + +A +L  +M  + 
Sbjct: 256 KNGRVDFAMEIYKRMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 309

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 310 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAE 369

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +L   M+ NG    V +Y +L+NG
Sbjct: 370 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 97/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+      +E   L   M+  GV P+V
Sbjct: 150 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDV 209

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 210 YTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKR 269

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P   TY T
Sbjct: 270 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 319



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 114/237 (48%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +
Sbjct: 13  RHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVF 72

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++  +     T   ++        +      + E+++
Sbjct: 73  SGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 132

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++ 
Sbjct: 133 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDE 192

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G + DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 193 GFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTT 249


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+  +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A   F+EM       G+V  P+ +T++T+ DG CK G VD AKE++
Sbjct: 217 VLINGLCKESKMDDANEXFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAKEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  +M  +G++P+ +T+  ++B  CK 
Sbjct: 271 KQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D  VY  L+ G C  GR   A+++   M S     D  +Y
Sbjct: 331 GDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYN 426



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 161/299 (53%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + + N L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A   F ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A  ++++M + +        PD ITY+T+  GLCK+G + +A +L   M  + 
Sbjct: 259 KNGRVDLAKEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ + ++PD   Y  +++ FC  G V +  +L   M+ +G    V +Y +L+NG
Sbjct: 373 KMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 99/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+  +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 153 CKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDV 212

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+   + M+  G+ P+   + TL+DG C  GRV+ AKE++  
Sbjct: 213 YTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQ 272

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  +M  KG++P  +TY T
Sbjct: 273 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTT 322



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 109/234 (46%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +
Sbjct: 19  LHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASXVFAAILETKGTQRSDIYVFSGL 78

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E +   ++  +     T   ++        +      + E+++ G 
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGY 138

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK+G +  A  + + + + G+RP     NTLM+G+   G ++    
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFR 198

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L   M ++G   DV++Y +LING CK  +++ A   + EML KG+ P  VT+ T
Sbjct: 199 LKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTT 252


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 177/365 (48%), Gaps = 46/365 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN     L K         L  R+   G  P+ +TY +L++  C+MG+V    ++
Sbjct: 285 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 344

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLC 133
           L ++      P+ V F +LI G  +  R+ EA A +   + + GC PD+FTY TLI GLC
Sbjct: 345 LNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLC 400

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM---- 189
           + G+ + A  L  EM          C+P+ ITY+ + D  CKEG +++A+ +  +M    
Sbjct: 401 KKGYLVSARELMNEMQIKG------CEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 454

Query: 190 ----------------KDENIN---------------PDVVTYTSLIRGFCYANDWNEAK 218
                           KDE +                PD+ T+ SLI G C  N + EA 
Sbjct: 455 LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEAL 514

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L+ +M+ +GV  N +T+N +++   + G M EA +L+  M+  G   D   YN L+   
Sbjct: 515 GLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKAL 574

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G + +   LF  M S G   +  S  ILING C+   I+ AL    +M+ +G+ P +
Sbjct: 575 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDI 634

Query: 339 VTYNT 343
           VTYN+
Sbjct: 635 VTYNS 639



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 168/330 (50%), Gaps = 11/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F ++   L      D+  +L K +   G  P+   Y  LI+   K+GRV+    +
Sbjct: 215 PTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKL 274

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD  TF   I GLC   RI EAA L  ++   G  P+ FTY  L++GLCR
Sbjct: 275 LEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCR 334

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK-MKDEN 193
            G    A  L  ++ N          P+ + ++T+ +G    G +D+AK +  + M    
Sbjct: 335 MGKVDEARMLLNKVPN----------PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVG 384

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD+ TY +LI G C       A+ L  EM  +G +PNV+T+ ++++  CK G+++EA 
Sbjct: 385 CGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEAR 444

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L+ M   G+  +A  YN L+   C   +V  A  +F  M S GC  D+F++  LI G 
Sbjct: 445 NVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGL 504

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK  + E AL LY +ML +G+    +TYNT
Sbjct: 505 CKVNKFEEALGLYQDMLLEGVIANTITYNT 534



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K  +  +   L   +   G  P++ TY ILI+ FCK GR+     V
Sbjct: 387 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 446

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +       +AV +  LI  LC + ++ +A  +F  + + GCKPD+FT+ +LI GLC+
Sbjct: 447 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 506

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L+++M       GV+   + ITY+T+     + G + +A +L   M     
Sbjct: 507 VNKFEEALGLYQDMLLE----GVIA--NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGC 560

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY  LI+  C A +  +   LF +MM +G+ PN ++ N+++N LC+ G +  A  
Sbjct: 561 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 620

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  MI  G+ PD   YN+L++G C TGR   A  LF  ++  G   D  +Y  LI+ +C
Sbjct: 621 FLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHC 680

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K    + A  L S  +  G  P  VT+
Sbjct: 681 KEGMFDDAHLLLSRGVDSGFIPNEVTW 707



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 4/185 (2%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C+P   +Y+ + D L           +F +M  + I+P V T+  +++  C  N+ + A 
Sbjct: 178 CEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSAC 237

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M   G  PN + +  +++ L K G+++E  +LLE M+ +G  PD + +N  + G 
Sbjct: 238 ALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGL 297

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   R++ A +L   M   G   + F+YG+L++G C+  +++ A  L    L+K   P V
Sbjct: 298 CKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML----LNKVPNPNV 353

Query: 339 VTYNT 343
           V +NT
Sbjct: 354 VLFNT 358



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 1/144 (0%)

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  LI     A ++     L ++M  +G+      F +IM    + G   +A+RLL  M 
Sbjct: 114 YYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMR 173

Query: 261 QI-GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            +    P    YN ++D             +F  M S G    V+++G+++   C   E+
Sbjct: 174 GVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEV 233

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           + A +L  +M   G  P  + Y T
Sbjct: 234 DSACALLKDMTRHGCVPNAIVYQT 257


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   +K +   G    LY +NIL++ FCK G
Sbjct: 93  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDG 152

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 153 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 212

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 213 VLINGLCKESKMDDANELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 266

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  EM  +G++P+ +T+  +++  CK 
Sbjct: 267 KRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKE 326

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +  D   Y  L+ G C  GR   A+++   M S G   +  +Y
Sbjct: 327 GDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTY 386

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 387 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYN 422



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 164/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 135 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 194

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 195 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 254

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ +++ M + +        PD ITY+T+  GLCK+G + +A  L  +M  + 
Sbjct: 255 KNGRVDLAMEIYKRMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKG 308

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D + A      M+ + +  + V +  +++ LC+ G+  +A 
Sbjct: 309 LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAE 368

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++P+   Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 369 KMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 100/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 149 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 208

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 209 YTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKR 268

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 269 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTT 318



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 69/116 (59%)

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++  
Sbjct: 133 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 192

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 193 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTT 248


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 172/330 (52%), Gaps = 10/330 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   + N +   LA+++    V  LF++L +    P+++T+NI+I+  CK G ++    
Sbjct: 154 PPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKEGELAEARS 209

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  R+      PD VTF SLI G      + E   L  ++R  GCK DV TY  LIN  C
Sbjct: 210 LFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFC 269

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A   F  M       GV+   + +T+ST  D  CKEG V +A +LF +M+   
Sbjct: 270 KFGRMETAYGYFAAMKRE----GVMA--NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRG 323

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  +  TYT LI G C A   ++A  L  EM+ QGV  NVVT+ V+++ LCK  K+ EA 
Sbjct: 324 MALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAE 383

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L +M + GVR +  +Y TL+ G  +     +A  L   M++ G   D+  YG LI G 
Sbjct: 384 DVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL 443

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C   +++ A SL ++M   G+ P  + Y T
Sbjct: 444 CNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 172/385 (44%), Gaps = 63/385 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L     K    D V  L + +   G   D+ TYN LINCFCK GR+   +  
Sbjct: 221 PDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGY 280

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R     + VTF++ +   C E  + EA  LF ++R  G   + FTYT LI+G C+
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE---------- 184
            G    A+ L +EM        VV      TY+ + DGLCKE  V +A++          
Sbjct: 341 AGRLDDAIVLLDEMVRQGVPLNVV------TYTVLVDGLCKERKVAEAEDVLRMMEKAGV 394

Query: 185 -------------------------LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                                    L  +MK++ +  D+  Y +LI+G C  +  +EAK 
Sbjct: 395 RANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKS 454

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP------------- 266
           L  +M + G++PN + +  +M+   K+GK+ EA  +L+ ++  G +P             
Sbjct: 455 LLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFN 514

Query: 267 ---------DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
                    D  VY  L+DG+   G ++ A  L   M  +G   D+F Y   I+G+C   
Sbjct: 515 EMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLN 574

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYN 342
            +  A  ++SEM+  GI P    YN
Sbjct: 575 MMPEAREVFSEMIGHGIAPDRAVYN 599



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 154/322 (47%), Gaps = 6/322 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FNI+   L K        SLF R+  +G  PD+ T+N LI+ + K G +     +
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + RS    D VT+ +LI   C   R+  A   F  ++  G   +V T++T ++  C+
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ LF +M             +  TY+ + DG CK G +D A  L  +M  + +
Sbjct: 306 EGLVREAMKLFAQMRVRGMAL------NEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGV 359

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +VVTYT L+ G C      EA+ +   M   GV+ N + +  +++    N   ++A  
Sbjct: 360 PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALG 419

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M   G+  D S+Y  L+ G C   +++ AK L   M+ +G   +   Y  +++   
Sbjct: 420 LLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACF 479

Query: 315 KNKEIEGALSLYSEMLSKGIRP 336
           K+ ++  A+++  ++L  G +P
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQP 501



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 127/255 (49%), Gaps = 10/255 (3%)

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
           A    +L+  L     + +A     ++R     P+  T   ++  L R     +   LFE
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFE 181

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           ++            P+  T++ + D LCKEG + +A+ LF +MK+    PDVVT+ SLI 
Sbjct: 182 QLP----------APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLID 231

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G+    + +E + L  EM   G + +VVT+N ++N  CK G+M+ A      M + GV  
Sbjct: 232 GYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMA 291

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           +   ++T +D FC  G V  A +LF  M   G   + F+Y  LI+G CK   ++ A+ L 
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 327 SEMLSKGIRPTVVTY 341
            EM+ +G+   VVTY
Sbjct: 352 DEMVRQGVPLNVVTY 366



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 145/327 (44%), Gaps = 28/327 (8%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +F+       K       + LF ++   G+  + +TY  LI+  CK GR+    V+L 
Sbjct: 293 VVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLD 352

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++R     + VT+T L+ GLC E ++ EA  +   +   G + +   YTTLI+G     
Sbjct: 353 EMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNK 412

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           ++  AL L  EM N   E       D   Y  +  GLC    +D+AK L  KM +  + P
Sbjct: 413 NSEKALGLLSEMKNKGLEL------DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEP 466

Query: 197 DVVTYTSLI---------------------RGFCYAND-WNEAKCLFIEMMDQGVQPNVV 234
           + + YT+++                      GF   N   NEA  LF EM+ +G+  + V
Sbjct: 467 NYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKV 526

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
            +  +++   K G + +A  L   MI  G++ D   Y   + GFC    +  A+E+F  M
Sbjct: 527 VYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM 586

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEG 321
             +G   D   Y  LI    + +E+ G
Sbjct: 587 IGHGIAPDRAVYNCLITQIPEIRELGG 613


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 179/341 (52%), Gaps = 6/341 (1%)

Query: 1    FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            + IFD   +     P + S+N L G L +  + +    LFK + ++G  PD +T+N+L+ 
Sbjct: 772  YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 61   CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
               K G+++  F +   ++     PDA+T+  +I  L   + + +A   F  L +   +P
Sbjct: 832  VHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRP 891

Query: 121  DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               TY  LI+GL + G    A+ LFEEM+    ++G  CKP+   ++ + +G  K G  +
Sbjct: 892  TPRTYGPLIDGLAKVGRLEEAMRLFEEMS----DYG--CKPNCAIFNILINGYGKIGDTE 945

Query: 181  KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
             A +LF +M +E I PD+ +YT L+   C A   +EA   F E+   G+ P+ + +N I+
Sbjct: 946  TACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRII 1005

Query: 241  NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
            N L K+ +M+EA  L   M   G+ PD   YN+LM    L G V +AK ++  ++  G  
Sbjct: 1006 NGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLE 1065

Query: 301  RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             DVF+Y  LI GY  ++  E A ++Y  M+  G  P + TY
Sbjct: 1066 PDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 162/310 (52%), Gaps = 6/310 (1%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           DT    + ++ + G  PD+ T+ IL++  CK       F     + +    P+  T+ +L
Sbjct: 349 DTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTL 408

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I GL    RI +A  L   + + G +P  +TY T I+   ++G T  A+  FE+M     
Sbjct: 409 ICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAK-- 466

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
             G+V  P+ +  +     L + G + +AK +F  +++  + PD VTY  +++ +     
Sbjct: 467 --GIV--PNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQ 522

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            +EA  L  EM+  G +P+V+  N +++ L K G++DEA ++ + M  + + P    YNT
Sbjct: 523 VDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNT 582

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ G    GRV +A ELF SM    C  +  S+  L++ +CKN E+E AL ++S+M    
Sbjct: 583 LLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMD 642

Query: 334 IRPTVVTYNT 343
            +P V+TYNT
Sbjct: 643 CKPDVLTYNT 652



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 174/361 (48%), Gaps = 43/361 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+N L   L ++      L +++R+ S GL P L TY+ L+    K        V+L  +
Sbjct: 194 SYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+  TFT  I+ L    +I EA  +F ++   GC PD+ TYT LI+ LC  G  
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQL 313

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A  LF +M ANG+       KPD + Y T+ D     G +D  KE + +M+ +   PD
Sbjct: 314 ENAKELFVKMKANGH-------KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPD 366

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           VVT+T L+   C A D++EA   F  M  QG+ PN+ T+N ++  L + G++++A +LL+
Sbjct: 367 VVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLD 426

Query: 258 LMIQIGVRPDASVYNTLMDGFCLT-----------------------------------G 282
            M  +GV+P A  Y T +D F  +                                   G
Sbjct: 427 TMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMG 486

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           R+  AK +F  +  NG   D  +Y +++  Y K  +++ A++L SEM+  G  P V+  N
Sbjct: 487 RLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVN 546

Query: 343 T 343
           +
Sbjct: 547 S 547



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 143/287 (49%), Gaps = 7/287 (2%)

Query: 58   LINCFCKMGRVSPGFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
            L+   CK  R    + +  +  +    +P   ++  LI  L       +A  LF  ++  
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 117  GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
            GC PD FT+  L+    ++G       L++EM +        CKPDAITY+ +   L K 
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRR------CKPDAITYNIVISSLAKS 871

Query: 177  GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
              +DKA + F  +   +  P   TY  LI G        EA  LF EM D G +PN   F
Sbjct: 872  NNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIF 931

Query: 237  NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            N+++N   K G  + A +L + M+  G+RPD   Y  L+D  CL GRV+ A   F  ++S
Sbjct: 932  NILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKS 991

Query: 297  NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   D  +Y  +ING  K++ +E AL+LY+EM ++GI P + TYN+
Sbjct: 992  TGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNS 1038



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 155/321 (48%), Gaps = 6/321 (1%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82
           +F  L+       + ++  ++   G   + Y+YN LI+   + G       V  R++   
Sbjct: 163 IFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEG 222

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
             P   T+++L+  L  +        L  ++   G +P+V+T+T  I  L R G    A 
Sbjct: 223 LKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAY 282

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            +F  M +        C PD +TY+ + D LC  G ++ AKELF+KMK     PD V Y 
Sbjct: 283 EIFRRMDDEG------CGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYI 336

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           +L+  F    D +  K  + +M   G  P+VVTF ++++ LCK    DEA    ++M + 
Sbjct: 337 TLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQ 396

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G+ P+   YNTL+ G    GR+  A +L  +MES G     ++Y   I+ + K+ E   A
Sbjct: 397 GILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKA 456

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           +  + +M +KGI P +V  N 
Sbjct: 457 VETFEKMKAKGIVPNIVACNA 477



 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 147/297 (49%), Gaps = 6/297 (2%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P   +FN+L     K+     +  L+K + S    PD  TYNI+I+   K   +      
Sbjct: 821  PDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDF 880

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               ++ S F P   T+  LI GL    R+ EA  LF ++  +GCKP+   +  LING  +
Sbjct: 881  FYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGK 940

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G T  A  LF+ M N         +PD  +Y+ + D LC  G VD+A   F ++K   +
Sbjct: 941  IGDTETACQLFKRMVNEG------IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGL 994

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            +PD + Y  +I G   +    EA  L+ EM ++G+ P++ T+N +M  L   G +++A R
Sbjct: 995  DPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKR 1054

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
            + E +   G+ PD   YN L+ G+ L+     A  ++ +M  +GC  ++ +Y  L N
Sbjct: 1055 MYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 149/326 (45%), Gaps = 7/326 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F IL   L K + +D   + F  +   G+ P+L+TYN LI    + GR+     +
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P A T+ + I          +A   F K++A G  P++      +  L  
Sbjct: 425 LDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAE 484

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +F    NG  E G+   PD++TY+ +     K G VD+A  L  +M     
Sbjct: 485 MGRLREAKTMF----NGLRENGLA--PDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGC 538

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+   SLI     A   +EA  +F  M D  + P VVT+N +++ L K G++ +A  
Sbjct: 539 EPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIE 598

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E MI     P+   +NTL+D FC    V  A ++F  M    C  DV +Y  +I G  
Sbjct: 599 LFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLI 658

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVT 340
           K  ++  A   + + L K + P  VT
Sbjct: 659 KENKVNHAFWFFHQ-LKKSMHPDHVT 683



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 168/372 (45%), Gaps = 44/372 (11%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR +   P   ++N++  C +K    D  ++L   +   G  PD+   N LI+   K GR
Sbjct: 498 LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGR 557

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V   + +  R+     +P  VT+ +L+ GL  E R+ +A  LF  +    C P+  ++ T
Sbjct: 558 VDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNT 617

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L++  C+     +AL +F +M   +      CKPD +TY+T+  GL KE  V+ A   F 
Sbjct: 618 LLDCFCKNDEVELALKMFSKMTVMD------CKPDVLTYNTVIYGLIKENKVNHAFWFFH 671

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-----------------VQ 230
           ++K ++++PD VT  +L+ G        +A  +  + M Q                  V+
Sbjct: 672 QLK-KSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVE 730

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELM--------------------IQIGVRPDASV 270
             +    +   EL  NG   E S L+ L+                     ++G+ P  + 
Sbjct: 731 AEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLAS 790

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           YN L+          +A +LF  M++ GC  D F++ +L+  + K+ +I     LY EM+
Sbjct: 791 YNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMI 850

Query: 331 SKGIRPTVVTYN 342
           S+  +P  +TYN
Sbjct: 851 SRRCKPDAITYN 862



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 147/303 (48%), Gaps = 10/303 (3%)

Query: 45  SIGLFPDLY----TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100
           SI  FP +     T N ++       +V     V   + +     D  T+ ++ K L   
Sbjct: 111 SISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIR 170

Query: 101 SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160
             + +   +  K+R  G   + ++Y  LI+ L ++G    AL ++  M +         K
Sbjct: 171 GGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEG------LK 224

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P   TYS +   L K+   +    L  +M+D  + P+V T+T  IR    A   +EA  +
Sbjct: 225 PSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEI 284

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           F  M D+G  P++VT+ V+++ LC  G+++ A  L   M   G +PD  +Y TL+D F  
Sbjct: 285 FRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFND 344

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G ++  KE +  ME++G M DV ++ IL++  CK ++ + A + +  M  +GI P + T
Sbjct: 345 FGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHT 404

Query: 341 YNT 343
           YNT
Sbjct: 405 YNT 407



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 9/232 (3%)

Query: 11   HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
             P+P    ++  L   LAK    +  + LF+ ++  G  P+   +NILIN + K+G    
Sbjct: 890  RPTPR---TYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTET 946

Query: 71   GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
               +  R++     PD  ++T L+  LC   R+ EA   F +L++ G  PD   Y  +IN
Sbjct: 947  ACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIIN 1006

Query: 131  GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
            GL ++     AL L+ EM N     G+V  PD  TY+++   L   G V++AK ++ +++
Sbjct: 1007 GLGKSQRMEEALALYNEMRNR----GIV--PDLYTYNSLMLNLGLAGMVEQAKRMYEELQ 1060

Query: 191  DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
               + PDV TY +LIRG+  + +   A  ++  MM  G  PN+ T+  + N+
Sbjct: 1061 LAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPNQ 1112


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 168/344 (48%), Gaps = 12/344 (3%)

Query: 4   FDYMLRMHPSP---PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            D +  M   P   P    +N     L K+      + + K +      PD+ T+N LI 
Sbjct: 38  MDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIA 97

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK GR+     VL  + RS F  + VT+ +LI GL +  R  EA  +   ++     P
Sbjct: 98  GLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV---MQGMTTTP 154

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TY  +I+G C++G    A    EEM    G     C PD  TYS + +GLCK   + 
Sbjct: 155 DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAG-----CSPDTFTYSILINGLCKSSNLR 209

Query: 181 KAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           KA EL  +M   ++    VV + +L+ G+C A D + A+ L   M++ G  P+VVT++ I
Sbjct: 210 KADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTI 269

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LC+ G +D+   LLE M+  G +PD   Y  L+ G C  G++  A  L   M  +GC
Sbjct: 270 IDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGC 329

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  +Y ++ +G CK  +++ A  L + +  KG    VV + T
Sbjct: 330 TPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFET 373



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 154/297 (51%), Gaps = 9/297 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L   L K    D    +   +   G   +L TYN LIN     GR     +V
Sbjct: 87  PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA-FGCKPDVFTYTTLINGLC 133
           +  +     TPD  T+ ++I G C    I  A     +++   GC PD FTY+ LINGLC
Sbjct: 147 MQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           ++ +   A  L +EM          C    + ++T+ DG CK   +D+A+EL   M +  
Sbjct: 204 KSSNLRKADELLQEMIGRKD-----CCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG 258

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PDVVTY+++I G C   D ++   L  +M+ +G +P+VVT+ V++  LCK GKM EA 
Sbjct: 259 CAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEAC 318

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           RL++ M++ G  P+A  Y+ + DG C   +++ A +L  S+   G + DV ++  L+
Sbjct: 319 RLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 84/217 (38%), Gaps = 70/217 (32%)

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ----------------------------- 227
           D  TY  L+R  C A +   A  L  EM  Q                             
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 228 -------GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG----------------- 263
                    +P+VVTFN ++  LCK G++DEA ++L+ M + G                 
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 264 ---------------VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYG 307
                            PD   YN ++ GFC +G ++RA      M+   GC  D F+Y 
Sbjct: 137 AGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYS 196

Query: 308 ILINGYCKNKEIEGALSLYSEMLS-KGIRPTVVTYNT 343
           ILING CK+  +  A  L  EM+  K    +VV +NT
Sbjct: 197 ILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNT 233



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 61/119 (51%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V +++ +   L +    D   +L +++ S G  PD+ TY +L+   CK G++  
Sbjct: 257 HGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE 316

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
              ++ R+L    TP+AVT++ +  GLC   ++  A  L T +R  G   DV  + TL+
Sbjct: 317 ACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 175/357 (49%), Gaps = 32/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L +      V SL   + + GL P++  YN +IN  CK    S    +
Sbjct: 149 PTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDM 208

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++++S F PD VTF ++I G C E  + EA  L  +    G +P+  +YT LI+G C 
Sbjct: 209 LNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCV 268

Query: 135 TGHTIVALNLFEEMANGNGE-----------FGVVCK-------------------PDAI 164
            G  +VA +L  EM  G G             G+V                     PDA 
Sbjct: 269 RGEAMVASDLLVEMM-GRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDAN 327

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            Y+ +  GLCK+  +  AK L  +M ++ + PD   YT+LI GF  ++  ++A+ +F E 
Sbjct: 328 IYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIF-EF 386

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           M++   P++V +NV++   CK G M EA   +  M + G  PD   Y TL+DG+   G +
Sbjct: 387 MEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDI 446

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +  L   M    C  ++F+Y  LI GYC   +   A  L+++M S+G+ P VV Y
Sbjct: 447 SASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHY 503



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 162/332 (48%), Gaps = 42/332 (12%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  P    YN+LI+ +C+ G +  G ++LG +      P  VT+ ++I  L  +  + + 
Sbjct: 111 GCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKV 170

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
            +L  ++RA G  P+V  Y T+IN LC+      A ++  +M            PD +T+
Sbjct: 171 ESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSR------FNPDVVTF 224

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+  G C+EG V +A +L  +     + P+ ++YT LI GFC   +   A  L +EMM 
Sbjct: 225 NTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMG 284

Query: 227 QGVQPNVVT-----------------------------------FNVIMNELCKNGKMDE 251
           +G  P+++T                                   +NV+++ LCK   +  
Sbjct: 285 RGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSA 344

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  LLE M++  V+PD  +Y TL+DGF  + +++ A+++F  ME   C  D+ +Y ++I 
Sbjct: 345 AKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKAC-PDIVAYNVMIK 403

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           GYCK   ++ A++  S M   G  P   TY T
Sbjct: 404 GYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTT 435



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 139/295 (47%), Gaps = 10/295 (3%)

Query: 51  DLYTYNILINCFCKMGRVSPGF-VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           D Y+  +++   C  GRV  G  ++  R    C  P AV +  LI G C    I     L
Sbjct: 80  DDYSTCVMVRGLCLEGRVEEGRGLIEARWGEGC-VPGAVFYNVLIDGYCRRGDIGRGLLL 138

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYST 168
             ++   G  P V TY  +I+ L R G      +L  EM A G         P+   Y+T
Sbjct: 139 LGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARG-------LSPNVQIYNT 191

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           + + LCK     +A ++  +M     NPDVVT+ ++I GFC   D  EA  L  E + +G
Sbjct: 192 VINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRG 251

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           ++PN +++  +++  C  G+   AS LL  M+  G  PD      L+ G  ++G+VN A 
Sbjct: 252 LEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDAL 311

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +   M     M D   Y +LI+G CK + +  A +L  EML + ++P    Y T
Sbjct: 312 IVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTT 366



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 160/354 (45%), Gaps = 24/354 (6%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + M R H   P + +   L   L  +   +  L + +++    + PD   YN+LI+  
Sbjct: 279 LVEMMGRGHT--PDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGL 336

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK   +S    +L  +L     PD   +T+LI G     ++ +A  +F  +    C PD+
Sbjct: 337 CKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKAC-PDI 395

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  +I G C+ G    A+     M          C PD  TY+T+ DG  K+G +  +
Sbjct: 396 VAYNVMIKGYCKFGMMKEAVTCMSSMRKAG------CIPDEFTYTTLVDGYAKKGDISAS 449

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M      P++ TY SLI G+C   D   A+ LF +M  +G+ PNVV + V++  
Sbjct: 450 LRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGS 509

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF--CLTGRVNRAK------------ 288
           L K  K+ +A+   E M+     P+ +  + L++G   C  G VN  +            
Sbjct: 510 LFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSAL 569

Query: 289 -ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++F  + S+G    + +Y  +I   C++  +  A+ L  +M +KG  P  +T+
Sbjct: 570 LDVFRGLISDGLDPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITF 623



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 6/236 (2%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
            A  L+ ++       D ++   ++ GLC  G       L E        +G  C P A+
Sbjct: 64  RARGLYGEMLVREGGADDYSTCVMVRGLCLEGRVEEGRGLIE------ARWGEGCVPGAV 117

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            Y+ + DG C+ G + +   L  +M+ + I P VVTY ++I       D  + + L  EM
Sbjct: 118 FYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEM 177

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
             +G+ PNV  +N ++N LCK     +AS +L  M++    PD   +NT++ GFC  G V
Sbjct: 178 RARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDV 237

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             A +L       G   +  SY  LI+G+C   E   A  L  EM+ +G  P ++T
Sbjct: 238 REALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMIT 293



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 145/367 (39%), Gaps = 60/367 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N+L   L K +      +L + +    + PD + Y  LI+ F +  ++S    +
Sbjct: 324 PDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKI 383

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               +     PD V +  +IKG C    + EA    + +R  GC PD FTYTTL++G  +
Sbjct: 384 F-EFMEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAK 442

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    +L L  +M          CKP+  TY+++  G C  G    A++LF KM+ E +
Sbjct: 443 KGDISASLRLLCDMMKRR------CKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGL 496

Query: 195 NPDVVTYTSLIRGF--------------------CYANDW-------------------- 214
            P+VV YT LI                       C  ND                     
Sbjct: 497 FPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSN 556

Query: 215 -------NEAKCL---FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
                  +E   L   F  ++  G+ P +  +N I+  LC++  + +A  L + M   G 
Sbjct: 557 RSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKGC 616

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK---EIEG 321
            PD   + +L+ GF   G   + +    +         +  Y  L N +  +    E+  
Sbjct: 617 LPDPITFLSLLYGFSSAGESGKWRSALPNEFQQDEFEIITKYMALFNQHVTSSVVGEVSR 676

Query: 322 ALSLYSE 328
            L LYSE
Sbjct: 677 ILQLYSE 683


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 177/365 (48%), Gaps = 46/365 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN     L K         L  R+   G  P+ +TY +L++  C+MG+V    ++
Sbjct: 303 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 362

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLC 133
           L ++      P+ V F +LI G  +  R+ EA A +   + + GC PD+FTY TLI GLC
Sbjct: 363 LNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLC 418

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM---- 189
           + G+ + A  L  EM          C+P+ ITY+ + D  CKEG +++A+ +  +M    
Sbjct: 419 KKGYLVSARELMNEMQIKG------CEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 472

Query: 190 ----------------KDENIN---------------PDVVTYTSLIRGFCYANDWNEAK 218
                           KDE +                PD+ T+ SLI G C  N + EA 
Sbjct: 473 LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEAL 532

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L+ +M+ +GV  N +T+N +++   + G M EA +L+  M+  G   D   YN L+   
Sbjct: 533 GLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKAL 592

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G + +   LF  M S G   +  S  ILING C+   I+ AL    +M+ +G+ P +
Sbjct: 593 CRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDI 652

Query: 339 VTYNT 343
           VTYN+
Sbjct: 653 VTYNS 657



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 168/330 (50%), Gaps = 11/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F ++   L      D+  +L K +   G  P+   Y  LI+   K+GRV+    +
Sbjct: 233 PTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKL 292

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD  TF   I GLC   RI EAA L  ++   G  P+ FTY  L++GLCR
Sbjct: 293 LEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCR 352

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK-MKDEN 193
            G    A  L  ++ N          P+ + ++T+ +G    G +D+AK +  + M    
Sbjct: 353 MGKVDEARMLLNKVPN----------PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVG 402

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD+ TY +LI G C       A+ L  EM  +G +PNV+T+ ++++  CK G+++EA 
Sbjct: 403 CGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEAR 462

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L+ M   G+  +A  YN L+   C   +V  A  +F  M S GC  D+F++  LI G 
Sbjct: 463 NVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGL 522

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK  + E AL LY +ML +G+    +TYNT
Sbjct: 523 CKVNKFEEALGLYQDMLLEGVIANTITYNT 552



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K  +  +   L   +   G  P++ TY ILI+ FCK GR+     V
Sbjct: 405 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 464

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +       +AV +  LI  LC + ++ +A  +F  + + GCKPD+FT+ +LI GLC+
Sbjct: 465 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 524

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L+++M       GV+   + ITY+T+     + G + +A +L   M     
Sbjct: 525 VNKFEEALGLYQDMLLE----GVIA--NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGC 578

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY  LI+  C A +  +   LF +MM +G+ PN ++ N+++N LC+ G +  A  
Sbjct: 579 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 638

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  MI  G+ PD   YN+L++G C TGR   A  LF  ++  G   D  +Y  LI+ +C
Sbjct: 639 FLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHC 698

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K    + A  L S  +  G  P  VT+
Sbjct: 699 KEGMFDDAHLLLSRGVDSGFIPNEVTW 725



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 4/185 (2%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C+P   +Y+ + D L           +F +M  + I+P V T+  +++  C  N+ + A 
Sbjct: 196 CEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSAC 255

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M   G  PN + +  +++ L K G+++E  +LLE M+ +G  PD + +N  + G 
Sbjct: 256 ALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGL 315

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   R++ A +L   M   G   + F+YG+L++G C+  +++ A  L    L+K   P V
Sbjct: 316 CKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML----LNKVPNPNV 371

Query: 339 VTYNT 343
           V +NT
Sbjct: 372 VLFNT 376



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 1/145 (0%)

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            Y  LI     A ++     L ++M  +G+      F +IM    + G   +A+RLL  M
Sbjct: 131 VYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM 190

Query: 260 IQI-GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
             +    P    YN ++D             +F  M S G    V+++G+++   C   E
Sbjct: 191 RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNE 250

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A +L  +M   G  P  + Y T
Sbjct: 251 VDSACALLKDMTRHGCVPNAIVYQT 275


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 179/329 (54%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++++    L K +  D    + K ++ +G  P+   YN LI+ +CKMG +S    +
Sbjct: 324 PSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKI 383

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L    +P++VT  SLI+G C   +I +A  +  ++   G   +  +++ +IN LC 
Sbjct: 384 RDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCL 443

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + AL+   EM   N       +P+    +T+  GLCK G   +A EL+ ++  +  
Sbjct: 444 KFRFVTALHFIREMLLRN------LRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGF 497

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++VT  +LI G C A +  E   L  +M+++G+  + +T+N +++  CK GK+ E   
Sbjct: 498 VPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFE 557

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M++ G++PD   +N L+ G C   +++ A  L+   + NG + +V++YG++I+GYC
Sbjct: 558 LKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYC 617

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++E   +L +E++SK +    V YN+
Sbjct: 618 KANKVEEGENLLNELVSKKLELNSVVYNS 646



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 159/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + N L   L K  +    L L + +   GL  D  TYN LI+  CK G+V  GF +
Sbjct: 499 PNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFEL 558

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    PD  TF  L+ GLC   +I EA+ L+ + +  G  P+V+TY  +I+G C+
Sbjct: 559 KEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCK 618

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                   NL  E+ +   E       +++ Y+++    C  G ++ A  L   MK   +
Sbjct: 619 ANKVEEGENLLNELVSKKLEL------NSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGV 672

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
                TY+SL+ G C     ++AK L  EM  +G+ PNVV +  I+    K G+M++ + 
Sbjct: 673 LLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNI 732

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+ M    + P+   Y  ++DGFC  G+   A +L   M   G + D  +Y    NG C
Sbjct: 733 VLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLC 792

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  ++E A  +  EM S  +    +TY T
Sbjct: 793 KEGKVEEAFKVCDEMSSGAVCLDEITYTT 821



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 162/321 (50%), Gaps = 6/321 (1%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82
           L   L K       + L+ RL   G  P++ T N LI+  CK G +     +L  +L   
Sbjct: 472 LVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERG 531

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
              D +T+ +LI G C E ++ E   L  ++   G +PD++T+  L++GLC       A 
Sbjct: 532 LVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEAS 591

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            L+ E    NG       P+  TY  + DG CK   V++ + L  ++  + +  + V Y 
Sbjct: 592 RLWHE-CKKNGYV-----PNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYN 645

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           SLIR +C   + N A  L  +M  +GV  +  T++ +M+ LC  G +D+A  LL+ M + 
Sbjct: 646 SLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKE 705

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G+ P+   Y T++ G+   G++N+   +   M S+    + F+Y I+I+G+CK  + + A
Sbjct: 706 GLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEA 765

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
             L +EM  KGI P  VTYN 
Sbjct: 766 AKLLNEMTEKGILPDAVTYNA 786



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 168/362 (46%), Gaps = 41/362 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  F+ +     K    D  + LF ++  +G+ P++ TYN +I+  CK GR+   +  
Sbjct: 254 PDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRF 313

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++++   +P  +T++  I GL    +I EA  +  ++   G  P+   Y TLI+G C+
Sbjct: 314 KEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCK 373

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD--- 191
            G+   AL + ++M +          P+++T +++  G CK   + +A+ +  +M     
Sbjct: 374 MGNISEALKIRDDMLSKG------ISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGL 427

Query: 192 --------------------------------ENINPDVVTYTSLIRGFCYANDWNEAKC 219
                                            N+ P+    T+L+ G C A    EA  
Sbjct: 428 PINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVE 487

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L+  ++ +G  PN+VT N +++ LCK G M E  +LL  M++ G+  D   YNTL+ G C
Sbjct: 488 LWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCC 547

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G+V    EL   M   G   D++++ +L++G C   +I+ A  L+ E    G  P V 
Sbjct: 548 KEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVY 607

Query: 340 TY 341
           TY
Sbjct: 608 TY 609



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 169/341 (49%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I D ML    SP  V + N L     K+       ++ + +   GL  +  +++++IN  
Sbjct: 383 IRDDMLSKGISPNSV-TLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWL 441

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   R       +  +L     P+    T+L+ GLC   +  EA  L+ +L   G  P++
Sbjct: 442 CLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNI 501

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T   LI+GLC+ G+    L L  +M     E G+V   D ITY+T+  G CKEG V + 
Sbjct: 502 VTSNALIHGLCKAGNMQETLKLLRDML----ERGLVF--DRITYNTLISGCCKEGKVKEG 555

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            EL  +M  + I PD+ T+  L+ G C A+  +EA  L+ E    G  PNV T+ V+++ 
Sbjct: 556 FELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDG 615

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK  K++E   LL  ++   +  ++ VYN+L+  +C+ G +N A  L   M+S G +  
Sbjct: 616 YCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLS 675

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y  L++G C    ++ A  L  EM  +G+ P VV Y T
Sbjct: 676 CATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTT 716



 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 159/336 (47%), Gaps = 33/336 (9%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           +F  L   GLFP L T   L++   K   +   + V   I      PD   F+++I   C
Sbjct: 208 VFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFC 267

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG------- 151
              R  +A  LF+K+   G  P+V TY  +I+GLC++G    A    E+M          
Sbjct: 268 KGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLI 327

Query: 152 ------NG------------------EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
                 NG                  E G V  P+ + Y+T+ DG CK G + +A ++  
Sbjct: 328 TYSVFINGLIKLEKIDEANCVLKEMSELGFV--PNEVVYNTLIDGYCKMGNISEALKIRD 385

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M  + I+P+ VT  SLI+GFC ++   +A+ +  EM+ +G+  N  +F++++N LC   
Sbjct: 386 DMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKF 445

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           +   A   +  M+   +RP+  +  TL+ G C  G+   A EL+  +   G + ++ +  
Sbjct: 446 RFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSN 505

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LI+G CK   ++  L L  +ML +G+    +TYNT
Sbjct: 506 ALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNT 541



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 128/229 (55%), Gaps = 6/229 (2%)

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           AA +F+ L   G  P + T T L++ L +      +  +++ +  G    G++  PD   
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLG----GII--PDVHL 258

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +ST+ +  CK    D A  LF KM+   + P+VVTY ++I G C +   +EA     +M+
Sbjct: 259 FSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMV 318

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            + V P+++T++V +N L K  K+DEA+ +L+ M ++G  P+  VYNTL+DG+C  G ++
Sbjct: 319 KEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNIS 378

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            A ++   M S G   +  +   LI G+CK+ +I  A ++  EM+ +G+
Sbjct: 379 EALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGL 427



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%)

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A ++F  +  + + P + T T L+     AN+  ++  ++  +   G+ P+V  F+ ++N
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK  + D+A  L   M ++GV P+   YN ++ G C +GR++ A      M       
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + +Y + ING  K ++I+ A  +  EM   G  P  V YNT
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNT 366



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 34/86 (39%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   ++ I+     K         L   +   G+ PD  TYN   N  CK G+V  
Sbjct: 740 HNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEE 799

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKG 96
            F V   +       D +T+T+LI G
Sbjct: 800 AFKVCDEMSSGAVCLDEITYTTLIDG 825


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 174/334 (52%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + + H    P  +   +   L K K++  V   ++     G    LY +NIL++ F K G
Sbjct: 91  LTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +L+ G      + E   L   ++A G +PDV+TY+
Sbjct: 151 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM N     G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 211 VLINGLCKESKMEDANELFDEMLNN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A+ L  EM  +G++P+ +T+  +++  CK 
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A    + MI+  +R D   Y  L+ G C  GR   A+++   M S G   ++ +Y
Sbjct: 325 GHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK  ++     L  EM   G  P+VVT
Sbjct: 385 TMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 100/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KM++A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTT 316



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVCK------PDAITYSTITD 171
           +Y T+I+ LC       A  L + + +  G+      F  + +       D   +S +  
Sbjct: 15  SYCTMIHFLCTHQMIAEAKTLIQIVVSRKGKGSASAVFAAILETKGTQISDIYVFSGLIT 74

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   K+        T   +I        +      + E ++ G   
Sbjct: 75  AYLESGFLRDAIECYRLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPA 134

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+   K G++  A  + + + + G+RP    +NTLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +M+++G   DV++Y +LING CK  ++E A  L+ EML+ G+ P  VT+ T
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTT 246


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 173/319 (54%), Gaps = 6/319 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++ +L   L KN        +++++   G+FP+LYTYN ++N  CK GR    F V   +
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                + + VT+ +LI GLC E ++ EA  +  ++++ G  P++ TY TLI+G C  G  
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL+L  ++ +          P  +TY+ +  G C++G    A ++  +M++  I P  
Sbjct: 355 GKALSLCRDLKSRG------LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSK 408

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTYT LI  F  +++  +A  L + M + G+ P+V T++V+++  C  G+M+EASRL + 
Sbjct: 409 VTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKS 468

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M++    P+  +YNT++ G+C  G   RA +L   ME      +V SY  +I   CK ++
Sbjct: 469 MVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERK 528

Query: 319 IEGALSLYSEMLSKGIRPT 337
            + A  L  +M+  GI P+
Sbjct: 529 SKEAERLVEKMIDSGIDPS 547



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 185/364 (50%), Gaps = 42/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    FN L   +  +  ++   S F   N   +  D+Y++ ILI   C+ G +   F +
Sbjct: 127 PGSNCFNYLLTFVVGSSSFNQWWSFFNE-NKSKVVLDVYSFGILIKGCCEAGEIEKSFDL 185

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF------------------------ 110
           L  +    F+P+ V +T+LI G C +  I +A  LF                        
Sbjct: 186 LIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFK 245

Query: 111 -----------TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                       K++  G  P+++TY  ++N LC+ G T  A  +F+EM     E GV C
Sbjct: 246 NGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMR----ERGVSC 301

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
             + +TY+T+  GLC+E  +++A ++  +MK + INP+++TY +LI GFC      +A  
Sbjct: 302 --NIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALS 359

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  ++  +G+ P++VT+N++++  C+ G    A+++++ M + G++P    Y  L+D F 
Sbjct: 360 LCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFA 419

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            +  + +A +L +SME  G + DV +Y +LI+G+C   ++  A  L+  M+ K   P  V
Sbjct: 420 RSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEV 479

Query: 340 TYNT 343
            YNT
Sbjct: 480 IYNT 483



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 172/341 (50%), Gaps = 10/341 (2%)

Query: 4   FDYMLRMHP---SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           FD ++ +     SP  V    ++ GC  K +  +    LF  +  +GL  +  TY +LIN
Sbjct: 183 FDLLIELTEFGFSPNVVIYTTLIDGCCKKGE-IEKAKDLFFEMGKLGLVANERTYTVLIN 241

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K G    GF +  ++      P+  T+  ++  LC + R  +A  +F ++R  G   
Sbjct: 242 GLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSC 301

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY TLI GLCR      A  + ++M +          P+ ITY+T+ DG C  G + 
Sbjct: 302 NIVTYNTLIGGLCREMKLNEANKVVDQMKSDG------INPNLITYNTLIDGFCGVGKLG 355

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA  L   +K   ++P +VTY  L+ GFC   D + A  +  EM ++G++P+ VT+ +++
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   ++  M++A +L   M ++G+ PD   Y+ L+ GFC+ G++N A  LF SM    C 
Sbjct: 416 DTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCE 475

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +   Y  +I GYCK      AL L  EM  K + P V +Y
Sbjct: 476 PNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASY 516



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 174/339 (51%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +  Y+     S      + ++     +++  +  +S F  +   G  P    +N L+   
Sbjct: 80  LLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFV 139

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
                 +  +       +S    D  +F  LIKG C    I ++  L  +L  FG  P+V
Sbjct: 140 VGSSSFNQWWSFFNEN-KSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNV 198

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YTTLI+G C+ G    A +LF EM    G+ G+V   +  TY+ + +GL K G   + 
Sbjct: 199 VIYTTLIDGCCKKGEIEKAKDLFFEM----GKLGLVA--NERTYTVLINGLFKNGVKKQG 252

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E++ KM+++ + P++ TY  ++   C      +A  +F EM ++GV  N+VT+N ++  
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGG 312

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+  K++EA+++++ M   G+ P+   YNTL+DGFC  G++ +A  L   ++S G    
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +Y IL++G+C+  +  GA  +  EM  +GI+P+ VTY
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTY 411



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 7/270 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M R       + ++N L G L +    +    +  ++ S G+ P+L TYN LI+
Sbjct: 288 FQVFDEM-RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLID 346

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FC +G++     +   +     +P  VT+  L+ G C +     AA +  ++   G KP
Sbjct: 347 GFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKP 406

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
              TYT LI+   R+ +   A+ L   M     E G+V  PD  TYS +  G C +G ++
Sbjct: 407 SKVTYTILIDTFARSDNMEKAIQLRLSME----ELGLV--PDVHTYSVLIHGFCIKGQMN 460

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  LF  M ++N  P+ V Y ++I G+C       A  L  EM ++ + PNV ++  ++
Sbjct: 461 EASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMI 520

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASV 270
             LCK  K  EA RL+E MI  G+ P  S+
Sbjct: 521 EVLCKERKSKEAERLVEKMIDSGIDPSTSI 550



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           + VI+N   ++  ++ +      M+  G  P ++ +N L+     +   N+    F   +
Sbjct: 97  YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENK 156

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           S   + DV+S+GILI G C+  EIE +  L  E+   G  P VV Y T
Sbjct: 157 SKVVL-DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTT 203


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 172/330 (52%), Gaps = 10/330 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   + N +   LA+++    V  LF++L +    P+++T+NI+I+  CK G ++    
Sbjct: 154 PPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKEGELAEARS 209

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  R+      PD VTF SLI G      + E   L  ++R  GCK DV TY  LIN  C
Sbjct: 210 LFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFC 269

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A   F  M       GV+   + +T+ST  D  CKEG V +A +LF +M+   
Sbjct: 270 KFGRMETAYGYFAAMKRE----GVMA--NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRG 323

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  +  TYT LI G C A   ++A  L  EM+ QGV  NVVT+ V+++ LCK  K+ EA 
Sbjct: 324 MALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAE 383

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L +M + GVR +  +Y TL+ G  +     +A  L   M++ G   D+  YG LI G 
Sbjct: 384 DVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL 443

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C   +++ A SL ++M   G+ P  + Y T
Sbjct: 444 CNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 168/355 (47%), Gaps = 29/355 (8%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +F+       K       + LF ++   G+  + +TY  LI+  CK GR+    V+L 
Sbjct: 293 VVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLD 352

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++R     + VT+T L+ GLC E ++ EA  +   +   G + +   YTTLI+G     
Sbjct: 353 EMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNK 412

Query: 137 HTIVALNLFEEMANGNGEFGV---------VC--------------------KPDAITYS 167
           ++  AL L  EM N   E  +         +C                    +P+ I Y+
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           T+ D   K G V +A  +  K+ D    P+V+TY +LI G C A   +EA   F +M D 
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDL 532

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G+ PNV  +  +++ LCKNG ++EA +L   M+  G+  D  VY  L+DG+   G ++ A
Sbjct: 533 GLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDA 592

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             L   M  +G   D+F Y   I+G+C    +  A  ++SEM+  GI P    YN
Sbjct: 593 FALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYN 647



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 157/327 (48%), Gaps = 7/327 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R    P  V ++ +L   L K +       + + +   G+  +   Y  LI+  
Sbjct: 350 LLDEMVR-QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGH 408

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
                      +L  +       D   + +LI+GLC   ++ EA +L TK+   G +P+ 
Sbjct: 409 FMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNY 468

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YTT+++   ++G    A+ + +++ +   +      P+ ITY  + DGLCK G +D+A
Sbjct: 469 IIYTTMMDACFKSGKVPEAIAMLQKILDSGFQ------PNVITYCALIDGLCKAGSIDEA 522

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
              F KM+D  ++P+V  YT+L+ G C     NEA  LF EM+ +G+  + V +  +++ 
Sbjct: 523 ISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDG 582

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K G + +A  L   MI  G++ D   Y   + GFC    +  A+E+F  M  +G   D
Sbjct: 583 YLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEM 329
              Y  LI+ Y K   +E A+SL  EM
Sbjct: 643 RAVYNCLISKYQKLGNLEEAISLQDEM 669



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 10/244 (4%)

Query: 23  LFGCLAK---NKH-YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           L+G L +   N H  D   SL  +++  GL P+   Y  +++   K G+V     +L +I
Sbjct: 435 LYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKI 494

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L S F P+ +T+ +LI GLC    I EA + F K+R  G  P+V  YT L++GLC+ G  
Sbjct: 495 LDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCL 554

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+ LF EM +           D + Y+ + DG  K+G +  A  L  KM D  +  D+
Sbjct: 555 NEAVQLFNEMVHKGMSL------DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDL 608

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
             YT  I GFC  N   EA+ +F EM+  G+ P+   +N ++++  K G ++EA  L + 
Sbjct: 609 FCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDE 668

Query: 259 MIQI 262
           M ++
Sbjct: 669 MERV 672



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 127/255 (49%), Gaps = 10/255 (3%)

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
           A    +L+  L     + +A     ++R     P+  T   ++  L R     +   LFE
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFE 181

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           ++            P+  T++ + D LCKEG + +A+ LF +MK+    PDVVT+ SLI 
Sbjct: 182 QLP----------APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLID 231

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G+    + +E + L  EM   G + +VVT+N ++N  CK G+M+ A      M + GV  
Sbjct: 232 GYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMA 291

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           +   ++T +D FC  G V  A +LF  M   G   + F+Y  LI+G CK   ++ A+ L 
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 327 SEMLSKGIRPTVVTY 341
            EM+ +G+   VVTY
Sbjct: 352 DEMVRQGVPLNVVTY 366



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 137/266 (51%), Gaps = 6/266 (2%)

Query: 30  NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
           NK+ +  L L   + + GL  D+  Y  LI   C + ++     +L ++  S   P+ + 
Sbjct: 411 NKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYII 470

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           +T+++       ++ EA A+  K+   G +P+V TY  LI+GLC+ G    A++ F +M 
Sbjct: 471 YTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMR 530

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           +     G+   P+   Y+ + DGLCK G +++A +LF +M  + ++ D V YT+L+ G+ 
Sbjct: 531 D----LGL--DPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYL 584

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
              + ++A  L  +M+D G+Q ++  +   ++  C    M EA  +   MI  G+ PD +
Sbjct: 585 KQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRA 644

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSME 295
           VYN L+  +   G +  A  L   ME
Sbjct: 645 VYNCLISKYQKLGNLEEAISLQDEME 670


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 175/336 (52%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 72  LTRKHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 131

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P AV++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 132 DIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYS 191

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 192 VLINGLCKESKMDDADELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 245

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  +M  +G++P+ +T+  +++  CK 
Sbjct: 246 KQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKE 305

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +  A    + +IQ  +R D  VY  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 306 GVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTY 365

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 366 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYN 401



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 162/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P   +YN L+N + ++G +  GF 
Sbjct: 114 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFR 173

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 174 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHC 233

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A +L   M  + 
Sbjct: 234 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKG 287

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C       A      ++ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 288 LKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAE 347

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G+ PD   Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 348 KMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 406



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 97/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P  V+Y +L+ G+      +E   L   M+  GVQP+V
Sbjct: 128 CKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDV 187

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A  L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 188 YTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 247

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  +M  KG++P  +TY T
Sbjct: 248 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTT 297



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 75/123 (60%)

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           + E+++ G   ++  FN++M+  CK+G +  A  + + + + G+RP A  YNTLM+G+  
Sbjct: 105 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIR 164

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G ++    L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT
Sbjct: 165 LGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVT 224

Query: 341 YNT 343
           + T
Sbjct: 225 FTT 227


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 171/362 (47%), Gaps = 55/362 (15%)

Query: 28  AKNKHYDTVLSLFKRLNSIGLF-----------PDLYTYNILINCFCKMGRVSPGFVVLG 76
           A+     T  +L K+L++ G             PD+  YN ++  +C  G+V        
Sbjct: 93  ARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMMAGYCGAGQVDAARRWCA 152

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
                    DA T  +LI+GLC   R   A A+  ++    C PDV TYT L+   C+  
Sbjct: 153 E---RAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRS 209

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ L +EM +        C PD +TY+ + +G+C+EG VD A E    +      P
Sbjct: 210 GYKQAMKLLDEMRDKG------CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEP 263

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG--------- 247
           + V+Y  +++G C A  W +A+ L  EM  +G  PNVVTFN++++ LC+ G         
Sbjct: 264 NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 323

Query: 248 --------------------------KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
                                     KMD+A   L+LM+  G  PD   YNTL+   C +
Sbjct: 324 EQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRS 383

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G V+ A EL   ++  GC   + SY  +I+G  K  + + AL L +EM+SKG++P ++TY
Sbjct: 384 GEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITY 443

Query: 342 NT 343
           +T
Sbjct: 444 ST 445



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 168/342 (49%), Gaps = 7/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             + D MLR     P V ++ IL     K   Y   + L   +   G  PD+ TYN+++N
Sbjct: 180 LAVLDEMLRRR-CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVN 238

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ GRV      L  +      P+ V++  ++KGLC   R  +A  L  ++   GC P
Sbjct: 239 GICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPP 298

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V T+  LI+ LCR G    AL + E++     ++G  C P++++Y+ +    CK+  +D
Sbjct: 299 NVVTFNMLISFLCRKGLVEPALEVLEQIP----KYG--CSPNSLSYNPLLHAFCKQKKMD 352

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA      M      PD+V+Y +L+   C + + + A  L  ++ D+G  P ++++N ++
Sbjct: 353 KAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVI 412

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L K GK  EA  LL  M+  G++PD   Y+T+  G C   R+  A   F  ++  G  
Sbjct: 413 DGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIR 472

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +   Y  +I G CK +E   A+ L++ M+  G  P   TY 
Sbjct: 473 PNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYT 514



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 111/249 (44%), Gaps = 18/249 (7%)

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++ L     + EA  L    R    +PD  T   LI  L  +G T  A  +         
Sbjct: 74  LRSLVRRGELDEALRLVGSAR----RPDAGTCAALIKKLSASGRTAEARRVL-------- 121

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                C PD + Y+ +  G C  G VD A+       +  +  D  T  +LIRG C    
Sbjct: 122 ---AACGPDVMAYNAMMAGYCGAGQVDAARRW---CAERAVERDAYTCDTLIRGLCGRGR 175

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
              A  +  EM+ +   P+VVT+ +++   CK     +A +LL+ M   G  PD   YN 
Sbjct: 176 TANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNV 235

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           +++G C  GRV+ A E   ++ S GC  +  SY I++ G C  +  E A  L  EM  KG
Sbjct: 236 VVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG 295

Query: 334 IRPTVVTYN 342
             P VVT+N
Sbjct: 296 CPPNVVTFN 304



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 65/150 (43%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           + L+     P + S+N +   L K       L L   + S GL PD+ TY+ +    C+ 
Sbjct: 394 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 453

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
            R+       G++      P+ V + ++I GLC       A  LF  +   GC P+  TY
Sbjct: 454 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 513

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEF 155
           T LI GL   G    A +L +E+ +   E 
Sbjct: 514 TILIEGLAYEGLIKEARDLLDELCSRGEEI 543


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 172/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 83  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 142

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 143 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 202

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G++  P+ +T++T+ DG CK G VD A E++
Sbjct: 203 VLINGLCKESKMDDANELFDEMLVK----GLI--PNGVTFTTLIDGRCKNGRVDLAMEIY 256

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 257 KRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKE 316

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S     D  +Y
Sbjct: 317 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTY 376

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 377 TMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYN 412



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 125 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 184

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 185 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRC 244

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ +++ M + +        PD ITY+T+  GLCK+G + +A +L  +M  + 
Sbjct: 245 KNGRVDLAMEIYKRMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 298

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 299 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 358

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ + ++PD   Y  +++ FC  G V +  +L   M+ +G    V +Y +L+NG
Sbjct: 359 KMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 99/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 139 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 198

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 199 YTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKR 258

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P   TY T
Sbjct: 259 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 308



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +
Sbjct: 5   LHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFATILETKGTQRSDIYVFSGL 64

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF   A E +   ++  +     T   ++        +      + E+++ G 
Sbjct: 65  ITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 124

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++    
Sbjct: 125 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 184

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 185 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTT 238


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 172/330 (52%), Gaps = 10/330 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   + N +   LA+++    V  LF++L +    P+++T+NI+I+  CK G ++    
Sbjct: 154 PPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKEGELAEARS 209

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  R+      PD VTF SLI G      + E   L  ++R  GCK DV TY  LIN  C
Sbjct: 210 LFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFC 269

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A   F  M       GV+   + +T+ST  D  CKEG V +A +LF +M+   
Sbjct: 270 KFGRMETAYGYFAAMKRE----GVMA--NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRG 323

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  +  TYT LI G C A   ++A  L  EM+ QGV  NVVT+ V+++ LCK  K+ EA 
Sbjct: 324 MALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAE 383

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L +M + GVR +  +Y TL+ G  +     +A  L   M++ G   D+  YG LI G 
Sbjct: 384 DVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGL 443

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C   +++ A SL ++M   G+ P  + Y T
Sbjct: 444 CNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 168/355 (47%), Gaps = 29/355 (8%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +F+       K       + LF ++   G+  + +TY  LI+  CK GR+    V+L 
Sbjct: 293 VVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLD 352

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++R     + VT+T L+ GLC E ++ EA  +   +   G + +   YTTLI+G     
Sbjct: 353 EMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNK 412

Query: 137 HTIVALNLFEEMANGNGEFGV---------VC--------------------KPDAITYS 167
           ++  AL L  EM N   E  +         +C                    +P+ I Y+
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           T+ D   K G V +A  +  K+ D    P+V+TY +LI G C A   +EA   F +M D 
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDL 532

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G+ PNV  +  +++ LCKNG ++EA +L   M+  G+  D  VY  L+DG+   G ++ A
Sbjct: 533 GLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDA 592

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             L   M  +G   D+F Y   I+G+C    +  A  ++SEM+  GI P    YN
Sbjct: 593 FALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYN 647



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 157/327 (48%), Gaps = 7/327 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R    P  V ++ +L   L K +       + + +   G+  +   Y  LI+  
Sbjct: 350 LLDEMVR-QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGH 408

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
                      +L  +       D   + +LI+GLC   ++ EA +L TK+   G +P+ 
Sbjct: 409 FMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNY 468

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YTT+++   ++G    A+ + +++ +         +P+ ITY  + DGLCK G +D+A
Sbjct: 469 IIYTTMMDACFKSGKVPEAIAMLQKILDSG------FQPNVITYCALIDGLCKAGSIDEA 522

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
              F KM+D  ++P+V  YT+L+ G C     NEA  LF EM+ +G+  + V +  +++ 
Sbjct: 523 ISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDG 582

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K G + +A  L   MI  G++ D   Y   + GFC    +  A+E+F  M  +G   D
Sbjct: 583 YLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD 642

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEM 329
              Y  LI+ Y K   +E A+SL  EM
Sbjct: 643 RAVYNCLISKYQKLGNLEEAISLQDEM 669



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 133/259 (51%), Gaps = 12/259 (4%)

Query: 23  LFGCLAK---NKH-YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           L+G L +   N H  D   SL  +++  GL P+   Y  +++   K G+V     +L +I
Sbjct: 435 LYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKI 494

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L S F P+ +T+ +LI GLC    I EA + F K+R  G  P+V  YT L++GLC+ G  
Sbjct: 495 LDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCL 554

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+ LF EM +           D + Y+ + DG  K+G +  A  L  KM D  +  D+
Sbjct: 555 NEAVQLFNEMVHKGMSL------DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDL 608

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
             YT  I GFC  N   EA+ +F EM+  G+ P+   +N ++++  K G ++EA  L + 
Sbjct: 609 FCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDE 668

Query: 259 MIQIGVRPDASVYNTLMDG 277
           M +  V P  +  +T  DG
Sbjct: 669 MER--VLPSCTDSDTATDG 685



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 127/255 (49%), Gaps = 10/255 (3%)

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
           A    +L+  L     + +A     ++R     P+  T   ++  L R     +   LFE
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFE 181

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           ++            P+  T++ + D LCKEG + +A+ LF +MK+    PDVVT+ SLI 
Sbjct: 182 QLP----------APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLID 231

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G+    + +E + L  EM   G + +VVT+N ++N  CK G+M+ A      M + GV  
Sbjct: 232 GYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMA 291

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           +   ++T +D FC  G V  A +LF  M   G   + F+Y  LI+G CK   ++ A+ L 
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLL 351

Query: 327 SEMLSKGIRPTVVTY 341
            EM+ +G+   VVTY
Sbjct: 352 DEMVRQGVPLNVVTY 366



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 137/266 (51%), Gaps = 6/266 (2%)

Query: 30  NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
           NK+ +  L L   + + GL  D+  Y  LI   C + ++     +L ++  S   P+ + 
Sbjct: 411 NKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYII 470

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           +T+++       ++ EA A+  K+   G +P+V TY  LI+GLC+ G    A++ F +M 
Sbjct: 471 YTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMR 530

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           +     G+   P+   Y+ + DGLCK G +++A +LF +M  + ++ D V YT+L+ G+ 
Sbjct: 531 D----LGL--DPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYL 584

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
              + ++A  L  +M+D G+Q ++  +   ++  C    M EA  +   MI  G+ PD +
Sbjct: 585 KQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRA 644

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSME 295
           VYN L+  +   G +  A  L   ME
Sbjct: 645 VYNCLISKYQKLGNLEEAISLQDEME 670


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 176/359 (49%), Gaps = 30/359 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +     K    D    +  R+   G  PD+ TYNILI  FC  GR+     V
Sbjct: 144 PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRV 203

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++L+    P  +T+T LI+    +  I EA  L  ++ + G +PD +TY  ++NG+C+
Sbjct: 204 MDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCK 263

Query: 135 TGHTIVALNLFEEMA--------------------NGNGEFGVV---------CKPDAIT 165
            G    A      ++                     G  E+G           C+P+ IT
Sbjct: 264 EGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPIT 323

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           YST+   LC++G +D+AK +   MK++ + PD  +Y  LI   C     + A     +M+
Sbjct: 324 YSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMI 383

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G  P+++++N I+  LCKNG  DEA  + E + ++G  P+A  YNTL      +G   
Sbjct: 384 SGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKI 443

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML-SKGIRPTVVTYNT 343
           RA  + + M SNG   D  +Y  LI+  C++  ++ A+ L  +M  S+  +PTV++YNT
Sbjct: 444 RALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNT 502



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 157/328 (47%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL          D  + L   + S GL PD YTYN+++N  CK G +   F  
Sbjct: 214 PTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEF 273

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L RI ++       T+  L++ L  E +      L + +   GC+P+  TY+TLI  LCR
Sbjct: 274 LSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCR 333

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A N+ + M            PD  +Y  +   LC+EG VD A E    M     
Sbjct: 334 DGKIDEAKNVLKVMKEK------ALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGH 387

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+++Y S++   C   + +EA  +F ++ + G  PN  ++N +   L  +G    A  
Sbjct: 388 LPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALG 447

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGY 313
           ++  M+  G+ PD   YN+L+   C  G V++A EL V M ES  C   V SY  ++ G 
Sbjct: 448 MILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGL 507

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           CK + I  A+ + + M+++G  P   TY
Sbjct: 508 CKVQRIIDAIEVLAAMVNEGCLPNETTY 535



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 119/254 (46%), Gaps = 7/254 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F   +   C  ++  E+      +   G KPDV   T LI G         A+ + E + 
Sbjct: 80  FMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILE 139

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
                     KPD   Y+ +  G CK   VD A ++  +MK     PDVVTY  LI  FC
Sbjct: 140 KHG-------KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFC 192

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                + A  +  +++    +P V+T+ +++      G +DEA +LL+ M+  G+RPD  
Sbjct: 193 GRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRY 252

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            YN +++G C  G ++RA E    +  NGC+  V +Y IL+       + E    L S+M
Sbjct: 253 TYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDM 312

Query: 330 LSKGIRPTVVTYNT 343
           L KG  P  +TY+T
Sbjct: 313 LVKGCEPNPITYST 326



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 135/275 (49%), Gaps = 7/275 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++NIL   L     ++    L   +   G  P+  TY+ LI   C+ G++     VL 
Sbjct: 286 VSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLK 345

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      PD  ++  LI  LC E ++  A      + + G  PD+ +Y +++  LC+ G
Sbjct: 346 VMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNG 405

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +   ALN+FE++    GE G  C P+A +Y+T+   L   G   +A  + L+M    I+P
Sbjct: 406 NADEALNIFEKL----GEVG--CPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDP 459

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMD-QGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           D +TY SLI   C     ++A  L ++M + +  QP V+++N ++  LCK  ++ +A  +
Sbjct: 460 DEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEV 519

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           L  M+  G  P+ + Y  L+ G    G    A EL
Sbjct: 520 LAAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMEL 554



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 10/252 (3%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
            P P+ +++ L   L ++   D   ++ K +    L PD Y+Y+ LI+  C+ G+V    
Sbjct: 318 EPNPI-TYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAI 376

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
             L  ++     PD +++ S++  LC      EA  +F KL   GC P+  +Y TL   L
Sbjct: 377 EFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGAL 436

Query: 133 CRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-K 190
             +G  I AL +  EM +NG         PD ITY+++   LC++G VD+A EL + M +
Sbjct: 437 WSSGDKIRALGMILEMLSNG-------IDPDEITYNSLISCLCRDGLVDQAIELLVDMFE 489

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            E   P V++Y +++ G C      +A  +   M+++G  PN  T+ +++  +   G   
Sbjct: 490 SEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWRY 549

Query: 251 EASRLLELMIQI 262
           +A  L  L++ +
Sbjct: 550 DAMELANLLVNM 561



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           DQ        F   +N  CK+ K DE+   L+ M+  G +PD  +   L+ GF    ++ 
Sbjct: 70  DQDYDFRDTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIE 129

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +A ++   +E +G   DVF+Y  +I+G+CK   ++ A  +   M  +G  P VVTYN
Sbjct: 130 KAIQVMEILEKHG-KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYN 185


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/374 (31%), Positives = 185/374 (49%), Gaps = 40/374 (10%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C+    +  H   P    +  L   L+K    D  L L + +  +G  PD+ T+N +I  
Sbjct: 230 CLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYG 289

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-------- 113
           FC++ RV  G  ++ R++   FTP+ +T+  L+ GLC   RI EA AL +K+        
Sbjct: 290 FCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHF 349

Query: 114 ----------------RAF--------GCKPDVFTYTTLINGLCRTGHTIVALNLFEEM- 148
                            AF        G  PDVFT++TL+NGLC+ G    AL L  +M 
Sbjct: 350 NTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMD 409

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           A G       CKP+  TY+ + DG CK+G +++A  +  +M  +  + + V Y +LI   
Sbjct: 410 AKG-------CKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISAL 462

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C     +EA  +F EM  +G +P++ TFN ++  LC+  +M++A  L   M+  GV  ++
Sbjct: 463 CKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANS 522

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             +NTL+  F   G +  A +L   M   GC  D  +Y  LI   CK   +E  L L+ E
Sbjct: 523 VTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEE 582

Query: 329 MLSKGIRPTVVTYN 342
           M+ KG+ P+++T N
Sbjct: 583 MIRKGLTPSIITCN 596



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 169/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+ L   L K   + + L L   +++ G  P+L TY ILI+ FCK G++    ++
Sbjct: 380 PDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLI 439

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L   F+ + V + +LI  LC   +I EA  +F ++ + GCKPD+FT+ +LI GLCR
Sbjct: 440 LREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCR 499

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L+ +M       GV+   +++T++T+     + G + +A +L   M     
Sbjct: 500 VDEMEDALALYRDMVLE----GVIA--NSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGC 553

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY  LI+  C      +   LF EM+ +G+ P+++T N+++N  C  GK+  A  
Sbjct: 554 PLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALE 613

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            +  MI  G  PD   YN+L++G C  GR+  A  LF  +++ G   D  +Y  LI   C
Sbjct: 614 FMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLC 673

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +    + A  L    +  G  P  VT+N
Sbjct: 674 REGAFDDACFLLYRGVENGFVPNDVTWN 701



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 164/330 (49%), Gaps = 11/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+N++   L          ++F  + S G+ P+ YT+ +++   C +  V    ++
Sbjct: 173 PSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLL 232

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    P+++ + +LI  L    R+ EA  L  ++   GC PDV T+ T+I G CR
Sbjct: 233 LRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCR 292

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               +    L + M            P+ +TY  +  GLCK   +D+A+ L  K+     
Sbjct: 293 LNRVLEGAKLVDRMILKG------FTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP---- 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKC-LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            P+VV + +L+ GF      NEA   ++ +M++ G  P+V TF+ ++N LCK G    A 
Sbjct: 343 GPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSAL 402

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L+  M   G +P+ + Y  L+DGFC  G++  A  +   M + G   +   Y  LI+  
Sbjct: 403 ELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISAL 462

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK+ +I  AL ++ EM SKG +P + T+N+
Sbjct: 463 CKHGKIHEALDMFGEMSSKGCKPDIFTFNS 492



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 4/185 (2%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C+P   +Y+ + D L        A  +F  M  + ++P+  T+  +++  C  N+ + A 
Sbjct: 171 CEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNAC 230

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M   G  PN + +  +++ L K  ++DEA +LLE M  +G  PD + +NT++ GF
Sbjct: 231 LLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGF 290

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   RV    +L   M   G   +  +YG L++G CK   I+ A +L    LSK   P V
Sbjct: 291 CRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQAL----LSKVPGPNV 346

Query: 339 VTYNT 343
           V +NT
Sbjct: 347 VHFNT 351



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 36/160 (22%)

Query: 220 LFIEMMDQGV------------------------------------QPNVVTFNVIMNEL 243
           L ++M ++G+                                    +P+  ++NV+++ L
Sbjct: 126 LLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVL 185

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
                   AS +   M+  GV P+   +  +M   C+   V+ A  L   M  +GC+ + 
Sbjct: 186 VVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNS 245

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             Y  LI+   K   ++ AL L  EM   G  P V T+NT
Sbjct: 246 MIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNT 285


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 167/327 (51%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L +N+       +   +   GLF ++ TYN +I  +C +G      +V
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L+   + + VT+ ++IKG C       A  +   +R  GCKPD ++YT LI G C+
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 677

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LF EM +       +C P+ +TY+ + DG CK+  +D A  L   MK    
Sbjct: 678 ISKMESAFGLFNEMVDDG-----LC-PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 731

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY  LI G    N+++ A+ L   M+++G+ PNVVT+  +++ LCKNG    A  
Sbjct: 732 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 791

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   MI+ G  P+   Y++L+      G+V  A+ LF  +E +G + D  +Y  +I  Y 
Sbjct: 792 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 851

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
            + ++E A +    M+  G +PT+ TY
Sbjct: 852 MSGKVEHAFNFLGRMIKAGCQPTLWTY 878



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L  +      + LF R++  G+FP+  TYN LIN   +  R+   FVV
Sbjct: 523 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 582

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + R+    + VT+  +IKG C      +A  +   +   G   ++ TY T+I G C 
Sbjct: 583 LNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 642

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+T  AL + + M +G       CKPD  +Y+ +  G CK   ++ A  LF +M D+ +
Sbjct: 643 SGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL 696

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTYT+LI G+C     + A  L   M   G +PNV T+NV+++ L K      A  
Sbjct: 697 CPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEE 756

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L ++MI+ G+ P+   Y  ++DG C  G  + A E+F  M   GC+ ++ +Y  LI    
Sbjct: 757 LCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALG 816

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  ++E A +L++E+   G+ P  +TY
Sbjct: 817 QEGKVEEAENLFAELERHGLIPDEITY 843



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 167/342 (48%), Gaps = 41/342 (11%)

Query: 35  TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94
            V+  + R+ S G+ P+L  YN +IN  CK G V+    ++ ++  S  +PD  T+TS+I
Sbjct: 368 AVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMI 427

Query: 95  KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            G C +  +  A  +F ++   GC+P+  TY+TLINGLC +G    A +L  EM      
Sbjct: 428 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI----L 483

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
            G++  P A T +     LC  G  + A  LF+ MK++   P+V TYT+LI G C +   
Sbjct: 484 HGIL--PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLL 541

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL---------------- 258
             A  LF  M   GV PN VT+N ++N L +N ++  A  +L L                
Sbjct: 542 KVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEM 601

Query: 259 -------------------MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
                              M+Q G   +   YNT++ G+C +G    A  +   M   GC
Sbjct: 602 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGC 661

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             D +SY  LI G+CK  ++E A  L++EM+  G+ P  VTY
Sbjct: 662 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 703



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 165/313 (52%), Gaps = 7/313 (2%)

Query: 31  KH-YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
           KH  D+ L +F ++   G  P+  TY+ LIN  C  GRV+  F ++  ++     P A T
Sbjct: 433 KHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHT 492

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
            T  I  LC      +A  LF  ++  GC+P+V+TYT LI+GLC +G   VA+ LF  M+
Sbjct: 493 CTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMS 552

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
             +G F     P+ +TY+ + + L +   +  A  +   M    +  ++VTY  +I+G+C
Sbjct: 553 R-DGVF-----PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYC 606

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
              D  +A  +   M+ +G   N+VT+N I+   C +G    A R+L+LM   G +PD  
Sbjct: 607 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEW 666

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y  L+ GFC   ++  A  LF  M  +G   +  +Y  LI+GYCK+++++ A SL   M
Sbjct: 667 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 726

Query: 330 LSKGIRPTVVTYN 342
              G RP V TYN
Sbjct: 727 KRSGCRPNVQTYN 739



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 151/311 (48%), Gaps = 6/311 (1%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           Y+    LF  + + G  P++YTY  LI+  C  G +     +  R+ R    P+ VT+ +
Sbjct: 506 YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 565

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LI  L    RI  A  +   +   G   ++ TY  +I G C  G    A+ +   M    
Sbjct: 566 LINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 625

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
               +V      TY+TI  G C  G    A  +   M+D    PD  +YT LI GFC  +
Sbjct: 626 HSANLV------TYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKIS 679

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
               A  LF EM+D G+ PN VT+  +++  CK+ K+D A+ LLE M + G RP+   YN
Sbjct: 680 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 739

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+ G       + A+EL   M   G   +V +Y  +I+G CKN     AL ++++M+ +
Sbjct: 740 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 799

Query: 333 GIRPTVVTYNT 343
           G  P ++TY++
Sbjct: 800 GCLPNLLTYSS 810



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 133/251 (52%), Gaps = 6/251 (2%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           LIK   ++  +    +    L   G +  +F Y+ L+  L R G T   ++ +  M +  
Sbjct: 321 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE- 379

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
              GV  +P+ + Y+ + + LCK+G V  A+ +  K+ +  ++PD  TYTS+I G C  +
Sbjct: 380 ---GV--QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKH 434

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           D + A  +F +M  +G +PN VT++ ++N LC +G+++EA  L+  MI  G+ P A    
Sbjct: 435 DLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCT 494

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
             +   C  G    A  LFV M++ GC  +V++Y  LI+G C +  ++ A+ L+  M   
Sbjct: 495 GPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRD 554

Query: 333 GIRPTVVTYNT 343
           G+ P  VTYN 
Sbjct: 555 GVFPNTVTYNA 565



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 30/343 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  L     K    ++   LF  +   GL P+  TY  LI+ +CK  ++     +
Sbjct: 663 PDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSL 722

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + RS   P+  T+  LI GL  ++    A  L   +   G  P+V TYT +I+GLC+
Sbjct: 723 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 782

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T +AL +F +M          C P+ +TYS++   L +EG V++A+ LF +++   +
Sbjct: 783 NGSTSLALEMFNKMIEQG------CLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGL 836

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL----------- 243
            PD +TY  +I  +  +     A      M+  G QP + T+ V++  L           
Sbjct: 837 IPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRL 896

Query: 244 ---------CKNG----KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
                    C  G      D  S +   + ++       V N L+      GR   A EL
Sbjct: 897 AALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANEL 956

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
             SM S G   D  +Y  L+    + + ++ A+ ++  M ++G
Sbjct: 957 LGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG 999



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 148/351 (42%), Gaps = 34/351 (9%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P   ++  L     K++  DT  SL + +   G  P++ TYN+LI+   K    S    +
Sbjct: 698  PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 757

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               ++     P+ VT+T++I GLC       A  +F K+   GC P++ TY++LI  L +
Sbjct: 758  CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQ 817

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G    A NLF E+       G++  PD ITY  + +     G V+ A     +M     
Sbjct: 818  EGKVEEAENLFAELE----RHGLI--PDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 871

Query: 195  NPDVVTYTSLIRG-----------------------FCYANDWNEAKCLF---IEMMDQG 228
             P + TY  LI+G                       F Y     +A  +    +  +D G
Sbjct: 872  QPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPG 931

Query: 229  VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
            +  +V   N +++ L   G+  EA+ LL  MI  G+ PD   YN+L+        V+ A 
Sbjct: 932  L--SVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAM 989

Query: 289  ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             +F  M + GC   +  Y  LI   C+    + A   +  ML +   P  V
Sbjct: 990  GVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDV 1040



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 134/356 (37%), Gaps = 53/356 (14%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V ++N+L   L K  ++     L K +   G+FP++ TY  +I+  CK G  S    +
Sbjct: 733  PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 792

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++     P+ +T++SLI+ L  E ++ EA  LF +L   G  PD  TY  +I     
Sbjct: 793  FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 852

Query: 135  TGHTIVALNLFEEMANGNGE-----FGVVCK----------------PDAIT-----YST 168
            +G    A N    M     +     +GV+ K                PD +      Y T
Sbjct: 853  SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQT 912

Query: 169  ---------------------------ITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
                                       +   L   G   +A EL   M  + + PD   Y
Sbjct: 913  TDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAY 972

Query: 202  TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
             SL+       + + A  +F  M  QG + ++  +  ++  LC+  +  EA    E M+ 
Sbjct: 973  NSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM 1032

Query: 262  IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
                PD  V   L+DG    G  +   E    ME+   M     Y IL     K +
Sbjct: 1033 RTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAREASKKR 1088



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 75/206 (36%), Gaps = 12/206 (5%)

Query: 1    FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            + + D  L   P   P CSF        +    D V  +  +L  +     +   N L++
Sbjct: 889  YLLADQRLAALPDVVPNCSFGY------QTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 942

Query: 61   CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
                 GR      +LG ++     PD   + SL+  L     +  A  +F  +   GC+ 
Sbjct: 943  NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 1002

Query: 121  DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
             +  Y  LI  LC+      A   FE M            PD +  + + DGL ++G+ D
Sbjct: 1003 HLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLRDGYKD 1056

Query: 181  KAKELFLKMKDENINPDVVTYTSLIR 206
               E    M+     P    YT L R
Sbjct: 1057 LCMEFLHIMETRRYMPSFHIYTILAR 1082


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 169/358 (47%), Gaps = 35/358 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NIL    ++    D  L LFK L+S G  P+  TY  +I       R+      
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               L      D +++T++IKGL    RI EA  LF KL+  GC P+V  YT +I+GL +
Sbjct: 357 FDEAL------DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLK 410

Query: 135 TGHTIVALNLFEEMANGN-----GEFGVV------------------------CKPDAIT 165
            G     L  FE+M+  +       + VV                        C PD IT
Sbjct: 411 AGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTIT 470

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+ DG  K   +D+A++L   M  +   P  VTY S++ GFC  +  NEAK +  +M 
Sbjct: 471 YTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMR 530

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++G +P +  F  +++     G+ +EA ++L  M   G  PD  +Y +L+D    TGRV 
Sbjct: 531 ERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVP 590

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A+ +F SM   GC  D  +YG +I  + K   +E A  +   M   G+ P    YN+
Sbjct: 591 EARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNS 648



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 163/326 (50%), Gaps = 6/326 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S+  +   LA +K  D    LF++L + G  P++  Y  +I+   K GR+  G     
Sbjct: 363 VISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFE 422

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +  S   P   T+T +I GLC    + +A  +F ++   GC PD  TYTTLI+G  +  
Sbjct: 423 DMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKAS 482

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L + M     E      P A+TY +I  G CK   +++AKE+  +M++    P
Sbjct: 483 KMDEARKLLDVMLTKGPE------PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEP 536

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            +  +TSL+  +       EA  +  EM  +G  P+V+ +  +++ L   G++ EA  + 
Sbjct: 537 GLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVF 596

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + MI+ G  PDA  Y T++  F   G V  A E+   M  +G   D F+Y  L++GY K 
Sbjct: 597 DSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKL 656

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
           + ++ A  +Y  M++ GI+P  VT+N
Sbjct: 657 ERVDQAFGVYDRMVASGIKPNAVTFN 682



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 173/343 (50%), Gaps = 11/343 (3%)

Query: 4   FDYMLRMHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            D +  MH +   P V + NI+   L K +  D  + LF  + S+G  P + +YN +I+ 
Sbjct: 5   LDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISG 64

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK-LRAFGCKP 120
              + ++   +     ++ +   PD + FT+LI G C   +      L  + L+ F  +P
Sbjct: 65  LASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF--RP 122

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DVF YT++I+G C+ G       + EEM          C PDA  Y  + D LCK G VD
Sbjct: 123 DVFLYTSVIHGYCKAGDLDTGFKILEEM------LAAGCIPDAAAYFVLIDPLCKLGRVD 176

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A ELF +M+      D VT+ +LI         +EA  L+ EM+++G +P +   + ++
Sbjct: 177 EAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLI 236

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LCK GK+DEA+ + + ++   V      YN+LMDG+C  GRV+   +L + M      
Sbjct: 237 FALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNF 296

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D+ +Y IL+ G+ +   ++ AL L+  + S G +P   TY T
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTT 339



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 155/330 (46%), Gaps = 7/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L    +K    D    L   + + G  P   TY  +++ FCK+  ++    V
Sbjct: 466 PDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEV 525

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      P    FTSL+    ++ R  EA  + T++ A GC PDV  YT+LI+ L  
Sbjct: 526 IAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFS 585

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    A ++F+ M          C PDA+TY TI     K G V+ A E+   M    +
Sbjct: 586 TGRVPEARHVFDSMIEKG------CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGV 639

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   Y SL+ G+      ++A  ++  M+  G++PN VTFNV+M+ L K+GK D A  
Sbjct: 640 GPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFS 699

Query: 255 LLELMIQIG-VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           L + M++   V P    Y  L+DG    GRV+ A   F  M   G + +  +Y  LI   
Sbjct: 700 LFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSL 759

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K   I  A  L  +M+  G+ P V  Y+ 
Sbjct: 760 AKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 789



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 161/342 (47%), Gaps = 33/342 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML   P P  V   +I+ G   K    +    +  ++   G  P L+ +  L++ +
Sbjct: 490 LLDVMLTKGPEPTAVTYGSIVHG-FCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 548

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              GR    + VL  +      PD + +TSLI  L +  R+ EA  +F  +   GC PD 
Sbjct: 549 LSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 608

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANG----------------------NGEFGVV-- 158
            TY T+I    + G+   A  + E MA                        +  FGV   
Sbjct: 609 LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDR 668

Query: 159 -----CKPDAITYSTITDGLCKEGFVDKAKELFLKM--KDENINPDVVTYTSLIRGFCYA 211
                 KP+A+T++ +  GL K+G  D+A  LF +M  KDE + P +V+YT LI G   A
Sbjct: 669 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDE-VPPTLVSYTILIDGLGKA 727

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
              +EA   F EM+D+G+ P   T+  ++  L K G++ EA +L+E M+++GV PD   Y
Sbjct: 728 GRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAY 787

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           + L+ G   +  V+ A ++F  M   GC  +  +Y +L  G+
Sbjct: 788 SALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 829



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 147/322 (45%), Gaps = 35/322 (10%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD++ Y  +I+ +CK G +  GF +L  +L +   PDA  +  LI  LC   R+ EA  L
Sbjct: 122 PDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYEL 181

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE--------------- 154
           F ++R  GC  D  T+ TLI  L   G    A  L+ EM     E               
Sbjct: 182 FERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCK 241

Query: 155 -----------FGVVCKPDA---ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
                        VV K  A   + Y+++ DG CK G VD   +L L+M + +  PD+ T
Sbjct: 242 AGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQT 301

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  L+ GF  AN  ++A  LF  +   G +PN  T+  I+  L    +M+EA    +  +
Sbjct: 302 YNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEAL 361

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
                 D   Y T++ G   + R++ A ELF  +++ GC  +V +Y  +I+G  K   IE
Sbjct: 362 ------DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIE 415

Query: 321 GALSLYSEMLSKGIRPTVVTYN 342
             L  + +M      PT  TY 
Sbjct: 416 DGLKNFEDMSGSSCVPTRTTYT 437



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 7/232 (3%)

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           EA     ++   G  PDV     ++NGLC+      A+ LF EM +      + C+P  +
Sbjct: 3   EALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPS------MGCEPTIV 56

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           +Y+T+  GL     +D+A + F  M D    PDV+ +T+LI GFC A        L  + 
Sbjct: 57  SYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQA 116

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + +  +P+V  +  +++  CK G +D   ++LE M+  G  PDA+ Y  L+D  C  GRV
Sbjct: 117 LKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRV 175

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           + A ELF  M  +GC+ D  ++  LI     + +++ A  LY EM+ +G  P
Sbjct: 176 DEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEP 227



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 5/270 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  L   L           +F  +   G  PD  TY  +I  F K+G V     +
Sbjct: 571 PDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEI 630

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +S   PD   + SL+ G     R+ +A  ++ ++ A G KP+  T+  L++GL +
Sbjct: 631 LELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFK 690

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A +LF+EM   +        P  ++Y+ + DGL K G V +A   F +M D  I
Sbjct: 691 DGKTDRAFSLFKEMLEKDE-----VPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGI 745

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TYTSLI     A    EAK L  +M+  GV P+V  ++ ++  L  +  +D A  
Sbjct: 746 IPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWD 805

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + + M++ G  P+   Y  L  GF   GR 
Sbjct: 806 VFQEMMKRGCAPNEVTYKVLRRGFRAAGRA 835



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 1/163 (0%)

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +++A +   +M    + PDVV    ++ G C A   ++A  LF+EM   G +P +V++N 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ L    KMDEA +    MI  G  PD   + TL+ GFC  G+  +   + ++     
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQ-PQVGHMLLNQALKR 119

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              DVF Y  +I+GYCK  +++    +  EML+ G  P    Y
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAY 162



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 62/139 (44%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ML     PP + S+ IL   L K        S F+ +   G+ P+ +TY  LI 
Sbjct: 698 FSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIY 757

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K GR+     ++  +++    PD   +++LI GL   S +  A  +F ++   GC P
Sbjct: 758 SLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAP 817

Query: 121 DVFTYTTLINGLCRTGHTI 139
           +  TY  L  G    G  +
Sbjct: 818 NEVTYKVLRRGFRAAGRAL 836



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%)

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           M+EA   L+ M   G+ PD    N +++G C   ++++A ELF+ M S GC   + SY  
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +I+G     +++ A   ++ M+  G  P V+ + T
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTT 95


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 173/358 (48%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K         L   + +  L PDL +YN LI  + ++G +   F++
Sbjct: 305 PTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLL 364

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P  VT+ +LI GLC    +  A  L  ++   G  PDVFT+TT + G C+
Sbjct: 365 FAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCK 424

Query: 135 TGHTIVALNLFEEMAN---------------GNGEFGVVCK--------------PDAIT 165
            G+  +A  LF+EM N               G  + G   K              PD IT
Sbjct: 425 MGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLIT 484

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+   DGL K G + +A EL  KM    + PD VTYTS+I     A    +A+ LF+EM+
Sbjct: 485 YNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEML 544

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            +G+ P+VVT+ V+++     G++  A      M + GV P+   YN L++G C   +++
Sbjct: 545 SKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMD 604

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +A   F  M++ G   + ++Y ILIN  C     + AL LY +ML + I+P   T+ +
Sbjct: 605 QAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRS 662



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 166/315 (52%), Gaps = 6/315 (1%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           ++ + D    ++  +   G+ P + TYN +++ FCK G V     +L ++     +P+ V
Sbjct: 179 RDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDV 238

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           T+  L+ GL     + +A  L   +   G +  V+TY  LI G C  G    A  L EEM
Sbjct: 239 TYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEM 298

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
            +     G V  P  +TY+TI  GLCK G V  A++L   M ++N+ PD+V+Y +LI G+
Sbjct: 299 LSR----GAV--PTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGY 352

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
               +  EA  LF E+  + + P+VVT+N +++ LC+ G +D A RL + MI+ G  PD 
Sbjct: 353 TRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDV 412

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             + T + GFC  G +  AKELF  M + G   D F+Y   I G  K  +   A  +  E
Sbjct: 413 FTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEE 472

Query: 329 MLSKGIRPTVVTYNT 343
           ML++G  P ++TYN 
Sbjct: 473 MLARGFPPDLITYNV 487



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 159/343 (46%), Gaps = 12/343 (3%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            I D + R        C    +     +N   D V S    + S+ L  DL     L+  
Sbjct: 86  VILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKLILDL-----LLWI 140

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC-AESRIMEAAALFTKLRAFGCKP 120
           + K   +    +V  +++     PD      +++ L   ++ I  A  ++  +   G  P
Sbjct: 141 YVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICP 200

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            V TY T+++  C+ G    AL L  +M        + C P+ +TY+ + +GL   G ++
Sbjct: 201 TVVTYNTMLDSFCKKGMVQEALQLLFQMQ------AMGCSPNDVTYNVLVNGLSHSGEME 254

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AKEL   M    +   V TY  LIRG+C      EA  L  EM+ +G  P VVT+N IM
Sbjct: 255 QAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIM 314

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LCK G++ +A +LL++M+   + PD   YNTL+ G+   G +  A  LF  +      
Sbjct: 315 YGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLA 374

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             V +Y  LI+G C+  +++ A+ L  EM+  G  P V T+ T
Sbjct: 375 PSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTT 417



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 143/313 (45%), Gaps = 6/313 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR     P V ++N L   L +    D  + L   +   G  PD++T+   +  FCKMG 
Sbjct: 368 LRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGN 427

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +   +L     PD   + + I G        +A  +  ++ A G  PD+ TY  
Sbjct: 428 LPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNV 487

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
            I+GL + G+   A  L ++M       G+V  PD +TY++I       G + KA+ LFL
Sbjct: 488 FIDGLHKLGNLKEASELVKKMLYN----GLV--PDHVTYTSIIHAHLMAGHLRKARALFL 541

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M  + I P VVTYT LI  +        A   F EM ++GV PNV+T+N ++N LCK  
Sbjct: 542 EMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVR 601

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           KMD+A      M   G+ P+   Y  L++  C  G    A  L+  M       D  ++ 
Sbjct: 602 KMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHR 661

Query: 308 ILINGYCKNKEIE 320
            L+    K+ ++ 
Sbjct: 662 SLLKHLNKDYKLH 674



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 155/305 (50%), Gaps = 20/305 (6%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILR--------------SCFTPDAVTFTSLIKGLCA 99
           +Y+++++   + G +   + V+ +++                   P       L+  +  
Sbjct: 83  SYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKLILDLLLWIYV 142

Query: 100 ESRIMEAAAL-FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
           +  ++E   L F K+ + G  PDV     ++  L    + I   ++  E+ N   E G+ 
Sbjct: 143 KKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNI---DVAREVYNVMVECGIC 199

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
             P  +TY+T+ D  CK+G V +A +L  +M+    +P+ VTY  L+ G  ++ +  +AK
Sbjct: 200 --PTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAK 257

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M+  G++ +V T++ ++   C+ G+++EASRL E M+  G  P    YNT+M G 
Sbjct: 258 ELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGL 317

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  GRV+ A++L   M +   M D+ SY  LI GY +   I  A  L++E+  + + P+V
Sbjct: 318 CKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSV 377

Query: 339 VTYNT 343
           VTYNT
Sbjct: 378 VTYNT 382



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 129/271 (47%), Gaps = 7/271 (2%)

Query: 5   DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           D M++ H   P V +F        K  +      LF  + + GL PD + Y   I    K
Sbjct: 401 DEMIK-HGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELK 459

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
           +G  S  F +   +L   F PD +T+   I GL     + EA+ L  K+   G  PD  T
Sbjct: 460 LGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVT 519

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           YT++I+     GH   A  LF EM +  G F     P  +TY+ +       G +  A  
Sbjct: 520 YTSIIHAHLMAGHLRKARALFLEMLS-KGIF-----PSVVTYTVLIHSYAVRGRLKLAIL 573

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
            F +M ++ ++P+V+TY +LI G C     ++A   F EM  +G+ PN  T+ +++NE C
Sbjct: 574 HFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENC 633

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
             G   EA RL + M+   ++PD+  + +L+
Sbjct: 634 NLGHWQEALRLYKDMLDREIQPDSCTHRSLL 664



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 116/217 (53%), Gaps = 7/217 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PDL TYN+ I+   K+G +     ++ ++L +   PD VT+TS+I        + +A
Sbjct: 477 GFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKA 536

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
            ALF ++ + G  P V TYT LI+     G   +A+  F EM     E GV   P+ ITY
Sbjct: 537 RALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMH----EKGV--HPNVITY 590

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + + +GLCK   +D+A   F +M+ + I+P+  TYT LI   C    W EA  L+ +M+D
Sbjct: 591 NALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLD 650

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           + +QP+  T   ++  L K+ K+    R LE +I  G
Sbjct: 651 REIQPDSCTHRSLLKHLNKDYKL-HVVRHLENVIAAG 686



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 16/243 (6%)

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT--- 170
           R  G K    +Y+ +++ L R G    A  + E++ +   E GV+   D ++ S ++   
Sbjct: 73  RQTGFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVI---DVVSSSEVSMPS 129

Query: 171 -----DGL----CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC-YANDWNEAKCL 220
                D L     K+  ++K   +F KM  + + PDV     ++R      N+ + A+ +
Sbjct: 130 VKLILDLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREV 189

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           +  M++ G+ P VVT+N +++  CK G + EA +LL  M  +G  P+   YN L++G   
Sbjct: 190 YNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSH 249

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +G + +AKEL   M   G    V++Y  LI GYC+  +IE A  L  EMLS+G  PTVVT
Sbjct: 250 SGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVT 309

Query: 341 YNT 343
           YNT
Sbjct: 310 YNT 312



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 59/137 (43%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L    A        +  F  ++  G+ P++ TYN LIN  CK+ ++   +  
Sbjct: 550 PSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNF 609

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P+  T+T LI   C      EA  L+  +     +PD  T+ +L+  L +
Sbjct: 610 FAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNK 669

Query: 135 TGHTIVALNLFEEMANG 151
                V  +L   +A G
Sbjct: 670 DYKLHVVRHLENVIAAG 686


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 168/327 (51%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++ +L    +++   +    LF  +   G+ PD+Y Y  +IN  CK G +   FV+  
Sbjct: 258 VTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFD 317

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P+A T+ +LI G C    +  A  +   +++ G   +   + TL++G C+ G
Sbjct: 318 EMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKG 377

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL L   M     E       DA T + I  G C+    ++AK L L M++  + P
Sbjct: 378 MIDEALRLQNIMQQKGFEI------DAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAP 431

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +VV+++ LI  +C   ++ EA+ LF  M  +G  P+VVT+N  +   CK GKM+EA +L+
Sbjct: 432 NVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLI 491

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M + G+ PD   Y +L+DG   +G V+RA ELF  M   G  R+V +Y ++I+G  K+
Sbjct: 492 NEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKD 551

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
              + A  LY EM  +GI P    Y++
Sbjct: 552 GRADEAFKLYDEMNKEGIVPDDGIYSS 578



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 161/341 (47%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FDY  +          F  L   L ++ + +  +   +++   G+   + ++  +++  
Sbjct: 140 VFDYARKKGFEIDERSCFEFLLA-LKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGL 198

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G V     ++  ++   F P  +T+ +L+ G      +     + + +       +V
Sbjct: 199 CKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNV 258

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LI    R+     A  LF+EM     E      PD   Y++I +  CK G + +A
Sbjct: 259 TTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIE------PDVYIYTSIINWNCKFGNMKRA 312

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M +  + P+  TY +LI G C A +   A+ +  +M  +GV  N V FN +M+ 
Sbjct: 313 FVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDG 372

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G +DEA RL  +M Q G   DA   N +  GFC + R   AK L ++ME  G   +
Sbjct: 373 YCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPN 432

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V S+ ILI+ YCK +    A  L+  M  KG  P+VVTYN 
Sbjct: 433 VVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNA 473



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 142/318 (44%), Gaps = 17/318 (5%)

Query: 3   IFDYMLRMHPSPP-----PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNI 57
           +FD ML+    P       + ++N  FG + +         LF  +    L P+ YTY  
Sbjct: 280 LFDEMLKKGIEPDVYIYTSIINWNCKFGNMKR------AFVLFDEMTERRLVPNAYTYGA 333

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           LIN  CK G +    +++  +       + V F +L+ G C +  I EA  L   ++  G
Sbjct: 334 LINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKG 393

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
            + D FT   + +G CR+     A  L   M     E GV   P+ +++S + D  CKE 
Sbjct: 394 FEIDAFTCNIIASGFCRSNRREEAKRLLLTME----ERGVA--PNVVSFSILIDIYCKEQ 447

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
              +A+ LF  M+ +   P VVTY + I  +C      EA  L  EM ++G+ P+  T+ 
Sbjct: 448 NFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYT 507

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +++    +G +D A  L   M Q+G+  +   Y  ++ G    GR + A +L+  M   
Sbjct: 508 SLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKE 567

Query: 298 GCMRDVFSYGILINGYCK 315
           G + D   Y  LI    K
Sbjct: 568 GIVPDDGIYSSLIASLHK 585



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 164/343 (47%), Gaps = 28/343 (8%)

Query: 4   FDYMLRMHPS-PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           FD+ LR +PS  P + +  ILF  L + + +  + ++ K + + G            N +
Sbjct: 51  FDF-LRQNPSRKPDLPAHLILFSRLYRARKFAEMKNVLKFIVNDG------------NLW 97

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAV-TFTSLIKGLCAESRIMEAA-ALFTKLRAFGCKP 120
             + R+      +  I      P  V  F  ++  +  ++R+ +++  +F   R  G + 
Sbjct: 98  SNVERI------VSSIGGEFNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEI 151

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  +    +  L R+G+  + +    +M +   E  V       +++ + DGLCK+G V 
Sbjct: 152 DERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVC------SWTAVVDGLCKKGEVV 205

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AK L  ++  +   P V+TY +L+ G+    D      +   M    V  NV T+ +++
Sbjct: 206 RAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLI 265

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
               ++ K++EA +L + M++ G+ PD  +Y ++++  C  G + RA  LF  M     +
Sbjct: 266 EWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLV 325

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + ++YG LING CK  E++ A  + ++M SKG+    V +NT
Sbjct: 326 PNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNT 368



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 105/230 (45%), Gaps = 6/230 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN L     K    D  L L   +   G   D +T NI+ + FC+  R      +L  + 
Sbjct: 366 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 425

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ V+F+ LI   C E    EA  LF  +   G  P V TY   I   C+ G   
Sbjct: 426 ERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 485

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L  EM     E G++  PD  TY+++ DG    G VD+A ELF +M    +N +VV
Sbjct: 486 EAYKLINEMQ----ERGLM--PDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVV 539

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           TYT +I G       +EA  L+ EM  +G+ P+   ++ ++  L K G +
Sbjct: 540 TYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPL 589



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 54/128 (42%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N       K    +    L   +   GL PD YTY  LI+     G V     +
Sbjct: 466 PSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALEL 525

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +     + VT+T +I GL  + R  EA  L+ ++   G  PD   Y++LI  L +
Sbjct: 526 FNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 585

Query: 135 TGHTIVAL 142
            G  +  L
Sbjct: 586 VGPLVSGL 593


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 172/329 (52%), Gaps = 8/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N++ G L K K       LF  +    + P+  TYN LI+ +CK+G++   F +
Sbjct: 215 PGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNI 274

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+      P  +TF SL+ GLC    + EA  +  ++  +G  PD FTYTTL +G  +
Sbjct: 275 RERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLK 334

Query: 135 TGHTIVALNLFEE-MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G+   ++ L EE +  G       C       S + + LCKEG ++KA+E+  K  +  
Sbjct: 335 CGNVDASITLSEEAVRKGVQILDYTC-------SILLNALCKEGNMEKAEEVLKKFLENG 387

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P  V + +++ G+C   D N+A     +M   G++PN VT+N ++ + C+   M+EA 
Sbjct: 388 LAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAE 447

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           + ++ M++ GV P+   YNTL+DG+  +   +R  ++   ME  G   +V SYG LIN  
Sbjct: 448 KCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCL 507

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK+  I  A  +  +M+ +G+ P    YN
Sbjct: 508 CKDANILEAEVILGDMVHRGVVPNAQIYN 536



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S N+    L   K Y+  L LF  +   GL PD + Y   I    K+G +     +
Sbjct: 145 PSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIEL 204

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + R   +P    +  +I GLC E R+ +A  LF ++      P+  TY TLI+G C+
Sbjct: 205 MTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCK 264

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A N+ E M   N E      P  IT++++ +GLC+   +++A+ +  +M+    
Sbjct: 265 VGQLEEAFNIRERMKVENVE------PTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGF 318

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TYT+L  G     + + +  L  E + +GVQ    T ++++N LCK G M++A  
Sbjct: 319 VPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEE 378

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+  ++ G+ P    +NT+++G+C  G +N+A      ME+ G   +  +Y  L+  +C
Sbjct: 379 VLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFC 438

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + K +E A     +M+ KG+ P V TYNT
Sbjct: 439 EMKNMEEAEKCIKKMVEKGVLPNVETYNT 467



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 159/324 (49%), Gaps = 7/324 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     ++  +D    + + +   GL P++ +Y  LINC CK   +    V+
Sbjct: 460 PNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVI 519

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG ++     P+A  +  LI G C   ++ +A   F ++ A    P + TY  LINGLC+
Sbjct: 520 LGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCK 579

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A NL  E+      F      D ITY+++  G    G V KA EL+  MK   I
Sbjct: 580 KGKVMEAENLASEITRKGLSF------DVITYNSLISGYSSAGNVQKALELYETMKKSGI 633

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P + TY  LI G C        + ++ EM+   + P+ V +N +++   ++G + +A  
Sbjct: 634 KPTLNTYHRLIAG-CGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACS 692

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M   G++PD   YN L+ G    GR+++ K L   M+  G +    +Y ILI G+C
Sbjct: 693 LHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHC 752

Query: 315 KNKEIEGALSLYSEMLSKGIRPTV 338
           K K+ +GA   Y EM   G  P+V
Sbjct: 753 KLKDFDGAYVWYREMFENGFTPSV 776



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 158/323 (48%), Gaps = 7/323 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +IL   L K  + +    + K+    GL P    +N ++N +C++G ++  +  + ++  
Sbjct: 361 SILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEA 420

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P+ VT+ SL+K  C    + EA     K+   G  P+V TY TLI+G  R+     
Sbjct: 421 VGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDR 480

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
              + EEM           KP+ I+Y  + + LCK+  + +A+ +   M    + P+   
Sbjct: 481 CFQILEEMEKKG------LKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQI 534

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  LI G C A    +A   F EM+ + + P +VT+N+++N LCK GK+ EA  L   + 
Sbjct: 535 YNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEIT 594

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + G+  D   YN+L+ G+   G V +A EL+ +M+ +G    + +Y  LI G C  + + 
Sbjct: 595 RKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAG-CGKEGLV 653

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
               +Y EML   + P  V YN 
Sbjct: 654 LVEKIYQEMLQMNLVPDRVIYNA 676



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 162/328 (49%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     + K+ +      K++   G+ P++ TYN LI+ + +       F +
Sbjct: 425 PNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQI 484

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    P+ +++  LI  LC ++ I+EA  +   +   G  P+   Y  LI+G C 
Sbjct: 485 LEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCI 544

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A   F+EM            P  +TY+ + +GLCK+G V +A+ L  ++  + +
Sbjct: 545 AGKLKDAFRFFDEMVARE------IVPTLVTYNILINGLCKKGKVMEAENLASEITRKGL 598

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + DV+TY SLI G+  A +  +A  L+  M   G++P + T++ ++    K G +    +
Sbjct: 599 SFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEG-LVLVEK 657

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M+Q+ + PD  +YN L+  +   G V +A  L  +ME+ G   D  +Y  LI G+ 
Sbjct: 658 IYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHF 717

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +    +L ++M  +G+ P   TY+
Sbjct: 718 KEGRMHKVKNLVNDMKIRGLIPKTETYD 745



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 128/253 (50%), Gaps = 7/253 (2%)

Query: 84  TPDAVTFTSLIKGLCAESRIM-EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           TP    F+ ++  +C+ES+++ E+A L+  ++  G  P V +    +  L  T      L
Sbjct: 108 TPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTL 167

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            LF E+     E G+  +PD   Y        K G + +A EL   MK   ++P V  Y 
Sbjct: 168 QLFSEIV----ESGL--RPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYN 221

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
            +I G C      +A+ LF EM+D+ V PN +T+N +++  CK G+++EA  + E M   
Sbjct: 222 VVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVE 281

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
            V P    +N+L++G C    +  A+ +   ME  G + D F+Y  L +G+ K   ++ +
Sbjct: 282 NVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDAS 341

Query: 323 LSLYSEMLSKGIR 335
           ++L  E + KG++
Sbjct: 342 ITLSEEAVRKGVQ 354



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 1/190 (0%)

Query: 155 FGVVCKPDAITYSTITDGLCKEG-FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           F +   P    +S +   +C E   V ++ EL++ MK + + P V +    +        
Sbjct: 103 FSLSSTPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKR 162

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +   LF E+++ G++P+   +   +    K G +  A  L+  M + GV P   VYN 
Sbjct: 163 YEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNV 222

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++ G C   R+  A++LF  M       +  +Y  LI+GYCK  ++E A ++   M  + 
Sbjct: 223 VIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVEN 282

Query: 334 IRPTVVTYNT 343
           + PT++T+N+
Sbjct: 283 VEPTIITFNS 292


>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
          Length = 595

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 160/333 (48%), Gaps = 8/333 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSPGF 72
           P V ++ IL   L K+ H    L +  R++S G  + PD+   N +++  CK+GR+    
Sbjct: 164 PDVVTYGILLNGLCKSGHVGDALKVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQAI 223

Query: 73  VVLGRILRSCF--TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
           + +   +R      P+AVT+  L    C    I  A  +  ++   G  P+V T  T+I 
Sbjct: 224 IFVDERMRHVHGCAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIG 283

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GLCR G    AL  F E      E     + +A+TYST+         VD A ELF +M 
Sbjct: 284 GLCRVGRVGAALEFFREKRTVWPE----ARGNAVTYSTLASAFLHCNNVDMAMELFHEMA 339

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           D    PD V Y ++I G   A    +A      M   G + +   +N+++   C+  K+ 
Sbjct: 340 DHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLH 399

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA  LLE M  +G++PD   YNTL+ G C  G  +   EL   M  +GC   V ++G L+
Sbjct: 400 EAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLV 459

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +GYCK  + + AL ++  M    I+P  V YNT
Sbjct: 460 HGYCKAGKTDEALRIFRSMDEARIQPNTVIYNT 492



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 138/300 (46%), Gaps = 45/300 (15%)

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
            PD   F SL+  L     +     LFT +R    KPDV TY  L+NGLC++GH   AL 
Sbjct: 128 APDISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALK 187

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN---PDVVT 200
           + + M++   +   VC PD    +T+ DGLCK G + +A  +F+  +  +++   P+ VT
Sbjct: 188 VLDRMSSPGSD---VC-PDIAILNTVVDGLCKIGRLQQAI-IFVDERMRHVHGCAPNAVT 242

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK------------ 248
           Y  L   FC   D   A  +   M  +GV PNV+T N I+  LC+ G+            
Sbjct: 243 YNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEFFREKR 302

Query: 249 -------------------------MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
                                    +D A  L   M   G RPDA +Y T++ G    GR
Sbjct: 303 TVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGR 362

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  A     SM+  G   D  +Y ILI G+C+ K++  A  L  EM   G++P V TYNT
Sbjct: 363 LLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNT 422



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 140/310 (45%), Gaps = 12/310 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL----YTYNILINCFCKMGRVSP 70
           P V + N + G L +       L  F+   ++  +P+      TY+ L + F     V  
Sbjct: 273 PNVITMNTIIGGLCRVGRVGAALEFFREKRTV--WPEARGNAVTYSTLASAFLHCNNVDM 330

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   +      PDAV + ++I GL    R+++A      ++  G K D   Y  LI 
Sbjct: 331 AMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIG 390

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G CR      A  L EEM       GV  +PD  TY+T+  GLCK G      EL   M 
Sbjct: 391 GFCRKKKLHEAYELLEEMK------GVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMI 444

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           D+   P VVT+ +L+ G+C A   +EA  +F  M +  +QPN V +N +++ LCK+ ++D
Sbjct: 445 DDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVD 504

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            A +L + M +  V  + + YN L+ G        +A EL   M    C  +  +  +L+
Sbjct: 505 VAIKLFDEMREKNVPANVTTYNALLKGLQDKKMAEKAFELMDRMREERCTPNYVTVDVLM 564

Query: 311 NGYCKNKEIE 320
               +  E E
Sbjct: 565 EWLPEIGETE 574



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 120/255 (47%), Gaps = 6/255 (2%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D  + LF  +   G  PD   Y  +I+   + GR+         + ++ F  DA  +  L
Sbjct: 329 DMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNIL 388

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I G C + ++ EA  L  +++  G +PDV+TY TL++GLC+ G       L   M +   
Sbjct: 389 IGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDG- 447

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                C+P  +T+ T+  G CK G  D+A  +F  M +  I P+ V Y +LI   C + +
Sbjct: 448 -----CQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSRE 502

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            + A  LF EM ++ V  NV T+N ++  L      ++A  L++ M +    P+    + 
Sbjct: 503 VDVAIKLFDEMREKNVPANVTTYNALLKGLQDKKMAEKAFELMDRMREERCTPNYVTVDV 562

Query: 274 LMDGFCLTGRVNRAK 288
           LM+     G   R K
Sbjct: 563 LMEWLPEIGETERLK 577



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 7/209 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++NIL G   + K       L + +  +GL PD+YTYN L++  CK G  S    +LG +
Sbjct: 384 AYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHM 443

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P  VTF +L+ G C   +  EA  +F  +     +P+   Y TLI+ LC++   
Sbjct: 444 IDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREV 503

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
            VA+ LF+EM   N         +  TY+ +  GL  +   +KA EL  +M++E   P+ 
Sbjct: 504 DVAIKLFDEMREKN------VPANVTTYNALLKGLQDKKMAEKAFELMDRMREERCTPNY 557

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           VT   L+       +    KC F++  DQ
Sbjct: 558 VTVDVLMEWLPEIGETERLKC-FMQQRDQ 585


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 174/329 (52%), Gaps = 9/329 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P PV +FN+L   L K         L   +   G  P+  TYN L++  C  G++     
Sbjct: 243 PNPV-AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMS 301

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R++ +   P+ +TF +L+ G     R ++   +   L   G + + F+Y++LI+GL 
Sbjct: 302 LLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLF 361

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G     + L++EM          CKP+ I YS + DGLC+EG  D+AKE  ++MK++ 
Sbjct: 362 KEGKGEHGMQLWKEMVEKG------CKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKG 415

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+  TY+SL+ G+  A D ++A  ++ EM D     + V +++++N LCKNGK+ EA 
Sbjct: 416 HTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEAL 475

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--ESNGCMRDVFSYGILIN 311
            + + M+  G++ D   Y++++ GFC    V +  +LF  M   +     DV +Y IL+N
Sbjct: 476 IVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLN 535

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +C    +  A+ + + ML +G  P  +T
Sbjct: 536 AFCTKNSVSRAIDILNTMLDQGCDPDFIT 564



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   SFN++   L +  + D  + +F+ ++      D YTY+ L++  C  GR+     +
Sbjct: 173 PNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSL 232

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ V F  LI  LC +  +  A+ L   +   GC P+  TY +L++GLC 
Sbjct: 233 LDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCL 292

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A++L   M          C P+ IT+ T+ DG  K G       + + ++++  
Sbjct: 293 KGKLDKAMSLLNRMVANK------CVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGY 346

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +  +Y+SLI G            L+ EM+++G +PN + ++ +++ LC+ GK DEA  
Sbjct: 347 RGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKE 406

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  M   G  P++  Y++LM G+   G +++A  ++  M  N C      Y ILING C
Sbjct: 407 YLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLC 466

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           KN +++ AL ++ +MLS+GI+  VV Y++
Sbjct: 467 KNGKLKEALIVWKQMLSRGIKLDVVAYSS 495



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           +P+  ++  +I  LCR G+   A+ +F  M++ N      C  D  TYST+  GLC EG 
Sbjct: 172 QPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRN------CVADGYTYSTLMHGLCNEGR 225

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D+A  L  +M+ E   P+ V +  LI   C   D + A  L   M  +G  PN VT+N 
Sbjct: 226 IDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNS 285

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ LC  GK+D+A  LL  M+     P+   + TL+DGF   GR      + VS+E  G
Sbjct: 286 LVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKG 345

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              + FSY  LI+G  K  + E  + L+ EM+ KG +P  + Y+ 
Sbjct: 346 YRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSA 390



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 3/256 (1%)

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRA-FGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           +F  + K         +A  LF ++ A F CK  V ++ T++N + + G   +AL  +  
Sbjct: 102 SFIIMFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNH 161

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           + + N    +  +P+ ++++ +   LC+ G VD+A E+F  M D N   D  TY++L+ G
Sbjct: 162 VIDSNSFSNI--QPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHG 219

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C     +EA  L  EM  +G  PN V FNV+++ LCK G +  AS+L++ M   G  P+
Sbjct: 220 LCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPN 279

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              YN+L+ G CL G++++A  L   M +N C+ +  ++G L++G+ K+      + +  
Sbjct: 280 EVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLV 339

Query: 328 EMLSKGIRPTVVTYNT 343
            +  KG R    +Y++
Sbjct: 340 SLEEKGYRGNEFSYSS 355



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 29/292 (9%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S++ L   L K    +  + L+K +   G  P+   Y+ LI+  C+ G+       L  +
Sbjct: 352 SYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEM 411

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                TP++ T++SL+ G      I +A  ++ ++    C      Y+ LINGLC+ G  
Sbjct: 412 KNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKL 471

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM--KDENINP 196
             AL ++++M +     G+  K D + YS++  G C    V++  +LF +M   +  + P
Sbjct: 472 KEALIVWKQMLSR----GI--KLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQP 525

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN------GK-- 248
           DVVTY  L+  FC  N  + A  +   M+DQG  P+ +T ++ +  L  N      G+  
Sbjct: 526 DVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGREF 585

Query: 249 MDE-------------ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           +DE             AS ++E+M+Q  + P  S +   +   C   +V + 
Sbjct: 586 LDELVVRLIKRQRTVGASNIIEVMLQKFLLPKPSTWALAVQQLCKPMKVRKT 637


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 178/335 (53%), Gaps = 7/335 (2%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
            M  SP      +IL G L + + +D+V   ++ + S GL PD++ Y +L  C  K G  
Sbjct: 157 EMKCSPDSKACLSILNG-LVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLY 215

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
           S    +L  +      P+   +T  I  LC ++++ EA  +F  ++  G  P+++TY+ +
Sbjct: 216 SKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAM 275

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I+G C+TG+   A  L++E+            P+ + + T+ DG CK   +  A+ LF+ 
Sbjct: 276 IDGYCKTGNVRQAYGLYKEILVAE------LLPNVVVFGTLVDGFCKARELVTARSLFVH 329

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M    ++P++  Y  LI G C + +  EA  L  EM    + P+V T+ +++N LC   +
Sbjct: 330 MVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQ 389

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + EA+RL + M    + P ++ YN+L+ G+C    + +A +L   M ++G   ++ ++  
Sbjct: 390 VAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFST 449

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LI+GYC  ++I+ A+ LY EM  KGI P VVTY  
Sbjct: 450 LIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTA 484



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 174/362 (48%), Gaps = 41/362 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  + I    L ++   +    +F+ +   G+ P+LYTY+ +I+ +CK G V   + +
Sbjct: 232 PNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGL 291

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              IL +   P+ V F +L+ G C    ++ A +LF  +  FG  P+++ Y  LI+G C+
Sbjct: 292 YKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCK 351

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+ + A+ L  EM + N        PD  TY+ + +GLC E  V +A  LF KMK+E I
Sbjct: 352 SGNMLEAVGLLSEMESLN------LSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERI 405

Query: 195 -----------------------------------NPDVVTYTSLIRGFCYANDWNEAKC 219
                                               P+++T+++LI G+C   D   A  
Sbjct: 406 FPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMG 465

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L+ EM  +G+ P+VVT+  +++   K   M EA RL   M++ G+ P+   +  L+DGF 
Sbjct: 466 LYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFW 525

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             GR++ A + +          +   +  LI G C+N  I  A   +S+M S GI P + 
Sbjct: 526 KEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDIC 585

Query: 340 TY 341
           +Y
Sbjct: 586 SY 587



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  + +LF C  K   Y     L   + S+G+ P++Y Y I I   C+  ++     +
Sbjct: 197 PDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKM 256

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+  T++++I G C    + +A  L+ ++      P+V  + TL++G C+
Sbjct: 257 FELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCK 316

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A +LF  M     +FGV   P+   Y+ +  G CK G + +A  L  +M+  N+
Sbjct: 317 ARELVTARSLFVHMV----KFGV--DPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNL 370

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDV TYT LI G C  +   EA  LF +M ++ + P+  T+N +++  CK   M++A  
Sbjct: 371 SPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALD 430

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M   GV P+   ++TL+DG+C    +  A  L+  M   G + DV +Y  LI+ + 
Sbjct: 431 LCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHF 490

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K   ++ AL LYS+ML  GI P   T+
Sbjct: 491 KEANMKEALRLYSDMLEAGIHPNDHTF 517



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 148/343 (43%), Gaps = 41/343 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  F  L     K +   T  SLF  +   G+ P+LY YN LI+  CK G +     +
Sbjct: 302 PNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGL 361

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +     +PD  T+T LI GLC E ++ EA  LF K++     P   TY +LI+G C+
Sbjct: 362 LSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCK 421

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL+L  EM     E      P+ IT+ST+ DG C    +  A  L+ +M  + I
Sbjct: 422 EYNMEQALDLCSEMTASGVE------PNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGI 475

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN---------------------- 232
            PDVVTYT+LI       +  EA  L+ +M++ G+ PN                      
Sbjct: 476 VPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAID 535

Query: 233 -------------VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
                         V F  ++  LC+NG +  ASR    M   G+ PD   Y +++ G  
Sbjct: 536 FYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHL 595

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
              R+     L   M   G + ++    +L   Y  N  ++ A
Sbjct: 596 QEKRITDTMMLQCDMIKTGILPNLLVNQLLARFYQANGYVKSA 638



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 124/261 (47%), Gaps = 33/261 (12%)

Query: 114 RAFGCKPDVFTYTTLINGLCRTGH-------------------TIVALNLF--------- 145
           R   C PD     +++NGL R                        +   LF         
Sbjct: 156 REMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLY 215

Query: 146 ---EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
              E++ +     G+  KP+   Y+     LC++  +++A+++F  MK   + P++ TY+
Sbjct: 216 SKKEKLLDEMTSLGI--KPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYS 273

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           ++I G+C   +  +A  L+ E++   + PNVV F  +++  CK  ++  A  L   M++ 
Sbjct: 274 AMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKF 333

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           GV P+  VYN L+ G C +G +  A  L   MES     DVF+Y ILING C   ++  A
Sbjct: 334 GVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEA 393

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
             L+ +M ++ I P+  TYN+
Sbjct: 394 NRLFQKMKNERIFPSSATYNS 414



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 2/203 (0%)

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
           + + LFEE    + E    C PD+    +I +GL +    D     +  M    + PDV 
Sbjct: 143 LEMGLFEEALWVSREMK--CSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVH 200

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            Y  L +       +++ + L  EM   G++PNV  + + + +LC++ KM+EA ++ ELM
Sbjct: 201 IYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELM 260

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + GV P+   Y+ ++DG+C TG V +A  L+  +     + +V  +G L++G+CK +E+
Sbjct: 261 KKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKAREL 320

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
             A SL+  M+  G+ P +  YN
Sbjct: 321 VTARSLFVHMVKFGVDPNLYVYN 343


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 174/329 (52%), Gaps = 9/329 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P PV +FN+L   L K         L   +   G  P+  TYN L++  C  G++     
Sbjct: 68  PNPV-AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMS 126

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R++ +   P+ +TF +L+ G     R ++   +   L   G + + F+Y++LI+GL 
Sbjct: 127 LLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLF 186

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G     + L++EM          CKP+ I YS + DGLC+EG  D+AKE  ++MK++ 
Sbjct: 187 KEGKGEHGMQLWKEMVEKG------CKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKG 240

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+  TY+SL+ G+  A D ++A  ++ EM D     + V +++++N LCKNGK+ EA 
Sbjct: 241 HTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEAL 300

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--ESNGCMRDVFSYGILIN 311
            + + M+  G++ D   Y++++ GFC    V +  +LF  M   +     DV +Y IL+N
Sbjct: 301 IVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLN 360

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +C    +  A+ + + ML +G  P  +T
Sbjct: 361 AFCTKNSVSRAIDILNTMLDQGCDPDFIT 389



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 158/310 (50%), Gaps = 6/310 (1%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D  + +F+ ++      D YTY+ L++  C  GR+     +L  +      P+ V F  L
Sbjct: 17  DQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVL 76

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I  LC +  +  A+ L   +   GC P+  TY +L++GLC  G    A++L   M     
Sbjct: 77  ISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANK- 135

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                C P+ IT+ T+ DG  K G       + + ++++    +  +Y+SLI G      
Sbjct: 136 -----CVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGK 190

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
                 L+ EM+++G +PN + ++ +++ LC+ GK DEA   L  M   G  P++  Y++
Sbjct: 191 GEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSS 250

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           LM G+   G +++A  ++  M  N C      Y ILING CKN +++ AL ++ +MLS+G
Sbjct: 251 LMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRG 310

Query: 334 IRPTVVTYNT 343
           I+  VV Y++
Sbjct: 311 IKLDVVAYSS 320



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 6/216 (2%)

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           ++  LCR G+   A+ +F  M++ N      C  D  TYST+  GLC EG +D+A  L  
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRN------CVADGYTYSTLMHGLCNEGRIDEAVSLLD 59

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M+ E   P+ V +  LI   C   D + A  L   M  +G  PN VT+N +++ LC  G
Sbjct: 60  EMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKG 119

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+D+A  LL  M+     P+   + TL+DGF   GR      + VS+E  G   + FSY 
Sbjct: 120 KLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYS 179

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LI+G  K  + E  + L+ EM+ KG +P  + Y+ 
Sbjct: 180 SLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSA 215



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 29/291 (9%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S++ L   L K    +  + L+K +   G  P+   Y+ LI+  C+ G+       L  +
Sbjct: 177 SYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEM 236

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                TP++ T++SL+ G      I +A  ++ ++    C      Y+ LINGLC+ G  
Sbjct: 237 KNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKL 296

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM--KDENINP 196
             AL ++++M +         K D + YS++  G C    V++  +LF +M   +  + P
Sbjct: 297 KEALIVWKQMLSRG------IKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQP 350

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN------GK-- 248
           DVVTY  L+  FC  N  + A  +   M+DQG  P+ +T ++ +  L  N      G+  
Sbjct: 351 DVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGREF 410

Query: 249 MDE-------------ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +DE             AS ++E+M+Q  + P  S +   +   C   +V +
Sbjct: 411 LDELVVRLIKRQRTVGASNIIEVMLQKFLLPKPSTWALAVQQLCKPMKVRK 461


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 172/329 (52%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++ +L   L      +    L  ++   GL P++ TYN LIN +CK G +     V
Sbjct: 356 PNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDV 415

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      P+  T+  LIKG C  + + +A  +  K+      PDV TY +LI+G CR
Sbjct: 416 VELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+   A  L   M     + G+V  PD  TY+++ D LCK   V++A +LF  ++ +++
Sbjct: 475 SGNFDSAYRLLSLM----NDRGLV--PDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDV 528

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV YT+LI G+C A   NEA  +  +M+ +   PN +TFN +++ LC +GK+ EA+ 
Sbjct: 529 IPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATL 588

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M++I ++P  S    L+      G  + A   F  M S+G   D  +Y   I  YC
Sbjct: 589 LEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYC 648

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   ++ A  + ++M   G+ P + TY++
Sbjct: 649 REGRLQDAEDMVAKMKENGVSPDLFTYSS 677



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 183/388 (47%), Gaps = 65/388 (16%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L   LA+    D +  ++  +    + P++YTYN ++N +CK+G V      +  I+
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245

Query: 80  RSCFTPDAVTFTSLI-----------------------------------KGLCAESRIM 104
            +   PD  T+TSLI                                    GLC E RI 
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRID 305

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV------- 157
           EA  LF K++   C P V TYT LI  LC +     ALNL +EM     +  +       
Sbjct: 306 EAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLI 365

Query: 158 -----VCK-----------------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                 CK                 P+ ITY+ + +G CK G ++ A ++   M+  N+ 
Sbjct: 366 DSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLR 425

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+  TY  LI+G+C  N  ++A  +  +M+++ V P+VVT+N +++  C++G  D A RL
Sbjct: 426 PNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           L LM   G+ PD   Y +++D  C + RV  A +LF S+E    + +V  Y  LI+GYCK
Sbjct: 485 LSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCK 544

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++  A  +  +MLSK   P  +T+N 
Sbjct: 545 AGKVNEAHLMLEKMLSKNCLPNSLTFNA 572



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 166/313 (53%), Gaps = 12/313 (3%)

Query: 36  VLSLFKRLNSIGLFPDLYT-----YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
           VL L +++N    F   Y      YN L+N   + G V     V   +L     P+  T+
Sbjct: 162 VLDLCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTY 221

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
             ++ G C    + EA    + +   G  PD FTYT+LI G C+      A  +F+EM  
Sbjct: 222 NKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPL 281

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
                   C+ + + Y+ +  GLC E  +D+A +LF+KMKD++  P V TYT LI+  C 
Sbjct: 282 KG------CRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCG 335

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
           +   +EA  L  EM ++G++PN+ T+ V+++ LC   K+++A  LL  M++ G+ P+   
Sbjct: 336 SERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVIT 395

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           YN L++G+C  G +  A ++   MES     +  +Y  LI GYCK + +  A+ + ++ML
Sbjct: 396 YNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKML 454

Query: 331 SKGIRPTVVTYNT 343
            + + P VVTYN+
Sbjct: 455 ERKVLPDVVTYNS 467



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 166/343 (48%), Gaps = 25/343 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  +   L K+K  +    LF  L    + P++  Y  LI+ +CK G+V+   ++
Sbjct: 495 PDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLM 554

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L     P+++TF +LI GLC + ++ EA  L  K+     +P V T T LI+ L +
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLK 614

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A   F++M +         KPDA TY+T     C+EG +  A+++  KMK+  +
Sbjct: 615 DGDFDHAYRRFQQMLSSG------TKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGV 668

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC--KNGKM--- 249
           +PD+ TY+SLI+G+      N A  +   M D G +P+  TF  ++  L   K GK+   
Sbjct: 669 SPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGG 728

Query: 250 -------------DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
                        D    LLE M++ GV P+A  Y  LM G C  G +  A+++F  M+ 
Sbjct: 729 EPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQ 788

Query: 297 -NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
             G       +  L++  CK ++   A  +  +M+  G  P +
Sbjct: 789 KEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQL 831



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 149/317 (47%), Gaps = 25/317 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +  IL   L K+  +D     F+++ S G  PD +TY   I  +C+ GR+     +
Sbjct: 600 PTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDM 659

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN---- 130
           + ++  +  +PD  T++SLIKG     R   A  +  ++   GC+P   T+ +LI     
Sbjct: 660 VAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLE 719

Query: 131 -----------GLCRTGHTI---VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
                      G+C   + +   + + L E+M     E GV   P+A +Y  +  G+C+ 
Sbjct: 720 MKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMV----EHGVT--PNAKSYEKLMLGICEI 773

Query: 177 GFVDKAKELFLKMKD-ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           G +  A+++F  M+  E I+P  + + +L+   C     NEA  +  +M+  G  P + +
Sbjct: 774 GNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLES 833

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
             +++  L K G+ +  + + + ++Q G   D   +  ++DG    G V    ELF  ME
Sbjct: 834 CKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVME 893

Query: 296 SNGCMRDVFSYGILING 312
            NGC     +Y +LI G
Sbjct: 894 KNGCTFSSQTYSLLIEG 910



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 152/347 (43%), Gaps = 25/347 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L  +        L +++  I L P + T  ILI+   K G     +  
Sbjct: 565 PNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRR 624

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L S   PDA T+T+ I+  C E R+ +A  +  K++  G  PD+FTY++LI G   
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGD 684

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF---------------- 178
            G T  A  + + M +        C+P   T+ ++   L +  +                
Sbjct: 685 LGRTNSAFVVLKRMHDTG------CEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNM 738

Query: 179 --VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD-QGVQPNVVT 235
              D   EL  KM +  + P+  +Y  L+ G C   +   A+ +F  M   +G+ P+ + 
Sbjct: 739 MEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELV 798

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           FN +++  CK  K +EA+++++ MI +G  P       L+      G   R   +F ++ 
Sbjct: 799 FNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLL 858

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             G   D  ++ I+I+G  K   +E    L++ M   G   +  TY+
Sbjct: 859 QCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYS 905



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 53/129 (41%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD+M +     P    FN L  C  K + ++    +   +  +G  P L +  ILI   
Sbjct: 782 VFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRL 841

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G    G  V   +L+  +  D + +  +I G+  +  +     LF  +   GC    
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSS 901

Query: 123 FTYTTLING 131
            TY+ LI G
Sbjct: 902 QTYSLLIEG 910


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 162/328 (49%), Gaps = 8/328 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
            C +N L     + ++ D V  L K + + G+ P + TY IL++   + G +S    V  
Sbjct: 183 ACCYNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYD 242

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + R     D   ++++I   C    +  A+ +F +    G +P+  TY  LING C+ G
Sbjct: 243 EMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIG 302

Query: 137 HTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
               A  L  +M   G G        + I ++T+ DG C+ G V+KA E+   M+   I 
Sbjct: 303 QIEAAEMLLADMQLRGVGH-------NQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIE 355

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
            D+ TY +L  G C  N   +AK L   M ++GV PN V++  +++   K G M EA RL
Sbjct: 356 LDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRL 415

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M   G RP    YN ++DG+   G +  A+     ME  G + D+++Y  L++G+C 
Sbjct: 416 FRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCV 475

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           N +++ AL L+ EM  +G +P VV Y  
Sbjct: 476 NGKVDVALRLFEEMKHRGTKPNVVAYTA 503



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 164/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL   L++      V +++  +    +  D+Y Y+ +IN +C+ G V     V
Sbjct: 216 PTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEV 275

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               +     P+  T+ +LI G C   +I  A  L   ++  G   +   + T+I+G CR
Sbjct: 276 FDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCR 335

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL +   M     E       D  TY+T+  GLC+   ++ AK+L   M ++ +
Sbjct: 336 HGMVEKALEIKAVMEKMGIEL------DIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGV 389

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V+YT+LI       D  EA+ LF +M  +G +P+VVT+NV+++   KNG + EA R
Sbjct: 390 APNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAER 449

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + M + G+ PD   Y  L+ G C+ G+V+ A  LF  M+  G   +V +Y  L++G  
Sbjct: 450 FKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLA 509

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    E A  LY +ML+ G+ P    Y+
Sbjct: 510 KEGRSEEAFQLYDDMLAAGLTPDDTLYS 537



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 142/289 (49%), Gaps = 6/289 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           + +++++ FCK G V     +L  + R     +A  + SL+     +      A L  ++
Sbjct: 150 SASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEM 209

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              G +P V TYT L++GL R G       +++EM   N         D   YS + +  
Sbjct: 210 ENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKN------VAGDVYFYSAVINAY 263

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G V +A E+F +     + P+  TY +LI GFC       A+ L  +M  +GV  N 
Sbjct: 264 CRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQ 323

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           + FN +++  C++G +++A  +  +M ++G+  D   YNTL  G C   R+  AK+L   
Sbjct: 324 IVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHI 383

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M   G   +  SY  LI+ + K  ++  A  L+ +M  KG RP+VVTYN
Sbjct: 384 MAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYN 432



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 140/281 (49%), Gaps = 11/281 (3%)

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTS---LIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           G++     +LG+ + SC  P +VT  S   ++ G C    + +A  L  +L   G   + 
Sbjct: 126 GQLPAAADLLGKAIASC--PASVTPLSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNA 183

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y +L++   R  +      L +EM N   E      P   TY+ + DGL + G + K 
Sbjct: 184 CCYNSLLDSYTRQRNDDAVAGLLKEMENRGVE------PTVGTYTILVDGLSRAGDISKV 237

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + ++ +MK +N+  DV  Y+++I  +C   +   A  +F E +  GV+PN  T+  ++N 
Sbjct: 238 EAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALING 297

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G+++ A  LL  M   GV  +  V+NT++DG+C  G V +A E+   ME  G   D
Sbjct: 298 FCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELD 357

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +++Y  L  G C+   +E A  L   M  KG+ P  V+Y T
Sbjct: 358 IYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTT 398



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 131/264 (49%), Gaps = 6/264 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ P+  TY  LIN FCK+G++    ++L  +       + + F ++I G C    + +A
Sbjct: 283 GVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKA 342

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +   +   G + D++TY TL  GLCR      A  L   MA    E GV   P+ ++Y
Sbjct: 343 LEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMA----EKGVA--PNYVSY 396

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+     KEG + +A+ LF  M+ +   P VVTY  +I G+       EA+    EM  
Sbjct: 397 TTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEK 456

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G+ P++ T+  +++  C NGK+D A RL E M   G +P+   Y  L+ G    GR   
Sbjct: 457 KGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEE 516

Query: 287 AKELFVSMESNGCMRDVFSYGILI 310
           A +L+  M + G   D   Y +L+
Sbjct: 517 AFQLYDDMLAAGLTPDDTLYSVLV 540



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 129/273 (47%), Gaps = 6/273 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   ++  L     K    +    L   +   G+  +   +N +I+ +C+ G V  
Sbjct: 282 HGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEK 341

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   + +     D  T+ +L  GLC  +R+ +A  L   +   G  P+  +YTTLI+
Sbjct: 342 ALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLIS 401

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
              + G  + A  LF +M  G G      +P  +TY+ + DG  K G + +A+    +M+
Sbjct: 402 IHAKEGDMVEARRLFRDM-EGKG-----SRPSVVTYNVMIDGYIKNGSIREAERFKKEME 455

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            + + PD+ TY  L+ G C     + A  LF EM  +G +PNVV +  +++ L K G+ +
Sbjct: 456 KKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSE 515

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           EA +L + M+  G+ PD ++Y+ L+       R
Sbjct: 516 EAFQLYDDMLAAGLTPDDTLYSVLVGSLHTDSR 548



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 6/235 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN +     ++   +  L +   +  +G+  D+YTYN L    C++ R+     +L  + 
Sbjct: 326 FNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMA 385

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ V++T+LI     E  ++EA  LF  +   G +P V TY  +I+G  + G   
Sbjct: 386 EKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIR 445

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A    +EM     + G+V  PD  TY+ +  G C  G VD A  LF +MK     P+VV
Sbjct: 446 EAERFKKEME----KKGLV--PDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVV 499

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            YT+L+ G        EA  L+ +M+  G+ P+   ++V++  L  + + D   R
Sbjct: 500 AYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVGSLHTDSRKDPLPR 554


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 170/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L    +     +    L   + S G  P +YTYN +IN  CK G+      V
Sbjct: 258 PDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEV 317

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +LRS  +PD+ T+ SL+   C +   +E   +F+ +R+    PD+  ++++++   R
Sbjct: 318 FAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTR 377

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+   AL  F    N   E G++  PD + Y+ +  G C++G + +A  L  +M  +  
Sbjct: 378 SGNLDKALMYF----NSVKEAGLI--PDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGC 431

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             DVVTY +++ G C      EA  LF EM ++G+ P+  T  ++++  CK G +  A  
Sbjct: 432 AMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAME 491

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M +  ++ D   YNTL+DGF   G ++ AKE++  M S   +    S+ IL+N  C
Sbjct: 492 LFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALC 551

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               +  A  ++ EM+SK I+PTV+  N+
Sbjct: 552 SKGHLSEAFRVWDEMISKSIKPTVMICNS 580



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 171/326 (52%), Gaps = 6/326 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V + NI+   L K+   + V +    +   G++PD+ TYN LI+ +   G +   F ++ 
Sbjct: 225 VYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMH 284

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +    F+P   T+ ++I GLC   +   A  +F ++   G  PD  TY +L+   C+ G
Sbjct: 285 AMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG 344

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
             +   N+F +M + +        PD + +S++     + G +DKA   F  +K+  + P
Sbjct: 345 DAVETENIFSDMRSRD------VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 398

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D V YT LI+G+C     +EA  L  EM+ QG   +VVT+N I++ LCK   + EA +L 
Sbjct: 399 DNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLF 458

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M + G+ PD+     L+DG C  G +  A ELF  M+      DV +Y  L++G+ K 
Sbjct: 459 NEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKV 518

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
            +I+ A  ++++M+SK I PT ++++
Sbjct: 519 GDIDTAKEIWADMVSKEILPTPISFS 544



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 177/343 (51%), Gaps = 9/343 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  MLR   SP      ++L     K    +T  ++F  + S  + PDL  ++ +++ F
Sbjct: 317 VFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETE-NIFSDMRSRDVVPDLVCFSSMMSLF 375

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + G +    +    +  +   PD V +T LI+G C +  I EA  L  ++   GC  DV
Sbjct: 376 TRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDV 435

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY T+++GLC+      A  LF EM    G F     PD+ T + + DG CK G +  A
Sbjct: 436 VTYNTILHGLCKRKMLGEADKLFNEMTE-RGLF-----PDSYTLTILIDGHCKLGNLQNA 489

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ELF KMK++ I  DVVTY +L+ GF    D + AK ++ +M+ + + P  ++F++++N 
Sbjct: 490 MELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNA 549

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC  G + EA R+ + MI   ++P   + N+++ G+C +G  +  +     M S G + D
Sbjct: 550 LCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPD 609

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSK--GIRPTVVTYNT 343
             SY  LI G+ K + +  A  L  +M  K  G+ P V TYN+
Sbjct: 610 CISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNS 652



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 175/343 (51%), Gaps = 9/343 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF  M      P  VC F+ +     ++ + D  L  F  +   GL PD   Y ILI  +
Sbjct: 352 IFSDMRSRDVVPDLVC-FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY 410

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G +S    +   +L+     D VT+ +++ GLC    + EA  LF ++   G  PD 
Sbjct: 411 CRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDS 470

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +T T LI+G C+ G+   A+ LF++M           K D +TY+T+ DG  K G +D A
Sbjct: 471 YTLTILIDGHCKLGNLQNAMELFKKMKEKR------IKLDVVTYNTLLDGFGKVGDIDTA 524

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           KE++  M  + I P  ++++ L+   C     +EA  ++ EM+ + ++P V+  N ++  
Sbjct: 525 KEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKG 584

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN--GCM 300
            C++G   +    LE MI  G  PD   YNTL+ GF     +++A  L   ME    G +
Sbjct: 585 YCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLV 644

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            DVF+Y  +++G+C+  +++ A ++  +M+ +G+ P   TY +
Sbjct: 645 PDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTS 687



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 152/321 (47%), Gaps = 6/321 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++L     + +        F  L S G    +   N LI    ++G V   + +   I 
Sbjct: 158 FDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEIS 217

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           RS    +  T   ++  LC + ++ +     ++++  G  PD+ TY TLI+     G   
Sbjct: 218 RSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLME 277

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L   M +          P   TY+T+ +GLCK G  ++AKE+F +M    ++PD  
Sbjct: 278 EAFELMHAMPSKG------FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDST 331

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY SL+   C   D  E + +F +M  + V P++V F+ +M+   ++G +D+A      +
Sbjct: 332 TYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 391

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + G+ PD  +Y  L+ G+C  G ++ A  L   M   GC  DV +Y  +++G CK K +
Sbjct: 392 KEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 451

Query: 320 EGALSLYSEMLSKGIRPTVVT 340
             A  L++EM  +G+ P   T
Sbjct: 452 GEADKLFNEMTERGLFPDSYT 472



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 134/284 (47%), Gaps = 8/284 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N +   L K K       LF  +   GLFPD YT  ILI+  CK+G +     +  
Sbjct: 435 VVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFK 494

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++       D VT+ +L+ G      I  A  ++  + +    P   +++ L+N LC  G
Sbjct: 495 KMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKG 554

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           H   A  +++EM + +       KP  +  +++  G C+ G     +    KM  E   P
Sbjct: 555 HLSEAFRVWDEMISKS------IKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVP 608

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ--GVQPNVVTFNVIMNELCKNGKMDEASR 254
           D ++Y +LI GF    + ++A  L  +M ++  G+ P+V T+N I++  C+  +M EA  
Sbjct: 609 DCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEA 668

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +L  MI+ GV PD S Y +L++GF     +  A      M   G
Sbjct: 669 VLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRG 712



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 183/400 (45%), Gaps = 77/400 (19%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKR-LNSIGL-FPDL----YTYN 56
           + ++++R++P    +    +L+ C  +N      LSL +R ++ +G  FP+      + +
Sbjct: 59  VRNHLIRLNP----LAVVEVLYRC--RND-----LSLGQRFVDQLGFNFPNFKHTSLSLS 107

Query: 57  ILINCFCKMGRVSPGFVVLGRILR------------------SCFTPDAVTFTSLIKGLC 98
            +I+   + GR+S     + R++R                  +C + D+V F  LI+   
Sbjct: 108 AMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSV-FDLLIRTFV 166

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
              ++ EA   FT LR+ G    +     LI  L R G   +A  +++E++      GV 
Sbjct: 167 QARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSG--VGV- 223

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  T + + + LCK+G ++K      +++++ + PD+VTY +LI  +       EA 
Sbjct: 224 ---NVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAF 280

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL---- 274
            L   M  +G  P V T+N ++N LCK+GK + A  +   M++ G+ PD++ Y +L    
Sbjct: 281 ELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEA 340

Query: 275 -------------------------------MDGFCLTGRVNRAKELFVSMESNGCMRDV 303
                                          M  F  +G +++A   F S++  G + D 
Sbjct: 341 CKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 400

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             Y ILI GYC+   I  A++L +EML +G    VVTYNT
Sbjct: 401 VIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNT 440



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 4/216 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N L     K    DT   ++  + S  + P   +++IL+N  C  G +S  F V  
Sbjct: 505 VVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWD 564

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P  +   S+IKG C      +      K+ + G  PD  +Y TLI G  +  
Sbjct: 565 EMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEE 624

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +   A  L ++M    G  G+V  PD  TY++I  G C+E  + +A+ +  KM +  +NP
Sbjct: 625 NMSKAFGLVKKMEEKQG--GLV--PDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNP 680

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           D  TYTSLI GF   ++  EA     EM+ +G  P+
Sbjct: 681 DRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 168/327 (51%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++ +L    +++   +    LF  +   G+ PD+Y Y  +IN  CK G +   FV+  
Sbjct: 262 VTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFD 321

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P+A T+ +LI G C    +  A  +   +++ G   +   + TL++G C+ G
Sbjct: 322 EMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKG 381

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL L   M     E       DA T + I  G C+    ++AK L L M++  + P
Sbjct: 382 MIDEALRLQNIMQQKGFEI------DAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAP 435

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +VV+++ LI  +C   ++ EA+ LF  M  +G  P+VVT+N  +   CK GKM+EA +L+
Sbjct: 436 NVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLI 495

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M + G+ PD   Y +L+DG   +G V+RA ELF  M   G  R+V +Y ++I+G  K+
Sbjct: 496 NEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKD 555

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
              + A  LY EM  +GI P    Y++
Sbjct: 556 GRADEAFKLYDEMNKEGIVPDDGIYSS 582



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 161/341 (47%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FDY  +          F  L   L ++ + +  +   +++   G+   + ++  +++  
Sbjct: 144 VFDYARKKGFEIDERSCFEFLLA-LKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGL 202

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G V     ++  ++   F P  +T+ +L+ G      +     + + +       +V
Sbjct: 203 CKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNV 262

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LI    R+     A  LF+EM     E      PD   Y++I +  CK G + +A
Sbjct: 263 TTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIE------PDVYIYTSIINWNCKFGNMKRA 316

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF +M +  + P+  TY +LI G C A +   A+ +  +M  +GV  N V FN +M+ 
Sbjct: 317 FVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDG 376

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G +DEA RL  +M Q G   DA   N +  GFC + R   AK L ++ME  G   +
Sbjct: 377 YCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPN 436

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V S+ ILI+ YCK +    A  L+  M  KG  P+VVTYN 
Sbjct: 437 VVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNA 477



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 142/318 (44%), Gaps = 17/318 (5%)

Query: 3   IFDYMLRMHPSPP-----PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNI 57
           +FD ML+    P       + ++N  FG + +         LF  +    L P+ YTY  
Sbjct: 284 LFDEMLKKGIEPDVYIYTSIINWNCKFGNMKR------AFVLFDEMTERRLVPNAYTYGA 337

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           LIN  CK G +    +++  +       + V F +L+ G C +  I EA  L   ++  G
Sbjct: 338 LINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKG 397

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
            + D FT   + +G CR+     A  L   M     E GV   P+ +++S + D  CKE 
Sbjct: 398 FEIDAFTCNIIASGFCRSNRREEAKRLLLTME----ERGVA--PNVVSFSILIDIYCKEQ 451

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
              +A+ LF  M+ +   P VVTY + I  +C      EA  L  EM ++G+ P+  T+ 
Sbjct: 452 NFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYT 511

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +++    +G +D A  L   M Q+G+  +   Y  ++ G    GR + A +L+  M   
Sbjct: 512 SLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKE 571

Query: 298 GCMRDVFSYGILINGYCK 315
           G + D   Y  LI    K
Sbjct: 572 GIVPDDGIYSSLIASLHK 589



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 105/230 (45%), Gaps = 6/230 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN L     K    D  L L   +   G   D +T NI+ + FC+  R      +L  + 
Sbjct: 370 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 429

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ V+F+ LI   C E    EA  LF  +   G  P V TY   I   C+ G   
Sbjct: 430 ERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 489

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L  EM     E G++  PD  TY+++ DG    G VD+A ELF +M    +N +VV
Sbjct: 490 EAYKLINEMQ----ERGLM--PDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVV 543

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           TYT +I G       +EA  L+ EM  +G+ P+   ++ ++  L K G +
Sbjct: 544 TYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPL 593



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 54/128 (42%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N       K    +    L   +   GL PD YTY  LI+     G V     +
Sbjct: 470 PSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALEL 529

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +     + VT+T +I GL  + R  EA  L+ ++   G  PD   Y++LI  L +
Sbjct: 530 FNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 589

Query: 135 TGHTIVAL 142
            G  +  L
Sbjct: 590 VGPLVSGL 597


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 185/399 (46%), Gaps = 76/399 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++++   L +    D  L L + + + GL PD Y Y  LI+ FC+  R + G  +
Sbjct: 265 PNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSM 324

Query: 75  LGRILRSCFTPDAVTFTSLI-----------------------------------KGLCA 99
           L  +      PD V +T+LI                                    GLC 
Sbjct: 325 LDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCK 384

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLI------------------------------ 129
              + +A  LF+++   G KPD+ TY  LI                              
Sbjct: 385 IGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYM 444

Query: 130 -----NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
                NGLC  G    A  LF+EM +    +G+  KP+ + Y+TI  GL KEG  ++A +
Sbjct: 445 CGAIVNGLCHCGDLTRANELFQEMIS----WGL--KPNIVIYTTIVKGLVKEGRFEEAIK 498

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +   MKD+ ++PDV  Y ++I GFC A    E K   +EM+ +G++PNV T+   ++  C
Sbjct: 499 ILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYC 558

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           + G+M  A R    M+  G+ P+  +   L+DG+C  G   +A   F  M   G + DV 
Sbjct: 559 RAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQ 618

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ +LI+G  KN +++ A+ ++SE+L KG+ P V TY +
Sbjct: 619 THSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTS 657



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 159/305 (52%), Gaps = 6/305 (1%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +  +G+ PD+ TYN LI  + K+  +   + +L  I +   T +A    +++ GLC
Sbjct: 394 LFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLC 453

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
               +  A  LF ++ ++G KP++  YTT++ GL + G    A+ +   M +        
Sbjct: 454 HCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQG------ 507

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
             PD   Y+T+  G CK G +++ K   ++M  + + P+V TY + I G+C A +   A+
Sbjct: 508 LSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAE 567

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
             FIEM+D G+ PN V    +++  CK+G   +A      M+  GV PD   ++ L+ G 
Sbjct: 568 RSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGL 627

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
              G++  A  +F  +   G + DVF+Y  LI+  CK  +++ A  L+ +M  KGI P +
Sbjct: 628 SKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNI 687

Query: 339 VTYNT 343
           VTYN 
Sbjct: 688 VTYNA 692



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 154/304 (50%), Gaps = 6/304 (1%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
            LF+ + S GL P++  Y  ++    K GR      +LG +     +PD   + ++I G 
Sbjct: 463 ELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGF 522

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C   ++ E  +   ++ A G KP+V+TY   I+G CR G    A   F EM +     G+
Sbjct: 523 CKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDS----GI 578

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              P+ +  + + DG CK+G   KA   F  M D+ + PDV T++ LI G        EA
Sbjct: 579 A--PNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEA 636

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +F E++D+G+ P+V T+  +++ LCK G +  A  L + M + G+ P+   YN L++G
Sbjct: 637 MGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALING 696

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  G + +A+ELF  +   G  R+  +Y  +I GYCK+  +  A  L+  M   G+ P 
Sbjct: 697 LCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPD 756

Query: 338 VVTY 341
              Y
Sbjct: 757 SFVY 760



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 171/335 (51%), Gaps = 7/335 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+     P  V    I+ G L K   ++  + +   +   GL PD++ YN +I  F
Sbjct: 464 LFQEMISWGLKPNIVIYTTIVKG-LVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGF 522

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G++  G   L  ++     P+  T+ + I G C    +  A   F ++   G  P+ 
Sbjct: 523 CKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPND 582

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
              T LI+G C+ G+T  A   F  M +     GV+  PD  T+S +  GL K G + +A
Sbjct: 583 VICTDLIDGYCKDGNTTKAFAKFRCMLDQ----GVL--PDVQTHSVLIHGLSKNGKLQEA 636

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +F ++ D+ + PDV TYTSLI   C   D   A  L  +M  +G+ PN+VT+N ++N 
Sbjct: 637 MGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALING 696

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G++ +A  L + + + G+  ++  Y+T++ G+C +  +  A +LF  M+  G   D
Sbjct: 697 LCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPD 756

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            F Y  LI+G CK    E ALSL+  M+ +GI  T
Sbjct: 757 SFVYCALIDGCCKAGNTEKALSLFLGMVEEGIAST 791



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 146/295 (49%), Gaps = 6/295 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  P+L TY+++I   C+ G V     +   +      PD   + +LI G C + R  E 
Sbjct: 262 GCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEG 321

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
            ++  ++   G KPD   YT LING  +      A  + EEM      F    K +  TY
Sbjct: 322 KSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEM------FARKIKLNTFTY 375

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
             +  GLCK G ++KA++LF +M    I PD+ TY  LI G+    +  +A  L IE+  
Sbjct: 376 YALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKK 435

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           + +  N      I+N LC  G +  A+ L + MI  G++P+  +Y T++ G    GR   
Sbjct: 436 ENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEE 495

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           A ++   M+  G   DVF Y  +I G+CK  ++E   S   EM++KG++P V TY
Sbjct: 496 AIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTY 550



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 176/339 (51%), Gaps = 8/339 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  ML    +P  V   +++ G   K+ +     + F+ +   G+ PD+ T+++LI+   
Sbjct: 570 FIEMLDSGIAPNDVICTDLIDG-YCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLS 628

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G++     V   +L     PD  T+TSLI  LC E  +  A  L   +   G  P++ 
Sbjct: 629 KNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIV 688

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY  LINGLC+ G    A  LF+    G  E G+    +++TYSTI  G CK   + +A 
Sbjct: 689 TYNALINGLCKLGEIAKARELFD----GIPEKGLA--RNSVTYSTIIAGYCKSANLTEAF 742

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +LF  MK   + PD   Y +LI G C A +  +A  LF+ M+++G+  +   FN +++  
Sbjct: 743 QLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGF 801

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K GK+ EA +L+E M+   + P+   Y  L++  C  G +  A++LF+ M+    M +V
Sbjct: 802 FKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNV 861

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +Y  L++GY +        SL+ EM+++GI+P  + ++
Sbjct: 862 LTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWS 900



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 158/330 (47%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     K ++ +    L   +    L  + Y    ++N  C  G ++    +
Sbjct: 405 PDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANEL 464

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     P+ V +T+++KGL  E R  EA  +   ++  G  PDVF Y T+I G C+
Sbjct: 465 FQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCK 524

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G      +   EM A G        KP+  TY     G C+ G +  A+  F++M D  
Sbjct: 525 AGKMEEGKSYLVEMIAKG-------LKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSG 577

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I P+ V  T LI G+C   +  +A   F  M+DQGV P+V T +V+++ L KNGK+ EA 
Sbjct: 578 IAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAM 637

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +   ++  G+ PD   Y +L+   C  G +  A EL   M   G   ++ +Y  LING 
Sbjct: 638 GVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGL 697

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK  EI  A  L+  +  KG+    VTY+T
Sbjct: 698 CKLGEIAKARELFDGIPEKGLARNSVTYST 727



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 155/320 (48%), Gaps = 7/320 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + ++L   L+KN      + +F  L   GL PD++TY  LI+  CK G +   F +
Sbjct: 615 PDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFEL 674

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+ VT+ +LI GLC    I +A  LF  +   G   +  TY+T+I G C+
Sbjct: 675 HDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCK 734

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           + +   A  LF  M        V   PD+  Y  + DG CK G  +KA  LFL M +E I
Sbjct: 735 SANLTEAFQLFHGMKL------VGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI 788

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
                 + +LI GF       EA  L  +M+D  + PN VT+ +++   C  G + EA +
Sbjct: 789 -ASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQ 847

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M +  V P+   Y +L+ G+   GR +    LF  M + G   D  ++ ++++ + 
Sbjct: 848 LFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHL 907

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           K      AL L  +MLS+G+
Sbjct: 908 KEGNWIKALKLVDDMLSEGV 927



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 162/329 (49%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K         L   +   G+ P++ TYN LIN  CK+G ++    +
Sbjct: 650 PDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKAREL 709

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I       ++VT++++I G C  + + EA  LF  ++  G  PD F Y  LI+G C+
Sbjct: 710 FDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCK 769

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+T  AL+LF  M     E G+   P    ++ + DG  K G + +A +L   M D +I
Sbjct: 770 AGNTEKALSLFLGMV----EEGIASTP---AFNALIDGFFKLGKLIEAYQLVEDMVDNHI 822

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTYT LI   C   +  EA+ LF+EM  + V PNV+T+  +++   + G+  E   
Sbjct: 823 TPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFS 882

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+  G++PD   ++ ++D     G   +A +L   M S G       Y ILI+  C
Sbjct: 883 LFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALC 942

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+  +   L +  E+  +G + ++ T  T
Sbjct: 943 KHNNLSEVLKVLDEVEKQGSKLSLATCGT 971



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 170/365 (46%), Gaps = 41/365 (11%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SP   C   ++ G   K    +   S    + + GL P++YTY   I+ +C+ G +    
Sbjct: 509 SPDVFCYNTVIIG-FCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAE 567

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
                +L S   P+ V  T LI G C +    +A A F  +   G  PDV T++ LI+GL
Sbjct: 568 RSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGL 627

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            + G    A+ +F E+ +     G+V  PD  TY+++   LCKEG +  A EL   M  +
Sbjct: 628 SKNGKLQEAMGVFSELLDK----GLV--PDVFTYTSLISNLCKEGDLKAAFELHDDMCKK 681

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            INP++VTY +LI G C   +  +A+ LF  + ++G+  N VT++ I+   CK+  + EA
Sbjct: 682 GINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEA 741

Query: 253 SRLLELMIQIGVRPDASVY----------------------------------NTLMDGF 278
            +L   M  +GV PD+ VY                                  N L+DGF
Sbjct: 742 FQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGF 801

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
              G++  A +L   M  N    +  +Y ILI  +C    I+ A  L+ EM  + + P V
Sbjct: 802 FKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNV 861

Query: 339 VTYNT 343
           +TY +
Sbjct: 862 LTYTS 866



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 156/324 (48%), Gaps = 7/324 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F IL     K    +  +S+F    +      L   N L     K  RV   + V   +L
Sbjct: 166 FEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGML 225

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                PD  T+T+LI   C   ++ E   +   +   GC P++ TY+ +I GLCR G   
Sbjct: 226 -GAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVD 284

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL L   MAN     G++  PD   Y+T+ DG C++    + K +  +M    + PD V
Sbjct: 285 EALELKRSMANK----GLL--PDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHV 338

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            YT+LI GF   +D   A  +  EM  + ++ N  T+  +++ LCK G +++A  L   M
Sbjct: 339 AYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEM 398

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
             +G++PD   YN L++G+     + +A EL + ++      + +  G ++NG C   ++
Sbjct: 399 TMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDL 458

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A  L+ EM+S G++P +V Y T
Sbjct: 459 TRANELFQEMISWGLKPNIVIYTT 482



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 9/249 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP    +  L     K  + +  LSLF  +   G+      +N LI+ F K+G++   + 
Sbjct: 754 PPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGFFKLGKLIEAYQ 812

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++  ++ +  TP+ VT+T LI+  C    I EA  LF +++     P+V TYT+L++G  
Sbjct: 813 LVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYN 872

Query: 134 RTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           R G      +LF+EM A G        KPD + +S + D   KEG   KA +L   M  E
Sbjct: 873 RIGRRSEMFSLFDEMVARG-------IKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSE 925

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            +N     YT LI   C  N+ +E   +  E+  QG + ++ T   ++    + G+ DEA
Sbjct: 926 GVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEA 985

Query: 253 SRLLELMIQ 261
            R+LE M++
Sbjct: 986 LRVLESMVR 994


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 111/350 (31%), Positives = 179/350 (51%), Gaps = 14/350 (4%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +F+ MLR+   P  + +FN L   L K  H      L  ++   G+ P+L+T+NI I 
Sbjct: 201 YELFNKMLRLGIFPH-IATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQ 259

Query: 61  CFCKMG-------RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
             C+ G       +V      L +++     PD  T+ ++I G     +I +A+ +    
Sbjct: 260 GLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDA 319

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
           +  G  PD FTY +LI G+C+ G    AL LFEE A G G      KP  + Y+T+  GL
Sbjct: 320 KFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEE-ALGKG-----LKPSIVLYNTLIKGL 373

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
            ++G V KA +L   M  E ++PD+ TY  +I G C     ++A  L    + +G  P++
Sbjct: 374 SQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDI 433

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            TFN +++  CK  KMD A  +L+ M   GV PD   YN++++G C   +     E F  
Sbjct: 434 FTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKM 493

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   GC+ ++ +Y ILI   CK +++  AL L  E+ ++G+ P  V++ T
Sbjct: 494 IMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGT 543



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 179/342 (52%), Gaps = 20/342 (5%)

Query: 14  PPPVCSFNILFGCLAKNKHYDT-----VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           P   C  N +  C   +  Y+         LF ++  +G+FP + T+N L++  CK G +
Sbjct: 173 PSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHL 232

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLC-------AESRIMEAAALFTKLRAFGCKPD 121
             G  +L ++L++   P+  TF   I+GLC       A S+++EA     K+   G +PD
Sbjct: 233 QEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPD 292

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCKPDAITYSTITDGLCKEGFVD 180
            FTY T+I G  + G    A  + ++      +F G V  PD  TY ++  G+C++G +D
Sbjct: 293 DFTYNTIIYGYSKVGKIQDASRILKD-----AKFKGFV--PDEFTYCSLIIGVCQDGDID 345

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  LF +   + + P +V Y +LI+G        +A  L  +M  +G+ P++ T+N+++
Sbjct: 346 HALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVI 405

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N LCK G + +A+ LL   I  G  PD   +NTL+DG+C   +++ A  +  SM S+G  
Sbjct: 406 NGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVT 465

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            DV +Y  ++NG CK  + E  +  +  ++ KG  P ++TYN
Sbjct: 466 PDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYN 507



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 167/337 (49%), Gaps = 16/337 (4%)

Query: 15  PPVCSFNILFGCL--------AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           P + +FNI    L        A +K  +    L K +N  GL PD +TYN +I  + K+G
Sbjct: 249 PNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNK-GLEPDDFTYNTIIYGYSKVG 307

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++     +L       F PD  T+ SLI G+C +  I  A ALF +    G KP +  Y 
Sbjct: 308 KIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYN 367

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLI GL + G  + AL L  +M+           PD  TY+ + +GLCK G V  A  L 
Sbjct: 368 TLIKGLSQQGLVLKALQLMNDMSKEG------MSPDIWTYNLVINGLCKMGCVSDANNLL 421

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
                +   PD+ T+ +LI G+C     + A  +   M   GV P+V+T+N I+N LCK 
Sbjct: 422 NAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKA 481

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            K ++     +++++ G  P+   YN L++  C   +V  A +L   + + G + D  S+
Sbjct: 482 AKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSF 541

Query: 307 GILINGYCKNKEIEGALSLYSEMLSK-GIRPTVVTYN 342
           G +I+G+C N +++ A  L+  M  +  I  TV TYN
Sbjct: 542 GTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYN 578



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 172/371 (46%), Gaps = 48/371 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR------- 67
           P + S+N +   L +  +++    ++ R+   G+ PD+ T+ I I  FC+  R       
Sbjct: 109 PSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRL 168

Query: 68  ------------------VSPGFV----------VLGRILRSCFTPDAVTFTSLIKGLCA 99
                             V  GF           +  ++LR    P   TF  L+  LC 
Sbjct: 169 LNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCK 228

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG-------HTIVALNLFEEMANGN 152
           +  + E   L  K+   G  P++FT+   I GLCR G         + A N   +M N  
Sbjct: 229 KGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKG 288

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
            E      PD  TY+TI  G  K G +  A  +    K +   PD  TY SLI G C   
Sbjct: 289 LE------PDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDG 342

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           D + A  LF E + +G++P++V +N ++  L + G + +A +L+  M + G+ PD   YN
Sbjct: 343 DIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYN 402

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            +++G C  G V+ A  L  +  + G + D+F++  LI+GYCK  +++ A+ +   M S 
Sbjct: 403 LVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSH 462

Query: 333 GIRPTVVTYNT 343
           G+ P V+TYN+
Sbjct: 463 GVTPDVITYNS 473



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 161/327 (49%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L++       L L   ++  G+ PD++TYN++IN  CKMG VS    +
Sbjct: 361 PSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNL 420

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   +   + PD  TF +LI G C   ++  A  +   + + G  PDV TY +++NGLC+
Sbjct: 421 LNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCK 480

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  +  F+ +          C P+ ITY+ + + LCK   V +A +L  ++++  +
Sbjct: 481 AAKPEDVMETFKMIMEKG------CLPNIITYNILIESLCKARKVTEALDLLEEIRNRGL 534

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEAS 253
            PD V++ ++I GFC   D +EA  LF  M  Q  +   V T+N+++N   +   MD A 
Sbjct: 535 IPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQ 594

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L   M   G  PD+  Y  ++DGFC  G VN   +  +     G +  + ++G +IN  
Sbjct: 595 KLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCL 654

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
           C    +  A+ +   M+  G+ P  V 
Sbjct: 655 CVQHRVHEAVGIVHLMVRTGVVPEAVV 681



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 48/297 (16%)

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL---------------- 132
            + S ++    + ++ EA  +F ++  + C+P +F+Y  ++N L                
Sbjct: 78  VYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRM 137

Query: 133 -------------------CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
                              CRT   + AL L   M +        C+ +A+ Y T+  G 
Sbjct: 138 KHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQG------CELNAVVYCTVISGF 191

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
            +E +  +A ELF KM    I P + T+  L+   C      E + L  +++  GV PN+
Sbjct: 192 YEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNL 251

Query: 234 VTFNVIMNELCKNG-------KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            TFN+ +  LC+ G       K+ EA   L  M+  G+ PD   YNT++ G+   G++  
Sbjct: 252 FTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQD 311

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A  +    +  G + D F+Y  LI G C++ +I+ AL+L+ E L KG++P++V YNT
Sbjct: 312 ASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNT 368



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 8/234 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I D M   H   P V ++N +   L K    + V+  FK +   G  P++ TYNILI   
Sbjct: 455 ILDSMWS-HGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESL 513

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPD 121
           CK  +V+    +L  I      PD V+F ++I G C    + EA  LF ++ + +     
Sbjct: 514 CKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHT 573

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V TY  +IN         +A  LF EM +        C PD+ TY  + DG CK G V+ 
Sbjct: 574 VATYNIMINAFSEKLDMDMAQKLFHEMGDKG------CDPDSYTYRVMIDGFCKVGNVNS 627

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
             +  LK  +    P + T+  +I   C  +  +EA  +   M+  GV P  V 
Sbjct: 628 GYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVV 681



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASR-LLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + G +   +T+  ++ +L  +G+ D   R L+E+ + +       VY + M  +   G+V
Sbjct: 33  EDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLEGVYVSAMRNYGRKGKV 92

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             A ++F  M+   C   +FSY  ++N   +      A  +Y  M  +GI P V T+
Sbjct: 93  QEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTF 149


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 168/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K +++  V   +K +   G  P LY +NIL++ FCK G +    +V   I +    P 
Sbjct: 111 LMKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L + + A G +PDV+TY+ LINGLC+      A  +  
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLN 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  +   PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM+ +G++P+ +T+  +++  CK G ++    L + MI+  +R 
Sbjct: 285 GLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M + G   D  +Y +++N +CK  +++ A  L 
Sbjct: 345 DEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P VVT
Sbjct: 405 REMQRNGPVPGVVT 418



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 139/252 (55%), Gaps = 6/252 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     +    D    L   +++ G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEM 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L +   P+ VTFT+LI G C   ++  A  ++ ++ + G  PD+ TY TLI GLCR
Sbjct: 229 LNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCR 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L EEM           KPD ITY+T+ DG CKEG ++   EL  +M  ENI
Sbjct: 289 RGDLGQARDLVEEMIMKG------LKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENI 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D VTYT+LI G C      +A+ +  EM+  G++P+  T+ +IMNE CK G +  AS+
Sbjct: 343 RLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASK 402

Query: 255 LLELMIQIGVRP 266
           LL  M + G  P
Sbjct: 403 LLREMQRNGPVP 414



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 156/285 (54%), Gaps = 6/285 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP +  FNIL     K         +F  +    L P + ++N L+N + ++G +  GF 
Sbjct: 133 PPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  +   PD  T++ LI GLC ES++ EA  +  ++   G  P+  T+TTLI+G C
Sbjct: 193 LKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M +     G +  PD ITY+T+  GLC+ G + +A++L  +M  + 
Sbjct: 253 KNGKVDLAMEIYKQMLSQ----GFL--PDLITYNTLIYGLCRRGDLGQARDLVEEMIMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D      L   M+ + ++ + VT+  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++L  M+ +G++PD   Y  +M+ FC TG V  A +L   M+ NG
Sbjct: 367 KMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNG 411



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 133/266 (50%), Gaps = 8/266 (3%)

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           IL   + P    F  L+   C E  +  A  +F  +  +  +P V ++ TL+NG  R G 
Sbjct: 127 ILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGD 186

Query: 138 TIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
                 L   M A G        +PD  TYS + +GLCKE  +D+A E+  +M D  + P
Sbjct: 187 LDEGFRLKSAMHATG-------VQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVP 239

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VT+T+LI G C     + A  ++ +M+ QG  P+++T+N ++  LC+ G + +A  L+
Sbjct: 240 NGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLV 299

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E MI  G++PD   Y TL+DG C  G +    EL   M       D  +Y  LI+G C+ 
Sbjct: 300 EEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCRE 359

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
                A  +  EML+ G++P   TY 
Sbjct: 360 GRAGDAEKMLREMLTVGLKPDNGTYT 385



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 105/183 (57%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P    ++ +    CKEG +  A+ +F  +   ++ P VV++ +L+ G+    D +E   L
Sbjct: 134 PSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRL 193

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
              M   GVQP+V T++V++N LCK  KMDEA+ +L  M+  G+ P+   + TL+DG C 
Sbjct: 194 KSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCK 253

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G+V+ A E++  M S G + D+ +Y  LI G C+  ++  A  L  EM+ KG++P  +T
Sbjct: 254 NGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKIT 313

Query: 341 YNT 343
           Y T
Sbjct: 314 YTT 316



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVCK------PDAITY 166
           +  + +Y T+I+ LC     + A +L   + +  G+      F  + +       D   +
Sbjct: 10  RHTLHSYCTMIHFLCTHQMLVEAKSLIRVVVSRKGKDSTSAVFAAILETKGTQISDLYVF 69

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GFV  A + F   K   I     T   ++        +      + E+++
Sbjct: 70  SGLMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFYKEILE 129

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G  P++  FN++M+  CK G+M  A  + + + +  +RP    +NTLM+G+   G ++ 
Sbjct: 130 CGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDE 189

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M + G   DV++Y +LING CK  +++ A  + +EML  G+ P  VT+ T
Sbjct: 190 GFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTT 246



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 69/144 (47%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L +         L + +   GL PD  TY  LI+  CK G +   F +
Sbjct: 274 PDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFEL 333

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++R     D VT+T+LI GLC E R  +A  +  ++   G KPD  TYT ++N  C+
Sbjct: 334 RKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCK 393

Query: 135 TGHTIVALNLFEEMANGNGEFGVV 158
           TG    A  L  EM       GVV
Sbjct: 394 TGDVKTASKLLREMQRNGPVPGVV 417



 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 44/110 (40%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K    +    L KR+    +  D  TY  LI+  C+ GR      +
Sbjct: 309 PDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKM 368

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
           L  +L     PD  T+T ++   C    +  A+ L  +++  G  P V T
Sbjct: 369 LREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGVVT 418


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 168/344 (48%), Gaps = 21/344 (6%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP    + I+   L + K  D V  L   +   G  PD  T N L++ FCK+G++   F 
Sbjct: 233 PPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFA 292

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L    +  +      ++SLI GL    R  E      K+   G +PDV  YT LI G C
Sbjct: 293 LLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFC 352

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    ALN+  +M            PD   Y+ +  G C  G +DKA+ L L++   +
Sbjct: 353 EVGMVDYALNMLNDMTQRG------LSPDTYCYNALIKGFCDVGLLDKARSLQLEISKND 406

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P   TYT LI G C     +EA+ +F +M + G  P+++TFN +++ LCK G+++EA 
Sbjct: 407 CFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEAR 466

Query: 254 RLLELMIQIGVRP--------------DASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
            L   M +IG  P              D +   T+++  C +G + +A +L + +  +G 
Sbjct: 467 HLFYKM-EIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGV 525

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + D+ +Y +LING+CK K I GA  L+ E+  KG  P  VTY T
Sbjct: 526 VPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGT 569



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 168/330 (50%), Gaps = 8/330 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PPP  +F++L    AK+   +  +  F ++   G  PD++TYN +++   +         
Sbjct: 130 PPP--TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALA 187

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V  ++L+  + P+  TF  L+ GLC   +  +A  +F ++   G  P+   YT +++GLC
Sbjct: 188 VYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLC 247

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +   T     L   M          C PD+IT + + DG CK G +D+A  L    + E 
Sbjct: 248 QAKRTDDVHRLLNTMKVSG------CCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEG 301

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
               +  Y+SLI G   A  ++E +    +M   G++P+VV + +++   C+ G +D A 
Sbjct: 302 YVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYAL 361

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L  M Q G+ PD   YN L+ GFC  G +++A+ L + +  N C     +Y ILI G 
Sbjct: 362 NMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGM 421

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C+N  ++ A  ++++M + G  P+++T+N 
Sbjct: 422 CRNGLLDEARQIFNQMENLGCSPSIMTFNA 451



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 158/325 (48%), Gaps = 21/325 (6%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           ++ L   L + K YD V    +++   G+ PD+  Y ILI  FC++G V     +L  + 
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMT 368

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           +   +PD   + +LIKG C    + +A +L  ++    C P   TYT LI G+CR G   
Sbjct: 369 QRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLD 428

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP--- 196
            A  +F +M N      + C P  +T++ + DGLCK G +++A+ LF KM +   NP   
Sbjct: 429 EARQIFNQMEN------LGCSPSIMTFNALIDGLCKAGELEEARHLFYKM-EIGKNPSLF 481

Query: 197 -----------DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
                      D  +  +++   C +    +A  L +++ D GV P+++T+NV++N  CK
Sbjct: 482 LRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCK 541

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
              ++ A +L   +   G  PD+  Y TL+DGF    R   A  +   M  NGC      
Sbjct: 542 AKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAV 601

Query: 306 YGILINGYCKNKEIEGALSLYSEML 330
           Y  L+   C+  ++  A SL+ + L
Sbjct: 602 YKCLMTWSCRKGKLSVAFSLWLKYL 626



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 145/286 (50%), Gaps = 7/286 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  + IL     +    D  L++   +   GL PD Y YN LI  FC +G +     +
Sbjct: 339 PDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSL 398

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I ++   P + T+T LI G+C    + EA  +F ++   GC P + T+  LI+GLC+
Sbjct: 399 QLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCK 458

Query: 135 TGHTIVALNLFEEMANGNG-------EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
            G    A +LF +M  G           G     D  +  T+ + LC+ G + KA +L +
Sbjct: 459 AGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLM 518

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++ D  + PD++TY  LI GFC A + N A  LF E+  +G  P+ VT+  +++   +  
Sbjct: 519 QLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVD 578

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           + ++A R+L+ M++ G  P ++VY  LM   C  G+++ A  L++ 
Sbjct: 579 REEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLK 624



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 7/261 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
            L  +L   G+ PD+ TYN+LIN FCK   ++  F +   +     +PD+VT+ +LI G 
Sbjct: 515 KLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGF 574

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
               R  +A  +  ++   GC P    Y  L+   CR G   VA +L+ +         +
Sbjct: 575 HRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRS-----L 629

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
             + D      + +   ++G ++KA    L+M  +  N ++  YT  + G C A    EA
Sbjct: 630 PSQEDETL--KLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEA 687

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +F+ + +  +  N  +  +++N LCK+G ++ A  +    ++ G      + N L+  
Sbjct: 688 LKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRS 747

Query: 278 FCLTGRVNRAKELFVSMESNG 298
             L  ++  A +L   M S G
Sbjct: 748 LILQDKMKHALDLLNRMNSAG 768



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 91/197 (46%), Gaps = 35/197 (17%)

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +T++ + D L K+   D   ++  ++K+ NI     T++ LI  +  +    +A   F +
Sbjct: 97  VTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGK 156

Query: 224 MMDQGVQPNVVTFN-----------------------------------VIMNELCKNGK 248
           M D G +P+V T+N                                   +++N LCKNGK
Sbjct: 157 MKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
            D+A ++ + M Q G+ P+  +Y  ++ G C   R +    L  +M+ +GC  D  +   
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 309 LINGYCKNKEIEGALSL 325
           L++G+CK  +I+ A +L
Sbjct: 277 LLDGFCKLGQIDEAFAL 293


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 171/337 (50%), Gaps = 9/337 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR H  P  V + N +     + +H+       +  + +G+ PD  ++  L+   C+ GR
Sbjct: 139 LRSHGLPLVVETANWVLRVGLRQRHH--FAHARQAFDGMGVRPDARSFRALVLGCCQEGR 196

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 +L  + R  F+ D+ T T +++  C + R  +   LF ++   G  P+V  YT 
Sbjct: 197 FEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTA 256

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
            ++GLC+ G+   A ++ EEM  G G      KP+  T++++ DGLCK G+ ++A  LFL
Sbjct: 257 WVDGLCKRGYVKQAFHVLEEMV-GKG-----LKPNVYTHTSLIDGLCKIGWTERAFRLFL 310

Query: 188 KM-KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
           K+ K  +  P+V TYT +I G+C       A+ L   M++QG+ PN  T+  +++  C+ 
Sbjct: 311 KLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRG 370

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G  D A  L+  M   G  P+   YN ++ GFC  G++ +A ++     S G   D  +Y
Sbjct: 371 GSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTY 430

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +LI  +CK   I  AL L+++M      P + TY T
Sbjct: 431 TMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTT 467



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 172/330 (52%), Gaps = 7/330 (2%)

Query: 15  PPVCSFNIL-FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P   SF  L  GC  + + ++   +L   +   G   D  T  +++  FC+ GR      
Sbjct: 179 PDARSFRALVLGCCQEGR-FEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPG 237

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           + GR++     P+ V +T+ + GLC    + +A  +  ++   G KP+V+T+T+LI+GLC
Sbjct: 238 LFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T  A  LF ++   +       KP+  TY+ +  G CKEG + +A+ L  +M ++ 
Sbjct: 298 KIGWTERAFRLFLKLVKSSSY-----KPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQG 352

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+  TYT+LI G C    ++ A  L  +M  +G  PN+ T+N I+   CK GK+ +A 
Sbjct: 353 LAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAY 412

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           ++L +    G+ PD   Y  L+   C  G +  A +LF  M  N C  D+ +Y  +I  Y
Sbjct: 413 KVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMY 472

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C+ +++E +  L+ + LS G+ PT  TY +
Sbjct: 473 CQQRQMEQSQQLFDKCLSIGLVPTKQTYTS 502



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 172/339 (50%), Gaps = 8/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+ M  +PP V ++      L K  +      + + +   GL P++YT+  LI+  
Sbjct: 238 LFGRMVEM-GNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGL 296

Query: 63  CKMGRVSPGFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           CK+G     F +  ++++S  + P+  T+T +I G C E ++  A  L  ++   G  P+
Sbjct: 297 CKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 356

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TYTTLI+G CR G    A  L  +M       G +  P+  TY+ I  G CK+G + +
Sbjct: 357 TNTYTTLIDGHCRGGSFDRAFELMNKMKLE----GFL--PNIYTYNAIIGGFCKKGKIQQ 410

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A ++      + + PD VTYT LI   C       A  LF +M +    P++ T+  I+ 
Sbjct: 411 AYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIA 470

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             C+  +M+++ +L +  + IG+ P    Y +++ G+C  G+   A ++F  M  +GC+ 
Sbjct: 471 MYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLP 530

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           D  +YG LI+G CK   +E A +L+  ML K + P  VT
Sbjct: 531 DPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVT 569



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 131/266 (49%), Gaps = 6/266 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  +++     P V ++ ++ G   K         L  R+   GL P+  TY  LI+
Sbjct: 306 FRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLID 365

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ G     F ++ ++    F P+  T+ ++I G C + +I +A  +     + G  P
Sbjct: 366 GHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCP 425

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT LI   C+ GH   AL+LF +MA  +      C PD  TY+TI    C++  ++
Sbjct: 426 DKVTYTMLITEHCKQGHITYALDLFNQMAENS------CHPDIDTYTTIIAMYCQQRQME 479

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           ++++LF K     + P   TYTS+I G+C       A  +F  M+  G  P+ +T+  ++
Sbjct: 480 QSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALI 539

Query: 241 NELCKNGKMDEASRLLELMIQIGVRP 266
           + LCK  +++EA  L E M+   + P
Sbjct: 540 SGLCKESRLEEARALFETMLDKHMVP 565



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 153/320 (47%), Gaps = 27/320 (8%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           +A N+     L+LF+RL++    PDL     L+  +     +   FV  G +      P 
Sbjct: 67  VADNEGSAAALALFRRLST---RPDL---RHLMRLYATAATL---FVARGNL------PM 111

Query: 87  AVTFTSLIKGLCAES-RIMEAAALFTKLRAFGCKPDVFTYTTLIN-GLCRTGHTIVALNL 144
           A      +    AE+ R+ EA  +  +LR+ G    V T   ++  GL +  H   A   
Sbjct: 112 AHEAARAMVAAFAETNRLREATDMLLELRSHGLPLVVETANWVLRVGLRQRHHFAHARQA 171

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
           F+         G+  +PDA ++  +  G C+EG  ++A  L   M  E  + D  T T +
Sbjct: 172 FD---------GMGVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVV 222

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           +R FC    + +   LF  M++ G  PNVV +   ++ LCK G + +A  +LE M+  G+
Sbjct: 223 VRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGL 282

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           +P+   + +L+DG C  G   RA  LF+ + +S+    +V +Y ++I GYCK  ++  A 
Sbjct: 283 KPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAE 342

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            L   M+ +G+ P   TY T
Sbjct: 343 MLLGRMVEQGLAPNTNTYTT 362



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 139/320 (43%), Gaps = 10/320 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     +   +D    L  ++   G  P++YTYN +I  FCK G++   + V
Sbjct: 355 PNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKV 414

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L         PD VT+T LI   C +  I  A  LF ++    C PD+ TYTT+I   C+
Sbjct: 415 LRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQ 474

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 +  LF++  +     G+V  P   TY+++  G C+ G    A ++F +M     
Sbjct: 475 QRQMEQSQQLFDKCLS----IGLV--PTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGC 528

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +TY +LI G C  +   EA+ LF  M+D+ + P  VT   +  E C+  K   A  
Sbjct: 529 LPDPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVS 588

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ + +   R  A   + L+        ++ A     ++       D  +Y   IN  C
Sbjct: 589 FLDGLDK---RQQAHAADALVRKLSAVDNLDAASLFLKNVLDKHYAVDHATYTSFINS-C 644

Query: 315 KNKEIEGALSLYSEMLSKGI 334
                    S  SE +SK I
Sbjct: 645 YESNRYALASEISEKISKRI 664


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 174/360 (48%), Gaps = 32/360 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ IL    +     D  + L + + S G   +   +  L+   C  GRV      
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + + C  PD +T+T+L+  LC   +  EA  +  ++ A GC PD  T++TLI+GLC+
Sbjct: 67  FRAMAKDC-APDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125

Query: 135 TGHTIVALNLFEE-----MANGNGEF---------------------GVVCK----PDAI 164
            G    A  + E+     M N +  F                     GVV      P  +
Sbjct: 126 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL 185

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            ++ + +G CK   +D A +L   M ++   P+V T+T LI G C AN   EA+ L  +M
Sbjct: 186 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKM 245

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +  G  PNVVT++ ++N LCK G++D+A  L +LM +    P+   +N L+DG C   R+
Sbjct: 246 VTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRI 305

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT-VVTYNT 343
             A++L+  M   GC  D+ +Y  LI+G CK+ +++ A  L+  +   G+     VTY+T
Sbjct: 306 EEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYST 365



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 170/379 (44%), Gaps = 46/379 (12%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M R +  PP V + NIL   L K K  +    L+ R+   G  PD+ TYN LI+  
Sbjct: 276 LFQLMERRN-CPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGL 334

Query: 63  CKMGRVSP--------------------------GFVVLGRILRSC----------FTPD 86
           CK  +V                            G+  LGR+  +C          F+PD
Sbjct: 335 CKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPD 394

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
             T+TSLI   C  SR +E   L  ++ + G  P V T + ++ GL    HT  A+ LF+
Sbjct: 395 LATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFD 454

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK---ELFLKMKDENINPDVVTYTS 203
            MA         C  DA+ Y+ + +G+ +    +KA    E  +  +D   NP      +
Sbjct: 455 SMAARG------CTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDA 508

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+   C     ++AK L  +M ++G    V ++N +++ L +  + DEA+++ E M+  G
Sbjct: 509 LVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAG 568

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
             P+ S  N ++   C   +V+ A EL   M   GC  D+ +   LI GYCK+   + A 
Sbjct: 569 PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLAR 628

Query: 324 SLYSEMLSKGIRPTVVTYN 342
            L  EM   G+ P   T++
Sbjct: 629 KLLEEMTEAGLEPNDTTHD 647



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 133/262 (50%), Gaps = 43/262 (16%)

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           C P+ FTY  LI G    G   +A+ L EEM + NG  G     +A+ ++T+  GLC  G
Sbjct: 5   CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKS-NGFEG-----NAVVHTTLMKGLCDAG 58

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            V +A E F  M  ++  PDV+TYT+L+   C A  ++EA+ +  EM+ +G  P+ VTF+
Sbjct: 59  RVVEALEHFRAMA-KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFS 117

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGV--------------------------------- 264
            +++ LCK G  ++A R+LE +IQ G+                                 
Sbjct: 118 TLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIA 177

Query: 265 ---RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
               P   ++N +++GFC    ++ A +L   M   GC+ +VF++ ILI G CK   +  
Sbjct: 178 KGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGE 237

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A  L  +M++ G  P VVTY+T
Sbjct: 238 AQQLLEKMVTGGCSPNVVTYST 259



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 2/186 (1%)

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           +C P+  TY  +  G    G +D A +L  +MK      + V +T+L++G C A    EA
Sbjct: 4   ICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEA 63

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
              F   M +   P+V+T+  +++ LCK GK DEA  +L  MI  G  PD   ++TL+DG
Sbjct: 64  LEHF-RAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDG 122

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC-KNKEIEGALSLYSEMLSKGIRP 336
            C  G   +A  +   +   G      ++  +I   C K   +E A  +   +++KG  P
Sbjct: 123 LCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTP 182

Query: 337 TVVTYN 342
           TV+ +N
Sbjct: 183 TVLMFN 188


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 169/340 (49%), Gaps = 8/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD+          V S+N L   L K+ H      ++K L   G  P+L T+ ILI   C
Sbjct: 14  FDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNC 73

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G+ +     L  +      PD   F  LI GL  +    +A  LF  + +    PD+F
Sbjct: 74  KAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIF 133

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST-ITDGLCKEGFVDKA 182
           TY T+I+GLC++G+   A  L EEM    G+      PD +TY+T I  G+CK+G V++A
Sbjct: 134 TYNTVISGLCKSGNLEKARELLEEMIRRGGK----SAPDIVTYNTLINAGICKDGDVEEA 189

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+   MK     PDV+TY S+I   C A    EA  +   M      P++VTFN +++ 
Sbjct: 190 LEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTLLDG 246

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G +  A  +LE M +  + PD   Y  L++G C  G+V  A  L   +   G + D
Sbjct: 247 FCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD 306

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           V +Y  L++G CK+ EIE A  L  EM ++ I   +V+ N
Sbjct: 307 VIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSIN 346



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 173/341 (50%), Gaps = 21/341 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F IL     K       L   + L+   + PD+Y +N LI+   K G       +
Sbjct: 60  PNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKL 119

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK--PDVFTYTTLIN-G 131
              +  S   PD  T+ ++I GLC    + +A  L  ++   G K  PD+ TY TLIN G
Sbjct: 120 FENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAG 179

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           +C+ G    AL + + M            PD ITY++I   LC  G V +A E+   M  
Sbjct: 180 ICKDGDVEEALEILDGMKLAGP------APDVITYNSIIHALCVAGRVVEAAEILKTM-- 231

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
            + +PD+VT+ +L+ GFC A     A  +  EM  + + P+V+T+ +++N LC+ G++  
Sbjct: 232 -SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQV 290

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR---------AKELFVSMESNGCMRD 302
           A  LLE +++ G  PD   Y +L+DG C +G +           A+E+   M S   +  
Sbjct: 291 AFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPP 350

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +F+Y I++ G  K+  I  A+SL S+++++G  P VVTYNT
Sbjct: 351 LFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNT 391



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 157/300 (52%), Gaps = 12/300 (4%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G   D+++YN L++   K G       V   +L S  +P+ VTF  LI+G C   +   A
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRA 81

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
                 L  F   PDV+ +  LI+GL + G+   A+ LFE M +          PD  TY
Sbjct: 82  LEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSR------VNPDIFTY 135

Query: 167 STITDGLCKEGFVDKAKELFLKM--KDENINPDVVTYTSLIR-GFCYANDWNEAKCLFIE 223
           +T+  GLCK G ++KA+EL  +M  +     PD+VTY +LI  G C   D  EA  +   
Sbjct: 136 NTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDG 195

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M   G  P+V+T+N I++ LC  G++ EA+ +L+ M      PD   +NTL+DGFC  G 
Sbjct: 196 MKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGM 252

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + RA E+   M     + DV +Y IL+NG C+  +++ A  L  E++ +G  P V+ Y +
Sbjct: 253 LPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTS 312



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 171/345 (49%), Gaps = 9/345 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           I D M    P+P  +   +I+   C+A       V+   + L ++   PDL T+N L++ 
Sbjct: 192 ILDGMKLAGPAPDVITYNSIIHALCVAGR-----VVEAAEILKTMSCSPDLVTFNTLLDG 246

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FCK G +     VL  + R    PD +T+T L+ GLC   ++  A  L  ++   G  PD
Sbjct: 247 FCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD 306

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC---KPDAITYSTITDGLCKEGF 178
           V  YT+L++GLC++G    A  L +EM+       +V     P   TY+ +  GL K+G 
Sbjct: 307 VIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGS 366

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           + KA  L   +      PDVVTY +LI G C AN   EA  L  EM   G  PN VT   
Sbjct: 367 ISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGS 426

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++  LC+ G++D+A  L+  M +    P+  VY +L+DG C + R++ A  +  +M   G
Sbjct: 427 VVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQG 486

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              D F+Y  LI        +  A+++Y EM+++G  P   T  T
Sbjct: 487 VALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKT 531



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 140/312 (44%), Gaps = 50/312 (16%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +L+     P + +FN L     K       L + + +    + PD+ TY IL+N  C++G
Sbjct: 227 ILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVG 286

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA-------------------- 106
           +V   F +L  I+R  + PD + +TSL+ GLC    I EA                    
Sbjct: 287 QVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSIN 346

Query: 107 ------------------------AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
                                    +L + L A G  PDV TY TLI+GLC+      A 
Sbjct: 347 MVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREAC 406

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
           +L +EMA+      + C P+ +T  ++  GLC+ G VD A  L ++M  +   P+VV YT
Sbjct: 407 DLADEMAS------LGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYT 460

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           SLI G C ++  ++A  +   M  QGV  +   +  ++  +   G++ EA  + + M+  
Sbjct: 461 SLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVAR 520

Query: 263 GVRPDASVYNTL 274
           G  PD S   TL
Sbjct: 521 GFLPDGSTSKTL 532


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 162/326 (49%), Gaps = 6/326 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S+  +   LA +K  D    LF+ L + G  P++  Y  +I+   K GR+  G     
Sbjct: 108 VISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFE 167

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +  S   P   T+T +I GLC    + +A  +F ++   GC PD  TYTTLI+G  +  
Sbjct: 168 EMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKAS 227

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L + M     E      P A+TY +I  G CK   +++AKE+  +M++    P
Sbjct: 228 KMDEARKLLDVMLTKGPE------PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEP 281

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            +  +TSL+  +       EA  +  EM  +G  P+V+ +  +++ L   G++ EA  + 
Sbjct: 282 GLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVF 341

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + MI+ G  PDA  Y T++  F   G V  A E+   M  +G   D F+Y  L++GY K 
Sbjct: 342 DSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKL 401

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
           + ++ A  +Y  M++ GI+P  VT+N
Sbjct: 402 ERVDQAFGVYDRMVASGIKPNAVTFN 427



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 174/389 (44%), Gaps = 60/389 (15%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N +   LA     D     F  +   G  PD+  +  LI+ FCK G+   G  +
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 75  LGRILR---------------------------SCFTP----DAVTFTSLIKGLCAESRI 103
           L + L+                              TP    D +++T++IKGL    RI
Sbjct: 65  LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRI 124

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN-----GEFGVV 158
            EA  LF +L+  GC P+V  YT +I+GL + G     L  FEEM+  +       + VV
Sbjct: 125 DEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVV 184

Query: 159 ------------------------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                                   C PD ITY+T+ DG  K   +D+A++L   M  +  
Sbjct: 185 IDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGP 244

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P  VTY S++ GFC  +  NEAK +  +M ++G +P +  F  +++     G+ +EA +
Sbjct: 245 EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQ 304

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  M   G  PD  +Y +L+D    TGRV  A+ +F SM   GC  D  +YG +I  + 
Sbjct: 305 VLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFS 364

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +E A  +   M   G+ P    YN+
Sbjct: 365 KIGNVEAAGEILELMAKSGVGPDCFAYNS 393



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 155/330 (46%), Gaps = 7/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L    +K    D    L   + + G  P   TY  +++ FCK+  ++    V
Sbjct: 211 PDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEV 270

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      P    FTSL+    ++ R  EA  + T++ A GC PDV  YT+LI+ L  
Sbjct: 271 IAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFS 330

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    A ++F+ M          C PDA+TY TI     K G V+ A E+   M    +
Sbjct: 331 TGRVPEARHVFDSMIEKG------CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGV 384

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   Y SL+ G+      ++A  ++  M+  G++PN VTFNV+M+ L K+GK D A  
Sbjct: 385 GPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFS 444

Query: 255 LLELMIQIG-VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           L + M++   V P    Y  L+DG    GRV+ A   F  M   G + +  +Y  LI   
Sbjct: 445 LFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSL 504

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K   I  A  L  +M+  G+ P V  Y+ 
Sbjct: 505 AKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 534



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 160/341 (46%), Gaps = 31/341 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML   P P  V   +I+ G   K    +    +  ++   G  P L+ +  L++ +
Sbjct: 235 LLDVMLTKGPEPTAVTYGSIVHG-FCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 293

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              GR    + VL  +      PD + +TSLI  L +  R+ EA  +F  +   GC PD 
Sbjct: 294 LSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 353

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANG----------------------NGEFGVV-- 158
            TY T+I    + G+   A  + E MA                        +  FGV   
Sbjct: 354 LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDR 413

Query: 159 -----CKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYAN 212
                 KP+A+T++ +  GL K+G  D+A  LF +M + E + P +V+YT LI G   A 
Sbjct: 414 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAG 473

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             +EA   F EM+D+G+ P   T+  ++  L K G++ EA +L+E M+++GV PD   Y+
Sbjct: 474 RVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYS 533

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L+ G   +  V+ A ++F  M   GC  +  +Y +L  G+
Sbjct: 534 ALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 574



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 155/331 (46%), Gaps = 41/331 (12%)

Query: 46  IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME 105
           +G  P + +YN +I+    + ++   +     ++ +   PD + FT+LI G C   +   
Sbjct: 1   MGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 60

Query: 106 AAALFTK-LRAFGCKPDVFTYTTLINGLCRTG--------------------HTIV---- 140
              L  + L+ F  +PDVF YT++I+G C+ G                    +T V    
Sbjct: 61  GHKLLNQALKRF--RPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGL 118

Query: 141 --------ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
                   A  LFEE+          C P+ + Y+ + DGL K G ++   + F +M   
Sbjct: 119 ADSKRIDEACELFEELKTAG------CSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGS 172

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           +  P   TYT +I G C A    +A  +F +M+ +G  P+ +T+  +++   K  KMDEA
Sbjct: 173 SCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEA 232

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +LL++M+  G  P A  Y +++ GFC    +N AKE+   M   GC   +F +  L++ 
Sbjct: 233 RKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSY 292

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y      E A  + +EM ++G  P V+ Y +
Sbjct: 293 YLSKGRAEEAYQVLTEMTARGCAPDVILYTS 323



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 5/270 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  L   L           +F  +   G  PD  TY  +I  F K+G V     +
Sbjct: 316 PDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEI 375

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +S   PD   + SL+ G     R+ +A  ++ ++ A G KP+  T+  L++GL +
Sbjct: 376 LELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFK 435

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A +LF+EM            P  ++Y+ + DGL K G V +A   F +M D  I
Sbjct: 436 DGKTDRAFSLFKEMLEKEE-----VPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGI 490

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TYTSLI     A    EAK L  +M+  GV P+V  ++ ++  L  +  +D A  
Sbjct: 491 IPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWD 550

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + + M++ G  P+   Y  L  GF   GR 
Sbjct: 551 VFQEMMKRGCAPNEVTYKVLRRGFRAAGRA 580



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ML     PP + S+ IL   L K          F+ +   G+ P+ +TY  LI 
Sbjct: 443 FSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIY 502

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K GR+     ++  +++    PD   +++LI GL   S +  A  +F ++   GC P
Sbjct: 503 SLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAP 562

Query: 121 DVFTYTTLINGLCRTGHTI 139
           +  TY  L  G    G  +
Sbjct: 563 NEVTYKVLRRGFRAAGRAL 581


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 173/336 (51%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K +++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G++  P+ +T++T+  G CK G VD A E++
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVK----GLI--PNGVTFTTLIXGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M  +++ PD++TY +LI G C   D  +A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 271 KXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A +  + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D+ +Y
Sbjct: 331 GDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYN 426



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 162/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ +++ M + +        PD ITY+T+  GLCK+G + +A  L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKXMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D + A      M+   ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +L   M+ NG +  V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 98/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D +E   L   M+  GVQP+V
Sbjct: 153 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDV 212

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+ G C  GRV+ A E++  
Sbjct: 213 YTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKX 272

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P   TY T
Sbjct: 273 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTT 322



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 113/237 (47%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +
Sbjct: 16  RHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFATILETKGTQRSDIYVF 75

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++  +     T   ++        +      + E+++
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILE 135

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++ 
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTT 252


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 167/314 (53%), Gaps = 6/314 (1%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           ++   D    ++  +   G+ P + TYN +++ FCK G+V     +L ++ +    P+ V
Sbjct: 167 RDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDV 226

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           T+  L+ GL     + +A  L  ++   G +   +TY  LI G C  G    A  L EEM
Sbjct: 227 TYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEM 286

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
            +     G V  P  +TY+TI  GLCK G V  A++L   M ++N+ PD+V+Y +LI G+
Sbjct: 287 LSR----GAV--PTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGY 340

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
               +  EA  LF E+  +G+ P+VVT+N +++ LC+ G +D A RL + MI+ G  PD 
Sbjct: 341 TRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDV 400

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             +  L+ GFC  G +  AKELF  M + G   D F+Y   I G  K  +   A  +  E
Sbjct: 401 FTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEE 460

Query: 329 MLSKGIRPTVVTYN 342
           ML++G  P ++TYN
Sbjct: 461 MLARGFPPDLITYN 474



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 167/330 (50%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N L     +  +      LF  L   GL P + TYN LI+  C+MG +     +
Sbjct: 328 PDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRL 387

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    PD  TFT L++G C    +  A  LF ++   G +PD F Y T I G  +
Sbjct: 388 KDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELK 447

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G    A  + EEM A G         PD ITY+   DGL K G + +A EL  KM    
Sbjct: 448 LGDPSKAFGMQEEMLARG-------FPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNG 500

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD VTYTS+I     A    +A+ +F+EM+ +G+ P+VVT+ V+++     G++  A 
Sbjct: 501 LVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAI 560

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
                M + GV P+   YN L++G C   ++++A + F  M++ G   + ++Y ILIN  
Sbjct: 561 LHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINEN 620

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C     + AL LY +ML + I+P   T++ 
Sbjct: 621 CNLGHWQEALRLYKDMLDREIQPDSCTHSA 650



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 165/362 (45%), Gaps = 41/362 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +     K       L L  ++  +G  P+  TYN+L+N     G +     +
Sbjct: 188 PTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKEL 247

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +LR      A T+  LI+G C + ++ EA+ L  ++ + G  P + TY T++ GLC+
Sbjct: 248 IQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCK 307

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L + M N N        PD ++Y+T+  G  + G + +A  LF +++   +
Sbjct: 308 WGRVSDARKLLDVMVNKN------LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGL 361

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VVTY +LI G C   D + A  L  EM+  G  P+V TF +++   CK G +  A  
Sbjct: 362 VPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKE 421

Query: 255 LLELMIQIGVRPDA-----------------------------------SVYNTLMDGFC 279
           L + M+  G++PD                                      YN  +DG  
Sbjct: 422 LFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLH 481

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +  A EL   M  NG + D  +Y  +I+ +     +  A +++ EMLSKGI P+VV
Sbjct: 482 KLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVV 541

Query: 340 TY 341
           TY
Sbjct: 542 TY 543



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 134/279 (48%), Gaps = 41/279 (14%)

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
           +S I  A  ++  +   G +P V TY T+++  C+ G    AL L  +M        + C
Sbjct: 168 DSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQK------MGC 221

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            P+ +TY+ + +GL   G +++AKEL  +M    +     TY  LIRG+C     +EA  
Sbjct: 222 LPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASR 281

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD------------ 267
           L  EM+ +G  P +VT+N IM  LCK G++ +A +LL++M+   + PD            
Sbjct: 282 LGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYT 341

Query: 268 -----------------------ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
                                     YNTL+DG C  G ++ A  L   M  +G   DVF
Sbjct: 342 RLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVF 401

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ IL+ G+CK   +  A  L+ EML++G++P    Y T
Sbjct: 402 TFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYIT 440



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 156/293 (53%), Gaps = 8/293 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFT--PDAVTFTSLIKGLCAESRIMEAAAL-F 110
           TY ++++   + G +   + V+ +++          V    L+  + A+  ++E   L F
Sbjct: 83  TYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLILDLLLWIYAKKSMLEKCLLVF 142

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            K+ + G  PD+     ++  L     +I   ++  E+ N   E G+  +P  +TY+T+ 
Sbjct: 143 YKMVSKGMLPDLKNCNRVLRLLRDRDSSI---DVAREVYNVMVECGI--RPTVVTYNTML 197

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           D  CK+G V +A +L L+M+     P+ VTY  L+ G  ++ +  +AK L  EM+  G++
Sbjct: 198 DSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLE 257

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            +  T++ ++   C+ G++DEASRL E M+  G  P    YNT+M G C  GRV+ A++L
Sbjct: 258 VSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKL 317

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M +   M D+ SY  LI GY +   I  A  L++E+  +G+ P+VVTYNT
Sbjct: 318 LDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNT 370



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 117/217 (53%), Gaps = 7/217 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PDL TYN+ I+   K+G +     ++ ++L +   PD VT+TS+I        + +A
Sbjct: 465 GFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKA 524

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
            A+F ++ + G  P V TYT LI+     G   +A+  F EM     E GV   P+ ITY
Sbjct: 525 RAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMH----EKGV--HPNVITY 578

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + + +GLCK   +D+A + F +M+ + I+P+  TYT LI   C    W EA  L+ +M+D
Sbjct: 579 NALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLD 638

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           + +QP+  T + ++  L K+ K     R LE +I  G
Sbjct: 639 REIQPDSCTHSALLKHLNKDYK-SHVVRHLENVIAAG 674



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 60/137 (43%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L    A        +  F  ++  G+ P++ TYN LIN  CK+ ++   +  
Sbjct: 538 PSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKF 597

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     +P+  T+T LI   C      EA  L+  +     +PD  T++ L+  L +
Sbjct: 598 FTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHLNK 657

Query: 135 TGHTIVALNLFEEMANG 151
              + V  +L   +A G
Sbjct: 658 DYKSHVVRHLENVIAAG 674


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 183/378 (48%), Gaps = 45/378 (11%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F   LR   SP  + +FNI+   L K         + K + + GL P + TYN +I+ +C
Sbjct: 173 FKAALRRRVSPD-LFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYC 231

Query: 64  KMGRVSPGFVV---LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           K GR    + V   L  ++ +  +P+ VTF  L+ G C +S    A  +F +++  G   
Sbjct: 232 KRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAA 291

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            V TY+ L+ GLC  G     + L +EM     + G+V  P+  T +++ +G CK+G + 
Sbjct: 292 SVVTYSALVWGLCSEGKVEEGVKLVDEMK----DLGLV--PNLATLNSVLNGFCKKGMMT 345

Query: 181 KAKELFLKMKDENINPDVVTYT-----------------------------------SLI 205
            A+     M+ +N+ P+VVTYT                                    LI
Sbjct: 346 DAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLI 405

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            GF    DW     L  EM  +GV+ ++VT+NV++  LC  G++ +A +LL+ M+ +G+ 
Sbjct: 406 AGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLE 465

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           P    YNT+++G+C  G +  A E+   ME      +V +Y + I   C+  ++E    L
Sbjct: 466 PVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNEL 525

Query: 326 YSEMLSKGIRPTVVTYNT 343
            +EML KG+ P  VTY+T
Sbjct: 526 LNEMLEKGLVPNGVTYDT 543



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 164/337 (48%), Gaps = 10/337 (2%)

Query: 11  HPSPPPVC-SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           HP   P   S N L   L   +  D     FK      + PDL+T+NI+I+  CK G++ 
Sbjct: 143 HPRHRPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLR 202

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR---IMEAAALFTKLRAFGCKPDVFTYT 126
               V   I      P  VT+ ++I G C   R   +    AL  ++   G  P+  T+ 
Sbjct: 203 KAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFN 262

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            L+NG C+  +T  A+ +FEEM     + G+      +TYS +  GLC EG V++  +L 
Sbjct: 263 VLVNGYCKDSNTAAAVRVFEEMK----QQGIAA--SVVTYSALVWGLCSEGKVEEGVKLV 316

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +MKD  + P++ T  S++ GFC      +A+     M  + V+PNVVT+ ++++   + 
Sbjct: 317 DEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRL 376

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            KM +A  + E M   GVRP+A +YN L+ GF   G       L   M   G   D+ +Y
Sbjct: 377 DKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTY 436

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +LI   C   E+  A+ L  EML  G+ P  +TYNT
Sbjct: 437 NVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNT 473



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 127/266 (47%), Gaps = 6/266 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +++ L   L      +  + L   +  +GL P+L T N ++N FCK G ++     + 
Sbjct: 293 VVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWID 352

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + +    P+ VT+T L+ G     ++ +A A+   +   G +P+   Y  LI G  R G
Sbjct: 353 SMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNG 412

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
                  L +EM           + D +TY+ +   LC +G V KA +L  +M    + P
Sbjct: 413 DWRSVSGLLDEMRMKG------VRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEP 466

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
             +TY ++I G+C   +   A  +   M     + NVVT+NV +  LC+ GKM+E + LL
Sbjct: 467 VHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELL 526

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTG 282
             M++ G+ P+   Y+T+ +G    G
Sbjct: 527 NEMLEKGLVPNGVTYDTIKEGMMEKG 552



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 60/131 (45%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +RM      + ++N+L G L         + L   +  +GL P   TYN +IN +C+ G 
Sbjct: 424 MRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGN 483

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +   + +  R+ +     + VT+   IK LC   ++ E   L  ++   G  P+  TY T
Sbjct: 484 IKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDT 543

Query: 128 LINGLCRTGHT 138
           +  G+   G+T
Sbjct: 544 IKEGMMEKGYT 554


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 174/343 (50%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D M+  H   P   ++N+L   L +        +L   + S  + PD +TY+IL +
Sbjct: 251 FSLRDQMV-CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 309

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              + G       + G+ L++  T    T + L+ GLC + ++  A  +   L   G  P
Sbjct: 310 GLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 369

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               Y TLING C+TG    A + F +M + +       KPD ITY+ + +GLCK   + 
Sbjct: 370 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRH------IKPDHITYNALINGLCKAERIT 423

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A++L ++M+D  +NP V T+ +LI  +       +   +  EM + G++PNVV++  I+
Sbjct: 424 NAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIV 483

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N  CKNGK+ EA  +L+ M    V P+A VYN ++D +   G  ++A  L   M+SNG  
Sbjct: 484 NAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGIS 543

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             + +Y +LI G C   +I  A  + + + +  + P  V+YNT
Sbjct: 544 PSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNT 586



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 172/338 (50%), Gaps = 8/338 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M R    PP   S+N++   + +       + +F  +    + P+  TYN +I+   K G
Sbjct: 186 MGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGG 245

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +  GF +  +++     P+A+T+  L+ GLC   R+ E +AL  ++ +    PD FTY+
Sbjct: 246 DLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYS 305

Query: 127 TLINGLCRTGHTIVALNLF-EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            L +GL R G +   L+LF + + NG       C       S + +GLCK+G V  A+E+
Sbjct: 306 ILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTC-------SILLNGLCKDGKVSIAEEV 358

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
              + +  + P  V Y +LI G+C   +   A   F +M  + ++P+ +T+N ++N LCK
Sbjct: 359 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 418

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
             ++  A  LL  M   GV P    +NTL+D +  TG++ +   +   M+ NG   +V S
Sbjct: 419 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 478

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           YG ++N +CKN +I  A+++  +M  K + P    YN 
Sbjct: 479 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNA 516



 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 168/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ILF  L++N     +LSLF +    G+    YT +IL+N  CK G+VS    V
Sbjct: 299 PDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 358

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   P  V + +LI G C    +  A + F ++++   KPD  TY  LINGLC+
Sbjct: 359 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 418

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A +L  EM + NG       P   T++T+ D   + G ++K   +  +M++  +
Sbjct: 419 AERITNAQDLLMEMQD-NG-----VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 472

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV+Y S++  FC      EA  +  +M  + V PN   +N I++   ++G  D+A  
Sbjct: 473 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 532

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M   G+ P    YN L+ G C   +++ A+E+  S+ ++  + D  SY  LI+  C
Sbjct: 533 LVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACC 592

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               I+ AL L   M   GI+ TV TY+
Sbjct: 593 YRGNIDKALDLQQRMHKYGIKSTVRTYH 620



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 154/317 (48%), Gaps = 14/317 (4%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS-CFTPDAVT 89
           +H D V   F  L S G  PD + +N  +      G +     +L R+ R     P+A +
Sbjct: 140 RHAD-VRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFS 198

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           +  +I G+    R  +A  +F ++      P+  TY T+I+G  + G      +L ++M 
Sbjct: 199 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQM- 257

Query: 150 NGNGEFGVVC---KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
                   VC   KP+AITY+ +  GLC+ G + +   L  +M  + + PD  TY+ L  
Sbjct: 258 --------VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 309

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G     D      LF + +  GV     T ++++N LCK+GK+  A  +L+ ++  G+ P
Sbjct: 310 GLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 369

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
              +YNTL++G+C TG +  A   F  M+S     D  +Y  LING CK + I  A  L 
Sbjct: 370 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 429

Query: 327 SEMLSKGIRPTVVTYNT 343
            EM   G+ PTV T+NT
Sbjct: 430 MEMQDNGVNPTVETFNT 446



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 150/341 (43%), Gaps = 29/341 (8%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +IL   L K+        + + L + GL P    YN LIN +C+ G +   F   G++  
Sbjct: 340 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 399

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD +T+ +LI GLC   RI  A  L  +++  G  P V T+ TLI+   RTG    
Sbjct: 400 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 459

Query: 141 ALNLFEEMANGNGEFGVV---------CK--------------------PDAITYSTITD 171
              +  EM     +  VV         CK                    P+A  Y+ I D
Sbjct: 460 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 519

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + G  D+A  L  KMK   I+P +VTY  LI+G C  +  +EA+ +   + +  + P
Sbjct: 520 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 579

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           + V++N +++  C  G +D+A  L + M + G++     Y+ L+ G    GR+   + L+
Sbjct: 580 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLY 639

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
             M  N  +     + I++  Y K      A  L  EML K
Sbjct: 640 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 680



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 144/296 (48%), Gaps = 7/296 (2%)

Query: 49  FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108
            P L + N+L+     +GR +      G +  +   PD   +   ++   A   + EA  
Sbjct: 122 LPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVG 181

Query: 109 LFTKLRAFGCKP-DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
           +  ++   G  P + F+Y  +I G+ R G    A+ +F+EM     E  V+  P+ ITY+
Sbjct: 182 MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMT----ERAVL--PNHITYN 235

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           T+ DG  K G ++    L  +M    + P+ +TY  L+ G C A    E   L  EM  Q
Sbjct: 236 TMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQ 295

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
            + P+  T++++ + L +NG       L    ++ GV       + L++G C  G+V+ A
Sbjct: 296 KMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIA 355

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +E+  S+ + G +     Y  LINGYC+  E+EGA S + +M S+ I+P  +TYN 
Sbjct: 356 EEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNA 411



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 6/183 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N +     ++   D    L +++ S G+ P + TYN+LI   C   ++S    +
Sbjct: 509 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 568

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PDAV++ +LI   C    I +A  L  ++  +G K  V TY  LI+GL  
Sbjct: 569 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 628

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  I    L+++M   N    VV  P    ++ + +   K G   KA++L  +M  +  
Sbjct: 629 AGRLIEMEYLYQKMMQNN----VV--PSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRN 682

Query: 195 NPD 197
           N D
Sbjct: 683 NHD 685


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 161/293 (54%), Gaps = 6/293 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PDL TYN LIN FC  G V     +L + +R    P+ +T+T L+ G C +    +A   
Sbjct: 346 PDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDY 405

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             ++   G + D+ +Y  LI+GL   G    AL + + M N     G++  PDA  Y+ +
Sbjct: 406 LIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNR----GIL--PDANIYNVL 459

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            +GL K+G +  AK +  +M D+NI PD   Y +L+ GF    + +EAK LF  ++++G+
Sbjct: 460 MNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGL 519

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            P VV +NV++    K+G MD A   ++ M +    PD   ++T++DG+     +N   +
Sbjct: 520 DPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLK 579

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +F  M    C  +V +Y  LINGYC+  E + A  L+S M S G++P+VVTY+
Sbjct: 580 IFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYS 632



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 185/374 (49%), Gaps = 35/374 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFK----RLNSIGLFPDLYTYNIL 58
           ++  ++++H S P   + N L   L K++  +T   L+     R N   +  D YT +I+
Sbjct: 155 VYHGVVKLHNSLPSTYACNSLLNLLVKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIM 214

Query: 59  INCFCKMGRVSPGF-VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           +   C  GR+  G  ++  R  + C  P+ V + +LI G C +  +  A  LF KL+  G
Sbjct: 215 VKGLCLKGRIEDGIKLIESRWGKGC-VPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKG 273

Query: 118 CKPDVFTYTTLINGLCRTGH---------------TIVALNLFEEMANGNGEFGV----- 157
             P + T+ +L+NG C+ G                  V + ++  + +   + G      
Sbjct: 274 FIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAK 333

Query: 158 ---------VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                     C+PD +TY+T+ +  C  G V++A++L  +     + P+ +TYT L+ G+
Sbjct: 334 DTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGY 393

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C   ++ +A    IEM   G++ +++++  +++ L   G++D A  + + M+  G+ PDA
Sbjct: 394 CKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDA 453

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
           ++YN LM+G    G+++ AK +   M       D F Y  L++G+ ++  ++ A  L+  
Sbjct: 454 NIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQL 513

Query: 329 MLSKGIRPTVVTYN 342
           ++ KG+ P VV YN
Sbjct: 514 IIEKGLDPGVVGYN 527



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 161/364 (44%), Gaps = 41/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG-------- 66
           P +  +N L     K    ++   LFK+L   G  P L T+  L+N FCKMG        
Sbjct: 241 PNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLL 300

Query: 67  ----------------------RVSPGFVV-----LGRILRSCFTPDAVTFTSLIKGLCA 99
                                 R   GF +     L  +  +C  PD VT+ +LI   C+
Sbjct: 301 LLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCS 360

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
              + EA  L  +    G  P+  TYT L++G C+ G    A +   EM+    E     
Sbjct: 361 RGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEV---- 416

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
             D I+Y  +  GL   G VD A  +  +M +  I PD   Y  L+ G       + AK 
Sbjct: 417 --DMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKV 474

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +  EM+DQ + P+   +  +++   ++G +DEA +L +L+I+ G+ P    YN ++ GF 
Sbjct: 475 MLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFS 534

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            +G ++ A      M     + D+F++  +I+GY K   +   L ++  M+ +  +P VV
Sbjct: 535 KSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVV 594

Query: 340 TYNT 343
           TY +
Sbjct: 595 TYTS 598



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 171/353 (48%), Gaps = 22/353 (6%)

Query: 5   DYMLRMHPSPPPV--CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           DY++ M  S   V   S+  L   L      DT L++  R+ + G+ PD   YN+L+N  
Sbjct: 404 DYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGL 463

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G++S   V+L  +L     PDA  + +L+ G      + EA  LF  +   G  P V
Sbjct: 464 FKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGV 523

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  +I G  ++G    A+   ++M   +        PD  T+STI DG  K+  ++  
Sbjct: 524 VGYNVMIKGFSKSGMMDNAILCIDKMRRAHH------VPDIFTFSTIIDGYVKQHNMNAV 577

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++F  M  +N  P+VVTYTSLI G+C   +   A+ LF  M   G++P+VVT+++++  
Sbjct: 578 LKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGS 637

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE------------- 289
            CK  K+ +A    ELM+     P+ + ++ L++GF  T     ++E             
Sbjct: 638 FCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFE 697

Query: 290 -LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             F  M  +G  +   +Y  ++   C+ + ++ AL L ++ML+ G+    V++
Sbjct: 698 DFFSRMIGDGWTQKAAAYNCILICLCQQRMVKTALQLRNKMLAFGLCSDAVSF 750



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 139/336 (41%), Gaps = 20/336 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +  L     ++ + D    LF+ +   GL P +  YN++I  F K G +    + 
Sbjct: 486 PDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILC 545

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++ R+   PD  TF+++I G   +  +     +F  +    CKP+V TYT+LING CR
Sbjct: 546 IDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCR 605

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T +A  LF  M +         KP  +TYS +    CKE  + KA   F  M     
Sbjct: 606 KGETKMAEKLFSMMRSHG------LKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINKC 659

Query: 195 NPDVVTYTSLIRGFC--------------YANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            P+   +  L+ GF               + N  +  +  F  M+  G       +N I+
Sbjct: 660 TPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFFSRMIGDGWTQKAAAYNCIL 719

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LC+   +  A +L   M+  G+  DA  +  L+ G CL G     + +     + G +
Sbjct: 720 ICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGICLEGNSKEWRNMISCDLNEGEL 779

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           +    Y + ++ +     I  A  +   M+   + P
Sbjct: 780 QIALKYSLELDKFIPEGGISEASGILQAMIKGYVSP 815



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 43/301 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N++    +K+   D  +    ++      PD++T++ +I+ + K   ++    +
Sbjct: 521 PGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKI 580

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G +++    P+ VT+TSLI G C +     A  LF+ +R+ G KP V TY+ LI   C+
Sbjct: 581 FGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCK 640

Query: 135 TGHTIVALNLFEEM---------------ANG--NGEFGVVCK----------------- 160
                 A++ FE M                NG  N +   V +                 
Sbjct: 641 EAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFF 700

Query: 161 ---------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                      A  Y+ I   LC++  V  A +L  KM    +  D V++ +LI G C  
Sbjct: 701 SRMIGDGWTQKAAAYNCILICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGICLE 760

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            +  E + +    +++G     + +++ +++    G + EAS +L+ MI+  V P+  + 
Sbjct: 761 GNSKEWRNMISCDLNEGELQIALKYSLELDKFIPEGGISEASGILQAMIKGYVSPNQDLN 820

Query: 272 N 272
           N
Sbjct: 821 N 821



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 8/186 (4%)

Query: 165 TYSTITDGLCKE---GFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           T   ++D LC     G VDKA E++  + K  N  P      SL+           A  L
Sbjct: 132 TREALSDVLCAYADVGLVDKALEVYHGVVKLHNSLPSTYACNSLLNLLVKHRRIETAHQL 191

Query: 221 FIEMMDQGVQPNV----VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           + EM+D+    ++     T ++++  LC  G++++  +L+E     G  P+   YNTL+D
Sbjct: 192 YDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKGCVPNIVFYNTLID 251

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G+C  G V  A +LF  ++  G +  + ++G L+NG+CK    E    L  EM  +G+  
Sbjct: 252 GYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRGLSV 311

Query: 337 TVVTYN 342
            V  YN
Sbjct: 312 NVQMYN 317



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 4/117 (3%)

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN----TLMDGFCLTGRVNR 286
           P+    N ++N L K+ +++ A +L + MI      D  V N     ++ G CL GR+  
Sbjct: 167 PSTYACNSLLNLLVKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIED 226

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +L  S    GC+ ++  Y  LI+GYCK  E+E A  L+ ++  KG  PT+ T+ +
Sbjct: 227 GIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGS 283


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 177/331 (53%), Gaps = 9/331 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P PV +FN+L   L+KN        L   +   G  P+  TYN LI+  C  G++     
Sbjct: 266 PNPV-TFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALS 324

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L +++ S   P+ VT+ ++I GL  + R  +   +   +   G K + + Y++LI+GL 
Sbjct: 325 LLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLF 384

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G +  A+ L++EMA         CKP+ + Y    DGLC++   D+A+++  +M  + 
Sbjct: 385 KEGKSENAVRLWKEMAEKG------CKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKG 438

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+  TY+SL++GF    D  +A  ++ EMM Q ++ NVV  +V++N LC++G++ EA 
Sbjct: 439 FLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREAL 498

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN--GCMRDVFSYGILIN 311
            +   M+  G++PD   Y++++ G C  G V++  +LF  M+        DV +Y IL N
Sbjct: 499 TVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFN 558

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             C+   +  A+ L + ML +G  P  +T N
Sbjct: 559 ALCRQDNLTRAIDLLNSMLDEGCDPDSLTCN 589



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N++   L K    D  +  F+ +      PD++TY+ L+N  CK  RV     +
Sbjct: 196 PNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFL 255

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ VTF  LI  L     +  AA L   +   GC P+  TY TLI+GLC 
Sbjct: 256 LDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCL 315

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL+L E+M +        C P+ +TY TI +GL K+   +    + + M++   
Sbjct: 316 KGKLDKALSLLEKMVSSK------CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQ 369

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +   Y+SLI G         A  L+ EM ++G +PNVV +   ++ LC++ K DEA  
Sbjct: 370 KANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAED 429

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+ M+  G  P+A  Y++LM GF   G   +A  ++  M S     +V    +L+NG C
Sbjct: 430 ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLC 489

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  +  AL++++ ML +G++P VV Y++
Sbjct: 490 ESGRLREALTVWTHMLGEGLKPDVVAYSS 518



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 162/329 (49%), Gaps = 12/329 (3%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           F ++F    K       ++ F R+ N +     + ++N ++N   + G  S  F     +
Sbjct: 127 FILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHV 186

Query: 79  L---RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
                  F P+ +T+  +IK LC   +I  A   F ++    C PDVFTY+TL+NGLC+ 
Sbjct: 187 FGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKE 246

Query: 136 GHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                A+ L +EM A G       C P+ +T++ + D L K G + +A +L   M  +  
Sbjct: 247 RRVDEAVFLLDEMQAEG-------CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGC 299

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY +LI G C     ++A  L  +M+     PN VT+  I+N L K  + ++   
Sbjct: 300 VPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVH 359

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  M + G + +  +Y++L+ G    G+   A  L+  M   GC  +V  YG  I+G C
Sbjct: 360 ILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLC 419

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++++ + A  +  EMLSKG  P   TY++
Sbjct: 420 RDEKPDEAEDILQEMLSKGFLPNAFTYSS 448



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 142/274 (51%), Gaps = 10/274 (3%)

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIM-EAAALFTKL-RAFGCKPDVFTYTTLING 131
           VL R+ R         F  + K  C ++ +  EA   F ++     CK  V ++ +++N 
Sbjct: 111 VLDRMKREGRVLTETIFILIFKA-CGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNV 169

Query: 132 LCRTGHTIVALNLFEEM--ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           + + G    A   +  +  AN  G      +P+ +TY+ I   LCK G +D+A + F +M
Sbjct: 170 IIQEGDFSYAFKFYLHVFGANSKG-----FQPNLLTYNLIIKALCKLGQIDRAVDTFREM 224

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
             +N NPDV TY++L+ G C     +EA  L  EM  +G  PN VTFNV+++ L KNG +
Sbjct: 225 PLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDL 284

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
             A++L++ M   G  P+   YNTL+ G CL G++++A  L   M S+ C+ +  +YG +
Sbjct: 285 SRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTI 344

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ING  K +  E  + +   M  +G +     Y++
Sbjct: 345 INGLVKQRRAEDGVHILMSMEERGQKANEYIYSS 378



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 156/359 (43%), Gaps = 45/359 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L      D  LSL +++ S    P+  TY  +IN   K  R   G  +
Sbjct: 301 PNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHI 360

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +       +   ++SLI GL  E +   A  L+ ++   GCKP+V  Y   I+GLCR
Sbjct: 361 LMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCR 420

Query: 135 TGHTIVALNLFEEM--------------------ANGNGEFGVVCKPDAITY-------- 166
                 A ++ +EM                      G+ +  ++   + ++         
Sbjct: 421 DEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVC 480

Query: 167 -STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
            S + +GLC+ G + +A  ++  M  E + PDVV Y+S+I+G C     ++   LF EM 
Sbjct: 481 CSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ 540

Query: 226 DQ--GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
            Q    +P+VVT+N++ N LC+   +  A  LL  M+  G  PD+   N  ++   L  R
Sbjct: 541 CQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLE--TLRER 598

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +N  ++  + ++             L+    K +    AL +  EML + + P   T++
Sbjct: 599 INPPQDGRLFLDE------------LVVRLLKRERKLSALRIVEEMLLRFLPPEPSTWS 645


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L    +     +    L   +   G  P +YTYN +IN  CK G+      V
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +LRS  +PD+ T+ SL+   C +  ++E   +F+ +R+    PD+  ++++++   R
Sbjct: 328 FAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTR 387

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+   AL  F    N   E G++  PD + Y+ +  G C++G +  A  L  +M  +  
Sbjct: 388 SGNLDKALMYF----NSVKEAGLI--PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGC 441

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             DVVTY +++ G C      EA  LF EM ++ + P+  T  ++++  CK G +  A  
Sbjct: 442 AMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAME 501

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M +  +R D   YNTL+DGF   G ++ AKE++  M S   +    SY IL+N  C
Sbjct: 502 LFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALC 561

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               +  A  ++ EM+SK I+PTV+  N+
Sbjct: 562 SKGHLAEAFRVWDEMISKNIKPTVMICNS 590



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 169/326 (51%), Gaps = 6/326 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V + NI+   L K+   + V +   ++   G++PD+ TYN LI+ +   G +   F ++ 
Sbjct: 235 VYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMN 294

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +    F+P   T+ ++I GLC   +   A  +F ++   G  PD  TY +L+   C+ G
Sbjct: 295 AMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG 354

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
             +    +F +M + +        PD + +S++     + G +DKA   F  +K+  + P
Sbjct: 355 DVVETEKVFSDMRSRD------VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 408

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D V YT LI+G+C     + A  L  EM+ QG   +VVT+N I++ LCK   + EA +L 
Sbjct: 409 DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLF 468

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M +  + PD+     L+DG C  G +  A ELF  M+      DV +Y  L++G+ K 
Sbjct: 469 NEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKV 528

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
            +I+ A  ++++M+SK I PT ++Y+
Sbjct: 529 GDIDTAKEIWADMVSKEILPTPISYS 554



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 171/341 (50%), Gaps = 9/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M      P  VC F+ +     ++ + D  L  F  +   GL PD   Y ILI  +
Sbjct: 362 VFSDMRSRDVVPDLVC-FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY 420

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ G +S    +   +L+     D VT+ +++ GLC    + EA  LF ++      PD 
Sbjct: 421 CRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDS 480

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +T T LI+G C+ G+   A+ LF++M           + D +TY+T+ DG  K G +D A
Sbjct: 481 YTLTILIDGHCKLGNLQNAMELFQKMKEKR------IRLDVVTYNTLLDGFGKVGDIDTA 534

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           KE++  M  + I P  ++Y+ L+   C      EA  ++ EM+ + ++P V+  N ++  
Sbjct: 535 KEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN--GCM 300
            C++G   +    LE MI  G  PD   YNTL+ GF     +++A  L   ME    G +
Sbjct: 595 YCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLV 654

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            DVF+Y  +++G+C+  +++ A  +  +M+ +G+ P   TY
Sbjct: 655 PDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTY 695



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 165/323 (51%), Gaps = 6/323 (1%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N L G L +    +    +++ ++  G+  ++YT NI++N  CK G++      L ++  
Sbjct: 204 NALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQE 263

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD VT+ +LI    ++  + EA  L   +   G  P V+TY T+INGLC+ G    
Sbjct: 264 KGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYER 323

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A  +F EM            PD+ TY ++    CK+G V + +++F  M+  ++ PD+V 
Sbjct: 324 AKEVFAEMLRSG------LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVC 377

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           ++S++  F  + + ++A   F  + + G+ P+ V + +++   C+ G +  A  L   M+
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEML 437

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           Q G   D   YNT++ G C    +  A +LF  M       D ++  ILI+G+CK   ++
Sbjct: 438 QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQ 497

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A+ L+ +M  K IR  VVTYNT
Sbjct: 498 NAMELFQKMKEKRIRLDVVTYNT 520



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 152/321 (47%), Gaps = 6/321 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F++L     + +        F  L S G    +   N LI    ++G V   + V   I 
Sbjct: 168 FDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEIS 227

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           RS    +  T   ++  LC + ++ +     ++++  G  PD+ TY TLI+     G   
Sbjct: 228 RSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLME 287

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L   M  G G       P   TY+T+ +GLCK G  ++AKE+F +M    ++PD  
Sbjct: 288 EAFELMNAMP-GKG-----FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDST 341

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY SL+   C   D  E + +F +M  + V P++V F+ +M+   ++G +D+A      +
Sbjct: 342 TYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 401

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + G+ PD  +Y  L+ G+C  G ++ A  L   M   GC  DV +Y  +++G CK K +
Sbjct: 402 KEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 461

Query: 320 EGALSLYSEMLSKGIRPTVVT 340
             A  L++EM  + + P   T
Sbjct: 462 GEADKLFNEMTERALFPDSYT 482



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 133/284 (46%), Gaps = 8/284 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N +   L K K       LF  +    LFPD YT  ILI+  CK+G +     +  
Sbjct: 445 VVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQ 504

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++       D VT+ +L+ G      I  A  ++  + +    P   +Y+ L+N LC  G
Sbjct: 505 KMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKG 564

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           H   A  +++EM + N       KP  +  +++  G C+ G     +    KM  E   P
Sbjct: 565 HLAEAFRVWDEMISKN------IKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVP 618

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ--GVQPNVVTFNVIMNELCKNGKMDEASR 254
           D ++Y +LI GF    + ++A  L  +M ++  G+ P+V T+N I++  C+  +M EA  
Sbjct: 619 DCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEV 678

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +L  MI+ GV PD S Y  +++GF     +  A  +   M   G
Sbjct: 679 VLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRG 722



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 181/400 (45%), Gaps = 77/400 (19%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKR-LNSIGL-FPDL----YTYN 56
           + ++++R++P    +    +L+ C  +N      L+L +R ++ +G  FP+      + +
Sbjct: 69  VRNHLIRLNP----LAVVEVLYRC--RND-----LTLGQRFVDQLGFHFPNFKHTSLSLS 117

Query: 57  ILINCFCKMGRVSPGFVVLGRILR------------------SCFTPDAVTFTSLIKGLC 98
            +I+   + GR+S     L R++R                  +C + D+V F  LI+   
Sbjct: 118 AMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSV-FDLLIRTYV 176

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
              ++ EA   FT LR+ G    +     LI  L R G   +A  +++E++      G+ 
Sbjct: 177 QARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSG--VGI- 233

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              +  T + + + LCK+G ++K      +++++ + PD+VTY +LI  +       EA 
Sbjct: 234 ---NVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAF 290

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L   M  +G  P V T+N ++N LCK+GK + A  +   M++ G+ PD++ Y +L+   
Sbjct: 291 ELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEA 350

Query: 279 CLTGRVNRAKELFVSMESN-----------------------------------GCMRDV 303
           C  G V   +++F  M S                                    G + D 
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 410

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             Y ILI GYC+   I  A++L +EML +G    VVTYNT
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNT 450


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 167/344 (48%), Gaps = 12/344 (3%)

Query: 4   FDYMLRMHPSP---PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            D +  M   P   P    +N     L K+      + + K +      PD+ T+N LI 
Sbjct: 38  MDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIA 97

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK GR+     VL  + RS F  + VT+ +LI GL +  R  EA  +   ++     P
Sbjct: 98  GLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV---MQGMTTTP 154

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TY  +I+G C++G    A    EEM    G     C PD  TYS + +GLCK   + 
Sbjct: 155 DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAG-----CSPDTFTYSILINGLCKSSNLR 209

Query: 181 KAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           KA EL  +M   ++    VV + +L+ G+C A D + A+ L   M++ G  P+VVT++ I
Sbjct: 210 KADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTI 269

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LC+ G +D+   LLE M+  G +PD   Y  L+ G C  G++  A  L   M  +GC
Sbjct: 270 IDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGC 329

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  +Y ++ +G CK  +++ A  L + +  KG    VV +  
Sbjct: 330 TPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEA 373



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 154/297 (51%), Gaps = 9/297 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L   L K    D    +   +   G   +L TYN LIN     GR     +V
Sbjct: 87  PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA-FGCKPDVFTYTTLINGLC 133
           +  +     TPD  T+ ++I G C    I  A     +++   GC PD FTY+ LINGLC
Sbjct: 147 MQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           ++ +   A  L +EM          C    + ++T+ DG CK   +D+A+EL   M +  
Sbjct: 204 KSSNLRKADELLQEMIGRKD-----CCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG 258

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PDVVTY+++I G C   D ++   L  +M+ +G +P+VVT+ V++  LCK GKM EA 
Sbjct: 259 CAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEAC 318

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           RL++ M++ G  P+A  Y+ + DG C   +++ A +L  S+   G + DV ++  L+
Sbjct: 319 RLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 134/261 (51%), Gaps = 12/261 (4%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
           D  T+  L++  C    +  A  L  ++ +  G  P    Y   ++ LC++G    A+ +
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
            + M +G       CKPD +T++T+  GLCK G +D+A+++  +M+      ++VTY +L
Sbjct: 77  VKNMKDG------ACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTL 130

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ-IG 263
           I G   A    EA    + M      P+  T+N I++  CK+G++D A   LE M Q  G
Sbjct: 131 INGLSSAGRSGEA---VLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAG 187

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGA 322
             PD   Y+ L++G C +  + +A EL   M     C   V ++  L++GYCK ++++ A
Sbjct: 188 CSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRA 247

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
             L S ML  G  P VVTY+T
Sbjct: 248 RELLSSMLEHGCAPDVVTYST 268



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V +++ +   L +    D   +L +++ S G  PD+ TY +L+   CK G++  
Sbjct: 257 HGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE 316

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
              ++ R+L    TP+AVT++ +  GLC   ++  A  L T +R  G   DV  +  L+
Sbjct: 317 ACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 171/362 (47%), Gaps = 41/362 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L     K + +DT   +   +   G   +  TYN+LI   C+ G V   F  
Sbjct: 115 PDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGF 174

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD  T+ +LI GLC   R  EA AL  ++     KP+V  Y  LI+G  R
Sbjct: 175 KKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMR 234

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  + +EM           +P+ ITY  +  GLCK G +D+A  L  +M  ++ 
Sbjct: 235 EGNADEAFKMIKEMVAAG------VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSH 288

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +TY  +I G    ++  +A  L  EM + G+ PNV T++++++ LC++G+ ++AS 
Sbjct: 289 RPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASD 348

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCL---------------------------------- 280
           LLE M   G++P+A VY  L+ G+C                                   
Sbjct: 349 LLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLS 408

Query: 281 -TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             GRV  + + F  M+  G + + F+Y  LI+GY KN ++E A  L   ML  G++P  V
Sbjct: 409 KVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDV 468

Query: 340 TY 341
            Y
Sbjct: 469 IY 470



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  L     +  + D    + K + + G+ P+  TY+ L+   CKMG++    ++
Sbjct: 220 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLL 279

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++R    PD +T+  +I+G        +A  L +++   G  P+V+TY+ +I+GLC+
Sbjct: 280 LKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQ 339

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A +L EEM           KP+A  Y+ +  G C+EG V  A E+F KM   N+
Sbjct: 340 SGEPEKASDLLEEMTTKG------LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNV 393

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+  Y SLI G        E+   F +M ++G+ PN  T++ +++   KNG ++ A +
Sbjct: 394 LPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQ 453

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ M+  G++P+  +Y  L++ +  +  + +    F SM   G M D   YGILI+   
Sbjct: 454 LVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLS 513

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  +E A  + SE+   G  P V  Y++
Sbjct: 514 SSGNMEAAFRVLSEIEKNGSVPDVHVYSS 542



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 173/351 (49%), Gaps = 22/351 (6%)

Query: 7   MLRMHPSPPPVCS----------------FNILFGCLAKNKHYDTVLSLFKRLNSIGLFP 50
           M+R +PSPP V +                 ++L     K+        +   +   GL P
Sbjct: 21  MIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAP 80

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
            +   N L+    +   ++  + V   ++ +  +PD  T+++LI+  C       A  + 
Sbjct: 81  SIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVL 140

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++R  GC  +  TY  LI GLCR+G    A    ++M     ++G+V  PD  TY  + 
Sbjct: 141 VEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME----DYGLV--PDGFTYGALI 194

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +GLCK    ++AK L  +M    + P+VV Y +LI GF    + +EA  +  EM+  GVQ
Sbjct: 195 NGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQ 254

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN +T++ ++  LCK G+MD AS LL+ M++   RPD   YN +++G         A  L
Sbjct: 255 PNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRL 314

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              ME+ G   +V++Y I+I+G C++ E E A  L  EM +KG++P    Y
Sbjct: 315 LSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVY 365



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 162/337 (48%), Gaps = 6/337 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+R     P +   N L   L +      +  + + +   G+ PD+YTY+ LI  +CK+ 
Sbjct: 72  MMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVR 131

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
                  VL  +       + VT+  LI GLC    + EA      +  +G  PD FTY 
Sbjct: 132 EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYG 191

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC++  +  A  L +EM+          KP+ + Y+ + DG  +EG  D+A ++ 
Sbjct: 192 ALINGLCKSRRSNEAKALLDEMSCAE------LKPNVVVYANLIDGFMREGNADEAFKMI 245

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M    + P+ +TY +L+RG C     + A  L  +M+    +P+ +T+N+I+    ++
Sbjct: 246 KEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRH 305

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
               +A RLL  M   G+ P+   Y+ ++ G C +G   +A +L   M + G   + F Y
Sbjct: 306 HNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVY 365

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI+GYC+   +  A  ++ +M    + P +  YN+
Sbjct: 366 APLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNS 402



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 165/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N++     ++ +      L   + + G+ P++YTY+I+I+  C+ G       +
Sbjct: 290 PDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 349

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+A  +  LI G C E  +  A  +F K+      PD++ Y +LI GL +
Sbjct: 350 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 409

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    +   F +M     E G++  P+  TYS +  G  K G ++ A++L  +M D  +
Sbjct: 410 VGRVEESTKYFAQMQ----ERGLL--PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGL 463

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V Y  L+  +  ++D  +    F  M+DQGV  +   + ++++ L  +G M+ A R
Sbjct: 464 KPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFR 523

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  + + G  PD  VY++L+ G C T    +A  +   M   G   ++  Y  LI+G C
Sbjct: 524 VLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLC 583

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+ +I  A ++++ +L+KG+ P  VTY +
Sbjct: 584 KSGDISYARNVFNSILAKGLVPNCVTYTS 612



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 42/363 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++I+   L ++   +    L + + + GL P+ + Y  LI+ +C+ G VS    +
Sbjct: 325 PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEI 384

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++ +    PD   + SLI GL    R+ E+   F +++  G  P+ FTY+ LI+G  +
Sbjct: 385 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 444

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L + M +         KP+ + Y  + +   K   ++K    F  M D+ +
Sbjct: 445 NGDLESAEQLVQRMLDTG------LKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGV 498

Query: 195 N-----------------------------------PDVVTYTSLIRGFCYANDWNEAKC 219
                                               PDV  Y+SLI G C   D  +A  
Sbjct: 499 MLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFG 558

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +  EM  +GV PN+V +N +++ LCK+G +  A  +   ++  G+ P+   Y +L+DG C
Sbjct: 559 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSC 618

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++ A  L+  M + G   D F Y +L  G     ++E A+ L  EM  +G   ++ 
Sbjct: 619 KVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASIS 677

Query: 340 TYN 342
           ++N
Sbjct: 678 SFN 680



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 174/365 (47%), Gaps = 43/365 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M +++  P   C  +++FG L+K    +     F ++   GL P+ +TY+ LI+ +
Sbjct: 384 IFDKMTKVNVLPDLYCYNSLIFG-LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 442

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI---------------------KGLCAES 101
            K G +     ++ R+L +   P+ V +  L+                     +G+  ++
Sbjct: 443 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 502

Query: 102 RI-------------MEAA-ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           RI             MEAA  + +++   G  PDV  Y++LI+GLC+T     A  + +E
Sbjct: 503 RIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 562

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M+    +  +VC      Y+ + DGLCK G +  A+ +F  +  + + P+ VTYTSLI G
Sbjct: 563 MSKKGVDPNIVC------YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDG 616

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C   D + A  L+ EM+  G+ P+   ++V+       G +++A  L+E M   G    
Sbjct: 617 SCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HAS 675

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
            S +N L+DGFC  G++    +L   +   G + +  +   +I+G  +  ++    +++ 
Sbjct: 676 ISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFV 735

Query: 328 EMLSK 332
           E+  K
Sbjct: 736 ELQQK 740



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 138/327 (42%), Gaps = 45/327 (13%)

Query: 55  YNILINCFCKMGRVSPGF-VVLGRILRSCFTP---DAVTFTSLIKGLCAESRIMEAAALF 110
           +N+      KM R  P   VVL  I R+              L+       R+ +AA + 
Sbjct: 11  FNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVV 70

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
             +R  G  P +     L+  L R     +   + E M       G    PD  TYST+ 
Sbjct: 71  LMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMV------GAGISPDVYTYSTLI 124

Query: 171 D-----------------------------------GLCKEGFVDKAKELFLKMKDENIN 195
           +                                   GLC+ G V++A      M+D  + 
Sbjct: 125 EAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLV 184

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PD  TY +LI G C +   NEAK L  EM    ++PNVV +  +++   + G  DEA ++
Sbjct: 185 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 244

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           ++ M+  GV+P+   Y+ L+ G C  G+++RA  L   M  +    D  +Y ++I G+ +
Sbjct: 245 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFR 304

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +   + A  L SEM + GI P V TY+
Sbjct: 305 HHNKKDAFRLLSEMENAGISPNVYTYS 331



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 135/309 (43%), Gaps = 29/309 (9%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V  ++ L   L K    +    +   ++  G+ P++  YN LI+  CK G +S   
Sbjct: 533 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 592

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V   IL     P+ VT+TSLI G C    I  A  L+ ++ A G  PD F Y+ L  G 
Sbjct: 593 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 652

Query: 133 CRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
              G    A+ L EEM   G+            +++ + DG CK G + +  +L   +  
Sbjct: 653 SSAGDLEQAMFLIEEMFLRGHASIS--------SFNNLVDGFCKRGKMQETLKLLHVIMG 704

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIE-------------------MMDQGVQPN 232
             + P+ +T  ++I G   A   +E   +F+E                   M++QG  P 
Sbjct: 705 RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPL 764

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
            V  ++I +  CK G +D+A  L ++++        S Y  ++D  C  G+++ A  L  
Sbjct: 765 DVVDDMIRDH-CKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLK 823

Query: 293 SMESNGCMR 301
            M+  G ++
Sbjct: 824 EMDKRGNLQ 832


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 179/328 (54%), Gaps = 9/328 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVVLGR 77
           ++N L   L  +      ++LF+     GL+ PD++++N++I   C++G +     ++ R
Sbjct: 48  AYNNLLNTLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVER 107

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTG 136
           +     +PD +T   L+ GLC   ++ +   +  +L+  G C P+V TYT++I+G C+ G
Sbjct: 108 MTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAG 167

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A +++ +M           +P+ +TY+ + +G  K   ++ A  ++ ++   +  P
Sbjct: 168 RMKDAFSVYNDMLQSG------TRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPP 221

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           DVVT+ SLI G+C     ++A  +++EM    +QPNV TF++I++ LC   +  EA  LL
Sbjct: 222 DVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLL 281

Query: 257 -ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            EL ++  + P   +YN ++D  C  G+V+ A  +   ME  GC  D ++Y ILI G+C 
Sbjct: 282 RELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCM 341

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              I  A++L+ +M+  G RP  +T N+
Sbjct: 342 KGRIPEAVTLFHKMVETGCRPDNITINS 369



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 153/290 (52%), Gaps = 8/290 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN++   + +  +    L L +R+   G  PD  T NIL++  C++ +V+ G  V
Sbjct: 80  PDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHEV 139

Query: 75  LGRILRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L R+ R     P+ VT+TS+I G C   R+ +A +++  +   G +P+  TY  LING  
Sbjct: 140 LRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYG 199

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A+ ++ ++   +      C PD +T++++ DG C+ G +D A  ++++M   +
Sbjct: 200 KALDMESAVRMYWQLILHS------CPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHH 253

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           I P+V T++ +I   C  N   EA  L  E+ M   + P    +N I++ LCK GK+DEA
Sbjct: 254 IQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEA 313

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           + ++  M + G  PD   Y  L+ G C+ GR+  A  LF  M   GC  D
Sbjct: 314 NLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCRPD 363



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 46/302 (15%)

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAA-LFTKLRAFGCK------------------- 119
           +S + PDA  F S + G C  + +++AAA L TK   FGC+                   
Sbjct: 4   QSGYVPDA-GFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRA 62

Query: 120 -----------------PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
                            PDV+++  +I G+CR G+   AL L E M     EFG  C PD
Sbjct: 63  QDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMT----EFG--CSPD 116

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENI-NPDVVTYTSLIRGFCYANDWNEAKCLF 221
            IT + + DGLC+   V+K  E+  +++ + +  P+VVTYTS+I G+C A    +A  ++
Sbjct: 117 TITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVY 176

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +M+  G +PN VT+NV++N   K   M+ A R+   +I     PD   +N+L+DG+C  
Sbjct: 177 NDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRC 236

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM-LSKGIRPTVVT 340
           G+++ A  +++ M  +    +V+++ I+I+  C       ALSL  E+ +   I P    
Sbjct: 237 GQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFI 296

Query: 341 YN 342
           YN
Sbjct: 297 YN 298



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 127/273 (46%), Gaps = 31/273 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL-FPDLYTYNILINCFCKMGRVSPGFV 73
           P   + NIL   L + K  +    + +RL   G+  P++ TY  +I+ +CK GR+   F 
Sbjct: 115 PDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFS 174

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   +L+S   P+ VT+  LI G      +  A  ++ +L    C PDV T+ +LI+G C
Sbjct: 175 VYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYC 234

Query: 134 RTGHTIVALNLFEEMANGNGE-----FGVVCK-------------------------PDA 163
           R G    A+ ++ EM   + +     F ++                           P  
Sbjct: 235 RCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQT 294

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
             Y+ I D LCK G VD+A  +   M+++  +PD  TYT LI G C      EA  LF +
Sbjct: 295 FIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHK 354

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           M++ G +P+ +T N  ++ + K G  +E  +++
Sbjct: 355 MVETGCRPDNITINSFISCVLKAGMPNEVHQIM 387



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 7/183 (3%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           + L +H  PP V +FN L     +    D  + ++  +    + P++YT++I+I+  C  
Sbjct: 212 WQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQ 271

Query: 66  GRVSPGFVVLGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
            R +    +L  + +R+   P    +  +I  LC   ++ EA  + T +   GC PD +T
Sbjct: 272 NRSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYT 331

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           YT LI G C  G    A+ LF +M     E G  C+PD IT ++    + K G  ++  +
Sbjct: 332 YTILIIGHCMKGRIPEAVTLFHKMV----ETG--CRPDNITINSFISCVLKAGMPNEVHQ 385

Query: 185 LFL 187
           + L
Sbjct: 386 IML 388


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 168/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYVPSVVT 418



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++ +M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYXQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G +  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 100/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTT 316



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 89/182 (48%)

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           D   +S +     + GF+  A E +   K+        T   +I        +      +
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFY 124

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            E ++ G   ++  FN++M+   K G++  A  + + + + G+RP    +NTLM+G+   
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G ++    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  VT+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 342 NT 343
            T
Sbjct: 245 TT 246


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 180/369 (48%), Gaps = 32/369 (8%)

Query: 7   MLRMHP-SPPPVCS-----FNILFGCLAKNKHYDTVLSLFKRLNSIGL-FPDLYTYNILI 59
           +LR+H  SPPP+       F  L   L++       L LF  ++      P   TYN +I
Sbjct: 101 VLRLHSLSPPPLRPLFDRPFASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVI 160

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
              C+   ++     L  ++RS + PDA TF SLI G C  +++  A  LF K+   G  
Sbjct: 161 RSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFA 220

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGN----------------GEFGVV----- 158
            DV +Y TLI GLC  G    A+ LF EM   +                GE G++     
Sbjct: 221 QDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRM 280

Query: 159 ----CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
                +P    Y+ + D  C+E    +A+E+  +M ++ + P VVT T++I  +C     
Sbjct: 281 KELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRM 340

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           ++A  +   M  +G +PNV T+N ++   C  GK+ +A  LL  M   GV PDA  YN L
Sbjct: 341 SDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLL 400

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + G C+ G +  A  L   ME +G + D ++Y  LIN  CK+   + A SL+  + ++GI
Sbjct: 401 IRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGI 460

Query: 335 RPTVVTYNT 343
           +P  VT+N+
Sbjct: 461 KPNAVTFNS 469



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 157/325 (48%), Gaps = 10/325 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S+  L   L +    D  + LF  ++     PD++ Y  L+   C   R   G ++L 
Sbjct: 223 VVSYATLIEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLR 278

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R+    + P    + +++   C E +  EA  +  ++   G  P V T T +IN  C+ G
Sbjct: 279 RMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEG 338

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL + E M          CKP+  TY+ +  G C EG V KA  L  KM+   +NP
Sbjct: 339 RMSDALRVLELMKLRG------CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNP 392

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTY  LIRG C       A  L   M   G+  +  T+N ++N LCK+G+ D+A  L 
Sbjct: 393 DAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF 452

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + +   G++P+A  +N+L++G C +G+ + A +    M S GC  D ++Y   I   CK 
Sbjct: 453 DSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKM 512

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
           K  +  LS   EML K ++P+ V Y
Sbjct: 513 KGSQEGLSFIGEMLQKDVKPSTVNY 537



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 157/328 (47%), Gaps = 8/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +   +     K       L + + +   G  P+++TYN L+  FC  G+V     +
Sbjct: 322 PCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTL 381

Query: 75  LGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L + +R+C   PDAVT+  LI+G C +  I  A  L   +   G   D +TY  LIN LC
Sbjct: 382 LNK-MRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALC 440

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T  A +LF+ +           KP+A+T++++ +GLCK G  D A +   KM    
Sbjct: 441 KDGRTDQACSLFDSLETRG------IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG 494

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD  TY+S I   C      E      EM+ + V+P+ V + +++++L K       +
Sbjct: 495 CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVA 554

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R    M+  G  PD   Y T M  +C+ GR+N A+ + + M  NG   D  +Y  L++G+
Sbjct: 555 RTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGH 614

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
               + + A+S+  +M S    P   TY
Sbjct: 615 ASIGQTDHAVSILKQMTSVASVPNQFTY 642



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 168/370 (45%), Gaps = 33/370 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F +M R  P  P   ++N +   L +       L     +   G  PD YT+N LI  +
Sbjct: 139 LFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGY 198

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  +V     +  ++    F  D V++ +LI+GLC   RI EA  LF ++     +PD+
Sbjct: 199 CRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMD----QPDM 254

Query: 123 FTYTTLINGLC------------------------RTGHTIVALNLFEEMANGNGE---- 154
             Y  L+ GLC                        R    +V     E  A    E    
Sbjct: 255 HMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQE 314

Query: 155 -FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
            F     P  +T + + +  CKEG +  A  +   MK     P+V TY +L++GFC    
Sbjct: 315 MFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGK 374

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            ++A  L  +M   GV P+ VT+N+++   C +G ++ A RLL LM   G+  D   YN 
Sbjct: 375 VHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNA 434

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L++  C  GR ++A  LF S+E+ G   +  ++  LING CK+ + + A     +M+S G
Sbjct: 435 LINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG 494

Query: 334 IRPTVVTYNT 343
             P   TY++
Sbjct: 495 CTPDTYTYSS 504



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 155/333 (46%), Gaps = 6/333 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++++    P V ++N L             ++L  ++ + G+ PD  TYN+LI   C  G
Sbjct: 349 LMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDG 408

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +   F +L  +       D  T+ +LI  LC + R  +A +LF  L   G KP+  T+ 
Sbjct: 409 HIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFN 468

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           +LINGLC++G   +A    E+M +        C PD  TYS+  + LCK     +     
Sbjct: 469 SLINGLCKSGKADIAWKFLEKMVSAG------CTPDTYTYSSFIEHLCKMKGSQEGLSFI 522

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ P  V YT +I       ++      + EM+  G  P+VVT+   M   C  
Sbjct: 523 GEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIE 582

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G+++EA  +L  M + GV  D   YNTLMDG    G+ + A  +   M S   + + F+Y
Sbjct: 583 GRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTY 642

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            IL+    + + +E  L L    + K I  T V
Sbjct: 643 FILLRHLVRMRLVEDVLPLTPAGVWKAIELTDV 675



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 139/298 (46%), Gaps = 8/298 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRI-LRSCFTPDAVTFTSLIKGLCAESRIME 105
           GL P + T   +IN +CK GR+S    VL  + LR C  P+  T+ +L++G C E ++ +
Sbjct: 319 GLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC-KPNVWTYNALVQGFCNEGKVHK 377

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           A  L  K+RA G  PD  TY  LI G C  GH   A  L   M  G+G        D  T
Sbjct: 378 AMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLM-EGDGLIA-----DQYT 431

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ + + LCK+G  D+A  LF  ++   I P+ VT+ SLI G C +   + A     +M+
Sbjct: 432 YNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMV 491

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G  P+  T++  +  LCK     E    +  M+Q  V+P    Y  ++          
Sbjct: 492 SAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYG 551

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                +  M S+GC  DV +Y   +  YC    +  A ++  EM   G+    + YNT
Sbjct: 552 LVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNT 609



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 147/373 (39%), Gaps = 46/373 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L K+   D      +++ S G  PD YTY+  I   CKM     G   
Sbjct: 462 PNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSF 521

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +G +L+    P  V +T +I  L  E      A  + ++ + GC PDV TYTT +   C 
Sbjct: 522 IGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCI 581

Query: 135 TGHTIVALNLFEEMA---------------NGNGEFG--------------VVCKPDAIT 165
            G    A N+  EM+               +G+   G              V   P+  T
Sbjct: 582 EGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFT 641

Query: 166 YSTITDGLCKEGFVD-----------KAKEL------FLKMKDENINPDVVTYTSLIRGF 208
           Y  +   L +   V+           KA EL      F  MK     P+  TY+S++ GF
Sbjct: 642 YFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGF 701

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
                  EA  L   M +  +  N   +  ++   CK+ +  +A  L+  MIQ G  P  
Sbjct: 702 SEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQL 761

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y  L+ G    G+ ++AKE+F++        D   + ++I+G  K    + +  +   
Sbjct: 762 MSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIM 821

Query: 329 MLSKGIRPTVVTY 341
           +     RP+  TY
Sbjct: 822 LERMNCRPSHQTY 834



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 144/306 (47%), Gaps = 11/306 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ I+   L K ++Y  V   +  + S G  PD+ TY   +  +C  GR++    V
Sbjct: 532 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 591

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + ++  T D + + +L+ G  +  +   A ++  ++ +    P+ FTY  L+  L R
Sbjct: 592 LMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVR 651

Query: 135 TGHTIVALNLFE-------EMANGNGEFGVVCK----PDAITYSTITDGLCKEGFVDKAK 183
                  L L         E+ +  G F V+ K    P++ TYS+I +G  ++G  ++A 
Sbjct: 652 MRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEAT 711

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L   MK+++I+ +   YT+L+  FC +  + +A  L   M+  G  P ++++  +++ L
Sbjct: 712 SLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGL 771

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
              G+ D+A  +          PD  V+  ++DG    G  + ++E+ + +E   C    
Sbjct: 772 ICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSH 831

Query: 304 FSYGIL 309
            +Y +L
Sbjct: 832 QTYAML 837



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 111/242 (45%), Gaps = 23/242 (9%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV------SPG- 71
           ++N L    A     D  +S+ K++ S+   P+ +TY IL+    +M  V      +P  
Sbjct: 606 AYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAG 665

Query: 72  ----------FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
                     F +   + ++ F P++ T++S+++G   + R  EA +L + ++      +
Sbjct: 666 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 725

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
              YT L+   C++   + A  L   M     + G +  P  ++Y  +  GL  EG  DK
Sbjct: 726 EDIYTALVTCFCKSKRYLDAWVLVCSMI----QHGFI--PQLMSYQHLLSGLICEGQTDK 779

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AKE+F+  + ++ +PD + +  +I G       + ++ + I +     +P+  T+ ++  
Sbjct: 780 AKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTE 839

Query: 242 EL 243
           EL
Sbjct: 840 EL 841


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 167/333 (50%), Gaps = 12/333 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLN-SIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V + NIL     + +  D  L LF  +  +  L P+  TY  +I C+CKM R+     
Sbjct: 68  PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQ 127

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGL 132
           +L     SC + D +  TS+ +G C   R+ EA  L   +      KPD+  +  +I+G 
Sbjct: 128 LLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGF 185

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF--LKMK 190
           C+ G    A  + E + +        C P+A+TY+T+ DG CK G + +A +LF  L  +
Sbjct: 186 CKAGRVREAYEMLETLVSMG------CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSR 239

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           D +  P+VVT+ +LI G C A+    A  L  +M  + ++ +  T+  +M+ LCK G+  
Sbjct: 240 DHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTS 299

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           E SR+ E M++ G  P    Y TL+   C  G +  A+++  SM + G   DV +Y +L+
Sbjct: 300 EVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLL 359

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G  +N ++  A   + ++L +   P  V Y+ 
Sbjct: 360 EGLFENGKVRTATEFFEKILRERCPPCAVVYSA 392



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 158/297 (53%), Gaps = 13/297 (4%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P+ +T+++LI   CK GR+        ++L     P+      L+  LC   ++ +A A+
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F   R   C P V T   LING C       AL LF EM      F +V  P+A TY+ I
Sbjct: 61  F---RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKN---FALV--PEATTYTAI 112

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD-QG 228
               CK   +D+A++L    +    + DV+  TS+ RGFC A   +EA  L ++M++ + 
Sbjct: 113 IKCYCKMDRLDQARQLL--EESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKS 170

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
            +P++V +NVI++  CK G++ EA  +LE ++ +G  P+A  Y TL+DGFC +G ++ A 
Sbjct: 171 AKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEAL 230

Query: 289 ELF--VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +LF  +S   +    +V ++  LI+G CK   +E A  L  +M ++ +R    TY T
Sbjct: 231 QLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTT 287



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 142/269 (52%), Gaps = 8/269 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD+  +N++I+ FCK GRV   + +L  ++     P+AVT+T+LI G C    + EA  L
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 110 FTKL--RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
           F  L  R    +P+V T+  LI+GLC+      A  L ++M   +       + D  TY+
Sbjct: 233 FKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARD------LRADTFTYT 286

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           T+ DGLCK+G   +   +F +M  E  NP VVTYT+L+   C A    +A+ +   M+ +
Sbjct: 287 TLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAK 346

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G+ P+V T+ V++  L +NGK+  A+   E +++    P A VY+ L+ G C    V+ A
Sbjct: 347 GIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEA 406

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKN 316
            + +V M       D  +  +L+   CK 
Sbjct: 407 VKYYVEMLDRRLAPDPATCKLLVEMLCKR 435



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+    + P + ++N++     K         + + L S+G  P+  TY  LI+ FCK G
Sbjct: 165 MVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSG 224

Query: 67  RVSPGFVVLGRILRS---CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +S     L ++L S      P+ VTF +LI GLC   R+  A  L  +++A   + D F
Sbjct: 225 NLSEALQ-LFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTF 283

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TYTTL++GLC+ G T     +FEEM          C P  +TY+T+    CK G +  A+
Sbjct: 284 TYTTLMDGLCKQGRTSEVSRVFEEMLREG------CNPSVVTYTTLVHAHCKAGSLQDAQ 337

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           ++   M  + I PDV TYT L+ G         A   F +++ +   P  V ++ ++   
Sbjct: 338 QVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGC 397

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           CK   +DEA +    M+   + PD +    L++  C  GR +
Sbjct: 398 CKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 167/333 (50%), Gaps = 12/333 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLN-SIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V + NIL     + +  D  L LF  +  +  L P+  TY  +I C+CKM R+     
Sbjct: 68  PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQ 127

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGL 132
           +L     SC + D +  TS+ +G C   R+ EA  L   +      KPD+  +  +I+G 
Sbjct: 128 LLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGF 185

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF--LKMK 190
           C+ G    A  + E + +        C P+A+TY+T+ DG CK G + +A +LF  L  +
Sbjct: 186 CKAGRVREAYEMLETLVSMG------CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSR 239

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           D +  P+VVT+ +LI G C A+    A  L  +M  + ++ +  T+  +M+ LCK G+  
Sbjct: 240 DHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTS 299

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           E SR+ E M++ G  P    Y TL+   C  G +  A+++  SM + G   DV +Y +L+
Sbjct: 300 EVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLL 359

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G  +N ++  A   + ++L +   P  V Y+ 
Sbjct: 360 EGLFENGKVRTATEFFEKILRERCPPCAVVYSA 392



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 157/297 (52%), Gaps = 13/297 (4%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P+ +T+++LI   CK GR+        ++L     P+      L+  LC    + +A A+
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F   R   C P V T   LING C       AL LF EM      F +V  P+A TY+ I
Sbjct: 61  F---RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKN---FALV--PEATTYTAI 112

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD-QG 228
               CK   +D+A++L    +    + DV+  TS+ RGFC A   +EA  L ++M++ + 
Sbjct: 113 IKCYCKMDRLDQARQLL--EESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKS 170

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
            +P++V +NVI++  CK G++ EA  +LE ++ +G  P+A  Y TL+DGFC +G ++ A 
Sbjct: 171 AKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEAL 230

Query: 289 ELF--VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +LF  +S   +    +V ++  LI+G CK   +E A  L  +M ++ +R    TY T
Sbjct: 231 QLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTT 287



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 142/269 (52%), Gaps = 8/269 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD+  +N++I+ FCK GRV   + +L  ++     P+AVT+T+LI G C    + EA  L
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 110 FTKL--RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
           F  L  R    +P+V T+  LI+GLC+      A  L ++M   +       + D  TY+
Sbjct: 233 FKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARD------LRADTFTYT 286

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           T+ DGLCK+G   +   +F +M  E  NP VVTYT+L+   C A    +A+ +   M+ +
Sbjct: 287 TLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAK 346

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           G+ P+V T+ V++  L +NGK+  A+   E +++    P A VY+ L+ G C    V+ A
Sbjct: 347 GIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEA 406

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKN 316
            + +V M       D  +  +L+   CK 
Sbjct: 407 VKYYVEMLDRRLAPDPATCKLLVEMLCKR 435



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+    + P + ++N++     K         + + L S+G  P+  TY  LI+ FCK G
Sbjct: 165 MVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSG 224

Query: 67  RVSPGFVVLGRILRS---CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +S     L ++L S      P+ VTF +LI GLC   R+  A  L  +++A   + D F
Sbjct: 225 NLSEALQ-LFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTF 283

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TYTTL++GLC+ G T     +FEEM          C P  +TY+T+    CK G +  A+
Sbjct: 284 TYTTLMDGLCKQGRTSEVSRVFEEMLREG------CNPSVVTYTTLVHAHCKAGSLQDAQ 337

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           ++   M  + I PDV TYT L+ G         A   F +++ +   P  V ++ ++   
Sbjct: 338 QVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGC 397

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           CK   +DEA +    M+   + PD +    L++  C  GR +
Sbjct: 398 CKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 178/331 (53%), Gaps = 10/331 (3%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVV 74
           P    N+L   +A+ +  D V +LF+     GL+ PD +++N++I   C++G       +
Sbjct: 182 PYAYNNLLNLLIARGRAQDAV-ALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALEL 240

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLC 133
           + R+     +PD +T   L+ GLC   ++     L  +L+  G C P+V TYT++I+G C
Sbjct: 241 VERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYC 300

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    AL+++ +M           +P+ +TY+ + +G  K   ++ A  ++ ++    
Sbjct: 301 KAGRMEDALSVYNDMLESG------TRPNTVTYNVLINGYGKALDMESAVRMYRQLILRR 354

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PDVVT++SLI G+C     ++A  ++ EM    +QPNV TF++I++ LCK  +  EA 
Sbjct: 355 CPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEAL 414

Query: 254 RLL-ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L EL ++  + P   +YN ++D  C  G+V  A  +   ME  GC  D ++Y ILI G
Sbjct: 415 GFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIG 474

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +C    I  A++L+ +M+  G RP  +T N+
Sbjct: 475 HCMKGRIPEAITLFHKMVETGCRPDKITVNS 505



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 153/299 (51%), Gaps = 8/299 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   SFN++   + +  ++   L L +R+   G  PD  T+NIL++  C+  +V+ G  +
Sbjct: 216 PDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDL 275

Query: 75  LGRILRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L R+ R     P+ VT+TS+I G C   R+ +A +++  +   G +P+  TY  LING  
Sbjct: 276 LRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYG 335

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A+ ++ ++          C PD +T+S++ DG C+ G +D A  ++ +M   +
Sbjct: 336 KALDMESAVRMYRQLILRR------CPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHH 389

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           I P+V T++ +I   C  N   EA     E+ M   + P    +N +++ LCK G+++EA
Sbjct: 390 IQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEA 449

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           + ++  M + G  PD   Y  L+ G C+ GR+  A  LF  M   GC  D  +    I+
Sbjct: 450 NLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFIS 508



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 168/333 (50%), Gaps = 10/333 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           PP   S++ +   L ++  +   L LF ++ +  G  PD   ++ +       G +    
Sbjct: 108 PPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAV 167

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPDVFTYTTLING 131
            +L +  +     +   + +L+  L A  R  +A ALF      G   PD +++  +I G
Sbjct: 168 TLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKG 227

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           +CR G+   AL L E M     EFG  C PD IT++ + DGLC+   V++  +L  +++ 
Sbjct: 228 VCRVGNFQKALELVERMT----EFG--CSPDTITHNILVDGLCRAKQVNRGHDLLRRLQR 281

Query: 192 ENI-NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           + +  P+VVTYTS+I G+C A    +A  ++ +M++ G +PN VT+NV++N   K   M+
Sbjct: 282 DGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDME 341

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            A R+   +I     PD   +++L+DG+C  G+++ A  ++  M  +    +V+++ I+I
Sbjct: 342 SAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIII 401

Query: 311 NGYCKNKEIEGALSLYSEM-LSKGIRPTVVTYN 342
           +  CK      AL    E+ +   I P    YN
Sbjct: 402 HSLCKQNRSAEALGFLRELNMRADIAPQTFIYN 434



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 128/273 (46%), Gaps = 31/273 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL-FPDLYTYNILINCFCKMGRVSPGFV 73
           P   + NIL   L + K  +    L +RL   G+  P++ TY  +I+ +CK GR+     
Sbjct: 251 PDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALS 310

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           V   +L S   P+ VT+  LI G      +  A  ++ +L    C PDV T+++LI+G C
Sbjct: 311 VYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYC 370

Query: 134 RTGHTIVALNLFEEMANGNGEFGV---------VCK---------------------PDA 163
           R G    A+ +++EM   + +  V         +CK                     P  
Sbjct: 371 RCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQT 430

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
             Y+ + D LCK G V++A  +   M+++  +PD  TYT LI G C      EA  LF +
Sbjct: 431 FIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHK 490

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           M++ G +P+ +T N  ++ + K G  +E  +++
Sbjct: 491 MVETGCRPDKITVNSFISCVLKAGMPNEVDQIM 523


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 163/308 (52%), Gaps = 10/308 (3%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           DTV  + K     G  PD+ TYNILI   C  G V     +L + ++    P+ V++T L
Sbjct: 298 DTVGWMIKS----GCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPL 353

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I   C +   + A  L  K+   G KPD+ TY  LI+GL   G   VAL +  +M     
Sbjct: 354 IHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMV---- 409

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           E GV+  PDA  Y+ +  GLCK+G +  AK L  +M D+N+ PD     +L+ GF    D
Sbjct: 410 EKGVL--PDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGD 467

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + EAK LF   +++G+ P VV +N ++   CK G M +A    + MIQ    PD   Y+T
Sbjct: 468 FEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYST 527

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++DG+     ++ A  +F  M    C  +V +Y +LING+C + +I  A   + +MLS  
Sbjct: 528 IIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLR 587

Query: 334 IRPTVVTY 341
           ++P VVTY
Sbjct: 588 LKPNVVTY 595



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 170/366 (46%), Gaps = 31/366 (8%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +++H   P V S N L   L K+   +    ++  +       D YT  I++   CK G+
Sbjct: 128 IKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGK 187

Query: 68  VSPGF-VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           V  G+ ++  R  R C  P+ V + +LI G C +     A  LF +L+  G  P V TY 
Sbjct: 188 VEDGWKLIEKRWGRGCM-PNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYG 246

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVV---------------------------- 158
            +ING C+ G   V   L  EM+    +  +                             
Sbjct: 247 AIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKS 306

Query: 159 -CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
            C PD  TY+ +  G C  G V KA++L  +     + P+ V+YT LI  +C   ++  A
Sbjct: 307 GCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRA 366

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             L I+M ++G +P++VT+  +++ L   G++D A  +   M++ GV PDA++YN LM G
Sbjct: 367 LDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSG 426

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C  GR+  AK L   M       D F    L++G+ ++ + E A  L+   + KGI P 
Sbjct: 427 LCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPG 486

Query: 338 VVTYNT 343
           VV YN 
Sbjct: 487 VVGYNA 492



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 163/351 (46%), Gaps = 20/351 (5%)

Query: 4   FDYMLRMHP--SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            D +++M      P + ++  L   L      D  L++  ++   G+ PD   YN+L++ 
Sbjct: 367 LDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSG 426

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK GR+    V+L  +L     PDA    +L+ G        EA  LF      G  P 
Sbjct: 427 LCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPG 486

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V  Y  +I G C+ G    AL  F+ M  G      +  PD  TYSTI DG  K   +  
Sbjct: 487 VVGYNAMIKGYCKFGMMKDALLCFKRMIQG------LHSPDEFTYSTIIDGYIKMNDLHG 540

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  +F  M      P+VVTYT LI GFC + D N A+  F +M+   ++PNVVT+ +++ 
Sbjct: 541 ALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIG 600

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG------FCLTGRVNRAKELFVSME 295
             CK   + +A    E M+     P+   YN LM+G      F ++ + +   E  + +E
Sbjct: 601 CFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNGLTNNVDFVISNQRSEQTENSLVLE 660

Query: 296 SNGCM------RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           S G M      R   SY  ++   C++K ++ AL L  +M+SKG  P  V+
Sbjct: 661 SFGMMISDGWDRRAASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVS 711



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 154/329 (46%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L     K    +    LFK L   G  P + TY  +IN FCK G+      +
Sbjct: 205 PNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKL 264

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +           + ++I         +EAA     +   GC PD+ TY  LI G C 
Sbjct: 265 LVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCS 324

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L E+      + G++  P+ ++Y+ +    CK+G   +A +L +KM +   
Sbjct: 325 CGEVHKAEQLLEQAI----KRGLL--PNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGH 378

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VTY +LI G   A + + A  +  +M+++GV P+   +NV+M+ LCK G++  A  
Sbjct: 379 KPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKV 438

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M+   V PDA +  TL+DGF   G    AK+LF      G    V  Y  +I GYC
Sbjct: 439 LLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYC 498

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   ++ AL  +  M+     P   TY+T
Sbjct: 499 KFGMMKDALLCFKRMIQGLHSPDEFTYST 527



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 153/311 (49%), Gaps = 9/311 (2%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR--SCFTPDAVTF 90
           +  V SL K + S  L P    ++++I+ F   G V          ++   C  PD  + 
Sbjct: 82  FSEVESLLKIMKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHC-VPDVFSC 140

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
            SL+  L    ++  A  ++ ++     + D +T   ++ GLC+ G       L E+   
Sbjct: 141 NSLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEK--- 197

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
               +G  C P+ + Y+T+ DG CK+G  ++A  LF ++K +   P V TY ++I GFC 
Sbjct: 198 ---RWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCK 254

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
              +     L +EM ++G+  ++  +N I++   K+G   EA+  +  MI+ G  PD + 
Sbjct: 255 KGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMAT 314

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           YN L+ G C  G V++A++L       G + +  SY  LI+ YCK  E   AL L  +M 
Sbjct: 315 YNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMS 374

Query: 331 SKGIRPTVVTY 341
            +G +P +VTY
Sbjct: 375 ERGHKPDLVTY 385



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 153/341 (44%), Gaps = 18/341 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  L     K   Y   L L  +++  G  PDL TY  LI+     G V     V
Sbjct: 345 PNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTV 404

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     PDA  +  L+ GLC + R+  A  L  ++      PD F   TL++G  R
Sbjct: 405 RNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIR 464

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  LFE       E G+   P  + Y+ +  G CK G +  A   F +M     
Sbjct: 465 HGDFEEAKKLFELTI----EKGI--DPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLH 518

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD  TY+++I G+   ND + A  +F  M+    +PNVVT+ +++N  C +G ++ A +
Sbjct: 519 SPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEK 578

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + M+ + ++P+   Y  L+  FC    + +A   F  M    C+ +  +Y  L+NG  
Sbjct: 579 TFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNGLT 638

Query: 315 KN----------KEIEGALSL--YSEMLSKGIRPTVVTYNT 343
            N          ++ E +L L  +  M+S G      +YN+
Sbjct: 639 NNVDFVISNQRSEQTENSLVLESFGMMISDGWDRRAASYNS 679



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 128/297 (43%), Gaps = 28/297 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +     K       L  FKR+      PD +TY+ +I+ + KM  +     +
Sbjct: 485 PGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRM 544

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G +++    P+ VT+T LI G C    I  A   F ++ +   KP+V TYT LI   C+
Sbjct: 545 FGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCK 604

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE-GFVDKAK---------- 183
             +   A + FE+M          C P+ +TY+ + +GL     FV   +          
Sbjct: 605 GVNLTKACSFFEQMLMEK------CLPNDVTYNYLMNGLTNNVDFVISNQRSEQTENSLV 658

Query: 184 -ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E F  M  +  +    +Y S++   C       A  L  +MM +G  P+ V+   +++ 
Sbjct: 659 LESFGMMISDGWDRRAASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVALLHG 718

Query: 243 LCKNGKMDE-----ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           LC  G+  +     + +L E  +Q+ V+     Y+  +D F   G+ + A  +  S+
Sbjct: 719 LCLEGRSQDWNNVISCKLNERELQVAVK-----YSEKLDAFLSQGQTSEASLILHSL 770



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 1/183 (0%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLK-MKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           P    +S +       G VD+A E +   +K  +  PDV +  SL+           A  
Sbjct: 99  PTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEIACK 158

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           ++ EM+D+  + +  T  +++  LCK GK+++  +L+E     G  P+   YNTL+DG+C
Sbjct: 159 VYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYC 218

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G   RA  LF  ++  G +  V +YG +ING+CK  + E    L  EM  +G+  ++ 
Sbjct: 219 KKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIH 278

Query: 340 TYN 342
            YN
Sbjct: 279 IYN 281



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 1/131 (0%)

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG-VRPDASVYN 272
           ++E + L   M  + + P    F+++++     G +D A       I+I    PD    N
Sbjct: 82  FSEVESLLKIMKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCN 141

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +L++     G+V  A +++  M       D ++  I++ G CK  ++E    L  +   +
Sbjct: 142 SLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGR 201

Query: 333 GIRPTVVTYNT 343
           G  P +V YNT
Sbjct: 202 GCMPNIVFYNT 212



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 12/113 (10%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHY------------DTVLSLFKRLNSIGLF 49
           C F   + M    P   ++N L   L  N  +              VL  F  + S G  
Sbjct: 612 CSFFEQMLMEKCLPNDVTYNYLMNGLTNNVDFVISNQRSEQTENSLVLESFGMMISDGWD 671

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
               +YN ++ C C+   V     +  +++   F PD V+  +L+ GLC E R
Sbjct: 672 RRAASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVALLHGLCLEGR 724


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 168/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYMPSVVT 418



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G M  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +   ++ P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 89/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+   K G++  A  + + + +  +RP    +NTLM+G+ 
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  V
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 163/314 (51%), Gaps = 9/314 (2%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           +N+  D+   +F R++  G  P+  TY+ LIN  C  GRV+     +  + R    P   
Sbjct: 275 RNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVH 334

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           TFT+ I  LC   RI +A  +F  ++  GCKP+V+TYT+LI+G      + +A+ LF  M
Sbjct: 335 TFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG---QRVSRMAIGLFHRM 391

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           +      GVV  P+ +TY+ + + L +   +D A  +F  M      P+  +Y  LIRG+
Sbjct: 392 SRD----GVV--PNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGY 445

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C   D  +A  +   M+     P +VT+N+I+   C +G  D A R+LELM   G +PD 
Sbjct: 446 CTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDE 505

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y  L+ GFC   ++  A  +F  M   G   +  +Y  LI+GYCK+++++ A  +   
Sbjct: 506 WSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLER 565

Query: 329 MLSKGIRPTVVTYN 342
           M   G RP V TYN
Sbjct: 566 MKRSGCRPNVQTYN 579



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 176/358 (49%), Gaps = 44/358 (12%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++  L   L K     TV+  + ++   GL P+L  YN +IN  CK G V     ++ ++
Sbjct: 195 TYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKV 254

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +S   PD  T+TS+I G C    +  A  +F ++   GC+P+  TY+TLINGLC +G  
Sbjct: 255 FKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRV 314

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL+   EM       GV+  P   T++     LC  G ++ A ++F+ MK +   P+V
Sbjct: 315 NEALDFISEMT----RHGVL--PTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNV 368

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TYTSLI G   +     A  LF  M   GV PN VT+N +MN L +N ++D A  +  +
Sbjct: 369 YTYTSLISGQRVS---RMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNM 425

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS------------------------- 293
           M + G  P+ S YN L+ G+C  G   +A  +  +                         
Sbjct: 426 MGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGD 485

Query: 294 ----------MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                     M++NGC  D +SY  LI+G+CK  ++E A  +++EM+ +G+ P  VTY
Sbjct: 486 TDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTY 543



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 170/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L +N   D+ L +F  +   G  P+  +YN LI  +C +G       +
Sbjct: 398 PNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSM 457

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L+   TP  VT+  +IKG C       A  +   ++A GC+PD ++YT LI+G C+
Sbjct: 458 LTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCK 517

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                +A  +F EM +       +C P+ +TY+ +  G CK+  +D A  +  +MK    
Sbjct: 518 ISKMELASGMFNEMMDRG-----LC-PNEVTYTALISGYCKDEKLDCAARMLERMKRSGC 571

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY  LI G    N+++ A+ L   M+++ + P+VVT++ ++N LC NG +  A  
Sbjct: 572 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALE 631

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M++ G  P+   Y++L+      GRV  A+E+F  ++  G + D  +Y  +I    
Sbjct: 632 MFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCV 691

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            + +++ A     EM++ G +PT+ TY+
Sbjct: 692 MSGKVDRAFDFLGEMINAGCQPTLQTYD 719



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 8/307 (2%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            + LF R++  G+ P+  TYN L+N   +   +    +V   + +    P+  ++  LI+
Sbjct: 384 AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIR 443

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGE 154
           G C      +A ++ T +      P + TY  +I G C +G T VA+ + E M ANG   
Sbjct: 444 GYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANG--- 500

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
               C+PD  +Y+ +  G CK   ++ A  +F +M D  + P+ VTYT+LI G+C     
Sbjct: 501 ----CQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKL 556

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           + A  +   M   G +PNV T+NV+++ L K      A  L ++M++  + PD   Y+T+
Sbjct: 557 DCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTV 616

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++G C  G +  A E+F  M  +GC+ ++ +Y  LI    +   +E A  ++SE+  +G+
Sbjct: 617 INGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGL 676

Query: 335 RPTVVTY 341
            P  VTY
Sbjct: 677 IPDEVTY 683



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 164/342 (47%), Gaps = 11/342 (3%)

Query: 4   FDYMLRM--HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            D++  M  H   P V +F      L      +    +F  +   G  P++YTY  LI+ 
Sbjct: 318 LDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG 377

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
             ++ R++ G  +  R+ R    P+ VT+ +L+  L     I  A  +F  +   GC P+
Sbjct: 378 -QRVSRMAIG--LFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPN 434

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             +Y  LI G C  G T  A+++   M  G         P  +TY+ I  G C  G  D 
Sbjct: 435 TSSYNELIRGYCTIGDTEKAMSMLTNMLKGRP------TPTLVTYNIIIKGYCDSGDTDV 488

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  +   MK     PD  +YT LI GFC  +    A  +F EMMD+G+ PN VT+  +++
Sbjct: 489 AIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALIS 548

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK+ K+D A+R+LE M + G RP+   YN L+ G       + A+EL   M       
Sbjct: 549 GYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISP 608

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           DV +Y  +ING C N  I  AL ++++M+  G  P + TY++
Sbjct: 609 DVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSS 650



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 143/273 (52%), Gaps = 9/273 (3%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ML+  P+P  V ++NI+      +   D  + + + + + G  PD ++Y  LI+ FCK+ 
Sbjct: 461 MLKGRPTPTLV-TYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKIS 519

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++     +   ++     P+ VT+T+LI G C + ++  AA +  +++  GC+P+V TY 
Sbjct: 520 KMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYN 579

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI+GL +  +   A  L + M            PD +TYST+ +GLC  G +  A E+F
Sbjct: 580 VLIHGLTKQNNFSGAEELCKVMLEEK------ISPDVVTYSTVINGLCNNGAIPLALEMF 633

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC-K 245
            KM      P++ TY+SLI+         EA+ +F E+  QG+ P+ VT+ V M E+C  
Sbjct: 634 NKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTY-VKMIEVCVM 692

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
           +GK+D A   L  MI  G +P    Y+ L+ G 
Sbjct: 693 SGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL 725



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 136/272 (50%), Gaps = 11/272 (4%)

Query: 74  VLGRILRSCFTPDAV--TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           V  R+L S   P AV      +IK    ++ + +A          G K  +FTYTTL+  
Sbjct: 143 VAMRLLESRDRPAAVGRARIHMIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQ 202

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           L +   T   ++ + ++           +P+ + Y+++ + LCK+G V  A+ +  K+  
Sbjct: 203 LNKLNMTSTVMDRYHQILREG------LQPNLLIYNSVINALCKDGNVRDAESIINKVFK 256

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             + PD  TYTS+I G+C   D + A  +F  M ++G +PN  T++ ++N LC +G+++E
Sbjct: 257 SGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNE 316

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A   +  M + GV P    +   +   C  GR+  A ++F+ M+  GC  +V++Y  LI+
Sbjct: 317 ALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLIS 376

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G    +    A+ L+  M   G+ P  VTYN 
Sbjct: 377 G---QRVSRMAIGLFHRMSRDGVVPNTVTYNA 405



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 120/300 (40%), Gaps = 23/300 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L  N      L +F ++   G  P+L+TY+ LI    + GRV     +
Sbjct: 608 PDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEM 667

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    PD VT+  +I+      ++  A     ++   GC+P + TY  LI GL  
Sbjct: 668 FSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQN 727

Query: 135 TG--HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
               H +VAL                  P+A + ST  D +  +   D    L  K+ + 
Sbjct: 728 EMVYHKLVAL------------------PNAASTSTFDDQIINK---DVISVLSSKLAEL 766

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           +       Y +L+     +  W EA  L+  M+ Q   PN  T+   +  L +  K+D A
Sbjct: 767 DFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLA 826

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             + + M         + Y  L+   C   R   A+ +F  M S     D   + ILING
Sbjct: 827 MDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILING 886



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 112/279 (40%), Gaps = 29/279 (10%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ M++ H   P + +++ L   L +    +    +F  L   GL PD  TY  +I   
Sbjct: 632 MFNKMVK-HGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVC 690

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL------------- 109
              G+V   F  LG ++ +   P   T+  LIKGL  E    +  AL             
Sbjct: 691 VMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQI 750

Query: 110 ---------FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160
                     +KL     +     Y  L++ L R+G    A NL+  M + +      C 
Sbjct: 751 INKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQ-----C- 804

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P+  TY      L +   VD A ++F  M D+     +  Y  LI   C  +   EA+ +
Sbjct: 805 PNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFV 864

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           F +M+ + +  + + + +++N L   G  D     L +M
Sbjct: 865 FEKMLSRALNADEIVWTILINGLLGAGYKDLCMEFLHIM 903


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 175/330 (53%), Gaps = 11/330 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV--SPGFVV 74
           V +F+ L     ++ + D  + +F+ + S GL P+L TYN +I+  C  G V  +    +
Sbjct: 220 VYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDA-CGKGGVDFNRAAEI 278

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA-LFTKLRAFGCKPDVFTYTTLINGLC 133
              +LR+   PD +TF SL+  +C    + EAA  LF+++   G + D+FTY TL++ +C
Sbjct: 279 FDEMLRNGVQPDRITFNSLL-AVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVC 337

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A  +  EM   +        P+ +TYST+ DG  K G +D+A  LF +MK  +
Sbjct: 338 KGGQMDLAFQIMSEMPRKH------IMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFAS 391

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I  D V+Y +L+  +     + EA  +  EM   G++ + VT+N ++    K GK +E  
Sbjct: 392 IGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVK 451

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R+ E M    + P+   Y+TL+D +   G    A E+F   +  G   DV  Y  LI+  
Sbjct: 452 RVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDAL 511

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CKN  +E A+S   EM  +GIRP VVTYN+
Sbjct: 512 CKNGLVESAVSFLDEMTKEGIRPNVVTYNS 541



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 152/280 (54%), Gaps = 7/280 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD MLR    P  + +FN L     +   ++   +LF  +   G+  D++TYN L++  
Sbjct: 278 IFDEMLRNGVQPDRI-TFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAV 336

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G++   F ++  + R    P+ VT++++I G     R+ EA  LF +++      D 
Sbjct: 337 CKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDR 396

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y TL++   + G    ALN+ +EM +         K DA+TY+ +  G  K+G  ++ 
Sbjct: 397 VSYNTLLSIYAKLGRFEEALNVCKEMESSG------IKKDAVTYNALLGGYGKQGKYEEV 450

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           K +F +MK E I P+++TY++LI  +     + EA  +F E    G++ +VV ++ +++ 
Sbjct: 451 KRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDA 510

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           LCKNG ++ A   L+ M + G+RP+   YN+++D F  +G
Sbjct: 511 LCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSG 550



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 17/226 (7%)

Query: 125 YTTLINGLCRTGHTIVALNLFE------EMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           YT L+  L   G    A+  FE      +  N  G+            S +   L + G 
Sbjct: 151 YTFLLRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLA----------SAMISILGRLGQ 200

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           V+ AK +F    +E     V  +++LI  +  +   +EA  +F  M   G++PN+VT+N 
Sbjct: 201 VELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNA 260

Query: 239 IMNELCKNG-KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           +++   K G   + A+ + + M++ GV+PD   +N+L+      G    A+ LF  M   
Sbjct: 261 VIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYR 320

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G  +D+F+Y  L++  CK  +++ A  + SEM  K I P VVTY+T
Sbjct: 321 GIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYST 366



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 35/268 (13%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+N L    AK   ++  L++ K + S G+  D  TYN L+  + K G+      V   +
Sbjct: 398 SYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEM 457

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ +T+++LI          EA  +F + +  G K DV  Y+ LI+ LC+ G  
Sbjct: 458 KAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLV 517

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF------------VDKAKELF 186
             A++  +EM           +P+ +TY++I D   + G             V K     
Sbjct: 518 ESAVSFLDEMTKEG------IRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSS 571

Query: 187 LKMKDENINPDVVTY--TSLIRGF--------CYANDWNEAK-------CLFIEMMDQGV 229
           LK+ ++    +V       +I+ F        C+A   N  +        +F +M +  +
Sbjct: 572 LKVVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDI 631

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLE 257
           +PNVVTF+ I+N   +    ++AS LLE
Sbjct: 632 KPNVVTFSAILNACSRCNSFEDASMLLE 659


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 171/372 (45%), Gaps = 31/372 (8%)

Query: 3    IFDYMLRMHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            ++D  L M      P V ++N +   L ++   +     F  + ++GL PD+ TYN L+N
Sbjct: 1209 VYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLN 1268

Query: 61   CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             +CK G +    ++ G + R+   P  +T+  LI G C    + EA  L  ++   GC P
Sbjct: 1269 GYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLP 1328

Query: 121  DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE---------------FGVVCKP---- 161
            +V TYT L+ G        +A   F+EM +   +                G + +     
Sbjct: 1329 NVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELR 1388

Query: 162  ----------DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                      D +TY+ +  GLCK G +  AKEL +KM    + PD +TYT LI   C  
Sbjct: 1389 EVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCER 1448

Query: 212  NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                EA+ +F  M+  G+ P+ VTF VI++  C+ G +  A      M++ GV P+   Y
Sbjct: 1449 GLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITY 1508

Query: 272  NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
            N L+   C  GR   A   F  M   G + + ++Y +LI+G CK    E A+  Y EM  
Sbjct: 1509 NVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQ 1568

Query: 332  KGIRPTVVTYNT 343
             GI P  +T+  
Sbjct: 1569 NGIHPDYLTHKA 1580



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 156/324 (48%), Gaps = 13/324 (4%)

Query: 26   CLAKNKHYDTV----LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
            C A++   DT     LS F+ + S G+ PD+   N ++       R      V   +L  
Sbjct: 1054 CKARDATLDTCSTLCLSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLEL 1113

Query: 82   CFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGLCRTGHTI 139
               P  VT+ +L+     E R  + A L  ++  R  GC P+  TY  +I GL R G   
Sbjct: 1114 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 1173

Query: 140  VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
             A  L E M        +  K  + TY+ +  GL   G V K  +L L+M++E I P VV
Sbjct: 1174 EAAELVEGMR-------LSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVV 1226

Query: 200  TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            TY ++I G   +     A+  F EM   G+ P+V+T+N ++N  CK G + EA  L   +
Sbjct: 1227 TYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDL 1286

Query: 260  IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
             + G+ P    YN L+DG+C  G +  A+ L   M   GC+ +V +Y IL+ G    + +
Sbjct: 1287 RRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSL 1346

Query: 320  EGALSLYSEMLSKGIRPTVVTYNT 343
              A   + EMLSKG++P    YNT
Sbjct: 1347 AMAREFFDEMLSKGLQPDCFAYNT 1370



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 158/327 (48%), Gaps = 12/327 (3%)

Query: 16   PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
            P+ +  +  GC+ K      V  L   + + G+ P + TYN +I+   + G V    V  
Sbjct: 1195 PLITGLLARGCVKK------VYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKF 1248

Query: 76   GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
              +      PD +T+ SL+ G C    + EA  LF  LR  G  P V TY  LI+G CR 
Sbjct: 1249 AEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRL 1308

Query: 136  GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
            G    A  L EEM    GE G  C P+  TY+ +  G      +  A+E F +M  + + 
Sbjct: 1309 GDLEEARILKEEM----GEQG--CLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQ 1362

Query: 196  PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
            PD   Y + I       D   A  L   +M +G+  + VT+N++++ LCK G + +A  L
Sbjct: 1363 PDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKEL 1422

Query: 256  LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
               M+  G++PD   Y  L+   C  G +  A+++F +M S+G +    ++ ++I+ YC+
Sbjct: 1423 QMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCR 1482

Query: 316  NKEIEGALSLYSEMLSKGIRPTVVTYN 342
               +  A   + +ML +G+ P  +TYN
Sbjct: 1483 RGNLYSAYGWFRKMLEEGVEPNEITYN 1509



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 170/368 (46%), Gaps = 44/368 (11%)

Query: 11   HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
            H   P V   N +   L     +D + ++ + +  +G+ P + TYN L++ F K GR   
Sbjct: 1078 HGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGRKDK 1137

Query: 71   GFVVLGRILR--SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
              ++L  +    S   P+ VT+  +I GL  +  + EAA L   +R    K   FTY  L
Sbjct: 1138 VAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMR-LSKKASSFTYNPL 1196

Query: 129  INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
            I GL   G      +L  EM N     G++  P  +TY+ +  GL + G V+ A+  F +
Sbjct: 1197 ITGLLARGCVKKVYDLQLEMENE----GIM--PTVVTYNAMIHGLLQSGLVEAAQVKFAE 1250

Query: 189  MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
            M+   + PDV+TY SL+ G+C A +  EA  LF ++   G+ P V+T+N++++  C+ G 
Sbjct: 1251 MRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGD 1310

Query: 249  MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS--- 305
            ++EA  L E M + G  P+   Y  LM G      +  A+E F  M S G   D F+   
Sbjct: 1311 LEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNT 1370

Query: 306  --------------------------------YGILINGYCKNKEIEGALSLYSEMLSKG 333
                                            Y ILI+G CK   ++ A  L  +M+S G
Sbjct: 1371 RICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNG 1430

Query: 334  IRPTVVTY 341
            ++P  +TY
Sbjct: 1431 LQPDCITY 1438


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 168/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMIDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYMPSVVT 418



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G M  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +   ++ P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + MI  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 106/232 (45%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTITD 171
           +Y T+I+ LC       A  L + + +  G+      F  +       + D   +S +  
Sbjct: 15  SYCTMIHFLCTHQMRPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 74

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   K+        T   ++        +      + E ++ G   
Sbjct: 75  AYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPA 134

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+   K G++  A  + + + +  +RP    +NTLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +M+++G   DV++Y +LING CK  +++ A  L+ EM+  G+ P  VT+ T
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTT 246


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 174/360 (48%), Gaps = 41/360 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+NIL   L      D  L     +   G+ PD+ TYN L   F  +G +S    V+ ++
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKM 367

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L     PD VT+T+LI G C    I EA  L  +  + G K +V  Y  L++ LC+ G  
Sbjct: 368 LLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRI 427

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM--------- 189
             AL LF+EM     E      PD I YS +  GLCKEGFV +A +L+ +M         
Sbjct: 428 EEALTLFDEMETLRLE------PDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHH 481

Query: 190 -----------KDENINP---------------DVVTYTSLIRGFCYANDWNEAKCLFIE 223
                      K+ NI+                DVV Y  +I G+   +   EA  L+ +
Sbjct: 482 FAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYK 541

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+++G+ P+VVTFN ++N  C+ G + EA ++LE++   G+ P    Y TLM+ +C  G 
Sbjct: 542 MIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGN 601

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +         ME+N  +    +Y +LI G C+  ++  +L L   M +KG+ P  VTYNT
Sbjct: 602 MQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNT 661



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 167/369 (45%), Gaps = 41/369 (11%)

Query: 8   LRMHPSPPPVCSFN------ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +  H   P V ++N      +L G ++  +       + +++   GL PDL TY  LI  
Sbjct: 332 MEKHGVEPDVVTYNTLAKGFLLLGLMSGAR------KVVQKMLLQGLNPDLVTYTTLICG 385

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C+MG +     +    L   F  + + +  L+  LC   RI EA  LF ++     +PD
Sbjct: 386 HCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPD 445

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEM--------------------ANGN-----GEFG 156
              Y+ LI+GLC+ G    A  L+E+M                     NGN       F 
Sbjct: 446 FIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFD 505

Query: 157 VVCK----PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
              +     D + Y+ + DG  +   + +A +L+ KM +  I P VVT+ +LI GFC   
Sbjct: 506 TWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRG 565

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           D  EA+ +   +  +G+ P+VVT+  +MN  C+ G M E    L  M    V P    Y 
Sbjct: 566 DLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYT 625

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+ G C   +++ + +L   M + G + D  +Y  +I  +CK KEI  AL LY+ ML  
Sbjct: 626 VLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLH 685

Query: 333 GIRPTVVTY 341
              PT VTY
Sbjct: 686 NCDPTQVTY 694



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 163/352 (46%), Gaps = 42/352 (11%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L   +H D +  ++  +   G      T +ILI+  C+  ++      L         P 
Sbjct: 212 LHNMRHTDIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDS-NKVVGPS 270

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+  +++   C    I  A + F  +   G   D F+Y  L++GLC  G    AL   +
Sbjct: 271 IVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTD 330

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           +M     E      PD +TY+T+  G    G +  A+++  KM  + +NPD+VTYT+LI 
Sbjct: 331 DMEKHGVE------PDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLIC 384

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   +  EA  L  E + +G + NV+ +N++++ LCK G+++EA  L + M  + + P
Sbjct: 385 GHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEP 444

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSME-------------------SNG--------- 298
           D  VY+ L+ G C  G V RA +L+  M                     NG         
Sbjct: 445 DFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYF 504

Query: 299 -------CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                   M DV  Y I+I+GY +   I  A+ LY +M+ +GI P+VVT+NT
Sbjct: 505 DTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNT 556



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 157/337 (46%), Gaps = 9/337 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +++ M      P       +L G L KN +     + F     + L  D+  YNI+I+
Sbjct: 466 YQLYEQMRLKRKFPHHFAQRAVLLG-LFKNGNISEARNYFDTWTRMDLMEDVVLYNIMID 524

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            + ++  ++    +  +++    TP  VTF +LI G C    +MEA  +   +R  G  P
Sbjct: 525 GYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVP 584

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
            V TYTTL+N  C  G+     +   EM AN          P  +TY+ +  GLC++  +
Sbjct: 585 SVVTYTTLMNAYCEVGNMQEMFHFLHEMEANA-------VVPTHVTYTVLIKGLCRQNKM 637

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            ++ +L   M  + + PD VTY ++I+ FC   +  +A  L+  M+     P  VT+ V+
Sbjct: 638 HESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVL 697

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +N LC  G + +  R++  +    +      Y T++   C  G+V++A   F  M + G 
Sbjct: 698 INALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGF 757

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           +  +  Y  +IN  CK   I  A   +  MLS+G+ P
Sbjct: 758 VISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTP 794



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 156/327 (47%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N+L  CL K    +  L+LF  + ++ L PD   Y+ILI+  CK G V   + +  
Sbjct: 411 VIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYE 470

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++      P      +++ GL     I EA   F          DV  Y  +I+G  R  
Sbjct: 471 QMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLD 530

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ L+ +M     E G+   P  +T++T+ +G C+ G + +A+++   ++ + + P
Sbjct: 531 GIAEAMQLYYKMI----ERGIT--PSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVP 584

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            VVTYT+L+  +C   +  E      EM    V P  VT+ V++  LC+  KM E+ +LL
Sbjct: 585 SVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLL 644

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E M   G+ PD+  YNT++  FC    + +A +L+  M  + C     +Y +LIN  C  
Sbjct: 645 EYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIF 704

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +++    +   +  + I    VTY T
Sbjct: 705 GDLKDVDRMVVSIEDRNITLKKVTYMT 731



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 133/284 (46%), Gaps = 6/284 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L     +         + + +   GL P + TY  L+N +C++G +   F  
Sbjct: 549 PSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHF 608

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P  VT+T LIKGLC ++++ E+  L   + A G  PD  TY T+I   C+
Sbjct: 609 LHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCK 668

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L+  M   N      C P  +TY  + + LC  G +     + + ++D NI
Sbjct: 669 GKEITKALQLYNMMLLHN------CDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNI 722

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               VTY ++I+  C     ++A   F +M+ +G   ++  ++ ++N LCK G + EA  
Sbjct: 723 TLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKY 782

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
              +M+  GV PD  +  T+++ F   G  +   E    +  +G
Sbjct: 783 FFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFEFLAMVVKSG 826



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 129/300 (43%), Gaps = 9/300 (3%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD   RM      V  +NI+     +       + L+ ++   G+ P + T+N LIN FC
Sbjct: 504 FDTWTRMDLMEDVVL-YNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFC 562

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           + G +     +L  I      P  VT+T+L+   C    + E      ++ A    P   
Sbjct: 563 RRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHV 622

Query: 124 TYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           TYT LI GLCR      +L L E M A G         PD++TY+TI    CK   + KA
Sbjct: 623 TYTVLIKGLCRQNKMHESLQLLEYMYAKG-------LLPDSVTYNTIIQCFCKGKEITKA 675

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L+  M   N +P  VTY  LI   C   D  +   + + + D+ +    VT+  I+  
Sbjct: 676 LQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKA 735

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G++ +A      M+  G       Y+ +++  C  G +  AK  FV M S G   D
Sbjct: 736 HCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPD 795



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 14/201 (6%)

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L E+  N +   G+V    A  YS       +   +  A  +  KMKD N    V TY S
Sbjct: 159 LLEKFRNWDSN-GLVWDMLAFAYS-------RHEMIHDALFVIAKMKDLNFQASVPTYNS 210

Query: 204 LIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           L+    + +  W+    ++ E+   G   +  T +++++ LC+  K+++A   L    ++
Sbjct: 211 LLHNMRHTDIMWD----VYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDSNKV 266

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
            V P     NT+M  FC  G ++ A+  F  M  NG + D FSY IL++G C    ++ A
Sbjct: 267 -VGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEA 325

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           L    +M   G+ P VVTYNT
Sbjct: 326 LGFTDDMEKHGVEPDVVTYNT 346


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 165/358 (46%), Gaps = 29/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L K  + +     F  + + GL PDL TYN LIN +CK G +     +
Sbjct: 333 PTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCL 392

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G + R+   P  +T+  LI G C    +  A  L  ++    C PDV TYT L+NG C 
Sbjct: 393 FGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCM 452

Query: 135 TGHTIVALNLFEEMANGNGE---------------FGVVC--------------KPDAIT 165
             +  +    F+EM +   E                G +                 D +T
Sbjct: 453 VRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVT 512

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ + DGLCK G +  A  L++KM  + +  D VTYT LI   C      EAK +F  M+
Sbjct: 513 YNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMV 572

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G+ P+VVT+ + ++  C+ G +  A      M++ GV P+   YN LM   C  GR  
Sbjct: 573 ASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTE 632

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A + F  M   G + + ++Y +LI+G CK      A+ LY EM  KGI P   T+N 
Sbjct: 633 SAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNA 690



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 170/342 (49%), Gaps = 12/342 (3%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  M R H   P V   N +   L     +D + +++  +  +G+ P ++TYN L++ FC
Sbjct: 182 FQEMAR-HGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFC 240

Query: 64  KMGRVSPGFVVLGRI---LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           K GR+     +L  +      C  P+ VT+  +I GL  +  + +AA L   +R    K 
Sbjct: 241 KAGRMDQAVALLKDMEARAAGCL-PNDVTYNVVINGLARKGELEKAAQLVDIMR-LSKKA 298

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
             FTY  LI GL        A  L  EM N     G+V  P  +TY+T+ DGL K G  +
Sbjct: 299 SAFTYNPLITGLLARDFVEKAGALLLEMENE----GIV--PTVVTYNTLIDGLFKTGNAE 352

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A+  F +M+ + + PD++TY SLI G+C A +  +A CLF ++   G+ P V+T+N+++
Sbjct: 353 AAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILI 412

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  C+ G ++ A RL E M +    PD   Y  LM+G C+   +   +  F  M S G  
Sbjct: 413 DGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLE 472

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            D F+Y   I+       I  A  L  EM+ +GI    VTYN
Sbjct: 473 PDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYN 514



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 152/309 (49%), Gaps = 9/309 (2%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           LS F+ +   G+ P +   N ++       R      V   +L+    P   T+ +L+  
Sbjct: 179 LSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDS 238

Query: 97  LCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            C   R+ +A AL   +  RA GC P+  TY  +INGL R G    A  L + M      
Sbjct: 239 FCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMR----- 293

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
             +  K  A TY+ +  GL    FV+KA  L L+M++E I P VVTY +LI G     + 
Sbjct: 294 --LSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNA 351

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             A+  F EM  +G+ P+++T+N ++N  CK G + +A  L   + + G+ P    YN L
Sbjct: 352 EAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNIL 411

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DG+C  G +  A+ L   M    C+ DV +Y IL+NG C  + +      + EMLSKG+
Sbjct: 412 IDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGL 471

Query: 335 RPTVVTYNT 343
            P    YNT
Sbjct: 472 EPDCFAYNT 480


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 168/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYMPSVVT 418



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A     +M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G M  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +   ++ P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 89/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+   K G++  A  + + + +  +RP    +NTLM+G+ 
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  V
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 177/331 (53%), Gaps = 9/331 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P PV +FN+L   L+KN        L   +   G  P+  TYN LI+  C  G++     
Sbjct: 242 PNPV-TFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALS 300

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L +++ S   P+ VT+ ++I GL  + R  +   +   +   G K + + Y++LI+GL 
Sbjct: 301 LLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLF 360

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G +  A+ L++EMA         CKP+ + Y    DGLC++   D+A+++  +M  + 
Sbjct: 361 KEGKSENAVRLWKEMAEKG------CKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKG 414

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+  TY+SL++GF    D  +A  ++ EMM Q ++ NVV  +V++N LC++G++ EA 
Sbjct: 415 FLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREAL 474

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN--GCMRDVFSYGILIN 311
            +   M+  G++PD   Y++++ G C  G V++  +LF  M+        DV +Y IL N
Sbjct: 475 TVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFN 534

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             C+   +  A+ L + ML +G  P  +T N
Sbjct: 535 ALCRQDNLTRAIDLLNSMLDEGCDPDSLTCN 565



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 168/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N++   L K    D  +  F+ +      PD++TY+ L+N  CK  RV     +
Sbjct: 172 PNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFL 231

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ VTF  LI  L     +  AA L   +   GC P+  TY TLI+GLC 
Sbjct: 232 LDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCL 291

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL+L E+M +        C P+ +TY TI +GL K+   +    + + M++   
Sbjct: 292 KGKLDKALSLLEKMVSSK------CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQ 345

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             +   Y+SLI G         A  L+ EM ++G +PNVV +   ++ LC++ K DEA  
Sbjct: 346 KANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAED 405

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+ M+  G  P+A  Y++LM GF   G   +A  ++  M S     +V    +L+NG C
Sbjct: 406 ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLC 465

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++  +  AL++++ ML +G++P VV Y++
Sbjct: 466 ESGRLREALTVWTHMLGEGLKPDVVAYSS 494



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 162/329 (49%), Gaps = 12/329 (3%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           F ++F    K       ++ F R+ N +     + ++N ++N   + G  S  F     +
Sbjct: 103 FILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHV 162

Query: 79  L---RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
                  F P+ +T+  +IK LC   +I  A   F ++    C PDVFTY+TL+NGLC+ 
Sbjct: 163 FGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKE 222

Query: 136 GHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                A+ L +EM A G       C P+ +T++ + D L K G + +A +L   M  +  
Sbjct: 223 RRVDEAVFLLDEMQAEG-------CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGC 275

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY +LI G C     ++A  L  +M+     PN VT+  I+N L K  + ++   
Sbjct: 276 VPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVH 335

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  M + G + +  +Y++L+ G    G+   A  L+  M   GC  +V  YG  I+G C
Sbjct: 336 ILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLC 395

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++++ + A  +  EMLSKG  P   TY++
Sbjct: 396 RDEKPDEAEDILQEMLSKGFLPNAFTYSS 424



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 142/274 (51%), Gaps = 10/274 (3%)

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIM-EAAALFTKL-RAFGCKPDVFTYTTLING 131
           VL R+ R         F  + K  C ++ +  EA   F ++     CK  V ++ +++N 
Sbjct: 87  VLDRMKREGRVLTETIFILIFKA-CGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNV 145

Query: 132 LCRTGHTIVALNLFEEM--ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           + + G    A   +  +  AN  G      +P+ +TY+ I   LCK G +D+A + F +M
Sbjct: 146 IIQEGDFSYAFKFYLHVFGANSKG-----FQPNLLTYNLIIKALCKLGQIDRAVDTFREM 200

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
             +N NPDV TY++L+ G C     +EA  L  EM  +G  PN VTFNV+++ L KNG +
Sbjct: 201 PLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDL 260

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
             A++L++ M   G  P+   YNTL+ G CL G++++A  L   M S+ C+ +  +YG +
Sbjct: 261 SRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTI 320

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ING  K +  E  + +   M  +G +     Y++
Sbjct: 321 INGLVKQRRAEDGVHILMSMEERGQKANEYIYSS 354



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 156/359 (43%), Gaps = 45/359 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L      D  LSL +++ S    P+  TY  +IN   K  R   G  +
Sbjct: 277 PNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHI 336

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +       +   ++SLI GL  E +   A  L+ ++   GCKP+V  Y   I+GLCR
Sbjct: 337 LMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCR 396

Query: 135 TGHTIVALNLFEEM--------------------ANGNGEFGVVCKPDAITY-------- 166
                 A ++ +EM                      G+ +  ++   + ++         
Sbjct: 397 DEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVC 456

Query: 167 -STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
            S + +GLC+ G + +A  ++  M  E + PDVV Y+S+I+G C     ++   LF EM 
Sbjct: 457 CSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ 516

Query: 226 DQ--GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
            Q    +P+VVT+N++ N LC+   +  A  LL  M+  G  PD+   N  ++   L  R
Sbjct: 517 CQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLE--TLRER 574

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +N  ++  + ++             L+    K +    AL +  EML + + P   T++
Sbjct: 575 INPPQDGRLFLDE------------LVVRLLKRERKLSALRIVEEMLLRFLPPEPSTWS 621


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 172/342 (50%), Gaps = 6/342 (1%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D M R+  + P V ++N L     K +     L L + +   G+ P L T+NI++ 
Sbjct: 333 FRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVK 392

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G++      L +I      PD +T+ +LI   C    + +A  L  ++   G K 
Sbjct: 393 SLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKM 452

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D FT  T++  LC+      A    EE+ +   + G V  PD ++Y T+     KE   +
Sbjct: 453 DTFTLNTVLYNLCKMKRYEDA----EELLHSPPQRGFV--PDEVSYGTVMAAYFKEYNPE 506

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  L+ +M +  + P + TY +LI+G C      EA     E++++G+ P+  T+N+I+
Sbjct: 507 PALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIII 566

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G ++ A R    M++   +PD    NTLM+G CL G++++A +LF S    G  
Sbjct: 567 HAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKK 626

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            DV +Y  LI   CK  +++ AL  + +M  KG++P   TYN
Sbjct: 627 VDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYN 668



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 170/339 (50%), Gaps = 23/339 (6%)

Query: 15  PPVCSFNILFGCLAKNKHY--DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P + + N +   L+++        L +F+ L  + L P+ YT+N+L++  C  G ++   
Sbjct: 169 PSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADAL 228

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
             L  +     +PDAVT+ +L+   C +  + EA AL  +++  G  P   TY TL++  
Sbjct: 229 ATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAF 288

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            R G    A  + E M      +G   +PD  TY+ +  GLC+ G VD+A     ++KDE
Sbjct: 289 ARLGWIKQATKVVESMT----AYGF--EPDLRTYNVLAVGLCQAGKVDEA----FRLKDE 338

Query: 193 -----NINPDVVTYTSLIRGFCYANDW---NEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
                   PDVVTY +L+   C+   W   ++A  L  EM D+GV+P +VT N+++  LC
Sbjct: 339 MERLSTALPDVVTYNTLVDA-CF--KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLC 395

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K GK++EA   LE + + G+ PD   YNTL+D +C  G V +A  L   M   G   D F
Sbjct: 396 KEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTF 455

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   ++   CK K  E A  L      +G  P  V+Y T
Sbjct: 456 TLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGT 494



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 8/336 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR+HP+     +FN+L             L+    +   GL PD  TYN L+N  C+ G 
Sbjct: 202 LRLHPN---HYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGM 258

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L R+ R    P   T+ +L+        I +A  +   + A+G +PD+ TY  
Sbjct: 259 LGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNV 318

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L  GLC+ G    A  L +EM     E      PD +TY+T+ D   K      A  L  
Sbjct: 319 LAVGLCQAGKVDEAFRLKDEM-----ERLSTALPDVVTYNTLVDACFKWRCSSDALRLLE 373

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M+D+ + P +VT+  +++  C      EA     ++ ++G+ P+V+T+N +++  CK G
Sbjct: 374 EMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAG 433

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            + +A  L++ M+  G++ D    NT++   C   R   A+EL  S    G + D  SYG
Sbjct: 434 NVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYG 493

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++  Y K    E AL L+ +M+ + + P++ TYNT
Sbjct: 494 TVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 9/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L    A+         + + + + G  PDL TYN+L    C+ G+V   F +
Sbjct: 276 PTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRL 335

Query: 75  LGRILR-SCFTPDAVTFTSLIKGLCAESR-IMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
              + R S   PD VT+ +L+   C + R   +A  L  ++R  G KP + T+  ++  L
Sbjct: 336 KDEMERLSTALPDVVTYNTLVDA-CFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSL 394

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    AL   E++A    E G+   PD ITY+T+ D  CK G V KA  L  +M  +
Sbjct: 395 CKEGKLEEALGKLEKIA----EEGLA--PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGK 448

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            +  D  T  +++   C    + +A+ L      +G  P+ V++  +M    K    + A
Sbjct: 449 GLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPA 508

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            RL + MI+  + P  S YNTL+ G C   R+  A +    +   G + D  +Y I+I+ 
Sbjct: 509 LRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHA 568

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           YCK  ++E A   +++M+    +P VVT NT
Sbjct: 569 YCKEGDLENAFRFHNKMVENSFKPDVVTCNT 599



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 156/319 (48%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + NI+   L K    +  L   +++   GL PD+ TYN LI+ +CK G V+  F +
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTL 441

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++      D  T  +++  LC   R  +A  L       G  PD  +Y T++    +
Sbjct: 442 MDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFK 501

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL L+++M     E  ++  P   TY+T+  GLC+   + +A +   ++ ++ +
Sbjct: 502 EYNPEPALRLWDQMI----ERKLI--PSISTYNTLIKGLCRMERLKEAIDKLNELVEKGL 555

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY  +I  +C   D   A     +M++   +P+VVT N +MN LC +GK+D+A +
Sbjct: 556 VPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALK 615

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E  ++ G + D   YNTL+   C  G V+ A   F  ME  G   D F+Y ++++   
Sbjct: 616 LFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALS 675

Query: 315 KNKEIEGALSLYSEMLSKG 333
           +    E A ++  ++   G
Sbjct: 676 EAGRSEEAHNMLHKLADSG 694



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 7/265 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L + +     +     L   GL PD  TYNI+I+ +CK G +   F  
Sbjct: 522 PSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRF 581

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ + F PD VT  +L+ GLC   ++ +A  LF      G K DV TY TLI  +C+
Sbjct: 582 HNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCK 641

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL+ F++M           +PDA TY+ +   L + G  ++A  +  K+ D   
Sbjct: 642 VGDVDTALHFFDDMEVKG------LQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGK 695

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV-TFNVIMNELCKNGKMDEAS 253
                    L        D  E +        +  Q N + T+   +N LC  G++ EA 
Sbjct: 696 LSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAK 755

Query: 254 RLLELMIQIGVRPDASVYNTLMDGF 278
            +L+ M+Q G+  D+S Y TLM+G 
Sbjct: 756 AVLDEMMQKGMPVDSSTYITLMEGL 780


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 174/360 (48%), Gaps = 41/360 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+NIL   L      D  L     +   G+ PD+ TYN L   F  +G +S    V+ ++
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKM 367

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L     PD VT+T+LI G C    I EA  L  +  + G K +V  Y  L++ LC+ G  
Sbjct: 368 LLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRI 427

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM--------- 189
             AL LF+EM     E      PD I YS +  GLCKEGFV +A +L+ +M         
Sbjct: 428 EEALTLFDEMETLRLE------PDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHH 481

Query: 190 -----------KDENINP---------------DVVTYTSLIRGFCYANDWNEAKCLFIE 223
                      K+ NI+                DVV Y  +I G+   +   EA  L+ +
Sbjct: 482 FAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYK 541

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+++G+ P+VVTFN ++N  C+ G + EA ++LE++   G+ P    Y TLM+ +C  G 
Sbjct: 542 MIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGN 601

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +         ME+N  +    +Y +LI G C+  ++  +L L   M +KG+ P  VTYNT
Sbjct: 602 MQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNT 661



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 167/369 (45%), Gaps = 41/369 (11%)

Query: 8   LRMHPSPPPVCSFN------ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           +  H   P V ++N      +L G ++  +       + +++   GL PDL TY  LI  
Sbjct: 332 MEKHGVEPDVVTYNTLAKGFLLLGLMSGAR------KVVQKMLLQGLNPDLVTYTTLICG 385

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C+MG +     +    L   F  + + +  L+  LC   RI EA  LF ++     +PD
Sbjct: 386 HCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPD 445

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEM--------------------ANGN-----GEFG 156
              Y+ LI+GLC+ G    A  L+E+M                     NGN       F 
Sbjct: 446 FIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFD 505

Query: 157 VVCK----PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
              +     D + Y+ + DG  +   + +A +L+ KM +  I P VVT+ +LI GFC   
Sbjct: 506 TWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRG 565

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           D  EA+ +   +  +G+ P+VVT+  +MN  C+ G M E    L  M    V P    Y 
Sbjct: 566 DLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYT 625

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+ G C   +++ + +L   M + G + D  +Y  +I  +CK KEI  AL LY+ ML  
Sbjct: 626 VLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLH 685

Query: 333 GIRPTVVTY 341
              PT VTY
Sbjct: 686 NCDPTQVTY 694



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 163/352 (46%), Gaps = 42/352 (11%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L   +H D +  ++  +   G      T +ILI+  C+  ++      L         P 
Sbjct: 212 LHNMRHTDIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDS-NKVVGPS 270

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+  +++   C    I  A + F  +   G   D F+Y  L++GLC  G    AL   +
Sbjct: 271 IVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTD 330

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           +M     E      PD +TY+T+  G    G +  A+++  KM  + +NPD+VTYT+LI 
Sbjct: 331 DMEKHGVE------PDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLIC 384

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   +  EA  L  E + +G + NV+ +N++++ LCK G+++EA  L + M  + + P
Sbjct: 385 GHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEP 444

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSME-------------------SNG--------- 298
           D  VY+ L+ G C  G V RA +L+  M                     NG         
Sbjct: 445 DFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYF 504

Query: 299 -------CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                   M DV  Y I+I+GY +   I  A+ LY +M+ +GI P+VVT+NT
Sbjct: 505 DTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNT 556



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 157/337 (46%), Gaps = 9/337 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +++ M      P       +L G L KN +     + F     + L  D+  YNI+I+
Sbjct: 466 YQLYEQMRLKRKFPHHFAQRAVLLG-LFKNGNISEARNYFDTWTRMDLMEDVVLYNIMID 524

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            + ++  ++    +  +++    TP  VTF +LI G C    +MEA  +   +R  G  P
Sbjct: 525 GYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVP 584

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
            V TYTTL+N  C  G+     +   EM AN          P  +TY+ +  GLC++  +
Sbjct: 585 SVVTYTTLMNAYCEVGNMQEMFHFLHEMEANA-------VVPTHVTYTVLIKGLCRQNKM 637

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            ++ +L   M  + + PD VTY ++I+ FC   +  +A  L+  M+     P  VT+ V+
Sbjct: 638 HESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVL 697

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +N LC  G + +  R++  +    +      Y T++   C  G+V++A   F  M + G 
Sbjct: 698 INALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGF 757

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           +  +  Y  +IN  CK   I  A   +  MLS+G+ P
Sbjct: 758 VISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTP 794



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 145/298 (48%), Gaps = 6/298 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N+L  CL K    +  L+LF  + ++ L PD   Y+ILI+  CK G V   + +  
Sbjct: 411 VIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYE 470

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++      P      +++ GL     I EA   F          DV  Y  +I+G  R  
Sbjct: 471 QMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLD 530

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ L+ +M     E G+   P  +T++T+ +G C+ G + +A+++   ++ + + P
Sbjct: 531 GIAEAMQLYYKMI----ERGIT--PSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVP 584

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            VVTYT+L+  +C   +  E      EM    V P  VT+ V++  LC+  KM E+ +LL
Sbjct: 585 SVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLL 644

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           E M   G+ PD+  YNT++  FC    + +A +L+  M  + C     +Y +LIN  C
Sbjct: 645 EYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALC 702



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 132/284 (46%), Gaps = 6/284 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L     +         + + +   GL P + TY  L+N +C++G +   F  
Sbjct: 549 PSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHF 608

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  +   P  VT+T LIKGLC ++++ E+  L   + A G  PD  TY T+I   C+
Sbjct: 609 LHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCK 668

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L+  M   N      C P  +TY  + + LC  G +     + + ++D NI
Sbjct: 669 GKEITKALQLYNMMLLHN------CDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNI 722

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
                TY ++I+  C     ++A   F +M+ +G   ++  ++ ++N LCK G + EA  
Sbjct: 723 TLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKY 782

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
              +M+  GV PD  +  T+++ F   G  +   E    +  +G
Sbjct: 783 FFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFEFLAMVVKSG 826



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 128/300 (42%), Gaps = 9/300 (3%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD   RM      V  +NI+     +       + L+ ++   G+ P + T+N LIN FC
Sbjct: 504 FDTWTRMDLMEDVVL-YNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFC 562

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           + G +     +L  I      P  VT+T+L+   C    + E      ++ A    P   
Sbjct: 563 RRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHV 622

Query: 124 TYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           TYT LI GLCR      +L L E M A G         PD++TY+TI    CK   + KA
Sbjct: 623 TYTVLIKGLCRQNKMHESLQLLEYMYAKG-------LLPDSVTYNTIIQCFCKGKEITKA 675

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L+  M   N +P  VTY  LI   C   D  +   + + + D+ +     T+  I+  
Sbjct: 676 LQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKA 735

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C  G++ +A      M+  G       Y+ +++  C  G +  AK  FV M S G   D
Sbjct: 736 HCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPD 795



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 14/201 (6%)

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L E+  N +   G+V    A  YS       +   +  A  +  KMKD N    V TY S
Sbjct: 159 LLEKFRNWDSN-GLVWDMLAFAYS-------RHEMIHDALFVIAKMKDLNFQASVPTYNS 210

Query: 204 LIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           L+    + +  W+    ++ E+   G   +  T +++++ LC+  K+++A   L    ++
Sbjct: 211 LLHNMRHTDIMWD----VYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDSNKV 266

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
            V P     NT+M  FC  G ++ A+  F  M  NG + D FSY IL++G C    ++ A
Sbjct: 267 -VGPSIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEA 325

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           L    +M   G+ P VVTYNT
Sbjct: 326 LGFTDDMEKHGVEPDVVTYNT 346


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 168/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYAPSVVT 418



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 6/252 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K  + D    L   + + G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L +   P+ VTFT+LI G C   R+  A  ++ ++ +    PD+ TY TLI GLC+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L +EM+          KPD ITY+T+ DG CKEG ++ A E   +M  ENI
Sbjct: 289 KGDLKQAQDLTDEMSMKG------LKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENI 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V YT+LI G C      +A+ +  EM+  G++P + T+ +I+NE CK G +   S+
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSK 402

Query: 255 LLELMIQIGVRP 266
           LL+ M + G  P
Sbjct: 403 LLKEMQRDGYAP 414



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 154/285 (54%), Gaps = 6/285 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C       A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 112/222 (50%), Gaps = 8/222 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++++L   L K    D    LF  +   GL P+  T+  LI+  CK GRV     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L    +PD +T+ +LI GLC +  + +A  L  ++   G KPD  TYTTLI+G C+
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            GH   A    + M   N       + D + Y+ +  GLC+EG    A+++  +M    +
Sbjct: 324 EGHLETAFEYRKRMIKEN------IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 377

Query: 195 NPDVVTYTSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVT 235
            P++ TYT +I  FC   D W  +K L  EM   G  P+VVT
Sbjct: 378 KPEIGTYTMIINEFCKKGDVWTGSK-LLKEMQRDGYAPSVVT 418



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 100/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +    + P VV++ +L+ G+    + +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTT 316



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 107/232 (46%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVCK------PDAITYSTITD 171
           +Y T+I+ LC       A  L + + +  G+      F  + +       D   +S +  
Sbjct: 15  SYCTMIHFLCTHQMIPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQISDIYVFSGLIT 74

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   K+        T   ++        +      + E ++ G   
Sbjct: 75  AYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPA 134

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+   K G++  A  + + + + G+RP    +NTLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLK 194

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  VT+ T
Sbjct: 195 NAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTT 246


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 169/333 (50%), Gaps = 6/333 (1%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   ++N+L   L +        +L   + S  + PD +TY+IL +   + G    
Sbjct: 79  HGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKA 138

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              + G+ L++  T    T + L+ GLC + ++  A  +   L   G  P    Y TLIN
Sbjct: 139 MLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLIN 198

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G C+TG    A + F +M + +       KPD ITY+ + +GLCK   +  A++L ++M+
Sbjct: 199 GYCQTGELEGAFSTFGQMKSRH------IKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           D  +NP V T+ +LI  +       +   +  EM + G++PNVV++  I+N  CKNGK+ 
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 312

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA  +L+ M    V P+A VYN ++D +   G  ++A  L   M+SNG    + +Y +LI
Sbjct: 313 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 372

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G C   +I  A  + + + +  + P  V+YNT
Sbjct: 373 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNT 405



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 170/337 (50%), Gaps = 6/337 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M R    PP   S+N++   + +       + +F  +    + P+  TYN +I+   K G
Sbjct: 5   MGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGG 64

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +  GF +  +++     P+A+T+  L+ GLC   R+ E +AL  ++ +    PD FTY+
Sbjct: 65  DLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYS 124

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            L +GL R G +   L+LF +        G        T S + +GLCK+G V  A+E+ 
Sbjct: 125 ILFDGLSRNGDSKAMLSLFGKYLKNGVTIG------DYTCSILLNGLCKDGKVSIAEEVL 178

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             + +  + P  V Y +LI G+C   +   A   F +M  + ++P+ +T+N ++N LCK 
Sbjct: 179 QSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKA 238

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            ++  A  LL  M   GV P    +NTL+D +  TG++ +   +   M+ NG   +V SY
Sbjct: 239 ERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSY 298

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G ++N +CKN +I  A+++  +M  K + P    YN 
Sbjct: 299 GSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNA 335



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 168/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ILF  L++N     +LSLF +    G+    YT +IL+N  CK G+VS    V
Sbjct: 118 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 177

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   P  V + +LI G C    +  A + F ++++   KPD  TY  LINGLC+
Sbjct: 178 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 237

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A +L  EM + NG       P   T++T+ D   + G ++K   +  +M++  +
Sbjct: 238 AERITNAQDLLMEMQD-NG-----VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 291

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV+Y S++  FC      EA  +  +M  + V PN   +N I++   ++G  D+A  
Sbjct: 292 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 351

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M   G+ P    YN L+ G C   +++ A+E+  S+ ++  + D  SY  LI+  C
Sbjct: 352 LVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACC 411

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               I+ AL L   M   GI+ TV TY+
Sbjct: 412 YRGNIDKALDLQQRMHKYGIKSTVRTYH 439



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 151/341 (44%), Gaps = 29/341 (8%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +IL   L K+        + + L + GL P    YN LIN +C+ G +   F   G++  
Sbjct: 159 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 218

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD +T+ +LI GLC   RI  A  L  +++  G  P V T+ TLI+   RTG    
Sbjct: 219 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 278

Query: 141 ALNLFEEMANGNGEFGVV---------CK--------------------PDAITYSTITD 171
              +  EM     +  VV         CK                    P+A  Y+ I D
Sbjct: 279 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 338

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + G  D+A  L  KMK   I+P +VTY  LI+G C  +  +EA+ +   + +  + P
Sbjct: 339 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 398

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           + V++N +++  C  G +D+A  L + M + G++     Y+ L+ G    GR+N  + L+
Sbjct: 399 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLY 458

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
             M  N  +     + I++  Y K      A  L  EML K
Sbjct: 459 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 499



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 6/183 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N +     ++   D    L +++ S G+ P + TYN+LI   C   ++S    +
Sbjct: 328 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 387

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PDAV++ +LI   C    I +A  L  ++  +G K  V TY  LI+GL  
Sbjct: 388 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 447

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L+++M   N    VV  P    ++ + +   K G   KA++L  +M  +  
Sbjct: 448 AGRLNEMEYLYQKMMQNN----VV--PSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRN 501

Query: 195 NPD 197
           N D
Sbjct: 502 NHD 504


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 176/328 (53%), Gaps = 8/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN+L   L K         L   +   G  P+  TYN L++  C  G++     +
Sbjct: 238 PNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSL 297

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++ +   P+ VTF +LI G   + R  +   +   L A G + + + Y++LI+GLC+
Sbjct: 298 LNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCK 357

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ L++EM  G G     C P+ I YS + DGLC+EG +D+A+    +MK++  
Sbjct: 358 EGKFNQAMELWKEMV-GKG-----CGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGY 411

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY+SL+RG+  A D ++A  ++ EM +     N V +++++N LCK+GK  EA  
Sbjct: 412 LPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALM 471

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG--CMRDVFSYGILING 312
           + + M+  G++ D   Y++++ GFC    V +  +LF  M   G     DV +Y IL+N 
Sbjct: 472 VWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNA 531

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +C  K I  A+ + + ML +G  P  +T
Sbjct: 532 FCIQKSIFRAIDILNIMLDQGCDPDFIT 559



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 186/380 (48%), Gaps = 46/380 (12%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL---NSIGLFPDLYTYNILI 59
           +F  M         V SFN +   + +   ++  L  +  +    S+ + P+  T+N++I
Sbjct: 118 LFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVI 177

Query: 60  NCFCKMGRVSPGFVVLGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
              C++G V     V   I LR+C  PD  T+++L+ GLC E RI EA +L  +++  G 
Sbjct: 178 KAMCRLGLVDKAIEVFREIPLRNC-APDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGT 236

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            P++  +  LI+ LC+ G    A  L + M      F   C P+ +TY+ +  GLC +G 
Sbjct: 237 FPNLVAFNVLISALCKKGDLGRAAKLVDNM------FLKGCVPNEVTYNALVHGLCLKGK 290

Query: 179 VDKAKELFLKMKDENINPDVVT-----------------------------------YTS 203
           ++KA  L  +M      P+ VT                                   Y+S
Sbjct: 291 LEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSS 350

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           LI G C    +N+A  L+ EM+ +G  PN + ++ +++ LC+ GK+DEA   L  M   G
Sbjct: 351 LISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKG 410

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
             P++  Y++LM G+   G  ++A  ++  M +N C+ +   Y ILING CK+ +   AL
Sbjct: 411 YLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEAL 470

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            ++ +MLS+GI+  VV Y++
Sbjct: 471 MVWKQMLSRGIKLDVVAYSS 490



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 134/297 (45%), Gaps = 52/297 (17%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           L + G   + Y Y+ LI+  CK G+ +    +   ++     P+ + +++LI GLC E +
Sbjct: 336 LEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGK 395

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC--- 159
           + EA    ++++  G  P+ FTY++L+ G    G +  A+ +++EMAN N     VC   
Sbjct: 396 LDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSI 455

Query: 160 --------------------------KPDAITYSTITDGLCKEGFVDKAKELFLKM--KD 191
                                     K D + YS++  G C    V++  +LF +M  + 
Sbjct: 456 LINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQG 515

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN----- 246
             + PDV+TY  L+  FC       A  +   M+DQG  P+ +T ++ +  L +N     
Sbjct: 516 PVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMNPPQ 575

Query: 247 -GK--MDE-------------ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
            G+  +DE             AS+++E+M+   + P AS +  ++   C    V +A
Sbjct: 576 DGREFLDELVVRLVKRQRTIGASKIIEVMMHKFLLPKASTWAMVVQQVCKPKNVRKA 632


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 172/328 (52%), Gaps = 2/328 (0%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN+L G L  + H +    LF ++ + G  P+ +T+ IL+  +C+ G  S G  +
Sbjct: 145 PEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLEL 204

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG++      P+ V + +LI   C E +  +A  L  K+R  G  P V T+ + I+ LC 
Sbjct: 205 LGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCG 264

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G  + A  +F +M   + E G+   P+ ITY  +  G CKEG +++AK L   MK    
Sbjct: 265 SGKILEASRIFRDM-QIDEELGLP-HPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNAN 322

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++ +Y   + G        EA  +  EM+  G++P++ ++N++M+ LCKNG + +A  
Sbjct: 323 FINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARM 382

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+ LMI+ G+ PD   Y+TL+ G+C  G+V  A  L   M SN C  + ++  +L++   
Sbjct: 383 LMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLW 442

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   I  A +L  +M  KG     VT N
Sbjct: 443 KEGRISEAENLLQKMNEKGYGVDTVTCN 470



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 181/346 (52%), Gaps = 29/346 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+NI    L +N        + K +  IG+ PD+Y+YNI+++  CK G +S   +++G +
Sbjct: 328 SYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLM 387

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +R+   PD VT+++L+ G C++ ++ EA  L  ++ +  C P+ +T   L++ L + G  
Sbjct: 388 IRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRI 447

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL------------- 185
             A NL ++M N  G +GV    D +T + I + LC  G +DKA E+             
Sbjct: 448 SEAENLLQKM-NEKG-YGV----DTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALG 501

Query: 186 -----FLKMKDENIN-----PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
                F+ + D+ I+     PD+VTY+++I G C A   ++AK  FIEMM +G+QP+   
Sbjct: 502 NLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAI 561

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           ++  ++  C+ GK+  A ++L+ M + G       YN+L+ G     ++     L   M 
Sbjct: 562 YDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMR 621

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             G   DV +Y  ++N  C+   I  A S+  EML KGI P + ++
Sbjct: 622 EKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSF 667



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 163/398 (40%), Gaps = 91/398 (22%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L L  ++ ++G+ P+   YN LI+ FCK G+      ++ ++      P   TF S I  
Sbjct: 202 LELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISA 261

Query: 97  LCAESRIMEAAALFTKLR---AFGC-KPDVFTYTTLINGLCRTGHTIVALNLFEEMANG- 151
           LC   +I+EA+ +F  ++     G   P+V TY  ++ G C+ G    A  L + M    
Sbjct: 262 LCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNA 321

Query: 152 -----------------NGEF-----------GVVCKPDAITYSTITDGLCKEGFVDKAK 183
                            NG+            G+  +PD  +Y+ + DGLCK G +  A+
Sbjct: 322 NFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDAR 381

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV---------- 233
            L   M    I PD VTY++L+ G+C      EA  L  EM+     PN           
Sbjct: 382 MLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSL 441

Query: 234 -------------------------VTFNVIMNELCKNGKMDEASRLLELMIQIGVR--- 265
                                    VT N+I+N LC NG++D+A  ++  M   G     
Sbjct: 442 WKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALG 501

Query: 266 --------------------PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
                               PD   Y+T++ G C  GR++ AK+ F+ M S G   D   
Sbjct: 502 NLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAI 561

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y   I+ +C+  +I  A  +  +M  +G   T+ TYN+
Sbjct: 562 YDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNS 599



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 156/344 (45%), Gaps = 30/344 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV------ 68
           P   + N+L   L K        +L +++N  G   D  T NI+IN  C  G++      
Sbjct: 429 PNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEI 488

Query: 69  -----SPGFVVLGRILRSCF------------TPDAVTFTSLIKGLCAESRIMEAAALFT 111
                + G   LG +  S              TPD VT++++I GLC   R+ +A   F 
Sbjct: 489 VNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFI 548

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
           ++ + G +PD   Y T I+  CR G    A  + ++M          C     TY+++  
Sbjct: 549 EMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRG------CNKTLQTYNSLIL 602

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           GL  +  + +   L  +M+++ ++PDV TY  ++   C     N+A  +  EM+ +G+ P
Sbjct: 603 GLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISP 662

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N+ +F +++   CK      +  + E+ + +    +A +Y  + +   + G+V  AKELF
Sbjct: 663 NISSFRILIKAFCKACDFKASHEVFEIALNVCGHKEA-LYTLMFNELLVGGKVAEAKELF 721

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            +          F Y  LI+  CK++++E A  +   ++ KG +
Sbjct: 722 ETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQ 765



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 114/277 (41%), Gaps = 28/277 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ +   L K    D     F  + S GL PD   Y+  I+ FC+ G++S  F V
Sbjct: 522 PDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQV 581

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +        T+ SLI GL ++++I E   L  ++R  G  PDV TY  ++N LC 
Sbjct: 582 LKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCE 641

Query: 135 TGHTIVALNLFEEMANGN-----GEFGV-----------------------VCKPDAITY 166
            G    A ++ +EM           F +                       VC      Y
Sbjct: 642 GGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACDFKASHEVFEIALNVCGHKEALY 701

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + + + L   G V +AKELF    D + +     Y  LI   C       A  +   ++D
Sbjct: 702 TLMFNELLVGGKVAEAKELFETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLID 761

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           +G Q +  +F  +++   K G    A  L E M+++ 
Sbjct: 762 KGYQFDPASFMPVIDGFGKMGNKHVADELAERMMEMA 798



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 2/173 (1%)

Query: 173 LCKEGFVDKAKELFLKMKDE--NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           L K GF +KA   F  ++       P +  Y  L++     N       L+ +M+   V 
Sbjct: 85  LAKSGFFNKAISHFKSLRSNFPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVS 144

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P   TFN+++  LC +G +++A  L + M   G  P+   +  L+ G+C  G  ++  EL
Sbjct: 145 PEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLEL 204

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M + G + +   Y  LI+ +CK  +   A  L  +M   G+ P V T+N+
Sbjct: 205 LGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNS 257



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 91/186 (48%), Gaps = 4/186 (2%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           +P    Y+ +     +E  V+    L+  M    ++P+  T+  LI   C +    +A+ 
Sbjct: 109 QPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARE 168

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           LF +M  +G +PN  TF +++   C+ G   +   LL  M  +G+ P+  +YNTL+  FC
Sbjct: 169 LFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFC 228

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML---SKGI-R 335
             G+ + A++L   M  +G +  V ++   I+  C + +I  A  ++ +M      G+  
Sbjct: 229 KEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPH 288

Query: 336 PTVVTY 341
           P V+TY
Sbjct: 289 PNVITY 294


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 183/369 (49%), Gaps = 33/369 (8%)

Query: 7   MLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           M +M  S   P + ++N +     K   +   + L   + S G+  D+ TYN+LI+  C+
Sbjct: 256 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 315

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
             R++ G+++L  + +    P+ VT+ +LI G   E +++ A+ L  ++ +FG  P+  T
Sbjct: 316 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 375

Query: 125 YTTLINGLCRTGHTIVALNLFEEM-ANG-----------------NGEFGV--------- 157
           +  LI+G    G+   AL +F  M A G                 N EF +         
Sbjct: 376 FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMK 435

Query: 158 ---VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
              VC    ITY+ + DGLCK GF+D+A  L  +M  + I+PD+VTY++LI GFC    +
Sbjct: 436 RNGVC-VGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRF 494

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             AK +   +   G+ PN + ++ ++   C+ G + EA R+ E MI  G   D   +N L
Sbjct: 495 KTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVL 554

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +   C  G+V  A+E    M S+G + +  S+  LINGY  + E   A S++ EM   G 
Sbjct: 555 VTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGH 614

Query: 335 RPTVVTYNT 343
            PT  TY +
Sbjct: 615 HPTFFTYGS 623



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 161/357 (45%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FNIL   L     ++    L +++   G  P + TYN +++ +CK GR      +
Sbjct: 231 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 290

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +       D  T+  LI  LC  +RI +   L   +R     P+  TY TLING   
Sbjct: 291 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 350

Query: 135 TGHTIVALNLFEEMAN------------------GNGEFGVVCK-----------PDAIT 165
            G  ++A  L  EM +                    G F    K           P  ++
Sbjct: 351 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 410

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y  + DGLCK    D A+  +++MK   +    +TYT +I G C     +EA  L  EM 
Sbjct: 411 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 470

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G+ P++VT++ ++N  CK G+   A  ++  + ++G+ P+  +Y+TL+   C  G + 
Sbjct: 471 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 530

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A  ++ +M   G  RD F++ +L+   CK  ++  A      M S GI P  V+++
Sbjct: 531 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFD 587



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 157/335 (46%), Gaps = 8/335 (2%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R+  S P V  ++IL     +       L +F+ +   G  P +YT N ++    K G  
Sbjct: 157 RLCNSNPSV--YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGED 214

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
              +  L  +L+    PD  TF  LI  LCAE    +++ L  K+   G  P + TY T+
Sbjct: 215 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTV 274

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           ++  C+ G    A+ L + M +     GV    D  TY+ +   LC+   + K   L   
Sbjct: 275 LHWYCKKGRFKAAIELLDHMKSK----GV--DADVCTYNMLIHDLCRSNRIAKGYLLLRD 328

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M+   I+P+ VTY +LI GF        A  L  EM+  G+ PN VTFN +++     G 
Sbjct: 329 MRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGN 388

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
             EA ++  +M   G+ P    Y  L+DG C     + A+  ++ M+ NG      +Y  
Sbjct: 389 FKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTG 448

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +I+G CKN  ++ A+ L +EM   GI P +VTY+ 
Sbjct: 449 MIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 483



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N + G + K+    +V S  K +    + PD+ T+NILIN  C  G       +
Sbjct: 196 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYL 255

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++ +S + P  VT+ +++   C + R   A  L   +++ G   DV TY  LI+ LCR
Sbjct: 256 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 315

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +        L  +M         +  P+ +TY+T+ +G   EG V  A +L  +M    +
Sbjct: 316 SNRIAKGYLLLRDMRKR------MIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGL 369

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ VT+ +LI G     ++ EA  +F  M  +G+ P+ V++ V+++ LCKN + D A  
Sbjct: 370 SPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARG 429

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M + GV      Y  ++DG C  G ++ A  L   M  +G   D+ +Y  LING+C
Sbjct: 430 FYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFC 489

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K    + A  +   +   G+ P  + Y+T
Sbjct: 490 KVGRFKTAKEIVCRIYRVGLSPNGIIYST 518



 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 9/338 (2%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           YM+      P   S+ +L   L KN  +D     + R+   G+     TY  +I+  CK 
Sbjct: 397 YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKN 456

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G +    V+L  + +    PD VT+++LI G C   R   A  +  ++   G  P+   Y
Sbjct: 457 GFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIY 516

Query: 126 TTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           +TLI   CR G    A+ ++E M   G+         D  T++ +   LCK G V +A+E
Sbjct: 517 STLIYNCCRMGCLKEAIRIYEAMILEGHTR-------DHFTFNVLVTSLCKAGKVAEAEE 569

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
               M  + I P+ V++  LI G+  + +  +A  +F EM   G  P   T+  ++  LC
Sbjct: 570 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 629

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K G + EA + L+ +  +    D  +YNTL+   C +G + +A  LF  M     + D +
Sbjct: 630 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 689

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKG-IRPTVVTY 341
           +Y  LI+G C+  +   A+    E  ++G + P  V Y
Sbjct: 690 TYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMY 727



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 159/343 (46%), Gaps = 11/343 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + ML    SP  V +FN L        ++   L +F  + + GL P   +Y +L++  
Sbjct: 360 LLNEMLSFGLSPNHV-TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 418

Query: 63  CKMGR--VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CK     ++ GF +  R+ R+      +T+T +I GLC    + EA  L  ++   G  P
Sbjct: 419 CKNAEFDLARGFYM--RMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDP 476

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+ TY+ LING C+ G    A  +   +      + V   P+ I YST+    C+ G + 
Sbjct: 477 DIVTYSALINGFCKVGRFKTAKEIVCRI------YRVGLSPNGIIYSTLIYNCCRMGCLK 530

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  ++  M  E    D  T+  L+   C A    EA+     M   G+ PN V+F+ ++
Sbjct: 531 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 590

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N    +G+  +A  + + M ++G  P    Y +L+ G C  G +  A++   S+ +    
Sbjct: 591 NGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAA 650

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D   Y  L+   CK+  +  A+SL+ EM+ + I P   TY +
Sbjct: 651 VDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTS 693



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 154/327 (47%), Gaps = 11/327 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FN+L   L K           + + S G+ P+  +++ LIN +   G     F V   +
Sbjct: 550 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 609

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +    P   T+ SL+KGLC    + EA      L A     D   Y TL+  +C++G+ 
Sbjct: 610 TKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNL 669

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE--NINP 196
             A++LF EM   +        PD+ TY+++  GLC++G    A  LF K  +   N+ P
Sbjct: 670 AKAVSLFGEMVQRS------ILPDSYTYTSLISGLCRKGKTVIAI-LFAKEAEARGNVLP 722

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRL 255
           + V YT  + G   A  W +A   F E MD  G  P++VT N +++   + GK+++ + L
Sbjct: 723 NKVMYTCFVDGMFKAGQW-KAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDL 781

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           L  M      P+ + YN L+ G+     V+ +  L+ S+  NG + D  +   L+ G C+
Sbjct: 782 LPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICE 841

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +  +E  L +    + +G+     T+N
Sbjct: 842 SNMLEIGLKILKAFICRGVEVDRYTFN 868



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 159/342 (46%), Gaps = 8/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M ++    P   ++  L   L K  H        K L+++    D   YN L+ 
Sbjct: 603 FSVFDEMTKV-GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLT 661

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CK 119
             CK G ++    + G +++    PD+ T+TSLI GLC + + + A     +  A G   
Sbjct: 662 AMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVL 721

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+   YT  ++G+ + G     +   E+M N      +   PD +T + + DG  + G +
Sbjct: 722 PNKVMYTCFVDGMFKAGQWKAGIYFREQMDN------LGHTPDIVTTNAMIDGYSRMGKI 775

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +K  +L  +M ++N  P++ TY  L+ G+    D + +  L+  ++  G+ P+ +T + +
Sbjct: 776 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 835

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  +C++  ++   ++L+  I  GV  D   +N L+   C  G +N A +L   M S G 
Sbjct: 836 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGI 895

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             D  +   +++   +N   + +  +  EM  +GI P    Y
Sbjct: 896 SLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 937



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 141/297 (47%), Gaps = 12/297 (4%)

Query: 50   PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
            P+L TYNIL++ + K   VS  F++   I+ +   PD +T  SL+ G+C ES ++E    
Sbjct: 792  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC-ESNMLEIG-- 848

Query: 110  FTKLRAFGCKP---DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
               L+AF C+    D +T+  LI+  C  G    A +L + M +     G+    D  T 
Sbjct: 849  LKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS----LGISLDKD--TC 902

Query: 167  STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
              +   L +     +++ +  +M  + I+P+   Y  LI G C   D   A  +  EM+ 
Sbjct: 903  DAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIA 962

Query: 227  QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
              + P  V  + ++  L K GK DEA+ LL  M+++ + P  + + TLM   C  G V  
Sbjct: 963  HKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIE 1022

Query: 287  AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A EL V M + G   D+ SY +LI G C   ++  A  LY EM   G      TY  
Sbjct: 1023 ALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKA 1079



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 139/276 (50%), Gaps = 7/276 (2%)

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G+ S  F  L    R C +  +V +  LI+    E  I ++  +F  +  +G  P V+T 
Sbjct: 143 GKSSFVFGALMTTYRLCNSNPSV-YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTC 201

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
             ++  + ++G  +   +  +EM         +C PD  T++ + + LC EG  +K+  L
Sbjct: 202 NAILGSVVKSGEDVSVWSFLKEMLKRK-----IC-PDVATFNILINVLCAEGSFEKSSYL 255

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             KM+     P +VTY +++  +C    +  A  L   M  +GV  +V T+N+++++LC+
Sbjct: 256 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 315

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           + ++ +   LL  M +  + P+   YNTL++GF   G+V  A +L   M S G   +  +
Sbjct: 316 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 375

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  LI+G+      + AL ++  M +KG+ P+ V+Y
Sbjct: 376 FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 411



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 17/233 (7%)

Query: 128 LINGLCRTGHTIV-------ALNLFEEMANGNGE----FGVV------CKPDAITYSTIT 170
           ++  +C T H +V       A ++ +E++  +G+    FG +      C  +   Y  + 
Sbjct: 111 IVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILI 170

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
               +EG +  + E+F  M     NP V T  +++     + +         EM+ + + 
Sbjct: 171 RVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKIC 230

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+V TFN+++N LC  G  +++S L++ M + G  P    YNT++  +C  GR   A EL
Sbjct: 231 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 290

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M+S G   DV +Y +LI+  C++  I     L  +M  + I P  VTYNT
Sbjct: 291 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNT 343



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 100/237 (42%), Gaps = 8/237 (3%)

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
            AL T  R     P V  Y  LI    R G    +L +F  M    G +G    P   T 
Sbjct: 150 GALMTTYRLCNSNPSV--YDILIRVYLREGMIQDSLEIFRLM----GLYGF--NPSVYTC 201

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + I   + K G          +M    I PDV T+  LI   C    + ++  L  +M  
Sbjct: 202 NAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEK 261

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G  P +VT+N +++  CK G+   A  LL+ M   GV  D   YN L+   C + R+ +
Sbjct: 262 SGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAK 321

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L   M       +  +Y  LING+    ++  A  L +EMLS G+ P  VT+N 
Sbjct: 322 GYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNA 378



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 11   HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
            H   PP  + + +   LAK    D    L + +  + L P + ++  L++  CK G V  
Sbjct: 963  HKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIE 1022

Query: 71   GFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
              + L  ++ +C    D V++  LI GLCA+  +  A  L+ +++  G   +  TY  LI
Sbjct: 1023 A-LELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALI 1081

Query: 130  NGL 132
             GL
Sbjct: 1082 RGL 1084


>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
 gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
          Length = 484

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 172/334 (51%), Gaps = 16/334 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + SF I+  C    ++          + S+G+ PD+  YN+++  +C +GRV    + 
Sbjct: 77  PSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIK 136

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G++ ++C  P+  T+ ++I GLC   +I  A  LFT+L      PD FTY+TL++GLC+
Sbjct: 137 FGKMGKTC-KPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQ 195

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +++ M   N +       DA  Y+ + DG CKE  VD+A E+   M     
Sbjct: 196 AERLEAAIKVYDMMLEANYD------GDAGAYNAMADGFCKERRVDEALEVLKTMIQRRC 249

Query: 195 NPDVVTYTSLIRGFC-YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            P VVTY  +I G C Y N   EA  LF +M+     PN VT+  ++  L    K+ E  
Sbjct: 250 KPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGL---SKIYEVQ 306

Query: 254 RLLEL---MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           R LEL   M + G+ PD   Y++L+  F    +++ AK +      N    DV+ Y  LI
Sbjct: 307 RCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLI 366

Query: 311 NGYCKNKE--IEGALSLYSEMLSKGIRPTVVTYN 342
           +GYC+ ++  ++ AL L+  M  + + P V+TYN
Sbjct: 367 SGYCRARKPRVDEALLLFQNMKDRRVWPNVITYN 400



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 163/341 (47%), Gaps = 8/341 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD+  +       V  +  L   L + +     +  FKR       P LY++ I+I CFC
Sbjct: 31  FDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFC 90

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +      +  LG +      PD   +  ++KG C   R+  A   F K+    CKP+V 
Sbjct: 91  NVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKM-GKTCKPNVA 149

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY T+INGLC+ G    A++LF  + +       +  PD  TYST+  GLC+   ++ A 
Sbjct: 150 TYNTVINGLCKFGKIDWAVHLFTRLPHD------LVDPDGFTYSTLVHGLCQAERLEAAI 203

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +++  M + N + D   Y ++  GFC     +EA  +   M+ +  +P+VVT+N I+N +
Sbjct: 204 KVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVTYNCIINGV 263

Query: 244 CK-NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           C+   +++EA RL + M+     P+A  Y T++ G      V R  ELF  M   G   D
Sbjct: 264 CQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPD 323

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++Y  LI  + K ++++ A S+  +     + P V  Y T
Sbjct: 324 GYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTT 364



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 9/322 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K    D  + LF RL    + PD +TY+ L++  C+  R+     V
Sbjct: 146 PNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKV 205

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L + +  DA  + ++  G C E R+ EA  +   +    CKP V TY  +ING+C+
Sbjct: 206 YDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVTYNCIINGVCQ 265

Query: 135 TGHTI-VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             + I  A  LF++M       G  C P+A+TY T+  GL K   V +  ELF  M    
Sbjct: 266 YKNRIEEAYRLFQQMV------GSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAG 319

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK--MDE 251
           ++PD   Y SLI  F      +EAK +  +     V P+V  +  +++  C+  K  +DE
Sbjct: 320 LSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDE 379

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  L + M    V P+   YN ++ G C TGR + A ++F  M    C  +  ++ ++  
Sbjct: 380 ALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTM 439

Query: 312 GYCKNKEIEGALSLYSEMLSKG 333
           G    ++ +    ++ +M+ KG
Sbjct: 440 GMIHCRKTDKFERIFMDMVYKG 461



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 8/178 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++  +   L+K       L LFK ++  GL PD Y Y+ LI  F K+ ++     
Sbjct: 286 PPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKS 345

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLC--AESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           +L    R+   PD   +T+LI G C   + R+ EA  LF  ++     P+V TY  ++ G
Sbjct: 346 ILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRG 405

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           LC+TG    A  +F+EM      F V C P+ +T+  +T G+      DK + +F+ M
Sbjct: 406 LCKTGRFDEAYQIFQEM------FKVKCSPNRMTFKVMTMGMIHCRKTDKFERIFMDM 457


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 183/369 (49%), Gaps = 33/369 (8%)

Query: 7   MLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           M +M  S   P + ++N +     K   +   + L   + S G+  D+ TYN+LI+  C+
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
             R++ G+++L  + +    P+ VT+ +LI G   E +++ A+ L  ++ +FG  P+  T
Sbjct: 276 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 335

Query: 125 YTTLINGLCRTGHTIVALNLFEEM-ANG-----------------NGEFGV--------- 157
           +  LI+G    G+   AL +F  M A G                 N EF +         
Sbjct: 336 FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMK 395

Query: 158 ---VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
              VC    ITY+ + DGLCK GF+D+A  L  +M  + I+PD+VTY++LI GFC    +
Sbjct: 396 RNGVC-VGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRF 454

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             AK +   +   G+ PN + ++ ++   C+ G + EA R+ E MI  G   D   +N L
Sbjct: 455 KTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVL 514

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +   C  G+V  A+E    M S+G + +  S+  LINGY  + E   A S++ EM   G 
Sbjct: 515 VTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGH 574

Query: 335 RPTVVTYNT 343
            PT  TY +
Sbjct: 575 HPTFFTYGS 583



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 161/357 (45%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FNIL   L     ++    L +++   G  P + TYN +++ +CK GR      +
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +       D  T+  LI  LC  +RI +   L   +R     P+  TY TLING   
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310

Query: 135 TGHTIVALNLFEEMAN------------------GNGEFGVVCK-----------PDAIT 165
            G  ++A  L  EM +                    G F    K           P  ++
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y  + DGLCK    D A+  +++MK   +    +TYT +I G C     +EA  L  EM 
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G+ P++VT++ ++N  CK G+   A  ++  + ++G+ P+  +Y+TL+   C  G + 
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A  ++ +M   G  RD F++ +L+   CK  ++  A      M S GI P  V+++
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFD 547



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 157/335 (46%), Gaps = 8/335 (2%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R+  S P V  ++IL     +       L +F+ +   G  P +YT N ++    K G  
Sbjct: 117 RLCNSNPSV--YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGED 174

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
              +  L  +L+    PD  TF  LI  LCAE    +++ L  K+   G  P + TY T+
Sbjct: 175 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTV 234

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           ++  C+ G    A+ L + M +     GV    D  TY+ +   LC+   + K   L   
Sbjct: 235 LHWYCKKGRFKAAIELLDHMKSK----GV--DADVCTYNMLIHDLCRSNRIAKGYLLLRD 288

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M+   I+P+ VTY +LI GF        A  L  EM+  G+ PN VTFN +++     G 
Sbjct: 289 MRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGN 348

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
             EA ++  +M   G+ P    Y  L+DG C     + A+  ++ M+ NG      +Y  
Sbjct: 349 FKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTG 408

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +I+G CKN  ++ A+ L +EM   GI P +VTY+ 
Sbjct: 409 MIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 443



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N + G + K+    +V S  K +    + PD+ T+NILIN  C  G       +
Sbjct: 156 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYL 215

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++ +S + P  VT+ +++   C + R   A  L   +++ G   DV TY  LI+ LCR
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +        L  +M         +  P+ +TY+T+ +G   EG V  A +L  +M    +
Sbjct: 276 SNRIAKGYLLLRDMRKR------MIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGL 329

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ VT+ +LI G     ++ EA  +F  M  +G+ P+ V++ V+++ LCKN + D A  
Sbjct: 330 SPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARG 389

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M + GV      Y  ++DG C  G ++ A  L   M  +G   D+ +Y  LING+C
Sbjct: 390 FYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFC 449

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K    + A  +   +   G+ P  + Y+T
Sbjct: 450 KVGRFKTAKEIVCRIYRVGLSPNGIIYST 478



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 9/338 (2%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           YM+      P   S+ +L   L KN  +D     + R+   G+     TY  +I+  CK 
Sbjct: 357 YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKN 416

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G +    V+L  + +    PD VT+++LI G C   R   A  +  ++   G  P+   Y
Sbjct: 417 GFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIY 476

Query: 126 TTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           +TLI   CR G    A+ ++E M   G+         D  T++ +   LCK G V +A+E
Sbjct: 477 STLIYNCCRMGCLKEAIRIYEAMILEGHTR-------DHFTFNVLVTSLCKAGKVAEAEE 529

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
               M  + I P+ V++  LI G+  + +  +A  +F EM   G  P   T+  ++  LC
Sbjct: 530 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 589

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K G + EA + L+ +  +    D  +YNTL+   C +G + +A  LF  M     + D +
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKG-IRPTVVTY 341
           +Y  LI+G C+  +   A+    E  ++G + P  V Y
Sbjct: 650 TYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMY 687



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 159/343 (46%), Gaps = 11/343 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + ML    SP  V +FN L        ++   L +F  + + GL P   +Y +L++  
Sbjct: 320 LLNEMLSFGLSPNHV-TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378

Query: 63  CKMGR--VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CK     ++ GF +  R+ R+      +T+T +I GLC    + EA  L  ++   G  P
Sbjct: 379 CKNAEFDLARGFYM--RMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDP 436

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+ TY+ LING C+ G    A  +   +      + V   P+ I YST+    C+ G + 
Sbjct: 437 DIVTYSALINGFCKVGRFKTAKEIVCRI------YRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  ++  M  E    D  T+  L+   C A    EA+     M   G+ PN V+F+ ++
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N    +G+  +A  + + M ++G  P    Y +L+ G C  G +  A++   S+ +    
Sbjct: 551 NGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAA 610

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D   Y  L+   CK+  +  A+SL+ EM+ + I P   TY +
Sbjct: 611 VDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTS 653



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 154/327 (47%), Gaps = 11/327 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FN+L   L K           + + S G+ P+  +++ LIN +   G     F V   +
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 569

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +    P   T+ SL+KGLC    + EA      L A     D   Y TL+  +C++G+ 
Sbjct: 570 TKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNL 629

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE--NINP 196
             A++LF EM   +        PD+ TY+++  GLC++G    A  LF K  +   N+ P
Sbjct: 630 AKAVSLFGEMVQRS------ILPDSYTYTSLISGLCRKGKTVIAI-LFAKEAEARGNVLP 682

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRL 255
           + V YT  + G   A  W +A   F E MD  G  P++VT N +++   + GK+++ + L
Sbjct: 683 NKVMYTCFVDGMFKAGQW-KAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDL 741

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           L  M      P+ + YN L+ G+     V+ +  L+ S+  NG + D  +   L+ G C+
Sbjct: 742 LPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICE 801

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +  +E  L +    + +G+     T+N
Sbjct: 802 SNMLEIGLKILKAFICRGVEVDRYTFN 828



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 159/342 (46%), Gaps = 8/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M ++    P   ++  L   L K  H        K L+++    D   YN L+ 
Sbjct: 563 FSVFDEMTKV-GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLT 621

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CK 119
             CK G ++    + G +++    PD+ T+TSLI GLC + + + A     +  A G   
Sbjct: 622 AMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVL 681

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+   YT  ++G+ + G     +   E+M N      +   PD +T + + DG  + G +
Sbjct: 682 PNKVMYTCFVDGMFKAGQWKAGIYFREQMDN------LGHTPDIVTTNAMIDGYSRMGKI 735

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +K  +L  +M ++N  P++ TY  L+ G+    D + +  L+  ++  G+ P+ +T + +
Sbjct: 736 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 795

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  +C++  ++   ++L+  I  GV  D   +N L+   C  G +N A +L   M S G 
Sbjct: 796 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGI 855

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             D  +   +++   +N   + +  +  EM  +GI P    Y
Sbjct: 856 SLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 897



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 141/297 (47%), Gaps = 12/297 (4%)

Query: 50   PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
            P+L TYNIL++ + K   VS  F++   I+ +   PD +T  SL+ G+C ES ++E    
Sbjct: 752  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC-ESNMLEIG-- 808

Query: 110  FTKLRAFGCKP---DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
               L+AF C+    D +T+  LI+  C  G    A +L + M +     G+    D  T 
Sbjct: 809  LKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS----LGISLDKD--TC 862

Query: 167  STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
              +   L +     +++ +  +M  + I+P+   Y  LI G C   D   A  +  EM+ 
Sbjct: 863  DAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIA 922

Query: 227  QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
              + P  V  + ++  L K GK DEA+ LL  M+++ + P  + + TLM   C  G V  
Sbjct: 923  HKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIE 982

Query: 287  AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A EL V M + G   D+ SY +LI G C   ++  A  LY EM   G      TY  
Sbjct: 983  ALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKA 1039



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 139/276 (50%), Gaps = 7/276 (2%)

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G+ S  F  L    R C +  +V +  LI+    E  I ++  +F  +  +G  P V+T 
Sbjct: 103 GKSSFVFGALMTTYRLCNSNPSV-YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTC 161

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
             ++  + ++G  +   +  +EM         +C PD  T++ + + LC EG  +K+  L
Sbjct: 162 NAILGSVVKSGEDVSVWSFLKEMLKRK-----IC-PDVATFNILINVLCAEGSFEKSSYL 215

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             KM+     P +VTY +++  +C    +  A  L   M  +GV  +V T+N+++++LC+
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           + ++ +   LL  M +  + P+   YNTL++GF   G+V  A +L   M S G   +  +
Sbjct: 276 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 335

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  LI+G+      + AL ++  M +KG+ P+ V+Y
Sbjct: 336 FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 371



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 17/233 (7%)

Query: 128 LINGLCRTGHTIV-------ALNLFEEMANGNGE----FGVV------CKPDAITYSTIT 170
           ++  +C T H +V       A ++ +E++  +G+    FG +      C  +   Y  + 
Sbjct: 71  IVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILI 130

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
               +EG +  + E+F  M     NP V T  +++     + +         EM+ + + 
Sbjct: 131 RVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKIC 190

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+V TFN+++N LC  G  +++S L++ M + G  P    YNT++  +C  GR   A EL
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M+S G   DV +Y +LI+  C++  I     L  +M  + I P  VTYNT
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNT 303



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 100/237 (42%), Gaps = 8/237 (3%)

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
            AL T  R     P V  Y  LI    R G    +L +F  M    G +G    P   T 
Sbjct: 110 GALMTTYRLCNSNPSV--YDILIRVYLREGMIQDSLEIFRLM----GLYGF--NPSVYTC 161

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + I   + K G          +M    I PDV T+  LI   C    + ++  L  +M  
Sbjct: 162 NAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEK 221

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G  P +VT+N +++  CK G+   A  LL+ M   GV  D   YN L+   C + R+ +
Sbjct: 222 SGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAK 281

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L   M       +  +Y  LING+    ++  A  L +EMLS G+ P  VT+N 
Sbjct: 282 GYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNA 338



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 11   HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
            H   PP  + + +   LAK    D    L + +  + L P + ++  L++  CK G V  
Sbjct: 923  HKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIE 982

Query: 71   GFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
              + L  ++ +C    D V++  LI GLCA+  +  A  L+ +++  G   +  TY  LI
Sbjct: 983  A-LELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALI 1041

Query: 130  NGL 132
             GL
Sbjct: 1042 RGL 1044


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 181/372 (48%), Gaps = 33/372 (8%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F   LR   SP  + +FN +   L +         + K + + GL P + TYN LI+ +C
Sbjct: 179 FRSALRRRVSPD-IYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYC 237

Query: 64  KMGRVSPGFVV---LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           K G     + V   L  ++ +  +P AVTF  LI G C  S    A  +F +++  G   
Sbjct: 238 KKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAA 297

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMAN-----GNGEFGVVCK--------------- 160
            V TY +LI+GLC  G     + L EEM +         FG V K               
Sbjct: 298 SVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWI 357

Query: 161 ---------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    PD + Y+ + DG  + G ++ A  +   M  + I+P+V TY  LI GF  +
Sbjct: 358 DGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRS 417

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            DW  A  L  EM ++G++ +VVT+NV++  LC  G++ +A +LL+ M ++G+ P+   Y
Sbjct: 418 GDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTY 477

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           NT++ GFC  G +  A E+   ME      +V +Y + I  +C+  +++ A  L +EML 
Sbjct: 478 NTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLD 537

Query: 332 KGIRPTVVTYNT 343
           K + P  +TY T
Sbjct: 538 KCLVPNGITYET 549



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 169/343 (49%), Gaps = 22/343 (6%)

Query: 11  HPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           HP   P   S N L   L   K  D     F+      + PD+YT+N +I+  C++G++ 
Sbjct: 149 HPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLR 208

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAE---SRIMEAAALFTKLRAFGCKPDVFTYT 126
               V   I      P   T+ SLI G C +     +     L  ++   G  P   T+ 
Sbjct: 209 KAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFG 268

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LING C+  +T  A+ +FEEM     + G+      +TY+++  GLC EG V++  +L 
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMK----QQGIAA--SVVTYNSLISGLCSEGKVEEGVKLM 322

Query: 187 LKMKDENINPDVVTYTSLIRGFCY------ANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            +M+D  ++P+ +T+  +++GFC       ANDW +       M ++ V+P+VV + +++
Sbjct: 323 EEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDG------MTERNVEPDVVIYTILI 376

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   + GKM++A  + E M + G+ P+ + YN L+ GF  +G    A  L   M+  G  
Sbjct: 377 DGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIE 436

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            DV +Y +LI   C   E+  A+ L  EM   G+ P  +TYNT
Sbjct: 437 ADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 130/266 (48%), Gaps = 6/266 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N L   L      +  + L + +  +GL P+  T+  ++  FCK G ++     + 
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWID 358

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      PD V +T LI G     ++ +A A+   +   G  P+V TY  LI G  R+G
Sbjct: 359 GMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSG 418

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A  L +EM     E G+  + D +TY+ +   LC +G V KA +L  +M +  + P
Sbjct: 419 DWRSASGLLDEMK----EKGI--EADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEP 472

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + +TY ++I+GFC   +   A  +   M     + NVVT+NV +   C+ GKMDEA+ LL
Sbjct: 473 NHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLL 532

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTG 282
             M+   + P+   Y T+ +G    G
Sbjct: 533 NEMLDKCLVPNGITYETIKEGMMEKG 558



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 6/179 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L    +++  + +   L   +   G+  D+ TYN+LI   C  G V     +
Sbjct: 402 PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKL 461

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ +T+ ++I+G C +  I  A  + T++     + +V TY   I   C+
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQ 521

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G    A +L  EM +          P+ ITY TI +G+ ++G+    +   +    EN
Sbjct: 522 IGKMDEANDLLNEMLDK------CLVPNGITYETIKEGMMEKGYTPDIRGCTVSQASEN 574


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 174/343 (50%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D M+  H   P   ++N+L   L +        +L   + S  + PD +TY+IL +
Sbjct: 118 FRLRDQMV-CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 176

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              + G       + G+ L++  T    T + L+ GLC + ++  A  +   L   G  P
Sbjct: 177 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 236

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               Y TLING C+TG    A + F +M + +       KPD ITY+ + +GLCK   + 
Sbjct: 237 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRH------IKPDHITYNALINGLCKAERIT 290

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A++L ++M+D  +NP V T+ +LI  +       +   +  EM + G++PNVV++  I+
Sbjct: 291 NAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIV 350

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N  CKNGK+ EA  +L+ M    V P+A VYN ++D +   G  ++A  L   M+SNG  
Sbjct: 351 NAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGIS 410

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             + +Y +LI G C   +I  A  + + + +  + P  V+YNT
Sbjct: 411 PSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNT 453



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 174/338 (51%), Gaps = 8/338 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M R    PP   S+N++   + +       + +F  +    + P+  TYN +I+   K G
Sbjct: 53  MGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGG 112

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +  GF +  +++     P+A+T+  L+ GLC   R+ E +AL  ++ +    PD FTY+
Sbjct: 113 DLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYS 172

Query: 127 TLINGLCRTGHTIVALNLFEE-MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            L +GL R G +   L+LF + + NG      V   D  T S + +GLCK+G V  A+E+
Sbjct: 173 ILFDGLSRNGDSKAMLSLFGKYLKNG------VTIGD-YTCSILLNGLCKDGKVSIAEEV 225

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
              + +  + P  V Y +LI G+C   +   A   F +M  + ++P+ +T+N ++N LCK
Sbjct: 226 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 285

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
             ++  A  LL  M   GV P    +NTL+D +  TG++ +   +   M+ NG   +V S
Sbjct: 286 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 345

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           YG ++N +CKN +I  A+++  +M  K + P    YN 
Sbjct: 346 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNA 383



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 168/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ILF  L++N     +LSLF +    G+    YT +IL+N  CK G+VS    V
Sbjct: 166 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 225

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   P  V + +LI G C    +  A + F ++++   KPD  TY  LINGLC+
Sbjct: 226 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 285

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A +L  EM + NG       P   T++T+ D   + G ++K   +  +M++  +
Sbjct: 286 AERITNAQDLLMEMQD-NG-----VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 339

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV+Y S++  FC      EA  +  +M  + V PN   +N I++   ++G  D+A  
Sbjct: 340 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 399

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M   G+ P    YN L+ G C   +++ A+E+  S+ ++  + D  SY  LI+  C
Sbjct: 400 LVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACC 459

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               I+ AL L   M   GI+ TV TY+
Sbjct: 460 YRGNIDKALDLQQRMHKYGIKSTVRTYH 487



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 151/341 (44%), Gaps = 29/341 (8%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +IL   L K+        + + L + GL P    YN LIN +C+ G +   F   G++  
Sbjct: 207 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 266

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD +T+ +LI GLC   RI  A  L  +++  G  P V T+ TLI+   RTG    
Sbjct: 267 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 326

Query: 141 ALNLFEEMANGNGEFGVV---------CK--------------------PDAITYSTITD 171
              +  EM     +  VV         CK                    P+A  Y+ I D
Sbjct: 327 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 386

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + G  D+A  L  KMK   I+P +VTY  LI+G C  +  +EA+ +   + +  + P
Sbjct: 387 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 446

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           + V++N +++  C  G +D+A  L + M + G++     Y+ L+ G    GR+N  + L+
Sbjct: 447 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLY 506

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
             M  N  +     + I++  Y K      A  L  EML K
Sbjct: 507 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 547



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 137/284 (48%), Gaps = 7/284 (2%)

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
               +GR +      G +  +   PD   +   ++   A   + EA  +  ++   G  P
Sbjct: 1   ALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPP 60

Query: 121 -DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
            + F+Y  +I G+ R G    A+ +F+EM     E  V+  P+ ITY+T+ DG  K G +
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMT----ERAVL--PNHITYNTMIDGHIKGGDL 114

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +    L  +M    + P+ +TY  L+ G C A    E   L  EM  Q + P+  T++++
Sbjct: 115 EAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSIL 174

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
            + L +NG       L    ++ GV       + L++G C  G+V+ A+E+  S+ + G 
Sbjct: 175 FDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGL 234

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +     Y  LINGYC+  E+EGA S + +M S+ I+P  +TYN 
Sbjct: 235 VPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNA 278



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 6/183 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N +     ++   D    L +++ S G+ P + TYN+LI   C   ++S    +
Sbjct: 376 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 435

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PDAV++ +LI   C    I +A  L  ++  +G K  V TY  LI+GL  
Sbjct: 436 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 495

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L+++M   N    VV  P    ++ + +   K G   KA++L  +M  +  
Sbjct: 496 AGRLNEMEYLYQKMMQNN----VV--PSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRN 549

Query: 195 NPD 197
           N D
Sbjct: 550 NHD 552


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 168/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGCMPSVVT 418



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +GCM  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +   ++ P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 89/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+   K G++  A  + + + +  +RP    +NTLM+G+ 
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  V
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 176/345 (51%), Gaps = 14/345 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLA----KNKHYDTVLSLFKRLNSIGLFPDLYTYNIL 58
           +FD M R   SP      N  FG L     +    + V +L   +   G   D  T  ++
Sbjct: 60  VFDGMTRAGVSP-----MNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVV 114

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           +   C+ GR         R+L +   P+ V +T+ I GLC    + +A  +  ++   G 
Sbjct: 115 VRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGL 174

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           KP+V+T+TTLI+GLC+ G T  A  LF ++   +       KP+  TY+ +  G C+EG 
Sbjct: 175 KPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSY-----KPNVHTYTVMIGGYCREGK 229

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           + +A+ L ++M ++ + P+  TYT+LI G C    ++ A  L  +M  +G  PN+ T+N 
Sbjct: 230 LARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNA 289

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++  CK GK+ EA ++L +    G++ D   Y  L+   C  G +  A +LF  M  NG
Sbjct: 290 VIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENG 349

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C  D+ +Y  LI+ YC+ +++E +   + + L  G+ PT  TY +
Sbjct: 350 CCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTS 394



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 168/332 (50%), Gaps = 7/332 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           +PP V ++      L K ++      + + +   GL P++YT+  LI+  CK+G     F
Sbjct: 139 TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAF 198

Query: 73  VVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
            +  ++++S  + P+  T+T +I G C E ++  A  L  ++   G KP+  TYTTLI G
Sbjct: 199 RLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGG 258

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+ G    A  L  +M     + G +  P+  TY+ + DG CK+G + +A ++      
Sbjct: 259 HCKGGSFDRAFELMNKMK----QEGFL--PNIYTYNAVIDGFCKKGKIQEAYKVLRMATS 312

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + +  D +TYT LI   C       A  LF  M++ G  P++  +  +++  C+  +M+E
Sbjct: 313 QGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEE 372

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           + +  +  + IG+ P    Y +++ G+C  GR   A  +F  M  NGC  D  +YG LI+
Sbjct: 373 SQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALIS 432

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G CK   +E A +LY  ML K + P  VT  T
Sbjct: 433 GLCKESRLEEAKALYEGMLDKRLVPCEVTRVT 464



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 132/279 (47%), Gaps = 6/279 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  +++     P V ++ ++ G   +         L  R+   GL P+  TY  LI 
Sbjct: 198 FRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIG 257

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G     F ++ ++ +  F P+  T+ ++I G C + +I EA  +     + G K 
Sbjct: 258 GHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKF 317

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT LI   C+ GH   AL+LF+ M   NG     C PD   Y+++    C++  ++
Sbjct: 318 DKITYTILITEHCKQGHITYALDLFDRMVE-NG-----CCPDIEAYTSLISTYCQQRQME 371

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           ++++ F K     + P   TYTS+I G+C       A  +F  M+  G   + +T+  ++
Sbjct: 372 ESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALI 431

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           + LCK  +++EA  L E M+   + P      TL   +C
Sbjct: 432 SGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYC 470



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 138/320 (43%), Gaps = 10/320 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L G   K   +D    L  ++   G  P++YTYN +I+ FCK G++   + V
Sbjct: 247 PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKV 306

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L          D +T+T LI   C +  I  A  LF ++   GC PD+  YT+LI+  C+
Sbjct: 307 LRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQ 366

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 +   F++        G++  P   TY+++  G CK G    A  +F +M     
Sbjct: 367 QRQMEESQKFFDKCLM----IGLL--PTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGC 420

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY +LI G C  +   EAK L+  M+D+ + P  VT   +  E C+  K   A  
Sbjct: 421 FADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVS 480

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+   ++  R      + ++      G V+ A      +       D  +Y   IN   
Sbjct: 481 VLD---RLDKRQQVHTVDVVVRKLSALGDVDAASLFLKKVLDEDYAVDHATYTGFINSCY 537

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           +N     A S  SE  SK I
Sbjct: 538 ENNRYALA-SEMSEKFSKKI 556



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 124/281 (44%), Gaps = 30/281 (10%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA--- 149
           ++       R+ EAA +  ++R+ G    V T   ++     TG  + A  +F+ M    
Sbjct: 9   MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 68

Query: 150 -----NGNGEFGVVC---------------------KPDAITYSTITDGLCKEGFVDKAK 183
                 G G   VVC                       D  T + +   LC++G      
Sbjct: 69  VSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 128

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           E F +M +    P+VV YT+ I G C      +A  +  EM+ +G++PNV T   +++ L
Sbjct: 129 EFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 188

Query: 244 CKNGKMDEASRL-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           CK G  + A RL L+L+     +P+   Y  ++ G+C  G++ RA+ L V M   G   +
Sbjct: 189 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 248

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +Y  LI G+CK    + A  L ++M  +G  P + TYN 
Sbjct: 249 TNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNA 289



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 11/211 (5%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+  +   P + ++  L     + +  +     F +   IGL P   TY  +I  +
Sbjct: 341 LFDRMVE-NGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGY 399

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+GR +    V  R++++    D++T+ +LI GLC ESR+ EA AL+  +      P  
Sbjct: 400 CKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCE 459

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T  TL    CR   T +A+++ + +           +    T   +   L   G VD A
Sbjct: 460 VTRVTLTFEYCRREKTSIAVSVLDRLDK---------RQQVHTVDVVVRKLSALGDVDAA 510

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                K+ DE+   D  TYT  I   CY N+
Sbjct: 511 SLFLKKVLDEDYAVDHATYTGFINS-CYENN 540


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 169/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L     K + +DT   +   +   G   +  TYN+LI   C+ G V   F  
Sbjct: 242 PDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGF 301

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD  T+ +LI GLC   R  EA AL  ++     KP+V  Y  LI+G  R
Sbjct: 302 KKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMR 361

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  + +EM       GV  +P+ ITY  +  GLCK G +D+A  L  +M  ++ 
Sbjct: 362 EGNADEAFKMIKEMVAA----GV--QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSH 415

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +TY  +I G    +   +A  L  EM + G+ PNV T++++++ LC++G+ ++AS 
Sbjct: 416 RPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASD 475

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE M   G++P+A VY  L+ G+C  G V+ A E+F  M     + D++ Y  LI G  
Sbjct: 476 LLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLS 535

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +E +   +++M  +G+ P   TY+
Sbjct: 536 KVGRVEESTKYFAQMQERGLLPNEFTYS 563



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 173/364 (47%), Gaps = 41/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  L     +  + D    + K + + G+ P+  TY+ L+   CKMG++    ++
Sbjct: 347 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLL 406

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++R    PD +T+  +I+G        +A  L +++   G  P+V+TY+ +I+GLC+
Sbjct: 407 LKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQ 466

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A +L EEM           KP+A  Y+ +  G C+EG V  A E+F KM   N+
Sbjct: 467 SGEPEKASDLLEEMTTKG------LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNV 520

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+  Y SLI G        E+   F +M ++G+ PN  T++ +++   KNG ++ A +
Sbjct: 521 LPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQ 580

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-------------------- 294
           L++ M+  G++P+  +Y  L++ +  +  + +    F SM                    
Sbjct: 581 LVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLS 640

Query: 295 ---------------ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
                          E NG + DV  Y  LI+G CK  + E A  +  EM  KG+ P +V
Sbjct: 641 SSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIV 700

Query: 340 TYNT 343
            YN 
Sbjct: 701 CYNA 704



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 173/351 (49%), Gaps = 22/351 (6%)

Query: 7   MLRMHPSPPPVCS----------------FNILFGCLAKNKHYDTVLSLFKRLNSIGLFP 50
           M+R +PSPP V +                 ++L     K+        +   +   G+ P
Sbjct: 148 MIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAP 207

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
            +   N L+    +   ++  + V   ++ +  +PD  T+++LI+  C       A  + 
Sbjct: 208 SIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVL 267

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++R  GC  +  TY  LI GLCR+G    A    ++M     ++G+V  PD  TY  + 
Sbjct: 268 VEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME----DYGLV--PDGFTYGALI 321

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +GLCK    ++AK L  +M    + P+VV Y +LI GF    + +EA  +  EM+  GVQ
Sbjct: 322 NGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQ 381

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN +T++ ++  LCK G+MD AS LL+ M++   RPD   YN +++G         A  L
Sbjct: 382 PNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRL 441

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              ME+ G   +V++Y I+I+G C++ E E A  L  EM +KG++P    Y
Sbjct: 442 LSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVY 492



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 162/337 (48%), Gaps = 6/337 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+R     P +   N L   L +      +  + + +   G+ PD+YTY+ LI  +CK+ 
Sbjct: 199 MMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVR 258

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
                  VL  +       + VT+  LI GLC    + EA      +  +G  PD FTY 
Sbjct: 259 EFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYG 318

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC++  +  A  L +EM+          KP+ + Y+ + DG  +EG  D+A ++ 
Sbjct: 319 ALINGLCKSRRSNEAKALLDEMSCAE------LKPNVVVYANLIDGFMREGNADEAFKMI 372

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M    + P+ +TY +L+RG C     + A  L  +M+    +P+ +T+N+I+    ++
Sbjct: 373 KEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRH 432

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
               +A RLL  M   G+ P+   Y+ ++ G C +G   +A +L   M + G   + F Y
Sbjct: 433 HSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVY 492

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI+GYC+   +  A  ++ +M    + P +  YN+
Sbjct: 493 APLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNS 529



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 164/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N++     ++        L   + + G+ P++YTY+I+I+  C+ G       +
Sbjct: 417 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 476

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+A  +  LI G C E  +  A  +F K+      PD++ Y +LI GL +
Sbjct: 477 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 536

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    +   F +M     E G++  P+  TYS +  G  K G ++ A++L  +M D  +
Sbjct: 537 VGRVEESTKYFAQMQ----ERGLL--PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGL 590

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V Y  L+  +  ++D  +    F  M+DQGV  +   + ++++ L  +G M+ A R
Sbjct: 591 KPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFR 650

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  + + G  PD  VY++L+ G C T    +A  +   M   G   ++  Y  LI+G C
Sbjct: 651 VLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLC 710

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+ +I  A ++++ +L+KG+ P  VTY +
Sbjct: 711 KSGDISYARNVFNSILAKGLVPNCVTYTS 739



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 42/363 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++I+   L ++   +    L + + + GL P+ + Y  LI+ +C+ G VS    +
Sbjct: 452 PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEI 511

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++ +    PD   + SLI GL    R+ E+   F +++  G  P+ FTY+ LI+G  +
Sbjct: 512 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 571

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L + M +         KP+ + Y  + +   K   ++K    F  M D+ +
Sbjct: 572 NGDLESAEQLVQRMLDTG------LKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGV 625

Query: 195 N-----------------------------------PDVVTYTSLIRGFCYANDWNEAKC 219
                                               PDV  Y+SLI G C   D  +A  
Sbjct: 626 MLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFG 685

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +  EM  +GV PN+V +N +++ LCK+G +  A  +   ++  G+ P+   Y +L+DG C
Sbjct: 686 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSC 745

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++ A  L+  M + G   D F Y +L  G     ++E A+ L  EM  +G   ++ 
Sbjct: 746 KVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASIS 804

Query: 340 TYN 342
           ++N
Sbjct: 805 SFN 807



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 175/365 (47%), Gaps = 43/365 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M +++  P   C  +++FG L+K    +     F ++   GL P+ +TY+ LI+ +
Sbjct: 511 IFDKMTKVNVLPDLYCYNSLIFG-LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 569

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAV--------------------TFTSLI-KGLCAES 101
            K G +     ++ R+L +   P+ V                    TF S++ +G+  ++
Sbjct: 570 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 629

Query: 102 RI-------------MEAA-ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           RI             MEAA  + + +   G  PDV  Y++LI+GLC+T     A  + +E
Sbjct: 630 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 689

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M+    +  +VC      Y+ + DGLCK G +  A+ +F  +  + + P+ VTYTSLI G
Sbjct: 690 MSKKGVDPNIVC------YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDG 743

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C   D + A  L+ EM+  G+ P+   ++V+       G +++A  L+E M   G    
Sbjct: 744 SCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HAS 802

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
            S +N L+DGFC  G++    +L   +   G + +  +   +I+G  +  ++    +++ 
Sbjct: 803 ISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFV 862

Query: 328 EMLSK 332
           E+  K
Sbjct: 863 ELQQK 867



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 158/362 (43%), Gaps = 60/362 (16%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           K+   + V S FK +   G+  D   Y ILI+     G +   F VL  I ++   PD  
Sbjct: 606 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVH 665

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
            ++SLI GLC  +   +A  +  ++   G  P++  Y  LI+GLC++G    A N+F  +
Sbjct: 666 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 725

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                  G+V  P+ +TY+++ DG CK G +  A  L+ +M    I PD   Y+ L  G 
Sbjct: 726 LAK----GLV--PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 779

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
             A D  +A  L  EM  +G   ++ +FN +++  CK GKM E  +LL +++  G+ P+A
Sbjct: 780 SSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNA 838

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGC----------------------------- 299
                ++ G    G+++    +FV ++                                 
Sbjct: 839 LTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMI 898

Query: 300 --------------MRDVF----------SYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
                         +RDV           SY  +++  C+  ++  AL+L  EM  +GI 
Sbjct: 899 RDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGIC 958

Query: 336 PT 337
           P+
Sbjct: 959 PS 960



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 133/306 (43%), Gaps = 29/306 (9%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V  ++ L   L K    +    +   ++  G+ P++  YN LI+  CK G +S   
Sbjct: 660 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 719

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V   IL     P+ VT+TSLI G C    I  A  L+ ++ A G  PD F Y+ L  G 
Sbjct: 720 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 779

Query: 133 CRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
              G    A+ L EEM   G+            +++ + DG CK G + +  +L   +  
Sbjct: 780 SSAGDLEQAMFLIEEMFLRGHASIS--------SFNNLVDGFCKRGKMQETLKLLHVIMG 831

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIE-------------------MMDQGVQPN 232
             + P+ +T  ++I G   A   +E   +F+E                   M++QG  P 
Sbjct: 832 RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPL 891

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
            V  ++I +  CK G +D+A  L ++++        S Y  ++D  C  G+++ A  L  
Sbjct: 892 DVVDDMIRDH-CKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLK 950

Query: 293 SMESNG 298
            M+  G
Sbjct: 951 EMDKRG 956


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 160/325 (49%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+ IL   L      D    +F +++     P ++TY +L++  CK+ RV     +LG +
Sbjct: 163 SYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEM 222

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P+ VT+ +LI GLC E R  +   L  K+      PD +TYT +++GLC+ G  
Sbjct: 223 VNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKV 282

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
                +  E A G G        + +TY+ + +G CK G +  A ++   MK   +NP V
Sbjct: 283 GHGAKVLHE-AIGKG-----VALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGV 336

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            T+  +I GFC     ++A     +M   G+ PN VTFN +++  C  G+   A RLL+L
Sbjct: 337 QTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDL 396

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + GV PD   Y   +D  C  G++  A  LF  +   G       Y  L++GYC+  +
Sbjct: 397 MEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGD 456

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           I+ A  L  +M S+   P V TYNT
Sbjct: 457 IDSAFGLMEKMASENCMPDVHTYNT 481



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 160/328 (48%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   L K +      +L   + + G+ P++ TYN LI   C+ GR      +
Sbjct: 194 PGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKL 253

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++     +PD  T+T ++ GLC   ++   A +  +    G   +V TY  LING C+
Sbjct: 254 LEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCK 313

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL++ + M            P   T++ +  G C  G V KA     +M    +
Sbjct: 314 GGDMKAALDVLQLMKRNR------VNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGL 367

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ VT+ SLI G C   +   A  L   M + GV P+  T+ + ++ LC  G+++EA  
Sbjct: 368 SPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHS 427

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +   G++    +Y +L+ G+C  G ++ A  L   M S  CM DV +Y  LI+G C
Sbjct: 428 LFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLC 487

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K K ++ A+ L  +M  +GI PT  T+N
Sbjct: 488 KVKRLDRAIDLLDKMKKQGIEPTTCTFN 515



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 147/296 (49%), Gaps = 9/296 (3%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVL----GRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           D+ ++N  +  +   G  +P    L    G +L+S   P+  T+ +LI   C  + + +A
Sbjct: 50  DVRSHNAALIAYSSRGSRAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADA 109

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
            A   ++R  G  PD FTY  L+ GLCR G    A  LF +M    G     C  D  +Y
Sbjct: 110 RAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWG----ACY-DRYSY 164

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + +  GLC  G +D A  +F KM      P V TYT L+ G C      EA+ L  EM++
Sbjct: 165 TILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVN 224

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +GV PNVVT+N ++  LC+ G+ D+ ++LLE M      PD   Y  ++ G C  G+V  
Sbjct: 225 KGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGH 284

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             ++       G   +V +Y  LINGYCK  +++ AL +   M    + P V T+N
Sbjct: 285 GAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFN 340



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 162/309 (52%), Gaps = 7/309 (2%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
           +L+ F  +   G  P+  TYN LIN  CK+  ++     L R+  +   PD  T+  L+ 
Sbjct: 74  LLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLML 133

Query: 96  GLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
           GLC    +  A  LF ++ R +G   D ++YT LI GLC  G    A  +F +M+ G   
Sbjct: 134 GLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRG--- 190

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
               C+P   TY+ + DGLCK   V +A+ L  +M ++ + P+VVTY +LI G C    +
Sbjct: 191 ---WCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRF 247

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           ++   L  +M  Q   P+  T+  +++ LCK+GK+   +++L   I  GV  +   YN L
Sbjct: 248 DDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNAL 307

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           ++G+C  G +  A ++   M+ N     V ++  +I+G+C   ++  A++  ++M   G+
Sbjct: 308 INGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGL 367

Query: 335 RPTVVTYNT 343
            P  VT+N+
Sbjct: 368 SPNTVTFNS 376



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 168/369 (45%), Gaps = 49/369 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTY------------------- 55
           P V ++N L G L +   +D V  L +++      PD +TY                   
Sbjct: 229 PNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKV 288

Query: 56  ----------------NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
                           N LIN +CK G +     VL  + R+   P   TF  +I G C 
Sbjct: 289 LHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCC 348

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             ++ +A A  T++   G  P+  T+ +LI+G C  G   +AL L + M     E+GV+ 
Sbjct: 349 GGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLME----EYGVL- 403

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            PD  TY+   D LC EG +++A  LF  +  + I    V YTSL+ G+C   D + A  
Sbjct: 404 -PDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFG 462

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  +M  +   P+V T+N +++ LCK  ++D A  LL+ M + G+ P    +N L+    
Sbjct: 463 LMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQML 522

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILIN-----GYCKNKEIEGALSLYSEMLSKGI 334
              +   A +++  M S+GC  D  +Y + I+     G  K + I+ A+    EM   G+
Sbjct: 523 WDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAV---VEMHEAGV 579

Query: 335 RPTVVTYNT 343
            P V TYN 
Sbjct: 580 FPDVETYNA 588



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 24/317 (7%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D+   L +++ S    PD++TYN LI+  CK+ R+     +L ++ +    P   TF  L
Sbjct: 458 DSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNIL 517

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI---VALNLFEEMAN 150
           IK +  + +  +AA ++ ++ + GCKPD  TYT  I+     G T    + + + E    
Sbjct: 518 IKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMH-- 575

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
              E GV   PD  TY+ I       G  +KA    +KM    I+PD  TY+ L+   C 
Sbjct: 576 ---EAGVF--PDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCN 630

Query: 211 AND---------WN-----EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            +D         W        + LF +M +    P + T+  ++  LC   +++E   LL
Sbjct: 631 KDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLL 690

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M    +  D  + + L+  +C       A E F SM        + S  +L++G C +
Sbjct: 691 LKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSGLCDS 750

Query: 317 KEIEGALSLYSEMLSKG 333
            +   A+S++S+ML  G
Sbjct: 751 GDHGMAVSIFSDMLGLG 767



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 128/312 (41%), Gaps = 22/312 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P  C+FNIL   +  +K +     +++++ S G  PD  TY + I+     G      + 
Sbjct: 509 PTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENID 568

Query: 75  LG--RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           +    +  +   PD  T+ ++IK         +A     K+ +    PD  TY+ L+N +
Sbjct: 569 MAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYM 628

Query: 133 CRTGHTIVALN--------------LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           C    +    N              LFE+M   +   G+       TY  +  GLC +  
Sbjct: 629 CNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGIS------TYKALLRGLCNQCR 682

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +++ + L LKM+  +I  D      L+  +C    + EA   F  M  Q  QP + +  +
Sbjct: 683 LEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCL 742

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ LC +G    A  +   M+ +G   D  V+  L+D     G      E+   M++  
Sbjct: 743 LLSGLCDSGDHGMAVSIFSDMLGLGYNYDEVVWKLLIDCLHEKGHAGACLEMLSVMDAKK 802

Query: 299 CMRDVFSYGILI 310
           C+    +Y  L+
Sbjct: 803 CVASTRTYASLV 814



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 95/251 (37%), Gaps = 57/251 (22%)

Query: 7   MLRMHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC- 63
           ++ MH +   P V ++N +          +       ++ S+ + PD  TY+IL+N  C 
Sbjct: 571 VVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCN 630

Query: 64  -------------KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
                        KM  V     +  ++  S   P   T+ +L++GLC + R+ E   L 
Sbjct: 631 KDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLL 690

Query: 111 TKLRA-------------FGC----------------------KPDVFTYTTLINGLCRT 135
            K++               GC                      +P + +   L++GLC +
Sbjct: 691 LKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSGLCDS 750

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           G   +A+++F +M       G+    D + +  + D L ++G      E+   M  +   
Sbjct: 751 GDHGMAVSIFSDM------LGLGYNYDEVVWKLLIDCLHEKGHAGACLEMLSVMDAKKCV 804

Query: 196 PDVVTYTSLIR 206
               TY SL+R
Sbjct: 805 ASTRTYASLVR 815


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 170/314 (54%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM+ +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G +P+VVT
Sbjct: 405 KEMQRDGYKPSVVT 418



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 136/252 (53%), Gaps = 6/252 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K    +    L   + + G+ PD+YTY++LIN  CK  ++    V+
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P+ VTFT+LI G C   R+  A  ++ ++ +    PD+ TY TLI GLC+
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L +EM           KPD ITY+T+ DG CKEG ++ A E   +M  ENI
Sbjct: 289 KGDLKQAQDLIDEMIMKG------LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENI 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V YT+LI G C      +A+ +  EM+  G++P + T+ +I+NE CK G +   S+
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSK 402

Query: 255 LLELMIQIGVRP 266
           LL+ M + G +P
Sbjct: 403 LLKEMQRDGYKP 414



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 156/285 (54%), Gaps = 6/285 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 6/252 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F  L+ G   E  I  A ++F  +  +G +P V ++ TL+NG  + G     LN    + 
Sbjct: 139 FNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGD----LNEGFRLK 194

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           N     GV  +PD  TYS + +GLCKE  +D A  LF +M D+ + P+ VT+T+LI G C
Sbjct: 195 NAMQASGV--QPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L++ MI  G++PD  
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKI 312

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y TL+DG C  G +  A E    M       D  +Y  LI+G C+      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 330 LSKGIRPTVVTY 341
           LS G++P + TY
Sbjct: 373 LSVGLKPEIGTY 384



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 102/178 (57%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +  G  KEG +  A+ +F  +    + P VV++ +L+ G+    D NE   L   M 
Sbjct: 139 FNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM+ KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTT 316



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+   K G++  A  + + + + G+RP    +NTLM+G+ 
Sbjct: 123 FYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +N    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  V
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246



 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+ M    P   ++  L     K    +T     KR+    +  D   Y  LI+  
Sbjct: 298 LIDEMI-MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR      +L  +L     P+  T+T +I   C +  +   + L  +++  G KP V
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSV 416

Query: 123 FT 124
            T
Sbjct: 417 VT 418


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 183/369 (49%), Gaps = 33/369 (8%)

Query: 7   MLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           M +M  S   P + ++N +     K   +   + L   + S G+  D+ TYN+LI+  C+
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
             R++ G+++L  + +    P+ VT+ +LI G   E +++ A+ L  ++ +FG  P+  T
Sbjct: 276 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 335

Query: 125 YTTLINGLCRTGHTIVALNLFEEM-ANG-----------------NGEFGV--------- 157
           +  LI+G    G+   AL +F  M A G                 N EF +         
Sbjct: 336 FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMK 395

Query: 158 ---VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
              VC    ITY+ + DGLCK GF+D+A  L  +M  + I+PD+VTY++LI GFC    +
Sbjct: 396 RNGVC-VGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRF 454

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             AK +   +   G+ PN + ++ ++   C+ G + EA R+ E MI  G   D   +N L
Sbjct: 455 KTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVL 514

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +   C  G+V  A+E    M S+G + +  S+  LINGY  + E   A S++ EM   G 
Sbjct: 515 VTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGH 574

Query: 335 RPTVVTYNT 343
            PT  TY +
Sbjct: 575 HPTFFTYGS 583



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 161/357 (45%), Gaps = 29/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FNIL   L     ++    L +++   G  P + TYN +++ +CK GR      +
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +       D  T+  LI  LC  +RI +   L   +R     P+  TY TLING   
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310

Query: 135 TGHTIVALNLFEEMAN------------------GNGEFGVVCK-----------PDAIT 165
            G  ++A  L  EM +                    G F    K           P  ++
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y  + DGLCK    D A+  +++MK   +    +TYT +I G C     +EA  L  EM 
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G+ P++VT++ ++N  CK G+   A  ++  + ++G+ P+  +Y+TL+   C  G + 
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A  ++ +M   G  RD F++ +L+   CK  ++  A      M S GI P  V+++
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFD 547



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 157/335 (46%), Gaps = 8/335 (2%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R+  S P V  ++IL     +       L +F+ +   G  P +YT N ++    K G  
Sbjct: 117 RLCNSNPSV--YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGED 174

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
              +  L  +L+    PD  TF  LI  LCAE    +++ L  K+   G  P + TY T+
Sbjct: 175 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTV 234

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           ++  C+ G    A+ L + M +     GV    D  TY+ +   LC+   + K   L   
Sbjct: 235 LHWYCKKGRFKAAIELLDHMKSK----GV--DADVCTYNMLIHDLCRSNRIAKGYLLLRD 288

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M+   I+P+ VTY +LI GF        A  L  EM+  G+ PN VTFN +++     G 
Sbjct: 289 MRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGN 348

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
             EA ++  +M   G+ P    Y  L+DG C     + A+  ++ M+ NG      +Y  
Sbjct: 349 FKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTG 408

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +I+G CKN  ++ A+ L +EM   GI P +VTY+ 
Sbjct: 409 MIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 443



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N + G + K+    +V S  K +    + PD+ T+NILIN  C  G       +
Sbjct: 156 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYL 215

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++ +S + P  VT+ +++   C + R   A  L   +++ G   DV TY  LI+ LCR
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +        L  +M         +  P+ +TY+T+ +G   EG V  A +L  +M    +
Sbjct: 276 SNRIAKGYLLLRDMRKR------MIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGL 329

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ VT+ +LI G     ++ EA  +F  M  +G+ P+ V++ V+++ LCKN + D A  
Sbjct: 330 SPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARG 389

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M + GV      Y  ++DG C  G ++ A  L   M  +G   D+ +Y  LING+C
Sbjct: 390 FYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFC 449

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K    + A  +   +   G+ P  + Y+T
Sbjct: 450 KVGRFKTAKEIVCRIYRVGLSPNGIIYST 478



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 9/338 (2%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           YM+      P   S+ +L   L KN  +D     + R+   G+     TY  +I+  CK 
Sbjct: 357 YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKN 416

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G +    V+L  + +    PD VT+++LI G C   R   A  +  ++   G  P+   Y
Sbjct: 417 GFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIY 476

Query: 126 TTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           +TLI   CR G    A+ ++E M   G+         D  T++ +   LCK G V +A+E
Sbjct: 477 STLIYNCCRMGCLKEAIRIYEAMILEGHTR-------DHFTFNVLVTSLCKAGKVAEAEE 529

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
               M  + I P+ V++  LI G+  + +  +A  +F EM   G  P   T+  ++  LC
Sbjct: 530 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 589

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K G + EA + L+ +  +    D  +YNTL+   C +G + +A  LF  M     + D +
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKG-IRPTVVTY 341
           +Y  LI+G C+  +   A+    E  ++G + P  V Y
Sbjct: 650 TYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMY 687



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 159/343 (46%), Gaps = 11/343 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + ML    SP  V +FN L        ++   L +F  + + GL P   +Y +L++  
Sbjct: 320 LLNEMLSFGLSPNHV-TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378

Query: 63  CKMGR--VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CK     ++ GF +  R+ R+      +T+T +I GLC    + EA  L  ++   G  P
Sbjct: 379 CKNAEFDLARGFYM--RMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDP 436

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+ TY+ LING C+ G    A  +   +      + V   P+ I YST+    C+ G + 
Sbjct: 437 DIVTYSALINGFCKVGRFKTAKEIVCRI------YRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  ++  M  E    D  T+  L+   C A    EA+     M   G+ PN V+F+ ++
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N    +G+  +A  + + M ++G  P    Y +L+ G C  G +  A++   S+ +    
Sbjct: 551 NGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAA 610

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D   Y  L+   CK+  +  A+SL+ EM+ + I P   TY +
Sbjct: 611 VDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTS 653



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 154/327 (47%), Gaps = 11/327 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FN+L   L K           + + S G+ P+  +++ LIN +   G     F V   +
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 569

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +    P   T+ SL+KGLC    + EA      L A     D   Y TL+  +C++G+ 
Sbjct: 570 TKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNL 629

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE--NINP 196
             A++LF EM   +        PD+ TY+++  GLC++G    A  LF K  +   N+ P
Sbjct: 630 AKAVSLFGEMVQRS------ILPDSYTYTSLISGLCRKGKTVIAI-LFAKEAEARGNVLP 682

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRL 255
           + V YT  + G   A  W +A   F E MD  G  P++VT N +++   + GK+++ + L
Sbjct: 683 NKVMYTCFVDGMFKAGQW-KAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDL 741

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           L  M      P+ + YN L+ G+     V+ +  L+ S+  NG + D  +   L+ G C+
Sbjct: 742 LPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICE 801

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +  +E  L +    + +G+     T+N
Sbjct: 802 SNMLEIGLKILKAFICRGVEVDRYTFN 828



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 159/342 (46%), Gaps = 8/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M ++    P   ++  L   L K  H        K L+++    D   YN L+ 
Sbjct: 563 FSVFDEMTKV-GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLT 621

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CK 119
             CK G ++    + G +++    PD+ T+TSLI GLC + + + A     +  A G   
Sbjct: 622 AMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVL 681

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+   YT  ++G+ + G     +   E+M N      +   PD +T + + DG  + G +
Sbjct: 682 PNKVMYTCFVDGMFKAGQWKAGIYFREQMDN------LGHTPDIVTTNAMIDGYSRMGKI 735

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +K  +L  +M ++N  P++ TY  L+ G+    D + +  L+  ++  G+ P+ +T + +
Sbjct: 736 EKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 795

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  +C++  ++   ++L+  I  GV  D   +N L+   C  G +N A +L   M S G 
Sbjct: 796 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGI 855

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             D  +   +++   +N   + +  +  EM  +GI P    Y
Sbjct: 856 SLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 897



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 141/297 (47%), Gaps = 12/297 (4%)

Query: 50   PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
            P+L TYNIL++ + K   VS  F++   I+ +   PD +T  SL+ G+C ES ++E    
Sbjct: 752  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC-ESNMLEIG-- 808

Query: 110  FTKLRAFGCKP---DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
               L+AF C+    D +T+  LI+  C  G    A +L + M +     G+    D  T 
Sbjct: 809  LKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS----LGISLDKD--TC 862

Query: 167  STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
              +   L +     +++ +  +M  + I+P+   Y  LI G C   D   A  +  EM+ 
Sbjct: 863  DAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIA 922

Query: 227  QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
              + P  V  + ++  L K GK DEA+ LL  M+++ + P  + + TLM   C  G V  
Sbjct: 923  HKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIE 982

Query: 287  AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A EL V M + G   D+ SY +LI G C   ++  A  LY EM   G      TY  
Sbjct: 983  ALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKA 1039



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 139/276 (50%), Gaps = 7/276 (2%)

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G+ S  F  L    R C +  +V +  LI+    E  I ++  +F  +  +G  P V+T 
Sbjct: 103 GKSSFVFGALMTTYRLCNSNPSV-YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTC 161

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
             ++  + ++G  +   +  +EM         +C PD  T++ + + LC EG  +K+  L
Sbjct: 162 NAILGSVVKSGEDVSVWSFLKEMLKRK-----IC-PDVATFNILINVLCAEGSFEKSSYL 215

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             KM+     P +VTY +++  +C    +  A  L   M  +GV  +V T+N+++++LC+
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           + ++ +   LL  M +  + P+   YNTL++GF   G+V  A +L   M S G   +  +
Sbjct: 276 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 335

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  LI+G+      + AL ++  M +KG+ P+ V+Y
Sbjct: 336 FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 371



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 17/233 (7%)

Query: 128 LINGLCRTGHTIV-------ALNLFEEMANGNGE----FGVV------CKPDAITYSTIT 170
           ++  +C T H +V       A ++ +E++  +G+    FG +      C  +   Y  + 
Sbjct: 71  IVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILI 130

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
               +EG +  + E+F  M     NP V T  +++     + +         EM+ + + 
Sbjct: 131 RVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKIC 190

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+V TFN+++N LC  G  +++S L++ M + G  P    YNT++  +C  GR   A EL
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M+S G   DV +Y +LI+  C++  I     L  +M  + I P  VTYNT
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNT 303



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 100/237 (42%), Gaps = 8/237 (3%)

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
            AL T  R     P V  Y  LI    R G    +L +F  M    G +G    P   T 
Sbjct: 110 GALMTTYRLCNSNPSV--YDILIRVYLREGMIQDSLEIFRLM----GLYGF--NPSVYTC 161

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + I   + K G          +M    I PDV T+  LI   C    + ++  L  +M  
Sbjct: 162 NAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEK 221

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G  P +VT+N +++  CK G+   A  LL+ M   GV  D   YN L+   C + R+ +
Sbjct: 222 SGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAK 281

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L   M       +  +Y  LING+    ++  A  L +EMLS G+ P  VT+N 
Sbjct: 282 GYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNA 338



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 11   HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
            H   PP  + + +   LAK    D    L + +  + L P + ++  L++  CK G V  
Sbjct: 923  HKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIE 982

Query: 71   GFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
              + L  ++ +C    D V++  LI GLCA+  +  A  L+ +++  G   +  TY  LI
Sbjct: 983  A-LELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALI 1041

Query: 130  NGL 132
             GL
Sbjct: 1042 RGL 1044


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 174/343 (50%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D M+  H   P   ++N+L   L +        +L   + S  + PD +TY+IL +
Sbjct: 255 FRLRDQMV-CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 313

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              + G       + G+ L++  T    T + L+ GLC + ++  A  +   L   G  P
Sbjct: 314 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 373

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               Y TLING C+TG    A + F +M + +       KPD ITY+ + +GLCK   + 
Sbjct: 374 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRH------IKPDHITYNALINGLCKAERIT 427

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A++L ++M+D  +NP V T+ +LI  +       +   +  EM + G++PNVV++  I+
Sbjct: 428 NAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIV 487

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N  CKNGK+ EA  +L+ M    V P+A VYN ++D +   G  ++A  L   M+SNG  
Sbjct: 488 NAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGIS 547

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             + +Y +LI G C   +I  A  + + + +  + P  V+YNT
Sbjct: 548 PSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNT 590



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 170/337 (50%), Gaps = 6/337 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M R    PP   S+N++   + +       + +F  +    + P+  TYN +I+   K G
Sbjct: 190 MGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGG 249

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +  GF +  +++     P+A+T+  L+ GLC   R+ E +AL  ++ +    PD FTY+
Sbjct: 250 DLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYS 309

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            L +GL R G +   L+LF +        G        T S + +GLCK+G V  A+E+ 
Sbjct: 310 ILFDGLSRNGDSKAMLSLFGKYLKNGVTIG------DYTCSILLNGLCKDGKVSIAEEVL 363

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             + +  + P  V Y +LI G+C   +   A   F +M  + ++P+ +T+N ++N LCK 
Sbjct: 364 QSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKA 423

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            ++  A  LL  M   GV P    +NTL+D +  TG++ +   +   M+ NG   +V SY
Sbjct: 424 ERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSY 483

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G ++N +CKN +I  A+++  +M  K + P    YN 
Sbjct: 484 GSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNA 520



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 168/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ILF  L++N     +LSLF +    G+    YT +IL+N  CK G+VS    V
Sbjct: 303 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 362

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   P  V + +LI G C    +  A + F ++++   KPD  TY  LINGLC+
Sbjct: 363 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 422

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A +L  EM + NG       P   T++T+ D   + G ++K   +  +M++  +
Sbjct: 423 AERITNAQDLLMEMQD-NG-----VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 476

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV+Y S++  FC      EA  +  +M  + V PN   +N I++   ++G  D+A  
Sbjct: 477 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 536

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+E M   G+ P    YN L+ G C   +++ A+E+  S+ ++  + D  SY  LI+  C
Sbjct: 537 LVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACC 596

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
               I+ AL L   M   GI+ TV TY+
Sbjct: 597 YRGNIDKALDLQQRMHKYGIKSTVRTYH 624



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 153/317 (48%), Gaps = 14/317 (4%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS-CFTPDAVT 89
           +H D V   F  L S G  PD + +N  +      G +     +L R+ R     P+A +
Sbjct: 144 RHAD-VRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFS 202

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           +  +I G+    R  +A  +F ++      P+  TY T+I+G  + G       L ++M 
Sbjct: 203 YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM- 261

Query: 150 NGNGEFGVVC---KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
                   VC   KP+AITY+ +  GLC+ G + +   L  +M  + + PD  TY+ L  
Sbjct: 262 --------VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFD 313

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G     D      LF + +  GV     T ++++N LCK+GK+  A  +L+ ++  G+ P
Sbjct: 314 GLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 373

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
              +YNTL++G+C TG +  A   F  M+S     D  +Y  LING CK + I  A  L 
Sbjct: 374 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 433

Query: 327 SEMLSKGIRPTVVTYNT 343
            EM   G+ PTV T+NT
Sbjct: 434 MEMQDNGVNPTVETFNT 450



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 151/341 (44%), Gaps = 29/341 (8%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +IL   L K+        + + L + GL P    YN LIN +C+ G +   F   G++  
Sbjct: 344 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 403

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD +T+ +LI GLC   RI  A  L  +++  G  P V T+ TLI+   RTG    
Sbjct: 404 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 463

Query: 141 ALNLFEEMANGNGEFGVV---------CK--------------------PDAITYSTITD 171
              +  EM     +  VV         CK                    P+A  Y+ I D
Sbjct: 464 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 523

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + G  D+A  L  KMK   I+P +VTY  LI+G C  +  +EA+ +   + +  + P
Sbjct: 524 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 583

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           + V++N +++  C  G +D+A  L + M + G++     Y+ L+ G    GR+N  + L+
Sbjct: 584 DAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLY 643

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
             M  N  +     + I++  Y K      A  L  EML K
Sbjct: 644 QKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQK 684



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 144/296 (48%), Gaps = 7/296 (2%)

Query: 49  FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108
            P L + N+L+     +GR +      G +  +   PD   +   ++   A   + EA  
Sbjct: 126 LPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVG 185

Query: 109 LFTKLRAFGCKP-DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
           +  ++   G  P + F+Y  +I G+ R G    A+ +F+EM     E  V+  P+ ITY+
Sbjct: 186 MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMT----ERAVL--PNHITYN 239

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           T+ DG  K G ++    L  +M    + P+ +TY  L+ G C A    E   L  EM  Q
Sbjct: 240 TMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQ 299

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
            + P+  T++++ + L +NG       L    ++ GV       + L++G C  G+V+ A
Sbjct: 300 KMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIA 359

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +E+  S+ + G +     Y  LINGYC+  E+EGA S + +M S+ I+P  +TYN 
Sbjct: 360 EEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNA 415



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 6/183 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N +     ++   D    L +++ S G+ P + TYN+LI   C   ++S    +
Sbjct: 513 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 572

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PDAV++ +LI   C    I +A  L  ++  +G K  V TY  LI+GL  
Sbjct: 573 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 632

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L+++M   N    VV  P    ++ + +   K G   KA++L  +M  +  
Sbjct: 633 AGRLNEMEYLYQKMMQNN----VV--PSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRN 686

Query: 195 NPD 197
           N D
Sbjct: 687 NHD 689


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 171/319 (53%), Gaps = 6/319 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++ +L   L KN        +++++   G+FP+LYTYN ++N  CK GR    F +   +
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEM 294

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                + + VT+ +LI GLC E +  EA  +  ++++ G  P++ TY TLI+G C  G  
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL+L  ++ +          P  +TY+ +  G CK+G    A ++  +M++  I P  
Sbjct: 355 GKALSLCRDLKSRG------LSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSK 408

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           +TYT LI  F   ++  +A  L   M + G+ P+V T++V+++  C  G+M+EASRL +L
Sbjct: 409 ITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKL 468

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+   + P+  +YNT++ G+C  G   RA  LF  ME      +V SY  +I   CK ++
Sbjct: 469 MVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERK 528

Query: 319 IEGALSLYSEMLSKGIRPT 337
            + A  L  +M+  GI P+
Sbjct: 529 SKEAEGLVEKMIDTGIDPS 547



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 13/342 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +  Y+     S      + ++     +++  D+ +S F  +   G  P    +N L+   
Sbjct: 80  LLHYVTESETSETKSRLYEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFV 139

Query: 63  CKMGRVSPGFVVLGRILRSCFTP---DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
                 S  F    R           D  +F  +IKG C    I ++  L  +LR FG  
Sbjct: 140 VG----SSSFNQWWRFFNESKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFS 195

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+V  YTTLI+G C+ G    A +LF EM    G+FG+V   +  TY+ +  GL K G  
Sbjct: 196 PNVVIYTTLIDGCCKRGEIEKAKDLFFEM----GKFGLVA--NEWTYTVLIHGLFKNGIK 249

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            +  E++ KM+++ + P++ TY  ++   C      +A  LF EM ++GV  N+VT+N +
Sbjct: 250 KQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTL 309

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  LC+  K +EA+++++ M   G+ P+   YNTL+DGFC  G++ +A  L   ++S G 
Sbjct: 310 IGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGL 369

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              + +Y IL++G+CK  +  GA  +  EM  +GI+P+ +TY
Sbjct: 370 SPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITY 411



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 168/328 (51%), Gaps = 41/328 (12%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D+Y++ I+I   C+ G +   F +L  +    F+P+ V +T+LI G C    I +A  LF
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLF 221

Query: 111 TKLRAFGCKPDVFTYTTLINGL-----------------------------------CRT 135
            ++  FG   + +TYT LI+GL                                   C+ 
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKD 281

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           G T  A  LF+EM     E GV C  + +TY+T+  GLC+E   ++A ++  +MK + IN
Sbjct: 282 GRTKDAFKLFDEMR----ERGVSC--NIVTYNTLIGGLCREMKANEANKVMDQMKSDGIN 335

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+++TY +LI GFC      +A  L  ++  +G+ P++VT+N++++  CK G    A ++
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKV 395

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           ++ M + G++P    Y  L+D F     + +A +L   ME  G   DV +Y +LI+G+C 
Sbjct: 396 VKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCI 455

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++  A  L+  M++K + P  V YNT
Sbjct: 456 KGQMNEASRLFKLMVAKKLEPNKVIYNT 483



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 169/341 (49%), Gaps = 10/341 (2%)

Query: 4   FDYMLRMHP---SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           FD ++ +     SP  V    ++ GC  K    +    LF  +   GL  + +TY +LI+
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGC-CKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIH 241

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K G    GF +  ++      P+  T+  ++   C + R  +A  LF ++R  G   
Sbjct: 242 GLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSC 301

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY TLI GLCR      A  + ++M +          P+ ITY+T+ DG C  G + 
Sbjct: 302 NIVTYNTLIGGLCREMKANEANKVMDQMKSDG------INPNLITYNTLIDGFCGVGKLG 355

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA  L   +K   ++P +VTY  L+ GFC   D + A  +  EM ++G++P+ +T+ +++
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILI 415

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   +   M++A +L   M ++G+ PD   Y+ L+ GFC+ G++N A  LF  M +    
Sbjct: 416 DTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLE 475

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +   Y  ++ GYCK      AL L+ EM  K + P V +Y
Sbjct: 476 PNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASY 516



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M R       + ++N L G L +    +    +  ++ S G+ P+L TYN LI+
Sbjct: 288 FKLFDEM-RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLID 346

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FC +G++     +   +     +P  VT+  L+ G C +     A  +  ++   G KP
Sbjct: 347 GFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKP 406

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
              TYT LI+   R  +   A+ L   M     E G+   PD  TYS +  G C +G ++
Sbjct: 407 SKITYTILIDTFARMDNMEKAIQLRSPME----ELGLT--PDVHTYSVLIHGFCIKGQMN 460

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  LF  M  + + P+ V Y +++ G+C       A  LF EM ++ + PNV ++  ++
Sbjct: 461 EASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMI 520

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             LCK  K  EA  L+E MI  G+ P  S+ N +
Sbjct: 521 EVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLI 554



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 7/219 (3%)

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  +IN   ++     +++ F EM +     G  C  + +T+   +    +         
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWW------- 149

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
            F       ++ DV ++  +I+G C A +  ++  L +E+ + G  PNVV +  +++  C
Sbjct: 150 RFFNESKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCC 209

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K G++++A  L   M + G+  +   Y  L+ G    G   +  E++  M+ +G   +++
Sbjct: 210 KRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLY 269

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +Y  ++N +CK+   + A  L+ EM  +G+   +VTYNT
Sbjct: 270 TYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNT 308



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 34/208 (16%)

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +  G  +  F   +  L    + E        Y  +I  +  +   + +   F EM+D+G
Sbjct: 65  VISGKIQSQFFTSSSLLHYVTESETSETKSRLYEVMINAYVQSQSLDSSISYFNEMVDKG 124

Query: 229 VQP----------------------------------NVVTFNVIMNELCKNGKMDEASR 254
             P                                  +V +F +++   C+ G+++++  
Sbjct: 125 FVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIKVDLDVYSFGIVIKGCCEAGEIEKSFD 184

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  + + G  P+  +Y TL+DG C  G + +AK+LF  M   G + + ++Y +LI+G  
Sbjct: 185 LLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLF 244

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           KN   +    +Y +M   G+ P + TYN
Sbjct: 245 KNGIKKQGFEMYEKMQEDGVFPNLYTYN 272



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 19/152 (12%)

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA-- 268
            N ++ A+ L ++++   +Q    T + +++ + ++   +  SRL E+MI   V+  +  
Sbjct: 52  GNLYSHAQSLLLQVISGKIQSQFFTSSSLLHYVTESETSETKSRLYEVMINAYVQSQSLD 111

Query: 269 ---SVYNTLMDGFCLTGR--VNRAKELFVSMES-NGCMR-----------DVFSYGILIN 311
              S +N ++D   + G    N      V   S N   R           DV+S+GI+I 
Sbjct: 112 SSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIKVDLDVYSFGIVIK 171

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G C+  EIE +  L  E+   G  P VV Y T
Sbjct: 172 GCCEAGEIEKSFDLLVELREFGFSPNVVIYTT 203


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 173/339 (51%), Gaps = 9/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F++M R+H   P + +  +L   LAK +  + V  ++K++  +G+ P+++ +N+LI+  
Sbjct: 149 VFEHM-RVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHAC 207

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G V     +L  +      PD  T+ +LI   C +    EA  +  ++   G  PD+
Sbjct: 208 CKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDI 267

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY +LI G CR G    AL LF E+   NG       P+ +TY+T+ DG C+   +++A
Sbjct: 268 VTYNSLIYGFCREGRMREALRLFREI---NG-----ATPNHVTYTTLIDGYCRVNDLEEA 319

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M+ E ++P VVTY S++R  C      +A  L  EM ++ V+P+ VT N ++N 
Sbjct: 320 LRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINA 379

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G M  A ++ + M++ G++PD   +  L+ GFC    V+ AKE    M   G    
Sbjct: 380 YCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPS 439

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +Y  L++ Y      E  + L  E+  KG+   +  Y
Sbjct: 440 YSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVY 478



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 177/343 (51%), Gaps = 13/343 (3%)

Query: 3   IFDYMLRMHPSP---PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           + + ++R+H  P     + S+ ++F   A ++     + +F+ +   G  P L+   +L+
Sbjct: 112 VLNAVVRIHDDPDSNSQILSWLVIF--YANSRMTQDAIQVFEHMRVHGFKPHLHACTVLL 169

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           N   K    +  + V  +++R    P+   F  LI   C    + +A  L  ++ +    
Sbjct: 170 NSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIF 229

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD+FTY TLI+  C+ G    AL + + M  G    GV   PD +TY+++  G C+EG +
Sbjct: 230 PDLFTYNTLISLYCKKGMHYEALGIQDRMERG----GV--SPDIVTYNSLIYGFCREGRM 283

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            +A  LF ++      P+ VTYT+LI G+C  ND  EA  L   M  +G+ P VVT+N I
Sbjct: 284 REALRLFREIN--GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSI 341

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           + +LC+ GK+ +A+RLL  M +  V PD    NTL++ +C  G +  A ++   M   G 
Sbjct: 342 LRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGL 401

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             D F++  LI+G+CK  E++ A     EML  G  P+  TY+
Sbjct: 402 KPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYS 444



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 160/356 (44%), Gaps = 31/356 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  FN+L     K+   +    L   + S  +FPDL+TYN LI+ +CK G       +
Sbjct: 195 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+ R   +PD VT+ SLI G C E R+ EA  LF ++   G  P+  TYTTLI+G CR
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDGYCR 312

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----------------------------CKPDAIT 165
                 AL L E M       GVV                              +PD +T
Sbjct: 313 VNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVT 372

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
            +T+ +  CK G +  A ++  KM +  + PD  T+ +LI GFC  ++ + AK    EM+
Sbjct: 373 CNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEML 432

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D G  P+  T++ +++        +   RL + + + G+  D SVY  L+   C   ++ 
Sbjct: 433 DAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIE 492

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            A+ +F  M+  G   D   Y  L   Y K  +   A  +  EM  + +  T+  Y
Sbjct: 493 SAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIY 548



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 149/323 (46%), Gaps = 30/323 (9%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82
           +   LAK+K + T  +L +R+                         SP   VL  ++R  
Sbjct: 81  MIHTLAKHKQFKTAQNLLERIAVRDYLS------------------SPS--VLNAVVRIH 120

Query: 83  FTPDAVT-FTSLIKGLCAESRI-MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
             PD+ +   S +    A SR+  +A  +F  +R  G KP +   T L+N L +   T +
Sbjct: 121 DDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNM 180

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
              ++++M       GVV  P+   ++ +    CK G V+KA++L  +M+   I PD+ T
Sbjct: 181 VWKVYKKMV----RVGVV--PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFT 234

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y +LI  +C      EA  +   M   GV P++VT+N ++   C+ G+M EA RL   + 
Sbjct: 235 YNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREIN 294

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             G  P+   Y TL+DG+C    +  A  L   ME  G    V +Y  ++   C+  +I+
Sbjct: 295 --GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIK 352

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A  L +EM  + + P  VT NT
Sbjct: 353 DANRLLNEMSERKVEPDNVTCNT 375


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 172/328 (52%), Gaps = 9/328 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           + ++NI+   L  +        L K+L N     PD  T+  LI+  C+ G  +  F +L
Sbjct: 368 ITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEIL 427

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
                S    D  +++S+I   C + R  +A  ++  +   GCKP+   Y  LING CR 
Sbjct: 428 EDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRV 487

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A+ ++ EM + NG     C P  ITY+T+ DGLCK     +A  L  +M +    
Sbjct: 488 SKINDAIKIYIEMTS-NG-----CCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFK 541

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PD+ TY SLIRG C     + A  ++ E++D G+Q +V+  N++++ LC  GK+DEA  +
Sbjct: 542 PDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCI 601

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M +    P+   YNTLMDGF   G +++A  L+ ++  NG   D+ +Y   I G C 
Sbjct: 602 YLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCS 661

Query: 316 -NKEIEGALSLYSEMLSKGIRPTVVTYN 342
            N+  EG L L +E+L+ GI PTV+T++
Sbjct: 662 CNRTPEGVL-LLNEVLATGIMPTVITWS 688



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 184/361 (50%), Gaps = 43/361 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV--------SP 70
           ++ IL   L ++   D+   ++  +   GL  D+  YN LI  FC++GR         S 
Sbjct: 301 TYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDST 360

Query: 71  GFVVLGRIL----------------------------RSCFTPDAVTFTSLIKGLCAESR 102
           GF  + +I                              SC +PD VTF +LI GLC    
Sbjct: 361 GFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASC-SPDKVTFGTLIHGLCENGY 419

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
              A  +    R  G + DVF+Y+++IN  C+ G T  A  +++ M          CKP+
Sbjct: 420 ANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDG------CKPN 473

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
           +  Y+ + +G C+   ++ A +++++M      P ++TY +LI G C A  + EA  L  
Sbjct: 474 SHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTK 533

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM+++G +P++ T+  ++  LC++ K+D A R+ + ++  G++ D  V+N L+ G C  G
Sbjct: 534 EMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAG 593

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +V+ A  +++ M+   C  ++ +Y  L++G+ +   I+ A SL++ +L  G++P +VTYN
Sbjct: 594 KVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYN 653

Query: 343 T 343
           T
Sbjct: 654 T 654



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 181/366 (49%), Gaps = 30/366 (8%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR     P   +++ L   LAK+   D  L L   + + G+  D   YN L++   + G 
Sbjct: 184 LRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGM 243

Query: 68  VSPGFVVLGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
                 V  +++R    +P+  T+  ++ GLC   R  EA  +++++ A   + D  TY 
Sbjct: 244 FEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYG 303

Query: 127 TLINGLCRTGHTIVALNLFEEMANGN------------------GEFGVVCK-------- 160
            LI+GLCR+G    A  ++ +M                      G  G   K        
Sbjct: 304 ILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFS 363

Query: 161 --PDAITYSTITDGLCKEGFVDKAKELFLKMK-DENINPDVVTYTSLIRGFCYANDWNEA 217
                 TY+ +T GL   G V +A EL  +++ D + +PD VT+ +LI G C     N A
Sbjct: 364 GIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRA 423

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +  +  + G + +V +++ ++N  CK+G+  +A+ + + M++ G +P++ VYN L++G
Sbjct: 424 FEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALING 483

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           FC   ++N A ++++ M SNGC   + +Y  LI+G CK ++ + A SL  EML +G +P 
Sbjct: 484 FCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPD 543

Query: 338 VVTYNT 343
           + TY +
Sbjct: 544 IRTYAS 549



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 172/376 (45%), Gaps = 41/376 (10%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +++ ++R   + P + ++ ++   L K   +     ++ R+ +     D  TY ILI+  
Sbjct: 250 VWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGL 309

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-----FTKLRAF- 116
           C+ G V     V   ++++    D   + SLIKG C   R  EA        F+ +R   
Sbjct: 310 CRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQIT 369

Query: 117 -----------------------------GCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
                                         C PD  T+ TLI+GLC  G+   A  + E+
Sbjct: 370 TYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILED 429

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
             N   E       D  +YS++ +  CK+G    A E++  M  +   P+   Y +LI G
Sbjct: 430 ARNSGEEL------DVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALING 483

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           FC  +  N+A  ++IEM   G  P ++T+N +++ LCK  K  EAS L + M++ G +PD
Sbjct: 484 FCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPD 543

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y +L+ G C   +V+ A  ++  +   G   DV  + ILI+G C   +++ A  +Y 
Sbjct: 544 IRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYL 603

Query: 328 EMLSKGIRPTVVTYNT 343
           EM  K   P +VTYNT
Sbjct: 604 EMKEKNCSPNLVTYNT 619



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 160/306 (52%), Gaps = 6/306 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L   L +N + +    + +   + G   D+++Y+ +IN FCK GR      V
Sbjct: 402 PDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEV 461

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    P++  + +LI G C  S+I +A  ++ ++ + GC P + TY TLI+GLC+
Sbjct: 462 YKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCK 521

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A +L +EM     E G   KPD  TY+++  GLC++  VD A  ++ ++ D  +
Sbjct: 522 AEKYQEASSLTKEML----ERGF--KPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGL 575

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             DV+ +  LI G C A   +EA C+++EM ++   PN+VT+N +M+   + G +D+A+ 
Sbjct: 576 QVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAAS 635

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   ++  G++PD   YNT + G C   R      L   + + G M  V ++ IL+    
Sbjct: 636 LWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVI 695

Query: 315 KNKEIE 320
           K   I+
Sbjct: 696 KYGPIQ 701



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 166/317 (52%), Gaps = 14/317 (4%)

Query: 34  DTVLSLFKRLNSI-GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF----TPDAV 88
           D  L+ F+ L S+ G  P + ++N L++ F +  R S        +    F     P+  
Sbjct: 100 DAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQ 159

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           T+  +++ LCA   +  A +LF+ LR  G  PD  TY+TL++GL +      AL+L +EM
Sbjct: 160 TYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEM 219

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRG 207
            N    +GV  + DA+ Y+ +  G  + G  +KA +++ ++ +D   +P++ TY  ++ G
Sbjct: 220 PN----YGV--QADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDG 273

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C    + EA  ++  MM    Q + VT+ ++++ LC++G +D A+R+   M++ G+  D
Sbjct: 274 LCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLD 333

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
            SVYN+L+ GFC  GR   A + + S   +G +R + +Y I+  G   +  +  A  L  
Sbjct: 334 VSVYNSLIKGFCEVGRTGEAWKFWDSTGFSG-IRQITTYNIMTKGLLDSGMVSEATELLK 392

Query: 328 EMLSKGI-RPTVVTYNT 343
           ++ +     P  VT+ T
Sbjct: 393 QLENDASCSPDKVTFGT 409


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 170/328 (51%), Gaps = 8/328 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S++ +     K    D   S +  +    + P++ TYN +I   CK   V     
Sbjct: 9   PPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAME 68

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL  +++S   PD +T+ S++ G C+  +  EA     K+R+ G +PDV TY +L++ LC
Sbjct: 69  VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLC 128

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A  +F+ M           KPD  TY T+  G   +G + +   L   M    
Sbjct: 129 KNGRCTEARKIFDSMTKRG------LKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNG 182

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I+P+   ++ L+  +       EA  +F +M  QG+ PN VT+  +++ LCK+G++++A 
Sbjct: 183 IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAM 242

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG-CMRDVFSYGILING 312
              E MI  G+RPD+ VYN+L+   C+  +  +A+ELF+ M   G C+  +F +  +I+ 
Sbjct: 243 LYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIF-FNSIIDS 301

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +CK   +  ++ L+  M+  G++P ++T
Sbjct: 302 HCKEGRVIESVKLFDLMVRIGVKPDIIT 329



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           C PDV +Y+T+ING  + G      + + EM +          P+ +TY++I   LCK  
Sbjct: 8   CPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKR------ISPNVVTYNSIIAALCKAQ 61

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            VDKA E+   M    + PD +TY S++ GFC +    EA     +M   GV+P+VVT+N
Sbjct: 62  TVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYN 121

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +M+ LCKNG+  EA ++ + M + G++PD + Y TL+ G+   G +     L   M  N
Sbjct: 122 SLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRN 181

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   + + + IL+  Y K +++E A+ ++S+M  +G+ P  VTY T
Sbjct: 182 GIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 227



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 144/293 (49%), Gaps = 6/293 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K +  D  + +   +   G+ PD  TYN +++ FC  G+     V 
Sbjct: 45  PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 104

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT+ SL+  LC   R  EA  +F  +   G KPD+ TY TL+ G   
Sbjct: 105 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYAT 164

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  +    L + M   NG       P+   +S +     K+  V++A  +F KM+ + +
Sbjct: 165 KGALVEMHGLLDLMVR-NG-----IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGL 218

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NP+ VTY ++I   C +    +A   F +M+D+G++P+ + +N +++ LC   K ++A  
Sbjct: 219 NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEE 278

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           L   M+  G+      +N+++D  C  GRV  + +LF  M   G   D+ + G
Sbjct: 279 LFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKPDIITLG 331



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 134/259 (51%), Gaps = 6/259 (2%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
           PD V+++++I G   E  + +  + + ++      P+V TY ++I  LC+      A+ +
Sbjct: 10  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEV 69

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
              M       GV+  PD +TY++I  G C  G   +A     KM+ + + PDVVTY SL
Sbjct: 70  LTTMVKS----GVM--PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSL 123

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           +   C      EA+ +F  M  +G++P++ T+  ++      G + E   LL+LM++ G+
Sbjct: 124 MDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 183

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            P+  V++ L+  +    +V  A  +F  M   G   +  +YG +I+  CK+  +E A+ 
Sbjct: 184 HPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAML 243

Query: 325 LYSEMLSKGIRPTVVTYNT 343
            + +M+ +G+RP  + YN+
Sbjct: 244 YFEQMIDEGLRPDSIVYNS 262



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 6/234 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F   +R     P V ++N L   L KN        +F  +   GL PD+ TY  L+  +
Sbjct: 103 VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGY 162

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +     +L  ++R+   P+   F+ L+     + ++ EA  +F+K+R  G  P+ 
Sbjct: 163 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNA 222

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY T+I+ LC++G    A+  FE+M +         +PD+I Y+++   LC     +KA
Sbjct: 223 VTYGTVIDVLCKSGRVEDAMLYFEQMIDEG------LRPDSIVYNSLIHSLCIFDKWEKA 276

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           +ELFL+M D  I    + + S+I   C      E+  LF  M+  GV+P+++T 
Sbjct: 277 EELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKPDIITL 330



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   C  DV SY  +ING+ K  +++   S Y+EML K I P VVTYN+
Sbjct: 4   DGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNS 52


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 173/339 (51%), Gaps = 9/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F++M R+H   P + +  +L   LAK +  + V  ++K++  +G+ P+++ +N+LI+  
Sbjct: 149 VFEHM-RVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHAC 207

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G V     +L  +      PD  T+ +LI   C +    EA  +  ++   G  PD+
Sbjct: 208 CKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDI 267

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY +LI G CR G    AL LF E+   NG       P+ +TY+T+ DG C+   +++A
Sbjct: 268 VTYNSLIYGFCREGRMREALRLFREI---NG-----ATPNHVTYTTLIDGYCRVNDLEEA 319

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L   M+ E ++P VVTY S++R  C      +A  L  EM ++ V+P+ VT N ++N 
Sbjct: 320 LRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINA 379

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G M  A ++ + M++ G++PD   +  L+ GFC    V+ AKE    M   G    
Sbjct: 380 YCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPS 439

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +Y  L++ Y      E  + L  E+  KG+   +  Y
Sbjct: 440 YSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVY 478



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 177/343 (51%), Gaps = 13/343 (3%)

Query: 3   IFDYMLRMHPSP---PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           + + ++R+H  P     + S+ ++F   A ++     + +F+ +   G  P L+   +L+
Sbjct: 112 VLNAVVRIHDDPDSNSQILSWLVIF--YANSRMTQDAIQVFEHMRVHGFKPHLHACTVLL 169

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           N   K    +  + V  +++R    P+   F  LI   C    + +A  L  ++ +    
Sbjct: 170 NSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIF 229

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD+FTY TLI+  C+ G    AL + + M  G    GV   PD +TY+++  G C+EG +
Sbjct: 230 PDLFTYNTLISLYCKKGMHYEALGIQDRMERG----GV--SPDIVTYNSLIYGFCREGRM 283

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            +A  LF ++      P+ VTYT+LI G+C  ND  EA  L   M  +G+ P VVT+N I
Sbjct: 284 REALRLFREIN--GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSI 341

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           + +LC+ GK+ +A+RLL  M +  V PD    NTL++ +C  G +  A ++   M   G 
Sbjct: 342 LRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGL 401

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             D F++  LI+G+CK  E++ A     EML  G  P+  TY+
Sbjct: 402 KPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYS 444



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 160/356 (44%), Gaps = 31/356 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  FN+L     K+   +    L   + S  +FPDL+TYN LI+ +CK G       +
Sbjct: 195 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+ R   +PD VT+ SLI G C E R+ EA  LF ++   G  P+  TYTTLI+G CR
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDGYCR 312

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----------------------------CKPDAIT 165
                 AL L E M       GVV                              +PD +T
Sbjct: 313 VNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVT 372

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
            +T+ +  CK G +  A ++  KM +  + PD  T+ +LI GFC  ++ + AK    EM+
Sbjct: 373 CNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEML 432

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           D G  P+  T++ +++        +   RL + + + G+  D SVY  L+   C   ++ 
Sbjct: 433 DAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIE 492

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            A+ +F  M+  G   D   Y  L   Y K  +   A  +  EM  + +  T+  Y
Sbjct: 493 SAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRLMITLKIY 548



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 149/323 (46%), Gaps = 30/323 (9%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82
           +   LAK+K + T  +L +R+                         SP   VL  ++R  
Sbjct: 81  MIHTLAKHKQFKTAQNLLERIAVRDYLS------------------SPS--VLNAVVRIH 120

Query: 83  FTPDAVT-FTSLIKGLCAESRI-MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
             PD+ +   S +    A SR+  +A  +F  +R  G KP +   T L+N L +   T +
Sbjct: 121 DDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNM 180

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
              ++++M       GVV  P+   ++ +    CK G V+KA++L  +M+   I PD+ T
Sbjct: 181 VWKVYKKMV----RVGVV--PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFT 234

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y +LI  +C      EA  +   M   GV P++VT+N ++   C+ G+M EA RL   + 
Sbjct: 235 YNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREIN 294

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             G  P+   Y TL+DG+C    +  A  L   ME  G    V +Y  ++   C+  +I+
Sbjct: 295 --GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIK 352

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A  L +EM  + + P  VT NT
Sbjct: 353 DANRLLNEMSERKVEPDNVTCNT 375


>gi|357437447|ref|XP_003588999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478047|gb|AES59250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 458

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/259 (38%), Positives = 150/259 (57%), Gaps = 12/259 (4%)

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLR-AFGCKPDVFTYTTLINGLCRTG-HTIVALNL 144
           A   T+ IKG+C    I  A     K+  A G   D ++Y TLINGLC+ G  T  AL L
Sbjct: 104 APPLTTPIKGICQTGDIQRALNFHYKVVVARGFDVDHYSYGTLINGLCKVGGDTRAALQL 163

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
             +            +PD + Y+T+ D +CK+ FV+ A +L+ +M    I+P+VVTYT+L
Sbjct: 164 LRQ----------AFEPDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTAL 213

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I GFC      EA  LF +M+ + + PNV TFN +++  CK GK++EA  +L  M++  +
Sbjct: 214 IDGFCVVGKLEEALGLFKKMISENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDL 273

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
           + D   Y++LM+G+CL   V +A+ +F +M       DV SY I+IN +CK K ++ A+ 
Sbjct: 274 KSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAERELSYDVRSYNIMINEFCKMKMVDEAIK 333

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           L+ EM  K I P VVTY+T
Sbjct: 334 LFEEMPLKQIFPDVVTYHT 352



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 172/307 (56%), Gaps = 18/307 (5%)

Query: 28  AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA 87
           A N HY  V++        G   D Y+Y  LIN  CK+G  +   +   ++LR  F PD 
Sbjct: 123 ALNFHYKVVVAR-------GFDVDHYSYGTLINGLCKVGGDTRAAL---QLLRQAFEPDV 172

Query: 88  VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           V +T++I  +C ++ + +A  L+ ++ A G  P+V TYT LI+G C  G    AL LF++
Sbjct: 173 VMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKK 232

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M + N        P+  T++ + D  CKEG +++AK +   M ++++  DVV Y+SL+ G
Sbjct: 233 MISEN------INPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNG 286

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           +C  N+  +A+ +F  M ++ +  +V ++N+++NE CK   +DEA +L E M    + PD
Sbjct: 287 YCLVNEVFKAQSIFKTMAERELSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPD 346

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y+TL+DG C +GR++ A EL   M+  G   ++ +Y  +++  CKN   +G LS   
Sbjct: 347 VVTYHTLIDGLCKSGRLSYAMELVDEMDDRGEPPNIITYCPIVDVLCKNH--DGVLSSGK 404

Query: 328 EMLSKGI 334
            + S G+
Sbjct: 405 SLPSCGL 411



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 137/260 (52%), Gaps = 11/260 (4%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           F  D  ++ +LI GLC       AA    + +AF  +PDV  YTT+I+ +C+      A 
Sbjct: 136 FDVDHYSYGTLINGLCKVGGDTRAALQLLR-QAF--EPDVVMYTTVIDNMCKDTFVNDAF 192

Query: 143 NLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
           +L+ EM A+G         P+ +TY+ + DG C  G +++A  LF KM  ENINP+V T+
Sbjct: 193 DLYYEMVASG-------ISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTF 245

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
             L+  FC      EAK +   MM++ ++ +VV ++ +MN  C   ++ +A  + + M +
Sbjct: 246 NGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAE 305

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
             +  D   YN +++ FC    V+ A +LF  M       DV +Y  LI+G CK+  +  
Sbjct: 306 RELSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLIDGLCKSGRLSY 365

Query: 322 ALSLYSEMLSKGIRPTVVTY 341
           A+ L  EM  +G  P ++TY
Sbjct: 366 AMELVDEMDDRGEPPNIITY 385



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  +   + K+   +    L+  + + G+ P++ TY  LI+ FC +G++     +
Sbjct: 170 PDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGL 229

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++     P+  TF  L+   C E +I EA  +   +     K DV  Y++L+NG C 
Sbjct: 230 FKKMISENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCL 289

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A ++F+ MA     +      D  +Y+ + +  CK   VD+A +LF +M  + I
Sbjct: 290 VNEVFKAQSIFKTMAERELSY------DVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQI 343

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            PDVVTY +LI G C +   + A  L  EM D+G  PN++T+  I++ LCKN
Sbjct: 344 FPDVVTYHTLIDGLCKSGRLSYAMELVDEMDDRGEPPNIITYCPIVDVLCKN 395



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 8/212 (3%)

Query: 4   FDYMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           FD    M  S   P V ++  L          +  L LFK++ S  + P++YT+N L++ 
Sbjct: 192 FDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFNGLVDA 251

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FCK G++     VL  ++      D V ++SL+ G C  + + +A ++F  +       D
Sbjct: 252 FCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAERELSYD 311

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V +Y  +IN  C+      A+ LFEEM            PD +TY T+ DGLCK G +  
Sbjct: 312 VRSYNIMINEFCKMKMVDEAIKLFEEMPLKQ------IFPDVVTYHTLIDGLCKSGRLSY 365

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           A EL  +M D    P+++TY  ++   C  +D
Sbjct: 366 AMELVDEMDDRGEPPNIITYCPIVDVLCKNHD 397


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 172/334 (51%), Gaps = 16/334 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + SF I+  C    ++          + S+G+ PD+  YN+++  +C +GRV    + 
Sbjct: 77  PSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIK 136

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G++ ++C  P+  T+ ++I GLC   +I  A  LFT+L      PD FTY+TL++GLC+
Sbjct: 137 FGKMGKTC-KPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQ 195

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +++ M   N +       DA  Y+ + DG CKE  VD+A E+   M     
Sbjct: 196 AERLEAAIKVYDMMLEANYD------GDAGAYNAMADGFCKERRVDEALEVLKTMIQRGC 249

Query: 195 NPDVVTYTSLIRGFC-YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            P VVTY  +I G C Y N   EA  LF +M+     PN VT+  ++  L    K+ E  
Sbjct: 250 KPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGL---SKIYEVQ 306

Query: 254 RLLEL---MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           R LEL   M + G+ PD   Y++L+  F    +++ AK +      N    DV+ Y  LI
Sbjct: 307 RCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLI 366

Query: 311 NGYCKNKE--IEGALSLYSEMLSKGIRPTVVTYN 342
           +GYC+ ++  ++ AL L+  M  + + P V+TYN
Sbjct: 367 SGYCRARKPRVDEALLLFQNMKDRRVWPNVITYN 400



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 164/341 (48%), Gaps = 8/341 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD+  +       V  +  L   L + +     +  FKR       P LY++ I+I CFC
Sbjct: 31  FDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFC 90

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            +      +  LG +      PD   +  ++KG C   R+  A   F K+    CKP+V 
Sbjct: 91  NVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKM-GKTCKPNVA 149

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY T+INGLC+ G    A++LF  + +       +  PD  TYST+  GLC+   ++ A 
Sbjct: 150 TYNTVINGLCKFGKIDWAVHLFTRLPHD------LVDPDGFTYSTLVHGLCQAERLEAAI 203

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +++  M + N + D   Y ++  GFC     +EA  +   M+ +G +P+VVT+N I+N +
Sbjct: 204 KVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGV 263

Query: 244 CK-NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           C+   +++EA RL + M+     P+A  Y T++ G      V R  ELF  M   G   D
Sbjct: 264 CQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPD 323

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++Y  LI  + K ++++ A S+  +     + P V  Y T
Sbjct: 324 GYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTT 364



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 153/322 (47%), Gaps = 44/322 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +   L K    D  + LF RL    + PD +TY+ L++  C+  R+     V
Sbjct: 146 PNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKV 205

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L + +  DA  + ++  G C E R+ EA  +   +   GCKP V TY  +ING+C+
Sbjct: 206 YDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQ 265

Query: 135 TGHTI-VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK------------------ 175
             + I  A  LF++M       G  C P+A+TY T+  GL K                  
Sbjct: 266 YKNRIEEAYRLFQQMV------GSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAG 319

Query: 176 ---EGF--------------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND--WNE 216
              +G+              +D+AK +       ++ PDV  YT+LI G+C A     +E
Sbjct: 320 LSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDE 379

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  LF  M D+ V PNV+T+N+++  LCK G+ DEA ++ + M ++   P+   +  +  
Sbjct: 380 ALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTM 439

Query: 277 GFCLTGRVNRAKELFVSMESNG 298
           G    G+ ++ + +F+ M   G
Sbjct: 440 GMIHCGKTDKFERIFMDMVYKG 461



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 8/178 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++  +   L+K       L LFK ++  GL PD Y Y+ LI  F K+ ++     
Sbjct: 286 PPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKS 345

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLC--AESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           +L    R+   PD   +T+LI G C   + R+ EA  LF  ++     P+V TY  ++ G
Sbjct: 346 ILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRG 405

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           LC+TG    A  +F+EM      F V C P+ +T+  +T G+   G  DK + +F+ M
Sbjct: 406 LCKTGRFDEAYQIFQEM------FKVKCSPNRMTFKVMTMGMIHCGKTDKFERIFMDM 457


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 167/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V S +K +        LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWSFYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L + + A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G +D A E++ +M  +  +PD +TY +LI 
Sbjct: 231 EMLDR----GLV--PNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +AK L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   D  +Y I+++ +CKN +++    L 
Sbjct: 345 DDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P V+T
Sbjct: 405 KEMQRDGHVPCVIT 418



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 154/285 (54%), Gaps = 6/285 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ EA  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M +          PD ITY+T+  GLCK+G + +AK+L  +M  + 
Sbjct: 253 KNGKLDLAMEIYKQMLSQG------FSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V++  +++ LCK G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++L  M+ +G++PD   Y  +M  FC  G V    +L   M+ +G
Sbjct: 367 KMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDG 411



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 138/252 (54%), Gaps = 6/252 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K    D    L   +++ G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P+ VTFT+LI G C   ++  A  ++ ++ + G  PD  TY TLI GLC+
Sbjct: 229 FDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCK 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L +EM+          KPD ITY+T+ DG CKEG ++ A E   +M  ENI
Sbjct: 289 KGDLXQAKDLXDEMSMKG------LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENI 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V+YT+LI G C      +A+ +  EM+  G++P+  T+ ++M+E CKNG +   S+
Sbjct: 343 RLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSK 402

Query: 255 LLELMIQIGVRP 266
           LL+ M + G  P
Sbjct: 403 LLKEMQRDGHVP 414



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 121/221 (54%), Gaps = 6/221 (2%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           ++ +  L++  C+ G   +A ++F    +G  ++G+  +P  ++++T+ +G  K G +D+
Sbjct: 136 LYFFNILMDRFCKEGEIRLAQSVF----DGITKWGL--RPSVVSFNTLMNGYIKLGDLDE 189

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
              L   M    + PDV TY+ LI G C  +  +EA  LF EM+D+G+ PN VTF  +++
Sbjct: 190 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLID 249

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CKNGK+D A  + + M+  G  PD   YNTL+ G C  G + +AK+L   M   G   
Sbjct: 250 GHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKP 309

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           D  +Y  LI+G CK  ++E A      M+ + IR   V+Y 
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYT 350



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ + D  CKEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMH 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMDEA +L + M+  G+ P+   + TL+DG C  G+++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S G   D  +Y  LI G CK  ++  A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTT 316



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 110/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +S +
Sbjct: 13  LHSYCTMIHFLCTHQMLPEAKSLIQIVVSRKGKDSASAVFATILETKGAQRSDIYVFSGL 72

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E F   ++        T   ++        +      + E+++   
Sbjct: 73  ITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFKLVWSFYKEILECRY 132

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK G++  A  + + + + G+RP    +NTLM+G+   G ++    
Sbjct: 133 PASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  +++ A  L+ EML +G+ P  VT+ T
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTT 246



 Score = 38.1 bits (87), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 33/71 (46%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K         + + + S+GL PD  TY I+++ FCK G V  G  +L  +
Sbjct: 348 SYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEM 407

Query: 79  LRSCFTPDAVT 89
            R    P  +T
Sbjct: 408 QRDGHVPCVIT 418


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 161/307 (52%), Gaps = 6/307 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L L +     G  P +  YN+LI+ +C+ G +  G ++LG +    F P  VT+ SLI  
Sbjct: 224 LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINC 283

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
           L  +  + +  +LF ++R  G  P+V  Y ++I+ LC+      A+ + ++M      F 
Sbjct: 284 LGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQM------FA 337

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
             C PD IT++T+  GLC EG V KA+    +     +NP+ ++YT LI GFC   +   
Sbjct: 338 SGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMA 397

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  L +EMM +G  P+VVTF  +++ L   GK+ EA  + E M +  V PD ++YN L+ 
Sbjct: 398 ASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 457

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C    +  AK +   M       D F Y  LI+G+ +++ +  A  ++  M  KG+RP
Sbjct: 458 GLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRP 517

Query: 337 TVVTYNT 343
            +V+ N 
Sbjct: 518 DIVSCNA 524



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 165/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++  L  CL K    + + SLF  +   GL P++  YN +I+  CK    +   V+
Sbjct: 272 PTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVI 331

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++  S   PD +TF +LI GLC E  + +A     +       P+  +YT LI+G C 
Sbjct: 332 LKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCM 391

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A +L  EM  G G       PD +T+  +  GL   G V +A  +  KM +  +
Sbjct: 392 RGELMAASDLLMEMM-GRGH-----TPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 445

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV  Y  LI G C  +    AK +  EM+++ VQP+   +  +++   ++  + +A +
Sbjct: 446 FPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARK 505

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E M   GVRPD    N ++ G+C  G ++ A     +M   GC+ D F+Y  +I+GY 
Sbjct: 506 IFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYA 565

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   + GAL    +M+ +  +P VVTY++
Sbjct: 566 KQGNLNGALRWLCDMIKRKCKPNVVTYSS 594



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 153/355 (43%), Gaps = 25/355 (7%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + M R H   P V +F  L   L         L + +++    +FPD+  YN+LI+  
Sbjct: 402 LMEMMGRGHT--PDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGL 459

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK   +     +L  +L     PD   + +LI G      + +A  +F  +   G +PD+
Sbjct: 460 CKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDI 519

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +   +I G C+ G    A+     M        V C PD  TY+T+  G  K+G ++ A
Sbjct: 520 VSCNAMIKGYCQFGMMSEAILCMSNMRK------VGCIPDEFTYTTVISGYAKQGNLNGA 573

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
                 M      P+VVTY+SLI G+C   D + A+ LF  M  + + PNVVT+ +++  
Sbjct: 574 LRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGS 633

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF------------CLTGRVNRAKEL 290
           L K  K+  A    E M+     P+    + L++G             C T  V+    L
Sbjct: 634 LFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDAL 693

Query: 291 FVSMES----NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            V  +      G  R+  +Y  +I   C++  +  AL   + M  KG  P  +T+
Sbjct: 694 LVVFKKLVFDIGDPRNS-AYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITF 747



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 138/349 (39%), Gaps = 56/349 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N+L   L K        ++ + +    + PD + Y  LI+ F +   +     +
Sbjct: 447 PDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKI 506

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD V+  ++IKG C    + EA    + +R  GC PD FTYTT+I+G  +
Sbjct: 507 FEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAK 566

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL    +M          CKP+ +TYS++ +G CK G  D A+ LF  M+ E +
Sbjct: 567 QGNLNGALRWLCDMIKRK------CKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEAL 620

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT------------------- 235
           +P+VVTYT LI      +    A   F  M+     PN VT                   
Sbjct: 621 SPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSI 680

Query: 236 -------------------------------FNVIMNELCKNGKMDEASRLLELMIQIGV 264
                                          +N I+  LC++  + EA      M + G 
Sbjct: 681 CCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGY 740

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            P+   + +L+ GFC  G+    + +  +         +F Y  L + Y
Sbjct: 741 VPNPITFLSLLYGFCSVGKSMNWRTILPNEFQQEEFEIIFRYKFLFDQY 789



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 7/259 (2%)

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLR-AFGCKPDVFTYTTLINGLCRTGHTIVAL 142
            P      +L+        + +A  +  +LR  +G  P+V     L+  L        A 
Sbjct: 130 APTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDDAR 189

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            L++EM       G     D  +   +  GLC EG V++  +L          P VV Y 
Sbjct: 190 KLYDEM------LGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYN 243

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
            LI G+C   D      L  EM  +G  P +VT+  ++N L K G +++   L   M + 
Sbjct: 244 VLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKR 303

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G+ P+  +YN+++D  C      +A  +   M ++GC  D+ ++  LI G C    +  A
Sbjct: 304 GLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKA 363

Query: 323 LSLYSEMLSKGIRPTVVTY 341
                E + + + P  ++Y
Sbjct: 364 EHFLREAIRRELNPNQLSY 382



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 88/168 (52%), Gaps = 1/168 (0%)

Query: 177 GFVDKAKELFLKMKDENIN-PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           G + KA ++  +++++  + P+V     L++       W++A+ L+ EM+ +    +  +
Sbjct: 147 GMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYS 206

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
             V++  LC  G+++E  +L+E     G  P    YN L+DG+C  G + R   L   ME
Sbjct: 207 TCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEME 266

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + G +  + +YG LIN   K  ++E   SL+ EM  +G+ P V  YN+
Sbjct: 267 AKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNS 314



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 77/171 (45%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           L ++   D A++L+ +M  E+   D  +   L+RG C      E   L       G  P+
Sbjct: 179 LVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPH 238

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           VV +NV+++  C+ G M     LL  M   G  P    Y +L++     G + +   LF+
Sbjct: 239 VVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFL 298

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M   G   +V  Y  +I+  CK      A+ +  +M + G  P ++T+NT
Sbjct: 299 EMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNT 349


>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
          Length = 800

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 161/307 (52%), Gaps = 6/307 (1%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           L L +     G  P +  YN+LI+ +C+ G +  G ++LG +    F P  VT+ SLI  
Sbjct: 434 LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINC 493

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
           L  +  + +  +LF ++R  G  P+V  Y ++I+ LC+      A+ + ++M      F 
Sbjct: 494 LGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQM------FA 547

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
             C PD IT++T+  GLC EG V KA+    +     +NP+ ++YT LI GFC   +   
Sbjct: 548 SGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMA 607

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  L +EMM +G  P+VVTF  +++ L   GK+ EA  + E M +  V PD ++YN L+ 
Sbjct: 608 ASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 667

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G C    +  AK +   M       D F Y  LI+G+ +++ +  A  ++  M  KG+RP
Sbjct: 668 GLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRP 727

Query: 337 TVVTYNT 343
            +V+ N 
Sbjct: 728 DIVSCNA 734



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 147/301 (48%), Gaps = 6/301 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N+L     +       L L   + + G  P L TY  LINC  K G +     +
Sbjct: 447 PHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSL 506

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +   +P+   + S+I  LC      +A  +  ++ A GC PD+ T+ TLI GLC 
Sbjct: 507 FLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCH 566

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            GH   A +   E             P+ ++Y+ +  G C  G +  A +L ++M     
Sbjct: 567 EGHVRKAEHFLREAIRRE------LNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGH 620

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVVT+ +LI G   A   +EA  +  +M ++ V P+V  +NV+++ LCK   +  A  
Sbjct: 621 TPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKN 680

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +LE M++  V+PD  VY TL+DGF  +  +  A+++F  ME  G   D+ S   +I GYC
Sbjct: 681 ILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYC 740

Query: 315 K 315
           +
Sbjct: 741 Q 741



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 6/331 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V   N L   L + + +D    L+  +       D Y+  +L+   C  GRV  G 
Sbjct: 375 SLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGL 434

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            ++     +   P  V +  LI G C    +     L  ++ A G  P + TY +LIN L
Sbjct: 435 KLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCL 494

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            + G      +LF EM            P+   Y+++ D LCK     +A  +  +M   
Sbjct: 495 GKKGDLEKIGSLFLEMRKRG------LSPNVQIYNSVIDALCKCWSATQAMVILKQMFAS 548

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
             +PD++T+ +LI G C+     +A+    E + + + PN +++  +++  C  G++  A
Sbjct: 549 GCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAA 608

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           S LL  M+  G  PD   +  L+ G  + G+V+ A  +   M       DV  Y +LI+G
Sbjct: 609 SDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISG 668

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            CK   +  A ++  EML K ++P    Y T
Sbjct: 669 LCKKHMLPAAKNILEEMLEKNVQPDEFVYAT 699



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 6/238 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L K       + + K++ + G  PD+ T+N LI   C  G V      
Sbjct: 517 PNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHF 576

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   +R    P+ +++T LI G C    +M A+ L  ++   G  PDV T+  LI+GL  
Sbjct: 577 LREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVV 636

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL + E+M            PD   Y+ +  GLCK+  +  AK +  +M ++N+
Sbjct: 637 AGKVSEALIVREKMTERQ------VFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNV 690

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            PD   Y +LI GF  + +  +A+ +F  M  +GV+P++V+ N ++   C+ G M EA
Sbjct: 691 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEA 748



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 6/227 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L   L    H        +      L P+  +Y  LI+ FC  G +     +
Sbjct: 552 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDL 611

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++    TPD VTF +LI GL    ++ EA  +  K+      PDV  Y  LI+GLC+
Sbjct: 612 LMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 671

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A N+ EEM   N       +PD   Y+T+ DG  +   +  A+++F  M+ + +
Sbjct: 672 KHMLPAAKNILEEMLEKN------VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGV 725

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
            PD+V+  ++I+G+C     +EA      M  Q       TF V  N
Sbjct: 726 RPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKQLEVERAGTFIVPSN 772



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLE-LMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           G  P       ++      G + +A+ + E L  Q G  P+ +  N L+       R + 
Sbjct: 338 GAAPTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDD 397

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           A++L+  M       D +S  +L+ G C    +E  L L       G  P VV YN
Sbjct: 398 ARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYN 453


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 173/355 (48%), Gaps = 38/355 (10%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L   LA+    D +  L+  +    +  D+YT+N++IN +CKMG V      + +++
Sbjct: 160 YNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMI 219

Query: 80  RSCFTPD-------------------------------AVTFTSLIKGLCAESRIMEAAA 108
           ++  +PD                                V++  LI GLC   RI EA +
Sbjct: 220 QAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVS 279

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           LF +++   C P+V+TYT LI GLCR  +   A+ L +EM   N        PD ITY++
Sbjct: 280 LFVRMKDDCCYPNVYTYTALIKGLCRK-NVHKAMGLLDEMLERN------LVPDLITYNS 332

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +  G C+ G +D A  L   MK+  + PD  TY   I   C +N   EA+ LF  + ++G
Sbjct: 333 LIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEG 392

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           V  NV+ ++V+++  CK GK+DEA  L E M+     P+A  +N L+ G C  G +  A 
Sbjct: 393 VSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEAL 452

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LF  M   G    V+++ ILI    K  + + A     +M+S G +P   TYN 
Sbjct: 453 SLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNA 507



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 161/323 (49%), Gaps = 7/323 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+N L   L +    D  +SLF R+     +P++YTY  LI   C+   V     +L  +
Sbjct: 260 SYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR-KNVHKAMGLLDEM 318

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L     PD +T+ SLI G C    +  A  L + ++  G  PD  TY   I+ LC++   
Sbjct: 319 LERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRV 378

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LF+ +     E GV    + I YS + DG CK G VD+A  LF KM  +N +P+ 
Sbjct: 379 EEARRLFDSLT----EEGV--SANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNA 432

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            T+ +LI G C A +  EA  LF +M+  G++P V TFN+++  + K G  D+A + L+ 
Sbjct: 433 YTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQK 492

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+  G +P A  YN  ++ +C  G+V  A+++ V M+  G   D F+Y  LI  Y K   
Sbjct: 493 MMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGL 552

Query: 319 IEGALSLYSEMLSKGIRPTVVTY 341
              A  +   M      P+  T+
Sbjct: 553 TYSAFDVLKSMFDADCEPSHHTF 575



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 153/292 (52%), Gaps = 11/292 (3%)

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
           L  YN L+    + G V     +   +L    + D  TF  +I   C    + EA     
Sbjct: 157 LKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMC 216

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
           K+   G  PD FT T+ I G CR+     A  +FEEM N N           ++Y+ +  
Sbjct: 217 KMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRN----------EVSYNQLIH 266

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           GLC+ G +D+A  LF++MKD+   P+V TYT+LI+G C  N  ++A  L  EM+++ + P
Sbjct: 267 GLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVP 325

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           +++T+N ++   C+ G +D A RLL LM + G+ PD   Y   +D  C + RV  A+ LF
Sbjct: 326 DLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLF 385

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            S+   G   +V  Y +LI+GYCK  +++ A  L+ +MLSK   P   T+N 
Sbjct: 386 DSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNA 437



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 170/337 (50%), Gaps = 12/337 (3%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M++   SP    S + + G   ++K  D+   +F+ + +     +  +YN LI+  C+ G
Sbjct: 218 MIQAGLSPDYFTSTSFILG-YCRSKDVDSAFRVFEEMPN----RNEVSYNQLIHGLCEAG 272

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R+     +  R+   C  P+  T+T+LIKGLC ++ + +A  L  ++      PD+ TY 
Sbjct: 273 RIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYN 331

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           +LI G CR GH   A  L   M     E G+V  PD  TY    D LCK   V++A+ LF
Sbjct: 332 SLIAGQCRAGHLDSAYRLLSLMK----ERGLV--PDQRTYGCFIDFLCKSNRVEEARRLF 385

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             + +E ++ +V+ Y+ LI G+C     +EA CLF +M+ +   PN  TFN +++ LC  
Sbjct: 386 DSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSA 445

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G + EA  L + M+++G++P    +N L+      G  + A +    M S+G      +Y
Sbjct: 446 GNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTY 505

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              I  YC   +++ A  +  +M  +G+ P   TY +
Sbjct: 506 NAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTS 542



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 160/370 (43%), Gaps = 36/370 (9%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C+F+ ML  + SP    +FN L   L    +    LSLF ++  +GL P +YT+NILI  
Sbjct: 418 CLFEKMLSKNCSPNAY-TFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGR 476

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
             K G        L +++ S   P A T+ + I+  C+  ++ EA  +  +++  G  PD
Sbjct: 477 MLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPD 536

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV-- 179
            FTYT+LI    + G T  A ++ + M      F   C+P   T+ ++   L  + +V  
Sbjct: 537 DFTYTSLIKAYGKLGLTYSAFDVLKSM------FDADCEPSHHTFLSLIKQLFDKRYVVE 590

Query: 180 ---------------------------DKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                                      D   ELF +M+     PD   Y  LI G C   
Sbjct: 591 KSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVE 650

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           +   A  L  +M  +G+ P+ + FN +++  CK  K  EA+ ++E MI  G  P      
Sbjct: 651 NLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCK 710

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           TL+ G    G   R   +F  +   G   D  ++ ILI+G  K   +E    L+ EM   
Sbjct: 711 TLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKN 770

Query: 333 GIRPTVVTYN 342
           G   +  TY+
Sbjct: 771 GCNFSPRTYS 780



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 115/334 (34%), Gaps = 94/334 (28%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M++M   P  V +FNIL G + K   +D      +++ S G  P   TYN  I  +
Sbjct: 454 LFDQMVKMGLKPT-VYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVY 512

Query: 63  CKMGRVS-----------------------------------PGFVVLGRILRSCFTPDA 87
           C  G+V                                      F VL  +  +   P  
Sbjct: 513 CSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSH 572

Query: 88  VTFTSLIKGLCAESRIMEAAA-----------------------------LFTKLRAFGC 118
            TF SLIK L  +  ++E +                              LF ++   GC
Sbjct: 573 HTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGC 632

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANG---------NGEFGVVCK--------- 160
            PD   Y  LI+G+C+  +  +AL L ++M            N      CK         
Sbjct: 633 TPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAAN 692

Query: 161 -----------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
                      P      T+  GL +EG  ++   +F K++    N D + +  LI G  
Sbjct: 693 IVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGML 752

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
                 E   LF EM   G   +  T++++  +L
Sbjct: 753 KQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQKL 786


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 175/366 (47%), Gaps = 49/366 (13%)

Query: 22  ILFGCLAKNKHY---DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           I+FG L ++        V+ L  +L   G+FPD +    L+   C   +    + VL  +
Sbjct: 213 IVFGELVRSGRSFPDGEVVGLVAKLGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCV 272

Query: 79  LR--------SC---------------------------FTPDAVTFTSLIKGLCAESRI 103
           +R        SC                             P  VTF  L+  LC   RI
Sbjct: 273 MRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRI 332

Query: 104 MEAAALFTKLRA------FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
            EA  +F +LR        G +PDV  + TLI+GLC+ G     L+L EEM  GN     
Sbjct: 333 DEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGN----- 387

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           + +P+ +TY+ + DG  K G  D+A ELF +M +E + P+V+T  +L+ G C     + A
Sbjct: 388 INRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRA 447

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
              F EM  +G++ N  T+  +++  C    ++ A +  E M+  G  PDA VY +L+ G
Sbjct: 448 VEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISG 507

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
            C+ GR+N A  +   ++  G   D   Y +LI+G+CK K++E    L +EM   G++P 
Sbjct: 508 LCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPD 567

Query: 338 VVTYNT 343
            +TYNT
Sbjct: 568 TITYNT 573



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 165/332 (49%), Gaps = 13/332 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
             S N L   L + +    +  L   +    + P + T+ IL+N  CK  R+     V  
Sbjct: 281 AASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFD 340

Query: 77  RILRSCFT------PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPDVFTYTTLI 129
           R+     +      PD V F +LI GLC   +  +  +L  +++     +P+  TY  LI
Sbjct: 341 RLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLI 400

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           +G  + G+   A  LF +M     E GV  +P+ IT +T+ DGLCK G V +A E F +M
Sbjct: 401 DGFFKAGNFDRAHELFRQM----NEEGV--QPNVITLNTLVDGLCKHGRVHRAVEFFNEM 454

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           K + +  +  TYT+LI  FC  N+ N A   F EM+  G  P+ V +  +++ LC  G+M
Sbjct: 455 KGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRM 514

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           ++AS ++  +   G   D S YN L+ GFC   ++ R  EL   ME  G   D  +Y  L
Sbjct: 515 NDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTL 574

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           I+   K  +   A  +  +M+ +G+RP+VVTY
Sbjct: 575 ISYLGKTGDFATASKVMEKMIKEGLRPSVVTY 606



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 172/372 (46%), Gaps = 49/372 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL------NSIGLFPDLYTYNILINCFCKMGRV 68
           P V +F IL   L K +  D  L +F RL      N +G+ PD+  +N LI+  CK+G+ 
Sbjct: 314 PSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKE 373

Query: 69  SPGFVVL-----GRILR------SCF-------------------------TPDAVTFTS 92
             G  +L     G I R      +C                           P+ +T  +
Sbjct: 374 EDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNT 433

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           L+ GLC   R+  A   F +++  G K +  TYT LI+  C   +   A+  FEEM +  
Sbjct: 434 LVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSG 493

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                 C PDA+ Y ++  GLC  G ++ A  +  K+K    + D   Y  LI GFC   
Sbjct: 494 ------CSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKK 547

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
                  L  EM + GV+P+ +T+N +++ L K G    AS+++E MI+ G+RP    Y 
Sbjct: 548 KLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYG 607

Query: 273 TLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
            ++  +C    V+   ++F  M  ++    +   Y ILI+  C+N +++ A+SL  +M  
Sbjct: 608 AIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKV 667

Query: 332 KGIRPTVVTYNT 343
           K +RP   TYN 
Sbjct: 668 KRVRPNTTTYNA 679



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 146/307 (47%), Gaps = 7/307 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N L   L K+      +  F  +   GL  +  TY  LI+ FC +  ++     
Sbjct: 426 PNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQC 485

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L S  +PDAV + SLI GLC   R+ +A+ + +KL+  G   D   Y  LI+G C+
Sbjct: 486 FEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCK 545

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                    L  EM     E GV  KPD ITY+T+   L K G    A ++  KM  E +
Sbjct: 546 KKKLERVYELLTEME----ETGV--KPDTITYNTLISYLGKTGDFATASKVMEKMIKEGL 599

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            P VVTY ++I  +C   + +E   +F EM     V PN V +N++++ LC+N  +D A 
Sbjct: 600 RPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAI 659

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L+E M    VRP+ + YN ++ G      +++A EL   M    C  D  +  +L    
Sbjct: 660 SLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWL 719

Query: 314 CKNKEIE 320
               EIE
Sbjct: 720 SAVGEIE 726



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 152/327 (46%), Gaps = 7/327 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K  ++D    LF+++N  G+ P++ T N L++  CK GRV      
Sbjct: 391 PNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEF 450

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       +A T+T+LI   C  + I  A   F ++ + GC PD   Y +LI+GLC 
Sbjct: 451 FNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCI 510

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  +  ++          C      Y+ +  G CK+  +++  EL  +M++  +
Sbjct: 511 AGRMNDASVVVSKLKLAGFSLDRSC------YNVLISGFCKKKKLERVYELLTEMEETGV 564

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +TY +LI       D+  A  +  +M+ +G++P+VVT+  I++  C    +DE  +
Sbjct: 565 KPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMK 624

Query: 255 LL-ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +  E+     V P+  +YN L+D  C    V+RA  L   M+      +  +Y  ++ G 
Sbjct: 625 IFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGV 684

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
              K +  A  L   M+ +  RP  +T
Sbjct: 685 RDKKMLHKAFELMDRMVEEACRPDYIT 711



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 7/180 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L K   + T   + +++   GL P + TY  +I+ +C    V  G  +
Sbjct: 566 PDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKI 625

Query: 75  LGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
            G +   S   P+ V +  LI  LC  + +  A +L   ++    +P+  TY  ++ G+ 
Sbjct: 626 FGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVR 685

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                  A  L + M          C+PD IT   +T+ L   G ++K K      +D +
Sbjct: 686 DKKMLHKAFELMDRMVEE------ACRPDYITMEVLTEWLSAVGEIEKLKHFVEGYQDSS 739



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 42/101 (41%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF  M      PP    +NIL   L +N   D  +SL + +    + P+  TYN ++   
Sbjct: 625 IFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGV 684

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103
                +   F ++ R++     PD +T   L + L A   I
Sbjct: 685 RDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEI 725


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 169/326 (51%), Gaps = 14/326 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKH-YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +R    PP V S NIL   L KN+   ++   LF+ + + G  PD YTY  LIN  CK+G
Sbjct: 146 MREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLG 205

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           ++S    +L  +     +P  V++TSLI GLC  + + EA  L  ++   G +P+VFTY+
Sbjct: 206 KISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYS 265

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           +L++GLC++GH+  A+ L E M            P+ +TYST+ +GLCKEG   +A E+ 
Sbjct: 266 SLMDGLCKSGHSSQAMELLEVMVRRR------LLPNMVTYSTLINGLCKEGKHREAVEIL 319

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF-------NVI 239
            +M+ + + PD   Y  +I G C A ++ EA     EM   G+ PN  ++       N++
Sbjct: 320 DRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMV 379

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  LC N     A +L   M   G+  +   ++ L+  FC  G +N+A  +   M  +GC
Sbjct: 380 VQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGC 439

Query: 300 MRDVFSYGILINGYCKNKEIEGALSL 325
           + D   + +L+ G    K++     L
Sbjct: 440 IPDEGMWNVLMCGLWDRKKVRETTEL 465



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 142/258 (55%), Gaps = 7/258 (2%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI-VALN 143
           P   ++ ++   L  E+ +  A   + ++R  G  P V +   LI  LC+   T+  A  
Sbjct: 118 PTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFR 177

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           LF EM N        C+PD+ TY T+ +GLCK G + +AKEL  +M+++ ++P VV+YTS
Sbjct: 178 LFREMPNRG------CQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTS 231

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           LI G C +N+ +EA  L  EM+  G++PNV T++ +M+ LCK+G   +A  LLE+M++  
Sbjct: 232 LIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRR 291

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           + P+   Y+TL++G C  G+   A E+   M   G   D   YG +I+G C     + A 
Sbjct: 292 LLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAA 351

Query: 324 SLYSEMLSKGIRPTVVTY 341
           +   EM   GI P   ++
Sbjct: 352 NFIDEMALGGISPNRASW 369



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 166/338 (49%), Gaps = 18/338 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  +F  L +  H    +  +K +   G+ P + + NILI   CK          
Sbjct: 118 PTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFR 177

Query: 75  LGRIL--RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           L R +  R C  PD+ T+ +LI GLC   +I +A  L  ++   G  P V +YT+LI+GL
Sbjct: 178 LFREMPNRGC-QPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGL 236

Query: 133 CRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           C++ +   A+ L EEM  NG        +P+  TYS++ DGLCK G   +A EL   M  
Sbjct: 237 CQSNNLDEAIELLEEMIING-------IEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVR 289

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             + P++VTY++LI G C      EA  +   M  QG++P+   +  I++ LC      E
Sbjct: 290 RRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQE 349

Query: 252 ASRLLELMIQIGVRPDAS-------VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           A+  ++ M   G+ P+ +       ++N ++ G C      RA +L++SM + G   ++ 
Sbjct: 350 AANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIG 409

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  L+  +CK  ++  A  +  EM+  G  P    +N
Sbjct: 410 TFDCLVKCFCKRGDLNKAARILEEMILDGCIPDEGMWN 447



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 149/298 (50%), Gaps = 7/298 (2%)

Query: 45  SIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104
           S G   D  T+  +I+    + +  P   +L R+ +         F ++ +G     R +
Sbjct: 43  SNGFRHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPL 102

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           +A  +F K+  F  KP   +Y T+ + L    H   A+  ++EM     E G+   P  +
Sbjct: 103 DAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMR----EKGI--PPTVV 156

Query: 165 TYSTITDGLCK-EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           + + +   LCK E  V+ A  LF +M +    PD  TY +LI G C     ++AK L  E
Sbjct: 157 SLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDE 216

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M ++G+ P+VV++  +++ LC++  +DEA  LLE MI  G+ P+   Y++LMDG C +G 
Sbjct: 217 MEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGH 276

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++A EL   M     + ++ +Y  LING CK  +   A+ +   M  +G++P    Y
Sbjct: 277 SSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMY 334



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 136/262 (51%), Gaps = 7/262 (2%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           F  D  TF ++I  L + ++   A  +  +++   C+     + T+  G  R    + A+
Sbjct: 46  FRHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAI 105

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            +F +M +    F V  KP   +Y T+ D L +E  V +A   + +M+++ I P VV+  
Sbjct: 106 RVFHKMED----FQV--KPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLN 159

Query: 203 SLIRGFCYANDWNEAKC-LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            LI+  C   +  E+   LF EM ++G QP+  T+  ++N LCK GK+ +A  LL+ M +
Sbjct: 160 ILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEE 219

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G+ P    Y +L+ G C +  ++ A EL   M  NG   +VF+Y  L++G CK+     
Sbjct: 220 KGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQ 279

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A+ L   M+ + + P +VTY+T
Sbjct: 280 AMELLEVMVRRRLLPNMVTYST 301



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 67/188 (35%), Gaps = 41/188 (21%)

Query: 196 PDVVTYTSLIRGFCYAN-DWNEAKCLF---IEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           P  +T  SL+     A  D N+   +F    E    G + +  TF  +++ L    +   
Sbjct: 10  PKQIT-NSLVEQLIKAEKDINKTLVMFDSATEEYSNGFRHDHNTFGAMIHRLVSVNQFRP 68

Query: 252 ASRLLELMIQ-----------------------------------IGVRPDASVYNTLMD 276
           A  +LE M Q                                     V+P    Y T+ D
Sbjct: 69  AEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFD 128

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE-IEGALSLYSEMLSKGIR 335
                  V RA   +  M   G    V S  ILI   CKN+E +E A  L+ EM ++G +
Sbjct: 129 ILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQ 188

Query: 336 PTVVTYNT 343
           P   TY T
Sbjct: 189 PDSYTYGT 196


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 174/341 (51%), Gaps = 6/341 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R    P    SF  L     +    + V +L   +   G   D  T  +++   
Sbjct: 168 VFDGMTRAGVCPDER-SFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSL 226

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR         R+L +   P+ V +T+ I GLC    + +A  +  ++   G KP+V
Sbjct: 227 CEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNV 286

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +T+TTLI+GLC+ G T  A  LF ++   +       KP+  TY+ +  G C+EG + +A
Sbjct: 287 YTHTTLIDGLCKIGWTERAFRLFLKLIKSSSY-----KPNVHTYTVMIGGYCREGKLARA 341

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + L ++M ++ + P+  TYT+LI G C    ++ A  L  +M  +G  PN+ T+N +++ 
Sbjct: 342 EMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDG 401

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK GK+ EA ++L +    G++ D   Y  L+   C  G +  A +LF  M  NGC  D
Sbjct: 402 FCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPD 461

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y  LI+ YC+ +++E +   + + L  G+ PT  TY +
Sbjct: 462 IEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTS 502



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 168/332 (50%), Gaps = 7/332 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           +PP V ++      L K ++      + + +   GL P++YT+  LI+  CK+G     F
Sbjct: 247 TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAF 306

Query: 73  VVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
            +  ++++S  + P+  T+T +I G C E ++  A  L  ++   G KP+  TYTTLI G
Sbjct: 307 RLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGG 366

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+ G    A  L  +M     + G +  P+  TY+ + DG CK+G + +A ++      
Sbjct: 367 HCKGGSFDRAFELMNKMK----QEGFL--PNIYTYNAVIDGFCKKGKIQEAYKVLRMATS 420

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + +  D +TYT LI   C       A  LF  M++ G  P++  +  +++  C+  +M+E
Sbjct: 421 QGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEE 480

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           + +  +  + IG+ P    Y +++ G+C  GR   A  +F  M  NGC  D  +YG LI+
Sbjct: 481 SQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALIS 540

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G CK   +E A +LY  ML K + P  VT  T
Sbjct: 541 GLCKESRLEEAKALYEGMLDKRLVPCEVTRVT 572



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 132/279 (47%), Gaps = 6/279 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  +++     P V ++ ++ G   +         L  R+   GL P+  TY  LI 
Sbjct: 306 FRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIG 365

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G     F ++ ++ +  F P+  T+ ++I G C + +I EA  +     + G K 
Sbjct: 366 GHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKF 425

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT LI   C+ GH   AL+LF+ M   NG     C PD   Y+++    C++  ++
Sbjct: 426 DKITYTILITEHCKQGHITYALDLFDRMVE-NG-----CCPDIEAYTSLISTYCQQRQME 479

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           ++++ F K     + P   TYTS+I G+C       A  +F  M+  G   + +T+  ++
Sbjct: 480 ESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALI 539

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           + LCK  +++EA  L E M+   + P      TL   +C
Sbjct: 540 SGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYC 578



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 138/320 (43%), Gaps = 10/320 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L G   K   +D    L  ++   G  P++YTYN +I+ FCK G++   + V
Sbjct: 355 PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKV 414

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L          D +T+T LI   C +  I  A  LF ++   GC PD+  YT+LI+  C+
Sbjct: 415 LRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQ 474

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 +   F++        G++  P   TY+++  G CK G    A  +F +M     
Sbjct: 475 QRQMEESQKFFDKCLM----IGLL--PTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGC 528

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY +LI G C  +   EAK L+  M+D+ + P  VT   +  E C+  K   A  
Sbjct: 529 FADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVS 588

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+   ++  R      + ++      G V+ A      +       D  +Y   IN   
Sbjct: 589 VLD---RLDKRQQVHTVDVVVRKLSALGDVDAASLFLKKVLDEDYAVDHATYTGFINSCY 645

Query: 315 KNKEIEGALSLYSEMLSKGI 334
           +N     A S  SE  SK I
Sbjct: 646 ENNRYALA-SEMSEKFSKKI 664



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%)

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G + +A ++ L+M+   +   V T   ++R       +  A+ +F  M   GV P+  +F
Sbjct: 125 GRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSF 184

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             ++   C+ GK++E   LL  M + G   D +    ++   C  GR     E F  M  
Sbjct: 185 RALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLE 244

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            G   +V +Y   I+G CK + ++ A  +  EM+ +G++P V T+ T
Sbjct: 245 TGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTT 291



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 107/285 (37%), Gaps = 54/285 (18%)

Query: 113 LRAFGCKPDVFT----YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
            R    +PD+      Y T        G   +A  +   M    GE G + +   +    
Sbjct: 78  FRRLASRPDLRRLMRLYVTAATAFVARGSLPMAHEVMRGMVAAFGEAGRLPEAADMVLEM 137

Query: 169 ITDGL--CKE------------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
            + GL  C E            G    A+++F  M    + PD  ++ +L+   C     
Sbjct: 138 RSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKV 197

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS--------------------- 253
            E   L   M   G   +  T  V++  LC+ G+  + S                     
Sbjct: 198 EEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAW 257

Query: 254 --------------RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNG 298
                          +LE M+  G++P+   + TL+DG C  G   RA  LF+ + +S+ 
Sbjct: 258 IDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSS 317

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +V +Y ++I GYC+  ++  A  L   M+ +G++P   TY T
Sbjct: 318 YKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTT 362


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 166/314 (52%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +          P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN------XLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A +  + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYMPSVVT 418



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++      P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G M  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 100/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +   ++ P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+   + P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+   K G++  A  + + + +  +RP    +NTLM+G+ 
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML   + P  V
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 168/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYVPSVVT 418



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C       A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G +  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 130/254 (51%), Gaps = 8/254 (3%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM- 148
           F  L+     E  I  A ++F  +  +G +P V ++ TL+NG  + G       L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQ 198

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           A+G        +PD  TYS + +GLCKE  +D A ELF +M D  + P+ VT+T+LI G 
Sbjct: 199 ASG-------VQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGH 251

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L + M   G++PD 
Sbjct: 252 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDK 311

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y TL+DG C  G +  A E    M       D  +Y  LI+G C+      A  +  E
Sbjct: 312 ITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 371

Query: 329 MLSKGIRPTVVTYN 342
           MLS G++P + TY 
Sbjct: 372 MLSVGLKPEIGTYT 385



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 100/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTT 316



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVCK------PDAITYSTITD 171
           +Y T+I+ LC       A  L + + +  G+      F  + +       D   +S +  
Sbjct: 15  SYCTMIHFLCTHQMIXEAKTLIQIVVSRKGKGSASAVFAAJLETKGTQISDIYVFSGLIT 74

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   K+        T   +J        +      + E ++ G   
Sbjct: 75  AYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWGFYEESLECGYPA 134

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+   K G++  A  + + + + G+RP    +NTLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  VT+ T
Sbjct: 195 NXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTT 246


>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Brachypodium distachyon]
          Length = 968

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 185/389 (47%), Gaps = 60/389 (15%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V ++N +     K   +   + + + +   G+  D+YTYNI+I+  CKM R +  +
Sbjct: 255 SLPNVITYNTILHWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAY 314

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           ++L R+      PD  T+ +LIKG   ES++M A  +F ++   G KP + TYTTLI+G 
Sbjct: 315 LLLKRMRGDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGY 374

Query: 133 CRTGHTIVALNLFEEMA---------------NG--NGEFGVV-------CKPDAITYST 168
           CR G    AL +  EM                NG  +  F V        C PD  TY  
Sbjct: 375 CRNGTIDEALRVLYEMQVAGVKPSEVTYSAMLNGSVHEAFSVYDNMEKYGCSPDVYTYRN 434

Query: 169 ITDGLCKEGFVDKAKE-----------------------------------LFLKMKDEN 193
           +  GLCK G + +AKE                                   L  KM   N
Sbjct: 435 LLRGLCKGGHLVQAKEFMSCIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTIN 494

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD+ TYT L+ GFC       A  L   M+++G+ P++VT+  ++  L K G++  AS
Sbjct: 495 FIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAAS 554

Query: 254 RLL-ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            L  E++ + G+  D   YN++M+G+   G++++ +     M  N    +  SY IL++G
Sbjct: 555 YLFQEIICKEGMYADCIAYNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPNPASYNILMHG 614

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + K   +  ++ LY +M+ KGI+PT VTY
Sbjct: 615 HIKKGHLSRSIYLYKDMVRKGIKPTNVTY 643



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 7/323 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +++ G L   K +   ++++  +N   ++P+  +YNIL++   K G +S    +   ++R
Sbjct: 575 SMMNGYLKAGKLHKVEMTIYD-MNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVR 633

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               P  VT+  LI GL     I  A     K+   G  PD  ++  LIN          
Sbjct: 634 KGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSD 693

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL LF  M        +   P + TYS + +GL ++ ++  + ++   M +  + P    
Sbjct: 694 ALQLFNCMK------WLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTH 747

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y +LI   C   D N A  L  EM   G+ P  V  + I+  L K GK++E   +   +I
Sbjct: 748 YIALINAKCRFGDINGAFRLKEEMTALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCSII 807

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + G+ P  + + TLM G C   +++ A  L   MES G   DV +Y +LI G CK + + 
Sbjct: 808 RAGMVPTIATFTTLMHGLCKEAKISDALHLKSLMESCGLKIDVVTYNVLITGLCKIQCVS 867

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            AL LY EM SKG+RP V TY T
Sbjct: 868 DALELYEEMKSKGLRPNVTTYTT 890



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 160/331 (48%), Gaps = 9/331 (2%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           PS     + N L   +  +   D  L L +++ +I   PD++TY IL++ FC+ G++ P 
Sbjct: 459 PSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPA 518

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR-AFGCKPDVFTYTTLIN 130
            ++L  +L     PD VT+T L+KGL  E ++  A+ LF ++    G   D   Y +++N
Sbjct: 519 VILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMN 578

Query: 131 GLCRTGH-TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           G  + G    V + +++   N N  +     P+  +Y+ +  G  K+G + ++  L+  M
Sbjct: 579 GYLKAGKLHKVEMTIYD--MNQNKVY-----PNPASYNILMHGHIKKGHLSRSIYLYKDM 631

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
             + I P  VTY  LI G         A     +M+ +G+ P+ ++F+V++N   +  +M
Sbjct: 632 VRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRM 691

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +A +L   M  + + P +  Y+ +++G      +  + ++   M  +G       Y  L
Sbjct: 692 SDALQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIAL 751

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           IN  C+  +I GA  L  EM + GI P  V 
Sbjct: 752 INAKCRFGDINGAFRLKEEMTALGIVPAEVA 782



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 146/307 (47%), Gaps = 7/307 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           S++  +   G  PD+YTY  L+   CK G +      +  I+      D  T  +L+ G+
Sbjct: 415 SVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAIDQKTLNALLLGI 474

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C    + EA  L  K+      PD+ TYT L++G CR G  + A+ L + M     E G+
Sbjct: 475 CNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMML----EKGL 530

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMK-DENINPDVVTYTSLIRGFCYANDWNE 216
           V  PD +TY+ +  GL KEG V  A  LF ++   E +  D + Y S++ G+  A   ++
Sbjct: 531 V--PDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMNGYLKAGKLHK 588

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
            +    +M    V PN  ++N++M+   K G +  +  L + M++ G++P    Y  L+ 
Sbjct: 589 VEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLIL 648

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G    G +  A +    M   G   D  S+ +LIN + +   +  AL L++ M    + P
Sbjct: 649 GLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSP 708

Query: 337 TVVTYNT 343
           +  TY+ 
Sbjct: 709 SSKTYSA 715



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 151/324 (46%), Gaps = 38/324 (11%)

Query: 49  FP-DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA 107
           FP D+ T NI++N  C  G +     ++ + ++SC  P+ +T+ +++     + R   A 
Sbjct: 221 FPLDVTTCNIVLNSMCIEGNLKGAKHMIHK-MKSCSLPNVITYNTILHWYVKKGRFKAAM 279

Query: 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167
            +   +   G + DV+TY  +I+ LC+   +  A  L + M   N        PD  TY+
Sbjct: 280 CVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDN------LAPDECTYN 333

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
           T+  G   E  +  A  +F +M  + + P + TYT+LI G+C     +EA  +  EM   
Sbjct: 334 TLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVA 393

Query: 228 GVQPNVVTFNVIMN------------------------------ELCKNGKMDEASRLLE 257
           GV+P+ VT++ ++N                               LCK G + +A   + 
Sbjct: 394 GVKPSEVTYSAMLNGSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMS 453

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            ++ I    D    N L+ G C  G ++ A +L   M +   + D+ +Y IL++G+C+  
Sbjct: 454 CIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKG 513

Query: 318 EIEGALSLYSEMLSKGIRPTVVTY 341
           +I  A+ L   ML KG+ P +VTY
Sbjct: 514 KIVPAVILLQMMLEKGLVPDIVTY 537



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 11/330 (3%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           +++P+P    S+NIL     K  H    + L+K +   G+ P   TY +LI    K G +
Sbjct: 600 KVYPNPA---SYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMI 656

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                 L +++     PD ++F  LI     +SR+ +A  LF  ++     P   TY+ +
Sbjct: 657 EIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAM 716

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           INGL R      + ++  +M     E      P    Y  + +  C+ G ++ A  L  +
Sbjct: 717 INGLIRKNWLQHSCDVLRDMVESGLE------PKHTHYIALINAKCRFGDINGAFRLKEE 770

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M    I P  V  +S++RG        E   +F  ++  G+ P + TF  +M+ LCK  K
Sbjct: 771 MTALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAK 830

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + +A  L  LM   G++ D   YN L+ G C    V+ A EL+  M+S G   +V +Y  
Sbjct: 831 ISDALHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTT 890

Query: 309 LING-YCKNKEIEGALSLYSEMLSKGIRPT 337
           L    Y   + +EG   L +++  +G+ P+
Sbjct: 891 LTEAIYGTGRTLEGE-KLLNDIEDRGLVPS 919



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 127/260 (48%), Gaps = 11/260 (4%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           + + F  L+     E R+++A+     +   G K        ++N L   G +       
Sbjct: 154 NPLVFDLLVNAYVKEKRVVDASMAILFMDNCGFKASAHACNAVLNALVEIGESKHVWFFL 213

Query: 146 EEMANGNGEFGVVCK--PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           +E        G+V K   D  T + + + +C EG +  AK +  KMK  ++ P+V+TY +
Sbjct: 214 KE--------GLVRKFPLDVTTCNIVLNSMCIEGNLKGAKHMIHKMKSCSL-PNVITYNT 264

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           ++  +     +  A C+  +M   GV+ +V T+N+++++LCK  +   A  LL+ M    
Sbjct: 265 ILHWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDN 324

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           + PD   YNTL+ GF    ++  A  +F  M   G    + +Y  LI+GYC+N  I+ AL
Sbjct: 325 LAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEAL 384

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            +  EM   G++P+ VTY+ 
Sbjct: 385 RVLYEMQVAGVKPSEVTYSA 404


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 169/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM+ +G++P+  T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G +P+VVT
Sbjct: 405 KEMQRDGYKPSVVT 418



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 155/285 (54%), Gaps = 6/285 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDG 411



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 91/252 (36%), Positives = 135/252 (53%), Gaps = 6/252 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K    +    L   + + G+ PD+YTY++LIN  CK  ++    V+
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P+ VTFT+LI G C   R+  A  ++ ++ +    PD+ TY TLI GLC+
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L +EM           KPD  TY+T+ DG CKEG ++ A E   +M  ENI
Sbjct: 289 KGDLKQAQDLIDEMIMKG------LKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENI 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V YT+LI G C      +A+ +  EM+  G++P + T+ +I+NE CK G +   S+
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSK 402

Query: 255 LLELMIQIGVRP 266
           LL+ M + G +P
Sbjct: 403 LLKEMQRDGYKP 414



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 133/252 (52%), Gaps = 6/252 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F  L+     E  I  A ++F  +  +G +P V ++ TL+NG  + G     LN    + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGD----LNEGFRLK 194

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           N     GV  +PD  TYS + +GLCKE  +D A  LF +M D+ + P+ VT+T+LI G C
Sbjct: 195 NAMQASGV--QPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L++ MI  G++PD  
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKF 312

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y TL+DG C  G +  A E    M       D  +Y  LI+G C+      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 330 LSKGIRPTVVTY 341
           LS G++P + TY
Sbjct: 373 LSVGLKPEIGTY 384



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 100/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +    + P VV++ +L+ G+    D NE   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM+ KG++P   TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTT 316



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+   K G++  A  + + + + G+RP    +NTLM+G+ 
Sbjct: 123 FYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +N    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  V
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+ M    P   ++  L     K    +T     KR+    +  D   Y  LI+  
Sbjct: 298 LIDEMI-MKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR      +L  +L     P+  T+T +I   C +  +   + L  +++  G KP V
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSV 416

Query: 123 FT 124
            T
Sbjct: 417 VT 418


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 170/364 (46%), Gaps = 38/364 (10%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V +FN +   LA+ +    +  ++  +     + PD+ TY IL+N  CK GRV     VL
Sbjct: 136 VFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVL 195

Query: 76  GRILRSCFT--PDAVTFTSLIKGLCAESRIMEAAALFTKLR---AFGCKPDVFTYTTLIN 130
             + R      PD VT  +++ GLC   R+ EA A F + R     GC P+  TY  LI+
Sbjct: 196 DGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALA-FVEQRMSSVHGCPPNTVTYNCLID 254

Query: 131 GLCRTGHTIVALNLFEEMANG---------NGEFGVVC---------------------- 159
             CR G+  +A  L E+M N          N   G +C                      
Sbjct: 255 AFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEG 314

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           K +A+TYST+   L     V  A ELF +   E  +PD + Y ++I G   A    +A  
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACS 374

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +   M + G + +   +N+++   C+  ++ EA  LL+ M ++G+RPD   YNTL+ G C
Sbjct: 375 MASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G      EL   M  +GC   V ++G L++GYCK  +I+ AL +   M   GI P  V
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNV 494

Query: 340 TYNT 343
            YNT
Sbjct: 495 IYNT 498



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 167/334 (50%), Gaps = 12/334 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLF-KRLNSI-GLFPDLYTYNILINCFCKMGRVSPGF 72
           P V + N +   L K+      L+   +R++S+ G  P+  TYN LI+ FC++G +S  +
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLIN 130
            ++ ++       + VT  +++ GLC   R   A   F + R      K +  TY+TL+ 
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVG 326

Query: 131 GLCRTGHTIVALNLF-EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            L  T +  +A+ LF E+M+ G+        PDAI Y T+  GL + G ++ A  +   M
Sbjct: 327 ALLHTNNVGMAMELFHEKMSEGH-------SPDAIMYFTMISGLTQAGRLEDACSMASSM 379

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           K+     D   Y  LI GFC     +EA  L  EM + G++P+V T+N +++  CK G  
Sbjct: 380 KEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDF 439

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
                LL  MI  G +P    + TL+ G+C  G+++ A  +  SM+ +G   +   Y  L
Sbjct: 440 AAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTL 499

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+  CK  +++ A+ L+ EM  K +   V T+N 
Sbjct: 500 IDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNA 533



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 136/302 (45%), Gaps = 12/302 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYNILINCFCKMGRVS 69
           P  + + N + G L +       L  F+   ++  +P+      TY+ L+        V 
Sbjct: 278 PQNIVTLNTIVGGLCRAGRTGAALEFFREKRTV--WPEGKGNAVTYSTLVGALLHTNNVG 335

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +    +    +PDA+ + ++I GL    R+ +A ++ + ++  G K D   Y  LI
Sbjct: 336 MAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILI 395

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G CR      A  L +EM     E G+  +PD  TY+T+  G CK G      EL  KM
Sbjct: 396 AGFCRKKRLHEAYELLQEMK----EVGI--RPDVCTYNTLLSGSCKAGDFAAVDELLGKM 449

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            D+   P V+T+ +L+ G+C     +EA  +   M + G+ PN V +N +++ LCK G +
Sbjct: 450 IDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDV 509

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  L + M +  V  + + +N L+ G        +A EL   M    C  D  +  +L
Sbjct: 510 DLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVL 569

Query: 310 IN 311
           + 
Sbjct: 570 ME 571



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 141/301 (46%), Gaps = 50/301 (16%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC---KPDVFTYTTLINGLCRTGHTIVAL 142
           D   F S++  L     +   A ++  ++  GC   +PDV TY  L+NGLC+ G    AL
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQ--GCASVRPDVVTYGILVNGLCKAGRVGDAL 192

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN---PDVV 199
            + + M+  + +     +PD +T +T+ DGLCK G V +A   F++ +  +++   P+ V
Sbjct: 193 RVLDGMSRQDLDI----RPDVVTLNTVVDGLCKSGRVQEALA-FVEQRMSSVHGCPPNTV 247

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA------- 252
           TY  LI  FC   + + A  L  +M ++GV  N+VT N I+  LC+ G+   A       
Sbjct: 248 TYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREK 307

Query: 253 --------------SRLLELMIQI----------------GVRPDASVYNTLMDGFCLTG 282
                         S L+  ++                  G  PDA +Y T++ G    G
Sbjct: 308 RTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAG 367

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           R+  A  +  SM+  G   D  +Y ILI G+C+ K +  A  L  EM   GIRP V TYN
Sbjct: 368 RLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYN 427

Query: 343 T 343
           T
Sbjct: 428 T 428



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 7/241 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F   +    SP  +  F ++ G L +    +   S+   +   G   D   YNILI  F
Sbjct: 340 LFHEKMSEGHSPDAIMYFTMISG-LTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGF 398

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  R+   + +L  +      PD  T+ +L+ G C          L  K+   GC+P V
Sbjct: 399 CRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSV 458

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+ TL++G C+ G    AL +   M     E G+   P+ + Y+T+ D LCK G VD A
Sbjct: 459 ITFGTLVHGYCKVGKIDEALRILRSM----DESGI--HPNNVIYNTLIDFLCKRGDVDLA 512

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ELF +MK++++  +V T+ +L++G    N   +A  L  +M ++   P+ VT +V+M  
Sbjct: 513 IELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEW 572

Query: 243 L 243
           L
Sbjct: 573 L 573


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 168/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     KN + D    +F R+   G  P+  TY+ LIN  C  GR+     +
Sbjct: 235 PDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDM 294

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P    +T  I  LC   R  EA  L  K++  GC P+V TYT LI+GL R
Sbjct: 295 LEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSR 354

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   VA+ ++ +M       G+V  P A+TYS + + L  EG  + A  +F  M   + 
Sbjct: 355 DGKFEVAIGVYHKMLAD----GLV--PTAVTYSALINQLYVEGRFETALTIFEWMLSHDS 408

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY  +I+GFC      +A  +F +M+  G  PNV+T+N+I++   K G M+ A R
Sbjct: 409 LPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMR 468

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE+M   G++ D   Y  L+ GF   G++  A  LF  M  +G   +V +Y  +INGY 
Sbjct: 469 LLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYL 528

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              +++ AL+L+ +M+  G  P+  TYN
Sbjct: 529 TVAKVDDALALFWKMVESGNVPSSGTYN 556



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 162/330 (49%), Gaps = 30/330 (9%)

Query: 43  LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
           LNS G+ P+L+T+N +I   C  G+V    +++G I      PD  T+TSLI G C    
Sbjct: 194 LNS-GIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGN 252

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV---- 158
           +  A  +F ++   GC P+  TY+ LINGLC  G    A+++ EEM +   E  V     
Sbjct: 253 LDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTI 312

Query: 159 -------------------------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                                    C P+  TY+ +  GL ++G  + A  ++ KM  + 
Sbjct: 313 PIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADG 372

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P  VTY++LI        +  A  +F  M+     PN  T+NVI+   C  G + +A+
Sbjct: 373 LVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKAT 432

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + + M++ G  P+   YN ++  +   G +N A  L   M+ NG   D ++Y  LI+G+
Sbjct: 433 AIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGF 492

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  ++E A SL++EM+  GI P VVTYN 
Sbjct: 493 SRGGKLEHAFSLFNEMVEHGISPNVVTYNA 522



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 154/291 (52%), Gaps = 6/291 (2%)

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
           LY+++ L+    K      G  V   +L S   P+  TF ++IK LC + ++ EA  +  
Sbjct: 167 LYSFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMG 226

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
            +  +G  PD FTYT+LI G C+ G+  +A  +F+ M          C P+++TYS + +
Sbjct: 227 HIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDG------CDPNSVTYSALIN 280

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           GLC EG +++A ++  +M D+ I P V  YT  I   C A    EA  L  +M  +G  P
Sbjct: 281 GLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGP 340

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           NV T+  +++ L ++GK + A  +   M+  G+ P A  Y+ L++   + GR   A  +F
Sbjct: 341 NVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIF 400

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             M S+  + +  +Y ++I G+C    I+ A +++ +ML  G  P V+TYN
Sbjct: 401 EWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYN 451



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 170/372 (45%), Gaps = 30/372 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M++    P  V +++ L   L      +  + + + +   G+ P ++ Y I I 
Sbjct: 257 FEMFDRMVKDGCDPNSV-TYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIV 315

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  GR      +LG++ +    P+  T+T+LI GL  + +   A  ++ K+ A G  P
Sbjct: 316 SLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVP 375

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNG-----EFGVVCK--------------- 160
              TY+ LIN L   G    AL +FE M + +       + V+ K               
Sbjct: 376 TAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIF 435

Query: 161 ---------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    P+ ITY+ I     K+G+++ A  L   MK   +  D  TY +LI GF   
Sbjct: 436 DQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRG 495

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                A  LF EM++ G+ PNVVT+N I+N      K+D+A  L   M++ G  P +  Y
Sbjct: 496 GKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTY 555

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N ++ GF  T R++ A+     M   G + +V +Y   I+G CKN     A  ++ EM  
Sbjct: 556 NMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKK 615

Query: 332 KGIRPTVVTYNT 343
           +   P + TY++
Sbjct: 616 RDYFPNLCTYSS 627



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 169/339 (49%), Gaps = 11/339 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF++ML  H S P   ++N++        +     ++F ++   G  P++ TYNI+I+ +
Sbjct: 399 IFEWMLS-HDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIY 457

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G ++    +L  +  +    D  T+ +LI G     ++  A +LF ++   G  P+V
Sbjct: 458 FKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNV 517

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +ING         AL LF +M     E G V  P + TY+ +  G  K   + +A
Sbjct: 518 VTYNAIINGYLTVAKVDDALALFWKMV----ESGNV--PSSGTYNMMISGFSKTNRISEA 571

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           +    KM  + + P+V+TYTS I G C     + A  +F EM  +   PN+ T++ +++ 
Sbjct: 572 ENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDG 631

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+ G+ ++A RLL+     G  P+   Y TL+ G C  GR   A +L  SM+  G    
Sbjct: 632 LCQEGQAEDAERLLD----DGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPS 687

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              Y  L+ G CKN E+E AL ++  M++ G +P +  Y
Sbjct: 688 EEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDY 726



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 166/329 (50%), Gaps = 10/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L+++  ++  + ++ ++ + GL P   TY+ LIN     GR      +
Sbjct: 340 PNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTI 399

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P+  T+  +IKG C+   I +A A+F ++   G  P+V TY  +I+   +
Sbjct: 400 FEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFK 459

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A+ L E M  GNG      K D  TY+ +  G  + G ++ A  LF +M +  I
Sbjct: 460 QGYMNNAMRLLE-MMKGNG-----LKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGI 513

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+VVTY ++I G+      ++A  LF +M++ G  P+  T+N++++   K  ++ EA  
Sbjct: 514 SPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAEN 573

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M++ G+ P+   Y + +DG C  GR + A ++F  M+      ++ +Y  LI+G C
Sbjct: 574 FCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLC 633

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  + E A      +L  G  P V TY T
Sbjct: 634 QEGQAEDA----ERLLDDGCEPNVDTYTT 658



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 172/366 (46%), Gaps = 46/366 (12%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            IFD ML+  PSP  V ++NI+     K  + +  + L + +   GL  D +TY  LI+ 
Sbjct: 433 AIFDQMLKAGPSPN-VITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISG 491

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-------- 113
           F + G++   F +   ++    +P+ VT+ ++I G    +++ +A ALF K+        
Sbjct: 492 FSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPS 551

Query: 114 --------RAF-------------------GCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
                     F                   G  P+V TYT+ I+GLC+ G T +A  +F 
Sbjct: 552 SGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFH 611

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM   +        P+  TYS++ DGLC+EG  + A+ L     D+   P+V TYT+L+R
Sbjct: 612 EMKKRD------YFPNLCTYSSLIDGLCQEGQAEDAERLL----DDGCEPNVDTYTTLVR 661

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C      EA  L   M  +G+QP+   +  ++   CKN +++ A ++ + M+  G +P
Sbjct: 662 GLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQP 721

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
             S Y  L+   C      +A+ +F +M       D   + +L++G  K  E + +L L 
Sbjct: 722 CLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELL 781

Query: 327 SEMLSK 332
             M S+
Sbjct: 782 HVMESR 787



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 144/299 (48%), Gaps = 11/299 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F+ M+  H   P V ++N +          D  L+LF ++   G  P   TYN++I+
Sbjct: 502 FSLFNEMVE-HGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMIS 560

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            F K  R+S      G++++    P+ +T+TS I GLC   R   A  +F +++     P
Sbjct: 561 GFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFP 620

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY++LI+GLC+ G    A  L ++           C+P+  TY+T+  GLC +G   
Sbjct: 621 NLCTYSSLIDGLCQEGQAEDAERLLDDG----------CEPNVDTYTTLVRGLCGKGRCY 670

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A +L   MK + + P    Y +L+ G C   +   A  +F  M+  G QP +  +  ++
Sbjct: 671 EADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALI 730

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
             LCK     +A  + + M++     D  V+  L+DG    G  + + EL   MES  C
Sbjct: 731 CALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNC 789


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 165/314 (52%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L + ++A G  PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM B     G+V  P+ +T++T+ DG CK G VD A E++ +M  +++ PD++TY +LI 
Sbjct: 231 EMLBN----GLV--PNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A  L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRX 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN  CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P VVT
Sbjct: 405 KEMQRXGYVPNVVT 418



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/253 (36%), Positives = 137/253 (54%), Gaps = 6/253 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K    D    L   + + G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANEL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L +   P+ VTFT+LI G C   R+  A  ++ ++ +    PD+ TY TLI GLC+
Sbjct: 229 FDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCK 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L +EM+          KPD ITY+T+ DG CKEG ++ A E   +M  ENI
Sbjct: 289 KGDLKQAHDLIDEMSMKG------LKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENI 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V YT+LI G C      +A+ +  EM+  G++P + T+ +I+NE CK G +   S+
Sbjct: 343 RXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSK 402

Query: 255 LLELMIQIGVRPD 267
           LL+ M + G  P+
Sbjct: 403 LLKEMQRXGYVPN 415



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++ +M + +        PD ITY+T+  GLCK+G + +A +L  +M  + 
Sbjct: 253 KNGRVDLAMEIYRQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++  C  G V    +L   M+  G + +V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 131/254 (51%), Gaps = 8/254 (3%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM- 148
           F  L+   C E  I  A ++F  +  +G +P V ++ TL+NG  + G       L   M 
Sbjct: 139 FNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           A+G         PD  TYS + +GLCKE  +D A ELF +M B  + P+ VT+T+LI G 
Sbjct: 199 ASG-------VHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGH 251

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L++ M   G++PD 
Sbjct: 252 CKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK 311

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y TL+DG C  G +  A E    M       D  +Y  LI+G C+      A  +  E
Sbjct: 312 ITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLRE 371

Query: 329 MLSKGIRPTVVTYN 342
           MLS G++P + TY 
Sbjct: 372 MLSVGLKPEIGTYT 385



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 98/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CKEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M   GV P+V
Sbjct: 147 CKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDV 206

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 207 YTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQ 266

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 267 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 316



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 90/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   +I        +     
Sbjct: 63  RSDXYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+  CK G++  A  + + + + G+RP    +NTLM+G+ 
Sbjct: 123 FYEESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L   M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  V
Sbjct: 183 KIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 159/325 (48%), Gaps = 10/325 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S+  L     +    D  + LF  ++     PD++ Y  L+   CK GR   G ++L 
Sbjct: 81  VVSYAALIEGFCETGRIDEAVELFGEMDQ----PDMHMYAALVKGLCKAGRGEEGLLMLR 136

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R+    + P    + +++   C E +  EA  +  ++   G  P V T T +IN  C+ G
Sbjct: 137 RMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEG 196

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL + E M          CKP+  TY+ +  G C EG V KA  L  KM+   +NP
Sbjct: 197 RMSDALRVLELMKLRG------CKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNP 250

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTY  LIRG C       A  L   M   G+  +  T+N ++N LCK+G+ D+A  L 
Sbjct: 251 DAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF 310

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + +   G++P+A  +N+L++G C +G+V+ A +    M S GC  D ++Y   I   CK 
Sbjct: 311 DSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKM 370

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
           K  +  LS   EML K ++P+ V Y
Sbjct: 371 KGSQEGLSFIGEMLQKDVKPSTVNY 395



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 155/327 (47%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +   +     K       L + + +   G  P+++TYN L+  FC  G+V     +
Sbjct: 180 PCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMAL 239

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PDAVT+  LI+G C +  I  A  L   +   G   D +TY  LIN LC+
Sbjct: 240 LNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCK 299

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G T  A +LF+ +           KP+A+T++++ +GLCK G VD A +   KM     
Sbjct: 300 DGRTDQACSLFDSLETRG------IKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGC 353

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY+S I   C      E      EM+ + V+P+ V + +++++L K       +R
Sbjct: 354 TPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVAR 413

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M+  G  PD   Y T M  +C+ GR+N A+ + + M  NG   D  +Y  L++G+ 
Sbjct: 414 TWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHA 473

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
              + + A+S+  +M S    P   TY
Sbjct: 474 SIGQTDHAVSILKQMTSVASVPNQFTY 500



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 157/315 (49%), Gaps = 25/315 (7%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           TYN +I   C+   ++     L  ++RS + PDA TF SLI G C  +++  A  LF K+
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN----------------GNGEFGV 157
              G   DV +Y  LI G C TG    A+ LF EM                  G GE G+
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGL 132

Query: 158 V---------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           +          +P    Y+ + D  C E    +A+E+  +M ++ + P VVT T++I  +
Sbjct: 133 LMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAY 192

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C     ++A  +   M  +G +PNV T+N ++   C  GK+ +A  LL  M   GV PDA
Sbjct: 193 CKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDA 252

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             YN L+ G C+ G +  A  L   ME +G + D ++Y  LIN  CK+   + A SL+  
Sbjct: 253 VTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDS 312

Query: 329 MLSKGIRPTVVTYNT 343
           + ++GI+P  VT+N+
Sbjct: 313 LETRGIKPNAVTFNS 327



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 158/329 (48%), Gaps = 10/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L     +    D    LF ++   G   D+ +Y  LI  FC+ GR+     +
Sbjct: 44  PDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVEL 103

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G + +    PD   + +L+KGLC   R  E   +  +++  G +P    Y  +++  C 
Sbjct: 104 FGEMDQ----PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCW 159

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  + +EM      F     P  +T + + +  CKEG +  A  +   MK    
Sbjct: 160 ERKAKEAEEMLQEM------FEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC 213

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY +L++GFC     ++A  L  +M   GV P+ VT+N+++   C +G ++ A R
Sbjct: 214 KPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFR 273

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL LM   G+  D   YN L++  C  GR ++A  LF S+E+ G   +  ++  LING C
Sbjct: 274 LLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLC 333

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+ +++ A     +M+S G  P   TY++
Sbjct: 334 KSGKVDIAWKFLEKMVSAGCTPDTYTYSS 362



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 154/333 (46%), Gaps = 6/333 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++++    P V ++N L             ++L  ++   G+ PD  TYN+LI   C  G
Sbjct: 207 LMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDG 266

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +   F +L  +       D  T+ +LI  LC + R  +A +LF  L   G KP+  T+ 
Sbjct: 267 HIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFN 326

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           +LINGLC++G   +A    E+M +        C PD  TYS+  + LCK     +     
Sbjct: 327 SLINGLCKSGKVDIAWKFLEKMVSAG------CTPDTYTYSSFIEHLCKMKGSQEGLSFI 380

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ P  V YT +I       ++      + EM+  G  P+VVT+   M   C  
Sbjct: 381 GEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIE 440

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G+++EA  +L  M + GV  D   YNTLMDG    G+ + A  +   M S   + + F+Y
Sbjct: 441 GRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTY 500

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            IL+    + + +E  L L    + K I  T V
Sbjct: 501 FILLRHLVRMRLVEDVLPLTPAGVWKAIELTDV 533



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 142/307 (46%), Gaps = 8/307 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI-LRSCFTPDAVTFTSLIKG 96
            + + +   GL P + T   +IN +CK GR+S    VL  + LR C  P+  T+ +L++G
Sbjct: 168 EMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC-KPNVWTYNALVQG 226

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
            C E ++ +A AL  K+R  G  PD  TY  LI G C  GH   A  L   M  G+G   
Sbjct: 227 FCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLM-EGDGLIA 285

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
                D  TY+ + + LCK+G  D+A  LF  ++   I P+ VT+ SLI G C +   + 
Sbjct: 286 -----DQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDI 340

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A     +M+  G  P+  T++  +  LCK     E    +  M+Q  V+P    Y  ++ 
Sbjct: 341 AWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIH 400

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
                         +  M S+GC  DV +Y   +  YC    +  A ++  EM   G+  
Sbjct: 401 KLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTV 460

Query: 337 TVVTYNT 343
             + YNT
Sbjct: 461 DTMAYNT 467



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 147/373 (39%), Gaps = 46/373 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L K+   D      +++ S G  PD YTY+  I   CKM     G   
Sbjct: 320 PNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSF 379

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +G +L+    P  V +T +I  L  E      A  + ++ + GC PDV TYTT +   C 
Sbjct: 380 IGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCI 439

Query: 135 TGHTIVALNLFEEMA---------------NGNGEFG--------------VVCKPDAIT 165
            G    A N+  EM+               +G+   G              V   P+  T
Sbjct: 440 EGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFT 499

Query: 166 YSTITDGLCKEGFVD-----------KAKEL------FLKMKDENINPDVVTYTSLIRGF 208
           Y  +   L +   V+           KA EL      F  MK     P+  TY+S++ GF
Sbjct: 500 YFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGF 559

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
                  EA  L   M +  +  N   +  ++   CK+ +  +A  L+  MIQ G  P  
Sbjct: 560 SEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHL 619

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y  L+ G    G+ ++AKE+F++        D   + ++I+G  K    + +  +   
Sbjct: 620 MSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIM 679

Query: 329 MLSKGIRPTVVTY 341
           +     RP+  TY
Sbjct: 680 LERMNCRPSHQTY 692



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 145/306 (47%), Gaps = 11/306 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ I+   L K ++Y  V   +  + S G  PD+ TY   +  +C  GR++    V
Sbjct: 390 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 449

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + ++  T D + + +L+ G  +  +   A ++  ++ +    P+ FTY  L+  L R
Sbjct: 450 LMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVR 509

Query: 135 TGHTIVALNLFE-------EMANGNGEFGVVCK----PDAITYSTITDGLCKEGFVDKAK 183
                  L L         E+ +  G F V+ K    P++ TYS+I +G  ++G  ++A 
Sbjct: 510 MRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEAT 569

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L   MK+++I+ +   YT+L+  FC +  + +A  L   M+  G  P+++++  +++ L
Sbjct: 570 SLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGL 629

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
              G+ D+A  +          PD  V+  ++DG    G  + ++E+ + +E   C    
Sbjct: 630 ICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSH 689

Query: 304 FSYGIL 309
            +Y +L
Sbjct: 690 QTYAML 695



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 111/242 (45%), Gaps = 23/242 (9%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV------SPG- 71
           ++N L    A     D  +S+ K++ S+   P+ +TY IL+    +M  V      +P  
Sbjct: 464 AYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAG 523

Query: 72  ----------FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
                     F +   + ++ F P++ T++S+++G   + R  EA +L + ++      +
Sbjct: 524 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 583

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
              YT L+   C++   + A  L   M     + G +  P  ++Y  +  GL  EG  DK
Sbjct: 584 EDIYTALVTCFCKSKRYLDAWVLVCSMI----QHGFI--PHLMSYQHLLSGLICEGQTDK 637

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AKE+F+  + ++ +PD + +  +I G       + ++ + I +     +P+  T+ ++  
Sbjct: 638 AKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTE 697

Query: 242 EL 243
           EL
Sbjct: 698 EL 699


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 171/320 (53%), Gaps = 6/320 (1%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82
           L G L K   +   + L+ RL   G   +L T N LI+  CK G +     +L ++L   
Sbjct: 529 LVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERG 588

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           F  D +T+ +LI G C E ++ E   L  ++   G +PD FTY  LI+G+CR G    A+
Sbjct: 589 FVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAV 648

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
           NL+ E  + +        P+  TY  + DG CK   +++ ++LF ++  +N+  + V Y 
Sbjct: 649 NLWNECKSRD------LVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYN 702

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           +LIR +C   +  EA  L  +M  +G+ P   T++ +++ +C  G+M++A  L++ M + 
Sbjct: 703 TLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKE 762

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G+ P+   Y  L+ G+C  G++++   +   M S     +  +Y ++I+GY K+ +++ A
Sbjct: 763 GLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTA 822

Query: 323 LSLYSEMLSKGIRPTVVTYN 342
             L  EM+ KGI P  VTYN
Sbjct: 823 AKLLHEMVGKGIVPDTVTYN 842



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 174/327 (53%), Gaps = 10/327 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++++L   L K + ++   S+ K     G  P+   YN LI+ +CKMG +     + G +
Sbjct: 385 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 444

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGLCRTG 136
           +     P++VT  S+I+G C   ++ +A  +  ++  R F   P  FT  T+I+ LC   
Sbjct: 445 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFT--TIIHWLCMNS 502

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL    EM   N       +P+    +T+  GLCKEG    A EL+ ++ ++    
Sbjct: 503 RFESALRFLREMLLRN------MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGA 556

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           ++VT  +LI G C   +  EA  L  +M+++G   + +T+N +++  CK GK++E  +L 
Sbjct: 557 NLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLR 616

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M++ G+ PD   YN L+ G C  G+++ A  L+   +S   + +V++YG++I+GYCK 
Sbjct: 617 GEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKA 676

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +IE    L++E+L++ +    V YNT
Sbjct: 677 DKIEEGEKLFTELLTQNLELNSVVYNT 703



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 152/300 (50%), Gaps = 6/300 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N L   L K  +    + L K++   G   D  TYN LI+  CK G+V  GF + G +++
Sbjct: 562 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 621

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD  T+  LI G+C   ++ EA  L+ + ++    P+V+TY  +I+G C+      
Sbjct: 622 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 681

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
              LF E+   N E       +++ Y+T+    C+ G   +A +L   M+ + I P   T
Sbjct: 682 GEKLFTELLTQNLEL------NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTAT 735

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y+SLI G C      +AKCL  EM  +G+ PNVV +  ++   CK G+MD+   +L+ M 
Sbjct: 736 YSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMS 795

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
              + P+   Y  ++DG+  +G +  A +L   M   G + D  +Y +L NG+CK  +IE
Sbjct: 796 SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIE 855



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 166/340 (48%), Gaps = 7/340 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           CI + ML    S  P  +F  +   L  N  +++ L   + +    + P+      L+  
Sbjct: 474 CILEEMLSRGFSINP-GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGG 532

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G+ S    +  R+L   F  + VT  +LI GLC    + EA  L  K+   G   D
Sbjct: 533 LCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLD 592

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TY TLI+G C+ G       L  EM     E      PD  TY+ +  G+C+ G +D+
Sbjct: 593 KITYNTLISGCCKEGKVEEGFKLRGEMVKQGIE------PDTFTYNLLIHGMCRIGKLDE 646

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L+ + K  ++ P+V TY  +I G+C A+   E + LF E++ Q ++ N V +N ++ 
Sbjct: 647 AVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIR 706

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             C+NG   EA +L + M   G+ P  + Y++L+ G C  GR+  AK L   M   G + 
Sbjct: 707 AYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLP 766

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +V  Y  LI GYCK  +++  +++  EM S  I P  +TY
Sbjct: 767 NVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 806



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 172/362 (47%), Gaps = 41/362 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  F+       K    +  + LF  +  +G+ P++ TYN LI+  CK G +   F  
Sbjct: 311 PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRF 370

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++++       +T++ LI GL    +  EA ++  +    G  P+   Y TLI+G C+
Sbjct: 371 KEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCK 430

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM--KDE 192
            G+   AL +  +M +          P+++T ++I  G CK G +++A+ +  +M  +  
Sbjct: 431 MGNLGDALRIRGDMVSKG------INPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGF 484

Query: 193 NINPDVVT---------------------------------YTSLIRGFCYANDWNEAKC 219
           +INP   T                                  T+L+ G C     ++A  
Sbjct: 485 SINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVE 544

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L+  ++++G   N+VT N +++ LCK G M EA RLL+ M++ G   D   YNTL+ G C
Sbjct: 545 LWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCC 604

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G+V    +L   M   G   D F+Y +LI+G C+  +++ A++L++E  S+ + P V 
Sbjct: 605 KEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVY 664

Query: 340 TY 341
           TY
Sbjct: 665 TY 666



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 162/320 (50%), Gaps = 15/320 (4%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFP-DLYTYNILINCFCKMGRVSPGFV----VLG 76
           +LFG   KN+H + + S    LN +G     +   ++LI+ +C   R + GF     V  
Sbjct: 212 VLFGD-PKNRHIE-IASAMADLNEVGESGVAVAAVDLLIHVYCTQFR-NVGFRNAIGVFR 268

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P   T T L+  L   + + ++  +F  +R  G  PDV+ ++T IN  C+ G
Sbjct: 269 FLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGG 327

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ LF +M     + GV   P+ +TY+ +  GLCK G +D+A     KM  + +N 
Sbjct: 328 KVEDAIQLFFDME----KLGV--SPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNA 381

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            ++TY+ LI G      +NEA  +  E +++G  PN V +N +++  CK G + +A R+ 
Sbjct: 382 TLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIR 441

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M+  G+ P++   N+++ GFC  G++ +A+ +   M S G   +  ++  +I+  C N
Sbjct: 442 GDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMN 501

Query: 317 KEIEGALSLYSEMLSKGIRP 336
              E AL    EML + +RP
Sbjct: 502 SRFESALRFLREMLLRNMRP 521



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 6/243 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N+L   + +    D  ++L+    S  L P++YTY ++I+ +CK  ++  G  +
Sbjct: 626 PDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKL 685

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L      ++V + +LI+  C     +EA  L   +R+ G  P   TY++LI+G+C 
Sbjct: 686 FTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCN 745

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L +EM       G++  P+ + Y+ +  G CK G +DK   +  +M   +I
Sbjct: 746 IGRMEDAKCLIDEMRKE----GLL--PNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDI 799

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ +TYT +I G+  + D   A  L  EM+ +G+ P+ VT+NV+ N  CK GK++E   
Sbjct: 800 HPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKL 859

Query: 255 LLE 257
           L E
Sbjct: 860 LAE 862



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 156/338 (46%), Gaps = 24/338 (7%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFK-RLNSIGLFPDLYTYNILINCFCKMGRVS 69
           H SP     F+ +F  + +N +  T L+ F    +S G    L +Y +L+      G VS
Sbjct: 140 HLSPH---QFDSVFFSVRRNVNPKTALNFFYFASDSCGFRFTLRSYCVLMRSLIVSGFVS 196

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTL 128
           P  ++L R++        V F         ++R +E A+    L   G     V     L
Sbjct: 197 PARLLLIRLIDRKL---PVLFGD------PKNRHIEIASAMADLNEVGESGVAVAAVDLL 247

Query: 129 INGLCRTGHTIV---ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           I+  C     +    A+ +F  +AN  G F     P   T + +   L K   ++K+  +
Sbjct: 248 IHVYCTQFRNVGFRNAIGVFRFLAN-KGVF-----PTVKTCTFLLSSLVKANELEKSYWV 301

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F  M+ + ++PDV  +++ I  FC      +A  LF +M   GV PNVVT+N +++ LCK
Sbjct: 302 FETMR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCK 360

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           +G +DEA R  E M++ GV      Y+ L++G     + N A  +       G   +   
Sbjct: 361 HGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVV 420

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y  LI+GYCK   +  AL +  +M+SKGI P  VT N+
Sbjct: 421 YNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 458



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 56/129 (43%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    PP   +++ L   +      +    L   +   GL P++  Y  LI  +CK+G+
Sbjct: 724 MRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQ 783

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     VL  +      P+ +T+T +I G      +  AA L  ++   G  PD  TY  
Sbjct: 784 MDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNV 843

Query: 128 LINGLCRTG 136
           L NG C+ G
Sbjct: 844 LTNGFCKEG 852


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 170/364 (46%), Gaps = 38/364 (10%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V +FN +   LA+ +    +  ++  +     + PD+ TY IL+N  CK GRV     VL
Sbjct: 136 VFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVL 195

Query: 76  GRILRSCFT--PDAVTFTSLIKGLCAESRIMEAAALFTKLR---AFGCKPDVFTYTTLIN 130
             + R      PD VT  +++ GLC   R+ EA A F + R     GC P+  TY  LI+
Sbjct: 196 DGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALA-FVEQRMSSVHGCPPNTVTYNCLID 254

Query: 131 GLCRTGHTIVALNLFEEMANG---------NGEFGVVC---------------------- 159
             CR G+  +A  L E+M N          N   G +C                      
Sbjct: 255 AFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEG 314

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           K +A+TYST+   L     V  A ELF +   E  +PD + Y ++I G   A    +A  
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACS 374

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +   M + G + +   +N+++   C+  ++ EA  LL+ M ++G+RPD   YNTL+ G C
Sbjct: 375 MASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G      EL   M  +GC   V ++G L++GYCK  +I+ AL +   M   GI P  V
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNV 494

Query: 340 TYNT 343
            YNT
Sbjct: 495 IYNT 498



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 167/334 (50%), Gaps = 12/334 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLF-KRLNSI-GLFPDLYTYNILINCFCKMGRVSPGF 72
           P V + N +   L K+      L+   +R++S+ G  P+  TYN LI+ FC++G +S  +
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLIN 130
            ++ ++       + VT  +++ GLC   R   A   F + R      K +  TY+TL+ 
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVG 326

Query: 131 GLCRTGHTIVALNLF-EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            L  T +  +A+ LF E+M+ G+        PDAI Y T+  GL + G ++ A  +   M
Sbjct: 327 ALLHTNNVGMAMELFHEKMSEGH-------SPDAIMYFTMISGLTQAGRLEDACSMASSM 379

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           K+     D   Y  LI GFC     +EA  L  EM + G++P+V T+N +++  CK G  
Sbjct: 380 KEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDF 439

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
                LL  MI  G +P    + TL+ G+C  G+++ A  +  SM+ +G   +   Y  L
Sbjct: 440 AAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTL 499

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+  CK  +++ A+ L+ EM  K +   V T+N 
Sbjct: 500 IDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNA 533



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 136/302 (45%), Gaps = 12/302 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYNILINCFCKMGRVS 69
           P  + + N + G L +       L  F+   ++  +P+      TY+ L+        V 
Sbjct: 278 PQNIVTLNTIVGGLCRAGRTGAALEFFREKRTV--WPEGKGNAVTYSTLVGALLHTNNVG 335

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +    +    +PDA+ + ++I GL    R+ +A ++ + ++  G K D   Y  LI
Sbjct: 336 MAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILI 395

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G CR      A  L +EM     E G+  +PD  TY+T+  G CK G      EL  KM
Sbjct: 396 AGFCRKKRLHEAYELLQEMK----EVGI--RPDVCTYNTLLSGSCKAGDFAAVDELLGKM 449

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            D+   P V+T+ +L+ G+C     +EA  +   M + G+ PN V +N +++ LCK G +
Sbjct: 450 IDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDV 509

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  L + M +  V  + + +N L+ G        +A EL   M    C  D  +  +L
Sbjct: 510 DLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVL 569

Query: 310 IN 311
           + 
Sbjct: 570 ME 571



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 141/301 (46%), Gaps = 50/301 (16%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC---KPDVFTYTTLINGLCRTGHTIVAL 142
           D   F S++  L     +   A ++  ++  GC   +PDV TY  L+NGLC+ G    AL
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQ--GCASVRPDVVTYGILVNGLCKAGRVGDAL 192

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN---PDVV 199
            + + M+  + +     +PD +T +T+ DGLCK G V +A   F++ +  +++   P+ V
Sbjct: 193 RVLDGMSRQDLDI----RPDVVTLNTVVDGLCKSGRVQEALA-FVEQRMSSVHGCPPNTV 247

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA------- 252
           TY  LI  FC   + + A  L  +M ++GV  N+VT N I+  LC+ G+   A       
Sbjct: 248 TYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREK 307

Query: 253 --------------SRLLELMIQI----------------GVRPDASVYNTLMDGFCLTG 282
                         S L+  ++                  G  PDA +Y T++ G    G
Sbjct: 308 RTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAG 367

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           R+  A  +  SM+  G   D  +Y ILI G+C+ K +  A  L  EM   GIRP V TYN
Sbjct: 368 RLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYN 427

Query: 343 T 343
           T
Sbjct: 428 T 428



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 129/285 (45%), Gaps = 6/285 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++ L G L    +    + LF    S G  PD   Y  +I+   + GR+     +   +
Sbjct: 320 TYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSM 379

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
             + F  D   +  LI G C + R+ EA  L  +++  G +PDV TY TL++G C+ G  
Sbjct: 380 KEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDF 439

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
                L  +M +        C+P  IT+ T+  G CK G +D+A  +   M +  I+P+ 
Sbjct: 440 AAVDELLGKMIDDG------CQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNN 493

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V Y +LI   C   D + A  LF EM ++ V  NV TFN ++  L      ++A  L++ 
Sbjct: 494 VIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQ 553

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           M +    PD    + LM+   + G  +R K      E     R V
Sbjct: 554 MREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQGEHTASKRIV 598



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 53/124 (42%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L     K    D  L + + ++  G+ P+   YN LI+  CK G V     +
Sbjct: 456 PSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIEL 515

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       +  TF +L+KGL  ++   +A  L  ++R   C PD  T   L+  L  
Sbjct: 516 FDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPV 575

Query: 135 TGHT 138
            G T
Sbjct: 576 IGET 579


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 170/364 (46%), Gaps = 38/364 (10%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V +FN +   LA+ +    +  ++  +     + PD+ TY IL+N  CK GRV     VL
Sbjct: 136 VFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVL 195

Query: 76  GRILRSCFT--PDAVTFTSLIKGLCAESRIMEAAALFTKLR---AFGCKPDVFTYTTLIN 130
             + R      PD VT  +++ GLC   R+ EA A F + R     GC P+  TY  LI+
Sbjct: 196 DGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALA-FVEQRMSSVHGCPPNTVTYNCLID 254

Query: 131 GLCRTGHTIVALNLFEEMANG---------NGEFGVVC---------------------- 159
             CR G+  +A  L E+M N          N   G +C                      
Sbjct: 255 AFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEG 314

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           K +A+TYST+   L     V  A ELF +   E  +PD + Y ++I G   A    +A  
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACS 374

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +   M + G + +   +N+++   C+  ++ EA  LL+ M ++G+RPD   YNTL+ G C
Sbjct: 375 MASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G      EL   M  +GC   V ++G L++GYCK  +I+ AL +   M   GI P  V
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNV 494

Query: 340 TYNT 343
            YNT
Sbjct: 495 IYNT 498



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 167/334 (50%), Gaps = 12/334 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLF-KRLNSI-GLFPDLYTYNILINCFCKMGRVSPGF 72
           P V + N +   L K+      L+   +R++S+ G  P+  TYN LI+ FC++G +S  +
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLIN 130
            ++ ++       + VT  +++ GLC   R   A   F + R      K +  TY+TL+ 
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVG 326

Query: 131 GLCRTGHTIVALNLF-EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            L  T +  +A+ LF E+M+ G+        PDAI Y T+  GL + G ++ A  +   M
Sbjct: 327 ALLHTNNVGMAMELFHEKMSEGH-------SPDAIMYFTMISGLTQAGRLEDACSMASSM 379

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           K+     D   Y  LI GFC     +EA  L  EM + G++P+V T+N +++  CK G  
Sbjct: 380 KEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDF 439

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
                LL  MI  G +P    + TL+ G+C  G+++ A  +  SM+ +G   +   Y  L
Sbjct: 440 AAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTL 499

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+  CK  +++ A+ L+ EM  K +   V T+N 
Sbjct: 500 IDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNA 533



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 136/302 (45%), Gaps = 12/302 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYNILINCFCKMGRVS 69
           P  + + N + G L +       L  F+   ++  +P+      TY+ L+        V 
Sbjct: 278 PQNIVTLNTIVGGLCRAGRTGAALEFFREKRTV--WPEGKGNAVTYSTLVGALLHTNNVG 335

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +    +    +PDA+ + ++I GL    R+ +A ++ + ++  G K D   Y  LI
Sbjct: 336 MAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILI 395

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
            G CR      A  L +EM     E G+  +PD  TY+T+  G CK G      EL  KM
Sbjct: 396 AGFCRKKRLHEAYELLQEMK----EVGI--RPDVCTYNTLLSGSCKAGDFAAVDELLGKM 449

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            D+   P V+T+ +L+ G+C     +EA  +   M + G+ PN V +N +++ LCK G +
Sbjct: 450 IDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDV 509

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  L + M +  V  + + +N L+ G        +A EL   M    C  D  +  +L
Sbjct: 510 DLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVL 569

Query: 310 IN 311
           + 
Sbjct: 570 ME 571



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 141/301 (46%), Gaps = 50/301 (16%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC---KPDVFTYTTLINGLCRTGHTIVAL 142
           D   F S++  L     +   A ++  ++  GC   +PDV TY  L+NGLC+ G    AL
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQ--GCASVRPDVVTYGILVNGLCKAGRVGDAL 192

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN---PDVV 199
            + + M+  + +     +PD +T +T+ DGLCK G V +A   F++ +  +++   P+ V
Sbjct: 193 RVLDGMSRQDLDI----RPDVVTLNTVVDGLCKSGRVQEALA-FVEQRMSSVHGCPPNTV 247

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA------- 252
           TY  LI  FC   + + A  L  +M ++GV  N+VT N I+  LC+ G+   A       
Sbjct: 248 TYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREK 307

Query: 253 --------------SRLLELMIQI----------------GVRPDASVYNTLMDGFCLTG 282
                         S L+  ++                  G  PDA +Y T++ G    G
Sbjct: 308 RTVWPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAG 367

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           R+  A  +  SM+  G   D  +Y ILI G+C+ K +  A  L  EM   GIRP V TYN
Sbjct: 368 RLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYN 427

Query: 343 T 343
           T
Sbjct: 428 T 428



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 129/285 (45%), Gaps = 6/285 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++ L G L    +    + LF    S G  PD   Y  +I+   + GR+     +   +
Sbjct: 320 TYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSM 379

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
             + F  D   +  LI G C + R+ EA  L  +++  G +PDV TY TL++G C+ G  
Sbjct: 380 KEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDF 439

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
                L  +M +        C+P  IT+ T+  G CK G +D+A  +   M +  I+P+ 
Sbjct: 440 AAVDELLGKMIDDG------CQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNN 493

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V Y +LI   C   D + A  LF EM ++ V  NV TFN ++  L      ++A  L++ 
Sbjct: 494 VIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQ 553

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           M +    PD    + LM+   + G  +R K      E     R V
Sbjct: 554 MREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQGEHTASKRIV 598



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 53/124 (42%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F  L     K    D  L + + ++  G+ P+   YN LI+  CK G V     +
Sbjct: 456 PSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIEL 515

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       +  TF +L+KGL  ++   +A  L  ++R   C PD  T   L+  L  
Sbjct: 516 FDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPV 575

Query: 135 TGHT 138
            G T
Sbjct: 576 IGET 579


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 170/372 (45%), Gaps = 31/372 (8%)

Query: 3   IFDYMLRMHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           ++D  L M      P V ++N +   L ++   +     F  + ++GL PD+ TYN L+N
Sbjct: 294 VYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLN 353

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK G +    ++ G + R+   P  +T+   I G C    + EA  L  ++   GC P
Sbjct: 354 GYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLP 413

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE---------------FGVVCKP---- 161
           +V TYT L+ G        +A   F+EM +   +                G + +     
Sbjct: 414 NVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELR 473

Query: 162 ----------DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                     D +TY+ +  GLCK G +  AKEL +KM    + PD +TYT LI   C  
Sbjct: 474 EVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCER 533

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
               EA+ +F  M+  G+ P+ VTF VI++  C+ G +  A      M++ GV P+   Y
Sbjct: 534 GLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITY 593

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N L+   C  GR   A   F  M   G + + ++Y +LI+G CK    E A+  Y EM  
Sbjct: 594 NVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQ 653

Query: 332 KGIRPTVVTYNT 343
            GI P  +T+  
Sbjct: 654 NGIHPDYLTHKA 665



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 157/327 (48%), Gaps = 12/327 (3%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           P+ +  +  GC+ K      V  L   + + G+ P + TYN +I+   + G V    V  
Sbjct: 280 PLITGLLARGCVKK------VYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKF 333

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             +      PD +T+ SL+ G C    + EA  LF  LR  G  P V TY   I+G CR 
Sbjct: 334 AEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRL 393

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           G    A  L EEM    GE G  C P+  TY+ +  G      +  A+E F +M  + + 
Sbjct: 394 GDLEEARILKEEM----GEQG--CLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQ 447

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PD   Y + I       D   A  L   +M +G+  + VT+N++++ LCK G + +A  L
Sbjct: 448 PDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKEL 507

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M+  G++PD   Y  L+   C  G +  A+++F +M S+G +    ++ ++I+ YC+
Sbjct: 508 QMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCR 567

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
              +  A   + +ML +G+ P  +TYN
Sbjct: 568 RGNLYSAYGWFRKMLEEGVEPNEITYN 594



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 155/324 (47%), Gaps = 13/324 (4%)

Query: 26  CLAKNKHYDTV----LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           C A++   DT     LS F+ + S G+ PD+   N ++       R      V   +L+ 
Sbjct: 139 CKARDATLDTCSTLCLSAFREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQL 198

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGLCRTGHTI 139
              P  VT+ +L+     E R  + A L  ++  R  GC P+  TY  +I GL R G   
Sbjct: 199 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 258

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L E M        +  K  + TY+ +  GL   G V K  +L L+M++E I P VV
Sbjct: 259 EAAELVEGMR-------LSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVV 311

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY ++I G   +     A+  F EM   G+ P+V+T+N ++N  CK G + EA  L   +
Sbjct: 312 TYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDL 371

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + G+ P    YN  +DG+C  G +  A+ L   M   GC+ +V +Y IL+ G      +
Sbjct: 372 RRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSL 431

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A   + EMLSKG++P    YNT
Sbjct: 432 AMAREFFDEMLSKGLQPDCFAYNT 455



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 162/334 (48%), Gaps = 9/334 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V   N +   L     +D + ++ + +  +G+ P + TYN L++ F K GR   
Sbjct: 163 HGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKEGRKDK 222

Query: 71  GFVVLGRILR--SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
             ++L  +    S   P+ VT+  +I GL  +  + EAA L   +R    K   FTY  L
Sbjct: 223 VAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMR-LSKKASSFTYNPL 281

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I GL   G      +L  EM N     G++  P  +TY+ +  GL + G V+ A+  F +
Sbjct: 282 ITGLLARGCVKKVYDLQLEMENE----GIM--PTVVTYNAMIHGLLQSGLVEAAQVKFAE 335

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M+   + PDV+TY SL+ G+C A +  EA  LF ++   G+ P V+T+N+ ++  C+ G 
Sbjct: 336 MRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGD 395

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           ++EA  L E M + G  P+   Y  LM G      +  A+E F  M S G   D F+Y  
Sbjct: 396 LEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNT 455

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            I       +I  AL L   ++ +GI    VTYN
Sbjct: 456 RICAELILGDIARALELREVLMLEGISSDTVTYN 489


>gi|255661020|gb|ACU25679.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 376

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/324 (32%), Positives = 169/324 (52%), Gaps = 6/324 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V SFNI+   L  N   D V+ +++ +   G   D  TY IL++ FCK G V+    VL 
Sbjct: 59  VASFNIMMRGLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLE 118

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
                    DA  ++++I GLC +S++ +A ++   +   GCKP+   Y  LINGL  + 
Sbjct: 119 IAEMKGGVLDAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSS 178

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ +F+EM + +      C P  ITY+T+ +GLCK     +A +L  +M ++  NP
Sbjct: 179 KFEDAIRVFQEMGSTH------CSPTIITYNTLINGLCKGERFGEAYDLVKEMLEKGWNP 232

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            V+TY+ LI+G C  +    A  L+ ++  +G +P++   N++++ LC  GKM  A  L 
Sbjct: 233 CVITYSMLIKGLCLCHKVEMALQLWYQVTSKGFKPDIQMHNILIHGLCSVGKMQLALSLY 292

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M      P+   +NTLM+GF   G V  A  ++  +  NG   D+ SY I + G C  
Sbjct: 293 FDMNHWNCAPNLVTHNTLMEGFYKDGDVRNALVIWARILRNGLQPDIISYNITLKGLCSC 352

Query: 317 KEIEGALSLYSEMLSKGIRPTVVT 340
             I GA+    + L+K I PT++T
Sbjct: 353 NRISGAILFLHDALTKKIVPTIIT 376



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 163/322 (50%), Gaps = 18/322 (5%)

Query: 33  YDTVLSLFKRLNSIGLFPDLY------------TYNILINCFCKMGRVSPGFVVLGRILR 80
           Y+T+L+ F R+  I    +L+            ++NI++      G+V    ++   + +
Sbjct: 28  YNTMLNGFFRVGRIKDCFELWELMGKEGSRNVASFNIMMRGLFNNGKVDEVILIWELMKK 87

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
           S F  D++T+  L+ G C    + ++  +       G   D F Y+ +INGLC+      
Sbjct: 88  SGFVEDSITYGILVHGFCKNGDVNKSLHVLEIAEMKGGVLDAFAYSAMINGLCKDSKLDK 147

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A+++       NG     CKP+A  Y+ + +GL      + A  +F +M   + +P ++T
Sbjct: 148 AVSVL------NGMIKSGCKPNAHVYNALINGLVGSSKFEDAIRVFQEMGSTHCSPTIIT 201

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y +LI G C    + EA  L  EM+++G  P V+T+++++  LC   K++ A +L   + 
Sbjct: 202 YNTLINGLCKGERFGEAYDLVKEMLEKGWNPCVITYSMLIKGLCLCHKVEMALQLWYQVT 261

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             G +PD  ++N L+ G C  G++  A  L+  M    C  ++ ++  L+ G+ K+ ++ 
Sbjct: 262 SKGFKPDIQMHNILIHGLCSVGKMQLALSLYFDMNHWNCAPNLVTHNTLMEGFYKDGDVR 321

Query: 321 GALSLYSEMLSKGIRPTVVTYN 342
            AL +++ +L  G++P +++YN
Sbjct: 322 NALVIWARILRNGLQPDIISYN 343



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 155/312 (49%), Gaps = 11/312 (3%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D    ++K +    L  D   YN ++N F ++GR+   F  L  ++    + +  +F  +
Sbjct: 7   DGAEMVYKDIVESKLSLDAVVYNTMLNGFFRVGRIKDCFE-LWELMGKEGSRNVASFNIM 65

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE--EMANG 151
           ++GL    ++ E   ++  ++  G   D  TY  L++G C+ G    +L++ E  EM  G
Sbjct: 66  MRGLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLEIAEMKGG 125

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                     DA  YS + +GLCK+  +DKA  +   M      P+   Y +LI G   +
Sbjct: 126 --------VLDAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGS 177

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           + + +A  +F EM      P ++T+N ++N LCK  +  EA  L++ M++ G  P    Y
Sbjct: 178 SKFEDAIRVFQEMGSTHCSPTIITYNTLINGLCKGERFGEAYDLVKEMLEKGWNPCVITY 237

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           + L+ G CL  +V  A +L+  + S G   D+  + ILI+G C   +++ ALSLY +M  
Sbjct: 238 SMLIKGLCLCHKVEMALQLWYQVTSKGFKPDIQMHNILIHGLCSVGKMQLALSLYFDMNH 297

Query: 332 KGIRPTVVTYNT 343
               P +VT+NT
Sbjct: 298 WNCAPNLVTHNT 309



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G +D A+ ++  + +  ++ D V Y +++ GF       +   L+ E+M +    NV
Sbjct: 1   CESGDIDGAEMVYKDIVESKLSLDAVVYNTMLNGFFRVGRIKDCFELW-ELMGKEGSRNV 59

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            +FN++M  L  NGK+DE   + ELM + G   D+  Y  L+ GFC  G VN++  +   
Sbjct: 60  ASFNIMMRGLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLEI 119

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            E  G + D F+Y  +ING CK+ +++ A+S+ + M+  G +P    YN 
Sbjct: 120 AEMKGGVLDAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNA 169



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M   H SP  + ++N L   L K + +     L K +   G  P + TY++LI   
Sbjct: 186 VFQEMGSTHCSPT-IITYNTLINGLCKGERFGEAYDLVKEMLEKGWNPCVITYSMLIKGL 244

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   +V     +  ++    F PD      LI GLC+  ++  A +L+  +  + C P++
Sbjct: 245 CLCHKVEMALQLWYQVTSKGFKPDIQMHNILIHGLCSVGKMQLALSLYFDMNHWNCAPNL 304

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+ TL+ G  + G    AL ++  +   NG      +PD I+Y+    GLC    +  A
Sbjct: 305 VTHNTLMEGFYKDGDVRNALVIWARILR-NG-----LQPDIISYNITLKGLCSCNRISGA 358

Query: 183 KELFLKMKDENINPDVVT 200
                    + I P ++T
Sbjct: 359 ILFLHDALTKKIVPTIIT 376


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 177/344 (51%), Gaps = 16/344 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKN---KHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           +F +M    P  P   ++N L   L +    +H    LSL  R    G  PD +T+N LI
Sbjct: 115 LFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVR---SGWRPDAFTFNSLI 171

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
             +C+  ++     +  ++    F+ DAV++ +LI+G C   R+ EA  LF +L     +
Sbjct: 172 LGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELE----Q 227

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD++T+  L+ GLC        L + ++M     E G   +P    Y+ + D  C+E   
Sbjct: 228 PDMYTHAALVKGLCDARRGEEGLYMLQKMK----ELG--WRPATRAYAALVDLWCREQKA 281

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           ++A+++  +M D  + P  VT T+++  +C     + A  +F  M  +G +PNV T+N +
Sbjct: 282 EEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAM 341

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +   C  GK+ +A  LL+ M + GV PD   YN L+ G C+ G +  A  L   ME NG 
Sbjct: 342 VQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGL 401

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             D ++Y +LI+  CK  +++ A SL+  +  +GIRP  VT+NT
Sbjct: 402 AADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNT 445



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 161/328 (49%), Gaps = 10/328 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L     + +  D    LF ++   G   D  +Y  LI  FC+ GRV      
Sbjct: 162 PDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEAL-- 219

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R    PD  T  +L+KGLC   R  E   +  K++  G +P    Y  L++  CR
Sbjct: 220 --ELFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCR 277

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +  EM +     G+V  P A+T + + +  C+EG +  A  +F  MK +  
Sbjct: 278 EQKAEEAEKMLNEMFDN----GLV--PCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGC 331

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY ++++GFC      +A  L  +M + GV+P+VVT+N+++   C +G ++ A R
Sbjct: 332 EPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFR 391

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL LM   G+  D   YN L+D  C TG+V+ A  LF  +E  G   +  ++  +ING C
Sbjct: 392 LLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLC 451

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K  + + A +   +M+S G  P   TY+
Sbjct: 452 KGGKFDVACTFLEKMVSAGCAPDTYTYS 479



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 153/324 (47%), Gaps = 10/324 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L     +    D  L LF+ L      PD+YT+  L+   C   R   G  +L ++
Sbjct: 201 SYAALIEGFCETGRVDEALELFRELEQ----PDMYTHAALVKGLCDARRGEEGLYMLQKM 256

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
               + P    + +L+   C E +  EA  +  ++   G  P   T T ++N  CR G  
Sbjct: 257 KELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRM 316

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+ +FE M          C+P+  TY+ +  G C  G V KA  L  +M++  + PDV
Sbjct: 317 SGAVRVFESMKLKG------CEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDV 370

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY  LIRG C       A  L   M   G+  +  T+NV+++ LCK GK+DEA  L + 
Sbjct: 371 VTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDG 430

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           +   G+RP++  +NT+++G C  G+ + A      M S GC  D ++Y   I   CK K 
Sbjct: 431 LEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKG 490

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
               LS   EML K ++P+ V Y 
Sbjct: 491 SREGLSFIDEMLQKDVKPSTVNYT 514



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 151/306 (49%), Gaps = 6/306 (1%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            + +F+ +   G  P+++TYN ++  FC +G+V     +L ++      PD VT+  LI+
Sbjct: 319 AVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIR 378

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
           G C +  I  A  L   +   G   D +TY  LI+ LC+TG    A +LF+ +     E+
Sbjct: 379 GQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGL-----EY 433

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
             + +P+++T++T+ +GLCK G  D A     KM      PD  TY+  I   C      
Sbjct: 434 RGI-RPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSR 492

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           E      EM+ + V+P+ V + ++++ L K      A+R+   M+ +G  PD   Y T +
Sbjct: 493 EGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSV 552

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
             +C  GR++ A+ + + M+  G + D  +Y  LI+G+    + + A+++   M      
Sbjct: 553 RAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASM 612

Query: 336 PTVVTY 341
           P   T+
Sbjct: 613 PNHFTF 618



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 153/331 (46%), Gaps = 10/331 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     + +  +    +   +   GL P   T   ++N +C+ GR+S    V
Sbjct: 263 PATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRV 322

Query: 75  LGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
              + L+ C  P+  T+ ++++G C   ++ +A AL  ++R  G +PDV TY  LI G C
Sbjct: 323 FESMKLKGC-EPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQC 381

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             GH   A  L   M  GNG        D  TY+ + D LCK G VD+A  LF  ++   
Sbjct: 382 IDGHIESAFRLLRLM-EGNG-----LAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRG 435

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIE-MMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           I P+ VT+ ++I G C    ++ A C F+E M+  G  P+  T++  +  LCK     E 
Sbjct: 436 IRPNSVTFNTVINGLCKGGKFDVA-CTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREG 494

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
              ++ M+Q  V+P    Y  ++D          A  ++  M S GC  DV +Y   +  
Sbjct: 495 LSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRA 554

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           YC    +  A ++  EM   GI    + YNT
Sbjct: 555 YCNEGRLHEAENVVMEMKKGGIIVDAMAYNT 585



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 146/340 (42%), Gaps = 22/340 (6%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N+L   L K    D   SLF  L   G+ P+  T+N +IN  CK G+       L ++
Sbjct: 407 TYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKM 466

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           + +   PD  T++  I+ LC      E  +   ++     KP    YT +I+ L +  + 
Sbjct: 467 VSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNY 526

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
            +A  ++ +M +      + C PD +TY+T     C EG + +A+ + ++MK   I  D 
Sbjct: 527 GLATRIWGQMVS------LGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDA 580

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM----------------NE 242
           + Y +LI G       + A  +   M      PN  TF +++                  
Sbjct: 581 MAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTS 640

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           + K  ++ +   L ELM +  V   A  Y  +++GF    R++    L   M+ +    +
Sbjct: 641 VWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLN 700

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              Y  L+N +CK +    A +L   M+  G  P +++Y 
Sbjct: 701 EDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQ 740



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 143/378 (37%), Gaps = 57/378 (15%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN +   L K   +D   +  +++ S G  PD YTY+  I   CK      G   
Sbjct: 438 PNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSF 497

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L+    P  V +T +I  L  E     A  ++ ++ + GC PDV TYTT +   C 
Sbjct: 498 IDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCN 557

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK----------- 183
            G    A N+  EM  G    G++   DA+ Y+T+ DG    G  D A            
Sbjct: 558 EGRLHEAENVVMEMKKG----GIIV--DAMAYNTLIDGHTSIGKTDHAVTILKHMTGVAS 611

Query: 184 ----------------------------------------ELFLKMKDENINPDVVTYTS 203
                                                   ELF  MK  ++      Y +
Sbjct: 612 MPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLA 671

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           ++ GF      +E   L   M +  +  N   +  ++N  CK     +A  LL  MI  G
Sbjct: 672 ILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHG 731

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
             P+   Y  L+ GF   G+ +RAKE+F  +       D   + I+I+G  +    +   
Sbjct: 732 FLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCH 791

Query: 324 SLYSEMLSKGIRPTVVTY 341
            + S +     +P+  TY
Sbjct: 792 DMISILEQMKCKPSDETY 809



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/313 (17%), Positives = 114/313 (36%), Gaps = 57/313 (18%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ I+   L K ++Y     ++ ++ S+G  PD+ TY   +  +C  GR+     V
Sbjct: 508 PSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENV 567

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY--------- 125
           +  + +     DA+ + +LI G  +  +   A  +   +      P+ FT+         
Sbjct: 568 VMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQ 627

Query: 126 -------TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
                        + +T        LFE M   +          A  Y  I +G  +E  
Sbjct: 628 RRLAEDVPLKTTSVWKTIELADVFELFELMKKNS------VPSSARAYLAILEGFSEERR 681

Query: 179 VDKAKELFLKMKDENIN-----------------------------------PDVVTYTS 203
           +D+   L   MK++++                                    P++++Y  
Sbjct: 682 LDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQY 741

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+ GF      + AK +F  +  +    + + + +I++ L + G  D    ++ ++ Q+ 
Sbjct: 742 LLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMK 801

Query: 264 VRPDASVYNTLMD 276
            +P    Y  L +
Sbjct: 802 CKPSDETYAMLTE 814


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 174/327 (53%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+NIL   L      +  L     + + G+ PD+ TYNIL N F  +G +S  + V
Sbjct: 303 PDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKV 362

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + R+L +   PD VT+T LI G C    I E+  L  K+ + G K  + TYT L++ LC+
Sbjct: 363 VQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCK 422

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A+ L  EM        +  KPD +TYS +  GLCK G V++A EL+ +M  + I
Sbjct: 423 SGRIDEAVILLHEME------VIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRI 476

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+    +++I G       +EA+  F  +    V   ++ +N++++   K G + EA R
Sbjct: 477 YPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVR 536

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + +I+ G+ P    +N+L+ GFC  G++  A +L  +++ +G +    +Y  L+NGYC
Sbjct: 537 SYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYC 596

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  ++     +  EM +K I+PT +TY
Sbjct: 597 EEGDMHSMFDMLHEMEAKAIKPTQITY 623



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 169/348 (48%), Gaps = 41/348 (11%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
           +H D +  ++  + + G+  + YT  ILI+  C+  R+      L       F P  V+F
Sbjct: 214 RHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSF 273

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
            +L+ G C    +  A + F  +  +G  PDV++Y  L++GLC  G    AL    +M N
Sbjct: 274 NALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMEN 333

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
              E      PD +TY+ + +G    G +  A ++  +M    +NPD+VTYT LI G C 
Sbjct: 334 HGVE------PDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQ 387

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
             +  E+  L  +M+ QG++ ++VT+ V+++ LCK+G++DEA  LL  M  IG++PD   
Sbjct: 388 MGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLT 447

Query: 271 YNTLMDGFCLTGRVNRAKEL-----------------------------------FVSME 295
           Y+ L+ G C  G V  A EL                                   F S+ 
Sbjct: 448 YSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVT 507

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +    ++  Y I+I+GY K   I  A+  Y +++ KGI PT+VT+N+
Sbjct: 508 KSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNS 555



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 141/286 (49%), Gaps = 6/286 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           ++  YNI+I+ + K+G +        +I+    +P  VTF SLI G C + ++ EA  L 
Sbjct: 514 EIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLL 573

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
             ++  G  P   TYTTL+NG C  G      ++  EM           KP  ITY+ + 
Sbjct: 574 DTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEME------AKAIKPTQITYTVVV 627

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
            GLCKEG + ++ +L   M    + PD +TY ++I+ FC A+D  +A  L  +M+   +Q
Sbjct: 628 KGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQ 687

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+ VT+NV++N LC  G + +A RLL  +    +R     Y T++   C  G V  A   
Sbjct: 688 PSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVF 747

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           F  M   G    +  Y  +IN  CK   I  A   +  ML+ GI P
Sbjct: 748 FHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPP 793



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 162/327 (49%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++ +L   L K+   D  + L   +  IGL PDL TY++LI+  CK G V     +  
Sbjct: 410 IVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYE 469

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P++   +++I GL  +  I EA   F  +       ++  Y  +I+G  + G
Sbjct: 470 EMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLG 529

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
           +   A+  ++++     E G+   P  +T++++  G CK+G + +A +L   +K   + P
Sbjct: 530 NIGEAVRSYKQII----EKGI--SPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVP 583

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
             VTYT+L+ G+C   D +    +  EM  + ++P  +T+ V++  LCK G++ E+ +LL
Sbjct: 584 TSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLL 643

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M   G+ PD   YNT++  FC    + +A +L   M  +       +Y +LING C  
Sbjct: 644 KYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVY 703

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++ A  L   +  + IR T V Y T
Sbjct: 704 GNLKDADRLLVTLQDQSIRLTKVAYTT 730



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 6/280 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN L     K       + L   +   GL P   TY  L+N +C+ G +   F +
Sbjct: 548 PTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDM 607

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P  +T+T ++KGLC E R+ E+  L   + A G  PD  TY T+I   C+
Sbjct: 608 LHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCK 667

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L  +M   +       +P  +TY+ + +GLC  G +  A  L + ++D++I
Sbjct: 668 AHDLQKAFQLHNQMLQHS------LQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSI 721

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               V YT++I+  C   D   A   F +M+++G + ++  ++ ++N LCK   + +A  
Sbjct: 722 RLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKF 781

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
              +M+  G+ PD  +   +++ F  +G  N   E+F  M
Sbjct: 782 FFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMM 821



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 147/318 (46%), Gaps = 6/318 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +NI+    AK  +    +  +K++   G+ P + T+N LI  FCK G+++    +L  I 
Sbjct: 518 YNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIK 577

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P +VT+T+L+ G C E  +     +  ++ A   KP   TYT ++ GLC+ G   
Sbjct: 578 VHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLH 637

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            ++ L + M    G F     PD ITY+T+    CK   + KA +L  +M   ++ P  V
Sbjct: 638 ESVQLLKYMY-ARGLF-----PDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPV 691

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY  LI G C   +  +A  L + + DQ ++   V +  I+   C  G +  A      M
Sbjct: 692 TYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQM 751

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           ++ G       Y+ +++  C    +  AK  F  M ++G   D     +++N + ++ + 
Sbjct: 752 VERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDP 811

Query: 320 EGALSLYSEMLSKGIRPT 337
                +++ M+  G+ P 
Sbjct: 812 NSVFEIFAMMIKCGLLPV 829



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 113/281 (40%), Gaps = 45/281 (16%)

Query: 106 AAALFTKLR-AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN--GNGEFGVVCKP- 161
           A  LF  LR  +G +    ++  + + + R G +     +  +M    G+G    +C+  
Sbjct: 98  ALFLFDLLRNEYGFRHSRVSWFIVSHVVARKGQSKELRRVLNQMVEEEGSGSAPSLCELL 157

Query: 162 ---------DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS--------- 203
                    + + +  +     +   V  A  +  KMK  N+   + TY S         
Sbjct: 158 CNSFRDWDLNNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTD 217

Query: 204 -----------------------LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
                                  LI G C  +   +A     E   +   P+VV+FN +M
Sbjct: 218 IMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALM 277

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G +D A     +MI+ G+ PD   YN L+ G C+ G +  A E    ME++G  
Sbjct: 278 SGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVE 337

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            D+ +Y IL NG+     I GA  +   ML  G+ P +VTY
Sbjct: 338 PDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTY 378


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 169/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM+ +G++P+  T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G +P+VVT
Sbjct: 405 KEMQRDGYKPSVVT 418



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 155/285 (54%), Gaps = 6/285 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/252 (36%), Positives = 135/252 (53%), Gaps = 6/252 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K    +    L   + + G+ PD+YTY++LIN  CK  ++    V+
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P+ VTFT+LI G C   R+  A  ++ ++ +    PD+ TY TLI GLC+
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L +EM           KPD  TY+T+ DG CKEG ++ A E   +M  ENI
Sbjct: 289 KGDLKQAQDLIDEMIMKG------LKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENI 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V YT+LI G C      +A+ +  EM+  G++P + T+ +I+NE CK G +   S+
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSK 402

Query: 255 LLELMIQIGVRP 266
           LL+ M + G +P
Sbjct: 403 LLKEMQRDGYKP 414



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 133/252 (52%), Gaps = 6/252 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F  L+     E  I  A ++F  +  +G +P V ++ TL+NG  + G     LN    + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGD----LNEGFRLK 194

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           N     GV  +PD  TYS + +GLCKE  +D A  LF +M D+ + P+ VT+T+LI G C
Sbjct: 195 NAMQASGV--QPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L++ MI  G++PD  
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKF 312

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y TL+DG C  G +  A E    M       D  +Y  LI+G C+      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 330 LSKGIRPTVVTY 341
           LS G++P + TY
Sbjct: 373 LSVGLKPEIGTY 384



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 100/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +    + P VV++ +L+ G+    D NE   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM+ KG++P   TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTT 316



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+   K G++  A  + + + + G+RP    +NTLM+G+ 
Sbjct: 123 FYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +N    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  V
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+ M    P   ++  L     K    +T     KR+    +  D   Y  LI+  
Sbjct: 298 LIDEMI-MKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR      +L  +L     P+  T+T +I   C +  +   + L  +++  G KP V
Sbjct: 357 CQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSV 416

Query: 123 FT 124
            T
Sbjct: 417 VT 418


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 159/307 (51%), Gaps = 7/307 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           ++F  +   G+ PD  +Y ++   +C+MGR+S     L  ++R  F  D  T T +I   
Sbjct: 217 NVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTF 276

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C +         F K    G KP++  +T+LINGLC+ G    A  + EEM         
Sbjct: 277 CEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGW---- 332

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNE 216
             KP+  T++ + DGLCK+G+ +KA  LFLK+ + ++  P+V TYTS+I G+C  +  N 
Sbjct: 333 --KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNR 390

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A+ L   M +QG+ PN  T+  +++   K G  ++A  L++LM + G   +   YN  +D
Sbjct: 391 AEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFID 450

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
             C  GR   A +L       G   D  +Y ILI+  C+  +   AL  +S+M   G++P
Sbjct: 451 SLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQP 510

Query: 337 TVVTYNT 343
            + TYNT
Sbjct: 511 DMHTYNT 517



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 168/341 (49%), Gaps = 8/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F  FD  + +   P  + +F  L   L K         + + +   G  P++YT+  LI+
Sbjct: 286 FWYFDKWVELGLKPNLI-NFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALID 344

Query: 61  CFCKMGRVSPGFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
             CK G     F +  +++RS  + P+  T+TS+I G C E ++  A  L ++++  G  
Sbjct: 345 GLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLV 404

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+  TYT LI+G  + G+   A  L + M  G   F      +  TY+   D LCK+G  
Sbjct: 405 PNTKTYTCLIDGHSKAGNFEKAYELMDLM--GKEGFSA----NIFTYNAFIDSLCKKGRF 458

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            +A +L  K     +  D VTYT LI   C   D  EA   F +M   GVQP++ T+N +
Sbjct: 459 LEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTL 518

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +    +  +M+E+ +L    + +G+ P    Y +++ G+C    V+ A + F  M  +GC
Sbjct: 519 IAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGC 578

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             D  +YG LI+G CK  +++ A  LY  M+ KG+ P  VT
Sbjct: 579 TPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVT 619



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 152/332 (45%), Gaps = 9/332 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  ++R     P V ++  +     K    +    L  R+   GL P+  TY  LI+
Sbjct: 356 FRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLID 415

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K G     + ++  + +  F+ +  T+ + I  LC + R +EA  L  K    G + 
Sbjct: 416 GHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQA 475

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT LI+ LCR   T  AL  F +M      F    +PD  TY+T+     ++  ++
Sbjct: 476 DTVTYTILISELCRRADTREALVFFSKM------FKAGVQPDMHTYNTLIAAFSRQRRME 529

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           ++++LF +     + P   TYTS+I G+C   + + A   F  M D G  P+ +T+  ++
Sbjct: 530 ESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALI 589

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LCK  K+DEA +L E M+  G+ P      TL   +C       A  +   ++    +
Sbjct: 590 SGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDSATAMVILERLDKKLWI 649

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           R V     LI   C  +++  A+  + ++L K
Sbjct: 650 RTV---NTLIRKLCSERKVGMAVLFFHKLLDK 678



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 7/202 (3%)

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A N+F+EM         VC PD+++Y  +    C+ G +         M       D  T
Sbjct: 215 AENVFDEM-----RVRGVC-PDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNAT 268

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
            T +I  FC     +     F + ++ G++PN++ F  ++N LCK G + +A  +LE M+
Sbjct: 269 CTLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMV 328

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEI 319
           + G +P+   +  L+DG C  G   +A  LF+ +  S+    +V +Y  +I+GYCK  ++
Sbjct: 329 KKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKL 388

Query: 320 EGALSLYSEMLSKGIRPTVVTY 341
             A  L S M  +G+ P   TY
Sbjct: 389 NRAEMLLSRMKEQGLVPNTKTY 410



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/153 (20%), Positives = 64/153 (41%)

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           +EN          ++R F     + EA  + IEM + G+   V T N +     + G + 
Sbjct: 154 NENFERAHEVMDCMVRVFAEIGKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVG 213

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            A  + + M   GV PD+  Y  +   +C  GR++        M   G + D  +  ++I
Sbjct: 214 YAENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMI 273

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +C+          + + +  G++P ++ + +
Sbjct: 274 STFCEKGFASRVFWYFDKWVELGLKPNLINFTS 306


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 167/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LFE
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFE 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G V  A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYVPSVVT 418



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVXLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G +  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 99/178 (55%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KM++A+ L E M+  G+ P+   + TL+DG C  GRV 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVX 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 89/182 (48%)

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           D   +S +     + GF+  A E +   K+        T   ++        +      +
Sbjct: 65  DIYVFSGLIIAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            E ++ G   ++  FN++M+   K G++  A  + + + + G+RP    +NTLM+G+   
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G ++    L  +M+++G   DV++Y +LING CK  ++E A  L+ EML  G+ P  VT+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTF 244

Query: 342 NT 343
            T
Sbjct: 245 TT 246


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 175/338 (51%), Gaps = 6/338 (1%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y+ R   + P + + N +   L K +       LF  +   GL P + TYN LIN     
Sbjct: 140 YVFRRLRTLPALPACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQ 199

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G V+    V  +++     P+ VT+T++I  LC E  I +A  LF  ++  G +P+ +TY
Sbjct: 200 GTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTY 259

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
             L++G C+      A+ L++E+            P+A+ ++T+ DG CK     +AK +
Sbjct: 260 NVLMSGHCQRDDVNSAVVLYQELLKSG------LNPNAVIFTTLIDGFCKAKRFSEAKGM 313

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           FL+M    + P V  Y SL+ G   + +  EA  L+ EM   G+ P+  T ++++  LC 
Sbjct: 314 FLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCD 373

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G+M  A R L+ + + GV  +A+ YN L+D +C  G +  A      M   G   +V S
Sbjct: 374 GGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVS 433

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y  LI+G+ K  +++ A+++Y+EM++KGI P VVTY  
Sbjct: 434 YSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTA 471



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 183/418 (43%), Gaps = 86/418 (20%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D M+     P  V ++  +   L +         LF  +   G+ P+ YTYN+L++  
Sbjct: 208 VWDQMVAQQIDPN-VVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGH 266

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+   V+   V+   +L+S   P+AV FT+LI G C   R  EA  +F ++  FG  P V
Sbjct: 267 CQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTV 326

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMA-------------------------------NG 151
             Y +L++G  R+G+   AL L++EM                                 G
Sbjct: 327 PVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQG 386

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
             E GV    +A  Y+ + D  C+ G +++A     +M +  I P+VV+Y+SLI G    
Sbjct: 387 VQEDGV--NLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKR 444

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                A  ++ EM+ +G++PNVVT+  +++   KNG +D A RL + MI+ G+ P+A   
Sbjct: 445 GKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITV 504

Query: 272 NTLMDGFCLTGRVNRA-------------------------------------------- 287
           + L+DG C   RV  A                                            
Sbjct: 505 SVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLY 564

Query: 288 --------KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
                    +LF  M  +G + D F+Y +LI G C    +  A+ LY++M+  G++PT
Sbjct: 565 LDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKPT 622


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 169/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM+ +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYMPSVVT 418



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 159/292 (54%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G M  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 133/252 (52%), Gaps = 6/252 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F  L+     E  I  A ++F  +  +G +P V ++ TL+NG  + G     LN    + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGD----LNEGFRLK 194

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           N     GV  +PD  TYS + +GLCKE  +D A  LF +M D+ + P+ VT+T+LI G C
Sbjct: 195 NAMQASGV--QPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L++ MI  G++PD  
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKI 312

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y TL+DG C  G +  A E    M       D  +Y  LI+G C+      A  +  EM
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 330 LSKGIRPTVVTY 341
           LS G++P + TY
Sbjct: 373 LSVGLKPEIGTY 384



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +    + P VV++ +L+ G+    D NE   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM+ KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTT 316



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+   K G++  A  + + + + G+RP    +NTLM+G+ 
Sbjct: 123 FYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +N    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  V
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 165/342 (48%), Gaps = 9/342 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R H      C +N L     + K+   V  + K + S G+ P + TY IL++  
Sbjct: 155 LLDEMPR-HGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVGTYTILVDGL 213

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +S    V   I R     D   ++++I   C    +  A+ +F +    G +P+ 
Sbjct: 214 STAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNE 273

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            TY  LING C+ G    A  L  +M   G G        + I ++T+ DG C+ G VDK
Sbjct: 274 RTYGALINGFCKIGQIEAAEMLLTDMQLRGVGH-------NQIIFNTMIDGYCRHGMVDK 326

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A E+   M+   I  DV TY +L  G C  N   +AK L   M + GV+ N V++  +++
Sbjct: 327 ALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLIS 386

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
              K G M EA RL   M   G RP    YN ++DG+  +G +  A+     ME  G + 
Sbjct: 387 IHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVP 446

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           DV++Y  L++G+C N +++ AL L+ EM  +G +P VV Y  
Sbjct: 447 DVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTA 488



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 163/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL   L+       V S+F  +    +  D+Y Y+ +IN +C+ G V     V
Sbjct: 201 PTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEV 260

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               + +   P+  T+ +LI G C   +I  A  L T ++  G   +   + T+I+G CR
Sbjct: 261 FDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCR 320

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL +   M       G+  + D  TY+T+  GLC+   ++ AK+L   M +  +
Sbjct: 321 HGMVDKALEIKAVMER----MGI--QLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGV 374

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + V+YT+LI       D  EA+ LF +M  +G +P+VVT+NV+++   K+G + EA R
Sbjct: 375 ESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAER 434

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + M + G+ PD   Y  L+ G C+ G+V+ A  LF  M+  G   +V +Y  LI+G  
Sbjct: 435 FKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLA 494

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K    E A   Y  ML+ G+ P    Y+
Sbjct: 495 KEGRSEEAFQFYDNMLAAGLTPDDTLYS 522



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 145/289 (50%), Gaps = 6/289 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           + +++++ FCK GR+     +L  + R     +A  +  L+     +      A +  ++
Sbjct: 135 SASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEM 194

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
            + G +P V TYT L++GL   G      ++F+E+   N         D   YS + +  
Sbjct: 195 ESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKN------VAGDVYFYSAVINAY 248

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G V +A E+F +     I P+  TY +LI GFC       A+ L  +M  +GV  N 
Sbjct: 249 CRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQ 308

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           + FN +++  C++G +D+A  +  +M ++G++ D   YNTL  G C   R+  AK+L   
Sbjct: 309 IIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHI 368

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M  NG   +  SY  LI+ + K  ++  A  L+ +M  KG RP+VVTYN
Sbjct: 369 MTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYN 417



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 140/281 (49%), Gaps = 11/281 (3%)

Query: 66  GRVSPGFVVLGRILRSC---FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           G + P   +L + L SC    TP  ++ + ++ G C   R+ +A  L  ++   G K + 
Sbjct: 111 GHLLPAAELLRKALASCPGCITP--LSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNA 168

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y  L++   R  +      + +EM +G  E      P   TY+ + DGL   G + K 
Sbjct: 169 CCYNPLLDTYTRQKNDARVAEVLKEMESGGVE------PTVGTYTILVDGLSTAGDISKV 222

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F ++K +N+  DV  Y+++I  +C A +   A  +F E +  G++PN  T+  ++N 
Sbjct: 223 ESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALING 282

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G+++ A  LL  M   GV  +  ++NT++DG+C  G V++A E+   ME  G   D
Sbjct: 283 FCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLD 342

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V++Y  L  G C+   +E A  L   M   G+    V+Y T
Sbjct: 343 VYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTT 383



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 134/271 (49%), Gaps = 6/271 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ P+  TY  LIN FCK+G++    ++L  +       + + F ++I G C    + +A
Sbjct: 268 GIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKA 327

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +   +   G + DV+TY TL  GLCR      A  L   M     E GV  + + ++Y
Sbjct: 328 LEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMT----ENGV--ESNYVSY 381

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+     KEG + +A+ LF  M+ +   P VVTY  +I G+  +    EA+    EM  
Sbjct: 382 TTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEK 441

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G+ P+V T+  +++  C NGK+D A RL E M Q G +P+   Y  L+ G    GR   
Sbjct: 442 KGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEE 501

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNK 317
           A + + +M + G   D   Y +L+     +K
Sbjct: 502 AFQFYDNMLAAGLTPDDTLYSMLVGSLHTDK 532



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 6/232 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN +     ++   D  L +   +  +G+  D+YTYN L    C++ R+     +L  + 
Sbjct: 311 FNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMT 370

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            +    + V++T+LI     E  ++EA  LF  +   G +P V TY  +I+G  ++G   
Sbjct: 371 ENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIR 430

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A    +EM       G+V  PD  TY+ +  G C  G VD A  LF +MK     P+VV
Sbjct: 431 EAERFKKEMEKK----GLV--PDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVV 484

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
            YT+LI G        EA   +  M+  G+ P+   +++++  L  + + DE
Sbjct: 485 AYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTDKRKDE 536



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V ++N++     K+          K +   GL PD+YTY  L++  C  G+V    
Sbjct: 409 SRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVAL 468

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   + +    P+ V +T+LI GL  E R  EA   +  + A G  PD   Y+ L+  L
Sbjct: 469 RLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSL 528


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 168/325 (51%), Gaps = 7/325 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L   L K       + LFK   +    P+ +T+NILI   C++G V  GF +   + 
Sbjct: 166 YNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQ 225

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTGHT 138
                PD VT+ +LI GLC  + +  A  L  ++++   C PDV TYT++I+G  + G  
Sbjct: 226 SFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKL 285

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LFEEM     E      P  +T++ + DG  K G +  A+ +  KM   +  PDV
Sbjct: 286 EAASVLFEEMIRSGIE------PTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDV 339

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VT+TSLI G+C   D      ++  M  + V PN+ T++VI+N LCK+ ++ EA  LL  
Sbjct: 340 VTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQ 399

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           +    V P   +YN ++DGFC  G V+ A  +   ME   C  D  ++ ILI G+C    
Sbjct: 400 LKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGR 459

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           +  AL ++ +ML+ G  P  +T ++
Sbjct: 460 MVEALDIFKKMLAIGCAPDNITISS 484



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 161/309 (52%), Gaps = 8/309 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F   L  H SPP   +FNIL   L +    +    LF  + S G  PD+ TYN LI+  
Sbjct: 185 LFKENLAFH-SPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGL 243

Query: 63  CKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           CK   +     +L  +  R+  +PD +T+TS+I G     ++  A+ LF ++   G +P 
Sbjct: 244 CKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPT 303

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V T+  LI+G  + G+ + A  + E+MA+ +      C PD +T++++ DG C+ G +  
Sbjct: 304 VVTFNVLIDGFGKIGNMVAAEAMHEKMASYS------CIPDVVTFTSLIDGYCRTGDIRL 357

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
             +++  MK  N++P++ TY+ +I   C  N  +EA+ L  ++    V P    +N +++
Sbjct: 358 GLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVID 417

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK G +DEA+ ++  M +   RPD   +  L+ G C+ GR+  A ++F  M + GC  
Sbjct: 418 GFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAP 477

Query: 302 DVFSYGILI 310
           D  +   L+
Sbjct: 478 DNITISSLV 486



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 156/339 (46%), Gaps = 43/339 (12%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMG-----------RVSPGFVVLGRILRSCFTP--- 85
           F RLN   L     TY +LI   C+MG             S G ++  R+L    T    
Sbjct: 82  FCRLN-FSLIHCFSTYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQ 140

Query: 86  ---------------------DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
                                 +  +  L+  L    ++ EA  LF +  AF   P+ +T
Sbjct: 141 AGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWT 200

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           +  LI GLCR G       LF  M +    FG  C PD +TY+T+  GLCK   +D+A +
Sbjct: 201 FNILIRGLCRVGEVEKGFELFNAMQS----FG--CLPDVVTYNTLISGLCKANELDRACD 254

Query: 185 LFLKMKDEN-INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           L  +++  N  +PDV+TYTS+I GF        A  LF EM+  G++P VVTFNV+++  
Sbjct: 255 LLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGF 314

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G M  A  + E M      PD   + +L+DG+C TG +    +++  M++     ++
Sbjct: 315 GKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNI 374

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++Y ++IN  CK+  I  A  L  ++    + P    YN
Sbjct: 375 YTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYN 413



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 142/274 (51%), Gaps = 7/274 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKMGRVSPGFV 73
           P V ++N L   L K    D    L K + S     PD+ TY  +I+ F K+G++    V
Sbjct: 231 PDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASV 290

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   ++RS   P  VTF  LI G      ++ A A+  K+ ++ C PDV T+T+LI+G C
Sbjct: 291 LFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYC 350

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           RTG   + L +++ M   N        P+  TYS I + LCK+  + +A++L  ++K  +
Sbjct: 351 RTGDIRLGLKVWDVMKARN------VSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSD 404

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P    Y  +I GFC A + +EA  +  EM ++  +P+ VTF +++   C  G+M EA 
Sbjct: 405 VFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEAL 464

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
            + + M+ IG  PD    ++L+      G+ + A
Sbjct: 465 DIFKKMLAIGCAPDNITISSLVACLLKAGKPSEA 498



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 1/180 (0%)

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY  +   LC+ G  D  + +   M+ +    D      L+  F  A  ++ AK L IE+
Sbjct: 95  TYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEV 154

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
             +  + +   +N ++NEL K GK+ EA  L +  +     P+   +N L+ G C  G V
Sbjct: 155 QGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEV 214

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG-IRPTVVTYNT 343
            +  ELF +M+S GC+ DV +Y  LI+G CK  E++ A  L  E+ S+    P V+TY +
Sbjct: 215 EKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTS 274



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 1/144 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D M   + SP  + +++++   L K+        L ++L    +FP  + YN +I+ F
Sbjct: 361 VWDVMKARNVSPN-IYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGF 419

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G V    V++  +      PD VTFT LI G C + R++EA  +F K+ A GC PD 
Sbjct: 420 CKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDN 479

Query: 123 FTYTTLINGLCRTGHTIVALNLFE 146
            T ++L+  L + G    A ++ +
Sbjct: 480 ITISSLVACLLKAGKPSEAFHIVQ 503


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 169/336 (50%), Gaps = 8/336 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR+HP+     +FN+L             LS   ++   GL PD  TYN L+N  C+ G 
Sbjct: 203 LRLHPNH---YTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGM 259

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L R+ +    P   T+ +L+        I +A  +   + AFG +PD++TY  
Sbjct: 260 LGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNV 319

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L  GLC+ G    A  L +EM     + G+V  PD +TY+T+ D   K      A  L  
Sbjct: 320 LAAGLCQAGKVDEAFKLKDEME----QLGIVS-PDVVTYNTLVDACFKCQRSSDALNLLE 374

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M+++ +   +VT+  +++G C      EA      M ++G+ P+V+T+N +++  CK G
Sbjct: 375 EMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAG 434

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            + +A  L++ M++ G++ D    NTL+   C   R   A+EL  +    G + D  SYG
Sbjct: 435 NVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYG 494

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++  Y K  + E AL L+ EM+ + + P++ TYNT
Sbjct: 495 TVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNT 530



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 171/336 (50%), Gaps = 17/336 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSL--FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P + + N +   LA++       SL  F  L ++ L P+ YT+N+L++  C  G ++   
Sbjct: 170 PSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADAL 229

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
             L ++     +PDAVT+ +L+   C +  + EA  L  +++  G  P   TY TL++  
Sbjct: 230 STLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAY 289

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            R G    A ++ E M      FG   +PD  TY+ +  GLC+ G VD+A     K+KDE
Sbjct: 290 ARLGWIKQATDVVEAMT----AFGF--EPDLWTYNVLAAGLCQAGKVDEA----FKLKDE 339

Query: 193 N-----INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
                 ++PDVVTY +L+         ++A  L  EM ++GV+ ++VT N+I+  LC+ G
Sbjct: 340 MEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREG 399

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           +++EA   LE+M + G+ PD   YNTL+D  C  G V +A  L   M  +G   D F+  
Sbjct: 400 QLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLN 459

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            L+   CK K  E A  L      +G  P  V+Y T
Sbjct: 460 TLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGT 495



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 170/342 (49%), Gaps = 6/342 (1%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D M ++    P V ++N L     K +     L+L + +   G+   L T+NI++ 
Sbjct: 334 FKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVK 393

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ G++      L  +     TPD +T+ +LI   C    + +A  L  ++   G K 
Sbjct: 394 GLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKM 453

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D FT  TL+  LC+      A    EE+     + G V  PD ++Y T+     KE   +
Sbjct: 454 DTFTLNTLLYNLCKEKRYEEA----EELLRAPPQRGFV--PDEVSYGTVMAAYFKEYKPE 507

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  L+ +M    + P + TY +LI+G        EA     E+M+ G+ P+  T+N+I+
Sbjct: 508 PALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIII 567

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G +++A +    M++   +PD    NTLM+G CL GR+ +A +LF S    G  
Sbjct: 568 HAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKK 627

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            DV +Y  LI   CK+ +++ AL  +++M  +G++P V TYN
Sbjct: 628 VDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYN 669



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 158/330 (47%), Gaps = 7/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFV 73
           P + ++N+L   L +    D    L   +  +G+  PD+ TYN L++   K  R S    
Sbjct: 312 PDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALN 371

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +         VT   ++KGLC E ++ EA      +   G  PDV TY TLI+  C
Sbjct: 372 LLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASC 431

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+   A  L +EM           K D  T +T+   LCKE   ++A+EL        
Sbjct: 432 KAGNVAKAFVLMDEMVRSG------LKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRG 485

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD V+Y +++  +        A CL+ EM+ + + P++ T+N ++  L   GK+ EA 
Sbjct: 486 FVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAI 545

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             L  ++++G+ PD + YN ++  +C  G + +A +    M  N    DV +   L+NG 
Sbjct: 546 DKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGL 605

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C    +E A+ L+   + KG +  V+TYNT
Sbjct: 606 CLYGRLEKAMKLFESWVEKGKKVDVITYNT 635



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 143/296 (48%), Gaps = 6/296 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + + NI+   L +    +  L   + +   GL PD+ TYN LI+  CK G V+  FV++ 
Sbjct: 385 LVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMD 444

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++RS    D  T  +L+  LC E R  EA  L       G  PD  +Y T++    +  
Sbjct: 445 EMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEY 504

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL L++EM            P   TY+T+  GL   G + +A +   ++ +  + P
Sbjct: 505 KPEPALCLWDEMIKRK------LTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVP 558

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D  TY  +I  +C   D  +A     +M++   +P+VVT N +MN LC  G++++A +L 
Sbjct: 559 DDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLF 618

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           E  ++ G + D   YNTL+   C    V+ A   F  ME  G   DVF+Y +L++ 
Sbjct: 619 ESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSA 674



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 128/313 (40%), Gaps = 45/313 (14%)

Query: 5   DYMLRMHPSP---PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           + +LR  P     P   S+  +     K    +  L L+  +    L P + TYN LI  
Sbjct: 475 EELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKG 534

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
              MG+++     L  ++     PD  T+  +I   C E  + +A     K+     KPD
Sbjct: 535 LSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPD 594

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V T  TL+NGLC  G    A+ LFE             K D ITY+T+   LCK+  VD 
Sbjct: 595 VVTCNTLMNGLCLYGRLEKAMKLFESWVEKGK------KVDVITYNTLIQALCKDNDVDT 648

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF-------------------- 221
           A   F  M+   + PDV TY  L+     A    EA+ +                     
Sbjct: 649 ALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKS 708

Query: 222 -IEMMDQGVQPNVVT---------------FNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            +E ++ G  P V +               +N  + ELC  G++ EA  +L+ M+Q G+ 
Sbjct: 709 SVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMS 768

Query: 266 PDASVYNTLMDGF 278
            D S Y TLM+G 
Sbjct: 769 VDNSTYITLMEGL 781



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 119/284 (41%), Gaps = 43/284 (15%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            C++D M++   +P  + ++N L   L+        +     L  +GL PD  TYNI+I+
Sbjct: 510 LCLWDEMIKRKLTPS-ISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIH 568

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK G +   F    +++ + F PD VT  +L+ GLC   R+ +A  LF      G K 
Sbjct: 569 AYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKV 628

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV TY TLI  LC+      AL  F +M           +PD  TY+ +   L + G   
Sbjct: 629 DVITYNTLIQALCKDNDVDTALRFFADMEVRG------LQPDVFTYNVLLSALSEAGRSV 682

Query: 181 KAKELFLKM-------------------------KDENINPDVVT-----------YTSL 204
           +A+++  K+                         KD  +  D+ +           Y   
Sbjct: 683 EAQKMLHKLNESGKLYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKY 742

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           I+  C      EAK +  EMM +G+  +  T+  +M  L K  K
Sbjct: 743 IKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGLIKRQK 786


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 176/402 (43%), Gaps = 60/402 (14%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F ++  M+     PP   +F +    L +    D  L+L + +   G  PD   Y  +I+
Sbjct: 143 FALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIH 202

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  G V+    +L  +L      D  TF  +++G+C   R+ EAA L  ++   GC P
Sbjct: 203 ALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMP 262

Query: 121 DVFTYTTLINGLCRTGHT---------IVALN--LFEEMANG---NGEFGVV-------- 158
            V TY  L+ GLCR             +  LN  LF  +  G    G+            
Sbjct: 263 GVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMG 322

Query: 159 ---CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
              C+PDA TYS +  GLCK G +  A  L  +M+ +   P+VVTYT ++  FC    W+
Sbjct: 323 LKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 382

Query: 216 EAKCLFIEM------------------------MD-----------QGVQPNVVTFNVIM 240
           + + L  EM                        MD           QG  P++ ++N I+
Sbjct: 383 DTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 442

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LC N +M+EA  + E +++ GV  +   YNT++      GR   A  L   M  +GC 
Sbjct: 443 YHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCS 502

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            DV SY  LI   CK+  ++ +L L  EM  KGI+P  V+YN
Sbjct: 503 LDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 544



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 170/327 (51%), Gaps = 8/327 (2%)

Query: 17  VCSFN-ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V  FN ++ GCLA+ K  +    L++ +   G  PD +TY+IL++  CK+GR+     +L
Sbjct: 295 VVLFNTVIGGCLAEGKLAEAT-ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL 353

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             + +  F P+ VT+T ++   C      +  AL  ++ A G   +   Y  +I  LC+ 
Sbjct: 354 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKD 413

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           G    A+ L +EM +        C PD  +Y+TI   LC    +++A+ +F  + +E + 
Sbjct: 414 GRMDEAMGLIQEMRSQG------CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVV 467

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
            + +TY ++I        W +A  L  EM+  G   +VV++N ++  +CK+G +D +  L
Sbjct: 468 ANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVL 527

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           LE M + G++P+   YN L+   C   RV  A EL   M + G   D+ +Y  LING CK
Sbjct: 528 LEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCK 587

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
              +  AL+L  ++ ++ + P ++TYN
Sbjct: 588 MGWMHAALNLLEKLHNENVHPDIITYN 614



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 173/364 (47%), Gaps = 46/364 (12%)

Query: 22  ILFGCLAKNKHYDTVLS-------------LFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           +L GC A    +D V+              L  R+ + G  P + TY  L+   C++ + 
Sbjct: 221 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 280

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +LGR+       + V F ++I G  AE ++ EA  L+  +   GC+PD  TY+ L
Sbjct: 281 DEARAMLGRVPEL----NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 336

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVV---------CKP------------------ 161
           ++GLC+ G    A+ L  EM        VV         CK                   
Sbjct: 337 MHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 396

Query: 162 --DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
             ++  Y+ +   LCK+G +D+A  L  +M+ +  NPD+ +Y ++I   C      EA+ 
Sbjct: 397 TLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEH 456

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +F  ++++GV  N +T+N I++ L ++G+  +A RL + MI  G   D   YN L+   C
Sbjct: 457 MFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMC 516

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G V+R+  L   M   G   +  SY ILI+  CK + +  AL L  +ML++G+ P +V
Sbjct: 517 KDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIV 576

Query: 340 TYNT 343
           TYNT
Sbjct: 577 TYNT 580



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 6/211 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +CS+N +   L  N+  +    +F+ L   G+  +  TYN +I+   + GR      +
Sbjct: 433 PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 492

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++    + D V++  LIK +C +  +  +  L  ++   G KP+  +Y  LI+ LC+
Sbjct: 493 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 552

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L ++M N          PD +TY+T+ +GLCK G++  A  L  K+ +EN+
Sbjct: 553 ERRVRDALELSKQMLNQG------LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 606

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +PD++TY  LI   C     ++A  L    M
Sbjct: 607 HPDIITYNILISWHCKVRLLDDAAMLLNRAM 637



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 50/100 (50%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+NIL   L K +     L L K++ + GL PD+ TYN LIN  CKMG +     +L ++
Sbjct: 542 SYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKL 601

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
                 PD +T+  LI   C    + +AA L  +  A  C
Sbjct: 602 HNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVC 641


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 165/311 (53%), Gaps = 8/311 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C F   + +H  P   CSFNIL   L +    D    LF  +   G  PD+ TYN LIN 
Sbjct: 223 CFFREQMGLH-GPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLING 281

Query: 62  FCKMGRVSPGFVVLGRIL-RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           FC++  V  G  +L  +L ++  +PD VT+TS+I G C   ++ +A+ LF  + + G KP
Sbjct: 282 FCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKP 341

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           + FT+  LING  + G  + A N++EEM        + C PD IT++++ DG C+ G V+
Sbjct: 342 NAFTFNILINGFGKVGDMVSAENMYEEM------LLLGCPPDIITFTSLIDGHCRTGKVE 395

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           ++ +L+ ++   N++P+  T+  L    C  N  +EA+    ++  + +      +N ++
Sbjct: 396 RSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVI 455

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G +DEA+ +L  M +   +PD   Y  L+ G C+ GR++ A  +F  M   GC 
Sbjct: 456 DGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCA 515

Query: 301 RDVFSYGILIN 311
            D  +   LI+
Sbjct: 516 PDSITMTSLIS 526



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 149/328 (45%), Gaps = 42/328 (12%)

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP-DAVTFTSLIKGLCAESRIMEAAALF 110
           L  YN L+N   +  +V    V   R       P D+ +F  LI+GLC   ++ +A  LF
Sbjct: 202 LVVYNKLLNQLVRGNQVDEA-VCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELF 260

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++R FGC PDV TY TLING CR        +L +E+ + N        PD +TY++I 
Sbjct: 261 NEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKND-----LSPDVVTYTSII 315

Query: 171 DGLCKEGFVDKAKELFLKMKDENINP---------------------------------- 196
            G CK G ++KA  LF  M    I P                                  
Sbjct: 316 SGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCP 375

Query: 197 -DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
            D++T+TSLI G C       +  L+ E+  + + PN  TF ++ N LCK  ++ EA   
Sbjct: 376 PDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGF 435

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           L  +    +     +YN ++DGFC  G V+ A  +   ME   C  D  +Y ILI G+C 
Sbjct: 436 LRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCM 495

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +  A+S+++ ML  G  P  +T  +
Sbjct: 496 KGRLSEAISIFNRMLGTGCAPDSITMTS 523



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 156/325 (48%), Gaps = 12/325 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++ L   L++   +++  +++  +N  G  PD      L++     G+ +     + R 
Sbjct: 139 TYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFN-----IART 193

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                    V +  L+  L   +++ EA   F +        D  ++  LI GLCR G  
Sbjct: 194 WVDGVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKV 253

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN-INPD 197
             A  LF EM       G  C PD ITY+T+ +G C+   VD+  +L  ++  +N ++PD
Sbjct: 254 DKAFELFNEMR------GFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPD 307

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           VVTYTS+I G+C      +A  LF  M+  G++PN  TFN+++N   K G M  A  + E
Sbjct: 308 VVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYE 367

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M+ +G  PD   + +L+DG C TG+V R+ +L+  + +     + +++ IL N  CK  
Sbjct: 368 EMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKEN 427

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYN 342
            +  A     ++  + I      YN
Sbjct: 428 RLHEARGFLRDLKWRHIVAQPFMYN 452



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 12/256 (4%)

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           T++ L++ L        A A++  +   G  PD      L++     G   +A    + +
Sbjct: 139 TYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFNIARTWVDGV 198

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                EF +V       Y+ + + L +   VD+A   F +    +   D  ++  LIRG 
Sbjct: 199 -----EFSLV------VYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGL 247

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL-ELMIQIGVRPD 267
           C     ++A  LF EM   G  P+V+T+N ++N  C+  ++D    LL EL+ +  + PD
Sbjct: 248 CRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPD 307

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y +++ G+C  G++ +A  LF +M S+G   + F++ ILING+ K  ++  A ++Y 
Sbjct: 308 VVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYE 367

Query: 328 EMLSKGIRPTVVTYNT 343
           EML  G  P ++T+ +
Sbjct: 368 EMLLLGCPPDIITFTS 383



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 58/122 (47%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F IL   L K           + L    +    + YN +I+ FCK G V    V+
Sbjct: 411 PNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVI 470

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD +T+T LI G C + R+ EA ++F ++   GC PD  T T+LI+ L +
Sbjct: 471 LAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLK 530

Query: 135 TG 136
            G
Sbjct: 531 AG 532


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 180/378 (47%), Gaps = 45/378 (11%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F   LR   SP  + +FN +   L +         + K + + GL P + TYN LI+ +C
Sbjct: 179 FRSALRRRVSPD-IYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYC 237

Query: 64  KMGRVSPGFVV---LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           K G     + V   L  ++ +  +P AVTF  LI G C  S    A  +F +++  G   
Sbjct: 238 KKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAA 297

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            V TY +LI+GLC  G     + L EEM     + G+   P+ IT+  +  G CK+G + 
Sbjct: 298 SVVTYNSLISGLCSEGKVEEGVKLMEEME----DLGL--SPNEITFGCVLKGFCKKGMMA 351

Query: 181 KAKELFLKMKDENINPDVV-----------------------------------TYTSLI 205
            A +    M + N+ PDVV                                   TY  LI
Sbjct: 352 DANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLI 411

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            GF  + DW  A  L  EM ++G++ +VVT+NV++  LC  G++ +A +LL+ M ++G+ 
Sbjct: 412 TGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLE 471

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           P+   YNT++ GFC  G +  A E+   ME      +V +Y + I  +C+  +++ A  L
Sbjct: 472 PNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDL 531

Query: 326 YSEMLSKGIRPTVVTYNT 343
            +EML K + P  +TY T
Sbjct: 532 LNEMLDKCLVPNGITYET 549



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 170/343 (49%), Gaps = 22/343 (6%)

Query: 11  HPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           HP   P   S N L   L   K  D     F+      + PD+YT+N +I+  C++G++ 
Sbjct: 149 HPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLR 208

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAE---SRIMEAAALFTKLRAFGCKPDVFTYT 126
               V   I      P   T+ SLI G C +     +     L  ++   G  P   T+ 
Sbjct: 209 KAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFG 268

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LING C+  +T  A+ +FEEM     + G+      +TY+++  GLC EG V++  +L 
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMK----QQGIAA--SVVTYNSLISGLCSEGKVEEGVKLM 322

Query: 187 LKMKDENINPDVVTYTSLIRGFCY------ANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            +M+D  ++P+ +T+  +++GFC       ANDW +       M ++ V+P+VV +N+++
Sbjct: 323 EEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDG------MTERNVEPDVVIYNILI 376

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   + GKM++A  + E M + G+ P+ + YN L+ GF  +G    A  L   M+  G  
Sbjct: 377 DVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIE 436

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            DV +Y +LI   C   E+  A+ L  EM   G+ P  +TYNT
Sbjct: 437 ADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 136/303 (44%), Gaps = 41/303 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F +L     KN +    + +F+ +   G+   + TYN LI+  C  G+V  G  +
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAES--------------------------------- 101
           +  +     +P+ +TF  ++KG C +                                  
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRR 381

Query: 102 --RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             ++ +A A+   +   G  P+V TY  LI G  R+G    A  L +EM     E G+  
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMK----EKGI-- 435

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D +TY+ +   LC +G V KA +L  +M +  + P+ +TY ++I+GFC   +   A  
Sbjct: 436 EADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYE 495

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +   M     + NVVT+NV +   C+ GKMDEA+ LL  M+   + P+   Y T+ +G  
Sbjct: 496 IRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMM 555

Query: 280 LTG 282
             G
Sbjct: 556 EKG 558



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 6/179 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L    +++  + +   L   +   G+  D+ TYN+LI   C  G V     +
Sbjct: 402 PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKL 461

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ +T+ ++I+G C +  I  A  + T++     + +V TY   I   C+
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQ 521

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G    A +L  EM +          P+ ITY TI +G+ ++G+    +   +    EN
Sbjct: 522 IGKMDEANDLLNEMLDK------CLVPNGITYETIKEGMMEKGYTPDIRGCTVSQASEN 574


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 174/341 (51%), Gaps = 6/341 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+      P V + + L   L K +H+   + LF  + S+G+ PD+Y Y  +I   
Sbjct: 178 VFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSL 237

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++  +S    ++  +  +    + V +  LI GLC + ++ EA  +   L     KPDV
Sbjct: 238 CELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDV 297

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY TL+ GLC+     + L + +EM        +   P     S++ +GL K G +++A
Sbjct: 298 VTYCTLVYGLCKVQEFEIGLEMMDEM------LCLRFSPSEAAVSSLVEGLRKRGKIEEA 351

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L  ++ D  ++P++  Y +LI   C    ++EA+ LF  M   G++PN VT++++++ 
Sbjct: 352 LNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDM 411

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ GK+D A   L  M+  G++     YN+L++G C  G ++ A+     M +      
Sbjct: 412 FCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPT 471

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V +Y  L+ GYC   +I  AL LY EM  KGI P++ T+ T
Sbjct: 472 VVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTT 512



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 170/334 (50%), Gaps = 9/334 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR  PS   V S   L   L K    +  L+L KR+   G+ P+L+ YN LI+  CK  +
Sbjct: 326 LRFSPSEAAVSS---LVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRK 382

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                ++  R+ +    P+ VT++ LI   C   ++  A +   ++   G K  V+ Y +
Sbjct: 383 FHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNS 442

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LING C+ G    A     EM N   E      P  +TY+++  G C +G ++KA  L+ 
Sbjct: 443 LINGHCKFGDISAAEGFMAEMINKKLE------PTVVTYTSLMGGYCSKGKINKALRLYH 496

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M  + I P + T+T+L+ G   A    +A  LF EM +  V+PN VT+NV++   C+ G
Sbjct: 497 EMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEG 556

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            M +A   L+ M + G+ PD   Y  L+ G CLTG+ + AK     +    C  +   Y 
Sbjct: 557 DMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYT 616

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            L++G+C+  ++E ALS+  EM+ +G+   +V Y
Sbjct: 617 GLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCY 650



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 163/351 (46%), Gaps = 33/351 (9%)

Query: 16  PVCSFNILFGCLAKNK------------HY-------DTVLSLFKRLNSIGLFPDLYTYN 56
           P   FN+LF C  K K            HY       D VL     +  + L P++ T +
Sbjct: 137 PSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLS 196

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
            L++   K         +   ++     PD   +T +I+ LC    +  A  +   + A 
Sbjct: 197 ALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEAT 256

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           GC  ++  Y  LI+GLC+      A+ + +++A      G   KPD +TY T+  GLCK 
Sbjct: 257 GCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLA------GKDLKPDVVTYCTLVYGLCKV 310

Query: 177 GFVDKAKELFLKMKDE----NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
               +  E+ L+M DE      +P     +SL+ G        EA  L   ++D GV PN
Sbjct: 311 ----QEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPN 366

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           +  +N +++ LCK  K  EA  L + M +IG+RP+   Y+ L+D FC  G+++ A     
Sbjct: 367 LFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLG 426

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M   G    V+ Y  LING+CK  +I  A    +EM++K + PTVVTY +
Sbjct: 427 EMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTS 477



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 175/374 (46%), Gaps = 42/374 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M ++   P  V +++IL     +    DT LS    +   GL   +Y YN LIN  
Sbjct: 389 LFDRMGKIGLRPNDV-TYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGH 447

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +S     +  ++     P  VT+TSL+ G C++ +I +A  L+ ++   G  P +
Sbjct: 448 CKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSI 507

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +T+TTL++GL R G    A+ LF EMA  N       KP+ +TY+ + +G C+EG + KA
Sbjct: 508 YTFTTLLSGLFRAGLIRDAVKLFNEMAEWN------VKPNRVTYNVMIEGYCEEGDMSKA 561

Query: 183 KELFLKMKDENINPDV-----------------------------------VTYTSLIRG 207
            E   +M ++ I PD                                    + YT L+ G
Sbjct: 562 FEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHG 621

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           FC      EA  +  EM+ +GV  ++V + V+++   K+        LL+ M   G++PD
Sbjct: 622 FCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPD 681

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
             +Y +++D    TG    A  ++  M + GC+ +  +Y  +ING CK   +  A  L S
Sbjct: 682 DVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCS 741

Query: 328 EMLSKGIRPTVVTY 341
           +M      P  VTY
Sbjct: 742 KMQPVSSVPNQVTY 755



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 169/393 (43%), Gaps = 64/393 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F  L   L +       + LF  +    + P+  TYN++I  +C+ G +S  F  
Sbjct: 505 PSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEF 564

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD  ++  LI GLC   +  EA      L    C+ +   YT L++G CR
Sbjct: 565 LKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCR 624

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC-----------------------------KPDAIT 165
            G    AL++ +EM     +  +VC                             KPD + 
Sbjct: 625 EGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVI 684

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL----- 220
           Y+++ D   K G   +A  ++  M +E   P+ VTYT++I G C A   NEA+ L     
Sbjct: 685 YTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQ 744

Query: 221 -------------FIEMMDQG-----------------VQPNVVTFNVIMNELCKNGKMD 250
                        F++++ +G                 +  N  T+N+++   C+ G+++
Sbjct: 745 PVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIE 804

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EAS L+  MI  GV PD   Y T+++  C    V +A EL+ SM   G   D  +Y  LI
Sbjct: 805 EASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLI 864

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G C   E+  A  L +EML +G+ P   T  T
Sbjct: 865 HGCCVAGEMGKATELRNEMLRQGLIPNNKTSRT 897


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 167/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++  M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYMPSVVT 418



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ +++ M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKLMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G M  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G    ++ +  L++   + G   +A ++F+ +   +       +P  ++++T+ +G  K 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWS------LRPSVVSFNTLMNGYIKL 184

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +D+   L   M+   + PDV TY+ LI G C  +  ++A  LF EM+D G+ PN VTF
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++  CKNG++D A  + +LM+   + PD   YNTL+ G C  G + +A++L   M  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            G   D  +Y  LI+G CK  ++E A      M+ + IR   V Y
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +   ++ P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 89/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+   K G++  A  + + + +  +RP    +NTLM+G+ 
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  V
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 180/378 (47%), Gaps = 45/378 (11%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F   LR   SP  + +FN +   L +         + K + + GL P + TYN LI+ +C
Sbjct: 179 FRSALRRRVSPD-IYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYC 237

Query: 64  KMGRVSPGFVV---LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           K G     + V   L  ++ +  +P AVTF  LI G C  S    A  +F +++  G   
Sbjct: 238 KKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAA 297

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            V TY +LI+GLC  G     + L EEM +     G+   P+ IT+  +  G CK+G + 
Sbjct: 298 SVVTYNSLISGLCSEGKVEEGVKLMEEMED----LGL--SPNEITFGCVLKGFCKKGMMA 351

Query: 181 KAKELFLKMKDENINPDVV-----------------------------------TYTSLI 205
            A +    M + N+ PDVV                                   TY  LI
Sbjct: 352 DANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLI 411

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            GF  + DW  A  L  EM ++G++ +VVT+NV++  LC  G++ +A +LL+ M ++G+ 
Sbjct: 412 TGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLE 471

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           P+   YNT++ GFC  G +  A E+   ME      +V +Y + I  +C+  +++ A  L
Sbjct: 472 PNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDL 531

Query: 326 YSEMLSKGIRPTVVTYNT 343
            +EML K + P  +TY T
Sbjct: 532 LNEMLDKCLVPNGITYET 549



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 170/343 (49%), Gaps = 22/343 (6%)

Query: 11  HPSP-PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           HP   P   S N L   L   K  D     F+      + PD+YT+N +I+  C++G++ 
Sbjct: 149 HPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLR 208

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAE---SRIMEAAALFTKLRAFGCKPDVFTYT 126
               V   I      P   T+ SLI G C +     +     L  ++   G  P   T+ 
Sbjct: 209 KAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFG 268

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LING C+  +T  A+ +FEEM     + G+      +TY+++  GLC EG V++  +L 
Sbjct: 269 VLINGYCKNSNTAAAVRVFEEMK----QQGIAA--SVVTYNSLISGLCSEGKVEEGVKLM 322

Query: 187 LKMKDENINPDVVTYTSLIRGFCY------ANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            +M+D  ++P+ +T+  +++GFC       ANDW +       M ++ V+P+VV +N+++
Sbjct: 323 EEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDG------MTERNVEPDVVIYNILI 376

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   + GKM++A  + E M + G+ P+ + YN L+ GF  +G    A  L   M+  G  
Sbjct: 377 DVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIE 436

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            DV +Y +LI   C   E+  A+ L  EM   G+ P  +TYNT
Sbjct: 437 ADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 136/303 (44%), Gaps = 41/303 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F +L     KN +    + +F+ +   G+   + TYN LI+  C  G+V  G  +
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAES--------------------------------- 101
           +  +     +P+ +TF  ++KG C +                                  
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRR 381

Query: 102 --RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             ++ +A A+   +   G  P+V TY  LI G  R+G    A  L +EM     E G+  
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMK----EKGI-- 435

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D +TY+ +   LC +G V KA +L  +M +  + P+ +TY ++I+GFC   +   A  
Sbjct: 436 EADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYE 495

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +   M     + NVVT+NV +   C+ GKMDEA+ LL  M+   + P+   Y T+ +G  
Sbjct: 496 IRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMM 555

Query: 280 LTG 282
             G
Sbjct: 556 EKG 558



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 56/122 (45%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+L G L         + L   ++ +GL P+  TYN +I  FC  G +   + +  
Sbjct: 439 VVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRT 498

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R+ +     + VT+   IK  C   ++ EA  L  ++      P+  TY T+  G+   G
Sbjct: 499 RMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558

Query: 137 HT 138
           +T
Sbjct: 559 YT 560


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 171/342 (50%), Gaps = 6/342 (1%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D M R+  + P V ++N L     K +     L L + +   G+ P L T+NI++ 
Sbjct: 333 FRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVK 392

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G++      L +I      PD +T+ +LI   C    + +A  L  ++   G K 
Sbjct: 393 SLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKM 452

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D FT  T++  LC+      A    EE+ +   + G V  PD ++Y T+     KE   +
Sbjct: 453 DTFTLNTVLYNLCKMKRYEDA----EELLHSPPQRGFV--PDEVSYGTVMAAYFKEYNPE 506

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  L+ +M +  + P + TY +LI+G C      EA     E +++G+ P+  T+N+I+
Sbjct: 507 PALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIII 566

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G ++ A R    M++   +PD    NTLM+G CL G++++A +LF S    G  
Sbjct: 567 HAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKK 626

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            DV +Y  LI   CK  +++ AL  + +M  KG++P   TYN
Sbjct: 627 VDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYN 668



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 170/339 (50%), Gaps = 23/339 (6%)

Query: 15  PPVCSFNILFGCLAKNKHY--DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P + + N +   L+++        L +F+ L  + L P+ YT+N+L++  C  G ++   
Sbjct: 169 PSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADAL 228

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
             L  +     +PDAVT+ +L+   C +  + EA AL  +++  G  P   TY TL++  
Sbjct: 229 ATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAF 288

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            R G    A  + E M      +G   +PD  TY+ +  GLC+ G VD+A     ++KDE
Sbjct: 289 ARLGWIKQATKVVESMT----AYGF--EPDLRTYNVLAMGLCQAGKVDEA----FRLKDE 338

Query: 193 -----NINPDVVTYTSLIRGFCYANDW---NEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
                   PDVVTY +L+   C+   W   ++A  L  EM D+GV+P +VT N+++  LC
Sbjct: 339 MERLGTALPDVVTYNTLVDA-CF--KWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLC 395

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K GK++EA   LE + + G+ PD   YNTL+D +C  G V +A  L   M   G   D F
Sbjct: 396 KEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTF 455

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   ++   CK K  E A  L      +G  P  V+Y T
Sbjct: 456 TLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGT 494



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 8/336 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR+HP+     +FN+L             L+    +   GL PD  TYN L+N  C+ G 
Sbjct: 202 LRLHPN---HYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGM 258

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L R+ R    P   T+ +L+        I +A  +   + A+G +PD+ TY  
Sbjct: 259 LGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNV 318

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L  GLC+ G    A  L +EM       G    PD +TY+T+ D   K      A  L  
Sbjct: 319 LAMGLCQAGKVDEAFRLKDEMER----LGTAL-PDVVTYNTLVDACFKWRCSSDALRLLE 373

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M+D+ + P +VT+  +++  C      EA     ++ ++G+ P+V+T+N +++  CK G
Sbjct: 374 EMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAG 433

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            + +A  L++ M+  G++ D    NT++   C   R   A+EL  S    G + D  SYG
Sbjct: 434 NVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYG 493

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++  Y K    E AL L+ +M+ + + P++ TYNT
Sbjct: 494 TVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 158/331 (47%), Gaps = 9/331 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L    A+         + + + + G  PDL TYN+L    C+ G+V   F +
Sbjct: 276 PTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRL 335

Query: 75  LGRILR-SCFTPDAVTFTSLIKGLCAESR-IMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
              + R     PD VT+ +L+   C + R   +A  L  ++R  G KP + T+  ++  L
Sbjct: 336 KDEMERLGTALPDVVTYNTLVDA-CFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSL 394

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    AL   E++A    E G+   PD ITY+T+ D  CK G V KA  L  +M  +
Sbjct: 395 CKEGKLEEALGKLEKIA----EEGLA--PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGK 448

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            +  D  T  +++   C    + +A+ L      +G  P+ V++  +M    K    + A
Sbjct: 449 GLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPA 508

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            RL + MI+  + P  S YNTL+ G C   R+  A +        G + D  +Y I+I+ 
Sbjct: 509 LRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHA 568

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           YCK  ++E A   +++M+    +P VVT NT
Sbjct: 569 YCKEGDLENAFRFHNKMVENSFKPDVVTCNT 599



 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 155/319 (48%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + + NI+   L K    +  L   +++   GL PD+ TYN LI+ +CK G V+  F +
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTL 441

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++      D  T  +++  LC   R  +A  L       G  PD  +Y T++    +
Sbjct: 442 MDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFK 501

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   AL L+++M     E  ++  P   TY+T+  GLC+   + +A +   +  ++ +
Sbjct: 502 EYNPEPALRLWDQMI----ERKLI--PSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGL 555

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY  +I  +C   D   A     +M++   +P+VVT N +MN LC +GK+D+A +
Sbjct: 556 VPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALK 615

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E  ++ G + D   YNTL+   C  G V+ A   F  ME  G   D F+Y ++++   
Sbjct: 616 LFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALS 675

Query: 315 KNKEIEGALSLYSEMLSKG 333
           +    E A ++  ++   G
Sbjct: 676 EAGRSEEAHNMLHKLADSG 694



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 157/330 (47%), Gaps = 7/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKMGRVSPGFV 73
           P + ++N+L   L +    D    L   +  +G   PD+ TYN L++   K    S    
Sbjct: 311 PDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALR 370

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      P  VT   ++K LC E ++ EA     K+   G  PDV TY TLI+  C
Sbjct: 371 LLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYC 430

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+   A  L +EM  G G      K D  T +T+   LCK    + A+EL        
Sbjct: 431 KAGNVAKAFTLMDEMV-GKG-----LKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRG 484

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD V+Y +++  +    +   A  L+ +M+++ + P++ T+N ++  LC+  ++ EA 
Sbjct: 485 FVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAI 544

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             L   ++ G+ PD + YN ++  +C  G +  A      M  N    DV +   L+NG 
Sbjct: 545 DKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGL 604

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           C + +++ AL L+   + KG +  V+TYNT
Sbjct: 605 CLHGKLDKALKLFESWVEKGKKVDVITYNT 634



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 7/265 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L + +     +         GL PD  TYNI+I+ +CK G +   F  
Sbjct: 522 PSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRF 581

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ + F PD VT  +L+ GLC   ++ +A  LF      G K DV TY TLI  +C+
Sbjct: 582 HNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCK 641

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL+ F++M           +PDA TY+ +   L + G  ++A  +  K+ D   
Sbjct: 642 VGDVDTALHFFDDMEVKG------LQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGK 695

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV-TFNVIMNELCKNGKMDEAS 253
                    L        D  E +        +  Q N + T+   +N LC  G++ EA 
Sbjct: 696 LSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAK 755

Query: 254 RLLELMIQIGVRPDASVYNTLMDGF 278
            +L+ M+Q G+  D S Y TLM+G 
Sbjct: 756 AVLDEMMQKGMPVDCSTYITLMEGL 780


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 175/329 (53%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FNIL      + + +  L L  ++   G  PD  TYN ++   CK  +++    +
Sbjct: 209 PNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDL 268

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++  S   P+  T+  L+ G C    + EAA +   +   G  PDV+TY T++ GLC 
Sbjct: 269 LLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCD 328

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ L ++M +    F +V  PD +TY+T+ DG  +    D A +L  +MK   +
Sbjct: 329 EGKIDEAVRLRDKMES----FKLV--PDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGV 382

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VT+  +I+ FC     +EA  + ++M++ G  P+  T+N ++N  CK GKM EA +
Sbjct: 383 KENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYK 442

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +++ M + G++ D    NTL+   CL  +++ A  L +     G + D  +YG LI GY 
Sbjct: 443 MMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYF 502

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+++ + AL L+ EM   GI  T++TYNT
Sbjct: 503 KDEQADRALKLWEEMKETGIVATIITYNT 531



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 168/358 (46%), Gaps = 31/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN-CFCKMGRVSPGFV 73
           P V ++N +   L      D  + L  ++ S  L PD+ TYN LI+ CF   G     F 
Sbjct: 314 PDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGS-DAAFK 372

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++  +       + VT   +IK  C E +I EA+ +  K+   G  PD FTY T+ING C
Sbjct: 373 LVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYC 432

Query: 134 RTGHTIVALNLFEEMANG---------NGEFGVVCKP--------------------DAI 164
           + G    A  + +EM            N     +C                      D +
Sbjct: 433 KAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEV 492

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY T+  G  K+   D+A +L+ +MK+  I   ++TY ++IRG C +   ++A     E+
Sbjct: 493 TYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNEL 552

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +++G+ P+  T N+I++  C  G +++A +    M++  ++PD    N L+ G C  G +
Sbjct: 553 LEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGML 612

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +   LF +  S G   D  +Y I+I+ +CK + +E A  L +EM  K + P   TYN
Sbjct: 613 EKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYN 670



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 148/315 (46%), Gaps = 6/315 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           + NI+          D   ++  ++   G  PD +TYN +IN +CK G+++  + ++  +
Sbjct: 388 THNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEM 447

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            R     D  T  +L+  +C E ++ +A  L  K R  G   D  TY TLI G  +    
Sbjct: 448 GRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQA 507

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL L+EEM     E G+V     ITY+TI  GLC  G  D+A +   ++ ++ + PD 
Sbjct: 508 DRALKLWEEMK----ETGIVAT--IITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDE 561

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            T   +I G+C+     +A     +M++  ++P++ T N+++  LC+ G +++   L   
Sbjct: 562 STSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNT 621

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
            I  G   D   YN ++  FC   R+  A +L   ME      D ++Y  ++ G  K   
Sbjct: 622 WISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGR 681

Query: 319 IEGALSLYSEMLSKG 333
            E A  L  +   KG
Sbjct: 682 TEEAEKLALKFAEKG 696



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 147/277 (53%), Gaps = 11/277 (3%)

Query: 70  PGFVVLGRILRSCFT-PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
           P   +   +LRS  T P  +  TSL   + ++   +    +F K++    +P++ T  TL
Sbjct: 121 PHHSLHAHLLRSDHTIPKPLLDTSLAAYVISKQPHL-GHQIFNKMKRLRFRPNLLTCNTL 179

Query: 129 INGLCRT--GHTIV-ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           +N L R+   H++V +  +F++      + GV  +P+  T++ +  G C +   ++A  L
Sbjct: 180 LNALVRSNSSHSLVFSREVFQDAV----KLGV--QPNVNTFNILIHGYCSDNNTEEALRL 233

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             +M +    PD VTY +++   C  +   + + L ++M + G+ PN  T+N++++  CK
Sbjct: 234 INQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCK 293

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
              + EA+ ++ELM   G+ PD   YNT++ G C  G+++ A  L   MES   + DV +
Sbjct: 294 LKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVT 353

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           Y  LI+G  +++  + A  L  EM ++G++   VT+N
Sbjct: 354 YNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHN 390



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 120/262 (45%), Gaps = 19/262 (7%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           K++  D  L L++ +   G+   + TYN +I   C  G+       L  +L     PD  
Sbjct: 503 KDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDES 562

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           T   +I G C E  + +A     K+     KPD+FT   L+ GLCR G     L LF   
Sbjct: 563 TSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTW 622

Query: 149 ANGNGEFGVVCKP-DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
            +         KP D +TY+ I    CKE  ++ A +L  +M+ +N+ PD  TY +++ G
Sbjct: 623 ISKG-------KPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTG 675

Query: 208 FCYANDWNEAKCLFIEMMDQGVQ-------PNVVTFNVIMNE----LCKNGKMDEASRLL 256
              A    EA+ L ++  ++G Q       P + T +++ +E    LC  GK  +A +L 
Sbjct: 676 LTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLF 735

Query: 257 ELMIQIGVRPDASVYNTLMDGF 278
           +   Q GV  +   Y  LMDG 
Sbjct: 736 QQAEQKGVSLNKYTYIKLMDGL 757



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 17/176 (9%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P + + NIL   L +    +  L+LF    S G   D  TYNI+I+ FCK  R+  
Sbjct: 590 HSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLED 649

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK-------PDVF 123
            F ++  +      PD  T+ +++ GL    R  EA  L  K    G +       P++ 
Sbjct: 650 AFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELG 709

Query: 124 T----YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           T    Y+  I+ LC  G    A+ LF++        GV    +  TY  + DGL K
Sbjct: 710 TSDMMYSEQISSLCTQGKYKDAMKLFQQAEQK----GVSL--NKYTYIKLMDGLLK 759



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 11/153 (7%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG-- 71
           P    ++NI+     K +  +    L   +    L PD YTYN ++    K GR      
Sbjct: 628 PMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEK 687

Query: 72  ----FVVLGRILRSCFT-PDAVT----FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
               F   G+ +++  T P+  T    ++  I  LC + +  +A  LF +    G   + 
Sbjct: 688 LALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNK 747

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
           +TY  L++GL +   +    +L   M +   +F
Sbjct: 748 YTYIKLMDGLLKRRKSFTTTSLLPFMVSATIQF 780


>gi|414883803|tpg|DAA59817.1| TPA: hypothetical protein ZEAMMB73_625576 [Zea mays]
          Length = 350

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/322 (34%), Positives = 164/322 (50%), Gaps = 41/322 (12%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLR 114
           +ILI CFC +GR+   F   G  LR+ +    V    LIKGLC   R  +A  + F ++ 
Sbjct: 33  DILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGDAMDMVFRRMP 92

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGL 173
             G  PDVF+Y  LI GLC    +  AL L   M ANG    G  C PD ++Y+ + DGL
Sbjct: 93  ELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANG----GYNCSPDVVSYNIVIDGL 148

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
            KEG VDKA  LF +M  +   PD+VTY+S+I G C A   ++A+    +M+ +GV PN 
Sbjct: 149 FKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNT 208

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
             +N +++  C  G++ EA RLL+ M   G++ +   YN L+D +C  GR   A+ +F S
Sbjct: 209 RPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDS 268

Query: 294 MESNGC----------------------MRDVFS-------------YGILINGYCKNKE 318
           M   G                       M D+               + ILI  Y K++ 
Sbjct: 269 MVRRGQKPNATTYCSLLHGYATKGALVDMHDLLDLMIRDGIPIEHRVFNILIYAYAKHET 328

Query: 319 IEGALSLYSEMLSKGIRPTVVT 340
           ++ A+++++EM   G+RP +V+
Sbjct: 329 VDKAMAVFAEMRQNGLRPNLVS 350



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 119/292 (40%), Gaps = 62/292 (21%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
            ++I I CFC +GR+      L  IL  CF              C   R+  A A F   
Sbjct: 15  AFDIRIRCFCNVGRLD-----LADILIRCF--------------CNVGRLDLAFAAFGLF 55

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              G +        LI GLC    T  A+++                             
Sbjct: 56  LRTGWRVQNVVLNQLIKGLCDGKRTGDAMDM----------------------------- 86

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG---VQ 230
                      +F +M +    PDV +Y +LI+G C      EA  L + M   G     
Sbjct: 87  -----------VFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANGGYNCS 135

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+VV++N++++ L K G++D+A  L   M   G  PD   Y++++DG C    +++A+  
Sbjct: 136 PDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEAS 195

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              M   G M +   Y  LI+GYC   ++  A+ L  +M   G++  VVTYN
Sbjct: 196 LQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYN 247



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 199 VTYTSLIRGFCYANDWNEA-KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V    LI+G C      +A   +F  M + G  P+V ++N ++  LC   K  EA  LL 
Sbjct: 65  VVLNQLIKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLL 124

Query: 258 LMIQIG---VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            M   G     PD   YN ++DG    G V++A  LF  M   G   D+ +Y  +I+G C
Sbjct: 125 HMTANGGYNCSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLC 184

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K + ++ A +   +ML KG+ P    YN+
Sbjct: 185 KAQAMDKAEASLQQMLYKGVMPNTRPYNS 213


>gi|219363731|ref|NP_001136745.1| hypothetical protein [Zea mays]
 gi|194696880|gb|ACF82524.1| unknown [Zea mays]
 gi|414875980|tpg|DAA53111.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
          Length = 421

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 182/332 (54%), Gaps = 11/332 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FNI+     K         + K +++ G+ P + TYN LI+ +CK G+V   + V
Sbjct: 66  PDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHV 125

Query: 75  ---LGRILRSCFTPDAVTFTSLIKG--LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
              L  ++++  +PD VTF  LI G  LC E ++ ++  L  ++   G    + T  +++
Sbjct: 126 DALLKEMIQAGISPDVVTFNVLINGYWLCREGKVEDSIKLVEEMEELGLACILSTMNSVL 185

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           NG C+ G  + A    E   +G  + G+  KP+ ITY+T+ DG  + G + +A      M
Sbjct: 186 NGFCKKGMMVEA----EGWVDGIAQRGM--KPNVITYNTLVDGYRRLGKMKEAAAAKDAM 239

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
             + I+P+V TY  LI GF  + DW     L  EM ++GV+ +VVT+NV++  LC  G++
Sbjct: 240 AGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEV 299

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +A +LL+ M+++G+ P    YNT+++GFC  G    A E+ + ME      +V +Y + 
Sbjct: 300 RKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVF 359

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  +CK  +++ A  + +EML KG+ P  +TY
Sbjct: 360 LKYFCKMGKMDEANVVLNEMLEKGLVPNRITY 391



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 143/299 (47%), Gaps = 11/299 (3%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P  ++ N L+    +  RV          LR   +PD  TF  +I G C   ++ +A  +
Sbjct: 31  PSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGDV 90

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN---LFEEMANGNGEFGVVCKPDAITY 166
              + A+G  P V TY TLI+G C+ G      +   L +EM            PD +T+
Sbjct: 91  AKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAG------ISPDVVTF 144

Query: 167 STITDG--LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           + + +G  LC+EG V+ + +L  +M++  +   + T  S++ GFC      EA+     +
Sbjct: 145 NVLINGYWLCREGKVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGI 204

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
             +G++PNV+T+N +++   + GKM EA+   + M   G+ P+   YN L+ GF  +   
Sbjct: 205 AQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDW 264

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                L   M+  G   DV +Y +LI   C   E+  A+ L  EM+  G+ P  V YNT
Sbjct: 265 RSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNT 323



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 129/265 (48%), Gaps = 11/265 (4%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           + P A +  +L+  L    R+  A   F         PD+FT+  +I+G C+TG     L
Sbjct: 29  YRPSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQ----L 84

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK---AKELFLKMKDENINPDVV 199
               ++A     +GV   P   TY+T+ DG CK G V K      L  +M    I+PDVV
Sbjct: 85  RKAGDVAKNISAWGVA--PSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVV 142

Query: 200 TYTSLIRGF--CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           T+  LI G+  C      ++  L  EM + G+   + T N ++N  CK G M EA   ++
Sbjct: 143 TFNVLINGYWLCREGKVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVD 202

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            + Q G++P+   YNTL+DG+   G++  A     +M   G   +V +Y  LI G+  ++
Sbjct: 203 GIAQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSR 262

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYN 342
           +      L  EM  KG++  VVTYN
Sbjct: 263 DWRSVSGLLDEMKEKGVKADVVTYN 287



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 138/313 (44%), Gaps = 52/313 (16%)

Query: 15  PPVCSFNILF------GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF--CKMG 66
           P V ++N L       G + K  H D   +L K +   G+ PD+ T+N+LIN +  C+ G
Sbjct: 101 PSVATYNTLIDGYCKRGQVGKMYHVD---ALLKEMIQAGISPDVVTFNVLINGYWLCREG 157

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           +V     ++  +          T  S++ G C +  ++EA      +   G KP+V TY 
Sbjct: 158 KVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYN 217

Query: 127 TLINGLCR------------------------------TGHTIV-----ALNLFEEMANG 151
           TL++G  R                              TG T          L +EM   
Sbjct: 218 TLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMK-- 275

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
             E GV  K D +TY+ +   LC +G V KA +L  +M +  + P  V Y ++I GFC  
Sbjct: 276 --EKGV--KADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEK 331

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            D   A  + + M  +  + NVVT+NV +   CK GKMDEA+ +L  M++ G+ P+   Y
Sbjct: 332 GDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITY 391

Query: 272 NTLMDGFCLTGRV 284
             +  G    G V
Sbjct: 392 EIINSGMIEKGYV 404



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 5/189 (2%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           +P A + + +   L +   VD A   F       ++PD+ T+  +I GFC      +A  
Sbjct: 30  RPSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGD 89

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKN---GKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           +   +   GV P+V T+N +++  CK    GKM     LL+ MIQ G+ PD   +N L++
Sbjct: 90  VAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLIN 149

Query: 277 GF--CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           G+  C  G+V  + +L   ME  G    + +   ++NG+CK   +  A      +  +G+
Sbjct: 150 GYWLCREGKVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGM 209

Query: 335 RPTVVTYNT 343
           +P V+TYNT
Sbjct: 210 KPNVITYNT 218


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K  +  +   L   +   G  P++ TY ILI+ FCK GR+     V
Sbjct: 12  PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 71

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +       +AV +  LI  LC + ++ +A  +F  + + GCKPD+FT+ +LI GLC+
Sbjct: 72  LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 131

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L+++M       GV+   + ITY+T+     + G + +A +L   M     
Sbjct: 132 VNKFEEALGLYQDML----LEGVI--ANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGC 185

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY  LI+  C A +  +   LF +MM +G+ PN ++ N+++N LC+ G +  A  
Sbjct: 186 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 245

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  MI  G+ PD   YN+L++G C TGR   A  LF  ++  G   D  +Y  LI+ +C
Sbjct: 246 FLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHC 305

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K    + A  L S  +  G  P  VT+
Sbjct: 306 KEGMFDDAHLLLSRGVDSGFIPNEVTW 332



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 153/299 (51%), Gaps = 6/299 (2%)

Query: 45  SIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104
           S+G  PD++TYN LI   CK G +     ++  +      P+ +T+T LI   C E R+ 
Sbjct: 7   SVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLE 66

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
           EA  +  ++   G   +   Y  LI+ LC+      ALN+F +M++        CKPD  
Sbjct: 67  EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKG------CKPDIF 120

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T++++  GLCK    ++A  L+  M  E +  + +TY +LI  F       EA  L  +M
Sbjct: 121 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 180

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           + +G   + +T+N ++  LC+ G +++   L E M+  G+ P+    N L++G C TG +
Sbjct: 181 LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNI 240

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A E    M   G   D+ +Y  LING CK    + AL+L+ ++  +GI P  +TYNT
Sbjct: 241 QHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNT 299



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 66/120 (55%)

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+  G  P++ T+N ++  LCK G +  A  L+  M   G  P+   Y  L+D FC  GR
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 64

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  A+ +   M   G   +   Y  LI+  CK+++++ AL+++ +M SKG +P + T+N+
Sbjct: 65  LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 124



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%)

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E M+ +G  PD   YNTL+ G C  G +  A+EL   M+  GC  +V +Y ILI+ +CK 
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
             +E A ++  EM  KG+    V YN
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYN 88


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 153/279 (54%), Gaps = 12/279 (4%)

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           ++ FCK G+V     V   +++  F P+ VT++SL+ G C    + +A ++F  +   G 
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCK 175
            PD+ +Y  LING C+   T  A+NLFEEM          C+   P+ +TY+++ DGLCK
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMH---------CRKIIPNVVTYNSLIDGLCK 336

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
            G +  A +L  +M D    PD++TY+SL+   C  +  ++A  L  ++ DQG+QPN+ T
Sbjct: 337 SGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYT 396

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           + +++N LCK G+ ++A  + E ++  G   + + Y  ++  FC  G    A  +   ME
Sbjct: 397 YTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKME 456

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            NGC+ +  +Y I+I       E + A  L  EM+++G+
Sbjct: 457 ENGCIPNAVTYEIIIRSLFDKDENDKAEKLLLEMITRGL 495



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 138/266 (51%), Gaps = 9/266 (3%)

Query: 79  LRSCFTPDAVTFTSL---IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
           LR CF      +  +   +   C E ++ EA  +F  +   G KP+V TY++L++G C  
Sbjct: 208 LRECFVSFMFQYLGMMAPVSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLV 267

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A ++F  MA G    GV   PD  +Y+ + +G CK    D A  LF +M    I 
Sbjct: 268 KEVNKAKSIFNNMAQG----GV--NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKII 321

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+VVTY SLI G C +   + A  L  EM D+G  P+++T++ +++ LCKN   D+A  L
Sbjct: 322 PNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIAL 381

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           L  +   G++P+   Y  L++G C  GR   A+ +F  +   G   +V +Y ++I+ +C 
Sbjct: 382 LTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCN 441

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTY 341
           N     AL++ S+M   G  P  VTY
Sbjct: 442 NGMFGEALAMLSKMEENGCIPNAVTY 467



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 9/133 (6%)

Query: 213 DWNEAKCLFIEMMDQ--GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
           D N  +  F+  M Q  G+   V TF       CK GK+ EA  +   M++ G +P+   
Sbjct: 204 DVNNLRECFVSFMFQYLGMMAPVSTF-------CKEGKVKEAKNVFAAMMKKGFKPNVVT 256

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           Y++LMDG+CL   VN+AK +F +M   G   D+ SY ILING+CK K  + A++L+ EM 
Sbjct: 257 YSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMH 316

Query: 331 SKGIRPTVVTYNT 343
            + I P VVTYN+
Sbjct: 317 CRKIIPNVVTYNS 329



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 77/139 (55%)

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           +  FC      EAK +F  MM +G +PNVVT++ +M+  C   ++++A  +   M Q GV
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            PD   YN L++GFC     + A  LF  M     + +V +Y  LI+G CK+ +I  AL 
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALK 345

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           L  EM  +G  P ++TY++
Sbjct: 346 LVDEMHDRGQPPDIITYSS 364


>gi|308044519|ref|NP_001183314.1| uncharacterized protein LOC100501715 [Zea mays]
 gi|238010730|gb|ACR36400.1| unknown [Zea mays]
          Length = 320

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/292 (36%), Positives = 156/292 (53%), Gaps = 11/292 (3%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL-FTKLR 114
           +ILI CFC +GR+   F   G  LR+ +    V    LIKGLC   R  +A  + F ++ 
Sbjct: 33  DILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGDAMDMVFRRMP 92

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGL 173
             G  PDVF+Y  LI GLC    +  AL L   M ANG    G  C PD ++Y+ + DGL
Sbjct: 93  ELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANG----GYNCSPDVVSYNIVIDGL 148

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
            KEG VDKA  LF +M  +   PD+VTY+S+I G C A   ++A+    +M+ +GV PN 
Sbjct: 149 FKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNT 208

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
             +N +++  C  G++ EA RLL+ M   G++ +   YN L+D +C  GR   A+ +F S
Sbjct: 209 RPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDS 268

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGA-----LSLYSEMLSKGIRPTVVT 340
           M   G   +  +Y  L++GY     +        L +  EM   G+RP +V+
Sbjct: 269 MVRRGQKPNATTYCSLLHGYATKGALVDMHDLLDLMIRDEMRQNGLRPNLVS 320



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 133/285 (46%), Gaps = 44/285 (15%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F  F   LR       V    ++ G     +  D +  +F+R+  +G  PD+++YN    
Sbjct: 49  FAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYN---- 104

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--- 117
                                          +LIKGLCAE +  EA  L   + A G   
Sbjct: 105 -------------------------------ALIKGLCAEKKSQEALELLLHMTANGGYN 133

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           C PDV +Y  +I+GL + G    A  LF EM       G    PD +TYS++ DGLCK  
Sbjct: 134 CSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMP------GQGFPPDLVTYSSVIDGLCKAQ 187

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            +DKA+    +M  + + P+   Y SLI G+C      EA  L  +M   G+Q NVVT+N
Sbjct: 188 AMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYN 247

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           ++++  CK G+  EA  + + M++ G +P+A+ Y +L+ G+   G
Sbjct: 248 MLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYATKG 292



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 119/292 (40%), Gaps = 62/292 (21%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
            ++I I CFC +GR+      L  IL  CF              C   R+  A A F   
Sbjct: 15  AFDIRIRCFCNVGRLD-----LADILIRCF--------------CNVGRLDLAFAAFGLF 55

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              G +        LI GLC    T  A+++                             
Sbjct: 56  LRTGWRVQNVVLNQLIKGLCDGKRTGDAMDM----------------------------- 86

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG---VQ 230
                      +F +M +    PDV +Y +LI+G C      EA  L + M   G     
Sbjct: 87  -----------VFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANGGYNCS 135

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+VV++N++++ L K G++D+A  L   M   G  PD   Y++++DG C    +++A+  
Sbjct: 136 PDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEAS 195

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              M   G M +   Y  LI+GYC   ++  A+ L  +M   G++  VVTYN
Sbjct: 196 LQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYN 247



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 11/191 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+NI+   L K    D    LF  +   G  PDL TY+ +I+  CK   +      
Sbjct: 136 PDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEAS 195

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L     P+   + SLI G C+  +++EA  L  K+   G + +V TY  LI+  C+
Sbjct: 196 LQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCK 255

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG-FVDKAKELFLKMKDE- 192
            G    A ++F+ M    G+     KP+A TY ++  G   +G  VD    L L ++DE 
Sbjct: 256 IGRCAEARSIFDSMVR-RGQ-----KPNATTYCSLLHGYATKGALVDMHDLLDLMIRDEM 309

Query: 193 ---NINPDVVT 200
               + P++V+
Sbjct: 310 RQNGLRPNLVS 320



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 199 VTYTSLIRGFCYANDWNEA-KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V    LI+G C      +A   +F  M + G  P+V ++N ++  LC   K  EA  LL 
Sbjct: 65  VVLNQLIKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLL 124

Query: 258 LMIQIG---VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            M   G     PD   YN ++DG    G V++A  LF  M   G   D+ +Y  +I+G C
Sbjct: 125 HMTANGGYNCSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLC 184

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K + ++ A +   +ML KG+ P    YN+
Sbjct: 185 KAQAMDKAEASLQQMLYKGVMPNTRPYNS 213



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP + +++ +   L K +  D   +  +++   G+ P+   YN LI+ +C +G++     
Sbjct: 170 PPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVR 229

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L ++       + VT+  LI   C   R  EA ++F  +   G KP+  TY +L++G  
Sbjct: 230 LLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYA 289

Query: 134 RTG-----HTIVALNLFEEM 148
             G     H ++ L + +EM
Sbjct: 290 TKGALVDMHDLLDLMIRDEM 309


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 166/327 (50%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L K +     L++  ++ +    PD+ T+N LI  FC+ G V     +
Sbjct: 379 PNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKL 438

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   +R    P+ +++T LI G C    +M A+ L  ++   G  PDV T   LI+GL  
Sbjct: 439 LREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVV 498

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    AL + E+MA           PDA  Y+ +  GLCK+  +  AK L ++M ++ +
Sbjct: 499 SGQVDEALMVREKMAERQ------VMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKV 552

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   YT+LI GF  ++  ++A+ +F  M ++G   ++V +N ++   CK+G M+EA  
Sbjct: 553 QPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVM 612

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            +  M ++G  PD   Y TL+DG+   G +  A      M    C  ++ +Y  LI GYC
Sbjct: 613 CMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYC 672

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
                + A  L++ M S+G+ P VV Y
Sbjct: 673 NIGNTDSAEVLFASMQSEGLFPNVVHY 699



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 154/297 (51%), Gaps = 6/297 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  P    YN+LI+ +C+ G V  G ++LG +      P  VT+ ++I  L  +S + + 
Sbjct: 306 GCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKI 365

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
            +L  +++  G  P+V  Y T+I  LC+      AL +  +M     +      PD +T+
Sbjct: 366 ESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFD------PDVVTF 419

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+    C+EG V++A +L  +     + P+ ++YT LI GFC   +   A  L +EM+ 
Sbjct: 420 NTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIG 479

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G  P+VVT   +++ L  +G++DEA  + E M +  V PDA++YN L+ G C    ++ 
Sbjct: 480 RGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSA 539

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           AK L V M       D F Y  LI+G+ ++ ++  A  ++  M  KG    +V YN 
Sbjct: 540 AKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNA 596



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 21/342 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +   L   L  +   D  L + +++    + PD   YN+LI+  CK   +S    +
Sbjct: 484 PDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNL 543

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     PD   +T+LI G     ++ +A  +F  +   G   D+  Y  +I G C+
Sbjct: 544 LVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCK 603

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A+     M        V C PD  TY+T+ DG  K+G +  A      M     
Sbjct: 604 SGMMNEAVMCMSSMRK------VGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRC 657

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++VTY SLI G+C   + + A+ LF  M  +G+ PNVV + V++  L K  K  +A+ 
Sbjct: 658 KPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAA 717

Query: 255 LLELMIQIGVRPDASVYNTLMDGF--CLTGRVN-------RAK------ELFVSMESNGC 299
             E M+     P+ +  + L++G   C  G +N       +A       ++F  + S+G 
Sbjct: 718 YFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGL 777

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              + +Y  +I   C++  +  A+ L  +M +KG  P  VT+
Sbjct: 778 DPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTF 819



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 6/250 (2%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           +++GLC E R+ E   L       GC P    Y  LI+G CR G     L L  EM    
Sbjct: 282 MVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMK- 340

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
              G++  P  +TY  I   L ++  + K + L  +MK+  ++P+V  Y ++I   C   
Sbjct: 341 ---GIM--PTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCR 395

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             ++A  +  +M+     P+VVTFN ++   C+ G ++EA +LL   I+  + P+   Y 
Sbjct: 396 SASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYT 455

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            L+ GFC+ G V  A +L V M   G   DV + G LI+G   + +++ AL +  +M  +
Sbjct: 456 PLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAER 515

Query: 333 GIRPTVVTYN 342
            + P    YN
Sbjct: 516 QVMPDANIYN 525



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 144/367 (39%), Gaps = 59/367 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N+L   L K +      +L   +    + PD + Y  LI+ F +  ++S    +
Sbjct: 519 PDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKI 578

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       D V + ++IKG C    + EA    + +R  GC PD FTYTTLI+G  +
Sbjct: 579 FEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAK 638

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL    +M          CKP+ +TY+++  G C  G  D A+ LF  M+ E +
Sbjct: 639 KGDIKAALRFLCDMMKRR------CKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGL 692

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMM----------------------------- 225
            P+VV YT LI      +   +A   F  M+                             
Sbjct: 693 FPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSN 752

Query: 226 ----DQ-----------------GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
               DQ                 G+ P +  +N I+  LC++  + +A  L E M   G 
Sbjct: 753 CSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGC 812

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN---KEIEG 321
            PD   + +L+ GF   G+  + +    +         +  Y  L+N +  +    E+  
Sbjct: 813 LPDPVTFLSLLYGFSSVGKSGKWRSALPNEFQQDEFEIICKYMTLLNQHVMSPVRDEVSR 872

Query: 322 ALSLYSE 328
            L LY+E
Sbjct: 873 VLQLYAE 879



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 8/203 (3%)

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYST--ITDGLCKEGFVDKAKELFLKMKDENINPDV 198
           A  L+ EM   + E G      A  YST  +  GLC EG V++ + L      E   P  
Sbjct: 258 ARRLYGEMLARDREGG------ADDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGA 311

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V Y  LI G+C   D      L  EM  +G+ P VVT+  I++ L +   + +   LL  
Sbjct: 312 VFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWE 371

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + G+ P+  +YNT++   C     ++A  +   M ++    DV ++  LI  +C+  +
Sbjct: 372 MKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGD 431

Query: 319 IEGALSLYSEMLSKGIRPTVVTY 341
           +E AL L  E + + + P  ++Y
Sbjct: 432 VEEALKLLREAIRRELEPNQLSY 454



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFN--VIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           W  A+ L+ EM+ +  +     ++  V++  LC  G+++E  RL+E     G  P A  Y
Sbjct: 255 WECARRLYGEMLARDREGGADDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFY 314

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N L+DG+C  G V R   L   ME  G M  V +YG +I+   +  ++    SL  EM  
Sbjct: 315 NVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKE 374

Query: 332 KGIRPTVVTYNT 343
           +G+ P V  YNT
Sbjct: 375 RGLSPNVQIYNT 386



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 2/164 (1%)

Query: 182 AKELFLKM--KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           A+ L+ +M  +D     D  +   ++RG C      E + L      +G  P  V +NV+
Sbjct: 258 ARRLYGEMLARDREGGADDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVL 317

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  C+ G +     LL  M   G+ P    Y  ++        + + + L   M+  G 
Sbjct: 318 IDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGL 377

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +V  Y  +I   CK +    AL++ ++M++    P VVT+NT
Sbjct: 378 SPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNT 421


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 172/340 (50%), Gaps = 7/340 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C+ + M+ +   P       ++ G L K  + D+   L  +L   G  P+L+ YN LIN 
Sbjct: 309 CLMNEMVELGFVPTEAAVSGLVDG-LRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINA 367

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK   +    ++   +       + VT++ LI   C    +  A + F ++   G +  
Sbjct: 368 LCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRET 427

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           ++ Y +LING C+ G    A  L+ +M N   E      P A T++T+  G CK+  V+K
Sbjct: 428 IYPYNSLINGHCKFGDLSAAEFLYTKMINEGLE------PTATTFTTLISGYCKDLQVEK 481

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A +L+ +M ++ I P V T+T+LI G C  N+  EA  LF EM+++ ++P  VT+NV++ 
Sbjct: 482 AFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIE 541

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK   MD+A  LLE M+  G+ PD   Y  L+ G C TGRV+ AK+    +       
Sbjct: 542 GYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKL 601

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +   Y  L++GYC    +  ALS   EM+ +GI   +V +
Sbjct: 602 NEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCH 641



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 167/340 (49%), Gaps = 8/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+     P  V ++N++     K  + D    L + +   GL PD YTY  LI+  
Sbjct: 520 LFDEMVERKIKPTEV-TYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGL 578

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  GRVS     +  + +     + + +++L+ G C + R+ EA +   ++   G   D+
Sbjct: 579 CSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDL 638

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             +  LI+G  +         L ++M +         +PD++ Y+++ D   KEG   K+
Sbjct: 639 VCHAVLIDGAMKQQDMKRLFGLLKKMYDQG------LRPDSVIYTSMIDAYSKEGSFKKS 692

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E    M  E   P+VVTYT+ + G C   + + A  LF +M+   + PN VT+   ++ 
Sbjct: 693 GECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDS 752

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L K G M EA+ L   M++ G+  + + YN L+ GFC  GR+  A ++   M  NG   D
Sbjct: 753 LTKEGNMKEATDLHHEMLK-GLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPD 811

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +Y  +I  +C++ ++  A+ L+  ML KG+ P  V +N
Sbjct: 812 CITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFN 851



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 166/369 (44%), Gaps = 43/369 (11%)

Query: 10  MHPSPPPV--CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           MH    P+   +++IL     K    D   S F R+   G+   +Y YN LIN  CK G 
Sbjct: 384 MHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGD 443

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +S    +  +++     P A TFT+LI G C + ++ +A  L+ ++      P V+T+T 
Sbjct: 444 LSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTA 503

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI GLC T     A  LF+EM           KP  +TY+ + +G CK   +DKA EL  
Sbjct: 504 LIYGLCSTNEMAEASKLFDEMVERK------IKPTEVTYNVMIEGYCKAHNMDKAFELLE 557

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M    + PD  TY  LI G C     + AK    ++  + ++ N + ++ +++  C  G
Sbjct: 558 DMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQG 617

Query: 248 KMDEASR-----------------------------------LLELMIQIGVRPDASVYN 272
           ++ EA                                     LL+ M   G+RPD+ +Y 
Sbjct: 618 RLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYT 677

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++D +   G   ++ E    M +  C  +V +Y   +NG CK  EI+ A  L+ +ML+ 
Sbjct: 678 SMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTA 737

Query: 333 GIRPTVVTY 341
            I P  VTY
Sbjct: 738 NISPNSVTY 746



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 161/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L K +  D    L+K ++S+ L  +  TY+ILI+ FCK G +      
Sbjct: 356 PNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESY 415

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            GR++          + SLI G C    +  A  L+TK+   G +P   T+TTLI+G C+
Sbjct: 416 FGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCK 475

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L+ EM            P   T++ +  GLC    + +A +LF +M +  I
Sbjct: 476 DLQVEKAFKLYREMNEKE------IAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKI 529

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P  VTY  +I G+C A++ ++A  L  +M+  G+ P+  T+  +++ LC  G++  A  
Sbjct: 530 KPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKD 589

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            ++ + +  ++ +   Y+ L+ G+C  GR+  A      M   G   D+  + +LI+G  
Sbjct: 590 FIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAM 649

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K ++++    L  +M  +G+RP  V Y +
Sbjct: 650 KQQDMKRLFGLLKKMYDQGLRPDSVIYTS 678



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 152/331 (45%), Gaps = 9/331 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
            P V +F  L   L           LF  +    + P   TYN++I  +CK   +   F 
Sbjct: 495 APSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFE 554

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +L +   PD  T+  LI GLC+  R+  A      L     K +   Y+ L++G C
Sbjct: 555 LLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYC 614

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    AL+   EM        +VC      ++ + DG  K+  + +   L  KM D+ 
Sbjct: 615 GQGRLTEALSASCEMIQRGINMDLVC------HAVLIDGAMKQQDMKRLFGLLKKMYDQG 668

Query: 194 INPDVVTYTSLIRGFCYANDWNEA-KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           + PD V YTS+I  +     + ++ +CL + M+ +   PNVVT+   MN LCK G++D A
Sbjct: 669 LRPDSVIYTSMIDAYSKEGSFKKSGECLDL-MVTEKCFPNVVTYTAFMNGLCKVGEIDRA 727

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             L E M+   + P++  Y   +D     G +  A +L   M   G + +  +Y ILI G
Sbjct: 728 GHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEM-LKGLLANTATYNILIRG 786

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +CK   +  A  + SEM   GI P  +TY+T
Sbjct: 787 FCKLGRLIEATKVLSEMTENGIFPDCITYST 817



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 163/362 (45%), Gaps = 41/362 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++N+L   L K       L + K L   GL  D+ TY  L+  FC++ +   G  ++ 
Sbjct: 253 IVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMN 312

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++   F P     + L+ GL  +  I  A  L  KL  FG  P++F Y  LIN LC+  
Sbjct: 313 EMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGE 372

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE------------ 184
               A  L++ M + N         + +TYS + D  CK G +D A+             
Sbjct: 373 DLDKAELLYKNMHSMNLPL------NDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRE 426

Query: 185 -----------------------LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
                                  L+ KM +E + P   T+T+LI G+C      +A  L+
Sbjct: 427 TIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLY 486

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            EM ++ + P+V TF  ++  LC   +M EAS+L + M++  ++P    YN +++G+C  
Sbjct: 487 REMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKA 546

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +++A EL   M  NG + D ++Y  LI+G C    +  A     ++  K ++   + Y
Sbjct: 547 HNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCY 606

Query: 342 NT 343
           + 
Sbjct: 607 SA 608



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 164/363 (45%), Gaps = 41/363 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + + +   L + + +  V  +F    + G+ PD YT + +I   C++         
Sbjct: 181 PEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEK 240

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  + F    VT+  LI GLC    ++EA  +   LR  G K DV TY TL+ G CR
Sbjct: 241 ILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCR 300

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  + L  EM     E G V  P     S + DGL K+G +D A +L +K+     
Sbjct: 301 VQQFDDGICLMNEMV----ELGFV--PTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGF 354

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++  Y +LI   C   D ++A+ L+  M    +  N VT++++++  CK G +D A  
Sbjct: 355 LPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAES 414

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               MI+ G+R     YN+L++G C  G ++ A+ L+  M + G      ++  LI+GYC
Sbjct: 415 YFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYC 474

Query: 315 KNKEIEGALSLY-----------------------------------SEMLSKGIRPTVV 339
           K+ ++E A  LY                                    EM+ + I+PT V
Sbjct: 475 KDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEV 534

Query: 340 TYN 342
           TYN
Sbjct: 535 TYN 537



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 154/304 (50%), Gaps = 16/304 (5%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+  DL  + +LI+   K   +   F +L ++      PD+V +TS+I     E    ++
Sbjct: 633 GINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKS 692

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
                 +    C P+V TYT  +NGLC+ G    A +LFE+M   N        P+++TY
Sbjct: 693 GECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTAN------ISPNSVTY 746

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
               D L KEG + +A +L  +M  + +  +  TY  LIRGFC      EA  +  EM +
Sbjct: 747 GCFLDSLTKEGNMKEATDLHHEML-KGLLANTATYNILIRGFCKLGRLIEATKVLSEMTE 805

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G+ P+ +T++ I+ E C++G +  A  L + M++ GV PD+  +N L+ G C+ G +++
Sbjct: 806 NGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDK 865

Query: 287 AKELFVSMESNGCM---------RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           A EL   M S G           RD+     L++G C   E++ AL LY  ML++ ++ +
Sbjct: 866 AFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGCVTGEVDTALRLYHSMLTRAVKLS 925

Query: 338 VVTY 341
           +  +
Sbjct: 926 LEMW 929



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 152/330 (46%), Gaps = 41/330 (12%)

Query: 49  FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108
           F     ++ L++ + +  RV    VVL  +L +   P+  T ++++ GL    + +    
Sbjct: 145 FSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWE 204

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           +F +    G KPD +T + +I  LC       A      M +   +  +V      TY+ 
Sbjct: 205 VFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIV------TYNV 258

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ- 227
           +  GLCK G V +A E+   ++++ +  DVVTY +L+ GFC    +++  CL  EM++  
Sbjct: 259 LIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELG 318

Query: 228 ----------------------------------GVQPNVVTFNVIMNELCKNGKMDEAS 253
                                             G  PN+  +N ++N LCK   +D+A 
Sbjct: 319 FVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAE 378

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + M  + +  +   Y+ L+D FC  G ++ A+  F  M  +G    ++ Y  LING+
Sbjct: 379 LLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGH 438

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK  ++  A  LY++M+++G+ PT  T+ T
Sbjct: 439 CKFGDLSAAEFLYTKMINEGLEPTATTFTT 468



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 159/337 (47%), Gaps = 33/337 (9%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           VC   ++ G + K +    +  L K++   GL PD   Y  +I+ + K G        L 
Sbjct: 639 VCHAVLIDGAM-KQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLD 697

Query: 77  -RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             +   CF P+ VT+T+ + GLC    I  A  LF K+      P+  TY   ++ L + 
Sbjct: 698 LMVTEKCF-PNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKE 756

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           G+   A +L  EM  G          +  TY+ +  G CK G + +A ++  +M +  I 
Sbjct: 757 GNMKEATDLHHEMLKG-------LLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIF 809

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PD +TY+++I   C + D   A  L+  M+ +GV+P+ V FN+++   C NG +D+A  L
Sbjct: 810 PDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFEL 869

Query: 256 LELMIQIGVRP---------DASVYNTLMDGFCLTGRVNRAKELFVSM---------ESN 297
              M+  G++P         D  V N LM G C+TG V+ A  L+ SM         E  
Sbjct: 870 RNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGCVTGEVDTALRLYHSMLTRAVKLSLEMW 929

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            C+  + SYG++     K++E+E   S+    + K +
Sbjct: 930 KCLY-LLSYGVI----SKSEELEVNESITKRRIGKAL 961



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 5/190 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F+ ML  + SP  V ++      L K  +      L   +   GL  +  TYNILI  F
Sbjct: 730 LFEKMLTANISPNSV-TYGCFLDSLTKEGNMKEATDLHHEMLK-GLLANTATYNILIRGF 787

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+GR+     VL  +  +   PD +T++++I   C    +  A  L+  +   G +PD 
Sbjct: 788 CKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDS 847

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGN---GEFGVVCKPDAITYSTITDGLCKEGFV 179
             +  LI G C  G    A  L  +M +      +   + K D    + +  G C  G V
Sbjct: 848 VAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGCVTGEV 907

Query: 180 DKAKELFLKM 189
           D A  L+  M
Sbjct: 908 DTALRLYHSM 917


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 164/342 (47%), Gaps = 7/342 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            + D M R       +C +N L  C  + K    V  L + + + G+   + TY IL++ 
Sbjct: 153 ALLDEMPRHGVRLNALC-YNSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDS 211

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
               G +S    V+  +       D   +T++I   C    +  A+ +F +    G +P+
Sbjct: 212 LSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPN 271

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TY  LING C+ G    A  L  +M  G G        + I ++T+ DG C++G VD 
Sbjct: 272 ERTYGVLINGFCKIGQMEAAEMLLADM-QGRG-----VGHNQIIFNTMIDGYCRQGMVDN 325

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A ++   M+   I  DV TY +L  G C  N   EAK L   M+++GV PN VT+  +++
Sbjct: 326 ALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLIS 385

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK G M EA RL   M   G  P    YN +MDG+   G +  A+     ME  G + 
Sbjct: 386 IHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVP 445

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           DV++Y  L++G+C N +++ AL L+ EM  +G  P VV Y  
Sbjct: 446 DVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTA 487



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 160/327 (48%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++ IL   L+       V ++   + +  +  D+Y Y  +IN +C+ G V     V  
Sbjct: 202 VGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFD 261

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
             + +   P+  T+  LI G C   ++  A  L   ++  G   +   + T+I+G CR G
Sbjct: 262 ECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQG 321

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL +   M     E       D  TY+T+  GLC+   + +AK L   M ++ + P
Sbjct: 322 MVDNALKVKAAMEKMGIEL------DVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPP 375

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTYT+LI   C   D  EA+ LF EM  +G  P+VVT+NV+M+   K G + EA R  
Sbjct: 376 NYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFR 435

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + M + G+ PD   Y +L+ G C+ G+V+ A +LF  M+  G   +V +Y  LI+G  K 
Sbjct: 436 KEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKE 495

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
              E A  LY +ML  G+ P    Y+ 
Sbjct: 496 GRSEEAFQLYDDMLKAGLTPDDSLYSA 522



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 11/281 (3%)

Query: 66  GRVSPGFVVLGRILRSCFTPDAVT---FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           G+++    +L R L SC  P +V+    + ++ G C   R+ +A AL  ++   G + + 
Sbjct: 110 GQLADAAAILTRALGSC--PGSVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNA 167

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y +L++   R         L E M NG  E  V       TY+ + D L   G + K 
Sbjct: 168 LCYNSLLDCYVRRKDDARVQELLEIMENGGIEATVG------TYTILVDSLSTAGDISKV 221

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +  +MK +N+  DV  YT++I  +C A +   A  +F E +  G++PN  T+ V++N 
Sbjct: 222 EAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLING 281

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G+M+ A  LL  M   GV  +  ++NT++DG+C  G V+ A ++  +ME  G   D
Sbjct: 282 FCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELD 341

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V++Y  L  G C+   +  A +L   M+ KG+ P  VTY T
Sbjct: 342 VYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTT 382



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 139/280 (49%), Gaps = 7/280 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ +L     K    +    L   +   G+  +   +N +I+ +C+ G V     V
Sbjct: 270 PNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKV 329

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +     D  T+ +L  GLC  +R+ EA  L   +   G  P+  TYTTLI+  C+
Sbjct: 330 KAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCK 389

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  LF EMA G G       P  +TY+ + DG  K+G + +A+    +M+ + +
Sbjct: 390 EGDMVEARRLFREMA-GKGAM-----PSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGL 443

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TY SL+ G C     + A  LF EM  +G +PNVV +  +++ L K G+ +EA +
Sbjct: 444 VPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQ 503

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVN-RAKELFVS 293
           L + M++ G+ PD S+Y+ L+       R +   K++ VS
Sbjct: 504 LYDDMLKAGLTPDDSLYSALVGSLHTDNRKDIHHKQIKVS 543



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 129/264 (48%), Gaps = 6/264 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ P+  TY +LIN FCK+G++    ++L  +       + + F ++I G C +  +  A
Sbjct: 267 GIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNA 326

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +   +   G + DV+TY TL  GLCR      A  L   M     E GV   P+ +TY
Sbjct: 327 LKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMI----EKGV--PPNYVTY 380

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+    CKEG + +A+ LF +M  +   P VVTY  ++ G+       EA+    EM  
Sbjct: 381 TTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEK 440

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G+ P+V T+  +++  C NGK+D A +L E M   G  P+   Y  L+ G    GR   
Sbjct: 441 KGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEE 500

Query: 287 AKELFVSMESNGCMRDVFSYGILI 310
           A +L+  M   G   D   Y  L+
Sbjct: 501 AFQLYDDMLKAGLTPDDSLYSALV 524



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 10/175 (5%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++  L     K         LF+ +   G  P + TYN++++ + K G +     
Sbjct: 374 PPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAER 433

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
               + +    PD  T+ SL+ G C   ++  A  LF +++  G +P+V  YT LI+GL 
Sbjct: 434 FRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLA 493

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           + G +  A  L+++M            PD   YS +   L      D  K++  K
Sbjct: 494 KEGRSEEAFQLYDDMLKAG------LTPDDSLYSALVGSL----HTDNRKDIHHK 538


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 169/330 (51%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN++   + K    D  + LF+ +      PD YTY  L++  CK+ R+     +
Sbjct: 179 PNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSL 238

Query: 75  LGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L  + +  CF P   TF  LI GLC +        L   +   GC P+  TY TLI+GLC
Sbjct: 239 LDEMQIEGCF-PSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC 297

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    AL+L + M +        C P+ +TY TI +GL K+G       + + M++  
Sbjct: 298 LKGKLDKALSLLDRMVSSK------CVPNEVTYGTIINGLVKQGRALDGARVLVLMEERG 351

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              +   Y+ L+ G        EA  LF E MD+G + N V ++ +++ LC++ K DEA 
Sbjct: 352 YIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAM 411

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           ++L  M   G  P+A  +++LM GF   G  ++A E++  M    C  +   Y +LI+G 
Sbjct: 412 KILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGL 471

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK+ ++  A+ ++++ML+ G RP VV Y++
Sbjct: 472 CKDGKVMEAMMVWAKMLATGCRPDVVAYSS 501



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 174/334 (52%), Gaps = 13/334 (3%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           PSP    +FN+L   L K   +  V  L   +   G  P+  TYN LI+  C  G++   
Sbjct: 249 PSP---ATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 305

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +L R++ S   P+ VT+ ++I GL  + R ++ A +   +   G   + + Y+ L++G
Sbjct: 306 LSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSG 365

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           L + G +  A+ LF+E  +        CK + + YS + DGLC++   D+A ++  +M D
Sbjct: 366 LFKEGKSEEAMRLFKESMDKG------CKLNTVLYSALVDGLCRDRKPDEAMKILSEMTD 419

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           +   P+  T++SL++GF    + ++A  ++ +M       N V ++V+++ LCK+GK+ E
Sbjct: 420 KGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVME 479

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM---ESNGCMRDVFSYGI 308
           A  +   M+  G RPD   Y++++ G C  G V  A +L+  M   E +    DV +Y I
Sbjct: 480 AMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDS-QPDVITYNI 538

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           L N  CK   I  A+ L + ML +G  P +VT N
Sbjct: 539 LFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCN 572



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 8/298 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L      D  LSL  R+ S    P+  TY  +IN   K GR   G  V
Sbjct: 284 PNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARV 343

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +    +  +   ++ L+ GL  E +  EA  LF +    GCK +   Y+ L++GLCR
Sbjct: 344 LVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCR 403

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ +  EM +        C P+A T+S++  G  + G   KA E++  M   N 
Sbjct: 404 DRKPDEAMKILSEMTDKG------CAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINC 457

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + V Y+ LI G C      EA  ++ +M+  G +P+VV ++ ++  LC  G ++EA +
Sbjct: 458 AENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALK 517

Query: 255 LLELMI--QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           L   M+  +   +PD   YN L +  C    ++RA +L  SM   GC  D+ +  I +
Sbjct: 518 LYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFL 575



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 155/346 (44%), Gaps = 17/346 (4%)

Query: 9   RMHPSPPPVCSFNI---LFGCLAKNKHYDTVL-SLFKRLNSIGLFPDLYTYNILINCFCK 64
           ++  SPP + SF +    F  L +N  Y +   SL K LN + L   +++       F  
Sbjct: 57  KIFSSPPKMGSFKVGDSTFYSLIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFVMFKA 116

Query: 65  MGRVSPGFVVLGRILRSCF----TPDAVTFTSLIKGLCA---ESRIMEAAALFTKLRAFG 117
            G+       +    R  F     P   +F S++  +       R +E        +   
Sbjct: 117 YGKAHLPNKAIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMN 176

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
             P+V ++  +I  +C+ G    A+ LF EM          C PDA TY T+ DGLCK  
Sbjct: 177 ILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRK------CVPDAYTYCTLMDGLCKVD 230

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            +D+A  L  +M+ E   P   T+  LI G C   D+     L   M  +G  PN VT+N
Sbjct: 231 RIDEAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYN 290

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +++ LC  GK+D+A  LL+ M+     P+   Y T+++G    GR      + V ME  
Sbjct: 291 TLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEER 350

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G + + + Y +L++G  K  + E A+ L+ E + KG +   V Y+ 
Sbjct: 351 GYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSA 396



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 129/269 (47%), Gaps = 24/269 (8%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           ++ L   L +++  D  + +   +   G  P+ +T++ L+  F ++G       V   + 
Sbjct: 394 YSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMT 453

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           +     + V ++ LI GLC + ++MEA  ++ K+ A GC+PDV  Y+++I GLC  G   
Sbjct: 454 KINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVE 513

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL L+ EM     +     +PD ITY+ + + LCK+  + +A +L   M D   +PD+V
Sbjct: 514 EALKLYNEMLCLEPD----SQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLV 569

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP---NVVTFNVIMNELCKNGKMDEASRLL 256
           T                   +F+ M+ + + P        + ++  L K  +   AS+++
Sbjct: 570 TCN-----------------IFLRMLREKLDPPQDGAKFLDELVVRLLKRQRNLGASKIV 612

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           E+M+Q  + P AS +  ++   C   ++ 
Sbjct: 613 EVMLQKFLSPKASTWARVVHELCQPKKIQ 641


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 170/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L   L K    D    LF+++   G   +   Y  LI  F   GR   G  +
Sbjct: 453 PNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKI 512

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++R    PD     + +  +     + +  A+F  +++FG  PDV +Y+ LI+GL +
Sbjct: 513 YKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTK 572

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G      N+F+ M+     F +    DA  Y+ + DGLCK G VDKA E+  +MK +++
Sbjct: 573 AGQARETSNIFQAMSQQG--FAL----DARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHV 626

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P V TY S++ G    +  +EA  LF E   +G++ NV+ ++ +++   K G++DEA  
Sbjct: 627 HPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYL 686

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +LE M++ G+ P+   +N+LMD    T  ++ A   F SM+   C  + ++Y ILING C
Sbjct: 687 ILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLC 746

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + ++   A   + EM  +G+ P VVTY T
Sbjct: 747 RVQKYNKAFVFWQEMQKQGLIPNVVTYTT 775



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 159/329 (48%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +       + +D    L +RL   G  P + ++N ++ C  K  +V     +
Sbjct: 314 PCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTL 373

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    P+  T+  +I  LC   R+ EA  +  ++   G  P++ +   +++ LC+
Sbjct: 374 FD-VMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCK 432

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  +FE  A+  G     C P+++TY ++ DGL K+G +D A  LF KM D   
Sbjct: 433 ANQLEEAHRIFES-ASERG-----CNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGH 486

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + + + YTSLIR F       +   ++ EM+ +G +P++   N  M+ + K G++++   
Sbjct: 487 DANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRA 546

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E M   G  PD   Y+ L+ G    G+      +F +M   G   D  +Y  +++G C
Sbjct: 547 IFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLC 606

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+ +++ A  +  EM  K + PTV TY +
Sbjct: 607 KSGKVDKAYEVLEEMKVKHVHPTVATYGS 635



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 162/343 (47%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +F+ ML       P+   +++       +  D    ++K +   G  PDL   N  ++
Sbjct: 475 YRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDG-HKIYKEMIRRGGRPDLTLLNTYMD 533

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           C  K G V  G  +   +    F PD  +++ LI GL    +  E + +F  +   G   
Sbjct: 534 CVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFAL 593

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D   Y  +++GLC++G    A  + EEM   +        P   TY +I DGL K   +D
Sbjct: 594 DARAYNAVVDGLCKSGKVDKAYEVLEEMKVKH------VHPTVATYGSIVDGLAKIDRLD 647

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  LF + K + I  +V+ Y+SLI GF      +EA  +  EMM +G+ PNV T+N +M
Sbjct: 648 EAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLM 707

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L K  ++DEA    + M ++   P+   Y+ L++G C   + N+A   +  M+  G +
Sbjct: 708 DALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLI 767

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +V +Y  +I+G  K   I  A SL+    + G  P   ++N 
Sbjct: 768 PNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNA 810



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 168/358 (46%), Gaps = 30/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           PP  ++ +L G LA+ +  +  L L +++  +G    +  +  L+    + G++ P   +
Sbjct: 174 PPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALAL 233

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  SC  PD V +   I        +  A   F +L+A G +PD  +YT+++  LC+
Sbjct: 234 VDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCK 293

Query: 135 TGHTIVALNLFEEMAN-----------------GNGE-----FGVV-------CKPDAIT 165
            G    A  LF +M                   G+ E     + ++       C P  ++
Sbjct: 294 AGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVS 353

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +++I   L K+  VD+A  LF  MK ++  P++ TY  +I   C A   NEA  +  EM 
Sbjct: 354 FNSILTCLGKKRKVDEALTLFDVMK-KDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEME 412

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G+ PN+++ N++++ LCK  +++EA R+ E   + G  P++  Y +L+DG    G+++
Sbjct: 413 LAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKID 472

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A  LF  M   G   +   Y  LI  +  +   E    +Y EM+ +G RP +   NT
Sbjct: 473 DAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNT 530



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 150/308 (48%), Gaps = 6/308 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++IL   L K        ++F+ ++  G   D   YN +++  CK G+V   + V
Sbjct: 558 PDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEV 617

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P   T+ S++ GL    R+ EA  LF + ++ G + +V  Y++LI+G  +
Sbjct: 618 LEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGK 677

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + EEM            P+  T++++ D L K   +D+A   F  MK+   
Sbjct: 678 VGRIDEAYLILEEMMKKG------LTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKC 731

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+  TY+ LI G C    +N+A   + EM  QG+ PNVVT+  +++ L K G + +A  
Sbjct: 732 SPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYS 791

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E     G  PD++ +N L++G     R   A ++F      GC  +V +   L++   
Sbjct: 792 LFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALN 851

Query: 315 KNKEIEGA 322
           K + +E A
Sbjct: 852 KTECLEQA 859



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 158/338 (46%), Gaps = 7/338 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I+  M+R     P +   N    C+ K    +   ++F+ + S G  PD+ +Y+ILI+  
Sbjct: 512 IYKEMIR-RGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGL 570

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G+      +   + +  F  DA  + +++ GLC   ++ +A  +  +++     P V
Sbjct: 571 TKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTV 630

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY ++++GL +      A  LFEE  +   E  V      I YS++ DG  K G +D+A
Sbjct: 631 ATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNV------ILYSSLIDGFGKVGRIDEA 684

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +  +M  + + P+V T+ SL+       + +EA   F  M +    PN  T+++++N 
Sbjct: 685 YLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILING 744

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+  K ++A    + M + G+ P+   Y T++ G    G +  A  LF   ++NG + D
Sbjct: 745 LCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPD 804

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             S+  LI G         A  ++ E   +G R  V T
Sbjct: 805 SASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKT 842



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 32/314 (10%)

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA-ALFTKLRAF 116
           L+    +  R+   F V+G +    F P    +T LI G  AE+R  E A  L  +++  
Sbjct: 147 LVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLI-GALAEARQPERALELLRQMQDV 205

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV------------------ 158
           G +  V  +TTL+  L R G    AL L +E+     E  +V                  
Sbjct: 206 GYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMA 265

Query: 159 -----------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
                       +PD ++Y+++   LCK G + +A+ELF +M+ E   P    Y ++I G
Sbjct: 266 WKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMG 325

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
           +  A  +++A  L   + ++G  P+VV+FN I+  L K  K+DEA  L ++M +   +P+
Sbjct: 326 YGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVM-KKDAKPN 384

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
            S YN ++D  C+ GRVN A ++   ME  G   ++ S  I+++  CK  ++E A  ++ 
Sbjct: 385 ISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFE 444

Query: 328 EMLSKGIRPTVVTY 341
               +G  P  VTY
Sbjct: 445 SASERGCNPNSVTY 458



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 6/239 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   LAK    D    LF+   S G+  ++  Y+ LI+ F K+GR+   +++
Sbjct: 628 PTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLI 687

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++   TP+  T+ SL+  L     I EA   F  ++   C P+ +TY+ LINGLCR
Sbjct: 688 LEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCR 747

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A   ++EM       G++  P+ +TY+T+  GL K G +  A  LF + K    
Sbjct: 748 VQKYNKAFVFWQEMQKQ----GLI--PNVVTYTTMISGLAKVGNITDAYSLFERFKTNGG 801

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            PD  ++ +LI G   AN   EA  +F E   +G + NV T   +++ L K   +++A+
Sbjct: 802 IPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALNKTECLEQAA 860



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 89/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           +P    Y+ +   L +    ++A EL  +M+D      V  +T+L+R          A  
Sbjct: 173 RPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALA 232

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  E+    ++P++V +NV ++   K G +D A +    +   G+RPD   Y +++   C
Sbjct: 233 LVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLC 292

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             GR+  A+ELF  ME+   +   ++Y  +I GY   +  + A  L   +  +G  P+VV
Sbjct: 293 KAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVV 352

Query: 340 TYNT 343
           ++N+
Sbjct: 353 SFNS 356



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 9/209 (4%)

Query: 137 HTIVALN-LFEEMAN-GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           H + AL  + EEM++ G G     C       + +   L +   ++ A  +   M+    
Sbjct: 120 HDLAALEKVLEEMSHLGYGLPNPAC-------AALVATLVRSRRLEDAFRVIGAMRHLKF 172

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P    YT LI     A     A  L  +M D G + +V  F  ++  L + G+M+ A  
Sbjct: 173 RPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALA 232

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L++ +    + PD  +YN  +D F   G V+ A + F  ++++G   D  SY  ++   C
Sbjct: 233 LVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLC 292

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +  A  L+ +M ++   P    YNT
Sbjct: 293 KAGRLGEAEELFGQMEAERDVPCAYAYNT 321


>gi|293333312|ref|NP_001168014.1| uncharacterized protein LOC100381738 [Zea mays]
 gi|223945505|gb|ACN26836.1| unknown [Zea mays]
          Length = 462

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 169/328 (51%), Gaps = 15/328 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +F+ L   L +N+  +  + + +++   G  PD+ +YN +I+CF    R      
Sbjct: 141 PPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALK 200

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +L     PD ++F +++K LC   R  +A  L  K+    C+ +  T+  LI+ LC
Sbjct: 201 LLKSML---CKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLC 257

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ +FE M          C PD +TYS++ +G  ++G  + A +LF  M    
Sbjct: 258 QNGQVKDAIEVFELMPKYR------CMPDIVTYSSLINGFSEQGLDEMAFDLFRSMP--- 308

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              D+ +Y + ++G C A  W++A  L  +M+ +   PN VTFN++++ LC+ G ++ A 
Sbjct: 309 CRADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAI 368

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + E M + G+ PD   YN L++G+   GR++ A +   +M    C  D  SY  ++ G 
Sbjct: 369 DVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLSTM---PCEPDTISYNSILKGL 425

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           C+ +  + A  L +EML K   P  VT+
Sbjct: 426 CRAERWKDAEKLVTEMLRKNCTPNEVTF 453



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 172/369 (46%), Gaps = 45/369 (12%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+R    P  V +F        +N   D  + L +++   G  PD+  Y+ L+N F + G
Sbjct: 33  MIRNSCHPNEV-TFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHG 91

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           RV     +L  +L     P+ V + + +KGLC   R  E   L  ++    C P+  T++
Sbjct: 92  RVDEALKLLNTML---CRPNTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDATFS 148

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLIN LC+      A+ + E+M     ++G +  PD ++Y+TI      +   D A +L 
Sbjct: 149 TLINSLCQNRLVEYAVEVLEQMQ----KYGYM--PDVVSYNTIISCFSDQARADDALKLL 202

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M      PD +++ ++++  C A  W +A  L  +M+ +  + N +TFN++++ LC+N
Sbjct: 203 KSML---CKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQN 259

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGF---------------------------- 278
           G++ +A  + ELM +    PD   Y++L++GF                            
Sbjct: 260 GQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMPCRADIFSYNAT 319

Query: 279 ----CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
               C+  R + A EL   M +  C+ +  ++ ILI+  C+   +  A+ +Y +M   GI
Sbjct: 320 LKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQMPKYGI 379

Query: 335 RPTVVTYNT 343
            P + TYN 
Sbjct: 380 TPDIFTYNA 388



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 156/351 (44%), Gaps = 61/351 (17%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD YTYN ++   C   +      ++  ++R+   P+ VTF + I+  C    +  A  L
Sbjct: 5   PDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVEL 64

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM------------------ANG 151
             ++  +GC PDV  Y+TL+NG    G    AL L   M                  A  
Sbjct: 65  LEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYNAALKGLCIAGR 124

Query: 152 NGEFGVV--------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
             E G +        C P+  T+ST+ + LC+   V+ A E+  +M+     PDVV+Y +
Sbjct: 125 WEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNT 184

Query: 204 LIRGF--------------------------------CYANDWNEAKCLFIEMMDQGVQP 231
           +I  F                                C A  W +A  L  +M+ +  + 
Sbjct: 185 IISCFSDQARADDALKLLKSMLCKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRI 244

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N +TFN++++ LC+NG++ +A  + ELM +    PD   Y++L++GF   G    A +LF
Sbjct: 245 NEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLF 304

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            SM    C  D+FSY   + G C     + A  L ++M+++   P  VT+N
Sbjct: 305 RSM---PCRADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFN 352



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 32/182 (17%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TY ++++G C A  W +A+ L  EM+     PN VTF   +   C+NG +D A 
Sbjct: 3   VAPDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAV 62

Query: 254 RLLELMIQIGVRPDASVYNTLMDGF--------------------------------CLT 281
            LLE M + G  PD  +Y+TL++GF                                C+ 
Sbjct: 63  ELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYNAALKGLCIA 122

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           GR     EL   M    C  +  ++  LIN  C+N+ +E A+ +  +M   G  P VV+Y
Sbjct: 123 GRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSY 182

Query: 342 NT 343
           NT
Sbjct: 183 NT 184



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 10/163 (6%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD + R  P    + S+N     L     +D    L   + +    P+  T+NILI+  C
Sbjct: 301 FD-LFRSMPCRADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLC 359

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           + G V+    V  ++ +   TPD  T+ +LI G   + R+ +A      L    C+PD  
Sbjct: 360 QKGLVNRAIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKF---LSTMPCEPDTI 416

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
           +Y +++ GLCR      A  L  EM   N      C P+ +T+
Sbjct: 417 SYNSILKGLCRAERWKDAEKLVTEMLRKN------CTPNEVTF 453


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 159/308 (51%), Gaps = 9/308 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           ++ + +   G  PD+ ++ +LI  F K G    G   L R+L +   P+A+ + +LI  L
Sbjct: 15  AIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCL 74

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           C    + EA +   ++    C P+V +Y  +I+G C+  +   AL    EM     E G 
Sbjct: 75  CKAGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYCKARNIEKALAFLREME----ELGH 129

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              P A  YS+I    CK G V KA ++F +M  +   PD+V +  L+ G   A   +EA
Sbjct: 130 PPTPHA--YSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEA 187

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           + LF  M  +G +P+VVT+N ++  LCK  K+DEA  LLE M Q  V P    Y TL+D 
Sbjct: 188 RELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDH 247

Query: 278 FCLTGRVNRAKELFVSMESNGC--MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
            C   R+ +A E+F  M    C      +S  ILING CK +    A  ++ EM  +GI 
Sbjct: 248 LCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGIS 307

Query: 336 PTVVTYNT 343
           PTVVTYNT
Sbjct: 308 PTVVTYNT 315



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 168/375 (44%), Gaps = 44/375 (11%)

Query: 6   YMLRM-HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           Y+ RM     P V S+NI+     K ++ +  L+  + +  +G  P  + Y+ ++  FCK
Sbjct: 86  YLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCK 145

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
            G VS    V   +      PD V F  L+ GL    +I EA  LF  + + GCKPDV T
Sbjct: 146 TGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVT 205

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD------------- 171
           Y T+I GLC+      A+ L E M   +        P  +TY+T+ D             
Sbjct: 206 YNTMIAGLCKWKKLDEAVFLLERMKQED------VSPTFVTYTTLIDHLCKFARLQQAYE 259

Query: 172 ------------------------GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
                                   GLCK     +AKE+F +M+   I+P VVTY +L+ G
Sbjct: 260 VFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEG 319

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
                   +A  L   M+DQ   PN+ T+ ++++ LCK  +++EA +LL  M   G  P 
Sbjct: 320 LLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPS 379

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
             ++  L+      GR++ A EL+  M    C + V S  IL++G  +   ++ A     
Sbjct: 380 LKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLK 439

Query: 328 EMLSKGIRPTVVTYN 342
           +M   GI P   TY+
Sbjct: 440 QMTDTGIVPDKFTYD 454



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 168/360 (46%), Gaps = 34/360 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S  +L     K+  +    S   R+   GLFP+   YN LI+C CK G ++     
Sbjct: 27  PDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAESY 86

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+ + C  P+ V++  +I G C    I +A A   ++   G  P    Y++++   C+
Sbjct: 87  LKRMPQHC-APNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCK 145

Query: 135 TGHTIVALNLFEEMANGNGEFGVV-----------------------------CKPDAIT 165
           TG+   A+++F EM     E  +V                             CKPD +T
Sbjct: 146 TGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVT 205

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+  GLCK   +D+A  L  +MK E+++P  VTYT+LI   C      +A  +F E M
Sbjct: 206 YNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVF-EKM 264

Query: 226 DQGVQP---NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
            +G  P      +  +++N LCK  +  EA  + + M   G+ P    YNTL++G   T 
Sbjct: 265 AEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTA 324

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  A EL   M       ++F+Y ILI+  CK  ++E A  L S M  KG  P++  + 
Sbjct: 325 KLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWE 384



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 159/322 (49%), Gaps = 10/322 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN+L   L + +       LF+ +NS G  PD+ TYN +I   CK  ++     +
Sbjct: 166 PDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFL 225

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG---CKPDVFTYTTLING 131
           L R+ +   +P  VT+T+LI  LC  +R+ +A  +F K+ A G   C    ++   LING
Sbjct: 226 LERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKM-AEGPCPCTEPAYSVLILING 284

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LC+      A  +F+EM  G G       P  +TY+T+ +GL     +  A EL   M D
Sbjct: 285 LCKARRPGEAKEMFQEM-RGRG-----ISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLD 338

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           +   P++ TY  LI   C  +   EA  L   M D+G  P++  + V+++ L + G++D+
Sbjct: 339 QVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDD 398

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  L + M +I  +      N L+DG    G V+ AK+    M   G + D F+Y  L+ 
Sbjct: 399 AFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVV 458

Query: 312 GYCKNKEIEGALSLYSEMLSKG 333
           G C   + + A  L  E++  G
Sbjct: 459 GLCWQGKADQARKLVEELVRDG 480



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 7/250 (2%)

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I+ L     + +A A+  +++  G  PDV ++  LI G  ++G      +  + M    G
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEA-G 59

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
            F     P+AI Y+ +   LCK G + +A E +LK   ++  P+VV+Y  +I G+C A +
Sbjct: 60  LF-----PNAILYNNLISCLCKAGMLAEA-ESYLKRMPQHCAPNVVSYNIIIDGYCKARN 113

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
             +A     EM + G  P    ++ I+   CK G + +A  +   M   G  PD   +N 
Sbjct: 114 IEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNV 173

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ G     +++ A+ELF SM S GC  DV +Y  +I G CK K+++ A+ L   M  + 
Sbjct: 174 LLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQED 233

Query: 334 IRPTVVTYNT 343
           + PT VTY T
Sbjct: 234 VSPTFVTYTT 243



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 6/217 (2%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P   P  S  IL   L K +       +F+ +   G+ P + TYN L+       ++   
Sbjct: 270 PCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDA 329

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             +   +L     P+  T+  LI  LC   ++ EA  L + +R  G  P +  +  L++ 
Sbjct: 330 MELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSR 389

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           L R G    A  L++EM+  N      C+    + + + DG+ + G VD+AK+   +M D
Sbjct: 390 LARAGRLDDAFELYKEMSRIN------CQQLVGSSNILLDGILRRGSVDEAKDFLKQMTD 443

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
             I PD  TY  L+ G C+    ++A+ L  E++  G
Sbjct: 444 TGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDG 480


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILDCGYPASLYFFNILMHRFCKEG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +    +V   I +    P  V+F +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 151 DIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM +     G+V  P+ +T++T+  G CK   VD A E++
Sbjct: 211 VLINGLCKESKMDDANGLFDEMLDK----GLV--PNGVTFTTLIAGHCKNRRVDLAMEIY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A  L  EM  +G++P+ +T+  +++  CK 
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 325 GDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK  ++     L  EM   G  P+VV+
Sbjct: 385 TMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVS 418



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 96/170 (56%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CKEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M   GVQP+V
Sbjct: 147 CKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDV 206

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+ G C   RV+ A E++  
Sbjct: 207 YTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQ 266

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 316



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 72/123 (58%)

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           + E++D G   ++  FN++M+  CK G +  A  +   + + G+RP    +NTLM+G+  
Sbjct: 124 YEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIR 183

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G ++    L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVT 243

Query: 341 YNT 343
           + T
Sbjct: 244 FTT 246


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 173/341 (50%), Gaps = 6/341 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R    P    SF  L     +    + V +L   +   G   D  T  +++   
Sbjct: 160 VFDGMTRAGVCPDER-SFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSL 218

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR         R+L     P+ V +T+ I GLC    + +A  +  ++   G KP+V
Sbjct: 219 CEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNV 278

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +T+TTLI+GLC+ G T  A  LF ++   +       KP+  TY+ +  G C+EG + +A
Sbjct: 279 YTHTTLIDGLCKIGWTERAFRLFLKLIKSSSY-----KPNVHTYTVMIGGYCREGKLARA 333

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + L ++M ++ + P+  TYT+LI G C    ++ A  L  +M  +G  PN+ T+N +++ 
Sbjct: 334 EMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDG 393

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK GK+ EA ++L +    G++ D   Y  L+   C  G +  A +LF  M  NGC  D
Sbjct: 394 FCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPD 453

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y  LI+ YC+ +++E +   + + L  G+ PT  TY +
Sbjct: 454 IEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTS 494



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 151/314 (48%), Gaps = 7/314 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
            ++   L +   +  V   F+R+  +G  P++  Y   I+  CK   V   F VL  ++ 
Sbjct: 212 TVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVG 271

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLCRTGHTI 139
               P+  T T+LI GLC       A  LF KL ++   KP+V TYT +I G CR G   
Sbjct: 272 RGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLA 331

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L   M     E G+  KP+  TY+T+  G CK G  D+A EL  KMK E   P++ 
Sbjct: 332 RAEMLLVRMV----EQGL--KPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIY 385

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY ++I GFC      EA  +      QG++ + +T+ +++ E CK G +  A  L + M
Sbjct: 386 TYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRM 445

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           ++ G  PD   Y +L+  +C   ++  +++ F      G +    +Y  +I GYCK    
Sbjct: 446 VENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRS 505

Query: 320 EGALSLYSEMLSKG 333
             AL ++  M+  G
Sbjct: 506 TMALRVFERMVQNG 519



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 149/300 (49%), Gaps = 8/300 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  ML M  +PP V ++      L K ++      + + +   GL P++YT+  LI+  C
Sbjct: 231 FRRMLEMG-TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLC 289

Query: 64  KMGRVSPGFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           K+G     F +  ++++S  + P+  T+T +I G C E ++  A  L  ++   G KP+ 
Sbjct: 290 KIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNT 349

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYTTLI G C+ G    A  L  +M     + G +  P+  TY+ + DG CK+G + +A
Sbjct: 350 NTYTTLIGGHCKGGSFDRAFELMNKMK----QEGFL--PNIYTYNAVIDGFCKKGKIQEA 403

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++      + +  D +TYT LI   C       A  LF  M++ G  P++  +  +++ 
Sbjct: 404 YKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLIST 463

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+  +M+E+ +  +  + IG+ P    Y +++ G+C  GR   A  +F  M  NGC  D
Sbjct: 464 YCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFAD 523



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 7/252 (2%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           ++       R+ EAA +  ++R+ G    V T   ++     TG  + A  +F+ M    
Sbjct: 109 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 168

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                VC PD  ++  +    C+EG V++   L   M     + D  T T ++R  C   
Sbjct: 169 -----VC-PDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKG 222

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            + +    F  M++ G  PNVV +   ++ LCK   + +A  +LE M+  G++P+   + 
Sbjct: 223 RFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHT 282

Query: 273 TLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           TL+DG C  G   RA  LF+ + +S+    +V +Y ++I GYC+  ++  A  L   M+ 
Sbjct: 283 TLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVE 342

Query: 332 KGIRPTVVTYNT 343
           +G++P   TY T
Sbjct: 343 QGLKPNTNTYTT 354



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 6/228 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  +++     P V ++ ++ G   +         L  R+   GL P+  TY  LI 
Sbjct: 298 FRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIG 357

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G     F ++ ++ +  F P+  T+ ++I G C + +I EA  +     + G K 
Sbjct: 358 GHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKF 417

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT LI   C+ GH   AL+LF+ M   NG     C PD   Y+++    C++  ++
Sbjct: 418 DKITYTILITEHCKQGHITYALDLFDRMVE-NG-----CCPDIEAYTSLISTYCQQRQME 471

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           ++++ F K     + P   TYTS+I G+C       A  +F  M+  G
Sbjct: 472 ESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNG 519


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 171/332 (51%), Gaps = 9/332 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P    +  L   L+K    +  L L + +  +G  PD+ T+N +I   C++ R+  
Sbjct: 237 HGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHE 296

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
           G  ++ R+L   FTP+ +T+  L+ GLC   ++ EA  L  K+      P+   +T LIN
Sbjct: 297 GAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPT----PNDVHFTILIN 352

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G  ++G    A     +    NG     C+PD  T++T+  GLCK+G +  A ++   M 
Sbjct: 353 GYVKSGRLDEANAFLYDKMIKNG-----CRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMS 407

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
                P+++TYT+L+ GFC  N   EA  +  EM  +G + N++ +NV++  LCKNGK+ 
Sbjct: 408 ANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVP 467

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           +A  +L  M   G +PD   +NTL+ G C   R   A  L+  M  +G + +  +Y  LI
Sbjct: 468 KALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLI 527

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + + +   I+ AL L ++ML +G     +TYN
Sbjct: 528 HAFLRGGAIQEALKLVNDMLFRGCPLDEITYN 559



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 189/402 (47%), Gaps = 85/402 (21%)

Query: 15  PPVCSFN-ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P V +FN +++G    N+ ++    L  R+   G  P+  TY +L+N  C++G+V    V
Sbjct: 276 PDVDTFNDVIYGLCRLNRIHEGA-KLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQV 334

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA-LFTKLRAFGCKPDVFTYTTLINGL 132
           +L ++     TP+ V FT LI G     R+ EA A L+ K+   GC+PDVFT+ TLI+GL
Sbjct: 335 LLNKVP----TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGL 390

Query: 133 CRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDG------------------- 172
           C+ G    A+++  +M ANG       C P+ ITY+T+ DG                   
Sbjct: 391 CKKGLMGSAVDMVNDMSANG-------CTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSA 443

Query: 173 ----------------LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
                           LCK G V KA ++  +M D+   PD+ T+ +LI G C  +   +
Sbjct: 444 KGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKED 503

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN---- 272
           A  L+ +M+  GV  N VT+N +++   + G + EA +L+  M+  G   D   YN    
Sbjct: 504 ALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIK 563

Query: 273 -------------------------------TLMDGFCLTGRVNRAKELFVSMESNGCMR 301
                                           L++G C  G+V  A EL   M   G   
Sbjct: 564 AFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAP 623

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           DV +Y  LING CK   I  A +L++++ ++GI+P  +TYNT
Sbjct: 624 DVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNT 665



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 162/330 (49%), Gaps = 11/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+N++   L          ++F  + S G+ P +YT+ +++   C +  V     +
Sbjct: 171 PTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSL 230

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    P++V + +LI  L    R+ EA  L  ++   GC PDV T+  +I GLCR
Sbjct: 231 LRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCR 290

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                    L + M            P+ ITY  + +GLC+ G VD+A+ L  K+     
Sbjct: 291 LNRIHEGAKLVDRMLFRG------FTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP---- 340

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKC-LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            P+ V +T LI G+  +   +EA   L+ +M+  G +P+V TFN +++ LCK G M  A 
Sbjct: 341 TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAV 400

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            ++  M   G  P+   Y TL+DGFC   ++  A  +   M + G   ++  Y +L+   
Sbjct: 401 DMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRAL 460

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CKN ++  AL +  EM  KG +P + T+NT
Sbjct: 461 CKNGKVPKALDMLGEMSDKGCKPDIFTFNT 490



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 169/339 (49%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++D M++ +   P V +FN L   L K     + + +   +++ G  P+L TY  L++ F
Sbjct: 367 LYDKMIK-NGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGF 425

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK  ++     VL  +    F  + + +  L++ LC   ++ +A  +  ++   GCKPD+
Sbjct: 426 CKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDI 485

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FT+ TLI GLC+      AL L+ +M       GV+   + +TY+T+     + G + +A
Sbjct: 486 FTFNTLIFGLCKVDRKEDALALYRDMLLD----GVIA--NTVTYNTLIHAFLRGGAIQEA 539

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L   M       D +TY  LI+ FC      +A  LF EM+ + + P+ ++ N+++N 
Sbjct: 540 LKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLING 599

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+ GK+  A  LL  MI  G+ PD   YN+L++G C  G +  A  LF  +++ G   D
Sbjct: 600 LCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPD 659

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +Y  LI  +C+    + A  L    +     P  VT+
Sbjct: 660 AITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTW 698



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 32/217 (14%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C+P   +Y+ + D L        A  +F +M  + + P V T+  +++  C  N+ + A 
Sbjct: 169 CEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNAC 228

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L  +M   G  PN V +  +++ L K  +++EA +LLE M  +G  PD   +N ++ G 
Sbjct: 229 SLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGL 288

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS-------------- 324
           C   R++   +L   M   G   +  +YG+L+NG C+  +++ A                
Sbjct: 289 CRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFT 348

Query: 325 ------------------LYSEMLSKGIRPTVVTYNT 343
                             LY +M+  G RP V T+NT
Sbjct: 349 ILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNT 385



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 5/181 (2%)

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            Y  + D L          +L L++K+E I      +  +++ +  AN   +A  + ++M
Sbjct: 104 VYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDM 163

Query: 225 MDQGV---QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
             +GV   +P   ++NV+++ L        A+ +   M+  GV P    +  +M   C+ 
Sbjct: 164 --KGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMV 221

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             V+ A  L   M  +GC+ +   Y  LI+   K   +  AL L  EM   G  P V T+
Sbjct: 222 NEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTF 281

Query: 342 N 342
           N
Sbjct: 282 N 282


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 167/336 (49%), Gaps = 12/336 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +FN L   LA+      +  LF  +    + P++ TY IL+   CK GRV     
Sbjct: 134 PPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALS 193

Query: 74  VLGRIL--RSCFTPDAVTFTSLIKGLCAESRIMEAAALF-TKLRA-FGCKPDVFTYTTLI 129
           VL  +    S   PD V   +++ GLC   R+ +A      ++R+  GC P+  TY  L 
Sbjct: 194 VLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLA 253

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           +  CR G+  +A  L  +M            P+A+T +TI  GLC  G V  A E F + 
Sbjct: 254 HAFCRAGNVGMACELVAKMEKER------VTPNAVTLNTIVGGLCWVGRVGAALEFFREK 307

Query: 190 KD--ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +        + VTY++L+  F + N+   A  LF EM+D+G  P+ + +  +++ L + G
Sbjct: 308 RTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAG 367

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           ++D+A  +   M + G + DA  YN L+ GFC   R+N A EL   M+  G   DV++Y 
Sbjct: 368 RLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYN 427

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            L++G CK  +      L  +M+  G RP+VVT+ T
Sbjct: 428 TLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGT 463



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 163/327 (49%), Gaps = 11/327 (3%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSI-GLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           NI+ G     +    V  + +R+ S+ G  P+  TYN L + FC+ G V     ++ ++ 
Sbjct: 214 NIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKME 273

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLINGLCRTGH 137
           +   TP+AVT  +++ GLC   R+  A   F + R      + +  TY+TL+     T +
Sbjct: 274 KERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNN 333

Query: 138 TIVALNLFEEMAN-GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
             VA+ LF EM + GN        PDAI Y T+  GL + G +D A  +   MK      
Sbjct: 334 VGVAMELFHEMVDEGN-------SPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQL 386

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D   Y  LI GFC     NEA  L  EM + G+QP+V T+N +++ LCK G       LL
Sbjct: 387 DAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELL 446

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             MI  G RP    + TL+ G+C  G+++ A  +F SM+ +G   +   Y  LI+  CK+
Sbjct: 447 GKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKS 506

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++   A+ L+ EM  K +   V T+N 
Sbjct: 507 RDTSLAIELFDEMREKHVPANVTTFNA 533



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 6/271 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++ L G      +    + LF  +   G  PD   Y  +I+   + GR+   + +   +
Sbjct: 320 TYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSM 379

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            ++ F  DA  +  LI G C   R+ EA  L  +++  G +PDV+TY TL++GLC+ G  
Sbjct: 380 KKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDF 439

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
           +    L  +M +G       C+P  +T+ T+  G CK G +D+A  +F  M +  I P+ 
Sbjct: 440 LAVDELLGKMIDGG------CRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNT 493

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V Y +LI   C + D + A  LF EM ++ V  NV TFN ++  L      ++A  L++L
Sbjct: 494 VIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDL 553

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           M +    PD    + LM+   + G  +R K 
Sbjct: 554 MREGRCTPDYVTIDILMEWLPVIGETDRLKH 584



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 135/301 (44%), Gaps = 12/301 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL----YTYNILINCFCKMGRVSP 70
           P   + N + G L         L  F+   ++  +P+      TY+ L+  F     V  
Sbjct: 279 PNAVTLNTIVGGLCWVGRVGAALEFFREKRTV--WPEARGNAVTYSTLVGAFLHTNNVGV 336

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   ++    +PDA+ + ++I GL    R+ +A ++ T ++  G + D   Y  LI 
Sbjct: 337 AMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIG 396

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G CR      A  L  EM     E G+  +PD  TY+T+  GLCK G      EL  KM 
Sbjct: 397 GFCRRKRLNEAYELLGEMK----EAGL--QPDVYTYNTLLSGLCKAGDFLAVDELLGKMI 450

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           D    P VVT+ +LI G+C     +EA  +F  M + G+QPN V +N +++ LCK+    
Sbjct: 451 DGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTS 510

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            A  L + M +  V  + + +N L+ G        +A EL   M    C  D  +  IL+
Sbjct: 511 LAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILM 570

Query: 311 N 311
            
Sbjct: 571 E 571



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 7/255 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M+    SP  +  F ++ G L +    D   S+   +   G   D   YNILI  F
Sbjct: 340 LFHEMVDEGNSPDAIMYFTMISG-LTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGF 398

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  R++  + +LG +  +   PD  T+ +L+ GLC     +    L  K+   GC+P V
Sbjct: 399 CRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSV 458

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            T+ TLI+G C+ G    AL +F  M     E G+  +P+ + Y+T+ D LCK      A
Sbjct: 459 VTFGTLIHGYCKVGQIDEALRIFRSM----DESGI--QPNTVIYNTLIDFLCKSRDTSLA 512

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ELF +M+++++  +V T+ +L++G    N   +A  L   M +    P+ VT +++M  
Sbjct: 513 IELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILMEW 572

Query: 243 LCKNGKMDEASRLLE 257
           L   G+ D     ++
Sbjct: 573 LPVIGETDRLKHFMQ 587



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 124/289 (42%), Gaps = 24/289 (8%)

Query: 70  PGFVVLGRILRSCF---TPDAVTFTSLIKGLCAESRIMEAAA---LFTKLRAFGCKPDVF 123
           P  + L   L SC     P     ++L+  + + S    A A   L   L A    PD  
Sbjct: 79  PASLALLFSLPSCHRLPPPSPRILSALLYKILSRSPSSSADAARFLRDSLAAGAPPPDTS 138

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
            + TL++ L + G       LF  M + +       +P+ +TY  +  GLCK G V  A 
Sbjct: 139 AFNTLLDALAQAGDLPGMTQLFASMRDAS------VRPNVVTYGILVKGLCKAGRVGDAL 192

Query: 184 ELFLKMK--DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD--QGVQPNVVTFNVI 239
            +   M   + ++ PDVV   +++ G C      +A     E M    G  PN VT+N +
Sbjct: 193 SVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCL 252

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF-----VSM 294
            +  C+ G +  A  L+  M +  V P+A   NT++ G C  GRV  A E F     V  
Sbjct: 253 AHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWP 312

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           E+ G   +  +Y  L+  +     +  A+ L+ EM+ +G  P  + Y T
Sbjct: 313 EARG---NAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFT 358


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 163/322 (50%), Gaps = 14/322 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+  +   L KN+  D    LF+ +   G  PD  TYN LI+  C   R+     +
Sbjct: 144 PTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDL 203

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ + F PD +TFT+LI+GLC   RI EA  LF  +   GC PD+ T+T L++ LC 
Sbjct: 204 LTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCI 263

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL++              C    I Y+ I   L +    D+A  L  KM    +
Sbjct: 264 RRKLRPALSVVRNYP--------ACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGV 315

Query: 195 NPDVVTYTSLIRGFCYANDWNE---AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
            P+VVTYT+  +G     DW E   A   F  M++QG++P++V +NV+++  CK  ++D 
Sbjct: 316 APNVVTYTAFFKGL---GDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDM 372

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A +++  M Q G+ P+   YNTL+   C  G+V    EL  +M S G   DV ++  L+ 
Sbjct: 373 AEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVA 432

Query: 312 GYCKNKEIEGALSLYSEMLSKG 333
           G  +  +++ A S  +  +S+G
Sbjct: 433 GLFRVGQVDAAYSFLNLAMSQG 454



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 177/397 (44%), Gaps = 78/397 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N++   L K +     +  F+ +      PD+ TYN L+   CK GRV+    +
Sbjct: 43  PDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSL 98

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G +  +  TP  VT+T+LI   C   +   A  L   + +  C P V++Y ++INGLC+
Sbjct: 99  FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 158

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LFEEM          CKPD +TY+T+  GLC +  + +AK+L   M + + 
Sbjct: 159 NRKVDQAYQLFEEMKLAG------CKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSF 212

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV---------------- 238
            PD +T+T+LI G C  +   EA  LF  M  QG  P++VT  V                
Sbjct: 213 QPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALS 272

Query: 239 -----------------IMNELCKNGKMDEASRLLE------------------------ 257
                            I  EL +    D A+RLL+                        
Sbjct: 273 VVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDW 332

Query: 258 -----------LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
                       M++ G+ PD   YN L+DGFC   R++ A+++   M+ +G   ++ +Y
Sbjct: 333 KEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTY 392

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             L+  +C+  ++E    L   M+S+G +P V T++T
Sbjct: 393 NTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWST 429



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 169/397 (42%), Gaps = 78/397 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  L   L +    D   S    +    L PD++TYN++I+  CK  R+S     
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAI-- 65

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG----------------- 117
                 +   PD VT+ +L+ GLC   R+ +A +LF  +   G                 
Sbjct: 66  --EFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 123

Query: 118 ------------------CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                             C P V++Y ++INGLC+      A  LFEEM          C
Sbjct: 124 MCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAG------C 177

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           KPD +TY+T+  GLC +  + +AK+L   M + +  PD +T+T+LI G C  +   EA  
Sbjct: 178 KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFV 237

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKM------------------------------ 249
           LF  M  QG  P++VT  V++++LC   K+                              
Sbjct: 238 LFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELGRR 297

Query: 250 ---DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
              D A+RLL+ M + GV P+   Y     G        RA   F  M   G   D+ +Y
Sbjct: 298 RGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAY 357

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L++G+CK   ++ A  +   M   G+ P +VTYNT
Sbjct: 358 NVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNT 394



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 101/189 (53%), Gaps = 4/189 (2%)

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
           F   CKP+A++Y  +   LC+ G +DKA     +M  E + PDV TY  +I   C A   
Sbjct: 2   FSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRI 61

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           + A    IE  +   +P+VVT+N ++  LCKNG++ +A  L   M   G+ P    Y TL
Sbjct: 62  SRA----IEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTL 117

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +D FC   +   A  L   M S  C   V+SY  +ING CKN++++ A  L+ EM   G 
Sbjct: 118 IDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGC 177

Query: 335 RPTVVTYNT 343
           +P  VTYNT
Sbjct: 178 KPDRVTYNT 186



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           +  Q  +PN +++  ++  LC+ GK+D+A   +  M +  + PD   YN ++D  C   R
Sbjct: 1   IFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARR 60

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++RA E F +M       DV +Y  L+ G CKN  +  A SL+  M   GI P+ VTY T
Sbjct: 61  ISRAIEFFETMPEP----DVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTT 116


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 167/330 (50%), Gaps = 7/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S N L    AK    D V   FK +   G  P ++TYNI+I+C CK G V     +
Sbjct: 58  PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGL 117

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD VT+ S+I G     R+ +    F +++   C+PDV TY  LIN  C+
Sbjct: 118 FEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCK 177

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G     L  F EM   NG      KP+ ++YST+ D  CKEG + +A + ++ M+   +
Sbjct: 178 FGKLPKGLEFFREMKR-NG-----LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 231

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TYTSLI  +C   + ++A  L  EM+  GV+ NVVT+  +++ LC      E   
Sbjct: 232 VPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLH 291

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYGILINGY 313
           LL+ M+++ ++     +  L+DG C    V++A + F  + ++ G   +   Y  +I+G 
Sbjct: 292 LLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGL 351

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK  ++E A +L+ +M  KG+ P    Y +
Sbjct: 352 CKGNQVEAATTLFEQMAQKGLVPDRTAYTS 381



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 158/326 (48%), Gaps = 7/326 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +     K    D  +  F+ +  +   PD+ TYN LINCFCK G++  G   
Sbjct: 128 PDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEF 187

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R+   P+ V++++L+   C E  + +A   +  +R  G  P+ +TYT+LI+  C+
Sbjct: 188 FREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCK 247

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  L  EM     E+ VV      TY+ + DGLC      +   L  +M + +I
Sbjct: 248 IGNLSDAFRLANEMLQVGVEWNVV------TYTALIDGLCGWENPTEGLHLLDEMVELDI 301

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMM-DQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              VVT+  LI G C     ++A   F  +  D G+Q N   +  +++ LCK  +++ A+
Sbjct: 302 KVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAAT 361

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L E M Q G+ PD + Y +LMDG    G V  A  L   M   G   D+ +Y  L+ G 
Sbjct: 362 TLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGL 421

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVV 339
               +++ A S   EM+ +GI P  V
Sbjct: 422 SHCNQLQKARSFLEEMIGEGIHPDEV 447



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 170/332 (51%), Gaps = 7/332 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P V ++NI+  C+ K    +    LF+ +   GL PD  TYN +I+ F K+GR+    
Sbjct: 91  AKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTV 150

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
                +   C  PD +T+ +LI   C   ++ +    F +++  G KP+V +Y+TL++  
Sbjct: 151 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAF 210

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A+  + +M       G+V  P+  TY+++ D  CK G +  A  L  +M   
Sbjct: 211 CKEGMMQQAIKFYVDMR----RVGLV--PNEYTYTSLIDAYCKIGNLSDAFRLANEMLQV 264

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            +  +VVTYT+LI G C   +  E   L  EM++  ++  VVTF V+++ LCKN  + +A
Sbjct: 265 GVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKA 324

Query: 253 SRLL-ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
                 +    G++ +A++Y  ++DG C   +V  A  LF  M   G + D  +Y  L++
Sbjct: 325 IDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMD 384

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G  K   +  AL+L  +M+  G++  ++ Y +
Sbjct: 385 GNFKQGNVLEALALRDKMVETGMKLDLLAYTS 416



 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 133/262 (50%), Gaps = 6/262 (2%)

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R+   P    F +L   L     + EA   F+K++ F   P   +   L++   + G T 
Sbjct: 18  RNVCVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTD 77

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
                F++M       G   KP   TY+ + D +CKEG V+ A+ LF +MK   + PD V
Sbjct: 78  GVKRFFKDM------IGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTV 131

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY S+I GF      ++  C F EM D   +P+V+T+N ++N  CK GK+ +       M
Sbjct: 132 TYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREM 191

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + G++P+   Y+TL+D FC  G + +A + +V M   G + + ++Y  LI+ YCK   +
Sbjct: 192 KRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNL 251

Query: 320 EGALSLYSEMLSKGIRPTVVTY 341
             A  L +EML  G+   VVTY
Sbjct: 252 SDAFRLANEMLQVGVEWNVVTY 273



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 140/293 (47%), Gaps = 8/293 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P    ++ L +    +G V        ++ R    P   +   L+       +       
Sbjct: 23  PGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 82

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCKPDAITYST 168
           F  +   G KP VFTY  +I+ +C+ G    A  LFEEM     +F G++  PD +TY++
Sbjct: 83  FKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEM-----KFRGLI--PDTVTYNS 135

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           + DG  K G +D     F +MKD    PDV+TY +LI  FC      +    F EM   G
Sbjct: 136 MIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNG 195

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           ++PNVV+++ +++  CK G M +A +    M ++G+ P+   Y +L+D +C  G ++ A 
Sbjct: 196 LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAF 255

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            L   M   G   +V +Y  LI+G C  +     L L  EM+   I+ TVVT+
Sbjct: 256 RLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTF 308



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 138/276 (50%), Gaps = 5/276 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++ L     K       +  +  +  +GL P+ YTY  LI+ +CK+G +S  F +
Sbjct: 198 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRL 257

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+     + VT+T+LI GLC      E   L  ++     K  V T+  LI+GLC+
Sbjct: 258 ANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCK 317

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A++ F  ++N   +FG+  + +A  Y+ + DGLCK   V+ A  LF +M  + +
Sbjct: 318 NKLVSKAIDYFGRISN---DFGL--QANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGL 372

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   YTSL+ G     +  EA  L  +M++ G++ +++ +  ++  L    ++ +A  
Sbjct: 373 VPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARS 432

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            LE MI  G+ PD  +  +++      G +N A EL
Sbjct: 433 FLEEMIGEGIHPDEVLCISVLKKHYELGCINEAVEL 468



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 95/186 (51%)

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
           VC P    +  +   L   G V++A + F KMK   + P   +   L+  F      +  
Sbjct: 20  VCVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGV 79

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           K  F +M+  G +P V T+N++++ +CK G ++ A  L E M   G+ PD   YN+++DG
Sbjct: 80  KRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDG 139

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           F   GR++     F  M+   C  DV +Y  LIN +CK  ++   L  + EM   G++P 
Sbjct: 140 FGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPN 199

Query: 338 VVTYNT 343
           VV+Y+T
Sbjct: 200 VVSYST 205



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 6/226 (2%)

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           C P    +  L + L   G    A+  F +M      F V   P   + + +     K G
Sbjct: 21  CVPGFGVFDALFSVLIDLGMVEEAIQCFSKMK----RFRVF--PKTRSCNGLLHKFAKLG 74

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
             D  K  F  M      P V TY  +I   C   D   A+ LF EM  +G+ P+ VT+N
Sbjct: 75  KTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYN 134

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +++   K G++D+     E M  +   PD   YN L++ FC  G++ +  E F  M+ N
Sbjct: 135 SMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRN 194

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   +V SY  L++ +CK   ++ A+  Y +M   G+ P   TY +
Sbjct: 195 GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 240


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 172/337 (51%), Gaps = 6/337 (1%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F  + R H    P  +   +   L K K++  V   +K +   G    LY +NIL++ FC
Sbjct: 88  FFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFC 147

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G +     V   I +    P  V+F +L+ G      + E   L + + A G +PDV+
Sbjct: 148 KEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVY 207

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY+ LINGLC+      A  LF EM +     G+V  P+ +T++T+ DG CK G VD A 
Sbjct: 208 TYSVLINGLCKESKMDEANELFNEMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAM 261

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           E++ ++  +  +PD++TY +LI G C   D  +A+ L  EM  + ++P+ +T+  +++  
Sbjct: 262 EIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGS 321

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK G ++ A    + MI+  +R D   Y  L+ G C  GR   A+++   M S G   D 
Sbjct: 322 CKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDN 381

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            +Y ++IN +CK  +++    L  EM   G  P VVT
Sbjct: 382 GTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVPCVVT 418



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 6/293 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D+Y ++ LI  + + G +              F     T   +++ L            +
Sbjct: 65  DIYVFSGLITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            ++   G    ++ +  L++  C+ G   +A ++F+ +     ++G+  +P  ++++T+ 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAIT----KWGL--RPSVVSFNTLM 178

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
            G  + G +D+   L   M    + PDV TY+ LI G C  +  +EA  LF EM+D G+ 
Sbjct: 179 SGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLV 238

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN VTF  +++  CKNG++D A  + + ++  G  PD   YNTL+ G C  G + +A++L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDL 298

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              M       D  +Y  LI+G CK  ++E A      M+ + IR   V Y  
Sbjct: 299 IDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTA 351



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTI 169
           + +Y T+I+ LC     + A +L + + +  G+      F  +       + D   +S +
Sbjct: 13  LHSYCTMIHFLCTHQMLLEAKSLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYVFSGL 72

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E F   ++        T   ++        +      + E+++ G 
Sbjct: 73  ITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGY 132

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK G+M  A  + + + + G+RP    +NTLM G+   G ++    
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFR 192

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  +++ A  L++EML  G+ P  VT+ T
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTT 246


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 171/334 (51%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +     K K++ +V   +K +   G    LY +NIL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +L+ G      + E   L + +   G +PDV+TY+
Sbjct: 151 EMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM  GNG       P+ +T++T+ DG CK G +D A E +
Sbjct: 211 VLINGLCKESKMNDANELFDEMI-GNG-----LVPNGVTFTTLIDGHCKTGSIDLAMEAY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +  +PD++TY +LI G C   D  +A+ L  EM  +G++P+ +T+  +++  CK 
Sbjct: 265 KEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A +  + MI+  +R D   Y  L+ G C  G+   A+++   M S G   D  +Y
Sbjct: 325 GDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK  +++    L  EM   G  P VVT
Sbjct: 385 TMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 98/171 (57%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CKEG +  A+ +F ++    + P VV++ +L+ G+    D +E   L   M   G+QP+
Sbjct: 146 FCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPD 205

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V T++V++N LCK  KM++A+ L + MI  G+ P+   + TL+DG C TG ++ A E + 
Sbjct: 206 VYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYK 265

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M   G   D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 266 EMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNG------------EFGVVCKPDAITYSTI 169
           + +Y T+I+ LC       A NL + + +  G            E     + D   +S +
Sbjct: 13  LHSYCTMIHFLCTHQMLPEAKNLIQIVVSRKGKDSASAVFEAILEAKGAQRSDVYVFSGL 72

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E F   ++        T   ++  F     +      + E+++ G 
Sbjct: 73  ITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEILECGY 132

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK G+M  A  + + + + G+RP    +NTLM+G+   G ++    
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M  +G   DV++Y +LING CK  ++  A  L+ EM+  G+ P  VT+ T
Sbjct: 193 LKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTT 246


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 175/342 (51%), Gaps = 9/342 (2%)

Query: 3   IFDYMLRMHPSPPP-VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           + D     HP+  P   S+ ++   L  ++  D  ++L + + + G+  D+ TY  LI  
Sbjct: 100 LADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRG 159

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C    +     +LG +  S   P+ + ++ L++G C   R  + + +F ++   G +PD
Sbjct: 160 LCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPD 219

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V  +T  I+ LC+ G    A+ + + M     E      P+ +TY+ + + LCKEG V +
Sbjct: 220 VIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLE------PNVVTYNVLINCLCKEGSVRE 273

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM--DQGVQPNVVTFNVI 239
           A  L  +M D+ + PDVVTY +LI G     + + A  L  EM+  D  V+P+VVTFN +
Sbjct: 274 ALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSV 333

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LCK G+M +A  + E+M + G   +   YN L+ GF    +VN A  L   + S+G 
Sbjct: 334 IHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGL 393

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             D F+Y ILING+ K  E++ A      M  +GIR  +  Y
Sbjct: 394 EPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHY 435



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 170/342 (49%), Gaps = 12/342 (3%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKN----KHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +L   P      S+NI+   L +     +   ++L+   R       P+  +Y +++   
Sbjct: 66  LLSALPDVRDAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGL 125

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   R      +L  +  S    D VT+ +LI+GLC  + +  A  L  ++   G  P+V
Sbjct: 126 CASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNV 185

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y+ L+ G CR+G       +FEEM+      GV  +PD I ++   D LCK+G + KA
Sbjct: 186 IVYSCLLRGYCRSGRWQDVSKVFEEMSR----LGV--EPDVIMFTGFIDDLCKKGRIGKA 239

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++   M    + P+VVTY  LI   C      EA  L  EM D+GV P+VVT+N ++  
Sbjct: 240 VKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAG 299

Query: 243 LCKNGKMDEASRLLELMIQ--IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           L    +MD A  LLE MIQ    V PD   +N+++ G C  GR+ +A  +   M   GCM
Sbjct: 300 LSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCM 359

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++ +Y  LI G+ +  ++  A++L SE++S G+ P   TY+
Sbjct: 360 CNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYS 401



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 169/363 (46%), Gaps = 38/363 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ L     ++  +  V  +F+ ++ +G+ PD+  +   I+  CK GR+     V
Sbjct: 183 PNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKV 242

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    P+ VT+  LI  LC E  + EA AL  ++   G  PDV TY TLI GL  
Sbjct: 243 KDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSG 302

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ L EEM  G+     + +PD +T++++  GLCK G + +A  +   M +   
Sbjct: 303 VLEMDGAMGLLEEMIQGD----TLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGC 358

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++VTY  LI GF   +  N A  L  E++  G++P+  T+++++N   K  ++D A  
Sbjct: 359 MCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEM 418

Query: 255 LLELMIQIGVRP----------------------------------DASVYNTLMDGFCL 280
            L  M Q G+R                                   DA  Y+T+M G C 
Sbjct: 419 FLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGLDAVAYSTMMYGACK 478

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +G +  AK+L   M   G   D  +Y ILIN + K  ++E A  +  +M + G  P V  
Sbjct: 479 SGDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAV 538

Query: 341 YNT 343
           +++
Sbjct: 539 FDS 541



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 155/322 (48%), Gaps = 9/322 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L  CL K       L+L   ++  G+ PD+ TYN LI     +  +     +
Sbjct: 253 PNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGL 312

Query: 75  LGRILR--SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           L  +++  +   PD VTF S+I GLC   R+ +A ++   +   GC  ++ TY  LI G 
Sbjct: 313 LEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGF 372

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            R     +A+NL  E+ +   E      PD+ TYS + +G  K   VD+A+     M   
Sbjct: 373 LRVHKVNMAMNLMSELISSGLE------PDSFTYSILINGFSKLWEVDRAEMFLRTMTQR 426

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            I  ++  Y  L+   C      +A  LF EM D     + V ++ +M   CK+G +  A
Sbjct: 427 GIRAELFHYIPLLAALCQLGMMEQAMVLFNEM-DMNCGLDAVAYSTMMYGACKSGDIKAA 485

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +LL+ M+  G+ PDA  Y+ L++ F   G +  A+ +   M ++G + DV  +  LI G
Sbjct: 486 KQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKG 545

Query: 313 YCKNKEIEGALSLYSEMLSKGI 334
           Y    +I   L L  EM +K +
Sbjct: 546 YSAEGQINKILDLIHEMRAKNV 567



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 143/280 (51%), Gaps = 17/280 (6%)

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV---FT 124
           V P    L  +LR      A      ++     + + EA +L + L      PDV    +
Sbjct: 29  VRPAAPFLAVLLRRGRADAAALLNRRLRA----APVTEACSLLSAL------PDVRDAVS 78

Query: 125 YTTLINGLCRTGHTI-VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           Y  ++  LCR G  +  AL+L  +M+    E     +P+A++Y+ +  GLC     D+A 
Sbjct: 79  YNIVLAALCRRGGDLRQALSLLADMSR---EAHPAARPNAVSYTMVMRGLCASRRTDEAV 135

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L   M+   +  DVVTY +LIRG C A + + A  L  EM   GV PNV+ ++ ++   
Sbjct: 136 ALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGY 195

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C++G+  + S++ E M ++GV PD  ++   +D  C  GR+ +A ++   M   G   +V
Sbjct: 196 CRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNV 255

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +Y +LIN  CK   +  AL+L +EM  KG+ P VVTYNT
Sbjct: 256 VTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNT 295



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 140/265 (52%), Gaps = 14/265 (5%)

Query: 86  DAVTFTSLIKGLCAESRIMEAA----ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
           DAV++  ++  LC     +  A    A  ++      +P+  +YT ++ GLC +  T  A
Sbjct: 75  DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEA 134

Query: 142 LNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           + L   M A+G        + D +TY T+  GLC    +D A EL  +M    ++P+V+ 
Sbjct: 135 VALLRSMQASG-------VRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIV 187

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y+ L+RG+C +  W +   +F EM   GV+P+V+ F   +++LCK G++ +A ++ ++M+
Sbjct: 188 YSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMV 247

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           Q G+ P+   YN L++  C  G V  A  L   M+  G   DV +Y  LI G     E++
Sbjct: 248 QRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMD 307

Query: 321 GALSLYSEMLSKG--IRPTVVTYNT 343
           GA+ L  EM+     + P VVT+N+
Sbjct: 308 GAMGLLEEMIQGDTLVEPDVVTFNS 332



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 162/363 (44%), Gaps = 44/363 (12%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++  L   L      D  L L   +   G+ P++  Y+ L+  +C+ GR      V  
Sbjct: 150 VVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFE 209

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + R    PD + FT  I  LC + RI +A  +   +   G +P+V TY  LIN LC+ G
Sbjct: 210 EMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEG 269

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM--KDENI 194
               AL L  EM +     GV   PD +TY+T+  GL     +D A  L  +M   D  +
Sbjct: 270 SVREALALRNEMDDK----GVA--PDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLV 323

Query: 195 NPDVVTYTSLIRGFC-----------------------------------YANDWNEAKC 219
            PDVVT+ S+I G C                                     +  N A  
Sbjct: 324 EPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMN 383

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  E++  G++P+  T+++++N   K  ++D A   L  M Q G+R +   Y  L+   C
Sbjct: 384 LMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALC 443

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G + +A  LF  M+ N C  D  +Y  ++ G CK+ +I+ A  L  +ML +G+ P  V
Sbjct: 444 QLGMMEQAMVLFNEMDMN-CGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAV 502

Query: 340 TYN 342
           TY+
Sbjct: 503 TYS 505


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 170/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+N++   L K       + LF  +    + P+  TYN +I+   K G +  GF +
Sbjct: 186 PNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRL 245

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++LR    P+ +T+  L+ GLC   R+ E AA+  ++ +    PD FTY+ L +G  R
Sbjct: 246 WSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSR 305

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG +   L+LFEE      + G      A T S + +GLCK+G + KA+E+   + +  +
Sbjct: 306 TGDSQTMLSLFEESVKKGVKIG------AYTCSILLNGLCKDGKISKAEEVLQTLVNSGL 359

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
               V Y +LI G+C   D   A  +F +M  + ++P+ +T+N ++N L K  ++ EA  
Sbjct: 360 LQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHD 419

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  M + GV P    +NTL+D +   G++ +   +   M+  G   +V SYG ++N +C
Sbjct: 420 LVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFC 479

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           KN +I  A+++  +M  K + P    YN 
Sbjct: 480 KNGKILEAVAILDDMFIKDVLPGAQVYNA 508



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 175/343 (51%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F ++  MLR H   P V ++N+L   L +        ++   + S  + PD +TY+IL +
Sbjct: 243 FRLWSQMLR-HGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFD 301

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              + G       +    ++      A T + L+ GLC + +I +A  +   L   G   
Sbjct: 302 GHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQ 361

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               Y TLING C+ G    A ++F++M +       + +PD ITY+ + +GL K   + 
Sbjct: 362 TTVIYNTLINGYCQIGDLEGAFSIFQQMKS------RLIRPDHITYNALINGLGKVERIT 415

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A +L ++M+   +NP V T+ +LI  +  A    +   +  +M ++G++PNVV++  I+
Sbjct: 416 EAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIV 475

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N  CKNGK+ EA  +L+ M    V P A VYN ++D +   G  ++A  L   M+S+G  
Sbjct: 476 NAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVP 535

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             + +Y +LI G CK  +I  A  L   + + G+ P V++YNT
Sbjct: 536 PSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNT 578



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 161/327 (49%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ILF   ++     T+LSLF+     G+    YT +IL+N  CK G++S    V
Sbjct: 291 PDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEV 350

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ S      V + +LI G C    +  A ++F ++++   +PD  TY  LINGL +
Sbjct: 351 LQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGK 410

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A +L  EM   NG       P   T++T+ D   + G ++K   +   M+++ +
Sbjct: 411 VERITEAHDLVIEMEK-NG-----VNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGL 464

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VV+Y S++  FC      EA  +  +M  + V P    +N I++   + G  D+A  
Sbjct: 465 KPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFM 524

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M   GV P    YN L+ G C   +++ A+EL  S+ + G   DV SY  LI+  C
Sbjct: 525 LAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACC 584

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
                + AL L  EM   GI+P+  TY
Sbjct: 585 YRSNTDRALELEKEMWKCGIKPSPRTY 611



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 6/322 (1%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +IL   L K+        + + L + GL      YN LIN +C++G +   F +  ++  
Sbjct: 332 SILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKS 391

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD +T+ +LI GL    RI EA  L  ++   G  P V T+ TLI+   R G    
Sbjct: 392 RLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEK 451

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
              +  +M     E G+  KP+ ++Y +I +  CK G + +A  +   M  +++ P    
Sbjct: 452 CFIILSDMQ----EKGL--KPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQV 505

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y ++I  +      ++A  L  +M   GV P++VT+N+++  LCK  ++ EA  LL+ + 
Sbjct: 506 YNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLR 565

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             G+ PD   YNTL+   C     +RA EL   M   G      +Y +L +       + 
Sbjct: 566 NYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVH 625

Query: 321 GALSLYSEMLSKGIRPTVVTYN 342
              +LY +ML K + P    YN
Sbjct: 626 EMENLYQQMLDKDVVPCSGIYN 647



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 139/263 (52%), Gaps = 13/263 (4%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK----PDVFTYTTLINGLCRTGHTIV 140
           PD  T+   ++       + EA  +   LR  GC     P+ F+Y  +I GL + G    
Sbjct: 150 PDTFTWNKAVQACVVAGDLDEAVGM---LRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCD 206

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A+ LF+EM     E  VV  P+ ITY+T+ DG  K+G ++    L+ +M    + P+V+T
Sbjct: 207 AVKLFDEMP----EKAVV--PNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVIT 260

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y  L+ G C A    E   +  EM  + + P+  T++++ +   + G       L E  +
Sbjct: 261 YNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESV 320

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + GV+  A   + L++G C  G++++A+E+  ++ ++G ++    Y  LINGYC+  ++E
Sbjct: 321 KKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLE 380

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
           GA S++ +M S+ IRP  +TYN 
Sbjct: 381 GAFSIFQQMKSRLIRPDHITYNA 403



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 8/314 (2%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI-LRSCFTPDAVT 89
           +H D V   F+ L +    PD +T+N  +      G +     +L R+       P+A +
Sbjct: 132 RHAD-VRGAFELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFS 190

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           +  +I GL       +A  LF ++      P+  TY T+I+G  + G       L+ +M 
Sbjct: 191 YNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQML 250

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
                     KP+ ITY+ +  GLC+ G + +   +  +M    + PD  TY+ L  G  
Sbjct: 251 RHG------LKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHS 304

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
              D      LF E + +GV+    T ++++N LCK+GK+ +A  +L+ ++  G+     
Sbjct: 305 RTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTV 364

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
           +YNTL++G+C  G +  A  +F  M+S     D  +Y  LING  K + I  A  L  EM
Sbjct: 365 IYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEM 424

Query: 330 LSKGIRPTVVTYNT 343
              G+ P+V T+NT
Sbjct: 425 EKNGVNPSVETFNT 438



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 149/315 (47%), Gaps = 6/315 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L     +    +   S+F+++ S  + PD  TYN LIN   K+ R++    ++  + 
Sbjct: 366 YNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEME 425

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           ++   P   TF +LI       ++ +   + + ++  G KP+V +Y +++N  C+ G  +
Sbjct: 426 KNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKIL 485

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A+ + ++M      F     P A  Y+ I D   + G  D+A  L  KMK   + P +V
Sbjct: 486 EAVAILDDM------FIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIV 539

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY  LI+G C  +  +EA+ L   + + G+ P+V+++N +++  C     D A  L + M
Sbjct: 540 TYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEM 599

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + G++P    Y  L       GRV+  + L+  M     +     Y I+++ Y K  E 
Sbjct: 600 WKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEE 659

Query: 320 EGALSLYSEMLSKGI 334
               +L  EM  KGI
Sbjct: 660 SKVEALRKEMSDKGI 674



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 140/298 (46%), Gaps = 7/298 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F IF  M      P  + ++N L   L K +       L   +   G+ P + T+N LI+
Sbjct: 383 FSIFQQMKSRLIRPDHI-TYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLID 441

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            + + G++   F++L  +      P+ V++ S++   C   +I+EA A+   +      P
Sbjct: 442 AYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLP 501

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               Y  +I+     G T  A  L E+M +          P  +TY+ +  GLCK+  + 
Sbjct: 502 GAQVYNAIIDAYIECGSTDQAFMLAEKMKSSG------VPPSIVTYNLLIKGLCKQSQIS 555

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A+EL   +++  + PDV++Y +LI   CY ++ + A  L  EM   G++P+  T+ ++ 
Sbjct: 556 EAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLF 615

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           + L   G++ E   L + M+   V P + +YN ++D +   G  ++ + L   M   G
Sbjct: 616 SSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKG 673



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 6/250 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN L     +    +    +   +   GL P++ +Y  ++N FCK G++     +
Sbjct: 431 PSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAI 490

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P A  + ++I          +A  L  K+++ G  P + TY  LI GLC+
Sbjct: 491 LDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCK 550

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L + + N    +G+   PD I+Y+T+    C     D+A EL  +M    I
Sbjct: 551 QSQISEAEELLDSLRN----YGLA--PDVISYNTLISACCYRSNTDRALELEKEMWKCGI 604

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P   TY  L      A   +E + L+ +M+D+ V P    +N++++   K G+  +   
Sbjct: 605 KPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEA 664

Query: 255 LLELMIQIGV 264
           L + M   G+
Sbjct: 665 LRKEMSDKGI 674


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 161/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ +L   L   +  D  + LF ++ S    PD  TY  L++ F   G +     +
Sbjct: 297 PDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKI 356

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +    + PD VTFT L+  LC   RI EA  L   +R  G  P++ TY TLI+GL R
Sbjct: 357 WTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLR 416

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL+LF  M +     GV  +P A TY  + D   K G   KA E F KMK   I
Sbjct: 417 ANRLDDALDLFSNMES----LGV--EPTAYTYILLIDYHGKSGHPGKALETFEKMKARGI 470

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P++V   + +          EAK +F E+   G+ P+ VT+N++M    K G++DEA +
Sbjct: 471 APNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIK 530

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL  M ++   PD  V N+L+D     GRV  A ++F  ME       V +Y IL+ G  
Sbjct: 531 LLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLG 590

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  +I+ A+ L+  M   G  P  +T+NT
Sbjct: 591 KEGQIQKAVQLFESMNGHGCSPNTITFNT 619



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 181/343 (52%), Gaps = 9/343 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C+F  M      P  V ++  L    +   H D V  ++  + + G  PD+ T+ IL+N 
Sbjct: 320 CLFTKMKSSSHKPDKV-TYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNA 378

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK GR++  F +L  + +    P+  T+ +LI GL   +R+ +A  LF+ + + G +P 
Sbjct: 379 LCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPT 438

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            +TY  LI+   ++GH   AL  FE+M A G     V C  +A  YS     L + G + 
Sbjct: 439 AYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVAC--NASLYS-----LAEMGRLG 491

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AK +F ++K   + PD VTY  +++ +      +EA  L  EM     +P+V+  N ++
Sbjct: 492 EAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLI 551

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L K G+++EA ++   M ++ + P    YN L+ G    G++ +A +LF SM  +GC 
Sbjct: 552 DTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCS 611

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  ++  L++  CKN E++ AL ++ +M +   RP V+T+NT
Sbjct: 612 PNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNT 654



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 171/330 (51%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F+ L     K ++  TV+ L + + S+GL P++YTY I I    + G++   + +
Sbjct: 227 PSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRI 286

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + R+      PD VT+T LI  LC   ++ +A  LFTK+++   KPD  TY TL++    
Sbjct: 287 MKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSD 346

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            GH      ++ EM A+G         PD +T++ + + LCK G +++A +L   M+ + 
Sbjct: 347 CGHLDKVEKIWTEMEADGYA-------PDVVTFTILVNALCKAGRINEAFDLLDTMRKQG 399

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P++ TY +LI G   AN  ++A  LF  M   GV+P   T+ ++++   K+G   +A 
Sbjct: 400 VLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKAL 459

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
              E M   G+ P+    N  +      GR+  AK +F  ++S+G   D  +Y +++  Y
Sbjct: 460 ETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCY 519

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K  +++ A+ L SEM      P V+  N+
Sbjct: 520 SKVGQVDEAIKLLSEMSKVQCEPDVIVINS 549



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 167/341 (48%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R       V ++ I+F  L          S  +++   G   + Y+YN LI+  
Sbjct: 146 VFDLMQR-QIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFL 204

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            + G       V  R++     P   TF++L+        I     L  ++ + G +P++
Sbjct: 205 LQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNI 264

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           +TYT  I  L R G    A  + + M +        C PD +TY+ + D LC    +D A
Sbjct: 265 YTYTICIRVLGRDGKIDEAYRIMKRMDDDG------CGPDVVTYTVLIDALCTARKLDDA 318

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             LF KMK  +  PD VTY +L+  F      ++ + ++ EM   G  P+VVTF +++N 
Sbjct: 319 MCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNA 378

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G+++EA  LL+ M + GV P+   YNTL+ G     R++ A +LF +MES G    
Sbjct: 379 LCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPT 438

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++Y +LI+ + K+     AL  + +M ++GI P +V  N 
Sbjct: 439 AYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNA 479



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 168/327 (51%), Gaps = 6/327 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P +  +N+L     +  + +   +LF+ + S G  PD +TYN LI+   K G+++  F +
Sbjct: 788  PTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDL 847

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               +L     P+ +T+  +I  L   +R+ +A  L+  L +    P   T+  LI+GL +
Sbjct: 848  YDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLK 907

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            +G     L+   EM +G   +G  C+P++  Y+ + +G  K G VD A E F +M  E I
Sbjct: 908  SGR----LDDAHEMFDGMVHYG--CRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGI 961

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PD+ +YT L+   C A   ++A   F ++   G+ P++V +N+++N L ++ + +EA  
Sbjct: 962  RPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALS 1021

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L   M   G+ PD   YN+L+    + G +  A +++  ++  G   +VF+Y  LI GY 
Sbjct: 1022 LFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYT 1081

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +   E A  +Y +M+  G  P   T+
Sbjct: 1082 LSGNSELAYGIYKKMMVGGCDPNTGTF 1108



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 146/287 (50%), Gaps = 7/287 (2%)

Query: 58   LINCFCKMGRVSPGFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
            +I   CK  + S    V  +  +     P    +  LI G      +  A  LF ++++ 
Sbjct: 760  IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819

Query: 117  GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
            GC PD FTY +LI+   ++G      +L++EM          CKP+ ITY+ +   L K 
Sbjct: 820  GCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRG------CKPNTITYNMVISNLVKS 873

Query: 177  GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
              +DKA +L+  +   + +P   T+  LI G   +   ++A  +F  M+  G +PN   +
Sbjct: 874  NRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIY 933

Query: 237  NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            N+++N   K G +D A    + M++ G+RPD   Y  L+D  C+ GRV+ A   F  ++ 
Sbjct: 934  NILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQ 993

Query: 297  NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             G   D+ +Y ++ING  +++  E ALSL+ EM ++GI P + TYN+
Sbjct: 994  AGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNS 1040



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 163/324 (50%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+N L   L ++      L +++R+ S GL P L T++ L+    K   +     +L  +
Sbjct: 196 SYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEM 255

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+  T+T  I+ L  + +I EA  +  ++   GC PDV TYT LI+ LC     
Sbjct: 256 ESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKL 315

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+ LF +M + +       KPD +TY T+ D     G +DK ++++ +M+ +   PDV
Sbjct: 316 DDAMCLFTKMKSSSH------KPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDV 369

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VT+T L+   C A   NEA  L   M  QGV PN+ T+N +++ L +  ++D+A  L   
Sbjct: 370 VTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSN 429

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M  +GV P A  Y  L+D    +G   +A E F  M++ G   ++ +    +    +   
Sbjct: 430 MESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGR 489

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           +  A ++++E+ S G+ P  VTYN
Sbjct: 490 LGEAKAMFNELKSSGLAPDSVTYN 513



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 146/297 (49%), Gaps = 6/297 (2%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P   ++N L     K+   + +  L+  + + G  P+  TYN++I+   K  R+     +
Sbjct: 823  PDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDL 882

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               ++   F+P   TF  LI GL    R+ +A  +F  +  +GC+P+   Y  L+NG  +
Sbjct: 883  YYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGK 942

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             GH   A   F+ M           +PD  +Y+ + D LC  G VD A   F K+K   +
Sbjct: 943  LGHVDTACEFFKRMVKEG------IRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGL 996

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            +PD+V Y  +I G   +    EA  LF EM ++G+ P++ T+N ++  L   G ++EA +
Sbjct: 997  DPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGK 1056

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
            + E +  IG++P+   YN L+ G+ L+G    A  ++  M   GC  +  ++  L N
Sbjct: 1057 IYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQLPN 1113



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 166/368 (45%), Gaps = 44/368 (11%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   +FN L  CL KN   D  L +F ++ ++   PD+ T+N +I+ F K  ++  
Sbjct: 608 HGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKN 667

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA------------------------ 106
             + L   ++    PD VT  +L+ G+    +I +A                        
Sbjct: 668 A-IWLFHQMKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVM 726

Query: 107 -----AALFTKLRAFG--------CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
                 A   K   FG        CK D      +I  LC+   T VA N+F +      
Sbjct: 727 GGILTEAGTEKAILFGERLVCRAICKDDS-VLIPIIKVLCKHKKTSVARNVFVKFTK--- 782

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           E GV  KP    Y+ + DG  +   V+ A  LF +MK     PD  TY SLI     +  
Sbjct: 783 ELGV--KPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGK 840

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            NE   L+ EM+ +G +PN +T+N++++ L K+ ++D+A  L   ++     P    +  
Sbjct: 841 INELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGP 900

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+DG   +GR++ A E+F  M   GC  +   Y IL+NGY K   ++ A   +  M+ +G
Sbjct: 901 LIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEG 960

Query: 334 IRPTVVTY 341
           IRP + +Y
Sbjct: 961 IRPDLKSY 968



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 157/318 (49%), Gaps = 7/318 (2%)

Query: 27   LAKNKHYDTVLSLF-KRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP 85
            L K+K      ++F K    +G+ P L  YN+LI+ F ++  V   + +   +  +   P
Sbjct: 764  LCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAP 823

Query: 86   DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
            D  T+ SLI       +I E   L+ ++   GCKP+  TY  +I+ L ++     A++L+
Sbjct: 824  DTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLY 883

Query: 146  EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
              + +G+        P   T+  + DGL K G +D A E+F  M      P+   Y  L+
Sbjct: 884  YNLVSGD------FSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILV 937

Query: 206  RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
             G+      + A   F  M+ +G++P++ ++ ++++ LC  G++D+A    E + Q G+ 
Sbjct: 938  NGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLD 997

Query: 266  PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
            PD   YN +++G   + R   A  LF  M++ G + D+++Y  LI        IE A  +
Sbjct: 998  PDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKI 1057

Query: 326  YSEMLSKGIRPTVVTYNT 343
            Y E+   G++P V TYN 
Sbjct: 1058 YEELQFIGLKPNVFTYNA 1075



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 7/230 (3%)

Query: 13   SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
            SP P C+F  L   L K+   D    +F  +   G  P+   YNIL+N + K+G V    
Sbjct: 892  SPTP-CTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTAC 950

Query: 73   VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
                R+++    PD  ++T L+  LC   R+ +A   F KL+  G  PD+  Y  +INGL
Sbjct: 951  EFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGL 1010

Query: 133  CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
             R+  T  AL+LF EM N     G+V  PD  TY+++   L   G +++A +++ +++  
Sbjct: 1011 GRSQRTEEALSLFHEMQNR----GIV--PDLYTYNSLILNLGIVGMIEEAGKIYEELQFI 1064

Query: 193  NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             + P+V TY +LIRG+  + +   A  ++ +MM  G  PN  TF  + N+
Sbjct: 1065 GLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQLPNQ 1114



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 143/314 (45%), Gaps = 11/314 (3%)

Query: 34  DTVLSLFKRLNSIGLFPDLY----TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89
           D + +LF    S+G  P++     T N ++       RV     V   + R     +  T
Sbjct: 103 DPIHALF-YFKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDT 161

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           +  + K L     + +A +   K+R  G   + ++Y  LI+ L ++G    AL ++  M 
Sbjct: 162 YLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMV 221

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           +         KP   T+S +     K   +     L  +M+   + P++ TYT  IR   
Sbjct: 222 SEG------LKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLG 275

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                +EA  +   M D G  P+VVT+ V+++ LC   K+D+A  L   M     +PD  
Sbjct: 276 RDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKV 335

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y TL+D F   G +++ ++++  ME++G   DV ++ IL+N  CK   I  A  L   M
Sbjct: 336 TYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTM 395

Query: 330 LSKGIRPTVVTYNT 343
             +G+ P + TYNT
Sbjct: 396 RKQGVLPNLHTYNT 409


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 168/319 (52%), Gaps = 8/319 (2%)

Query: 25  GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT 84
            CL K    +     F+     G+  D   Y+I+I   CK    + G  +L  +    + 
Sbjct: 269 ACL-KEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWV 327

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
           P   TFTS+I    A+  ++EA  L  ++   G   ++   T+L+ G C  G+   ALNL
Sbjct: 328 PSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNL 387

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
           F ++   +G F     P+ +TYS + +G C  G ++KA EL+ +MK   I P V    SL
Sbjct: 388 FNKITE-DGLF-----PNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSL 441

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           +RG+  A  W EA  LF E +D GV  N+ T+N++M+ LCK GKMDEA  LL+ M+  G+
Sbjct: 442 LRGYLKAPLWEEASKLFDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGM 500

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            P+   YN ++ G C  G ++ A  +F  M +     +V +Y ILI+G  K  + E AL 
Sbjct: 501 VPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALD 560

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           L+ +MLS  I PT  T+NT
Sbjct: 561 LFDQMLSLNIAPTDFTFNT 579



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 173/328 (52%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++IL     K    +  L LF ++ S+ + P  +T+N +IN  CK+G++S     
Sbjct: 537 PNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDK 596

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   L   F P  +T+ S++ G   E  I  A A++ ++  FG  P+V TYT+LING C+
Sbjct: 597 LKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCK 656

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +    +AL   +EM     E       D   YS + DG CK   ++ A++LF ++ +  +
Sbjct: 657 SNRIDLALKTRDEMREKGLEL------DVTAYSALIDGFCKRRDMESAQDLFFELLEVGL 710

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ + Y S+I GF   N+   A   + +M++  +  ++ T+  +++ L K G++  AS 
Sbjct: 711 SPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASD 770

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+  G+ PD   ++ L++G C  G++  A+++   M+       V  Y  LI GY 
Sbjct: 771 LYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYF 830

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +   ++ A +L+ EML +G+ P  VTY+
Sbjct: 831 REGNLKEAFTLHDEMLDRGLVPDDVTYD 858



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 179/362 (49%), Gaps = 41/362 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++NI+   L K    D   SL   + + G+ P++ +YN +I   C+ G +     V  
Sbjct: 469 IFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFS 528

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L     P+ VT++ LI G   +    +A  LF ++ +    P  FT+ T+INGLC+ G
Sbjct: 529 DMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVG 588

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A +  +       E G +  P  +TY++I DG  KEG +D A  ++ +M +  ++P
Sbjct: 589 QMSEARDKLKNFL----EEGFI--PSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSP 642

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +VVTYTSLI GFC +N  + A     EM ++G++ +V  ++ +++  CK   M+ A  L 
Sbjct: 643 NVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLF 702

Query: 257 ELMIQIGVRPDASVYN-----------------------------------TLMDGFCLT 281
             ++++G+ P+  VYN                                   TL+DG    
Sbjct: 703 FELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKE 762

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           GR+  A +L++ M S G + D+ ++ +L+NG C   ++E A  +  EM  K + P+V+ Y
Sbjct: 763 GRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIY 822

Query: 342 NT 343
           NT
Sbjct: 823 NT 824



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 40/344 (11%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS---------------PGFVVLGRI 78
           D+ L+LF ++   GLFP+  TY++LI   C  G +                P    +  +
Sbjct: 382 DSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSL 441

Query: 79  LR-------------------SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           LR                    C   +  T+  ++  LC   ++ EA +L   +   G  
Sbjct: 442 LRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMV 501

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+V +Y  +I G CR G+  +A ++F +M           KP+ +TYS + DG  K+G  
Sbjct: 502 PNVVSYNDMILGHCRKGNMDMASSVFSDM------LARDLKPNVVTYSILIDGNFKKGDS 555

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +KA +LF +M   NI P   T+ ++I G C     +EA+      +++G  P+ +T+N I
Sbjct: 556 EKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSI 615

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++   K G +D A  +   M + GV P+   Y +L++GFC + R++ A +    M   G 
Sbjct: 616 VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGL 675

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             DV +Y  LI+G+CK +++E A  L+ E+L  G+ P  + YN+
Sbjct: 676 ELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNS 719



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 171/330 (51%), Gaps = 9/330 (2%)

Query: 15  PPVCSF-NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P   +F +++  C+A+    +  L L + + + G   +L     L+  +C  G +     
Sbjct: 328 PSEATFTSVIVACVAQGNMVEA-LRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALN 386

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  +I      P+ VT++ LI+G C    I +A+ L+T+++  G  P VF   +L+ G  
Sbjct: 387 LFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYL 446

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A  LF+E      + GV    +  TY+ +   LCK G +D+A  L   M ++ 
Sbjct: 447 KAPLWEEASKLFDEAV----DCGVA---NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQG 499

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+VV+Y  +I G C   + + A  +F +M+ + ++PNVVT++++++   K G  ++A 
Sbjct: 500 MVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKAL 559

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + M+ + + P    +NT+++G C  G+++ A++   +    G +    +Y  +++G+
Sbjct: 560 DLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGF 619

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K   I+ AL++Y EM   G+ P VVTY +
Sbjct: 620 IKEGNIDSALAVYREMCEFGVSPNVVTYTS 649



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 126/292 (43%), Gaps = 7/292 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D   +N L+N + +  R+         ++     P       L+  L   + I E   L+
Sbjct: 189 DHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLY 248

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            K+   G   D FT   ++    + G    A   F E      E GV  K DA  YS I 
Sbjct: 249 NKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETK----ERGV--KLDAGAYSIII 302

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
             +CK+   +   EL  +MK+    P   T+TS+I       +  EA  L  EM++ G  
Sbjct: 303 QAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKP 362

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            N+V    +M   C  G +D A  L   + + G+ P+   Y+ L++G C +G + +A EL
Sbjct: 363 MNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASEL 422

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +  M+ NG    VF+   L+ GY K    E A  L+ E +  G+   + TYN
Sbjct: 423 YTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGV-ANIFTYN 473



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 144/357 (40%), Gaps = 28/357 (7%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI-GLFPDLYTYNILINCFCKM-- 65
           ++H    P+   +++   L       + L  FKR  +  G    +  Y +L++   +   
Sbjct: 90  QIHQETTPLSQNHVIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPE 149

Query: 66  --------------GRVSPGFVVLGRILRSC-----FTPDAVTFTSLIKGLCAESRIMEA 106
                         G   P  VV    L +C     F  D   F  L+      +RI  A
Sbjct: 150 THGHARKLLNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENA 209

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
              F  +      P V     L+  L R        +L+ +M    G +G     D  T 
Sbjct: 210 IDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMV-LRGIYG-----DHFTV 263

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
             +     KEG V++A+E F + K+  +  D   Y+ +I+  C   + N    L  EM +
Sbjct: 264 HVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKE 323

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G  P+  TF  ++      G M EA RL E MI  G   +  V  +LM G+C  G ++ 
Sbjct: 324 RGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDS 383

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A  LF  +  +G   +  +Y +LI G C +  IE A  LY++M   GI P+V   N+
Sbjct: 384 ALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNS 440



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  + ++  L   L K         L+  + S G+ PD+ T+++L+N  C  G++     
Sbjct: 746 PCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARK 805

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           +L  + R   TP  + + +LI G   E  + EA  L  ++   G  PD  TY  LING
Sbjct: 806 ILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 863


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 172/330 (52%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN++   + K    D  + +F+ +      PD+YTY  L++  CK  R+     +
Sbjct: 167 PNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSL 226

Query: 75  LGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L  + +  CF P  VTF  LI GLC +  +   A L   +   GC P+  TY TLI+GLC
Sbjct: 227 LDEMQIDGCF-PSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLC 285

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A++L + M +        C P+ +TY TI +GL K+G       +   M++  
Sbjct: 286 LKGKLEKAISLLDRMVSSK------CVPNVVTYGTIINGLVKQGRALDGARVLALMEERG 339

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            + +   Y++LI G        EA  LF EM  +  + N + ++ +++ LC++GK DEA 
Sbjct: 340 YHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEAL 399

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L  M     +P+A  Y++LM GF   G  ++A E++  M  +   ++   Y +LI+G 
Sbjct: 400 EVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGL 459

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK+ +++ A+ ++++ML KG +P VV Y +
Sbjct: 460 CKDGKVKEAMMVWAQMLGKGCKPDVVAYGS 489



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 172/329 (52%), Gaps = 9/329 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P PV +FN+L   L K      V  L   +   G  P+  TYN LI+  C  G++     
Sbjct: 237 PSPV-TFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAIS 295

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R++ S   P+ VT+ ++I GL  + R ++ A +   +   G   + + Y+ LI+GL 
Sbjct: 296 LLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLF 355

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G +  A+ LF+EM          C+ + I YS + DGLC++G  D+A E+  +M +  
Sbjct: 356 KEGKSQEAMQLFKEMTVKE------CELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNR 409

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+  TY+SL++GF  A + ++A  ++ +M       N V ++V+++ LCK+GK+ EA 
Sbjct: 410 CKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAM 469

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--ESNGCMRDVFSYGILIN 311
            +   M+  G +PD   Y ++++G    G V  A +L+  M  +      DV +Y IL+N
Sbjct: 470 MVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLN 529

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             CK   I  A+ L + ML +G  P +VT
Sbjct: 530 ALCKQSSISRAIDLLNSMLDRGCDPDLVT 558



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 145/286 (50%), Gaps = 21/286 (7%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGR-------ILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           T+  LI+ +  +G       VL R       ++  CF    V F +  K    E    +A
Sbjct: 62  TFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVEKCFV---VIFKAYGKAHLPE----KA 114

Query: 107 AALFTKLR-AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
             LF ++   F CK  V ++ +++N + + G    AL  +  +    G  GV   P+ +T
Sbjct: 115 VGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVI---GAKGVNISPNVLT 171

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +   +CK G VD A ++F  M      PDV TY +L+ G C A+  +EA  L  EM 
Sbjct: 172 FNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQ 231

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G  P+ VTFNV++N LCK G +   ++L++ M   G  P+   YNTL+ G CL G++ 
Sbjct: 232 IDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLE 291

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKN-KEIEGA--LSLYSE 328
           +A  L   M S+ C+ +V +YG +ING  K  + ++GA  L+L  E
Sbjct: 292 KAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEE 337



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 126/268 (47%), Gaps = 18/268 (6%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           ++ +   L ++   D  L +   + +    P+ YTY+ L+  F + G       +   + 
Sbjct: 382 YSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMA 441

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           +  FT + V ++ LI GLC + ++ EA  ++ ++   GCKPDV  Y ++INGL   G   
Sbjct: 442 KHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVE 501

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL L+ EM     +     +PD +TY+ + + LCK+  + +A +L   M D   +PD+V
Sbjct: 502 DALQLYNEMLCQEPD----SQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLV 557

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T    +R      D  +    F++ +              +  L K  ++  AS+++E+M
Sbjct: 558 TCIIFLRTLREKLDPPQDGREFLDGL--------------VVRLLKRQRVLGASKIVEVM 603

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           +Q  + P  S +  +++  C   +V  A
Sbjct: 604 LQKLLPPKPSTWTRVVEDLCNPKKVQAA 631



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 8/206 (3%)

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF---LKMKDENINPD 197
           A+ LF+ MA     +   CK    +++++ + + +EG   +A E +   +  K  NI+P+
Sbjct: 114 AVGLFDRMA-----YEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPN 168

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V+T+  +I+  C     ++A  +F +M     QP+V T+  +M+ LCK  ++DEA  LL+
Sbjct: 169 VLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLD 228

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M   G  P    +N L++G C  G + R  +L  +M   GC  +  +Y  LI+G C   
Sbjct: 229 EMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKG 288

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++E A+SL   M+S    P VVTY T
Sbjct: 289 KLEKAISLLDRMVSSKCVPNVVTYGT 314


>gi|357499997|ref|XP_003620287.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357500057|ref|XP_003620317.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495302|gb|AES76505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495332|gb|AES76535.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 291

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 90/242 (37%), Positives = 142/242 (58%), Gaps = 6/242 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ +L      P +  F  + G L K  HY TV+SL +++   G   +L T +ILIN F 
Sbjct: 35  FNRLLHQQNPTPSIFQFGKILGSLVKINHYSTVVSLHQQMELNGFVSNLVTLSILINSFS 94

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           ++G+    F VL +I +  + PDA+T TSLIKGLC + +I +A     KL A G + +  
Sbjct: 95  QLGQNPLSFSVLAKIFKKGYDPDAITLTSLIKGLCLKGQIHQALHFHDKLAALGFRFNHV 154

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TLINGLC+ G T  AL L   +       G + +PD + Y+ I D +CK+  V++A 
Sbjct: 155 SYGTLINGLCKVGQTRAALQLLRRVD------GKLVQPDVVMYTMIIDSMCKDKLVNEAF 208

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ +M  + I+PDVVTY++LI GFC     N++  LF +M+ + + PN+ TFN++++  
Sbjct: 209 DLYSEMVSKGISPDVVTYSALISGFCILGKLNDSIGLFHKMISEKINPNMYTFNILIDAF 268

Query: 244 CK 245
            +
Sbjct: 269 VE 270



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 113/232 (48%), Gaps = 6/232 (2%)

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
           TP    F  ++  L   +      +L  ++   G   ++ T + LIN   + G   ++ +
Sbjct: 45  TPSIFQFGKILGSLVKINHYSTVVSLHQQMELNGFVSNLVTLSILINSFSQLGQNPLSFS 104

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           +  ++      F     PDAIT +++  GLC +G + +A     K+       + V+Y +
Sbjct: 105 VLAKI------FKKGYDPDAITLTSLIKGLCLKGQIHQALHFHDKLAALGFRFNHVSYGT 158

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           LI G C       A  L   +  + VQP+VV + +I++ +CK+  ++EA  L   M+  G
Sbjct: 159 LINGLCKVGQTRAALQLLRRVDGKLVQPDVVMYTMIIDSMCKDKLVNEAFDLYSEMVSKG 218

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           + PD   Y+ L+ GFC+ G++N +  LF  M S     +++++ ILI+ + +
Sbjct: 219 ISPDVVTYSALISGFCILGKLNDSIGLFHKMISEKINPNMYTFNILIDAFVE 270



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 8/224 (3%)

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGF 178
           P +F +  ++  L +  H    ++L ++M  NG          + +T S + +   + G 
Sbjct: 46  PSIFQFGKILGSLVKINHYSTVVSLHQQMELNG-------FVSNLVTLSILINSFSQLGQ 98

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
              +  +  K+  +  +PD +T TSLI+G C     ++A     ++   G + N V++  
Sbjct: 99  NPLSFSVLAKIFKKGYDPDAITLTSLIKGLCLKGQIHQALHFHDKLAALGFRFNHVSYGT 158

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++N LCK G+   A +LL  +    V+PD  +Y  ++D  C    VN A +L+  M S G
Sbjct: 159 LINGLCKVGQTRAALQLLRRVDGKLVQPDVVMYTMIIDSMCKDKLVNEAFDLYSEMVSKG 218

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
              DV +Y  LI+G+C   ++  ++ L+ +M+S+ I P + T+N
Sbjct: 219 ISPDVVTYSALISGFCILGKLNDSIGLFHKMISEKINPNMYTFN 262



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 35/190 (18%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           +  +N  P +  +  ++      N ++    L  +M   G   N+VT ++++N   + G+
Sbjct: 39  LHQQNPTPSIFQFGKILGSLVKINHYSTVVSLHQQMELNGFVSNLVTLSILINSFSQLGQ 98

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
              +  +L  + + G  PDA    +L+ G CL G++++A      + + G   +  SYG 
Sbjct: 99  NPLSFSVLAKIFKKGYDPDAITLTSLIKGLCLKGQIHQALHFHDKLAALGFRFNHVSYGT 158

Query: 309 LINGY-----------------------------------CKNKEIEGALSLYSEMLSKG 333
           LING                                    CK+K +  A  LYSEM+SKG
Sbjct: 159 LINGLCKVGQTRAALQLLRRVDGKLVQPDVVMYTMIIDSMCKDKLVNEAFDLYSEMVSKG 218

Query: 334 IRPTVVTYNT 343
           I P VVTY+ 
Sbjct: 219 ISPDVVTYSA 228


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 178/338 (52%), Gaps = 6/338 (1%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y+ R   + P + + N +   L K +       LF  +   G+ P + TYN LIN     
Sbjct: 132 YVFRRLWTLPALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQ 191

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G V+    +  +++     P+ +T+TS+I  LC E  I +A  LF  ++  G +P+ +TY
Sbjct: 192 GAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTY 251

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
             L++G C+      A  L++E+ N     G++  P+A+ ++T+ DG CK     +AK++
Sbjct: 252 NVLMSGHCQGDDVNSAFVLYQELLNS----GLI--PNAVVFTTLIDGFCKAKRFSEAKDM 305

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F  M    + P V  Y SL+ G   + D  EA  L+ EM   G+ P+  T ++++  LC 
Sbjct: 306 FRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCD 365

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G++  A+R LE + + GV  +A+ YN L+D +C  G +  A      M   G   +V S
Sbjct: 366 GGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVS 425

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y  LI+G+ K  +++ A+++Y+EM++KGI P VVTY  
Sbjct: 426 YSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTA 463



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 144/290 (49%), Gaps = 6/290 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +   G+ P+ YTYN+L++  C+   V+  FV+   +L S   P+AV FT+LI G C
Sbjct: 235 LFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFC 294

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
              R  EA  +F  +  FG  P V  Y +L++G  R+G    AL+L++EM       G+ 
Sbjct: 295 KAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMT----RLGLC 350

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
             PD  T S +  GLC  G +  A      ++++ +N +   Y +LI  +C   +  EA 
Sbjct: 351 --PDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEAL 408

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
                M + GV+PNVV+++ +++   K GKM  A  +   M+  G+ P+   Y  L+ G 
Sbjct: 409 ATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGH 468

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
              G ++ A      M  NG   +  +  +L++G C+   ++ A+    E
Sbjct: 469 AKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVME 518



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 140/322 (43%), Gaps = 44/322 (13%)

Query: 57  ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           +L+    +MG +     V  R+      P      +++ GL    R   A  LF ++   
Sbjct: 116 VLVIALSQMGLLDEALYVFRRLWT---LPALPACNAVLDGLVKARRSRCAWELFDEMLRR 172

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G  P V TY TLIN     G    A  ++++M            P+ ITY+++   LC+E
Sbjct: 173 GMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQ------IDPNVITYTSMICVLCEE 226

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +  A+ LF  MK+  + P+  TY  L+ G C  +D N A  L+ E+++ G+ PN V F
Sbjct: 227 GCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVF 286

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++  CK  +  EA  +   M + GV P   VYN+LMDG   +G    A  L+  M  
Sbjct: 287 TTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTR 346

Query: 297 NGCMRDVF-----------------------------------SYGILINGYCKNKEIEG 321
            G   D F                                   +Y  LI+ YC+N  +E 
Sbjct: 347 LGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEE 406

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           AL+  + M   G+ P VV+Y++
Sbjct: 407 ALATCTRMTEVGVEPNVVSYSS 428


>gi|413936859|gb|AFW71410.1| hypothetical protein ZEAMMB73_528560 [Zea mays]
          Length = 671

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 169/328 (51%), Gaps = 15/328 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +F+ L   L +N+  +  + + +++   G  PD+ +YN +I+CF    R      
Sbjct: 350 PPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALK 409

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +L     PD ++F +++K LC   R  +A  L  K+    C+ +  T+  LI+ LC
Sbjct: 410 LLKSML---CKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLC 466

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ +FE M          C PD +TYS++ +G  ++G  + A +LF  M    
Sbjct: 467 QNGQVKDAIEVFELMPKYR------CMPDIVTYSSLINGFSEQGLDEMAFDLFRSMP--- 517

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              D+ +Y + ++G C A  W++A  L  +M+ +   PN VTFN++++ LC+ G ++ A 
Sbjct: 518 CRADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAI 577

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + E M + G+ PD   YN L++G+   GR++ A +   +M    C  D  SY  ++ G 
Sbjct: 578 DVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLSTMP---CEPDTISYNSILKGL 634

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           C+ +  + A  L +EML K   P  VT+
Sbjct: 635 CRAERWKDAEKLVTEMLRKNCTPNEVTF 662



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 168/361 (46%), Gaps = 44/361 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F        +N   D  + L +++   G  PD+  Y+ L+N F + GRV     +
Sbjct: 249 PNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKL 308

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L     P+ V + + +KGLC   R  E   L  ++    C P+  T++TLIN LC+
Sbjct: 309 LNTML---CRPNTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQ 365

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A+ + E+M     ++G +  PD ++Y+TI      +   D A +L   M     
Sbjct: 366 NRLVEYAVEVLEQMQ----KYGYM--PDVVSYNTIISCFSDQARADDALKLLKSML---C 416

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +++ ++++  C A  W +A  L  +M+ +  + N +TFN++++ LC+NG++ +A  
Sbjct: 417 KPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIE 476

Query: 255 LLELMIQIGVRPDASVYNTLMDGF--------------------------------CLTG 282
           + ELM +    PD   Y++L++GF                                C+  
Sbjct: 477 VFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMPCRADIFSYNATLKGLCMAA 536

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           R + A EL   M +  C+ +  ++ ILI+  C+   +  A+ +Y +M   GI P + TYN
Sbjct: 537 RWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQMPKYGITPDIFTYN 596

Query: 343 T 343
            
Sbjct: 597 A 597



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 160/363 (44%), Gaps = 46/363 (12%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P PP V S NIL   L   +       + + L + G   D  ++N L+  +C+ G +   
Sbjct: 111 PEPPAVISCNILIKKLCARRRLADAERVLEALKASGA-ADAVSHNTLVAGYCRDGSLGDA 169

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             V+    R+  T + VT+T+LI G C   R+ +A  L   +      PD +TY T++ G
Sbjct: 170 ERVV-EAARASGTANVVTYTALIDGYCRSGRLADALRLIASMPV---APDTYTYNTVLKG 225

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LC       A  L  EM   +      C P+ +T++T     C+ G +D+A EL  +M  
Sbjct: 226 LCCAKQWEQAEELMREMIRNS------CHPNEVTFATQIRAFCQNGLLDRAVELLEQMPK 279

Query: 192 ENINPDVVTYTSLIRGF--------------------------------CYANDWNEAKC 219
               PDV+ Y++L+ GF                                C A  W E   
Sbjct: 280 YGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYNAALKGLCIAGRWEEVGE 339

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  EM+ +   PN  TF+ ++N LC+N  ++ A  +LE M + G  PD   YNT++  F 
Sbjct: 340 LIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFS 399

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
              R + A +L  SM    C  D  S+  ++   CK K    A+ L ++ML K  R   +
Sbjct: 400 DQARADDALKLLKSML---CKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEM 456

Query: 340 TYN 342
           T+N
Sbjct: 457 TFN 459



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 161/361 (44%), Gaps = 61/361 (16%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
            + + S+ + PD YTYN ++   C   +      ++  ++R+   P+ VTF + I+  C 
Sbjct: 204 LRLIASMPVAPDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQ 263

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM----------- 148
              +  A  L  ++  +GC PDV  Y+TL+NG    G    AL L   M           
Sbjct: 264 NGLLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYNA 323

Query: 149 -------ANGNGEFGVV--------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                  A    E G +        C P+  T+ST+ + LC+   V+ A E+  +M+   
Sbjct: 324 ALKGLCIAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYG 383

Query: 194 INPDVVTYTSLIRGF--------------------------------CYANDWNEAKCLF 221
             PDVV+Y ++I  F                                C A  W +A  L 
Sbjct: 384 YMPDVVSYNTIISCFSDQARADDALKLLKSMLCKPDTISFNAVLKCLCKAKRWYDAVELV 443

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +M+ +  + N +TFN++++ LC+NG++ +A  + ELM +    PD   Y++L++GF   
Sbjct: 444 AKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQ 503

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G    A +LF SM    C  D+FSY   + G C     + A  L ++M+++   P  VT+
Sbjct: 504 GLDEMAFDLFRSMP---CRADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTF 560

Query: 342 N 342
           N
Sbjct: 561 N 561



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 132/291 (45%), Gaps = 43/291 (14%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
           P  ++   LIK LCA  R+ +A  +   L+A G   D  ++ TL+ G CR G    A  +
Sbjct: 114 PAVISCNILIKKLCARRRLADAERVLEALKASGAA-DAVSHNTLVAGYCRDGSLGDAERV 172

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
            E  A  +G   VV      TY+ + DG C+ G +  A  L   M    + PD  TY ++
Sbjct: 173 VE-AARASGTANVV------TYTALIDGYCRSGRLADALRLIASMP---VAPDTYTYNTV 222

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           ++G C A  W +A+ L  EM+     PN VTF   +   C+NG +D A  LLE M + G 
Sbjct: 223 LKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGC 282

Query: 265 RPDASVYNTLMDGF--------------------------------CLTGRVNRAKELFV 292
            PD  +Y+TL++GF                                C+ GR     EL  
Sbjct: 283 TPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYNAALKGLCIAGRWEEVGELIA 342

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M    C  +  ++  LIN  C+N+ +E A+ +  +M   G  P VV+YNT
Sbjct: 343 EMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNT 393



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 10/163 (6%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD + R  P    + S+N     L     +D    L   + +    P+  T+NILI+  C
Sbjct: 510 FD-LFRSMPCRADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLC 568

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           + G V+    V  ++ +   TPD  T+ +LI G   + R+ +A    + +    C+PD  
Sbjct: 569 QKGLVNRAIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLSTM---PCEPDTI 625

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
           +Y +++ GLCR      A  L  EM   N      C P+ +T+
Sbjct: 626 SYNSILKGLCRAERWKDAEKLVTEMLRKN------CTPNEVTF 662


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 176/361 (48%), Gaps = 43/361 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +F +L   L +   +  V+ LF  L S G+     TY ++++  C  G  +    ++ R 
Sbjct: 21  AFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELV-RE 79

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L   +TP    +  +I GLC  SR+M+A  +  K+      P+VFTYT L+NGLCR+  T
Sbjct: 80  LSGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKT 139

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
            +A  +F+EM   NG     CKP+ ITY T+   L + G +D+A  + ++ +   +  DV
Sbjct: 140 KLAREVFQEMKR-NG-----CKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDV 193

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI------------------- 239
           +T T+++ G C A+  ++A     EM   GV+PN VT++ +                   
Sbjct: 194 ITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEE 253

Query: 240 -----------------MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
                            ++ LCK G +D A + +E + Q GV PD   Y+ L++ F   G
Sbjct: 254 EKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAG 313

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + + + EL   M  NG   DV +Y  LIN  CK ++ + A  L   M + G  P VVTYN
Sbjct: 314 QFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYN 373

Query: 343 T 343
           +
Sbjct: 374 S 374



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 167/329 (50%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL   L ++        +F+ +   G  P+  TY  LI    + G +     V
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180

Query: 75  LGRILRSCFTP-DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +    RS   P D +T T+++ GLC  SR+ +A     ++R  G +P+  TY+ L++G  
Sbjct: 181 MIE-QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFR 239

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G     +  FEE     G        +A  Y    D LCK G++D+A++   +++   
Sbjct: 240 QHGELDRVIRFFEEEKARKG-----GSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSG 294

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PDVVTY+ LI  F  A  ++ +  L  +M   GV+P+VVT++ ++N LCK  K  +A 
Sbjct: 295 VVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAF 354

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RLLELM   G  P+   YN++MDG C +G+++    ++  M  + C  DV +Y I++NG 
Sbjct: 355 RLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGL 414

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            K   ++ A+ L+  + S    P    Y+
Sbjct: 415 SKAGMLDSAVKLFELIKSSREGPDAAAYS 443



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 151/333 (45%), Gaps = 22/333 (6%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  V +   + G L K    D  L   + +  +G+ P+  TY+ L++ F + G       
Sbjct: 190 PTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGE------ 243

Query: 74  VLGRILR--------SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
            L R++R           + +A  +   +  LC    +  A     +LR  G  PDV TY
Sbjct: 244 -LDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTY 302

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           + LIN   R G    +L L E+M   NG      KPD +TYST+ + LCKE     A  L
Sbjct: 303 SMLINTFARAGQFDASLELLEDMRR-NG-----VKPDVVTYSTLINVLCKERKFQDAFRL 356

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
              M+     P+VVTY S++ G C +   +E   ++  M+     P+VVT+++IMN L K
Sbjct: 357 LELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSK 416

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV-F 304
            G +D A +L EL+      PDA+ Y+ ++   C  G++  A  ++  ME      ++  
Sbjct: 417 AGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVAGDNICR 476

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
           +   L+   C  K  + A  +      +G R T
Sbjct: 477 ALAGLVAALCDAKRTDSARRIVEVARERGHRVT 509



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 141/329 (42%), Gaps = 78/329 (23%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D+  FT L   L   S+  E   LFT L + G      TY  +++GLC  G    AL L 
Sbjct: 18  DSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELV 77

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
            E++        V  P    Y+ I  GLC+   V  A ++  KM +E+I P+V TYT L+
Sbjct: 78  RELSG-------VYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILL 130

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL---------- 255
            G C +N    A+ +F EM   G +PN +T+  ++  L + G++DEA R+          
Sbjct: 131 NGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELP 190

Query: 256 -------------------------LELMIQIGVRPDASVYNTLMDGF------------ 278
                                    +E M Q+GVRP+   Y+ L+ GF            
Sbjct: 191 TDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRF 250

Query: 279 ------------------------CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
                                   C  G ++RA++    +  +G + DV +Y +LIN + 
Sbjct: 251 FEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFA 310

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  + + +L L  +M   G++P VVTY+T
Sbjct: 311 RAGQFDASLELLEDMRRNGVKPDVVTYST 339



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 7/239 (2%)

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
           M A  L   +   G K D   +T L   L R       + LF  +A+    +G       
Sbjct: 1   MAAKLLERSVVEAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYG------E 54

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
            TY  + DGLC  G  ++A EL  ++      P V  Y  +I G C A+   +A  +  +
Sbjct: 55  TTYKLVVDGLCGAGMANQALELVRELSG-VYTPTVFIYNGIITGLCRASRVMDAYKVLEK 113

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+++ + PNV T+ +++N LC++ K   A  + + M + G +P+   Y TL+      G 
Sbjct: 114 MVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGE 173

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++ A  + +   S     DV +   ++ G CK   ++ AL    EM   G+RP  VTY+
Sbjct: 174 IDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYS 232



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR     P V ++++L    A+   +D  L L + +   G+ PD+ TY+ LIN  CK  +
Sbjct: 290 LRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERK 349

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
               F +L  +  +   P+ VT+ S++ GLC   ++ E   ++  +    C PDV TY+ 
Sbjct: 350 FQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSI 409

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           ++NGL + G    A+ LFE + +          PDA  YS +   LC+ G +++A
Sbjct: 410 IMNGLSKAGMLDSAVKLFELIKSSRE------GPDAAAYSMVITSLCRAGKLEEA 458


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 167/323 (51%), Gaps = 9/323 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F  L   L K         L   +++ GL P++ TY  +I+ +CK G+V     VL  + 
Sbjct: 430 FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 489

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R    P+A T+ SL+ GL  + ++ +A AL TK++  G  P+V TYTTL+ G C      
Sbjct: 490 RDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFD 549

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  LFE M   NG      KPD   Y+ +TD LCK G  ++A    ++   + +    V
Sbjct: 550 NAFRLFE-MMEQNG-----LKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGVALTKV 600

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            YT+LI GF  A + + A  L   M+D+G  P+  T++V+++ LCK  +++EA  +L+ M
Sbjct: 601 YYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM 660

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              G++     Y  L+D     G+ + AK ++  M S+G      +Y + IN YCK   +
Sbjct: 661 SLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRL 720

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
           E A  L  +M  +G+ P VVTYN
Sbjct: 721 EDAEDLILKMEREGVAPDVVTYN 743



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 161/305 (52%), Gaps = 7/305 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +  +G   + Y+Y ILI   C    V    V+   + R   +P+   FT LI GLC
Sbjct: 240 LFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLC 299

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
              R+ +A  LF  +   G  P V TY  +I G  + G    AL + +E+   NG     
Sbjct: 300 KSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKI-KELMEKNG----- 353

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C PD  TY+T+  GLC +   ++A+EL      E   P VVT+T+LI G+C A  +++A 
Sbjct: 354 CHPDDWTYNTLIYGLCDQK-TEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDAL 412

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            +  +MM    + ++  F  ++N L K  ++ EA  LL  +   G+ P+   Y +++DG+
Sbjct: 413 RMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGY 472

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C +G+V+ A E+   ME +GC  + ++Y  L+ G  K+K++  A++L ++M   GI P V
Sbjct: 473 CKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNV 532

Query: 339 VTYNT 343
           +TY T
Sbjct: 533 ITYTT 537



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 163/362 (45%), Gaps = 41/362 (11%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           P C +N     LA+    + +  ++ +L   GL PD  TYN +I  +CK G ++      
Sbjct: 148 PKC-YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYF 206

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             +L     P+  T  +L+ G C    + +A  LF  +   GC+ + ++YT LI GLC  
Sbjct: 207 RLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDA 266

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                AL LF  M          C P+   ++ +  GLCK G V  A+ LF  M    + 
Sbjct: 267 KCVRKALVLFLMMKRDG------CSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVV 320

Query: 196 PDVVTYTSLIRGF--------------------CYANDW--------------NEAKCLF 221
           P V+TY ++I G+                    C+ +DW               EA+ L 
Sbjct: 321 PSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELL 380

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
              + +G  P VVTF  ++N  C   K D+A R+   M+    + D  V+  L++     
Sbjct: 381 NNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 440

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            R+  AKEL   + +NG + +V +Y  +I+GYCK+ +++ AL +   M   G +P   TY
Sbjct: 441 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTY 500

Query: 342 NT 343
           N+
Sbjct: 501 NS 502



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 161/337 (47%), Gaps = 10/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M++     P V +F  L   L K+        LF  +   G+ P + TYN +I  + K+G
Sbjct: 278 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 337

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R++    +   + ++   PD  T+ +LI GLC + +  EA  L       G  P V T+T
Sbjct: 338 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFT 396

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LING C       AL +  +M +        CK D   +  + + L K+  + +AKEL 
Sbjct: 397 NLINGYCMAEKFDDALRMKNKMMSSK------CKLDLQVFGKLINSLIKKDRLKEAKELL 450

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            ++    + P+V+TYTS+I G+C +   + A  +   M   G QPN  T+N +M  L K+
Sbjct: 451 NEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKD 510

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            K+ +A  LL  M + G+ P+   Y TL+ G C     + A  LF  ME NG   D  +Y
Sbjct: 511 KKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAY 570

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L +  CK    E A   YS ++ KG+  T V Y T
Sbjct: 571 AVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTT 604



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 162/375 (43%), Gaps = 54/375 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF-- 72
           P V ++  L         +D    LF+ +   GL PD + Y +L +  CK GR    +  
Sbjct: 530 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 589

Query: 73  ------------------------------VVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
                                          ++ R++    TPD+ T++ L+  LC + R
Sbjct: 590 IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 649

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + EA  +  ++   G K  +F YT LI+ + R G    A  ++ EM +         KP 
Sbjct: 650 LNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH------KPS 703

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
           A TY+   +  CKEG ++ A++L LKM+ E + PDVVTY  LI G  +    + A     
Sbjct: 704 ATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLK 763

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNG----------------KMDEASRLLELMIQIGVRP 266
            M+    +PN  T+ +++  L K                  ++D   +LLE M++ G+ P
Sbjct: 764 RMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNP 823

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
             + Y++L+ GFC  GR+  A  L   M   G   +   Y +LI   C  K  E ALS  
Sbjct: 824 TVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFV 883

Query: 327 SEMLSKGIRPTVVTY 341
           S M   G +P + +Y
Sbjct: 884 SIMSECGFQPQLESY 898



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 136/317 (42%), Gaps = 22/317 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++++L   L K K  +  L +  +++  G+   ++ Y ILI+   + G+      +
Sbjct: 632 PDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRM 691

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S   P A T+T  I   C E R+ +A  L  K+   G  PDV TY  LI+G   
Sbjct: 692 YNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGH 751

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITY----------------STITDGLCKEGF 178
            G+   A +  + M       G  C+P+  TY                S  T G+     
Sbjct: 752 MGYIDRAFSTLKRMV------GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIE 805

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D   +L  +M    +NP V TY+SLI GFC A    EA  L   M  +G+ PN   + +
Sbjct: 806 LDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTL 865

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++   C     ++A   + +M + G +P    Y  L+ G C  G   + K LF  +   G
Sbjct: 866 LIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 925

Query: 299 CMRDVFSYGILINGYCK 315
              D  ++ IL +G  K
Sbjct: 926 YNHDEVAWKILNDGLLK 942



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 139/317 (43%), Gaps = 17/317 (5%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++ IL   + +   +D    ++  + S G  P   TY + IN +CK GR+     ++ ++
Sbjct: 671 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKM 730

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG-- 136
            R    PD VT+  LI G      I  A +   ++    C+P+ +TY  L+  L +    
Sbjct: 731 EREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLA 790

Query: 137 ----------HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
                       ++ L++  ++     + G+   P   TYS++  G CK G +++A  L 
Sbjct: 791 YVRSVDTSGMWNLIELDITWQLLERMVKHGL--NPTVTTYSSLIAGFCKAGRLEEACLLL 848

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M  + ++P+   YT LI+  C    + +A      M + G QP + ++ +++  LC  
Sbjct: 849 DHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNE 908

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G  ++   L   ++++G   D   +  L DG    G V+   ++   ME   C     +Y
Sbjct: 909 GDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTY 968

Query: 307 GILINGYCKNKEIEGAL 323
            ++ N   K  E+  +L
Sbjct: 969 ALVTN---KMHEVSSSL 982


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 188/401 (46%), Gaps = 79/401 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +   N +   L K K  D   S+ +++   G+ PDL+TY+++I+  CK   +     V
Sbjct: 223 PKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERV 282

Query: 75  LGRILRSCFTPDAVTFTSLIKG-----------------------------------LCA 99
           L +++ +   P+++T+ SLI G                                   L  
Sbjct: 283 LEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFK 342

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTT-------------------------------- 127
             R  EA  +F  +   G KPD+ +Y+T                                
Sbjct: 343 HGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNK 402

Query: 128 -----LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
                LIN   R G    A+ +FE+M N     G++  PD +T++T+   LC+ G +D A
Sbjct: 403 HVFNILINAYARCGMMDKAMLIFEDMQNK----GMI--PDTVTFATVISSLCRIGRLDDA 456

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-QPNVVTFNVIMN 241
              F  M D  + P    Y  LI+G C   +  +AK L  EMM++ +  P V  F+ I+N
Sbjct: 457 LHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIIN 516

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G++ E   ++++M+Q G RP+   +N+LM+G+CL G +  A  L  +M S G   
Sbjct: 517 NLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEP 576

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + + YG L++GYCKN  I+ AL+++ +ML KG++PT V Y+
Sbjct: 577 NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYS 617



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 169/342 (49%), Gaps = 6/342 (1%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           CIFD M+   P P  +    +L G   A +     V ++F  + + G+ P+ + +NILIN
Sbjct: 351 CIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILIN 410

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            + + G +    ++   +      PD VTF ++I  LC   R+ +A   F  +   G  P
Sbjct: 411 AYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPP 470

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               Y  LI G C  G  + A  L  EM N +     +  P    +S+I + LCKEG V 
Sbjct: 471 SEAVYGCLIQGCCNHGELVKAKELISEMMNKD-----IPPPGVKYFSSIINNLCKEGRVA 525

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           + K++   M      P+VVT+ SL+ G+C   +  EA  L   M   G++PN   +  ++
Sbjct: 526 EGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLV 585

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CKNG++D+A  +   M+  GV+P + +Y+ ++ G     R   AK++F  M  +G  
Sbjct: 586 DGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTT 645

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             + +YG+++ G C+N   + A  L  ++ +  ++  ++T+N
Sbjct: 646 VSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 687



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 174/348 (50%), Gaps = 28/348 (8%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDT-------VLSLFKRLNSIG----LFPDLYTYNILINC 61
           +P P  + N +   LA+              + LFKR++         P ++TYNILI+C
Sbjct: 106 APVPARALNGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDC 165

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           + ++ R   G  ++GR+L++   PD  ++ SLI G   +  + +A  LF ++   G  P 
Sbjct: 166 YRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPK 224

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           +    ++I  LC+      A ++ ++M +          PD  TYS I DGLCK   +DK
Sbjct: 225 ILICNSIIKELCKMKEMDKAESIVQKMVDSG------IAPDLFTYSLIIDGLCKSKAMDK 278

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+ +  +M +    P+ +TY SLI G+  +  WNE+  +F +M   GV P V   N  ++
Sbjct: 279 AERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIH 338

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF------CLTGRVNRAKELFVSME 295
            L K+G+ +EA  + + M+  G +PD   Y+T++ G+      CL    N    +F  M 
Sbjct: 339 ALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHN----IFNLML 394

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + G   +   + ILIN Y +   ++ A+ ++ +M +KG+ P  VT+ T
Sbjct: 395 TKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 442



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 169/366 (46%), Gaps = 44/366 (12%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SPP + ++NIL  C  +    D  L++  RL   GL PD ++Y+ LI  F K G V    
Sbjct: 152 SPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAH 210

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   ++     P  +   S+IK LC    + +A ++  K+   G  PD+FTY+ +I+GL
Sbjct: 211 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 270

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG-------------------- 172
           C++     A  + E+M           +P++ITY+++  G                    
Sbjct: 271 CKSKAMDKAERVLEQMVEAG------TRPNSITYNSLIHGYSISGMWNESVRVFKQMSSC 324

Query: 173 ---------------LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND--WN 215
                          L K G  ++AK +F  M  +   PD+++Y++++ G+  A D    
Sbjct: 325 GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLA 384

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           +   +F  M+ +G+ PN   FN+++N   + G MD+A  + E M   G+ PD   + T++
Sbjct: 385 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 444

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
              C  GR++ A   F  M   G       YG LI G C + E+  A  L SEM++K I 
Sbjct: 445 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIP 504

Query: 336 PTVVTY 341
           P  V Y
Sbjct: 505 PPGVKY 510



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 169/367 (46%), Gaps = 43/367 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ ML    +P     FNIL    A+    D  + +F+ + + G+ PD  T+  +I+  
Sbjct: 389 IFNLMLTKGIAPNKHV-FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 447

Query: 63  CKMGR---------------VSPGFVVLGRILRSC--------------------FTPDA 87
           C++GR               V P   V G +++ C                      P  
Sbjct: 448 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 507

Query: 88  VT-FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
           V  F+S+I  LC E R+ E   +   +   G +P+V T+ +L+ G C  G+   A  L +
Sbjct: 508 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 567

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
            MA+      +  +P+   Y T+ DG CK G +D A  +F  M  + + P  V Y+ ++ 
Sbjct: 568 AMAS------IGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH 621

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G   A     AK +F EM++ G   ++ T+ V++  LC+N   DEA+ LLE +  + V+ 
Sbjct: 622 GLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 681

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   +N ++      GR   AKELF ++ + G + ++ +Y ++I    K +  E A +L+
Sbjct: 682 DIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLF 741

Query: 327 SEMLSKG 333
             +   G
Sbjct: 742 ISVEKSG 748



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 6/253 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P +  ++ +IN  CK GRV+ G  ++  ++++   P+ VTF SL++G C    + EA AL
Sbjct: 506 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 565

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
              + + G +P+ + Y TL++G C+ G    AL +F +M +     GV  KP ++ YS I
Sbjct: 566 LDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHK----GV--KPTSVLYSII 619

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GL +      AK++F +M +      + TY  ++ G C  N  +EA  L  ++    V
Sbjct: 620 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNV 679

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           + +++TFN++++ + K G+  EA  L + +   G+ P+   Y+ ++           A  
Sbjct: 680 KFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADN 739

Query: 290 LFVSMESNGCMRD 302
           LF+S+E +G   D
Sbjct: 740 LFISVEKSGHASD 752



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 130/308 (42%), Gaps = 6/308 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V  F+ +   L K         +   +   G  P++ T+N L+  +C +G +   F 
Sbjct: 505 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 564

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      P+   + +L+ G C   RI +A  +F  +   G KP    Y+ +++GL 
Sbjct: 565 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLF 624

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +   T  A  +F EM        +       TY  +  GLC+    D+A  L  K+   N
Sbjct: 625 QARRTTAAKKMFHEMIESGTTVSIH------TYGVVLGGLCRNNCTDEANMLLEKLFAMN 678

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  D++T+  +I          EAK LF  +   G+ PN+ T+++++  L K    +EA 
Sbjct: 679 VKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEAD 738

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   + + G   D+ + N ++        V +A      +  N    +  +  +L + +
Sbjct: 739 NLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLF 798

Query: 314 CKNKEIEG 321
            +   I+G
Sbjct: 799 SREGMIKG 806


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 167/323 (51%), Gaps = 9/323 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F  L   L K         L   +++ GL P++ TY  +I+ +CK G+V     VL  + 
Sbjct: 430 FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 489

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R    P+A T+ SL+ GL  + ++ +A AL TK++  G  P+V TYTTL+ G C      
Sbjct: 490 RDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFD 549

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  LFE M   NG      KPD   Y+ +TD LCK G  ++A    ++   + +    V
Sbjct: 550 NAFRLFE-MMEQNG-----LKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGVALTKV 600

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            YT+LI GF  A + + A  L   M+D+G  P+  T++V+++ LCK  +++EA  +L+ M
Sbjct: 601 YYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM 660

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              G++     Y  L+D     G+ + AK ++  M S+G      +Y + IN YCK   +
Sbjct: 661 SLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRL 720

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
           E A  L  +M  +G+ P VVTYN
Sbjct: 721 EDAEDLILKMEREGVAPDVVTYN 743



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 187/379 (49%), Gaps = 38/379 (10%)

Query: 1   FCIFDYMLRMHPSP------PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYT 54
           F + +YM R++         P   ++N +     K     T    F+ L   GL P+ +T
Sbjct: 161 FDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFT 220

Query: 55  YNILINCFCKMGRVSPG-FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
            N L+  +C+ G +    ++ L   L  C   +  ++T LI+GLC    + EA  LF  +
Sbjct: 221 CNALVLGYCRTGELRKACWLFLMMPLMGC-QRNEYSYTILIQGLCEAKCVREALVLFLMM 279

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN---------------GNGEFGVV 158
           +  GC P+V  +T LI+GLC++G    A  LF+ M                 G  + G +
Sbjct: 280 KRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRM 339

Query: 159 --------------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
                         C PD  TY+T+  GLC +   ++A+EL      E   P VVT+T+L
Sbjct: 340 NDALKIKELMEKNGCHPDDWTYNTLIYGLCDQK-TEEAEELLNNAVKEGFTPTVVTFTNL 398

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I G+C A  +++A  +  +MM    + ++  F  ++N L K  ++ EA  LL  +   G+
Sbjct: 399 INGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGL 458

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            P+   Y +++DG+C +G+V+ A E+   ME +GC  + ++Y  L+ G  K+K++  A++
Sbjct: 459 VPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMA 518

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           L ++M   GI P V+TY T
Sbjct: 519 LLTKMQKDGIIPNVITYTT 537



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 163/362 (45%), Gaps = 41/362 (11%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           P C +N     LA+    + +  ++ +L   GL PD  TYN +I  +CK G ++      
Sbjct: 148 PKC-YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCF 206

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             +L     P+  T  +L+ G C    + +A  LF  +   GC+ + ++YT LI GLC  
Sbjct: 207 RLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEA 266

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                AL LF  M          C P+   ++ +  GLCK G V  A+ LF  M    + 
Sbjct: 267 KCVREALVLFLMMKRDG------CSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVV 320

Query: 196 PDVVTYTSLIRGF--------------------CYANDW--------------NEAKCLF 221
           P V+TY ++I G+                    C+ +DW               EA+ L 
Sbjct: 321 PSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELL 380

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
              + +G  P VVTF  ++N  C   K D+A R+   M+    + D  V+  L++     
Sbjct: 381 NNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 440

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            R+  AKEL   + +NG + +V +Y  +I+GYCK+ +++ AL +   M   G +P   TY
Sbjct: 441 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTY 500

Query: 342 NT 343
           N+
Sbjct: 501 NS 502



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 161/337 (47%), Gaps = 10/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M++     P V +F  L   L K+        LF  +   G+ P + TYN +I  + K+G
Sbjct: 278 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 337

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R++    +   + ++   PD  T+ +LI GLC + +  EA  L       G  P V T+T
Sbjct: 338 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFT 396

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LING C       AL +  +M +        CK D   +  + + L K+  + +AKEL 
Sbjct: 397 NLINGYCMAEKFDDALRMKNKMMSSK------CKLDLQVFGKLINSLIKKDRLKEAKELL 450

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            ++    + P+V+TYTS+I G+C +   + A  +   M   G QPN  T+N +M  L K+
Sbjct: 451 NEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKD 510

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            K+ +A  LL  M + G+ P+   Y TL+ G C     + A  LF  ME NG   D  +Y
Sbjct: 511 KKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAY 570

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L +  CK    E A   YS ++ KG+  T V Y T
Sbjct: 571 AVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTT 604



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 162/375 (43%), Gaps = 54/375 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF-- 72
           P V ++  L         +D    LF+ +   GL PD + Y +L +  CK GR    +  
Sbjct: 530 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 589

Query: 73  ------------------------------VVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
                                          ++ R++    TPD+ T++ L+  LC + R
Sbjct: 590 IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 649

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + EA  +  ++   G K  +F YT LI+ + R G    A  ++ EM +         KP 
Sbjct: 650 LNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH------KPS 703

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
           A TY+   +  CKEG ++ A++L LKM+ E + PDVVTY  LI G  +    + A     
Sbjct: 704 ATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLK 763

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNG----------------KMDEASRLLELMIQIGVRP 266
            M+    +PN  T+ +++  L K                  ++D   +LLE M++ G+ P
Sbjct: 764 RMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNP 823

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
             + Y++L+ GFC  GR+  A  L   M   G   +   Y +LI   C  K  E ALS  
Sbjct: 824 TVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFV 883

Query: 327 SEMLSKGIRPTVVTY 341
           S M   G +P + +Y
Sbjct: 884 SIMSECGFQPQLESY 898



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 136/317 (42%), Gaps = 22/317 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++++L   L K K  +  L +  +++  G+   ++ Y ILI+   + G+      +
Sbjct: 632 PDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRM 691

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S   P A T+T  I   C E R+ +A  L  K+   G  PDV TY  LI+G   
Sbjct: 692 YNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGH 751

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITY----------------STITDGLCKEGF 178
            G+   A +  + M       G  C+P+  TY                S  T G+     
Sbjct: 752 MGYIDRAFSTLKRMV------GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIE 805

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D   +L  +M    +NP V TY+SLI GFC A    EA  L   M  +G+ PN   + +
Sbjct: 806 LDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTL 865

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++   C     ++A   + +M + G +P    Y  L+ G C  G   + K LF  +   G
Sbjct: 866 LIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 925

Query: 299 CMRDVFSYGILINGYCK 315
              D  ++ IL +G  K
Sbjct: 926 YNHDEVAWKILNDGLLK 942



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 139/317 (43%), Gaps = 17/317 (5%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++ IL   + +   +D    ++  + S G  P   TY + IN +CK GR+     ++ ++
Sbjct: 671 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKM 730

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL------ 132
            R    PD VT+  LI G      I  A +   ++    C+P+ +TY  L+  L      
Sbjct: 731 EREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLA 790

Query: 133 -CRTGHTIVALNLFE-----EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
             R+  T    NL E     ++     + G+   P   TYS++  G CK G +++A  L 
Sbjct: 791 YVRSVDTSGMWNLIELDITWQLLERMVKHGL--NPTVTTYSSLIAGFCKAGRLEEACLLL 848

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M  + ++P+   YT LI+  C    + +A      M + G QP + ++ +++  LC  
Sbjct: 849 DHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNE 908

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G  ++   L   ++++G   D   +  L DG    G V+   ++   ME   C     +Y
Sbjct: 909 GDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTY 968

Query: 307 GILINGYCKNKEIEGAL 323
            ++ N   K  E+  +L
Sbjct: 969 ALVTN---KMHEVSSSL 982


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 179/371 (48%), Gaps = 42/371 (11%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P PP    ++++     ++  Y + L + + L++ G   D    N++IN  C  G V  G
Sbjct: 149 PIPP---MYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEG 205

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL----------FTKLRAFGCKPD 121
             +L ++       D V++ +++KGLCA  R  +   L           +++   GC PD
Sbjct: 206 LEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPD 265

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC---------------------- 159
           +  Y T+I+G+C+ GH  VA  +   M +   +  VVC                      
Sbjct: 266 IRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLT 325

Query: 160 -------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                    D +T++ + D  C+ G VD+  EL  +M +    PDV+TYT++I GFC   
Sbjct: 326 EMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEG 385

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
             +EA  L   M   G +PN +++ +++  LC   +  +A  L+  MIQ G  P+   +N
Sbjct: 386 LIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFN 445

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           T+++  C  G V +A EL   M  NGC  D+ SY  +I+G  K  + E AL L + M++K
Sbjct: 446 TIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINK 505

Query: 333 GIRPTVVTYNT 343
           GI P V+TY++
Sbjct: 506 GITPNVITYSS 516



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 166/337 (49%), Gaps = 6/337 (1%)

Query: 12  PSPPPVCS-FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           P PP   + F ++ G   + +  D  L++   + S    P    Y+++I   C+ G  S 
Sbjct: 111 PVPPNAYTYFPVVRGLCGRGRIADA-LAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSS 169

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              VL  +     T D      +I  +C +  + E   +  KL  FGC+ D+ +Y  ++ 
Sbjct: 170 ALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLK 229

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVV----CKPDAITYSTITDGLCKEGFVDKAKELF 186
           GLC          L +EM   +     +    C PD   Y+TI DG+CKEG  + A E+ 
Sbjct: 230 GLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEIL 289

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M    + P+VV Y ++++G C A+ W +A+ L  EM  +    + VTFN++++  C+N
Sbjct: 290 SRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQN 349

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D    LLE M++ G  PD   Y T+++GFC  G ++ A  L  +M S GC  +  SY
Sbjct: 350 GLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISY 409

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            I++ G C  +    A  L S M+ +G  P  VT+NT
Sbjct: 410 TIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNT 446



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 161/337 (47%), Gaps = 16/337 (4%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSI----------GLFPDLYTYNILINCFCKMG 66
           + S+N +   L   K +  V  L   +  +          G  PD+  Y  +I+  CK G
Sbjct: 221 IVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEG 280

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
                  +L R+      P+ V + +++KG+C+  R  +A  L T++    C  D  T+ 
Sbjct: 281 HHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFN 340

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            L++  C+ G     + L E+M     E G  C PD ITY+T+ +G CKEG +D+A  L 
Sbjct: 341 ILVDFFCQNGLVDRVIELLEQML----EHG--CMPDVITYTTVINGFCKEGLIDEAVMLL 394

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M      P+ ++YT +++G C    W +A+ L   M+ QG  PN VTFN I+N LCK 
Sbjct: 395 KNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKK 454

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +++A  LL+ M+  G  PD   Y+T++DG    G+   A EL   M + G   +V +Y
Sbjct: 455 GLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITY 514

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +     +   I+  + ++  +    IR   V YN 
Sbjct: 515 SSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNA 551



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 161/318 (50%), Gaps = 6/318 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   +     ++    L   +       D  T+NIL++ FC+ G V     +
Sbjct: 299 PNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIEL 358

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L     PD +T+T++I G C E  I EA  L   + + GCKP+  +YT ++ GLC 
Sbjct: 359 LEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCS 418

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           T   + A  L   M          C P+ +T++TI + LCK+G V++A EL  +M     
Sbjct: 419 TERWVDAEELMSRMIQQG------CLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGC 472

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPD+++Y+++I G   A    EA  L   M+++G+ PNV+T++ +   L + G++D+  +
Sbjct: 473 NPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQ 532

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + +    +R DA +YN ++   C     + A +    M SNGCM +  +Y  LI G  
Sbjct: 533 MFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLA 592

Query: 315 KNKEIEGALSLYSEMLSK 332
               +  A  L SE+ S+
Sbjct: 593 SEGLLCEAQDLLSELCSR 610



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 169/351 (48%), Gaps = 17/351 (4%)

Query: 3   IFDYMLRMHPS---------PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY 53
           + D M+++H +          P +  +  +   + K  H++    +  R+ S GL P++ 
Sbjct: 243 LMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVV 302

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
            YN ++   C   R      +L  + +     D VTF  L+   C    +     L  ++
Sbjct: 303 CYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 362

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              GC PDV TYTT+ING C+ G    A+ L + M +        CKP+ I+Y+ +  GL
Sbjct: 363 LEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCG------CKPNTISYTIVLKGL 416

Query: 174 CK-EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           C  E +VD A+EL  +M  +   P+ VT+ ++I   C      +A  L  +M+  G  P+
Sbjct: 417 CSTERWVD-AEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPD 475

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           +++++ +++ L K GK +EA  LL +MI  G+ P+   Y+++       GR+++  ++F 
Sbjct: 476 LISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFD 535

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +++      D   Y  +I+  CK +E + A+   + M+S G  P   TY  
Sbjct: 536 NIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTA 586



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 149/284 (52%), Gaps = 8/284 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FNIL     +N   D V+ L +++   G  PD+ TY  +IN FCK G +    ++L  +
Sbjct: 338 TFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNM 397

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+ +++T ++KGLC+  R ++A  L +++   GC P+  T+ T+IN LC+ G  
Sbjct: 398 PSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLV 457

Query: 139 IVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A+ L ++M  NG       C PD I+YST+ DGL K G  ++A EL   M ++ I P+
Sbjct: 458 EQAIELLKQMLVNG-------CNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPN 510

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V+TY+S+          ++   +F  + D  ++ + V +N +++ LCK  + D A   L 
Sbjct: 511 VITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLA 570

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            M+  G  P+ S Y  L+ G    G +  A++L   + S   +R
Sbjct: 571 YMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSELCSRRAVR 614



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 150/314 (47%), Gaps = 19/314 (6%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
            + L++ G    +  YN ++  +C++G+V     +   +      P+A T+  +++GLC 
Sbjct: 72  VRALDAAGNAAGVVDYNAMVAGYCRVGQVEAARRLAAAVP---VPPNAYTYFPVVRGLCG 128

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             RI +A A+  ++ +  C P    Y  +I   CR+G    AL + E +           
Sbjct: 129 RGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTL---- 184

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
             D    + + + +C +G VD+  E+  K+       D+V+Y ++++G C A  W + + 
Sbjct: 185 --DTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEE 242

Query: 220 LFIEMM----------DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
           L  EM+            G  P++  +  I++ +CK G  + A+ +L  M   G++P+  
Sbjct: 243 LMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVV 302

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            YNT++ G C   R  +A+EL   M    C  D  ++ IL++ +C+N  ++  + L  +M
Sbjct: 303 CYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 362

Query: 330 LSKGIRPTVVTYNT 343
           L  G  P V+TY T
Sbjct: 363 LEHGCMPDVITYTT 376



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 108/264 (40%), Gaps = 22/264 (8%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
            ++LI+ LC   R  +A      L A G    V  Y  ++ G CR G    A  L     
Sbjct: 55  LSALIRSLCVAGRTADA---VRALDAAGNAAGVVDYNAMVAGYCRVGQVEAARRL----- 106

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
                  V   P+A TY  +  GLC  G +  A  +  +M   +  P    Y  +I   C
Sbjct: 107 ----AAAVPVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESAC 162

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            +  ++ A  +   +  +G   +    N+++N +C  G +DE   +L  +   G   D  
Sbjct: 163 RSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIV 222

Query: 270 VYNTLMDGFCLTGRVNRAKEL----------FVSMESNGCMRDVFSYGILINGYCKNKEI 319
            YN ++ G C   R    +EL             M  +GC  D+  Y  +I+G CK    
Sbjct: 223 SYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHH 282

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           E A  + S M S G++P VV YNT
Sbjct: 283 EVANEILSRMPSYGLKPNVVCYNT 306


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 172/327 (52%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N L      +   D  L + +R+ + G+ P++ TY  LI  +CK   +   F +  
Sbjct: 222 VVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYE 281

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++RS   PD VT ++L+ GLC + +  EA ALF ++   G  P+  TY TLI+ L +  
Sbjct: 282 GMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKAR 341

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               +L L  EM +     GVV   D + Y+ + D L KEG +++AK++    + +NI P
Sbjct: 342 RGSESLGLLGEMVS----RGVVM--DLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITP 395

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTYT L+   C A + + A+ + ++M ++ V PNVVTF+ I+N L K G + +A+  +
Sbjct: 396 NFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYM 455

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M   G+ P+   Y TL+DGF        A +++  M   G   + F    L+NG  KN
Sbjct: 456 RKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKN 515

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             IEGA +L+ +M  +G+    V Y T
Sbjct: 516 GNIEGAEALFKDMDERGLLLDHVNYTT 542



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 169/343 (49%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +++ M+R     P V + + L   L ++  +    +LF+ ++ IG+ P+  TY  LI+
Sbjct: 277 FSLYEGMVR-SGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLID 335

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K  R S    +LG ++      D V +T+L+  L  E +I EA  +    ++    P
Sbjct: 336 SLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITP 395

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  TYT L++  CR G+   A  +  +M     E  V+  P+ +T+S+I +GL K G + 
Sbjct: 396 NFVTYTVLVDAHCRAGNIDGAEQVLLQME----EKSVI--PNVVTFSSIINGLVKRGCLG 449

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA +   KMKD  I P+VVTY +LI GF        A  ++ +M+ +GV+ N    + ++
Sbjct: 450 KAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLV 509

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N L KNG ++ A  L + M + G+  D   Y TLMDG   TG +  A ++   +      
Sbjct: 510 NGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLS 569

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D   Y + IN  C   +   A S   EM + G+ P   TYNT
Sbjct: 570 PDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNT 612



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 167/378 (44%), Gaps = 42/378 (11%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +   ++  + SP  V  +N+   CL     +    S  K + + GL PD  TYN +I 
Sbjct: 557 FKVGQELMEKNLSPDAVV-YNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIA 615

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ G+ S    +L  + R+   P+ +T+T+L+ GL     + +A  L  ++ + G  P
Sbjct: 616 ARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAP 675

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
              T+  ++     +    V L + E M       G     D   Y+T+   LC  G   
Sbjct: 676 TSLTHQRVLQACSGSRRPDVILEIHELM------MGAGLHADITVYNTLVHVLCCHGMAR 729

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  +  +M    I PD +T+ +LI G C ++  + A  ++ +M+ QG+ PN+ TFN ++
Sbjct: 730 NATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLL 789

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPD--------------------------------- 267
             L   G++ EA  +L  M ++G+ P+                                 
Sbjct: 790 GGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFI 849

Query: 268 --ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
             AS YN+LM  F   G +N+AKELF  M+  G +    +Y IL+NG+ K +       L
Sbjct: 850 PKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRIL 909

Query: 326 YSEMLSKGIRPTVVTYNT 343
             +M   G +P+  T ++
Sbjct: 910 LKDMKELGFKPSKGTISS 927



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 163/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L G   K K  D   SL++ +   G+ PD+ T + L++  C+ G+ S  + +
Sbjct: 255 PNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYAL 314

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+ VT+ +LI  L    R  E+  L  ++ + G   D+  YT L++ L +
Sbjct: 315 FREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGK 374

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A ++     + N        P+ +TY+ + D  C+ G +D A+++ L+M+++++
Sbjct: 375 EGKIEEAKDVLRHAQSDN------ITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSV 428

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVT++S+I G        +A     +M D G+ PNVVT+  +++   K    + A  
Sbjct: 429 IPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALD 488

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M+  GV  +  V ++L++G    G +  A+ LF  M+  G + D  +Y  L++G  
Sbjct: 489 VYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLF 548

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +  A  +  E++ K + P  V YN
Sbjct: 549 KTGNMPAAFKVGQELMEKNLSPDAVVYN 576



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 163/364 (44%), Gaps = 41/364 (11%)

Query: 15  PPVCSFNILF------GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           P V +F+ +       GCL K   Y       +++   G+ P++ TY  LI+ F K    
Sbjct: 430 PNVVTFSSIINGLVKRGCLGKAADY------MRKMKDSGIAPNVVTYGTLIDGFFKFQGQ 483

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                V   +L      +     SL+ GL     I  A ALF  +   G   D   YTTL
Sbjct: 484 EAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTL 543

Query: 129 INGLCRTGHTIVALNLFEEMANGN------------------GEFGVV-----------C 159
           ++GL +TG+   A  + +E+   N                  G+F               
Sbjct: 544 MDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGL 603

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           +PD  TY+T+    C+EG   KA +L  +MK  +I P+++TYT+L+ G   A    +AK 
Sbjct: 604 EPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKF 663

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  EM   G  P  +T   ++     + + D    + ELM+  G+  D +VYNTL+   C
Sbjct: 664 LLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLC 723

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G    A  +   M + G   D  ++  LI G+CK+  ++ A ++Y++ML +G+ P + 
Sbjct: 724 CHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIA 783

Query: 340 TYNT 343
           T+NT
Sbjct: 784 TFNT 787



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 145/295 (49%), Gaps = 12/295 (4%)

Query: 51  DLYTYNILINCFCKMG--RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108
           D  +YNI +    + G  R++P   VL  + +   + D VT ++ + GLC    + EAAA
Sbjct: 114 DTVSYNIFLAALSEQGHGRLAP--PVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAA 171

Query: 109 LFTKL-RAFGCKP-DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
           L   L R  G    DV  +  LI+G C+      AL + E M       GV    D + Y
Sbjct: 172 LAEMLVRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQ----GVAL--DVVGY 225

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +++  G    G  D A E+  +MK + + P+VVTYT+LI  +C     +EA  L+  M+ 
Sbjct: 226 NSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVR 285

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            GV P+VVT + +++ LC++G+  EA  L   M +IGV P+   Y TL+D      R + 
Sbjct: 286 SGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSE 345

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  L   M S G + D+  Y  L++   K  +IE A  +     S  I P  VTY
Sbjct: 346 SLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTY 400



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 142/297 (47%), Gaps = 8/297 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVL----GRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           D  T N +I  +C +  + P   +L    G   +S    D V++   +  L  +     A
Sbjct: 75  DTLTLNSIILSYCSLRSLRPALSLLRSSSGPQSQSQVAADTVSYNIFLAALSEQGHGRLA 134

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             + +++   G   D  T +T + GLCRTG    A  L E +  G G  G+    D + +
Sbjct: 135 PPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEMLVRGRGIDGL----DVVGW 190

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + + DG CK   +  A  +  +M  + +  DVV Y SL+ GF ++ D + A  +   M  
Sbjct: 191 NALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKA 250

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            GV+PNVVT+  ++ E CK   MDEA  L E M++ GV PD    + L+DG C  G+ + 
Sbjct: 251 DGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSE 310

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A  LF  M+  G   +  +Y  LI+   K +    +L L  EM+S+G+   +V Y  
Sbjct: 311 AYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTA 367



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 7/282 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           +P  +    +L  C + ++  D +L + + +   GL  D+  YN L++  C  G      
Sbjct: 674 APTSLTHQRVLQAC-SGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNAT 732

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           VVL  +L     PD +TF +LI G C  S +  A A++ ++   G  P++ T+ TL+ GL
Sbjct: 733 VVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGL 792

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
              G    A  +  +M        V  +P+ +TY  +  G  K+    +A  L+ +M  +
Sbjct: 793 ESAGRIGEADTVLSDMKK------VGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSK 846

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              P   TY SL+  F  A   N+AK LF EM  +GV     T+++++N   K     E 
Sbjct: 847 GFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEV 906

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
             LL+ M ++G +P     +++   F   G    A+ L  ++
Sbjct: 907 RILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARRLLKTL 948



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 109/216 (50%), Gaps = 6/216 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ PD  T+N LI   CK   +   F +  ++L    +P+  TF +L+ GL +  RI EA
Sbjct: 742 GIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEA 801

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             + + ++  G +P+  TY  L+ G  +  + + AL L+ EM +     G +  P A TY
Sbjct: 802 DTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSK----GFI--PKASTY 855

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +++     K G +++AKELF +MK   +     TY  L+ G+    +  E + L  +M +
Sbjct: 856 NSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKE 915

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
            G +P+  T + +     + G   EA RLL+ + ++
Sbjct: 916 LGFKPSKGTISSMSRAFSRPGMTGEARRLLKTLFKV 951



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 121/271 (44%), Gaps = 15/271 (5%)

Query: 82  CFTP---DAVTFTSLIKGLCAESRIMEAAALF----TKLRAFGCKPDVFTYTTLINGLCR 134
           CF P   D +T  S+I   C+   +  A +L               D  +Y   +  L  
Sbjct: 68  CFRPVPGDTLTLNSIILSYCSLRSLRPALSLLRSSSGPQSQSQVAADTVSYNIFLAALSE 127

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF-LKMKDEN 193
            GH  +A  +  EM      +      D +T ST   GLC+ G V +A  L  + ++   
Sbjct: 128 QGHGRLAPPVLSEMCKRGVSW------DGVTVSTALVGLCRTGLVGEAAALAEMLVRGRG 181

Query: 194 INP-DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
           I+  DVV + +LI G+C   D   A  +   M  QGV  +VV +N ++     +G  D A
Sbjct: 182 IDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAA 241

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
             ++E M   GV P+   Y  L+  +C    ++ A  L+  M  +G + DV +   L++G
Sbjct: 242 LEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDG 301

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            C++ +   A +L+ EM   G+ P  VTY T
Sbjct: 302 LCRDGQFSEAYALFREMDKIGVAPNHVTYCT 332


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 152/285 (53%), Gaps = 5/285 (1%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P L  Y  +I   CK G +   + +L  + R  +  D +T+ +LI G C    I  A  L
Sbjct: 255 PTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYEL 314

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             ++++    PD+FTY  LI GLCR      A +L   + N +      C P+ ++Y+T+
Sbjct: 315 LEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDD-----CTPNVVSYNTL 369

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DG  K   V+ A +LFL+M     +PDVVTY++LIRG C A   +EA     EM+ + +
Sbjct: 370 IDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKI 429

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            P V  ++ +++ LC+ G++D AS + + M+  G +P+ +VYN+L+ G C TGR+  AK 
Sbjct: 430 LPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKL 489

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
               M   GC  D  +YG LI G C+    + A  LY   L +GI
Sbjct: 490 RVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGI 534



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 166/332 (50%), Gaps = 12/332 (3%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P   ++ IL   L +    D     F+ +    + P+ +TY ++IN   K G+V+   
Sbjct: 188 SIPCAATWTILIDGLFRAIRVDEACYYFEEMKHTAI-PNNWTYTVVINGLVKAGKVAEA- 245

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
               R+L+    P    +TS+I G C    + +A  L   ++  G + D  TY TLI+G 
Sbjct: 246 ---ERVLQEMPVPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGH 302

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           CR      A  L EEM + +        PD  TY  +  GLC+   + +A++L   +++E
Sbjct: 303 CRLQEIDRAYELLEEMKSND------FVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNE 356

Query: 193 N-INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           +   P+VV+Y +LI GF  A   N+A  LF+EM+  G  P+VVT++ ++  LC  G+  E
Sbjct: 357 DDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASE 416

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A   LE M+   + P   VY++++ G C  G ++ A  +F SM +NGC  ++  Y  LI 
Sbjct: 417 AHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIY 476

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G CK   +  A     EM  +G  P  VTY T
Sbjct: 477 GLCKTGRLCDAKLRVKEMTERGCSPDGVTYGT 508



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 161/359 (44%), Gaps = 41/359 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG-- 76
           ++N L     + +  D    L + + S    PD++TY+ILI   C+  R+S    +LG  
Sbjct: 294 TYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTL 353

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R    C TP+ V++ +LI G    +R+ +A  LF ++   G  PDV TY+TLI GLC  G
Sbjct: 354 RNEDDC-TPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAG 412

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A +  EEM       G    P    YS++  GLC+ G +D A  +F  M      P
Sbjct: 413 RASEAHSYLEEMV------GKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQP 466

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE----- 251
           ++  Y SLI G C      +AK    EM ++G  P+ VT+  ++  LC+  + DE     
Sbjct: 467 NLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLY 526

Query: 252 ---------------------------ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
                                      A R+L +++  G  P A  Y T+++  C    +
Sbjct: 527 VRSLEQGIEISETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNL 586

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A++L   M   G   D  +   L+   C+  +   A++   EM+  G +P+V TY+T
Sbjct: 587 AEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYST 645



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 156/328 (47%), Gaps = 15/328 (4%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N  +  L +    +    LFK      L PD  TY ILI   C  G++     +  
Sbjct: 90  VHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLYE 149

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     P  +T   L+  LC    +  A   F K+ +  C     T+T LI+GL R  
Sbjct: 150 EMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSIPCAA---TWTILIDGLFRAI 206

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A   FEEM +          P+  TY+ + +GL K G V +A+ +  +M      P
Sbjct: 207 RVDEACYYFEEMKH-------TAIPNNWTYTVVINGLVKAGKVAEAERVLQEMP----VP 255

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            +  YTS+I G C A D  +A  L  +M  +G Q + +T+N +++  C+  ++D A  LL
Sbjct: 256 TLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELL 315

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-NGCMRDVFSYGILINGYCK 315
           E M      PD   Y+ L+ G C   R++ A++L  ++ + + C  +V SY  LI+G+ K
Sbjct: 316 EEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSK 375

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +  A  L+ EM++ G  P VVTY+T
Sbjct: 376 AARVNDAYQLFLEMVTAGQHPDVVTYST 403



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 155/365 (42%), Gaps = 45/365 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N L    +K    +    LF  + + G  PD+ TY+ LI   C  GR S     
Sbjct: 361 PNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSY 420

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF------------------------ 110
           L  ++     P    ++S+I GLC    +  A+ +F                        
Sbjct: 421 LEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCK 480

Query: 111 ------TKLRA-----FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                  KLR       GC PD  TY TLI GLCR   T  A +L+      + E G+  
Sbjct: 481 TGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVR----SLEQGI-- 534

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
               I+ ++    +     +++A+ +   +     +P    Y ++I   C  N+  EA+ 
Sbjct: 535 ---EISETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQ 591

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L  +M+  G++P+  T + ++  +C+  K   A   LE M+++G +P    Y+TL++   
Sbjct: 592 LLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALF 651

Query: 280 LTGRVNRAKELFVSMESN-GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
             G+ + A  +   + S+  C  D   Y  LI  Y    ++E A ++  E+ SK    ++
Sbjct: 652 KAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSI 711

Query: 339 VTYNT 343
           V YNT
Sbjct: 712 VAYNT 716



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 132/326 (40%), Gaps = 40/326 (12%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+     P      ++++G     +  D  L + K +   G  PD  TY  LI   
Sbjct: 455 VFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRV-KEMTERGCSPDGVTYGTLIVGL 513

Query: 63  CKMGRVSPG-------------------FVVLG---------RILRSCF----TPDAVTF 90
           C+  R                        VV+          R+LR       +P A  +
Sbjct: 514 CRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFY 573

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
            ++I+ LC E+ + EA  L   +   G KPD  T   L+  +CR    +VA+   EEM  
Sbjct: 574 ATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVR 633

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFC 209
                 +  KP   TYST+ + L K G   +A  +  ++    +  PD + Y  LI  + 
Sbjct: 634 ------LGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYS 687

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
             +   EA+ +  E+  +    ++V +N ++  L +   +     LL  M +     + +
Sbjct: 688 NQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEA 747

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSME 295
            +N L+ GFC  G+ +RA  +   M+
Sbjct: 748 TFNILIQGFCRLGQTDRAVRVLSEMK 773



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 110/246 (44%), Gaps = 6/246 (2%)

Query: 45  SIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104
           + G  P  + Y  +I   CK   ++    +L  ++ +   PD  T  +L+  +C + + +
Sbjct: 563 ATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAV 622

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
            A A   ++   G KP V TY+TL+N L + G    A  +   + +        C PD +
Sbjct: 623 VAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTS-----CFPDEL 677

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            Y  +      +  V++A+ +  ++K +     +V Y +L++G     +      L  EM
Sbjct: 678 WYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREM 737

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
                  N  TFN+++   C+ G+ D A R+L  M ++ + P A++   L+D      R 
Sbjct: 738 KRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEMKKV-LTPSAAIIKFLVDELARAERE 796

Query: 285 NRAKEL 290
             +K+L
Sbjct: 797 QESKDL 802



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%)

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
           R     YN   +    TG+   A  LF        + D  +YGILI G C   +++ A S
Sbjct: 87  RHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACS 146

Query: 325 LYSEMLSKGIRPTVVT 340
           LY EM+ +G+RP V+T
Sbjct: 147 LYEEMVDRGLRPVVLT 162



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%)

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           Q  +  V T+N     L + G+ +EA RL +      + PD+  Y  L+ G C  G++  
Sbjct: 84  QDFRHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKL 143

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           A  L+  M   G    V +   L+N  CK+  +E AL  + +M S
Sbjct: 144 ACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSS 188


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 188/401 (46%), Gaps = 79/401 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +   N +   L K K  D   S+ +++   G+ PDL+TY+++I+  CK   +     V
Sbjct: 81  PKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERV 140

Query: 75  LGRILRSCFTPDAVTFTSLIKG-----------------------------------LCA 99
           L +++ +   P+++T+ SLI G                                   L  
Sbjct: 141 LEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFK 200

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTT-------------------------------- 127
             R  EA  +F  +   G KPD+ +Y+T                                
Sbjct: 201 HGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNK 260

Query: 128 -----LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
                LIN   R G    A+ +FE+M N     G++  PD +T++T+   LC+ G +D A
Sbjct: 261 HVFNILINAYARCGMMDKAMLIFEDMQNK----GMI--PDTVTFATVISSLCRIGRLDDA 314

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-QPNVVTFNVIMN 241
              F  M D  + P    Y  LI+G C   +  +AK L  EMM++ +  P V  F+ I+N
Sbjct: 315 LHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIIN 374

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G++ E   ++++M+Q G RP+   +N+LM+G+CL G +  A  L  +M S G   
Sbjct: 375 NLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEP 434

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + + YG L++GYCKN  I+ AL+++ +ML KG++PT V Y+
Sbjct: 435 NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYS 475



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 169/342 (49%), Gaps = 6/342 (1%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           CIFD M+   P P  +    +L G   A +     V ++F  + + G+ P+ + +NILIN
Sbjct: 209 CIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILIN 268

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            + + G +    ++   +      PD VTF ++I  LC   R+ +A   F  +   G  P
Sbjct: 269 AYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPP 328

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               Y  LI G C  G  + A  L  EM N +     +  P    +S+I + LCKEG V 
Sbjct: 329 SEAVYGCLIQGCCNHGELVKAKELISEMMNKD-----IPPPGVKYFSSIINNLCKEGRVA 383

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           + K++   M      P+VVT+ SL+ G+C   +  EA  L   M   G++PN   +  ++
Sbjct: 384 EGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLV 443

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CKNG++D+A  +   M+  GV+P + +Y+ ++ G     R   AK++F  M  +G  
Sbjct: 444 DGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTT 503

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             + +YG+++ G C+N   + A  L  ++ +  ++  ++T+N
Sbjct: 504 VSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 545



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 156/296 (52%), Gaps = 9/296 (3%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P ++TYNILI+C+ ++ R   G  ++GR+L++   PD  ++ SLI G   +  + +A  L
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCL 70

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F ++   G  P +    ++I  LC+      A ++ ++M +          PD  TYS I
Sbjct: 71  FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG------IAPDLFTYSLI 124

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DGLCK   +DKA+ +  +M +    P+ +TY SLI G+  +  WNE+  +F +M   GV
Sbjct: 125 IDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGV 184

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR--VNRA 287
            P V   N  ++ L K+G+ +EA  + + M+  G +PD   Y+T++ G+       +   
Sbjct: 185 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADV 244

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +F  M + G   +   + ILIN Y +   ++ A+ ++ +M +KG+ P  VT+ T
Sbjct: 245 HNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 300



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 169/366 (46%), Gaps = 44/366 (12%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SPP + ++NIL  C  +    D  L++  RL   GL PD ++Y+ LI  F K G V    
Sbjct: 10  SPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAH 68

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   ++     P  +   S+IK LC    + +A ++  K+   G  PD+FTY+ +I+GL
Sbjct: 69  CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 128

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG-------------------- 172
           C++     A  + E+M           +P++ITY+++  G                    
Sbjct: 129 CKSKAMDKAERVLEQMVEAG------TRPNSITYNSLIHGYSISGMWNESVRVFKQMSSC 182

Query: 173 ---------------LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND--WN 215
                          L K G  ++AK +F  M  +   PD+++Y++++ G+  A D    
Sbjct: 183 GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLA 242

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           +   +F  M+ +G+ PN   FN+++N   + G MD+A  + E M   G+ PD   + T++
Sbjct: 243 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 302

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
              C  GR++ A   F  M   G       YG LI G C + E+  A  L SEM++K I 
Sbjct: 303 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIP 362

Query: 336 PTVVTY 341
           P  V Y
Sbjct: 363 PPGVKY 368



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 168/367 (45%), Gaps = 43/367 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ ML    +P     FNIL    A+    D  + +F+ + + G+ PD  T+  +I+  
Sbjct: 247 IFNLMLTKGIAPNKHV-FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 305

Query: 63  CKMGR---------------VSPGFVVLGRILRSCFT---------------------PD 86
           C++GR               V P   V G +++ C                       P 
Sbjct: 306 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 365

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
              F+S+I  LC E R+ E   +   +   G +P+V T+ +L+ G C  G+   A  L +
Sbjct: 366 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 425

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
            MA+      +  +P+   Y T+ DG CK G +D A  +F  M  + + P  V Y+ ++ 
Sbjct: 426 AMAS------IGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH 479

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G   A     AK +F EM++ G   ++ T+ V++  LC+N   DEA+ LLE +  + V+ 
Sbjct: 480 GLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 539

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   +N ++      GR   AKELF ++ + G + ++ +Y ++I    K +  E A +L+
Sbjct: 540 DIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLF 599

Query: 327 SEMLSKG 333
             +   G
Sbjct: 600 ISVEKSG 606



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 6/253 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P +  ++ +IN  CK GRV+ G  ++  ++++   P+ VTF SL++G C    + EA AL
Sbjct: 364 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 423

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
              + + G +P+ + Y TL++G C+ G    AL +F +M +     GV  KP ++ YS I
Sbjct: 424 LDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHK----GV--KPTSVLYSII 477

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GL +      AK++F +M +      + TY  ++ G C  N  +EA  L  ++    V
Sbjct: 478 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNV 537

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           + +++TFN++++ + K G+  EA  L + +   G+ P+   Y+ ++           A  
Sbjct: 538 KFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADN 597

Query: 290 LFVSMESNGCMRD 302
           LF+S+E +G   D
Sbjct: 598 LFISVEKSGHASD 610



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 6/274 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V  F+ +   L K         +   +   G  P++ T+N L+  +C +G +   F 
Sbjct: 363 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 422

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      P+   + +L+ G C   RI +A  +F  +   G KP    Y+ +++GL 
Sbjct: 423 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLF 482

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +   T  A  +F EM        +       TY  +  GLC+    D+A  L  K+   N
Sbjct: 483 QARRTTAAKKMFHEMIESGTTVSIH------TYGVVLGGLCRNNCTDEANMLLEKLFAMN 536

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  D++T+  +I          EAK LF  +   G+ PN+ T+++++  L K    +EA 
Sbjct: 537 VKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEAD 596

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
            L   + + G   D+ + N ++        V +A
Sbjct: 597 NLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKA 630


>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
 gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
          Length = 316

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 167/315 (53%), Gaps = 25/315 (7%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  P++ TY++LINC CK G  +    +   +++S   P+A T+ SL+ G   E  +++ 
Sbjct: 5   GQGPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDM 64

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +   +   G +PD   +   I   C+ G    A   F +M     + G +  PD +TY
Sbjct: 65  NNVKDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQ----QLGFM--PDIVTY 118

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+ DGLCK G +D A   F +M D+ ++P+++T+T+LI GF     W +A+ LF EMMD
Sbjct: 119 TTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMD 178

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G+ PNV TFN +++ L K GK+ EA +L +LM + G +P+   YNT++ G+ + G V  
Sbjct: 179 RGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGE 238

Query: 287 AKELFVSM----------ESNGCMRDVFSYGI---------LINGYCKNKEIEGALSLYS 327
             +L   M            N  +  + S G+         LI+  C++  IE  L+L+ 
Sbjct: 239 VMKLLDDMLLIGLKPNAVNLNTLLDGMLSIGLKPNVDTCKTLIDSCCEDDRIEDILTLFR 298

Query: 328 EMLSKGIRPTVVTYN 342
           EMLSK  +   +T N
Sbjct: 299 EMLSKADKTDTITEN 313



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 137/264 (51%), Gaps = 6/264 (2%)

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R    P+ VT++ LI  LC      EA  +F  +   G KP+  TY +L++G    G+ +
Sbjct: 3   RDGQGPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGN-L 61

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
           V +N  +++   NG      +PD   ++      CK G +D+A   F KM+     PD+V
Sbjct: 62  VDMNNVKDLMVQNG-----MRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIV 116

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TYT++I G C     ++A   F +M+D G+ PN++TF  +++     GK ++A  L   M
Sbjct: 117 TYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEM 176

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           +  G+ P+ + +N+++D     G+V  A++LF  M   G   +V SY  +I+GY    E+
Sbjct: 177 MDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEV 236

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
              + L  +ML  G++P  V  NT
Sbjct: 237 GEVMKLLDDMLLIGLKPNAVNLNT 260



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 87/155 (56%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M  +   P+VVTY+ LI   C +    EA+ +F  M+  G +PN  T+  +++     G 
Sbjct: 1   MSRDGQGPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGN 60

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           + + + + +LM+Q G+RPD  V+N  +  +C  GR++ A   F  M+  G M D+ +Y  
Sbjct: 61  LVDMNNVKDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTT 120

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +I+G CK   ++ A+S + +M+  G+ P ++T+ T
Sbjct: 121 VIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTT 155



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 22/258 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    FNI      K    D     F ++  +G  PD+ TY  +I+  CK+GR+      
Sbjct: 78  PDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSR 137

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++    +P+ +TFT+LI G     +  +A  LF ++   G  P+V T+ ++I+ L +
Sbjct: 138 FCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRLFK 197

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  LF+ M           KP+ ++Y+T+  G    G V +  +L   M    +
Sbjct: 198 EGKVTEARKLFDLMPRAGA------KPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGL 251

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V   +L+ G                M+  G++PNV T   +++  C++ ++++   
Sbjct: 252 KPNAVNLNTLLDG----------------MLSIGLKPNVDTCKTLIDSCCEDDRIEDILT 295

Query: 255 LLELMIQIGVRPDASVYN 272
           L   M+    + D    N
Sbjct: 296 LFREMLSKADKTDTITEN 313



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 16/135 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +FN +   L K         LF  +   G  P++ +YN +I+ +   G V     
Sbjct: 182 PPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMK 241

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +L     P+AV   +L+ G+                 + G KP+V T  TLI+  C
Sbjct: 242 LLDDMLLIGLKPNAVNLNTLLDGML----------------SIGLKPNVDTCKTLIDSCC 285

Query: 134 RTGHTIVALNLFEEM 148
                   L LF EM
Sbjct: 286 EDDRIEDILTLFREM 300


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 164/322 (50%), Gaps = 6/322 (1%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N L   L ++++++   S ++++     F +  + + L+ C+ +M +    F VL  +L+
Sbjct: 76  NNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLK 135

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
             F  +      L+KGLC      +A +L  ++R     PDVF+Y T+I G C       
Sbjct: 136 RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEK 195

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL L  EM  G+G     C    +T+  + D  CK G +D+A     +MK   +  D+V 
Sbjct: 196 ALELANEM-KGSG-----CSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVV 249

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           YTSLIRGFC   + +  K LF E++++G  P  +T+N ++   CK G++ EAS + E MI
Sbjct: 250 YTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMI 309

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + GVRP+   Y  L+DG C  G+   A +L   M       +  +Y I+IN  CK+  + 
Sbjct: 310 ERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVA 369

Query: 321 GALSLYSEMLSKGIRPTVVTYN 342
            A+ +   M  +  RP  +TYN
Sbjct: 370 DAVEIVELMKKRRTRPDNITYN 391



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 170/329 (51%), Gaps = 8/329 (2%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
            + ++ IL     K    D  +   K +  +GL  DL  Y  LI  FC  G +  G  + 
Sbjct: 211 SLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALF 270

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             +L    +P A+T+ +LI+G C   ++ EA+ +F  +   G +P+V+TYT LI+GLC  
Sbjct: 271 DEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGV 330

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           G T  AL L   M   + E      P+A+TY+ I + LCK+G V  A E+   MK     
Sbjct: 331 GKTKEALQLLNLMIEKDEE------PNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTR 384

Query: 196 PDVVTYTSLIRGFCYANDWNEA-KCLFIEMMDQG-VQPNVVTFNVIMNELCKNGKMDEAS 253
           PD +TY  L+ G C   D +EA K L++ + D     P+V+++N +++ LCK  ++ +A 
Sbjct: 385 PDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQAL 444

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + +L+++     D    N L++     G VN+A EL+  +  +  +R+  +Y  +I+G+
Sbjct: 445 DIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CK   +  A  L  +M    ++P+V  YN
Sbjct: 505 CKTGMLNVAKGLLCKMRVSELQPSVFDYN 533



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 166/327 (50%), Gaps = 13/327 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V + NIL   L +N      +SL + +    L PD+++YN +I  FC+   +     +  
Sbjct: 142 VYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELAN 201

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +  S  +   VT+  LI   C   ++ EA     +++  G + D+  YT+LI G C  G
Sbjct: 202 EMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCG 261

Query: 137 HTIVALNLFEE-MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                  LF+E +  G+        P AITY+T+  G CK G + +A E+F  M +  + 
Sbjct: 262 ELDRGKALFDEVLERGDS-------PCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVR 314

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P+V TYT LI G C      EA  L   M+++  +PN VT+N+I+N+LCK+G + +A  +
Sbjct: 315 PNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEI 374

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM--ESNGCMRDVFSYGILINGY 313
           +ELM +   RPD   YN L+ G C  G ++ A +L   M  +S+    DV SY  LI+G 
Sbjct: 375 VELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGL 434

Query: 314 CKNKEIEGALSLYS---EMLSKGIRPT 337
           CK   +  AL +Y    E L  G R T
Sbjct: 435 CKENRLHQALDIYDLLVEKLGAGDRVT 461



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 168/370 (45%), Gaps = 40/370 (10%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            +FD +L    SP  + ++N L     K         +F+ +   G+ P++YTY  LI+ 
Sbjct: 268 ALFDEVLERGDSPCAI-TYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDG 326

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C +G+      +L  ++     P+AVT+  +I  LC +  + +A  +   ++    +PD
Sbjct: 327 LCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPD 386

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE----- 176
             TY  L+ GLC  G    A  L   M   +        PD I+Y+ +  GLCKE     
Sbjct: 387 NITYNILLGGLCAKGDLDEASKLLYLMLKDSS----YTDPDVISYNALIHGLCKENRLHQ 442

Query: 177 ------------------------------GFVDKAKELFLKMKDENINPDVVTYTSLIR 206
                                         G V+KA EL+ ++ D  I  +  TYT++I 
Sbjct: 443 ALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMID 502

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           GFC     N AK L  +M    +QP+V  +N +++ LCK G +D+A RL E M +    P
Sbjct: 503 GFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFP 562

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   +N ++DG    G +  A+ L V M   G   D+F+Y  LIN + K   ++ A+S +
Sbjct: 563 DVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFF 622

Query: 327 SEMLSKGIRP 336
            +M+  G  P
Sbjct: 623 DKMVDSGFEP 632



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 6/267 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P V S+N L   L K       L ++  L       D  T NIL+N   K G V+   
Sbjct: 420 TDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAM 479

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +  +I  S    ++ T+T++I G C    +  A  L  K+R    +P VF Y  L++ L
Sbjct: 480 ELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSL 539

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C+ G    A  LFEEM   N        PD ++++ + DG  K G +  A+ L + M   
Sbjct: 540 CKEGSLDQAWRLFEEMQRDNN------FPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRA 593

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            ++PD+ TY+ LI  F      +EA   F +M+D G +P+    + ++      G+ D+ 
Sbjct: 594 GLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKL 653

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFC 279
           + L++ ++   +  D  +  T+MD  C
Sbjct: 654 TELVKKLVDKDIVLDKELTCTVMDYMC 680



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%)

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +V  +  L++G C   +  +A  L  EM    + P+V ++N ++   C+  ++++A  L 
Sbjct: 141 NVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELA 200

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M   G       +  L+D FC  G+++ A      M+  G   D+  Y  LI G+C  
Sbjct: 201 NEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDC 260

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            E++   +L+ E+L +G  P  +TYNT
Sbjct: 261 GELDRGKALFDEVLERGDSPCAITYNT 287



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 66/120 (55%)

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+ +G   NV   N+++  LC+N +  +A  LL  M +  + PD   YNT++ GFC    
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +A EL   M+ +GC   + ++GILI+ +CK  +++ A+    EM   G+   +V Y +
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTS 252



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 64/145 (44%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R+    P V  +N L   L K    D    LF+ +     FPD+ ++NI+I+   K G 
Sbjct: 520 MRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGD 579

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L  + R+  +PD  T++ LI        + EA + F K+   G +PD     +
Sbjct: 580 IKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDS 639

Query: 128 LINGLCRTGHTIVALNLFEEMANGN 152
           ++      G T     L +++ + +
Sbjct: 640 VLKYCISQGETDKLTELVKKLVDKD 664


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 7/304 (2%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F+     G+  D   Y+I+I   CK    + G  +L  +    + P   TFTS+I    A
Sbjct: 243 FRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVA 302

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
           +  ++EA  L  ++   G   ++   T+L+ G C  G+   ALNLF ++   +G F    
Sbjct: 303 QGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITE-DGLF---- 357

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            P+ +TYS + +G C  G ++KA EL+ +MK   I P V    SL+RG+  A  W EA  
Sbjct: 358 -PNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASK 416

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           LF E +D GV  N+ T+N++M+ LCK GKMDEA  LL+ M+  G+ P+   YN ++ G C
Sbjct: 417 LFDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHC 475

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++ A  +F  M +     +V +Y ILI+G  K  + E AL L+ +MLS  I PT  
Sbjct: 476 RKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDF 535

Query: 340 TYNT 343
           T+NT
Sbjct: 536 TFNT 539



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 173/328 (52%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++IL     K    +  L LF ++ S+ + P  +T+N +IN  CK+G++S     
Sbjct: 497 PNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDK 556

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L   L   F P  +T+ S++ G   E  I  A A++ ++  FG  P+V TYT+LING C+
Sbjct: 557 LKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCK 616

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +    +AL   +EM     E       D   YS + DG CK   ++ A++LF ++ +  +
Sbjct: 617 SNRIDLALKTRDEMREKGLEL------DVTAYSALIDGFCKRRDMESAQDLFFELLEVGL 670

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ + Y S+I GF   N+   A   + +M++  +  ++ T+  +++ L K G++  AS 
Sbjct: 671 SPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASD 730

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+  G+ PD   ++ L++G C  G++  A+++   M+       V  Y  LI GY 
Sbjct: 731 LYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYF 790

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +   ++ A +L+ EML +G+ P  VTY+
Sbjct: 791 REGNLKEAFTLHDEMLDRGLVPDDVTYD 818



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 179/362 (49%), Gaps = 41/362 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++NI+   L K    D   SL   + + G+ P++ +YN +I   C+ G +     V  
Sbjct: 429 IFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFS 488

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +L     P+ VT++ LI G   +    +A  LF ++ +    P  FT+ T+INGLC+ G
Sbjct: 489 DMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVG 548

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A +  +       E G +  P  +TY++I DG  KEG +D A  ++ +M +  ++P
Sbjct: 549 QMSEARDKLKNFL----EEGFI--PSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSP 602

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +VVTYTSLI GFC +N  + A     EM ++G++ +V  ++ +++  CK   M+ A  L 
Sbjct: 603 NVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLF 662

Query: 257 ELMIQIGVRPDASVYN-----------------------------------TLMDGFCLT 281
             ++++G+ P+  VYN                                   TL+DG    
Sbjct: 663 FELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKE 722

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           GR+  A +L++ M S G + D+ ++ +L+NG C   ++E A  +  EM  K + P+V+ Y
Sbjct: 723 GRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIY 782

Query: 342 NT 343
           NT
Sbjct: 783 NT 784



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 40/344 (11%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS---------------PGFVVLGRI 78
           D+ L+LF ++   GLFP+  TY++LI   C  G +                P    +  +
Sbjct: 342 DSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSL 401

Query: 79  LR-------------------SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           LR                    C   +  T+  ++  LC   ++ EA +L   +   G  
Sbjct: 402 LRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMV 461

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+V +Y  +I G CR G+  +A ++F +M           KP+ +TYS + DG  K+G  
Sbjct: 462 PNVVSYNDMILGHCRKGNMDMASSVFSDM------LARDLKPNVVTYSILIDGNFKKGDS 515

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +KA +LF +M   NI P   T+ ++I G C     +EA+      +++G  P+ +T+N I
Sbjct: 516 EKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSI 575

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++   K G +D A  +   M + GV P+   Y +L++GFC + R++ A +    M   G 
Sbjct: 576 VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGL 635

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             DV +Y  LI+G+CK +++E A  L+ E+L  G+ P  + YN+
Sbjct: 636 ELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNS 679



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 171/330 (51%), Gaps = 9/330 (2%)

Query: 15  PPVCSF-NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P   +F +++  C+A+    +  L L + + + G   +L     L+  +C  G +     
Sbjct: 288 PSEATFTSVIVACVAQGNMVEA-LRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALN 346

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  +I      P+ VT++ LI+G C    I +A+ L+T+++  G  P VF   +L+ G  
Sbjct: 347 LFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYL 406

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +      A  LF+E      + GV    +  TY+ +   LCK G +D+A  L   M ++ 
Sbjct: 407 KAPLWEEASKLFDEAV----DCGVA---NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQG 459

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + P+VV+Y  +I G C   + + A  +F +M+ + ++PNVVT++++++   K G  ++A 
Sbjct: 460 MVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKAL 519

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + M+ + + P    +NT+++G C  G+++ A++   +    G +    +Y  +++G+
Sbjct: 520 DLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGF 579

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K   I+ AL++Y EM   G+ P VVTY +
Sbjct: 580 IKEGNIDSALAVYREMCEFGVSPNVVTYTS 609



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 126/292 (43%), Gaps = 7/292 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D   +N L+N + +  R+         ++     P       L+  L   + I E   L+
Sbjct: 149 DHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLY 208

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            K+   G   D FT   ++    + G    A   F E      E GV  K DA  YS I 
Sbjct: 209 NKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETK----ERGV--KLDAGAYSIII 262

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
             +CK+   +   EL  +MK+    P   T+TS+I       +  EA  L  EM++ G  
Sbjct: 263 QAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKP 322

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            N+V    +M   C  G +D A  L   + + G+ P+   Y+ L++G C +G + +A EL
Sbjct: 323 MNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASEL 382

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +  M+ NG    VF+   L+ GY K    E A  L+ E +  G+   + TYN
Sbjct: 383 YTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGV-ANIFTYN 433



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 144/357 (40%), Gaps = 28/357 (7%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI-GLFPDLYTYNILINCFCKM-- 65
           ++H    P+   +++   L       + L  FKR  +  G    +  Y +L++   +   
Sbjct: 50  QIHQETTPLSQNHVIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPE 109

Query: 66  --------------GRVSPGFVVLGRILRSC-----FTPDAVTFTSLIKGLCAESRIMEA 106
                         G   P  VV    L +C     F  D   F  L+      +RI  A
Sbjct: 110 THGHARKLLNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENA 169

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
              F  +      P V     L+  L R        +L+ +M    G +G     D  T 
Sbjct: 170 IDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMV-LRGIYG-----DHFTV 223

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
             +     KEG V++A+E F + K+  +  D   Y+ +I+  C   + N    L  EM +
Sbjct: 224 HVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKE 283

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G  P+  TF  ++      G M EA RL E MI  G   +  V  +LM G+C  G ++ 
Sbjct: 284 RGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDS 343

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A  LF  +  +G   +  +Y +LI G C +  IE A  LY++M   GI P+V   N+
Sbjct: 344 ALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNS 400



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  + ++  L   L K         L+  + S G+ PD+ T+++L+N  C  G++     
Sbjct: 706 PCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARK 765

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           +L  + R   TP  + + +LI G   E  + EA  L  ++   G  PD  TY  LING
Sbjct: 766 ILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 823


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 168/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++IL     KN   +    +F R+    + P  +TYNI IN  CK+GR S    +
Sbjct: 521 PNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDM 580

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L + +   F P  +T+ S++ G   E  +  A   + ++   G  P+V TYTTLING C+
Sbjct: 581 LKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCK 640

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +T +AL +  EM N   E       D   Y  + DG CK+  ++ A  LF ++ D  +
Sbjct: 641 NNNTDLALKMRNEMRNKGLEL------DIAAYGALIDGFCKKQDIETASWLFSELLDGGL 694

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ V Y SLI G+   N+   A  L   M+ +G+  ++ T+  +++ L K G++  A  
Sbjct: 695 SPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALD 754

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M   G+ PD  +Y  L++G C  G++  A+++   ME +    +V  Y  LI G+ 
Sbjct: 755 LYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHF 814

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ A  L++EML KG+ P   TY+
Sbjct: 815 KAGNLQEAFRLHNEMLDKGLTPNDTTYD 842



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 161/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+N +     +  + D   S+F  +   GL P++ TY+IL++ + K G     F V
Sbjct: 486 PTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYV 545

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R++     P   T+   I GLC   R  EA  +  K    G  P   TY ++++G  +
Sbjct: 546 FDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIK 605

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL  + EM     E GV   P+ ITY+T+ +G CK    D A ++  +M+++ +
Sbjct: 606 EGSVSSALTAYREMC----ESGV--SPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGL 659

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D+  Y +LI GFC   D   A  LF E++D G+ PN V +N +++       M+ A  
Sbjct: 660 ELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALN 719

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+  G+  D   Y TL+DG    GR+  A +L+  M + G + D+  Y +LING C
Sbjct: 720 LQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLC 779

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              ++E A  + +EM    I P V  YN 
Sbjct: 780 GKGQLENAQKILAEMERDSITPNVPIYNA 808



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 171/340 (50%), Gaps = 8/340 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M    PSP  V ++ +L     KN +      L+ ++ +  + P ++  N LI  F 
Sbjct: 372 FDKMNENGPSPNRV-TYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFL 430

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K+        +    + +C   +  T+ SL+  LC E ++ EA  L+ K+   G  P   
Sbjct: 431 KVESREEASKLFDEAV-ACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKV 489

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y ++I G CR G+  +A ++F +M +         KP+ ITYS + DG  K G  + A 
Sbjct: 490 SYNSMILGHCRQGNLDMAASVFSDMLDCG------LKPNVITYSILMDGYFKNGDTEYAF 543

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +F +M DENI P   TY   I G C     +EA+ +  + +++G  P  +T+N IM+  
Sbjct: 544 YVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGF 603

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G +  A      M + GV P+   Y TL++GFC     + A ++   M + G   D+
Sbjct: 604 IKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDI 663

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +YG LI+G+CK ++IE A  L+SE+L  G+ P  V YN+
Sbjct: 664 AAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNS 703



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 167/324 (51%), Gaps = 7/324 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           + +I+     K+ + +     F    S G+  D   Y+I+I  FCK   V     +L  +
Sbjct: 246 TVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDM 305

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
               + P   TFTS+I     +  ++EA  L  ++ + G + +V   TTL+ G C+    
Sbjct: 306 RDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKL 365

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
           + AL  F++M N NG       P+ +TY+ + +  CK G + KA +L+ +MK++NI P V
Sbjct: 366 VSALEFFDKM-NENGP-----SPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTV 419

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
               SLIRGF       EA  LF E +   +  N+ T+N +++ LCK GKM EA+ L + 
Sbjct: 420 FIVNSLIRGFLKVESREEASKLFDEAVACDI-ANIFTYNSLLSWLCKEGKMSEATTLWQK 478

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+  G+ P    YN+++ G C  G ++ A  +F  M   G   +V +Y IL++GY KN +
Sbjct: 479 MLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGD 538

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
            E A  ++  M+ + I P+  TYN
Sbjct: 539 TEYAFYVFDRMVDENIVPSDFTYN 562



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 150/293 (51%), Gaps = 6/293 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           +++TYN L++  CK G++S    +  ++L     P  V++ S+I G C +  +  AA++F
Sbjct: 452 NIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVF 511

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
           + +   G KP+V TY+ L++G  + G T  A  +F+ M + N        P   TY+   
Sbjct: 512 SDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDEN------IVPSDFTYNIKI 565

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +GLCK G   +A+++  K  ++   P  +TY S++ GF      + A   + EM + GV 
Sbjct: 566 NGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVS 625

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PNV+T+  ++N  CKN   D A ++   M   G+  D + Y  L+DGFC    +  A  L
Sbjct: 626 PNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWL 685

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           F  +   G   +   Y  LI+GY     +E AL+L   ML +GI   + TY T
Sbjct: 686 FSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTT 738



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 165/355 (46%), Gaps = 28/355 (7%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
             +++I+     KN   +    L K +   G  P   T+  +I    K G +     +  
Sbjct: 279 AAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKD 338

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++      + V  T+L+KG C + +++ A   F K+   G  P+  TY  LI   C+ G
Sbjct: 339 EMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNG 398

Query: 137 HTIVALNLFEEMANGN-------------GEFGVVCKPDA---------------ITYST 168
           +   A +L+ +M N N             G   V  + +A                TY++
Sbjct: 399 NMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDIANIFTYNS 458

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +   LCKEG + +A  L+ KM D+ + P  V+Y S+I G C   + + A  +F +M+D G
Sbjct: 459 LLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCG 518

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           ++PNV+T++++M+   KNG  + A  + + M+   + P    YN  ++G C  GR + A+
Sbjct: 519 LKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQ 578

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++       G +    +Y  +++G+ K   +  AL+ Y EM   G+ P V+TY T
Sbjct: 579 DMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTT 633



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 130/263 (49%), Gaps = 7/263 (2%)

Query: 16  PVC-SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           PVC ++N +     K     + L+ ++ +   G+ P++ TY  LIN FCK         +
Sbjct: 591 PVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKM 650

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       D   + +LI G C +  I  A+ LF++L   G  P+   Y +LI+G   
Sbjct: 651 RNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRN 710

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   ALNL + M    GE G+ C  D  TY+T+ DGL KEG +  A +L+ +M  + I
Sbjct: 711 LNNMEAALNLQKRML---GE-GISC--DLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGI 764

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++ YT LI G C       A+ +  EM    + PNV  +N ++    K G + EA R
Sbjct: 765 IPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFR 824

Query: 255 LLELMIQIGVRPDASVYNTLMDG 277
           L   M+  G+ P+ + Y+ L++G
Sbjct: 825 LHNEMLDKGLTPNDTTYDILING 847



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L     KN + D  L +   + + GL  D+  Y  LI+ FCK   +     +
Sbjct: 626 PNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWL 685

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L    +P++V + SLI G    + +  A  L  ++   G   D+ TYTTLI+GL +
Sbjct: 686 FSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLK 745

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  ++AL+L+ EM+      G++  PD I Y+ + +GLC +G ++ A+++  +M+ ++I
Sbjct: 746 EGRLVLALDLYSEMSAK----GII--PDIIIYTVLINGLCGKGQLENAQKILAEMERDSI 799

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            P+V  Y +LI G   A +  EA  L  EM+D+G+ PN  T+++++N   K G
Sbjct: 800 TPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGG 852



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 125/293 (42%), Gaps = 41/293 (13%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           D+  YN L+N + K  +++       R++ S   P       L+  L     I EA  ++
Sbjct: 173 DIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVY 232

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
            K+   G           ++G C T H ++  NL                          
Sbjct: 233 EKMVLKG-----------VHGDCFTVHIMMRANL-------------------------- 255

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
               K+   ++AK+ FL+ K   +  D   Y+ +I+ FC   D   A  L  +M D+G  
Sbjct: 256 ----KDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWV 311

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P+  TF  ++    K G M EA RL + M+  GV+ +  V  TL+ G+C   ++  A E 
Sbjct: 312 PSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEF 371

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           F  M  NG   +  +Y +LI   CKN  +  A  LY++M +K I PTV   N+
Sbjct: 372 FDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNS 424



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++  L   L K       L L+  +++ G+ PD+  Y +LIN  C  G++     +L  +
Sbjct: 735 TYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEM 794

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            R   TP+   + +LI G      + EA  L  ++   G  P+  TY  LING  + G++
Sbjct: 795 ERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGGNS 854

Query: 139 IVALNLFEEMANGNG 153
            +   L  +  +G G
Sbjct: 855 ALKSLLSLKFKDGKG 869


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 6/319 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++ +L   L KN        +++++   G+FP+L+TYN ++N  CK GR    F V   +
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                + + VT+ +LI GLC E +  EA  +  ++++ G  P++ TY TLI+G C     
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKL 354

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL+L  ++ +          P  +TY+ +  G CK+G    A ++  +M++  I P  
Sbjct: 355 GKALSLCRDLKSRG------LSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSK 408

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTYT LI  F  +++  +A  L   M + G+ P+V T++V+++  C  G+M+EASRL + 
Sbjct: 409 VTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKS 468

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M++    P+  +YNT++ G+C  G   RA  LF  ME      +V SY  +I   CK ++
Sbjct: 469 MVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERK 528

Query: 319 IEGALSLYSEMLSKGIRPT 337
            + A  L  +M+  GI P+
Sbjct: 529 SKEAEGLVEKMIDSGIGPS 547



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 171/335 (51%), Gaps = 41/335 (12%)

Query: 44  NSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103
           + I +  D+Y++ I+I   C+ G +   F +L  +    F+P+ V +T+LI G C +  I
Sbjct: 155 SKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEI 214

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGL------------------------------- 132
            +A  LF ++  FG   + +TYT LI+GL                               
Sbjct: 215 EKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCV 274

Query: 133 ----CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
               C+ G T  A  +F+EM     E GV C  + +TY+T+  GLC+E   ++A E+  +
Sbjct: 275 MNQLCKDGRTKDAFKVFDEMR----ERGVSC--NIVTYNTLIGGLCREMKANEANEVMDQ 328

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           MK + INP+++TY +LI GFC      +A  L  ++  +G+ P++VT+N++++  CK G 
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGD 388

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
              A ++++ M + G++P    Y  L+D F  +  + +A +L  SME  G   DV +Y +
Sbjct: 389 TSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSV 448

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LI+G+C    +  A  L+  M+ K   P  V YNT
Sbjct: 449 LIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNT 483



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 171/341 (50%), Gaps = 10/341 (2%)

Query: 4   FDYMLRMHP---SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           FD ++ +     SP  V    ++ GC  K +  +    LF  +   GL  + +TY +LI+
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGCCKKGE-IEKAKDLFFEMGKFGLVANEWTYTVLIH 241

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K G    GF +  ++      P+  T+  ++  LC + R  +A  +F ++R  G   
Sbjct: 242 GLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSC 301

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY TLI GLCR      A  + ++M +          P+ ITY+T+ DG C    + 
Sbjct: 302 NIVTYNTLIGGLCREMKANEANEVMDQMKSDG------INPNLITYNTLIDGFCGVRKLG 355

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA  L   +K   ++P +VTY  L+ GFC   D + A  +  EM ++G++P+ VT+ +++
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILI 415

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   ++  M++A +L   M ++G+ PD   Y+ L+ GFC+ GR+N A  LF SM      
Sbjct: 416 DTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFE 475

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +   Y  ++ GYCK      AL L+ EM  K + P V +Y
Sbjct: 476 PNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASY 516



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M R       + ++N L G L +    +    +  ++ S G+ P+L TYN LI+
Sbjct: 288 FKVFDEM-RERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLID 346

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FC + ++     +   +     +P  VT+  L+ G C +     A  +  ++   G KP
Sbjct: 347 GFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKP 406

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
              TYT LI+   R+ +   A+ L   M     E G+   PD  TYS +  G C +G ++
Sbjct: 407 SKVTYTILIDTFARSDNMEKAIQLRSSME----ELGLT--PDVHTYSVLIHGFCIKGRMN 460

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A  LF  M ++   P+ V Y +++ G+C       A  LF EM ++ + PNV ++  ++
Sbjct: 461 EASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMI 520

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             LCK  K  EA  L+E MI  G+ P  S+ N +
Sbjct: 521 EVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLI 554



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 1/173 (0%)

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +  G  +  F   +  L    + E        Y  +I  +  +   + +   F EM+D+G
Sbjct: 65  VISGKIQSQFFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKG 124

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
             P    FN ++  +  +   ++         +I V  D   +  ++ G C  G + ++ 
Sbjct: 125 FVPGSNCFNNLLTFVVGSSSFNQWWCFFN-ESKIKVVLDVYSFGIVIKGCCEAGEIEKSF 183

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +L V +   G   +V  Y  LI+G CK  EIE A  L+ EM   G+     TY
Sbjct: 184 DLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTY 236


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 188/401 (46%), Gaps = 79/401 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +   N +   L K K  D   S+ +++   G+ PDL+TY+++I+  CK   +     V
Sbjct: 167 PKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERV 226

Query: 75  LGRILRSCFTPDAVTFTSLIKG-----------------------------------LCA 99
           L +++ +   P+++T+ SLI G                                   L  
Sbjct: 227 LEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFK 286

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTT-------------------------------- 127
             R  EA  +F  +   G KPD+ +Y+T                                
Sbjct: 287 HGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNK 346

Query: 128 -----LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
                LIN   R G    A+ +FE+M N     G++  PD +T++T+   LC+ G +D A
Sbjct: 347 HVFNILINAYARCGMMDKAMLIFEDMQNK----GMI--PDTVTFATVISSLCRIGRLDDA 400

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-QPNVVTFNVIMN 241
              F  M D  + P    Y  LI+G C   +  +AK L  EMM++ +  P V  F+ I+N
Sbjct: 401 LHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIIN 460

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G++ E   ++++M+Q G RP+   +N+LM+G+CL G +  A  L  +M S G   
Sbjct: 461 NLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEP 520

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + + YG L++GYCKN  I+ AL+++ +ML KG++PT V Y+
Sbjct: 521 NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYS 561



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 169/342 (49%), Gaps = 6/342 (1%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           CIFD M+   P P  +    +L G   A +     V ++F  + + G+ P+ + +NILIN
Sbjct: 295 CIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILIN 354

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            + + G +    ++   +      PD VTF ++I  LC   R+ +A   F  +   G  P
Sbjct: 355 AYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPP 414

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               Y  LI G C  G  + A  L  EM N +     +  P    +S+I + LCKEG V 
Sbjct: 415 SEAVYGCLIQGCCNHGELVKAKELISEMMNKD-----IPPPGVKYFSSIINNLCKEGRVA 469

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           + K++   M      P+VVT+ SL+ G+C   +  EA  L   M   G++PN   +  ++
Sbjct: 470 EGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLV 529

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CKNG++D+A  +   M+  GV+P + +Y+ ++ G     R   AK++F  M  +G  
Sbjct: 530 DGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTT 589

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             + +YG+++ G C+N   + A  L  ++ +  ++  ++T+N
Sbjct: 590 VSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 631



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 156/296 (52%), Gaps = 9/296 (3%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P ++TYNILI+C+ ++ R   G  ++GR+L++   PD  ++ SLI G   +  + +A  L
Sbjct: 98  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCL 156

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F ++   G  P +    ++I  LC+      A ++ ++M +          PD  TYS I
Sbjct: 157 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG------IAPDLFTYSLI 210

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DGLCK   +DKA+ +  +M +    P+ +TY SLI G+  +  WNE+  +F +M   GV
Sbjct: 211 IDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGV 270

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR--VNRA 287
            P V   N  ++ L K+G+ +EA  + + M+  G +PD   Y+T++ G+       +   
Sbjct: 271 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADV 330

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +F  M + G   +   + ILIN Y +   ++ A+ ++ +M +KG+ P  VT+ T
Sbjct: 331 HNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 386



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 169/366 (46%), Gaps = 44/366 (12%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SPP + ++NIL  C  +    D  L++  RL   GL PD ++Y+ LI  F K G V    
Sbjct: 96  SPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAH 154

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   ++     P  +   S+IK LC    + +A ++  K+   G  PD+FTY+ +I+GL
Sbjct: 155 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 214

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG-------------------- 172
           C++     A  + E+M           +P++ITY+++  G                    
Sbjct: 215 CKSKAMDKAERVLEQMVEAG------TRPNSITYNSLIHGYSISGMWNESVRVFKQMSSC 268

Query: 173 ---------------LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND--WN 215
                          L K G  ++AK +F  M  +   PD+++Y++++ G+  A D    
Sbjct: 269 GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLA 328

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           +   +F  M+ +G+ PN   FN+++N   + G MD+A  + E M   G+ PD   + T++
Sbjct: 329 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 388

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
              C  GR++ A   F  M   G       YG LI G C + E+  A  L SEM++K I 
Sbjct: 389 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIP 448

Query: 336 PTVVTY 341
           P  V Y
Sbjct: 449 PPGVKY 454



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 168/367 (45%), Gaps = 43/367 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ ML    +P     FNIL    A+    D  + +F+ + + G+ PD  T+  +I+  
Sbjct: 333 IFNLMLTKGIAPNKHV-FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 391

Query: 63  CKMGR---------------VSPGFVVLGRILRSCFT---------------------PD 86
           C++GR               V P   V G +++ C                       P 
Sbjct: 392 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 451

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
              F+S+I  LC E R+ E   +   +   G +P+V T+ +L+ G C  G+   A  L +
Sbjct: 452 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 511

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
            MA+      +  +P+   Y T+ DG CK G +D A  +F  M  + + P  V Y+ ++ 
Sbjct: 512 AMAS------IGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH 565

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G   A     AK +F EM++ G   ++ T+ V++  LC+N   DEA+ LLE +  + V+ 
Sbjct: 566 GLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 625

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   +N ++      GR   AKELF ++ + G + ++ +Y ++I    K +  E A +L+
Sbjct: 626 DIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLF 685

Query: 327 SEMLSKG 333
             +   G
Sbjct: 686 ISVEKSG 692



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 130/253 (51%), Gaps = 6/253 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P +  ++ +IN  CK GRV+ G  ++  ++++   P+ VTF SL++G C    + EA AL
Sbjct: 450 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 509

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
              + + G +P+ + Y TL++G C+ G    AL +F +M +         KP ++ YS I
Sbjct: 510 LDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG------VKPTSVLYSII 563

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GL +      AK++F +M +      + TY  ++ G C  N  +EA  L  ++    V
Sbjct: 564 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNV 623

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           + +++TFN++++ + K G+  EA  L + +   G+ P+   Y+ ++           A  
Sbjct: 624 KFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADN 683

Query: 290 LFVSMESNGCMRD 302
           LF+S+E +G   D
Sbjct: 684 LFISVEKSGHASD 696



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 130/308 (42%), Gaps = 6/308 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V  F+ +   L K         +   +   G  P++ T+N L+  +C +G +   F 
Sbjct: 449 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 508

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      P+   + +L+ G C   RI +A  +F  +   G KP    Y+ +++GL 
Sbjct: 509 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLF 568

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +   T  A  +F EM        +       TY  +  GLC+    D+A  L  K+   N
Sbjct: 569 QARRTTAAKKMFHEMIESGTTVSIH------TYGVVLGGLCRNNCTDEANMLLEKLFAMN 622

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  D++T+  +I          EAK LF  +   G+ PN+ T+++++  L K    +EA 
Sbjct: 623 VKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEAD 682

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L   + + G   D+ + N ++        V +A      +  N    +  +  +L + +
Sbjct: 683 NLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLF 742

Query: 314 CKNKEIEG 321
            +   I+G
Sbjct: 743 SREGMIKG 750


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 148/294 (50%), Gaps = 5/294 (1%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P+L  YN +I+   K G       +   +L    +PD +TF +LI      +R  E   +
Sbjct: 187 PNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRI 246

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F ++   G   D  TY TLI   CR G   +   L E MA  +G      +P  ITYST+
Sbjct: 247 FAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSG-----IEPSVITYSTM 301

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DG  K G   +A  LF +M+++N+ PD + Y +++       +++EA  +   M + G 
Sbjct: 302 IDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGF 361

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++VT+N +++   K GK  EA  LLE M Q G  P+   Y+ L+D +C  G    A  
Sbjct: 362 AKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMA 421

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LF  ++  G   DV  Y  L++G CKN   + AL+L  EM   GIRP V+TYN+
Sbjct: 422 LFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNS 475



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 152/303 (50%), Gaps = 7/303 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N +    +K   Y T L +F+ +   G+ PD  T+N LI+   +  R      +
Sbjct: 187 PNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRI 246

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF-TKLRAFGCKPDVFTYTTLINGLC 133
              +       D VT+ +LI   C   ++   AAL  T  ++ G +P V TY+T+I+G  
Sbjct: 247 FAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYA 306

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ LF+EM N N E      PD I Y+T+ D   + G  D+A  +   M++  
Sbjct: 307 KLGLAHEAIALFQEMRNQNVE------PDGICYNTMVDIHARLGNFDEAHSIRRAMEEAG 360

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              D+VTY +L+  +     + EA  L  EM  +G  PN++T++ +++  CK+G   +A 
Sbjct: 361 FAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAM 420

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + + + G++PD  +Y+TL+DG C  G  + A  L   M  NG   +V +Y  L++ Y
Sbjct: 421 ALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAY 480

Query: 314 CKN 316
            + 
Sbjct: 481 GRQ 483



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 46/308 (14%)

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           ++VL + LRS +  D VT +++I  L    R   A  +F +    G   +VF Y++LI  
Sbjct: 108 WMVLQQNLRSQW--DKVT-STIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICA 164

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
             R+G    A+ +FE M        VVCKP+ + Y+ + D   K G    A  +F +M +
Sbjct: 165 YGRSGKLAKAVEIFEAMK-------VVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLE 217

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + ++PD +T+ +LI     AN W E   +F EM ++G+  + VT+N ++   C+ G+M  
Sbjct: 218 QGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHL 277

Query: 252 ASRLLELMIQ-IGVRPDASVYNTLMDGFCLTGRVNRAKELFV------------------ 292
            + L+E M +  G+ P    Y+T++DG+   G  + A  LF                   
Sbjct: 278 GAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMV 337

Query: 293 -----------------SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
                            +ME  G  +D+ +Y  L++ Y K  +   A+SL  EM  +G  
Sbjct: 338 DIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGAS 397

Query: 336 PTVVTYNT 343
           P ++TY+ 
Sbjct: 398 PNILTYSA 405



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 151/350 (43%), Gaps = 51/350 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +    AK       ++LF+ + +  + PD   YN +++   ++G       +
Sbjct: 293 PSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSI 352

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  + F  D VT+ +L+     + +  EA +L  +++  G  P++ TY+ LI+  C+
Sbjct: 353 RRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCK 412

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ LF+++           +PD + YST+ DG CK G  D+A  L  +M D  I
Sbjct: 413 HGFHRDAMALFQDVKKAG------LQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGI 466

Query: 195 NPDVVTYTSLIRGF----------------------------CYANDWNE---------- 216
            P+V+TY SL+  +                               +D             
Sbjct: 467 RPNVITYNSLLDAYGRQCLMVRKTFPKLRFFLLPRVTMLLKPSMQDDQQSLVDPKQKQAL 526

Query: 217 ---AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
              A  +F EM   GV+PNVVTF+ I+N       +++AS LLE M     R     +  
Sbjct: 527 VLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASNLLEAMRVFDGRVYGVTHGL 586

Query: 274 LMDGFCLTGRVNR-AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           LM GF +  RV R A+ LF  + + G    V  Y  L +     ++ + A
Sbjct: 587 LM-GFRI--RVWRDAETLFNELTTLGHNTAVAFYNALTDVLWHFEQAQAA 633


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 167/323 (51%), Gaps = 9/323 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F  L   L K         L   +++ GL P++ TY  +I+ +CK G+V     VL  + 
Sbjct: 315 FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 374

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R    P+A T+ SL+ GL  + ++ +A AL TK++  G  P+V TYTTL+ G C      
Sbjct: 375 RDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFD 434

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  LFE M   NG      KPD   Y+ +TD LCK G  ++A    ++   + +    V
Sbjct: 435 NAFRLFE-MMEQNG-----LKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGVALTKV 485

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            YT+LI GF  A + + A  L   M+D+G  P+  T++V+++ LCK  +++EA  +L+ M
Sbjct: 486 YYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM 545

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              G++     Y  L+D     G+ + AK ++  M S+G      +Y + IN YCK   +
Sbjct: 546 SLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRL 605

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
           E A  L  +M  +G+ P VVTYN
Sbjct: 606 EDAEDLILKMEREGVAPDVVTYN 628



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 161/305 (52%), Gaps = 7/305 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           LF  +  +G   + Y+Y ILI   C    V    V+   + R   +P+   FT LI GLC
Sbjct: 125 LFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLC 184

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
              R+ +A  LF  +   G  P V TY  +I G  + G    AL + +E+   NG     
Sbjct: 185 KSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKI-KELMEKNG----- 238

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C PD  TY+T+  GLC +   ++A+EL      E   P VVT+T+LI G+C A  +++A 
Sbjct: 239 CHPDDWTYNTLIYGLCDQK-TEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDAL 297

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            +  +MM    + ++  F  ++N L K  ++ EA  LL  +   G+ P+   Y +++DG+
Sbjct: 298 RMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGY 357

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C +G+V+ A E+   ME +GC  + ++Y  L+ G  K+K++  A++L ++M   GI P V
Sbjct: 358 CKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNV 417

Query: 339 VTYNT 343
           +TY T
Sbjct: 418 ITYTT 422



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 163/362 (45%), Gaps = 41/362 (11%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           P C +N     LA+    + +  ++ +L   GL PD  TYN +I  +CK G ++      
Sbjct: 33  PKC-YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYF 91

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             +L     P+  T  +L+ G C    + +A  LF  +   GC+ + ++YT LI GLC  
Sbjct: 92  RLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDA 151

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                AL LF  M          C P+   ++ +  GLCK G V  A+ LF  M    + 
Sbjct: 152 KCVRKALVLFLMMKRDG------CSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVV 205

Query: 196 PDVVTYTSLIRGF--------------------CYANDW--------------NEAKCLF 221
           P V+TY ++I G+                    C+ +DW               EA+ L 
Sbjct: 206 PSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELL 265

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
              + +G  P VVTF  ++N  C   K D+A R+   M+    + D  V+  L++     
Sbjct: 266 NNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 325

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            R+  AKEL   + +NG + +V +Y  +I+GYCK+ +++ AL +   M   G +P   TY
Sbjct: 326 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTY 385

Query: 342 NT 343
           N+
Sbjct: 386 NS 387



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 161/337 (47%), Gaps = 10/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M++     P V +F  L   L K+        LF  +   G+ P + TYN +I  + K+G
Sbjct: 163 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 222

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R++    +   + ++   PD  T+ +LI GLC + +  EA  L       G  P V T+T
Sbjct: 223 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFT 281

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LING C       AL +  +M +        CK D   +  + + L K+  + +AKEL 
Sbjct: 282 NLINGYCMAEKFDDALRMKNKMMSSK------CKLDLQVFGKLINSLIKKDRLKEAKELL 335

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            ++    + P+V+TYTS+I G+C +   + A  +   M   G QPN  T+N +M  L K+
Sbjct: 336 NEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKD 395

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
            K+ +A  LL  M + G+ P+   Y TL+ G C     + A  LF  ME NG   D  +Y
Sbjct: 396 KKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAY 455

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L +  CK    E A   YS ++ KG+  T V Y T
Sbjct: 456 AVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTT 489



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 162/375 (43%), Gaps = 54/375 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF-- 72
           P V ++  L         +D    LF+ +   GL PD + Y +L +  CK GR    +  
Sbjct: 415 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 474

Query: 73  ------------------------------VVLGRILRSCFTPDAVTFTSLIKGLCAESR 102
                                          ++ R++    TPD+ T++ L+  LC + R
Sbjct: 475 IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 534

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + EA  +  ++   G K  +F YT LI+ + R G    A  ++ EM +         KP 
Sbjct: 535 LNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH------KPS 588

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
           A TY+   +  CKEG ++ A++L LKM+ E + PDVVTY  LI G  +    + A     
Sbjct: 589 ATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLK 648

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNG----------------KMDEASRLLELMIQIGVRP 266
            M+    +PN  T+ +++  L K                  ++D   +LLE M++ G+ P
Sbjct: 649 RMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNP 708

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
             + Y++L+ GFC  GR+  A  L   M   G   +   Y +LI   C  K  E ALS  
Sbjct: 709 TVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFV 768

Query: 327 SEMLSKGIRPTVVTY 341
           S M   G +P + +Y
Sbjct: 769 SIMSECGFQPQLESY 783



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 141/331 (42%), Gaps = 22/331 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++++L   L K K  +  L +  +++  G+   ++ Y ILI+   + G+      +
Sbjct: 517 PDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRM 576

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  S   P A T+T  I   C E R+ +A  L  K+   G  PDV TY  LI+G   
Sbjct: 577 YNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGH 636

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITY----------------STITDGLCKEGF 178
            G+   A +  + M       G  C+P+  TY                S  T G+     
Sbjct: 637 MGYIDRAFSTLKRMV------GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIE 690

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
           +D   +L  +M    +NP V TY+SLI GFC A    EA  L   M  +G+ PN   + +
Sbjct: 691 LDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTL 750

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++   C     ++A   + +M + G +P    Y  L+ G C  G   + K LF  +   G
Sbjct: 751 LIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 810

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
              D  ++ IL +G  K   ++    + S M
Sbjct: 811 YNHDEVAWKILNDGLLKAGYVDICFQMLSIM 841



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 139/317 (43%), Gaps = 17/317 (5%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++ IL   + +   +D    ++  + S G  P   TY + IN +CK GR+     ++ ++
Sbjct: 556 AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKM 615

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG-- 136
            R    PD VT+  LI G      I  A +   ++    C+P+ +TY  L+  L +    
Sbjct: 616 EREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLA 675

Query: 137 ----------HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
                       ++ L++  ++     + G+   P   TYS++  G CK G +++A  L 
Sbjct: 676 YVRSVDTSGMWNLIELDITWQLLERMVKHGL--NPTVTTYSSLIAGFCKAGRLEEACLLL 733

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M  + ++P+   YT LI+  C    + +A      M + G QP + ++ +++  LC  
Sbjct: 734 DHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNE 793

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G  ++   L   ++++G   D   +  L DG    G V+   ++   ME   C     +Y
Sbjct: 794 GDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTY 853

Query: 307 GILINGYCKNKEIEGAL 323
            ++ N   K  E+  +L
Sbjct: 854 ALVTN---KMHEVSSSL 867


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 148/294 (50%), Gaps = 5/294 (1%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P+L  YN +I+   K G       +   +L    +PD +TF +LI      +R  E   +
Sbjct: 188 PNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRI 247

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F ++   G   D  TY TLI   CR G   +   L E MA  +G      +P  ITYST+
Sbjct: 248 FAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSG-----IEPSVITYSTM 302

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            DG  K G   +A  LF +M+++N+ PD + Y +++       +++EA  +   M + G 
Sbjct: 303 IDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGF 362

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++VT+N +++   K GK  EA  LLE M Q G  P+   Y+ L+D +C  G    A  
Sbjct: 363 AKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMA 422

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LF  ++  G   DV  Y  L++G CKN   + AL+L  EM   GIRP V+TYN+
Sbjct: 423 LFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNS 476



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 152/303 (50%), Gaps = 7/303 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N +    +K   Y T L +F+ +   G+ PD  T+N LI+   +  R      +
Sbjct: 188 PNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRI 247

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF-TKLRAFGCKPDVFTYTTLINGLC 133
              +       D VT+ +LI   C   ++   AAL  T  ++ G +P V TY+T+I+G  
Sbjct: 248 FAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYA 307

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ LF+EM N N E      PD I Y+T+ D   + G  D+A  +   M++  
Sbjct: 308 KLGLAHEAIALFQEMRNQNVE------PDGICYNTMVDIHARLGNFDEAHSIRRAMEEAG 361

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              D+VTY +L+  +     + EA  L  EM  +G  PN++T++ +++  CK+G   +A 
Sbjct: 362 FAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAM 421

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + + + G++PD  +Y+TL+DG C  G  + A  L   M  NG   +V +Y  L++ Y
Sbjct: 422 ALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAY 481

Query: 314 CKN 316
            + 
Sbjct: 482 GRQ 484



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 46/308 (14%)

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           ++VL + LRS +  D VT +++I  L    R   A  +F +    G   +VF Y++LI  
Sbjct: 109 WMVLQQNLRSQW--DKVT-STIISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICA 165

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
             R+G    A+ +FE M        VVCKP+ + Y+ + D   K G    A  +F +M +
Sbjct: 166 YGRSGKLAKAVEIFEAMK-------VVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLE 218

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           + ++PD +T+ +LI     AN W E   +F EM ++G+  + VT+N ++   C+ G+M  
Sbjct: 219 QGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHL 278

Query: 252 ASRLLELMIQ-IGVRPDASVYNTLMDGFCLTGRVNRAKELFV------------------ 292
            + L+E M +  G+ P    Y+T++DG+   G  + A  LF                   
Sbjct: 279 GAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMV 338

Query: 293 -----------------SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
                            +ME  G  +D+ +Y  L++ Y K  +   A+SL  EM  +G  
Sbjct: 339 DIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGAS 398

Query: 336 PTVVTYNT 343
           P ++TY+ 
Sbjct: 399 PNILTYSA 406



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 150/339 (44%), Gaps = 51/339 (15%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +    AK       ++LF+ + +  + PD   YN +++   ++G       +
Sbjct: 294 PSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSI 353

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  + F  D VT+ +L+     + +  EA +L  +++  G  P++ TY+ LI+  C+
Sbjct: 354 RRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCK 413

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ LF+++           +PD + YST+ DG CK G  D+A  L  +M D  I
Sbjct: 414 HGFHRDAMALFQDVKKAG------LQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGI 467

Query: 195 NPDVVTYTSLIRGFCY--------------------------ANDWNE------------ 216
            P+V+TY SL+  +                            + D+++            
Sbjct: 468 RPNVITYNSLLDAYGRQCLMVRKNFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQAL 527

Query: 217 ---AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
              A  +F EM   GV+PNVVTF+ I+N       +++AS LLE M     R     +  
Sbjct: 528 VLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASSLLEAMRVFDGRVYGVTHGL 587

Query: 274 LMDGFCLTGRVNR-AKELFVSMESNGCMRDVFSYGILIN 311
           LM GF +  RV R A+ LF  + + G    V  Y  L +
Sbjct: 588 LM-GFRI--RVWRDAETLFNELTTLGHNTAVAFYNALTD 623


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 188/401 (46%), Gaps = 79/401 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +   N +   L K K  D   S+ +++   G+ PDL+TY+++I+  CK   +     V
Sbjct: 243 PKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERV 302

Query: 75  LGRILRSCFTPDAVTFTSLIKG-----------------------------------LCA 99
           L +++ +   P+++T+ SLI G                                   L  
Sbjct: 303 LEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFK 362

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTT-------------------------------- 127
             R  EA  +F  +   G KPD+ +Y+T                                
Sbjct: 363 HGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNK 422

Query: 128 -----LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
                LIN   R G    A+ +FE+M N     G++  PD +T++T+   LC+ G +D A
Sbjct: 423 HVFNILINAYARCGMMDKAMLIFEDMQNK----GMI--PDTVTFATVISSLCRIGRLDDA 476

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-QPNVVTFNVIMN 241
              F  M D  + P    Y  LI+G C   +  +AK L  EMM++ +  P V  F+ I+N
Sbjct: 477 LHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIIN 536

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK G++ E   ++++M+Q G RP+   +N+LM+G+CL G +  A  L  +M S G   
Sbjct: 537 NLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEP 596

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + + YG L++GYCKN  I+ AL+++ +ML KG++PT V Y+
Sbjct: 597 NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYS 637



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 169/342 (49%), Gaps = 6/342 (1%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           CIFD M+   P P  +    +L G   A +     V ++F  + + G+ P+ + +NILIN
Sbjct: 371 CIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILIN 430

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            + + G +    ++   +      PD VTF ++I  LC   R+ +A   F  +   G  P
Sbjct: 431 AYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPP 490

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               Y  LI G C  G  + A  L  EM N +     +  P    +S+I + LCKEG V 
Sbjct: 491 SEAVYGCLIQGCCNHGELVKAKELISEMMNKD-----IPPPGVKYFSSIINNLCKEGRVA 545

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           + K++   M      P+VVT+ SL+ G+C   +  EA  L   M   G++PN   +  ++
Sbjct: 546 EGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLV 605

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CKNG++D+A  +   M+  GV+P + +Y+ ++ G     R   AK++F  M  +G  
Sbjct: 606 DGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTT 665

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             + +YG+++ G C+N   + A  L  ++ +  ++  ++T+N
Sbjct: 666 VSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 707



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 174/348 (50%), Gaps = 28/348 (8%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDT-------VLSLFKRLNSIG----LFPDLYTYNILINC 61
           +P P  + N +   LA+              + LFKR++         P ++TYNILI+C
Sbjct: 126 APVPARALNGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDC 185

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           + ++ R   G  ++GR+L++   PD  ++ SLI G   +  + +A  LF ++   G  P 
Sbjct: 186 YRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPK 244

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           +    ++I  LC+      A ++ ++M +          PD  TYS I DGLCK   +DK
Sbjct: 245 ILICNSIIKELCKMKEMDKAESIVQKMVDSG------IAPDLFTYSLIIDGLCKSKAMDK 298

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+ +  +M +    P+ +TY SLI G+  +  WNE+  +F +M   GV P V   N  ++
Sbjct: 299 AERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIH 358

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF------CLTGRVNRAKELFVSME 295
            L K+G+ +EA  + + M+  G +PD   Y+T++ G+      CL    N    +F  M 
Sbjct: 359 ALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHN----IFNLML 414

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + G   +   + ILIN Y +   ++ A+ ++ +M +KG+ P  VT+ T
Sbjct: 415 TKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 462



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 169/366 (46%), Gaps = 44/366 (12%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SPP + ++NIL  C  +    D  L++  RL   GL PD ++Y+ LI  F K G V    
Sbjct: 172 SPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAH 230

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   ++     P  +   S+IK LC    + +A ++  K+   G  PD+FTY+ +I+GL
Sbjct: 231 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 290

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG-------------------- 172
           C++     A  + E+M           +P++ITY+++  G                    
Sbjct: 291 CKSKAMDKAERVLEQMVEAG------TRPNSITYNSLIHGYSISGMWNESVRVFKQMSSC 344

Query: 173 ---------------LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND--WN 215
                          L K G  ++AK +F  M  +   PD+++Y++++ G+  A D    
Sbjct: 345 GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLA 404

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           +   +F  M+ +G+ PN   FN+++N   + G MD+A  + E M   G+ PD   + T++
Sbjct: 405 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 464

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
              C  GR++ A   F  M   G       YG LI G C + E+  A  L SEM++K I 
Sbjct: 465 SSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIP 524

Query: 336 PTVVTY 341
           P  V Y
Sbjct: 525 PPGVKY 530



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 168/367 (45%), Gaps = 43/367 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ ML    +P     FNIL    A+    D  + +F+ + + G+ PD  T+  +I+  
Sbjct: 409 IFNLMLTKGIAPNKHV-FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 467

Query: 63  CKMGR---------------VSPGFVVLGRILRSCFT---------------------PD 86
           C++GR               V P   V G +++ C                       P 
Sbjct: 468 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 527

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
              F+S+I  LC E R+ E   +   +   G +P+V T+ +L+ G C  G+   A  L +
Sbjct: 528 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 587

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
            MA+      +  +P+   Y T+ DG CK G +D A  +F  M  + + P  V Y+ ++ 
Sbjct: 588 AMAS------IGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH 641

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G   A     AK +F EM++ G   ++ T+ V++  LC+N   DEA+ LLE +  + V+ 
Sbjct: 642 GLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 701

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   +N ++      GR   AKELF ++ + G + ++ +Y ++I    K +  E A +L+
Sbjct: 702 DIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLF 761

Query: 327 SEMLSKG 333
             +   G
Sbjct: 762 ISVEKSG 768



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 6/253 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P +  ++ +IN  CK GRV+ G  ++  ++++   P+ VTF SL++G C    + EA AL
Sbjct: 526 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 585

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
              + + G +P+ + Y TL++G C+ G    AL +F +M +     GV  KP ++ YS I
Sbjct: 586 LDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHK----GV--KPTSVLYSII 639

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GL +      AK++F +M +      + TY  ++ G C  N  +EA  L  ++    V
Sbjct: 640 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNV 699

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           + +++TFN++++ + K G+  EA  L + +   G+ P+   Y+ ++           A  
Sbjct: 700 KFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADN 759

Query: 290 LFVSMESNGCMRD 302
           LF+S+E +G   D
Sbjct: 760 LFISVEKSGHASD 772



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 130/291 (44%), Gaps = 11/291 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG--CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           I D M++     P V +FN L    CL  N   +   +L   + SIG+ P+ Y Y  L++
Sbjct: 550 IMDMMVQT-GQRPNVVTFNSLMEGYCLVGN--MEEAFALLDAMASIGIEPNCYIYGTLVD 606

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK GR+     V   +L     P +V ++ ++ GL    R   A  +F ++   G   
Sbjct: 607 GYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTV 666

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            + TY  ++ GLCR   T  A  L E++      F +  K D IT++ +   + K G   
Sbjct: 667 SIHTYGVVLGGLCRNNCTDEANMLLEKL------FAMNVKFDIITFNIVISAMFKVGRRQ 720

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AKELF  +    + P++ TY+ +I        + EA  LFI +   G   +    N I+
Sbjct: 721 EAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIV 780

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
             L    ++ +AS  L ++ +  +  +AS  + L   F   G+     +L 
Sbjct: 781 RMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGKYREHIKLL 831



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 6/274 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V  F+ +   L K         +   +   G  P++ T+N L+  +C +G +   F 
Sbjct: 525 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 584

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      P+   + +L+ G C   RI +A  +F  +   G KP    Y+ +++GL 
Sbjct: 585 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLF 644

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +   T  A  +F EM        +       TY  +  GLC+    D+A  L  K+   N
Sbjct: 645 QARRTTAAKKMFHEMIESGTTVSIH------TYGVVLGGLCRNNCTDEANMLLEKLFAMN 698

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  D++T+  +I          EAK LF  +   G+ PN+ T+++++  L K    +EA 
Sbjct: 699 VKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEAD 758

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
            L   + + G   D+ + N ++        V +A
Sbjct: 759 NLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKA 792


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 167/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++ D++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYMPSVVT 418



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +         D ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G M  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +   ++ P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 89/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+   K G++  A  + + + +  +RP    +NTLM+G+ 
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  V
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 164/337 (48%), Gaps = 10/337 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +   L      +    LF+ +   GL  D+YTY I+++ FCK G +      
Sbjct: 440 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 499

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     TP+ VT+T+LI       ++  A  LF  + + GC P++ TY+ LI+G C+
Sbjct: 500 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 559

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC----------KPDAITYSTITDGLCKEGFVDKAKE 184
            G    A  +FE M        V            +P+ +TY  + DG CK   V++A++
Sbjct: 560 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 619

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L   M  E   P+ + Y +LI G C     +EA+ +  EM + G    + T++ +++   
Sbjct: 620 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 679

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K  + D AS++L  M++    P+  +Y  ++DG C  G+ + A +L   ME  GC  +V 
Sbjct: 680 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVV 739

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +Y  +I+G+    +IE  L L   M SKG+ P  VTY
Sbjct: 740 TYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 776



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 172/356 (48%), Gaps = 33/356 (9%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           +PSP     FN L      +  +     L K++   G  P    YNILI   C   + S 
Sbjct: 328 YPSPKI---FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICG-DKDSL 383

Query: 71  GFVVL-------GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
            F +L         +L +    + +  +S  + LC+  +  +A ++  ++   G  PD  
Sbjct: 384 NFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTS 443

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY+ ++N LC      +A  LFEEM  G    G+V   D  TY+ + D  CK G +++A+
Sbjct: 444 TYSKVLNYLCNASKMELAFLLFEEMKRG----GLVA--DVYTYTIMVDSFCKAGLIEQAR 497

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           + F +M++    P+VVTYT+LI  +  A   + A  LF  M+ +G  PN+VT++ +++  
Sbjct: 498 KWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGH 557

Query: 244 CKNGKMDEASRLLELMI----------------QIGVRPDASVYNTLMDGFCLTGRVNRA 287
           CK G++++A ++ E M                     RP+   Y  L+DGFC + RV  A
Sbjct: 558 CKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEA 617

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++L  +M   GC  +   Y  LI+G CK  +++ A  + +EM   G   T+ TY++
Sbjct: 618 RKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 673



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 168/407 (41%), Gaps = 80/407 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L     K K       LF+ + S G  P++ TY+ LI+  CK G+V     +
Sbjct: 510 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQI 569

Query: 75  LGRILRSCFTPDA----------------VTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
             R+  S   PD                 VT+ +L+ G C   R+ EA  L   +   GC
Sbjct: 570 FERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGC 629

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANG-------------NGEFGV-------- 157
           +P+   Y  LI+GLC+ G    A  +  EM+               +  F V        
Sbjct: 630 EPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASK 689

Query: 158 --------VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
                    C P+ + Y+ + DGLCK G  D+A +L   M+++   P+VVTYT++I GF 
Sbjct: 690 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFG 749

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI------- 262
                     L   M  +GV PN VT+ V+++  CKNG +D A  LLE M Q        
Sbjct: 750 MIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTA 809

Query: 263 GVR--------------------------PDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           G R                          P  SVY  L+D      R+  A  L   + +
Sbjct: 810 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 869

Query: 297 -NGCMRDVFS-YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +  + D  S Y  LI   C   ++E A  L+SEM  KG+ P + ++
Sbjct: 870 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSF 916



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 156/370 (42%), Gaps = 50/370 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K    D+   + + ++   L  D +T        CK+G+      +
Sbjct: 192 PSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL 251

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT------- 127
              +    F PD V +T LI GLC  S   EA     ++RA  C P+V TY+T       
Sbjct: 252 ---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 308

Query: 128 ----------------------------LINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                                       L++  C +G    A  L ++M           
Sbjct: 309 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH------ 362

Query: 160 KPDAITYSTITDGLCKE------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
            P  + Y+ +   +C +        +D A++ + +M    +  + +  +S  R  C A  
Sbjct: 363 MPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 422

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +  EM+ QG  P+  T++ ++N LC   KM+ A  L E M + G+  D   Y  
Sbjct: 423 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 482

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++D FC  G + +A++ F  M   GC  +V +Y  LI+ Y K K++  A  L+  MLS+G
Sbjct: 483 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 542

Query: 334 IRPTVVTYNT 343
             P +VTY+ 
Sbjct: 543 CLPNIVTYSA 552



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 148/320 (46%), Gaps = 10/320 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           + M    P    ++ L   L K    D    +   ++  G    LYTY+ LI+ + K+ R
Sbjct: 624 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 683

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 VL ++L +   P+ V +T +I GLC   +  EA  L   +   GC+P+V TYT 
Sbjct: 684 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 743

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I+G    G     L L E M    G  GV   P+ +TY  + D  CK G +D A  L  
Sbjct: 744 MIDGFGMIGKIETCLELLERM----GSKGVA--PNYVTYRVLIDHCCKNGALDVAHNLLE 797

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +MK  +       Y  +I GF    ++ E+  L  E+      P +  + ++++ L K  
Sbjct: 798 EMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 855

Query: 248 KMDEASRLLELMIQIGVR--PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           +++ A RLLE +          +S YN+L++  CL  +V  A +LF  M   G + ++ S
Sbjct: 856 RLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQS 915

Query: 306 YGILINGYCKNKEIEGALSL 325
           +  LI G  +N +I  AL L
Sbjct: 916 FCSLIKGLFRNSKISEALLL 935



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 149/359 (41%), Gaps = 32/359 (8%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKH----YDTVLSLFKRLNSIGLFPDLYTY------- 55
           +LR+   P  V SF +  G     KH    Y+ ++ L  R +   +  +           
Sbjct: 97  VLRLIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKE 156

Query: 56  ------NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
                 N+L+   C+ G  S     LGR+    F P   T+  LI+      R+  A+ +
Sbjct: 157 VFGQFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLI 216

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             ++     + D FT       LC+ G    AL L E       E  V   PD + Y+ +
Sbjct: 217 HREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE------TENFV---PDTVFYTKL 267

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GLC+    ++A +   +M+  +  P+VVTY++L+ G          K +   MM +G 
Sbjct: 268 ISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGC 327

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR------ 283
            P+   FN +++  C +G    A +LL+ M++ G  P   VYN L+   C          
Sbjct: 328 YPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDL 387

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++ A++ +  M + G + +  +        C   + E A S+  EM+ +G  P   TY+
Sbjct: 388 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYS 446



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 11/231 (4%)

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE-FGVVCKPDAITYSTITDG 172
           R  G K     Y  L++ + R     V     +++ + + E FG          + +   
Sbjct: 116 RQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGQF-------LNVLVRK 168

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            C+ G    A E   ++KD    P   TY  LI+ F  A+  + A  +  EM    ++ +
Sbjct: 169 HCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMD 228

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
             T       LCK GK  EA  L+E        PD   Y  L+ G C       A +   
Sbjct: 229 GFTLRCFAYSLCKVGKWREALTLVETE---NFVPDTVFYTKLISGLCEASLFEEAMDFLN 285

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M +  C+ +V +Y  L+ G    K++     + + M+ +G  P+   +N+
Sbjct: 286 RMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 336



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 2/108 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLN--SIGLFPDLYTYNILINCFCKMGRVSP 70
           + P +  + +L   L K +  +  L L + +   S  L     TYN LI   C   +V  
Sbjct: 837 TAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVET 896

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
            F +   + +    P+  +F SLIKGL   S+I EA  L   +    C
Sbjct: 897 AFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMVC 944


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 171/336 (50%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM       G++  P+ +T++T+ DG CK G VD A E++
Sbjct: 217 VLINGLCKESKMDDANELFDEMLVK----GLI--PNGVTFTTLIDGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  + + PD++TY +LI G     D  +A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 271 KQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 331 GDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  EM   G  P+VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYN 426



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 163/299 (54%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G ++ GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +L S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M            PD ITY+T+  GL K+G + +A +L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQM------LSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TY +LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +L   M+ +G +  V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D NE   L   M+  GVQP+V
Sbjct: 153 CKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDV 212

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 213 YTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 272

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G  K  +++ A  L  EM  KG++P   TY T
Sbjct: 273 MLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXT 322



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 113/237 (47%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC     + A +L + + +  G+      F  +       + D    
Sbjct: 16  RHTLHSYCTMIHFLCTHQMLLEAKSLIQVVVSRKGKGSASAVFATILETKGTQRSDIYVL 75

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++  +     T   ++        +      + E+++
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 135

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G +N 
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNE 195

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTT 252


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 179/369 (48%), Gaps = 33/369 (8%)

Query: 7   MLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           M +M  S   P + ++N +     K   +   + L   +N  G+  D+ TYN+LI+  C+
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCR 275

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
             R + G+++L  + +    P+ VT+ +L+ G   E +++ A  L  ++  FG  P+  T
Sbjct: 276 SNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVT 335

Query: 125 YTTLINGLCRTGHTIVALNLFEEM-ANG-----------------NGEFGV--------- 157
           +  LI+G    G+   AL +F  M A G                 N EF +         
Sbjct: 336 FNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMK 395

Query: 158 ---VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
              VC    ITY+ + DGLCK GF+D+A  +  +M  + I+PD+VTY++LI GFC     
Sbjct: 396 RNGVC-VGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRL 454

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             AK +   +   G+ PN + ++ ++   C+ G + E  R+ E MI  G  PD   +N L
Sbjct: 455 KTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVL 514

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +   C  G+V  A+E    M S+G + +  S+  LINGY  + E   A S++ EM   G 
Sbjct: 515 VTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGH 574

Query: 335 RPTVVTYNT 343
            PT  TY +
Sbjct: 575 HPTFFTYGS 583



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 159/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N + G + K+    +V S  K +    + PD+ T+NILIN  C  G       +
Sbjct: 156 PSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYL 215

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++ +S + P  VT+ +++   C + R   A  L   +   G   DV TY  LI+ LCR
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCR 275

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +  +     L  +M         +  P+ +TY+T+ +G   EG V  A++L  +M    +
Sbjct: 276 SNRSAKGYLLLRDMRKR------MIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGL 329

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ VT+ +LI G     ++ EA  +F  M  +G+    V++ V+++ LCKN + D A  
Sbjct: 330 SPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARG 389

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M + GV      Y  ++DG C  G ++ A  +   M  +G   D+ +Y  LING+C
Sbjct: 390 FYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFC 449

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   ++ A  +   +   G+ P  + Y+T
Sbjct: 450 RVGRLKTAKEIVCRIYRVGLSPNGIIYST 478



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 155/335 (46%), Gaps = 8/335 (2%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R+  S P V  F+IL     +       L +F+ +   G  P +YT N ++    K    
Sbjct: 117 RLCNSNPSV--FDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCED 174

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
              +  L  +L+    PD  TF  LI  LCAE    +++ L  K+   G  P + TY T+
Sbjct: 175 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTV 234

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           ++  C+ G    A+ L + M N  G    VC     TY+ +   LC+     K   L   
Sbjct: 235 LHWYCKKGRFKAAIELLDHM-NLKGVNADVC-----TYNMLIHDLCRSNRSAKGYLLLRD 288

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M+   I+P+ VTY +L+ GF        A+ L  EM+  G+ PN VTFN +++     G 
Sbjct: 289 MRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGN 348

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
             EA ++  +M   G+      Y  L+DG C     + A+  ++ M+ NG      +Y  
Sbjct: 349 FKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTG 408

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +I+G CKN  ++ A+ + +EM   GI P +VTY+ 
Sbjct: 409 MIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSA 443



 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 153/325 (47%), Gaps = 9/325 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+ +L   L KN  +D     + R+   G+     TY  +I+  CK G +    V+L  +
Sbjct: 370 SYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEM 429

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +    PD VT+++LI G C   R+  A  +  ++   G  P+   Y+TLI   CR G  
Sbjct: 430 SKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL 489

Query: 139 IVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              + ++E M   GN        PD  T++ +   LCK G V +A+E    M  + I P+
Sbjct: 490 KETIRIYEAMILEGN-------TPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPN 542

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            V++  LI G+  + +  +A  +F EM   G  P   T+  ++  LCK G +  A + L+
Sbjct: 543 AVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLK 602

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            +  +    D  + NTL+   C +G +++A  LF  M     + D F+Y  LI+G C+  
Sbjct: 603 SLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKG 662

Query: 318 EIEGALSLYSEMLSKG-IRPTVVTY 341
           +   A+    E  ++G + P  V Y
Sbjct: 663 KTVIAILFAKEAEARGNLVPNKVMY 687



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 159/343 (46%), Gaps = 11/343 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + + ML    SP  V +FN L        ++   L +F  + + GL     +Y +L++  
Sbjct: 320 LLNEMLTFGLSPNHV-TFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGL 378

Query: 63  CKMGR--VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           CK     ++ GF +  R+ R+      +T+T +I GLC    + EA  +  ++   G  P
Sbjct: 379 CKNAEFDLARGFYM--RMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDP 436

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+ TY+ LING CR G    A  +   +      + V   P+ I YST+    C+ G + 
Sbjct: 437 DIVTYSALINGFCRVGRLKTAKEIVCRI------YRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +   ++  M  E   PD  T+  L+   C A    EA+     M   G+ PN V+F+ ++
Sbjct: 491 ETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLI 550

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N    +G+  +A  + + M ++G  P    Y +L+ G C  G +  A++   S+++    
Sbjct: 551 NGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAA 610

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D      LI   CK+  ++ A+SL+ EM+ + I P   TY +
Sbjct: 611 VDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTS 653



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 167/371 (45%), Gaps = 45/371 (12%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R+  SP  +    +++ C       +T+  +++ +   G  PD +T+N+L+   CK G+V
Sbjct: 466 RVGLSPNGIIYSTLIYNCCRMGCLKETI-RIYEAMILEGNTPDHFTFNVLVTSLCKAGKV 524

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
           +     +  +      P+AV+F  LI G  +    ++A ++F ++   G  P  FTY +L
Sbjct: 525 AEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSL 584

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           + GLC+ GH I A    + + N      V    D +  +T+   +CK G +DKA  LF +
Sbjct: 585 LKGLCKGGHLIAAEKFLKSLQN------VPAAVDTVMCNTLITAMCKSGNLDKAVSLFGE 638

Query: 189 MKDENINPDVVTYTSLIRGFCY------------------------------------AN 212
           M   +I PD  TYTSLI G C                                     A 
Sbjct: 639 MVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAG 698

Query: 213 DWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            W +A   F + MD+ G+  +VVT N +++   + GK+++   LL  M      P+ + Y
Sbjct: 699 QW-KAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTY 757

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N L+ G+     V+ +  L+ SM  +G + D  +   +I G C++  +E  L +    + 
Sbjct: 758 NILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIGLKILKAFIC 817

Query: 332 KGIRPTVVTYN 342
           +G+     T+N
Sbjct: 818 RGVEVDRHTFN 828



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 141/295 (47%), Gaps = 12/295 (4%)

Query: 50   PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
            P+L TYNIL++ + K   VS  F++   ++ S   PD +T  S+I G+C ES ++E    
Sbjct: 752  PNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGIC-ESNMLEIG-- 808

Query: 110  FTKLRAFGCKP---DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
               L+AF C+    D  T+  LI+  C  G     +N   +M N     G+    D  T 
Sbjct: 809  LKILKAFICRGVEVDRHTFNMLISKCCANGE----INWAFDMVNVMTSLGI--SLDKNTC 862

Query: 167  STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
              I   L +     +++ +  +M  + I+P+   Y  L+ G C   D   A  +  EM+ 
Sbjct: 863  DAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIA 922

Query: 227  QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
              + P  V  + ++  L K GK DEAS LL  M+++ + P  + + TLM  FC  G V  
Sbjct: 923  HKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTE 982

Query: 287  AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            A EL V M + G   D+ SY +LI G C   ++  A  L+ EM   G    V TY
Sbjct: 983  ALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTY 1037



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 152/358 (42%), Gaps = 32/358 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   SF+ L      +       S+F  +  +G  P  +TY  L+   CK G +      
Sbjct: 541 PNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKF 600

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +       D V   +LI  +C    + +A +LF ++      PD FTYT+LI+GLCR
Sbjct: 601 LKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCR 660

Query: 135 TGHTIVALNLFEEMANGNGEF-------------------------------GVVCKPDA 163
            G T++A+ LF + A   G                                  +    D 
Sbjct: 661 KGKTVIAI-LFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDV 719

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +T + + DG  + G ++K  +L  +M ++N  P++ TY  L+ G+      + +  L+  
Sbjct: 720 VTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRS 779

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+  G+ P+ +T   I+  +C++  ++   ++L+  I  GV  D   +N L+   C  G 
Sbjct: 780 MILSGILPDKLTCYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGE 839

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +N A ++   M S G   D  +   +++   +N   + +  +  EM  +GI P    Y
Sbjct: 840 INWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 897



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 8/329 (2%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + ++NIL    +K KH  T   L++ +   G+ PD  T   +I   C+   +  G  +
Sbjct: 752  PNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIGLKI 811

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L   +      D  TF  LI   CA   I  A  +   + + G   D  T   +++ L R
Sbjct: 812  LKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNR 871

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  +  +  EM+           P++  Y  + +GLC+ G +  A  +  +M    I
Sbjct: 872  NHRFQESRMVLHEMSKQG------ISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKI 925

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             P  V  ++++R        +EA  L   M+   + P + +F  +M+  CKNG + EA  
Sbjct: 926  CPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALE 985

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING-Y 313
            L  +M   G++ D   YN L+ G C  G +  A ELF  M+ +G + +V +Y  L+ G  
Sbjct: 986  LRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGIL 1045

Query: 314  CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +  E  G   +  ++L++G   T +++N
Sbjct: 1046 SQGTEFSGTDIILKDLLARGF-ITAMSFN 1073



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 136/276 (49%), Gaps = 7/276 (2%)

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G+ S  F  L    R C +  +V F  LI+    E  I ++  +F  +  +G  P V+T 
Sbjct: 103 GKSSFVFGALMATYRLCNSNPSV-FDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTC 161

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
             ++  + ++   +   +  +EM         +C PD  T++ + + LC EG   K+  L
Sbjct: 162 NAILGSIVKSCEDVSVWSFLKEMLKRK-----IC-PDVATFNILINVLCAEGSFKKSSYL 215

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             KM+     P +VTY +++  +C    +  A  L   M  +GV  +V T+N+++++LC+
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCR 275

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           + +  +   LL  M +  + P+   YNTL++GF   G+V  A++L   M + G   +  +
Sbjct: 276 SNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVT 335

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +  LI+G+      + AL ++  M +KG+  T V+Y
Sbjct: 336 FNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSY 371



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 97/237 (40%), Gaps = 8/237 (3%)

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
            AL    R     P VF    LI    R G    +L +F  M    G +G    P   T 
Sbjct: 110 GALMATYRLCNSNPSVFD--ILIRVYLREGMIQDSLEIFRLM----GLYGF--NPSVYTC 161

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + I   + K            +M    I PDV T+  LI   C    + ++  L  +M  
Sbjct: 162 NAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEK 221

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G  P +VT+N +++  CK G+   A  LL+ M   GV  D   YN L+   C + R  +
Sbjct: 222 SGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAK 281

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L   M       +  +Y  L+NG+    ++  A  L +EML+ G+ P  VT+N 
Sbjct: 282 GYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNA 338



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 2/127 (1%)

Query: 11   HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
            H   PP  + + +   LAK    D    L + +  + L P + ++  L++ FCK G V+ 
Sbjct: 923  HKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTE 982

Query: 71   GFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
              + L  ++ +C    D V++  LI GLCA+  +  A  LF +++  G   +V TY  L+
Sbjct: 983  A-LELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALV 1041

Query: 130  NGLCRTG 136
             G+   G
Sbjct: 1042 GGILSQG 1048


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 176/361 (48%), Gaps = 43/361 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +F +L   L +   +  V+ LF  L S G+     TY ++++  C  G  +    ++ R 
Sbjct: 21  AFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELV-RE 79

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           L   +TP    +  +I GLC  SR+M+A  +  K+      P+VFTYT L+NGLCR+  T
Sbjct: 80  LSGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKT 139

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
            +A  +F+EM   NG     CKP+ ITY T+   L + G +D+A  + ++ +   +  DV
Sbjct: 140 KLAREVFQEMKR-NG-----CKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDV 193

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI------------------- 239
           +T T+++ G C A+  ++A     EM   GV+PN VT++ +                   
Sbjct: 194 ITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEE 253

Query: 240 -----------------MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
                            ++ LCK G +D A + +E + Q GV PD   Y+ L++ F   G
Sbjct: 254 EKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAG 313

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + + + EL   M  NG   DV +Y  LIN  CK ++ + A  L   M + G  P VVTYN
Sbjct: 314 QFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYN 373

Query: 343 T 343
           +
Sbjct: 374 S 374



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 167/329 (50%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL   L ++        +F+ +   G  P+  TY  LI    + G +     V
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180

Query: 75  LGRILRSCFTP-DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +    RS   P D +T T+++ GLC  SR+ +A     ++R  G +P+  TY+ L++G  
Sbjct: 181 MIE-QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFR 239

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G     +  FEE     G        +A  Y    D LCK G++D+A++   +++   
Sbjct: 240 QHGELDRVIRFFEEEKARKG-----GSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSG 294

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PDVVTY+ LI  F  A  ++ +  L  +M   GV+P+VVT++ ++N LCK  K  +A 
Sbjct: 295 VVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAF 354

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RLLELM   G  P+   YN++MDG C +G+++    ++  M  + C  DV +Y I++NG 
Sbjct: 355 RLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGL 414

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            K   ++ A+ L+  + S    P    Y+
Sbjct: 415 SKAGMLDSAVKLFELIKSSREGPDAAAYS 443



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 137/290 (47%), Gaps = 21/290 (7%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  V +   + G L K    D  L   + +  +G+ P+  TY+ L++ F + G       
Sbjct: 190 PTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGE------ 243

Query: 74  VLGRILR--------SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
            L R++R           + +A  +   +  LC    +  A     +LR  G  PDV TY
Sbjct: 244 -LDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTY 302

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           + LIN   R G    +L L E+M   NG      KPD +TYST+ + LCKE     A  L
Sbjct: 303 SMLINTFARAGQFDASLELLEDMRR-NG-----VKPDVVTYSTLINVLCKERKFQDAFRL 356

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
              M+     P+VVTY S++ G C +   +E   ++  M+     P+VVT+++IMN L K
Sbjct: 357 LELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSK 416

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            G +D A +L EL+      PDA+ Y+ ++   C  G++  A  ++  ME
Sbjct: 417 AGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGME 466



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 141/329 (42%), Gaps = 78/329 (23%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D+  FT L   L   S+  E   LFT L + G      TY  +++GLC  G    AL L 
Sbjct: 18  DSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELV 77

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
            E++        V  P    Y+ I  GLC+   V  A ++  KM +E+I P+V TYT L+
Sbjct: 78  RELSG-------VYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILL 130

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL---------- 255
            G C +N    A+ +F EM   G +PN +T+  ++  L + G++DEA R+          
Sbjct: 131 NGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELP 190

Query: 256 -------------------------LELMIQIGVRPDASVYNTLMDGF------------ 278
                                    +E M Q+GVRP+   Y+ L+ GF            
Sbjct: 191 TDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRF 250

Query: 279 ------------------------CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
                                   C  G ++RA++    +  +G + DV +Y +LIN + 
Sbjct: 251 FEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFA 310

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  + + +L L  +M   G++P VVTY+T
Sbjct: 311 RAGQFDASLELLEDMRRNGVKPDVVTYST 339



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 7/239 (2%)

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
           M A  L   +   G K D   +T L   L R       + LF  +A+    +G       
Sbjct: 1   MAAKLLERSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYG------E 54

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
            TY  + DGLC  G  ++A EL  ++      P +  Y  +I G C A+   +A  +  +
Sbjct: 55  TTYKLVVDGLCGAGMANQALELVRELSG-VYTPTLFIYNGIITGLCRASRVMDAYKVLEK 113

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+++ + PNV T+ +++N LC++ K   A  + + M + G +P+   Y TL+      G 
Sbjct: 114 MVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGE 173

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++ A  + +   S     DV +   ++ G CK   ++ AL    EM   G+RP  VTY+
Sbjct: 174 IDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYS 232



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR     P V ++++L    A+   +D  L L + +   G+ PD+ TY+ LIN  CK  +
Sbjct: 290 LRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERK 349

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
               F +L  +  +   P+ VT+ S++ GLC   ++ E   ++  +    C PDV TY+ 
Sbjct: 350 FQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSI 409

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           ++NGL + G    A+ LFE + +          PDA  YS +   LC+ G +++A
Sbjct: 410 IMNGLSKAGMLDSAVKLFELIKSSRE------GPDAAAYSMVITSLCRAGKLEEA 458


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 169/327 (51%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +N L      +   D    + +R+ + G+ P + T+  LI  +CKM R+   F +  
Sbjct: 224 VVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYE 283

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++RS   PD VT ++L+ GLC + R  EA ALF ++   G  P+  TY T I+ L +  
Sbjct: 284 GMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQ 343

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               +L L  EM +     GV    D + Y+T+ D L KEG +++AK++      +NI P
Sbjct: 344 RVNESLGLLGEMVS----RGVAM--DLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITP 397

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + VTYT L+   C A + + A+ + ++M ++ V PNVVTF+ I+N L K G + +A+  +
Sbjct: 398 NCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYM 457

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M   G+ P+   Y TL+DGF        A +++  M   G   + F    L+NG  KN
Sbjct: 458 RKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKN 517

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             IE A +L+ +M  +G+    V Y T
Sbjct: 518 GNIEEAEALFKDMGERGLLLDHVNYAT 544



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 168/343 (48%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +++ M+R     P V + + L   L ++  +    +LF+ ++ IG+ P+  TY   I+
Sbjct: 279 FTLYEGMVR-SGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFID 337

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K+ RV+    +LG ++      D V +T+++  L  E +I EA  +     +    P
Sbjct: 338 SLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITP 397

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  TYT L++  CR G+   A  +  +M   +        P+ +T+S+I +GL K G + 
Sbjct: 398 NCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKS------VSPNVVTFSSILNGLVKRGCIA 451

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA     KMKD  I P+VVTY +LI GF        A  ++ +M+ +GV+ N    + ++
Sbjct: 452 KAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLV 511

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N L KNG ++EA  L + M + G+  D   Y TLMDG   TG +  A ++   +      
Sbjct: 512 NGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLS 571

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D   Y + IN  C+  +   A S   EM + G+ P   TYNT
Sbjct: 572 PDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNT 614



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 163/364 (44%), Gaps = 41/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N+   CL +   +    S  K + + GL PD  TYN +I+  C+ G  S    +
Sbjct: 572 PDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKL 631

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP-------------- 120
           L  +  S   P+ +T+T+L+ GL     + +A  L  ++ + G  P              
Sbjct: 632 LNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSG 691

Query: 121 ---------------------DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                                D+  Y TL++ LC  G T  A  + +EM       G   
Sbjct: 692 SRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEM------LGRGI 745

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            PD IT++ +  G CK   +D A   + +M  + ++P++ T+ +L+ G   A    EA  
Sbjct: 746 APDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADT 805

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +  EM   G++PN +T+++++    K     EA RL   M+  G  P AS YN+L+  F 
Sbjct: 806 VICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFA 865

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +N+AKELF  M+  G +    +Y IL+NG+ K +       L  +M   G +P+  
Sbjct: 866 KAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFKPSKG 925

Query: 340 TYNT 343
           T ++
Sbjct: 926 TISS 929



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 147/325 (45%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++  L   L K  +    L + + L    L PD   YN+ INC C++G+ S     L  +
Sbjct: 541 NYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEM 600

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
             +   PD  T+ ++I   C E    +A  L  +++    KP++ TYTTL+ GL   G  
Sbjct: 601 RNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVV 660

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  L  EMA+          P  +TY  +              E+   M    ++ D+
Sbjct: 661 EKAKYLLNEMASAG------FTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADI 714

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
             Y +L+   C      +A  +  EM+ +G+ P+ +TFN ++   CK+  +D A      
Sbjct: 715 TVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQ 774

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+  G+ P+ + +NTL+ G    GR+  A  +   M+  G   +  +Y IL+ GY K   
Sbjct: 775 MLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSN 834

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
              AL LY EM+SKG  P   TYN+
Sbjct: 835 KVEALRLYCEMVSKGFIPKASTYNS 859



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 164/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +   L G   K K  +   +L++ +   G+ PD+ T + L++  C+ GR S  + +
Sbjct: 257 PSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYAL 316

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +    P+ VT+ + I  L    R+ E+  L  ++ + G   D+  YTT+++ L +
Sbjct: 317 FREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGK 376

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A ++     + N        P+ +TY+ + D  C+ G +D A+++ L+M+++++
Sbjct: 377 EGKIEEAKDVLRHALSDN------ITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSV 430

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+VVT++S++ G        +A     +M D G+ PNVVT+  +++   K    + A  
Sbjct: 431 SPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALD 490

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M+  GV  +  + ++L++G    G +  A+ LF  M   G + D  +Y  L++G  
Sbjct: 491 VYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLF 550

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   +  AL +  E++ + + P  V YN
Sbjct: 551 KTGNMPAALKVGQELMERNLSPDAVVYN 578



 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 6/289 (2%)

Query: 55  YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR 114
           +N LI+ +CK+  ++    V+ R+     + D V + +L+ G         A  +  +++
Sbjct: 192 WNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMK 251

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
           A G +P V T+TTLI   C+      A  L+E M       GV+  PD +T S + DGLC
Sbjct: 252 ADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRS----GVL--PDVVTLSALVDGLC 305

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           ++G   +A  LF +M    + P+ VTY + I         NE+  L  EM+ +GV  ++V
Sbjct: 306 RDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLV 365

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
            +  +M+ L K GK++EA  +L   +   + P+   Y  L+D  C  G ++ A+++ + M
Sbjct: 366 MYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQM 425

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           E      +V ++  ++NG  K   I  A     +M   GI P VVTY T
Sbjct: 426 EEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGT 474



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 157/315 (49%), Gaps = 6/315 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K    +    + +   S  + P+  TY +L++  C+ G +     +L ++     +P+
Sbjct: 374 LGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPN 433

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            VTF+S++ GL     I +AA    K++  G  P+V TY TLI+G  +      AL+++ 
Sbjct: 434 VVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYR 493

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           +M +   E       +     ++ +GL K G +++A+ LF  M +  +  D V Y +L+ 
Sbjct: 494 DMLHEGVE------ANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMD 547

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G     +   A  +  E+M++ + P+ V +NV +N LC+ GK  EA   L+ M   G+ P
Sbjct: 548 GLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEP 607

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D + YNT++   C  G  ++A +L   M+ +    ++ +Y  L+ G  +   +E A  L 
Sbjct: 608 DQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLL 667

Query: 327 SEMLSKGIRPTVVTY 341
           +EM S G  PT +TY
Sbjct: 668 NEMASAGFTPTPLTY 682



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 157/338 (46%), Gaps = 20/338 (5%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P+PPP      L   LA +     +++   R   +    D  T N +I  +C +  + P 
Sbjct: 46  PAPPPARLLRRLIPALASSG----LVAAASRFRPVP--GDPLTLNSIILSYCSLHALRPA 99

Query: 72  FVVLGRILRSCFTP------DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
                 +LRS   P      D V++   + GL  +     A  + +++   G   D  T 
Sbjct: 100 L----SLLRSSSGPQPQVAADTVSYNIFLAGLSEQGHGRLAPPVLSEMCKRGVPWDGVTM 155

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           +T + GL RTG    A  L E +  G G  G+      + ++ + DG CK   +  A  +
Sbjct: 156 STALVGLSRTGLVGEAAALAEMLVRGRGIDGL----GVVGWNALIDGYCKVQDMAAALAV 211

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             +M  + ++ DVV Y +L+ GF Y+ D + A  +   M   GV+P+VVT   ++ E CK
Sbjct: 212 VERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCK 271

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
             +++EA  L E M++ GV PD    + L+DG C  GR + A  LF  M+  G   +  +
Sbjct: 272 MKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVT 331

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y   I+   K + +  +L L  EM+S+G+   +V Y T
Sbjct: 332 YCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTT 369



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 7/282 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           +P P+    +L  C      Y  +L + + +   GL  D+  YN L++  C  G      
Sbjct: 676 TPTPLTYRRVLQACSGSRSPY-VILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKAT 734

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           +VL  +L     PD +TF +LI G C  S +  A A + ++   G  P++ T+ TL+ GL
Sbjct: 735 IVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGL 794

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
              G    A  +  EM     + G+  +P+ +TY  +  G  K+    +A  L+ +M  +
Sbjct: 795 ESAGRIGEADTVICEMK----KMGL--EPNNLTYDILVTGYAKKSNKVEALRLYCEMVSK 848

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              P   TY SLI  F  A   N+AK LF EM  +GV     T+++++N   K     E 
Sbjct: 849 GFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEV 908

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
             LL+ M ++G +P     +++   F   G    A+ L  ++
Sbjct: 909 RILLKDMKELGFKPSKGTISSMSRAFSKPGMTWEARRLLKTL 950



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 6/216 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ PD  T+N LI   CK   +   F    ++L    +P+  TF +L+ GL +  RI EA
Sbjct: 744 GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEA 803

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +  +++  G +P+  TY  L+ G  +  + + AL L+ EM +     G +  P A TY
Sbjct: 804 DTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSK----GFI--PKASTY 857

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +++     K G +++AKELF +MK   +     TY  L+ G+    +  E + L  +M +
Sbjct: 858 NSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKE 917

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
            G +P+  T + +     K G   EA RLL+ + ++
Sbjct: 918 LGFKPSKGTISSMSRAFSKPGMTWEARRLLKTLFKV 953


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 167/323 (51%), Gaps = 6/323 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P+     +   L K K++  V   +K +   G    LY +NIL++ FCK G
Sbjct: 78  LTREHKFWVPLDXCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEG 137

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +L+ G      + E   L   + A G +PDV+TY+
Sbjct: 138 DIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYS 197

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM +     G+V  P+ +T++T+ DG CK G VD A E++
Sbjct: 198 VLINGLCKESKMDDANELFDEMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIY 251

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +L  G C   D  +A  L  EM  +G++P+ +T+  +++  CK 
Sbjct: 252 KQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKE 311

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G M+ A    + MIQ  +R D  VY  L+ G C  GR   A+++   M S G   +  +Y
Sbjct: 312 GDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTY 371

Query: 307 GILINGYCKNKEIEGALSLYSEM 329
            ++IN +CK  ++     L  EM
Sbjct: 372 TMIINEFCKKGDVWTGSKLLKEM 394



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 153/282 (54%), Gaps = 6/282 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 120 PASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 179

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 180 LKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 239

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+T GLCK+G + +A +L  +M  + 
Sbjct: 240 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKG 293

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 294 LKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAE 353

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+
Sbjct: 354 KMLREMLSVGLKPNXGTYTMIINEFCKKGDVWTGSKLLKEMQ 395



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 97/170 (57%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CKEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M   GVQP+V
Sbjct: 134 CKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDV 193

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 194 YTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 253

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S     D+ +Y  L  G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 254 MLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 303



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 73/123 (59%)

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
           + E+++ G   ++  FN++M+  CK G +  A  + + + + G+RP    +NTLM+G+  
Sbjct: 111 YKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIR 170

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G ++    L  +M ++G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT
Sbjct: 171 LGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 230

Query: 341 YNT 343
           + T
Sbjct: 231 FTT 233


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 166/342 (48%), Gaps = 20/342 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +   L      +    LF+ +   GL  D+YTY I+++ FCK G +      
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     TP+ VT+T+LI       ++  A  LF  + + GC P++ TY+ LI+G C+
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600

Query: 135 TGHTIVALNLFEEMA---------------NGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
            G    A  +FE M                + N E     +P+ +TY  + DG CK   V
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSE-----RPNVVTYGALLDGFCKSHRV 655

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           ++A++L   M  E   P+ + Y +LI G C     +EA+ +  EM + G    + T++ +
Sbjct: 656 EEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSL 715

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++   K  + D AS++L  M++    P+  +Y  ++DG C  G+ + A +L   ME  GC
Sbjct: 716 IDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGC 775

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +V +Y  +I+G+    +IE  L L   M SKG+ P  VTY
Sbjct: 776 QPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 168/355 (47%), Gaps = 31/355 (8%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC------K 64
           +PSP     FN L      +  +     L K++   G  P    YNILI   C       
Sbjct: 369 YPSPKI---FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
              +         +L +    + +  +S  + LC+  +  +A ++  ++   G  PD  T
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y+ ++N LC      +A  LFEEM  G    G+V   D  TY+ + D  CK G +++A++
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRG----GLVA--DVYTYTIMVDSFCKAGLIEQARK 539

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
            F +M++    P+VVTYT+LI  +  A   + A  LF  M+ +G  PN+VT++ +++  C
Sbjct: 540 WFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599

Query: 245 KNGKMDEASRLLELMI----------------QIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           K G++++A ++ E M                     RP+   Y  L+DGFC + RV  A+
Sbjct: 600 KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEAR 659

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +L  +M   GC  +   Y  LI+G CK  +++ A  + +EM   G   T+ TY++
Sbjct: 660 KLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 168/407 (41%), Gaps = 80/407 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L     K K       LF+ + S G  P++ TY+ LI+  CK G+V     +
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQI 610

Query: 75  LGRILRSCFTPDA----------------VTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
             R+  S   PD                 VT+ +L+ G C   R+ EA  L   +   GC
Sbjct: 611 FERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGC 670

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANG-------------NGEFGV-------- 157
           +P+   Y  LI+GLC+ G    A  +  EM+               +  F V        
Sbjct: 671 EPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASK 730

Query: 158 --------VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
                    C P+ + Y+ + DGLCK G  D+A +L   M+++   P+VVTYT++I GF 
Sbjct: 731 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFG 790

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI------- 262
                     L   M  +GV PN VT+ V+++  CKNG +D A  LLE M Q        
Sbjct: 791 MIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTA 850

Query: 263 GVR--------------------------PDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           G R                          P  SVY  L+D      R+  A  L   + +
Sbjct: 851 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 910

Query: 297 -NGCMRDVFS-YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +  + D  S Y  LI   C   ++E A  L+SEM  KG+ P + ++
Sbjct: 911 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSF 957



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 156/370 (42%), Gaps = 50/370 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K    D+   + + ++   L  D +T        CK+G+      +
Sbjct: 233 PSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL 292

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT------- 127
              +    F PD V +T LI GLC  S   EA     ++RA  C P+V TY+T       
Sbjct: 293 ---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349

Query: 128 ----------------------------LINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                                       L++  C +G    A  L ++M           
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH------ 403

Query: 160 KPDAITYSTITDGLCKE------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
            P  + Y+ +   +C +        +D A++ + +M    +  + +  +S  R  C A  
Sbjct: 404 MPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 463

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +  EM+ QG  P+  T++ ++N LC   KM+ A  L E M + G+  D   Y  
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++D FC  G + +A++ F  M   GC  +V +Y  LI+ Y K K++  A  L+  MLS+G
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 334 IRPTVVTYNT 343
             P +VTY+ 
Sbjct: 584 CLPNIVTYSA 593



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 148/320 (46%), Gaps = 10/320 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           + M    P    ++ L   L K    D    +   ++  G    LYTY+ LI+ + K+ R
Sbjct: 665 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 724

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 VL ++L +   P+ V +T +I GLC   +  EA  L   +   GC+P+V TYT 
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 784

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I+G    G     L L E M    G  GV   P+ +TY  + D  CK G +D A  L  
Sbjct: 785 MIDGFGMIGKIETCLELLERM----GSKGVA--PNYVTYRVLIDHCCKNGALDVAHNLLE 838

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +MK  +       Y  +I GF    ++ E+  L  E+      P +  + ++++ L K  
Sbjct: 839 EMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896

Query: 248 KMDEASRLLELMIQIGVR--PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           +++ A RLLE +          +S YN+L++  CL  +V  A +LF  M   G + ++ S
Sbjct: 897 RLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQS 956

Query: 306 YGILINGYCKNKEIEGALSL 325
           +  LI G  +N +I  AL L
Sbjct: 957 FCSLIKGLFRNSKISEALLL 976



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 149/359 (41%), Gaps = 32/359 (8%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKH----YDTVLSLFKRLNSIGLFPDLYTY------- 55
           +LR+   P  V SF +  G     KH    Y+ ++ L  R +   +  +           
Sbjct: 138 VLRLIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKE 197

Query: 56  ------NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
                 N+L+   C+ G  S     LGR+    F P   T+  LI+      R+  A+ +
Sbjct: 198 VFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLI 257

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             ++     + D FT       LC+ G    AL L E       E  V   PD + Y+ +
Sbjct: 258 HREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE------TENFV---PDTVFYTKL 308

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GLC+    ++A +   +M+  +  P+VVTY++L+ G          K +   MM +G 
Sbjct: 309 ISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGC 368

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR------ 283
            P+   FN +++  C +G    A +LL+ M++ G  P   VYN L+   C          
Sbjct: 369 YPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDL 428

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++ A++ +  M + G + +  +        C   + E A S+  EM+ +G  P   TY+
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYS 487



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 11/231 (4%)

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE-FGVVCKPDAITYSTITDG 172
           R  G K     Y  L++ + R     V     +++ + + E FG          + +   
Sbjct: 157 RQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEF-------LNVLVRK 209

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            C+ G    A E   ++KD    P   TY  LI+ F  A+  + A  +  EM    ++ +
Sbjct: 210 HCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMD 269

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
             T       LCK GK  EA  L+E        PD   Y  L+ G C       A +   
Sbjct: 270 GFTLRCFAYSLCKVGKWREALTLVETE---NFVPDTVFYTKLISGLCEASLFEEAMDFLN 326

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M +  C+ +V +Y  L+ G    K++     + + M+ +G  P+   +N+
Sbjct: 327 RMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/363 (30%), Positives = 173/363 (47%), Gaps = 41/363 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FN +   L K       + +F ++    L PD +TY  LI   C+  ++   F V
Sbjct: 195 PSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEV 254

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+++    P++VT+++LI GLC E RI EA  +  ++   G +P V+TYT  I+ LC 
Sbjct: 255 FDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCD 314

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+NL   M    G+ G  C P   TY+ I  GL + G ++ A  ++ KM  E +
Sbjct: 315 IGRVDDAINLVRSM----GKKG--CSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGL 368

Query: 195 NPDVVTYTSLIRGFCYAN---------DWNE--------------------------AKC 219
            P+ VTY +LI   C            DW E                          A  
Sbjct: 369 VPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMV 428

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +F +M+  G  P VVT+N ++ E  K G ++ A+R L +M +    PD   Y  L+ GFC
Sbjct: 429 VFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFC 488

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G+++ A   F  M   G   + ++Y  +I+GYCK  +I+ ALSL+  M   G   ++ 
Sbjct: 489 KGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIE 548

Query: 340 TYN 342
           TYN
Sbjct: 549 TYN 551



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 170/358 (47%), Gaps = 41/358 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           SFN L   L K     +  +++ ++ S G+ P L T+N +IN  CK G+V    +V  +I
Sbjct: 164 SFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKI 223

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +    PDA T+TSLI G C   ++ +A  +F ++   GC P+  TY+TLINGLC  G  
Sbjct: 224 FQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRI 283

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+++ EEM     E G+  +P   TY+     LC  G VD A  L   M  +  +P V
Sbjct: 284 GEAMDMLEEMT----EKGI--EPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSV 337

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
            TYT++I G   A     A  ++ +M+ +G+ PN VT+N ++NELC  G+   A ++ + 
Sbjct: 338 QTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDW 397

Query: 259 MIQIGVRPDASVYNTLMDGF-----------------------------------CLTGR 283
           M   G   +A  YN ++ G                                       G 
Sbjct: 398 MEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGY 457

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +N A      M+ + C  D  +Y  LI+G+CK  +++ A S + EML  GI P   TY
Sbjct: 458 LNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTY 515



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/298 (34%), Positives = 159/298 (53%), Gaps = 7/298 (2%)

Query: 47  GLFP-DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME 105
           GLF   LY++N L+    K   V+    V  +I  S   P  +TF ++I  LC + ++ E
Sbjct: 156 GLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQE 215

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           A  +F K+  F   PD FTYT+LI G CR      A  +F+ M          C P+++T
Sbjct: 216 AVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDG------CNPNSVT 269

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           YST+ +GLC EG + +A ++  +M ++ I P V TYT  I   C     ++A  L   M 
Sbjct: 270 YSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMG 329

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            +G  P+V T+  I++ L + GKM+ A  +   M++ G+ P+   YN L++  C  GR  
Sbjct: 330 KKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFG 389

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A ++F  ME +G + +  +Y  +I G     +IE A+ ++++ML  G  PTVVTYNT
Sbjct: 390 IALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNT 447



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 164/372 (44%), Gaps = 30/372 (8%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M++   +P  V +++ L   L         + + + +   G+ P +YTY + I+
Sbjct: 252 FEVFDRMVKDGCNPNSV-TYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPIS 310

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C +GRV     ++  + +   +P   T+T++I GL    ++  A  ++ K+   G  P
Sbjct: 311 SLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVP 370

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEM------ANGN-------GEFGVV--------- 158
           +  TY  LIN LC  G   +AL +F+ M      AN         G FG+          
Sbjct: 371 NTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVF 430

Query: 159 -------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                    P  +TY+T+     K G+++ A      MK+ N  PD  TY  LI GFC  
Sbjct: 431 NKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKG 490

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
              + A   F EM+  G+ PN  T+  +++  CK GK+D A  L E M + G       Y
Sbjct: 491 GKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETY 550

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N ++ G     R + A++    M   G   +  +Y  LING CKN     A  ++ EM  
Sbjct: 551 NAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEK 610

Query: 332 KGIRPTVVTYNT 343
           K   P   TY +
Sbjct: 611 KNCLPNAHTYTS 622



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 152/329 (46%), Gaps = 10/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L +    +  + ++ ++   GL P+  TYN LIN  C  GR      +
Sbjct: 335 PSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKI 394

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       +A T+  +IKGL     I +A  +F K+   G  P V TY TLI    +
Sbjct: 395 FDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLK 454

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A      M   N      C+PD  TY  +  G CK G +D A   F +M    I
Sbjct: 455 RGYLNNATRFLYMMKESN------CEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGI 508

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+  TYT++I G+C     + A  LF  M + G   ++ T+N I++ L K  +  EA +
Sbjct: 509 SPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEK 568

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M + G++P+   Y +L++G C     N A ++F  ME   C+ +  +Y  LI G C
Sbjct: 569 FCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLC 628

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +    EG +     +   G  PT+ TY+T
Sbjct: 629 Q----EGKVDAAERLTENGCEPTIDTYST 653



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 163/338 (48%), Gaps = 10/338 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F YM++     P   ++  L     K    D+  S F  +   G+ P+ +TY  +I+ +C
Sbjct: 464 FLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYC 523

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G++     +  R+  +  +    T+ ++I GL   +R  EA     K+   G +P+  
Sbjct: 524 KEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTI 583

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TYT+LINGLC+   T +A  +F EM   N      C P+A TY+++  GLC+EG VD A+
Sbjct: 584 TYTSLINGLCKNTATNLAFKIFHEMEKKN------CLPNAHTYTSLIYGLCQEGKVDAAE 637

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
               ++ +    P + TY++L+ G C     NEA  L   M ++G+ P++  +  ++   
Sbjct: 638 ----RLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAH 693

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           CK+ K+D A  +  LM   G +P   +Y  L+   C   R   A  +F S+       D+
Sbjct: 694 CKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDL 753

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             + +L++G  +  + +  +     M S+   P++ TY
Sbjct: 754 IVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTY 791



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 141/295 (47%), Gaps = 10/295 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  +     K    D  LSLF+R+   G    + TYN +I+   K  R S     
Sbjct: 510 PNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKF 569

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++      P+ +T+TSLI GLC  +    A  +F ++    C P+  TYT+LI GLC+
Sbjct: 570 CAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQ 629

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L E     NG     C+P   TYST+  GLC+EG  ++A +L   MK++ +
Sbjct: 630 EGKVDAAERLTE-----NG-----CEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGL 679

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P +  Y SL+   C +   + A  +F  M  +G QP++  + V++  LC   + +EA  
Sbjct: 680 SPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALN 739

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           + + +++     D  V+  L+DG    G  +   +    MES  C   + +Y IL
Sbjct: 740 IFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIIL 794



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 33/259 (12%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N +   L+K   +        ++   GL P+  TY  LIN  CK    +  F +   +
Sbjct: 549 TYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEM 608

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +    P+A T+TSLI GLC E ++  A     +L   GC+P + TY+TL++GLCR G +
Sbjct: 609 EKKNCLPNAHTYTSLIYGLCQEGKVDAAE----RLTENGCEPTIDTYSTLVSGLCREGRS 664

Query: 139 IVALNLFEEMANGN----------------GEFGVVC-------------KPDAITYSTI 169
             A  L E M                        V C             +P    Y  +
Sbjct: 665 NEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVL 724

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
              LC     ++A  +F  +  +  N D++ +T L+ G     D +        M  +  
Sbjct: 725 ICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNC 784

Query: 230 QPNVVTFNVIMNELCKNGK 248
            P++ T+ ++  EL K GK
Sbjct: 785 TPSLHTYIILARELSKVGK 803



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 3/130 (2%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           + PS    CS   L     K+   D  L +F  +   G  P L+ Y +LI   C + R  
Sbjct: 679 LSPSMEIYCS---LLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAE 735

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +   +L+  +  D + +T L+ GL  E            + +  C P + TY  L 
Sbjct: 736 EALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILA 795

Query: 130 NGLCRTGHTI 139
             L + G +I
Sbjct: 796 RELSKVGKSI 805


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 165/339 (48%), Gaps = 11/339 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ + G L      +    LF+ +   GL  D+YTY I+++ FCK G +      
Sbjct: 481 PDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     TP+ VT+T+LI       ++  A  LF  + + GC P++ TY+ LI+G C+
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600

Query: 135 TGHTIVALNLFEEMANGNGEFGVVC-----------KPDAITYSTITDGLCKEGFVDKAK 183
            G    A  +FE M        V             +P+ + Y  + DG CK   V++A+
Sbjct: 601 AGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEAR 660

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L   M  E   P+ + Y +LI G C     +EA+ +  EM + G    + T++ +++  
Sbjct: 661 KLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRY 720

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K  + D AS++L  M++    P+  +Y  ++DG C  G+ + A +L   ME  GC  +V
Sbjct: 721 FKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNV 780

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +Y  +I+G+ +  +IE  L L   M SKG+ P  VTY 
Sbjct: 781 VTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYR 819



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 170/356 (47%), Gaps = 32/356 (8%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC-KMGRVS 69
           +PSP     FN L      +  +     L K++   G  P    YNILI   C     +S
Sbjct: 369 YPSPKI---FNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLS 425

Query: 70  PGFVVLGR-----ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
              + L       +L +    + +  +S  + LC+  +  +A ++  ++   G  PD  T
Sbjct: 426 CHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y+ ++  LC      +A  LFEEM  G    G+V   D  TY+ + D  CK G +++A++
Sbjct: 486 YSKVLGYLCNASKMELAFLLFEEMKRG----GLVA--DVYTYTIMVDSFCKAGLIEQARK 539

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
            F +M++    P+VVTYT+LI  +  A   + A  LF  M+ +G  PN+VT++ +++  C
Sbjct: 540 WFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599

Query: 245 KNGKMDEASRLLELMI-----------------QIGVRPDASVYNTLMDGFCLTGRVNRA 287
           K G+M++A ++ E M                      RP+  +Y  L+DGFC   RV  A
Sbjct: 600 KAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEA 659

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++L  +M   GC  +   Y  LI+G CK  +++ A  + +EM   G   T+ TY++
Sbjct: 660 RKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSS 715



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 167/408 (40%), Gaps = 81/408 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L     K K       LF+ + S G  P++ TY+ LI+  CK G++     +
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQI 610

Query: 75  LGRILRSCFTPDA-----------------VTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
             R+  S   PD                  V + +L+ G C   R+ EA  L   +   G
Sbjct: 611 FERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEG 670

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG-------------NGEFGV------- 157
           C+P+   Y  LI+GLC+ G    A  +  EM+               +  F V       
Sbjct: 671 CEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 730

Query: 158 ---------VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                     C P+ + Y+ + DGLCK G  D+A +L   M+++   P+VVTYT++I GF
Sbjct: 731 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 790

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI------ 262
                      L   M  +GV PN VT+ V+++  CKNG +D A  LLE M Q       
Sbjct: 791 GRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHA 850

Query: 263 -GVR--------------------------PDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            G R                          P  S+Y  L+D      R+  A  L   + 
Sbjct: 851 AGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVA 910

Query: 296 S-NGCMRDVFS-YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           + +  + D  S Y  LI   C   +++ A  L+SEM  KG+ P + T+
Sbjct: 911 TFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTF 958



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 150/320 (46%), Gaps = 10/320 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           + M    P    ++ L   L K    D    +   ++  G    LYTY+ LI+ + K+ R
Sbjct: 666 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKR 725

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 VL ++L +   P+ V +T +I GLC   +  EA  L   +   GC+P+V TYT 
Sbjct: 726 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 785

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I+G  R G     L L E M    G  GV   P+ +TY  + D  CK G +D A  L  
Sbjct: 786 MIDGFGRIGKIETCLELLERM----GSKGVA--PNYVTYRVLIDHCCKNGALDVAHNLLE 839

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +MK  +       Y  +I GF    ++ E+  L  E+      P +  + ++++ L K  
Sbjct: 840 EMKQTHWPTHAAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQ 897

Query: 248 KMDEASRLLELMIQIGVR--PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           +++ A RLLE +          +S YN+L++  CL  +V++A  LF  M   G + ++ +
Sbjct: 898 RLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQT 957

Query: 306 YGILINGYCKNKEIEGALSL 325
           +  LI G  +N +I  AL L
Sbjct: 958 FCSLIKGLFRNSKISEALLL 977



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 155/370 (41%), Gaps = 50/370 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K    D+   + + ++   L  D +T        CK+G+      +
Sbjct: 233 PSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREALTL 292

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL------ 128
           +       F PD V +T LI GLC  S   EA     ++RA  C P+V TY+TL      
Sbjct: 293 MET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349

Query: 129 -----------------------------INGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                                        ++  C +G    A  L ++M           
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH------ 403

Query: 160 KPDAITYSTITDGLCKEG------FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
            P  + Y+ +   +C +        ++ A++ + +M    +  + +  +S  R  C A  
Sbjct: 404 TPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGK 463

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +  EM+ QG  P+  T++ ++  LC   KM+ A  L E M + G+  D   Y  
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++D FC  G + +A++ F  M   GC  +V +Y  LI+ Y K K++  A  L+  MLS+G
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 334 IRPTVVTYNT 343
             P +VTY+ 
Sbjct: 584 CLPNIVTYSA 593



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 167/429 (38%), Gaps = 100/429 (23%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKH----YDTVLSLFKRLNSIGLFPDLYTY------- 55
           +LR+   P  V SF +  G     KH    Y+ ++ L  R +   +  +L          
Sbjct: 138 VLRLIERPSAVISFFVWAGRQIGYKHTSPVYNALVDLIVRDDDEKVPEELLQQIRDDDKE 197

Query: 56  ------NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL----CAES---- 101
                 N+L+  +C+ G  S     LGR+    F P   T+  LI+      C +S    
Sbjct: 198 VFGEFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLV 257

Query: 102 -RIMEAAAL----FTKLRAFG---CK-----------------PDVFTYTTLINGLCRTG 136
            R M  A L    FT LR +    CK                 PD   YT LI+GLC   
Sbjct: 258 HREMSLANLRMDGFT-LRCYAYSLCKVGKWREALTLMETENFVPDTVFYTKLISGLCEA- 315

Query: 137 HTIVALNLFEE-MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                 +LFEE M   N      C P+ +TYST+  G   +  + + K +   M  E   
Sbjct: 316 ------SLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCY 369

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE------------- 242
           P    + SL+  +C + D + A  L  +M+  G  P  V +N+++               
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLL 429

Query: 243 ----------------------------LCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
                                       LC  GK ++A  ++  MI  G  PD S Y+ +
Sbjct: 430 ELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKV 489

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +   C   ++  A  LF  M+  G + DV++Y I+++ +CK   IE A   ++EM   G 
Sbjct: 490 LGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGC 549

Query: 335 RPTVVTYNT 343
            P VVTY  
Sbjct: 550 TPNVVTYTA 558



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 2/108 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLN--SIGLFPDLYTYNILINCFCKMGRVSP 70
           + P +  + +L   L K +  +  L L + +   S  L     TYN LI   C   +V  
Sbjct: 879 TAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDK 938

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
            F +   + +    P+  TF SLIKGL   S+I EA  L   +    C
Sbjct: 939 AFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLLDFISHMVC 986


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 177/338 (52%), Gaps = 11/338 (3%)

Query: 8   LRMHPSPPPVCSFNILFGC---LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           ++++   P V S+N L      L  N       ++ K +    + P+L T+NILI+ F K
Sbjct: 249 MKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWK 308

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
              +     V   +L     P+ +++ SLI GLC   +I EA ++  K+ + G +P++ T
Sbjct: 309 DDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLIT 368

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y  LING C+      AL++F  +  G G       P    Y+ + D  CK G +D    
Sbjct: 369 YNALINGFCKNDMLKEALDMFGSVK-GQGAV-----PTTRMYNMLIDAYCKLGKIDDGFA 422

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L  +M+ E I PDV TY  LI G C   +   AK LF ++  +G+ P++VTF+++M   C
Sbjct: 423 LKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYC 481

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR-DV 303
           + G+  +A+ LL+ M ++G++P    YN +M G+C  G +  A  +   ME    +R +V
Sbjct: 482 RKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNV 541

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            SY +L+ GY +  ++E A  L +EML KG+ P  +TY
Sbjct: 542 ASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 176/324 (54%), Gaps = 11/324 (3%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           ++   L +N+  D V  ++K +    + P+++T+N++IN  CK G+++    V+  +   
Sbjct: 194 LMIALLKENRSAD-VEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVY 252

Query: 82  CFTPDAVTFTSLIKGLC---AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
             +P+ V++ +LI G C      ++ +A A+  ++      P++ T+  LI+G  +  + 
Sbjct: 253 GCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNL 312

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             ++ +F+EM + +       KP+ I+Y+++ +GLC  G + +A  +  KM    + P++
Sbjct: 313 PGSMKVFKEMLDQD------VKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNL 366

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           +TY +LI GFC  +   EA  +F  +  QG  P    +N++++  CK GK+D+   L E 
Sbjct: 367 ITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEE 426

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + G+ PD   YN L+ G C  G +  AK+LF  + S G + D+ ++ IL+ GYC+  E
Sbjct: 427 MEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGE 485

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
              A  L  EM   G++P  +TYN
Sbjct: 486 SRKAAMLLKEMSKMGLKPRHLTYN 509



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 164/325 (50%), Gaps = 10/325 (3%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           ++L    A N  ++     FKR    G      +   L+    K  R +    V   ++R
Sbjct: 157 DMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIR 216

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR---TGH 137
               P+  TF  +I  LC   ++ +A  +   ++ +GC P+V +Y TLI+G C+    G 
Sbjct: 217 RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGK 276

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A  + +EM   +        P+  T++ + DG  K+  +  + ++F +M D+++ P+
Sbjct: 277 MYKADAVLKEMVEND------VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPN 330

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V++Y SLI G C     +EA  +  +M+  GVQPN++T+N ++N  CKN  + EA  +  
Sbjct: 331 VISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFG 390

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            +   G  P   +YN L+D +C  G+++    L   ME  G + DV +Y  LI G C+N 
Sbjct: 391 SVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNG 450

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYN 342
            IE A  L+ ++ SKG+ P +VT++
Sbjct: 451 NIEAAKKLFDQLTSKGL-PDLVTFH 474



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 176/344 (51%), Gaps = 12/344 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++  M+R     P V +FN++   L K    +    + + +   G  P++ +YN LI+ +
Sbjct: 210 VYKEMIR-RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGY 268

Query: 63  CKMG---RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           CK+G   ++     VL  ++ +  +P+  TF  LI G   +  +  +  +F ++     K
Sbjct: 269 CKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVK 328

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           P+V +Y +LINGLC  G    A+++ ++M +     GV  +P+ ITY+ + +G CK   +
Sbjct: 329 PNVISYNSLINGLCNGGKISEAISMRDKMVSA----GV--QPNLITYNALINGFCKNDML 382

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
            +A ++F  +K +   P    Y  LI  +C     ++   L  EM  +G+ P+V T+N +
Sbjct: 383 KEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCL 442

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  LC+NG ++ A +L + +   G+ PD   ++ LM+G+C  G   +A  L   M   G 
Sbjct: 443 IAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGL 501

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEM-LSKGIRPTVVTYN 342
                +Y I++ GYCK   ++ A ++ ++M   + +R  V +YN
Sbjct: 502 KPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYN 545



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 151/296 (51%), Gaps = 8/296 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FNIL     K+ +    + +FK +    + P++ +YN LIN  C  G++S    +
Sbjct: 294 PNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISM 353

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++ +   P+ +T+ +LI G C    + EA  +F  ++  G  P    Y  LI+  C+
Sbjct: 354 RDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCK 413

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L EEM       G+V  PD  TY+ +  GLC+ G ++ AK+LF ++  + +
Sbjct: 414 LGKIDDGFALKEEME----REGIV--PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL 467

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+VT+  L+ G+C   +  +A  L  EM   G++P  +T+N++M   CK G +  A+ 
Sbjct: 468 -PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATN 526

Query: 255 L-LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           +  ++  +  +R + + YN L+ G+   G++  A  L   M   G + +  +Y I+
Sbjct: 527 MRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     KN      L +F  +   G  P    YN+LI+ +CK+G++  GF +
Sbjct: 364 PNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFAL 423

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + R    PD  T+  LI GLC    I  A  LF +L + G  PD+ T+  L+ G CR
Sbjct: 424 KEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCR 482

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDEN 193
            G +  A  L +EM+    + G+  KP  +TY+ +  G CKEG +  A  +  +M K+  
Sbjct: 483 KGESRKAAMLLKEMS----KMGL--KPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERR 536

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +  +V +Y  L++G+       +A  L  EM+++G+ PN +T+ ++  E+   G
Sbjct: 537 LRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQG 590



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 135/283 (47%), Gaps = 9/283 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  ML      P V S+N L   L         +S+  ++ S G+ P+L TYN LIN F
Sbjct: 318 VFKEMLD-QDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGF 376

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK   +     + G +      P    +  LI   C   +I +  AL  ++   G  PDV
Sbjct: 377 CKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDV 436

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LI GLCR G+   A  LF+++ +          PD +T+  + +G C++G   KA
Sbjct: 437 GTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-------LPDLVTFHILMEGYCRKGESRKA 489

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM-MDQGVQPNVVTFNVIMN 241
             L  +M    + P  +TY  +++G+C   +   A  +  +M  ++ ++ NV ++NV++ 
Sbjct: 490 AMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQ 549

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
              + GK+++A+ LL  M++ G+ P+   Y  + +     G V
Sbjct: 550 GYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFV 592



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 84/131 (64%), Gaps = 3/131 (2%)

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           + + ++ EM+ + +QPNV TFNV++N LCK GKM++A  ++E M   G  P+   YNTL+
Sbjct: 206 DVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLI 265

Query: 276 DGFCL---TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           DG+C     G++ +A  +   M  N    ++ ++ ILI+G+ K+  + G++ ++ EML +
Sbjct: 266 DGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQ 325

Query: 333 GIRPTVVTYNT 343
            ++P V++YN+
Sbjct: 326 DVKPNVISYNS 336


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 173/330 (52%), Gaps = 8/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN++   + K    D  + +F+ +      PD+YTY  L++  CK  R+     +
Sbjct: 197 PNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSL 256

Query: 75  LGRI-LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L  + +  CF P  VTF  LI GLC +  +  AA L   +   GC P+  TY TLI+GLC
Sbjct: 257 LDEMQIDGCF-PSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLC 315

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G    A++L + M +        C P+ +TY TI +GL K+G       +   M++  
Sbjct: 316 LKGKLEKAISLLDRMVSSK------CVPNVVTYGTIINGLVKQGRALDGACVLALMEERG 369

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              +   Y++LI G        EA  LF EM  +G + N + ++ +++ LC++GK D+A 
Sbjct: 370 YCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAV 429

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +L  M   G  P+A   ++LM GF   G  +RA E++  M  +   ++   Y +LI+G 
Sbjct: 430 EVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGL 489

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK+ +++ A+ ++++ML KG +P VV Y++
Sbjct: 490 CKDGKVKEAMMVWTQMLGKGCKPDVVAYSS 519



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 172/329 (52%), Gaps = 9/329 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P PV +FN+L   L K         L   +   G  P+  TYN LI+  C  G++     
Sbjct: 267 PSPV-TFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAIS 325

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L R++ S   P+ VT+ ++I GL  + R ++ A +   +   G   + + Y+TLI+GL 
Sbjct: 326 LLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLF 385

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G +  A++LF+EM     E       + I YS + DGLC++G  D A E+  +M ++ 
Sbjct: 386 KEGKSQEAMHLFKEMTVKGYEL------NTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKG 439

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+  T +SL++GF  A + + A  ++ +M       N V ++V+++ LCK+GK+ EA 
Sbjct: 440 CTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAM 499

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG--CMRDVFSYGILIN 311
            +   M+  G +PD   Y+++++G  + G V  A +L+  M   G     DV +Y IL+N
Sbjct: 500 MVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLN 559

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             CK   I  A+ L + ML +G  P +VT
Sbjct: 560 TLCKQSSISRAIDLLNSMLDRGCDPDLVT 588



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 134/258 (51%), Gaps = 6/258 (2%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
            +P+ +TF  +IK +C    + +A  +F  +    C+PDV+TY TL++GLC+      A+
Sbjct: 195 ISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAV 254

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
           +L +EM          C P  +T++ + +GLCK+G + +A +L   M  +   P+ VTY 
Sbjct: 255 SLLDEMQIDG------CFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYN 308

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           +LI G C      +A  L   M+     PNVVT+  I+N L K G+  + + +L LM + 
Sbjct: 309 TLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEER 368

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G   +  VY+TL+ G    G+   A  LF  M   G   +   Y  +I+G C++ + + A
Sbjct: 369 GYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDA 428

Query: 323 LSLYSEMLSKGIRPTVVT 340
           + + SEM +KG  P   T
Sbjct: 429 VEVLSEMTNKGCTPNAYT 446



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 144/298 (48%), Gaps = 8/298 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L      +  +SL  R+ S    P++ TY  +IN   K GR   G  V
Sbjct: 302 PNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACV 361

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +    +  +   +++LI GL  E +  EA  LF ++   G + +   Y+ +I+GLCR
Sbjct: 362 LALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCR 421

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ +  EM N        C P+A T S++  G  + G   +A E++  M   N 
Sbjct: 422 DGKPDDAVEVLSEMTNKG------CTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNF 475

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + V Y+ LI G C      EA  ++ +M+ +G +P+VV ++ ++N L   G +++A +
Sbjct: 476 TQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQ 535

Query: 255 LLELMIQIG--VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           L   M+  G   +PD   YN L++  C    ++RA +L  SM   GC  D+ +  I +
Sbjct: 536 LYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFL 593



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 144/286 (50%), Gaps = 21/286 (7%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGR-------ILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           T+  LIN +  +G       VL R       I   CF    V F +  K    E    +A
Sbjct: 92  TFYSLINNYANLGDFKSLEKVLDRMKCEKRVIFEKCFI---VIFKAYGKAHLPE----KA 144

Query: 107 AALFTKLR-AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
             LF ++   F CK    ++ +++N + + G    AL  +  +    G  GV   P+ +T
Sbjct: 145 VDLFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHVI---GAKGVSISPNVLT 201

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +   +CK G VD A ++F  M      PDV TY +L+ G C A+  +EA  L  EM 
Sbjct: 202 FNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQ 261

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G  P+ VTFNV++N LCK G +  A++L++ M   G  P+   YNTL+ G CL G++ 
Sbjct: 262 IDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLE 321

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKN-KEIEGA--LSLYSE 328
           +A  L   M S+ C+ +V +YG +ING  K  + ++GA  L+L  E
Sbjct: 322 KAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEE 367



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 122/258 (47%), Gaps = 9/258 (3%)

Query: 89  TFTSLIKGLCAESRIMEAAALFTKL---RAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           +F S++  +  E     A   +  +   +     P+V T+  +I  +C+ G    A+ +F
Sbjct: 163 SFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVF 222

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
            +M          C+PD  TY T+ DGLCK   +D+A  L  +M+ +   P  VT+  LI
Sbjct: 223 RDMTIRK------CEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLI 276

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            G C   D + A  L   M  +G  PN VT+N +++ LC  GK+++A  LL+ M+     
Sbjct: 277 NGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCV 336

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           P+   Y T+++G    GR      +   ME  G   + + Y  LI+G  K  + + A+ L
Sbjct: 337 PNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHL 396

Query: 326 YSEMLSKGIRPTVVTYNT 343
           + EM  KG     + Y+ 
Sbjct: 397 FKEMTVKGYELNTIVYSA 414



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 129/266 (48%), Gaps = 18/266 (6%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           ++ +   L ++   D  + +   + + G  P+ YT + L+  F + G       V   + 
Sbjct: 412 YSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMA 471

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           +  FT + V ++ LI GLC + ++ EA  ++T++   GCKPDV  Y+++INGL   G   
Sbjct: 472 KHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVE 531

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A+ L+ EM       G   +PD +TY+ + + LCK+  + +A +L   M D   +PD+V
Sbjct: 532 DAMQLYNEMLCQ----GPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLV 587

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T T  +R             +  E +D   Q      + ++  L K  ++  AS+++E+M
Sbjct: 588 TCTIFLR-------------MLREKLDPP-QDGREFLDELVVRLLKRQRVLGASKIVEVM 633

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVN 285
           +Q  + P  S +  +++  C   +V 
Sbjct: 634 LQKLLPPKHSTWARVVENLCKPKKVQ 659



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 8/206 (3%)

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF---LKMKDENINPD 197
           A++LF+ MA    EF   CK    +++++ + + +EG   +A E +   +  K  +I+P+
Sbjct: 144 AVDLFDRMA---CEFE--CKRTGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPN 198

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V+T+  +I+  C     ++A  +F +M  +  +P+V T+  +M+ LCK  ++DEA  LL+
Sbjct: 199 VLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLD 258

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M   G  P    +N L++G C  G ++RA +L  +M   GC+ +  +Y  LI+G C   
Sbjct: 259 EMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKG 318

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++E A+SL   M+S    P VVTY T
Sbjct: 319 KLEKAISLLDRMVSSKCVPNVVTYGT 344


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 175/402 (43%), Gaps = 60/402 (14%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             ++  M+     PP   +F +    L +    D  L+L + +   G  PD   Y  +I+
Sbjct: 159 LALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIH 218

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  G V+    +L  +L      D  TF  +++G+C   R+ EAA L  ++   GC P
Sbjct: 219 ALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMP 278

Query: 121 DVFTYTTLINGLCRTGHT---------IVALN--LFEEMANG---NGEFGVV-------- 158
            V TY  L+ GLCR             +  LN  LF  +  G    G+            
Sbjct: 279 GVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMG 338

Query: 159 ---CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
              C+PDA TYS +  GLCK G +  A  L  +M+ +   P+VVTYT ++  FC    W+
Sbjct: 339 LKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 398

Query: 216 EAKCLFIEM------------------------MD-----------QGVQPNVVTFNVIM 240
           + + L  EM                        MD           QG  P++ ++N I+
Sbjct: 399 DTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 458

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LC N +M+EA  + E +++ GV  +   YNT++      GR   A  L   M  +GC 
Sbjct: 459 YHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCS 518

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            DV SY  LI   CK+  ++ +L L  EM  KGI+P  V+YN
Sbjct: 519 LDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 560



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 170/327 (51%), Gaps = 8/327 (2%)

Query: 17  VCSFN-ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V  FN ++ GCLA+ K  +    L++ +   G  PD +TY+IL++  CK+GR+     +L
Sbjct: 311 VVLFNTVIGGCLAEGKLAEAT-ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL 369

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             + +  F P+ VT+T ++   C      +  AL  ++ A G   +   Y  +I  LC+ 
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKD 429

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           G    A+ L +EM +        C PD  +Y+TI   LC    +++A+ +F  + +E + 
Sbjct: 430 GRMDEAMGLIQEMRSQG------CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVV 483

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
            + +TY ++I        W +A  L  EM+  G   +VV++N ++  +CK+G +D +  L
Sbjct: 484 ANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVL 543

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           LE M + G++P+   YN L+   C   RV  A EL   M + G   D+ +Y  LING CK
Sbjct: 544 LEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCK 603

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
              +  AL+L  ++ ++ + P ++TYN
Sbjct: 604 MGWMHAALNLLEKLHNENVHPDIITYN 630



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 173/364 (47%), Gaps = 46/364 (12%)

Query: 22  ILFGCLAKNKHYDTVLS-------------LFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           +L GC A    +D V+              L  R+ + G  P + TY  L+   C++ + 
Sbjct: 237 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 296

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +LGR+       + V F ++I G  AE ++ EA  L+  +   GC+PD  TY+ L
Sbjct: 297 DEARAMLGRVPEL----NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 352

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVV---------CKP------------------ 161
           ++GLC+ G    A+ L  EM        VV         CK                   
Sbjct: 353 MHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 412

Query: 162 --DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
             ++  Y+ +   LCK+G +D+A  L  +M+ +  NPD+ +Y ++I   C      EA+ 
Sbjct: 413 TLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEH 472

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +F  ++++GV  N +T+N I++ L ++G+  +A RL + MI  G   D   YN L+   C
Sbjct: 473 MFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMC 532

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G V+R+  L   M   G   +  SY ILI+  CK + +  AL L  +ML++G+ P +V
Sbjct: 533 KDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIV 592

Query: 340 TYNT 343
           TYNT
Sbjct: 593 TYNT 596



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 6/211 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +CS+N +   L  N+  +    +F+ L   G+  +  TYN +I+   + GR      +
Sbjct: 449 PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 508

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++    + D V++  LIK +C +  +  +  L  ++   G KP+  +Y  LI+ LC+
Sbjct: 509 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L ++M N          PD +TY+T+ +GLCK G++  A  L  K+ +EN+
Sbjct: 569 ERRVRDALELSKQMLNQG------LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 622

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +PD++TY  LI   C     ++A  L    M
Sbjct: 623 HPDIITYNILISWHCKVRLLDDAAMLLNRAM 653



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 10/204 (4%)

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVV 199
           AL+L +++      FGV  +P   +Y+ +   L +      A  L+ +M   + + P   
Sbjct: 122 ALHLLDQLPR---RFGV--QPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTF 176

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T+    R  C     +EA  L   M   G  P+ V +  +++ LC  G + EA+ LL  M
Sbjct: 177 TFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEM 236

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           + +G   D + ++ ++ G C  GRV  A  L   M + GCM  V +YG L+ G C+ ++ 
Sbjct: 237 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 296

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           + A +    ML +     VV +NT
Sbjct: 297 DEARA----MLGRVPELNVVLFNT 316



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+NIL   L K +     L L K++ + GL PD+ TYN LIN  CKMG +     +
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNL 613

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           L ++      PD +T+  LI   C    + +AA L  +  A  C
Sbjct: 614 LEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVC 657


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 166/342 (48%), Gaps = 20/342 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +   L      +    LF+ +   GL  D+YTY I+++ FCK G +      
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     TP+ VT+T+LI       ++  A  LF  + + GC P++ TY+ LI+G C+
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600

Query: 135 TGHTIVALNLFEEMA---------------NGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
            G    A  +FE M                + N E     +P+ +TY  + DG CK   V
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSE-----RPNVVTYGALLDGFCKSHRV 655

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           ++A++L   M  E   P+ + Y +LI G C     +EA+ +  EM + G    + T++ +
Sbjct: 656 EEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSL 715

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++   K  + D AS++L  M++    P+  +Y  ++DG C  G+ + A +L   ME  GC
Sbjct: 716 IDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGC 775

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +V +Y  +I+G+    +IE  L L   M SKG+ P  VTY
Sbjct: 776 QPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 168/355 (47%), Gaps = 31/355 (8%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC------K 64
           +PSP     FN L      +  +     L K++   G  P    YNILI   C       
Sbjct: 369 YPSPKI---FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
              +         +L +    + +  +S  + LC+  +  +A ++  ++   G  PD  T
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y+ ++N LC      +A  LFEEM  G    G+V   D  TY+ + D  CK G +++A++
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRG----GLVA--DVYTYTIMVDSFCKAGLIEQARK 539

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
            F +M++    P+VVTYT+LI  +  A   + A  LF  M+ +G  PN+VT++ +++  C
Sbjct: 540 WFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599

Query: 245 KNGKMDEASRLLELMI----------------QIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           K G++++A ++ E M                     RP+   Y  L+DGFC + RV  A+
Sbjct: 600 KAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEAR 659

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +L  +M   GC  +   Y  LI+G CK  +++ A  + +EM   G   T+ TY++
Sbjct: 660 KLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 168/407 (41%), Gaps = 80/407 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L     K K       LF+ + S G  P++ TY+ LI+  CK G+V     +
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQI 610

Query: 75  LGRILRSCFTPDA----------------VTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
             R+  S   PD                 VT+ +L+ G C   R+ EA  L   +   GC
Sbjct: 611 FERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGC 670

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANG-------------NGEFGV-------- 157
           +P+   Y  LI+GLC+ G    A  +  EM+               +  F V        
Sbjct: 671 EPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASK 730

Query: 158 --------VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
                    C P+ + Y+ + DGLCK G  D+A +L   M+++   P+VVTYT++I GF 
Sbjct: 731 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFG 790

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI------- 262
                     L   M  +GV PN VT+ V+++  CKNG +D A  LLE M Q        
Sbjct: 791 MIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTA 850

Query: 263 GVR--------------------------PDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           G R                          P  SVY  L+D      R+  A  L   + +
Sbjct: 851 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 910

Query: 297 -NGCMRDVFS-YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +  + D  S Y  LI   C   ++E A  L+SEM  KG+ P + ++
Sbjct: 911 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSF 957



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 156/370 (42%), Gaps = 50/370 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L     K    D+   + + ++   L  D +T        CK+G+      +
Sbjct: 233 PSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL 292

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT------- 127
              +    F PD V +T LI GLC  S   EA     ++RA  C P+V TY+T       
Sbjct: 293 ---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349

Query: 128 ----------------------------LINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                                       L++  C +G    A  L ++M           
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH------ 403

Query: 160 KPDAITYSTITDGLCKE------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
            P  + Y+ +   +C +        +D A++ + +M    +  + +  +S  R  C A  
Sbjct: 404 MPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 463

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +  EM+ QG  P+  T++ ++N LC   KM+ A  L E M + G+  D   Y  
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++D FC  G + +A++ F  M   GC  +V +Y  LI+ Y K K++  A  L+  MLS+G
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583

Query: 334 IRPTVVTYNT 343
             P +VTY+ 
Sbjct: 584 CLPNIVTYSA 593



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 148/320 (46%), Gaps = 10/320 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           + M    P    ++ L   L K    D    +   ++  G    LYTY+ LI+ + K+ R
Sbjct: 665 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 724

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
                 VL ++L +   P+ V +T +I GLC   +  EA  L   +   GC+P+V TYT 
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 784

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I+G    G     L L E M    G  GV   P+ +TY  + D  CK G +D A  L  
Sbjct: 785 MIDGFGMIGKIETCLELLERM----GSKGVA--PNYVTYRVLIDHCCKNGALDVAHNLLE 838

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +MK  +       Y  +I GF    ++ E+  L  E+      P +  + ++++ L K  
Sbjct: 839 EMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896

Query: 248 KMDEASRLLELMIQIGVR--PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           +++ A RLLE +          +S YN+L++  CL  +V  A +LF  M   G + ++ S
Sbjct: 897 RLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQS 956

Query: 306 YGILINGYCKNKEIEGALSL 325
           +  LI G  +N +I  AL L
Sbjct: 957 FCSLIKGLFRNSKISEALLL 976



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 149/359 (41%), Gaps = 32/359 (8%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKH----YDTVLSLFKRLNSIGLFPDLYTY------- 55
           +LR+   P  V SF +  G     KH    Y+ ++ L  R +   +  +           
Sbjct: 138 VLRLIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKE 197

Query: 56  ------NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
                 N+L+   C+ G  S     LGR+    F P   T+  LI+      R+  A+ +
Sbjct: 198 VFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLI 257

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             ++     + D FT       LC+ G    AL L E       E  V   PD + Y+ +
Sbjct: 258 HREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE------TENFV---PDTVFYTKL 308

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GLC+    ++A +   +M+  +  P+VVTY++L+ G          K +   MM +G 
Sbjct: 309 ISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGC 368

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR------ 283
            P+   FN +++  C +G    A +LL+ M++ G  P   VYN L+   C          
Sbjct: 369 YPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDL 428

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++ A++ +  M + G + +  +        C   + E A S+  EM+ +G  P   TY+
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYS 487



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 11/231 (4%)

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE-FGVVCKPDAITYSTITDG 172
           R  G K     Y  L++ + R     V     +++ + + E FG          + +   
Sbjct: 157 RQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEF-------LNVLVRK 209

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            C+ G    A E   ++KD    P   TY  LI+ F  A+  + A  +  EM    ++ +
Sbjct: 210 HCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMD 269

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
             T       LCK GK  EA  L+E        PD   Y  L+ G C       A +   
Sbjct: 270 GFTLRCFAYSLCKVGKWREALTLVETE---NFVPDTVFYTKLISGLCEASLFEEAMDFLN 326

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M +  C+ +V +Y  L+ G    K++     + + M+ +G  P+   +N+
Sbjct: 327 RMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377



 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 2/108 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLN--SIGLFPDLYTYNILINCFCKMGRVSP 70
           + P +  + +L   L K +  +  L L + +   S  L     TYN LI   C   +V  
Sbjct: 878 TAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVET 937

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
            F +   + +    P+  +F SLIKGL   S+I EA  L   +    C
Sbjct: 938 AFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMVC 985


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 174/334 (52%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           +++ H    P  +   +   L K K++  V   ++     G    LY +NIL++ F K G
Sbjct: 91  LIKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +L+ G      + E   L   ++A G + DV+TY+
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM +     G+V  P+ +T++T+ DG CK   VD A E++
Sbjct: 211 VLINGLCKASKMDDANELFDEMLDN----GLV--PNGVTFTTLIDGHCKNRRVDVAMEIY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  ++++PD++TY +LI G C   D  +A+ L  EM  +G++P+ +T+  +++  CK 
Sbjct: 265 KQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A    + MI+  +R D   Y  L+ G C  GR   A+++   M S G   ++ +Y
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +C+  ++   L L  EM   G  P+VVT
Sbjct: 385 TMIINEFCEKGDVWTGLKLLKEMQRDGYMPSVVT 418



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 99/178 (55%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +   ++ P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQ +V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C   RV+
Sbjct: 199 ASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 VAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 90/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +  +K+        T   ++        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLIKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+   K G++  A  + + + +  +RP    +NTLM+G+ 
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L  +M+++G   DV++Y +LING CK  +++ A  L+ EML  G+ P  V
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
 gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 159/294 (54%), Gaps = 6/294 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD+ TYNILIN  CK G+       L    +    P+ +++  LI+  C       A+ L
Sbjct: 343 PDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKL 402

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             ++   GCKPD+ TY  LI+GL  +GH   A+N+  ++ +     GV   PDA  Y+ +
Sbjct: 403 LLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDR----GV--SPDAAIYNML 456

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GLCK G    AK LF +M D NI PD   Y +LI GF  + D++EA+ +F   +++GV
Sbjct: 457 MSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGV 516

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           + +VV  N ++   C++G +DEA   +  M +  + PD   Y+T++DG+     +  A +
Sbjct: 517 KVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIK 576

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +F  ME N C  +V +Y  LING+C   + + A   + EM  + + P VVTY T
Sbjct: 577 IFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTT 630



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 183/371 (49%), Gaps = 31/371 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I+DY++ ++ S P V + N L   L K++       ++  +   G   D Y+  IL+   
Sbjct: 156 IYDYVVELYDSVPDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGM 215

Query: 63  CKMGRVSPGF-VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           C  G+V  G  ++ GR  + C  P+ V + ++I G C    I  A  +F +L+  G  P 
Sbjct: 216 CNEGKVEVGRKLIEGRWGKGCI-PNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPT 274

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV----------------------- 158
           + T+ T+ING C+ G  + +  L  E+        V                        
Sbjct: 275 LETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIG 334

Query: 159 ------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                 CKPD  TY+ + + LCKEG  + A     +   + + P+ ++Y  LI+ +C + 
Sbjct: 335 WIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSK 394

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           +++ A  L ++M ++G +P++VT+ ++++ L  +G MD+A  +   +I  GV PDA++YN
Sbjct: 395 EYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYN 454

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            LM G C TGR   AK LF  M     + D + Y  LI+G+ ++ + + A  ++S  + K
Sbjct: 455 MLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEK 514

Query: 333 GIRPTVVTYNT 343
           G++  VV +N 
Sbjct: 515 GVKVDVVHHNA 525



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 157/329 (47%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++NIL   L K    +  +      +  GL P+  +Y  LI  +CK         +
Sbjct: 343 PDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKL 402

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT+  LI GL     + +A  +  KL   G  PD   Y  L++GLC+
Sbjct: 403 LLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCK 462

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG  + A  LF EM + N        PDA  Y+T+ DG  + G  D+A+++F    ++ +
Sbjct: 463 TGRFLPAKLLFSEMLDRN------ILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGV 516

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             DVV + ++I+GFC +   +EA      M ++ + P+  T++ I++   K   M  A +
Sbjct: 517 KVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIK 576

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M +   +P+   Y +L++GFC  G    A+E F  M+    + +V +Y  LI    
Sbjct: 577 IFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLA 636

Query: 315 KNKE-IEGALSLYSEMLSKGIRPTVVTYN 342
           K    +E A+  +  M++    P  VT+N
Sbjct: 637 KESSTLEKAVYYWELMMTNKCVPNEVTFN 665



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 161/342 (47%), Gaps = 21/342 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++ IL   L  + H D  +++  +L   G+ PD   YN+L++  CK GR  P  ++
Sbjct: 413 PDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLL 472

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     PDA  + +LI G        EA  +F+     G K DV  +  +I G CR
Sbjct: 473 FSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCR 532

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    AL     M   N E  V   PD  TYSTI DG  K+  +  A ++F  M+    
Sbjct: 533 SGMLDEALACMNRM---NEEHLV---PDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKC 586

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK-MDEAS 253
            P+VVTYTSLI GFC   D+  A+  F EM  + + PNVVT+  ++  L K    +++A 
Sbjct: 587 KPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAV 646

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFC--LTGRV-------NRAK-----ELFVSMESNGC 299
              ELM+     P+   +N L+ GF    +G+V       N  +     E F  M+S+G 
Sbjct: 647 YYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDGW 706

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                +Y   +   C +  ++ A     +M+ KG  P  V++
Sbjct: 707 SDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSF 748



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ-- 230
           L +    ++ +++   +++EN+       + ++  +  +   ++A    +E+ D  V+  
Sbjct: 109 LARYRIFNEIEDVLGNLRNENVKLTHEALSHVLHAYAESGSLSKA----VEIYDYVVELY 164

Query: 231 ---PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
              P+V+  N +++ L K+ ++ +A ++ + M   G   D      L+ G C  G+V   
Sbjct: 165 DSVPDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVG 224

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++L       GC+ ++  Y  +I GYCK  +IE A  ++ E+  KG  PT+ T+ T
Sbjct: 225 RKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGT 280



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
             F R+ S G       YN  + C C  G V    +   ++++  F+PD V+F +++ G 
Sbjct: 696 EFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAILHGF 755

Query: 98  C 98
           C
Sbjct: 756 C 756


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 167/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++  G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM+ +G+ P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M + G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYMPSVVT 418



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G M  V +
Sbjct: 367 KMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G    ++ +  L++   + G   +A ++F+ +   +       +P  ++++T+ +G  K 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWS------LRPSVVSFNTLMNGYIKL 184

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +D+   L   M+   + PDV TY+ LI G C  +  ++A  LF EM+D+G+ PN VTF
Sbjct: 185 GDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTF 244

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++  CKNG++D A  + + M+   + PD   YNTL+ G C  G + +A++L   M  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIM 304

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G   D  +Y  LI+G CK  ++E A      M+ + IR   V Y 
Sbjct: 305 KGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYT 350



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +   ++ P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 VSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM+ KG+ P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTT 316



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTITD 171
           +Y T+I+ LC       A  L + + +  G+      F  +       + D   +S +  
Sbjct: 15  SYCTMIHFLCTQQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 74

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   K+        T   ++        +      + E ++ G   
Sbjct: 75  AYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPA 134

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+   K G++  A  + + + +  +RP    +NTLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +M+ +G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 195 NAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTT 246


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 175/338 (51%), Gaps = 16/338 (4%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNK-HYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + YM  M      V S N+L   L KN    D    +F+ +   G  PD YTY  LIN  
Sbjct: 143 YKYMREMGVRQS-VVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGL 201

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+G+      +   +     +P  VT++ L+ GLC    + EA  LF K++    +P+V
Sbjct: 202 CKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNV 261

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FTY++L++GLC+ G ++ A+ L E M           KP+ +TYST+ +GLCKEG + +A
Sbjct: 262 FTYSSLMDGLCKNGGSLEAMELLEMMVRKRH------KPNMVTYSTLINGLCKEGKLAEA 315

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF------ 236
            E   +MK + + PD   Y  +I GFC    + EA     EM+   + PN VT+      
Sbjct: 316 VETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKL 375

Query: 237 -NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            N+++  LC NG ++ + +L   M   G+  DA  +++L+  FC  G +++A  +F  M 
Sbjct: 376 NNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMV 435

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGAL-SLYSEMLSK 332
            +GC+ D   +  ++ G+   +++  A  S+  E++++
Sbjct: 436 LDGCVPDHGIWSAVVGGFWDRRKVREAFESIVVELMNE 473



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 163/330 (49%), Gaps = 14/330 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK-MGRVSPGFV 73
           P   S+  +F  L +       +S +K +  +G+   + + N+LI   CK  G +   F 
Sbjct: 118 PTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFE 177

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   + +    PD+ T+ +LI GLC   +  EA  LF ++   GC P V TY+ L++GLC
Sbjct: 178 IFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLC 237

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G+   A+ LF++M           +P+  TYS++ DGLCK G   +A EL   M  + 
Sbjct: 238 QAGNVDEAMGLFDKMKKK------AIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKR 291

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P++VTY++LI G C      EA      M  QG++P+   +  I+N  C   K  EA+
Sbjct: 292 HKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAA 351

Query: 254 RLLELMIQIGVRPDASVY-------NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
             L+ M+   + P+   +       N ++ G C  G +NR+ +L++ M + G   D  ++
Sbjct: 352 TYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTF 411

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRP 336
             L+  +CK  ++  A  ++ EM+  G  P
Sbjct: 412 DSLVKCFCKKGDLHKAARIFDEMVLDGCVP 441



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 142/259 (54%), Gaps = 7/259 (2%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI-VALN 143
           P   ++ S+   L  E+++  A + +  +R  G +  V +   LI  LC+   TI  A  
Sbjct: 118 PTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFE 177

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           +F EM          C PD+ TY T+ +GLCK G   +AKELF +M  +  +P VVTY+ 
Sbjct: 178 IFREMPKRG------CDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSC 231

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L+ G C A + +EA  LF +M  + ++PNV T++ +M+ LCKNG   EA  LLE+M++  
Sbjct: 232 LMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKR 291

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            +P+   Y+TL++G C  G++  A E    M+  G   D   YG +ING+C  ++ + A 
Sbjct: 292 HKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAA 351

Query: 324 SLYSEMLSKGIRPTVVTYN 342
           +   EM+   I P  VT++
Sbjct: 352 TYLDEMVLGQISPNRVTWS 370



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 165/345 (47%), Gaps = 38/345 (11%)

Query: 9   RMHPSPPPVCSFNIL--FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           R+H     +  F+ +  FGC   +K Y +V ++    N + +    Y Y        +MG
Sbjct: 97  RVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKY------MREMG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA-ALFTKLRAFGCKPDVFTY 125
                                V+   LIK LC  S  ++AA  +F ++   GC PD +TY
Sbjct: 151 ----------------VRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTY 194

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            TLINGLC+ G T  A  LF+EM          C P  +TYS +  GLC+ G VD+A  L
Sbjct: 195 GTLINGLCKLGKTFEAKELFKEMDTKG------CSPSVVTYSCLMHGLCQAGNVDEAMGL 248

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F KMK + I P+V TY+SL+ G C      EA  L   M+ +  +PN+VT++ ++N LCK
Sbjct: 249 FDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCK 308

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            GK+ EA   L+ M   G++PDA +Y  +++GFC   +   A      M       +  +
Sbjct: 309 EGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVT 368

Query: 306 YGI-------LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +       ++ G C N  +  +  LY  M ++GI     T+++
Sbjct: 369 WSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDS 413



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 123/262 (46%), Gaps = 7/262 (2%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           F  D  TF  +I  L + +    A  +  +++   C+     + ++  G  R    + A+
Sbjct: 46  FRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAI 105

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            +F +M     +FG  CKP   +Y ++   L +E  +  A   +  M++  +   VV+  
Sbjct: 106 RVFHKM----NDFG--CKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLN 159

Query: 203 SLIRGFCY-ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            LI+  C  +   + A  +F EM  +G  P+  T+  ++N LCK GK  EA  L + M  
Sbjct: 160 VLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDT 219

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G  P    Y+ LM G C  G V+ A  LF  M+      +VF+Y  L++G CKN     
Sbjct: 220 KGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLE 279

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A+ L   M+ K  +P +VTY+T
Sbjct: 280 AMELLEMMVRKRHKPNMVTYST 301



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 36/230 (15%)

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF- 208
           + + E+    + D  T+  +   L        A+E+  +MK+E        + S+ RG+ 
Sbjct: 37  SASAEYSNGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYG 96

Query: 209 ----------------------------------CYANDWNEAKCLFIEMMDQGVQPNVV 234
                                                N    A   +  M + GV+ +VV
Sbjct: 97  RVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVV 156

Query: 235 TFNVIMNELCKN-GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           + NV++  LCKN G +D A  +   M + G  PD+  Y TL++G C  G+   AKELF  
Sbjct: 157 SLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKE 216

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M++ GC   V +Y  L++G C+   ++ A+ L+ +M  K I P V TY++
Sbjct: 217 MDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSS 266


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 164/309 (53%), Gaps = 10/309 (3%)

Query: 7   MLRMHPSP---PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           + R H  P   P V SFNIL   L +    D     F+ + + G FPD+ +YN LIN FC
Sbjct: 201 LFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFC 260

Query: 64  KMGRVSPGFVVLGR-ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           ++  +S G  +L   +L    +PD +T+TS+I G C    +  A+ LF ++ + G KP+ 
Sbjct: 261 RVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPND 320

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FT+  LI+G  + G+   A+ ++E+M        + C PD +T++++ DG C+EG V++ 
Sbjct: 321 FTFNVLIDGFGKVGNMRSAMVMYEKM------LLLGCLPDVVTFTSLIDGYCREGEVNQG 374

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L+ +MK  N++P+V TY  LI   C  N   EA+     +    V P    +N +++ 
Sbjct: 375 LKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDG 434

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK GK+DEA+ ++  M +   RPD   +  L+ G C+ GR+  A   F  M    C+ D
Sbjct: 435 FCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPD 494

Query: 303 VFSYGILIN 311
             +   LI+
Sbjct: 495 EITINSLIS 503



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 165/326 (50%), Gaps = 9/326 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L   L K    D  + LF+        PD+Y++NILI   C++G +   F     + 
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMG 241

Query: 80  R-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTK-LRAFGCKPDVFTYTTLINGLCRTGH 137
              CF PD V++ +LI G C  + I +   L  + +   G  PDV TYT++I+G C+ G 
Sbjct: 242 NFGCF-PDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGD 300

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A  LF+EM +         KP+  T++ + DG  K G +  A  ++ KM      PD
Sbjct: 301 MKAASELFDEMVSSG------IKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPD 354

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           VVT+TSLI G+C   + N+   L+ EM  + + PNV T+ V++N LCK  ++ EA   L 
Sbjct: 355 VVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLR 414

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            +    V P   +YN ++DGFC  G+V+ A  +   M+   C  D  ++ ILI G C   
Sbjct: 415 HLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKG 474

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  A+S + +M+     P  +T N+
Sbjct: 475 RMVEAISTFYKMIEINCVPDEITINS 500



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 164/374 (43%), Gaps = 56/374 (14%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNS--------------IGLFPDLYTYNILINCFCK 64
           S N  FG L++N +      + KR +               + +     TY++L+   CK
Sbjct: 62  SLNACFGYLSRNLNPSIAFEVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCK 121

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK----- 119
           +G      +V   +      PD+     L+       ++  A     ++  +G K     
Sbjct: 122 VGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFV 181

Query: 120 ------------------------------PDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
                                         PDV+++  LI GLCR G    A   F+ M 
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNM- 240

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK-MKDENINPDVVTYTSLIRGF 208
              G FG  C PD ++Y+T+ +G C+   + K  +L  + M  + ++PDV+TYTS+I G+
Sbjct: 241 ---GNFG--CFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGY 295

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C   D   A  LF EM+  G++PN  TFNV+++   K G M  A  + E M+ +G  PD 
Sbjct: 296 CKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDV 355

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             + +L+DG+C  G VN+  +L+  M+      +V++Y +LIN  CK   I  A +    
Sbjct: 356 VTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRH 415

Query: 329 MLSKGIRPTVVTYN 342
           + S  + P    YN
Sbjct: 416 LKSSEVVPKPFIYN 429



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 1/180 (0%)

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY  +   LCK G  D AK +F  M+ + I PD      L+  +      + AK    E+
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
              G++ +   +N ++N L K   +DEA  L    ++    PD   +N L+ G C  G +
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE-MLSKGIRPTVVTYNT 343
           ++A E F +M + GC  D+ SY  LING+C+  EI     L  E ML KG+ P V+TY +
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTS 290


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 175/336 (52%), Gaps = 22/336 (6%)

Query: 24  FGCLAKNKHYDTVLSLF----KRLNSIGLF----------PDLYTYNILINCFCKMGRVS 69
           FGC  +   Y+ ++ LF    +  +++ LF          PD++++N++I   CK+G V 
Sbjct: 192 FGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQ 251

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTL 128
               ++ R+     +PD VT   L+ GLC    + +   +  +L+  G C P+V TYT++
Sbjct: 252 KALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSV 311

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           I+G C+ G    A+ ++ +M        V   P+ +TY+ + +G  K G +  A  ++ +
Sbjct: 312 ISGYCKAGRMEDAMAVYNDMV------AVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQ 365

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M      PDVVT++SLI G+C     ++A  ++ EM    +QPN  TF +I++  CK  +
Sbjct: 366 MILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNR 425

Query: 249 MDEASRLLELM-IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
             EA   L+ M ++  + P A +YN ++D  C  G+V+ A  + + ME  GC  D ++Y 
Sbjct: 426 SGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYT 485

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ILI G+C    I  A++ + +M+  G  P  +  N+
Sbjct: 486 ILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNS 521



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 165/333 (49%), Gaps = 10/333 (3%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           PP   S+  +   + ++  +   L LF ++ +  G FP+    + L       G +    
Sbjct: 124 PPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAA 183

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPDVFTYTTLING 131
            +L +  +   + +A  +  L+       R+ +A ALF      G   PDV+++  +I G
Sbjct: 184 ALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKG 243

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           +C+ G    AL L E M     EFG  C PD +T++ + +GLC+   V K +E+  +++ 
Sbjct: 244 VCKVGDVQKALELVERM----DEFG--CSPDTVTHNILVNGLCRAKEVSKGREVLRRLQR 297

Query: 192 ENI-NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           + +  P+VVTYTS+I G+C A    +A  ++ +M+  G  PNVVT+NV++N   K G M 
Sbjct: 298 DGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMG 357

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
            A  + + MI     PD   +++L+DG+C  G+++ A +++  M       +  ++ I+I
Sbjct: 358 SAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIII 417

Query: 311 NGYCKNKEIEGALSLYSEM-LSKGIRPTVVTYN 342
           + +CK      AL    +M +   I P    YN
Sbjct: 418 HTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYN 450



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 135/310 (43%), Gaps = 66/310 (21%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN++   + K       L L +R++  G  PD  T+NIL+N  C+   VS G  V
Sbjct: 232 PDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREV 291

Query: 75  LGRILRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG---------------- 117
           L R+ R     P+ VT+TS+I G C   R+ +A A++  + A G                
Sbjct: 292 LRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYG 351

Query: 118 -------------------CKPDVFTYTTLINGLCRTGHTIVALNLFEEMA--------- 149
                              C PDV T+++LI+G CR G    A+ ++ EMA         
Sbjct: 352 KAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAH 411

Query: 150 ------------NGNGEFGVVCK---------PDAITYSTITDGLCKEGFVDKAKELFLK 188
                       N +GE     K         P A  Y+ + D LCK G VD+A  + ++
Sbjct: 412 TFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIE 471

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           M+++   PD  TYT LI G C      EA   F +M++ G  P+ +  N  ++ L K+G 
Sbjct: 472 MEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGM 531

Query: 249 MDEASRLLEL 258
             E   ++ +
Sbjct: 532 PGEVDHIMRI 541



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 128/247 (51%), Gaps = 7/247 (2%)

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
           CA S +   +AL +        P   +Y  +I+ +C++G    AL LF++M + +G F  
Sbjct: 103 CASSTLHLFSALHSPHSQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYF-- 160

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              P+A   S ++      G +D A  L  K      + +   Y  L+  F       +A
Sbjct: 161 ---PNARFLSFLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDA 217

Query: 218 KCLFIEMMDQGV-QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
             LF   +  GV  P+V +FNV++  +CK G + +A  L+E M + G  PD   +N L++
Sbjct: 218 VALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVN 277

Query: 277 GFCLTGRVNRAKELFVSMESNG-CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           G C    V++ +E+   ++ +G CM +V +Y  +I+GYCK   +E A+++Y++M++ G  
Sbjct: 278 GLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTS 337

Query: 336 PTVVTYN 342
           P VVTYN
Sbjct: 338 PNVVTYN 344


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 161/323 (49%), Gaps = 6/323 (1%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N L   L K  +    + L K++   G   D  TYN LI+  CK G+V  GF + G +++
Sbjct: 495 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 554

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD  T+  LI G+C   ++ EA  L+ + ++    P+V+TY  +I+G C+      
Sbjct: 555 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 614

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
              LF E+   N E       +++ Y+T+    C+ G   +A +L   M+ + I P   T
Sbjct: 615 GEKLFTELLTQNLEL------NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTAT 668

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y+SLI G C      +AKCL  EM  +G+ PNVV +  ++   CK G+MD+   +L+ M 
Sbjct: 669 YSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMS 728

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
              + P+   Y  ++DG+  +G +  A +L   M   G + D  +Y +L NG+CK  +IE
Sbjct: 729 SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIE 788

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
               +   M  +G+    +TY T
Sbjct: 789 EGFKICDYMSQEGLPLDEITYTT 811



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 174/327 (53%), Gaps = 10/327 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++++L   L K + ++   S+ K     G  P+   YN LI+ +CKMG +     + G +
Sbjct: 318 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 377

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGLCRTG 136
           +     P++VT  S+I+G C   ++ +A  +  ++  R F   P  FT  T+I+ LC   
Sbjct: 378 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFT--TIIHWLCMNS 435

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL    EM   N       +P+    +T+  GLCKEG    A EL+ ++ ++    
Sbjct: 436 RFESALRFLREMLLRN------MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGA 489

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           ++VT  +LI G C   +  EA  L  +M+++G   + +T+N +++  CK GK++E  +L 
Sbjct: 490 NLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLR 549

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M++ G+ PD   YN L+ G C  G+++ A  L+   +S   + +V++YG++I+GYCK 
Sbjct: 550 GEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKA 609

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +IE    L++E+L++ +    V YNT
Sbjct: 610 DKIEEGEKLFTELLTQNLELNSVVYNT 636



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 166/340 (48%), Gaps = 7/340 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           CI + ML    S  P  +F  +   L  N  +++ L   + +    + P+      L+  
Sbjct: 407 CILEEMLSRGFSINP-GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGG 465

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G+ S    +  R+L   F  + VT  +LI GLC    + EA  L  K+   G   D
Sbjct: 466 LCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLD 525

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
             TY TLI+G C+ G       L  EM     E      PD  TY+ +  G+C+ G +D+
Sbjct: 526 KITYNTLISGCCKEGKVEEGFKLRGEMVKQGIE------PDTFTYNLLIHGMCRIGKLDE 579

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  L+ + K  ++ P+V TY  +I G+C A+   E + LF E++ Q ++ N V +N ++ 
Sbjct: 580 AVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIR 639

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             C+NG   EA +L + M   G+ P  + Y++L+ G C  GR+  AK L   M   G + 
Sbjct: 640 AYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLP 699

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +V  Y  LI GYCK  +++  +++  EM S  I P  +TY
Sbjct: 700 NVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITY 739



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 172/362 (47%), Gaps = 41/362 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  F+       K    +  + LF  +  +G+ P++ TYN LI+  CK G +   F  
Sbjct: 244 PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRF 303

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++++       +T++ LI GL    +  EA ++  +    G  P+   Y TLI+G C+
Sbjct: 304 KEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCK 363

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM--KDE 192
            G+   AL +  +M +          P+++T ++I  G CK G +++A+ +  +M  +  
Sbjct: 364 MGNLGDALRIRGDMVSKG------INPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGF 417

Query: 193 NINPDVVT---------------------------------YTSLIRGFCYANDWNEAKC 219
           +INP   T                                  T+L+ G C     ++A  
Sbjct: 418 SINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVE 477

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L+  ++++G   N+VT N +++ LCK G M EA RLL+ M++ G   D   YNTL+ G C
Sbjct: 478 LWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCC 537

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G+V    +L   M   G   D F+Y +LI+G C+  +++ A++L++E  S+ + P V 
Sbjct: 538 KEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVY 597

Query: 340 TY 341
           TY
Sbjct: 598 TY 599



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 162/320 (50%), Gaps = 15/320 (4%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFP-DLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           +LFG   KN+H + + S    LN +G     +   ++LI+ +C   R + GF     + R
Sbjct: 145 VLFGD-PKNRHIE-IASAMADLNEVGESGVAVAAVDLLIHVYCTQFR-NVGFRNAIGVFR 201

Query: 81  ----SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
                   P   T T L+  L   + + ++  +F  +R  G  PDV+ ++T IN  C+ G
Sbjct: 202 FLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGG 260

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+ LF +M     + GV   P+ +TY+ +  GLCK G +D+A     KM  + +N 
Sbjct: 261 KVEDAIQLFFDME----KLGV--SPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNA 314

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
            ++TY+ LI G      +NEA  +  E +++G  PN V +N +++  CK G + +A R+ 
Sbjct: 315 TLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIR 374

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M+  G+ P++   N+++ GFC  G++ +A+ +   M S G   +  ++  +I+  C N
Sbjct: 375 GDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMN 434

Query: 317 KEIEGALSLYSEMLSKGIRP 336
              E AL    EML + +RP
Sbjct: 435 SRFESALRFLREMLLRNMRP 454



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 156/338 (46%), Gaps = 24/338 (7%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFK-RLNSIGLFPDLYTYNILINCFCKMGRVS 69
           H SP     F+ +F  + +N +  T L+ F    +S G    L +Y +L+      G VS
Sbjct: 73  HLSPH---QFDSVFFSVRRNVNPKTALNFFYFASDSCGFRFTLRSYCVLMRSLIVSGFVS 129

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTL 128
           P  ++L R++        V F         ++R +E A+    L   G     V     L
Sbjct: 130 PARLLLIRLIDRKL---PVLFGD------PKNRHIEIASAMADLNEVGESGVAVAAVDLL 180

Query: 129 INGLCRTGHTIV---ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
           I+  C     +    A+ +F  +AN  G F     P   T + +   L K   ++K+  +
Sbjct: 181 IHVYCTQFRNVGFRNAIGVFRFLAN-KGVF-----PTVKTCTFLLSSLVKANELEKSYWV 234

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F  M+ + ++PDV  +++ I  FC      +A  LF +M   GV PNVVT+N +++ LCK
Sbjct: 235 FETMR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCK 293

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           +G +DEA R  E M++ GV      Y+ L++G     + N A  +       G   +   
Sbjct: 294 HGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVV 353

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           Y  LI+GYCK   +  AL +  +M+SKGI P  VT N+
Sbjct: 354 YNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 391



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 6/165 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    PP   +++ L   +      +    L   +   GL P++  Y  LI  +CK+G+
Sbjct: 657 MRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQ 716

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     VL  +      P+ +T+T +I G      +  AA L  ++   G  PD  TY  
Sbjct: 717 MDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNV 776

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           L NG C+ G       + + M+            D ITY+T+  G
Sbjct: 777 LTNGFCKEGKIEEGFKICDYMSQEGLPL------DEITYTTLVHG 815



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C+ D M +    P  VC +  L G   K    D V+++ + ++S  + P+  TY ++I+ 
Sbjct: 687 CLIDEMRKEGLLPNVVC-YTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDG 745

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           + K G +     +L  ++     PD VT+  L  G C E +I E   +   +   G   D
Sbjct: 746 YSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLD 805

Query: 122 VFTYTTLING 131
             TYTTL++G
Sbjct: 806 EITYTTLVHG 815


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 168/332 (50%), Gaps = 7/332 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R +   P V  +  L     +   Y+  + L K + + G+ PDL+ YN LI   
Sbjct: 473 VLDQMIR-NGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+  +V    ++L  +      P+A T+ + I        I  A   F  + + G  P+ 
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNN 591

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             YT LI G C  G+T+ AL+ F+ M     E G++  PD   YS I   L K G   +A
Sbjct: 592 VIYTILIKGHCDVGNTVEALSTFKCML----EKGLI--PDIRAYSAIIHSLSKNGKTKEA 645

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             +FLK     + PDV  Y SLI GFC   D  +A  L+ EM+  G+ PN+V +N ++N 
Sbjct: 646 MGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLING 705

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCK G++ +A  L + + +  + PD   Y+T++DG+C +G +  A +LF  M S G   D
Sbjct: 706 LCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPD 765

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            + Y ILI+G  K   +E ALSL+ E   K +
Sbjct: 766 GYIYCILIDGCGKEGNLEKALSLFHEAQQKSV 797



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 175/358 (48%), Gaps = 33/358 (9%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N + G +AK       +SLF  +   GL PD +TYN+LI+ + K   ++    +L 
Sbjct: 381 VVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLA 440

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +     TP   T++ LI GLC  S + +A  +  ++   G KP+VF Y TLI    +  
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQES 500

Query: 137 HTIVALNLFEEM-ANG------------------------------NGEFGVVCKPDAIT 165
              +A+ L + M ANG                               GE G+  KP+A T
Sbjct: 501 RYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGI--KPNAHT 558

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y    +   K G +  A+  F  M    I P+ V YT LI+G C   +  EA   F  M+
Sbjct: 559 YGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCML 618

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++G+ P++  ++ I++ L KNGK  EA  +    ++ GV PD  +YN+L+ GFC  G + 
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIE 678

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +A +L+  M  NG   ++  Y  LING CK  E+  A  L+ E+  K + P VVTY+T
Sbjct: 679 KASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYST 736



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P+L+TYN  I   C+ G V     V   ++     PD  T+T L+ G C + R  EA  +
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           F  + + G  P+ FTYT LI+G  + G+   AL + +EM     +  VV      TY+ +
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVV------TYNAM 387

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             G+ K G + KA  LF +M    + PD  TY  LI G+  ++D  +A  L  EM  + +
Sbjct: 388 IGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            P+  T++V+++ LC +  + +A+ +L+ MI+ GV+P+  +Y TL+  +    R   A E
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           L   M +NG + D+F Y  LI G C+ K++E A  L  +M  KGI+P   TY
Sbjct: 508 LLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTY 559



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 161/307 (52%), Gaps = 9/307 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           S+F    S G FP L   N L+    K   +   + V G ++ +   PD  T+T++IK  
Sbjct: 193 SVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAH 252

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE-EMANGNGEFG 156
           C    +++   + +++    CKP++FTY   I GLC+TG    AL + +  M  G G   
Sbjct: 253 CKVGDVIKGKMVLSEMEK-ECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLG--- 308

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
               PD  TY+ + DG CK+    +AK +F  M    +NP+  TYT+LI GF    +  E
Sbjct: 309 ----PDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEE 364

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A  +  EM+ +G++ NVVT+N ++  + K G+M +A  L   M+  G+ PD   YN L+D
Sbjct: 365 ALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLID 424

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           G+  +  + +A EL   M++       F+Y +LI+G C + +++ A  +  +M+  G++P
Sbjct: 425 GYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKP 484

Query: 337 TVVTYNT 343
            V  Y T
Sbjct: 485 NVFMYGT 491



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 164/333 (49%), Gaps = 16/333 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +C  N++   L  N        ++  +    + PD+YTY  +I   CK+G V  G +
Sbjct: 205 PTLICCNNLMRDLLKAN-MMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKM 263

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL  + + C  P+  T+ + I GLC    + EA  +   +   G  PD  TYT L++G C
Sbjct: 264 VLSEMEKEC-KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFC 322

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +   +  A  +FE M +          P+  TY+ + DG  KEG +++A    L++KDE 
Sbjct: 323 KQKRSKEAKLIFESMPSSG------LNPNRFTYTALIDGFIKEGNIEEA----LRIKDEM 372

Query: 194 INP----DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           I      +VVTY ++I G   A +  +A  LF EM+  G++P+  T+N++++   K+  M
Sbjct: 373 ITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDM 432

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
            +A  LL  M    + P    Y+ L+ G C +  + +A E+   M  NG   +VF YG L
Sbjct: 433 AKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTL 492

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I  Y +    E A+ L   M++ G+ P +  YN
Sbjct: 493 IKAYVQESRYEMAIELLKIMIANGVLPDLFCYN 525



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 169/357 (47%), Gaps = 28/357 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ +   L+KN      + +F +    G+ PD++ YN LI+ FCK G +     +
Sbjct: 624 PDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQL 683

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L +   P+ V + +LI GLC    + +A  LF ++      PDV TY+T+I+G C+
Sbjct: 684 YDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCK 743

Query: 135 TGHTIVALNLFEEMA---------------NGNGEFGVVCKPDAI-------------TY 166
           +G+   A  LF+EM                +G G+ G + K  ++              +
Sbjct: 744 SGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAF 803

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +++ D  CK G V +A+ELF  M D+ + P++VTYT LI  +  A    EA+ LF++M  
Sbjct: 804 NSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMET 863

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           + + PN +T+  ++    + G   +   L + M   G+  DA  Y  +   +C  G+   
Sbjct: 864 RNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLE 923

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A +L       G   +   +  LI   CK K+I   L L SEM  + +  +  T NT
Sbjct: 924 ALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNT 980



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 145/292 (49%), Gaps = 7/292 (2%)

Query: 51  DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110
           +L  ++I I+ F  +G ++    V    +   F P  +   +L++ L   + +     ++
Sbjct: 171 NLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVY 230

Query: 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170
             +      PDV+TYT +I   C+ G  I    +  EM          CKP+  TY+   
Sbjct: 231 GSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-------CKPNLFTYNAFI 283

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
            GLC+ G VD+A E+   M ++ + PD  TYT L+ GFC      EAK +F  M   G+ 
Sbjct: 284 GGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLN 343

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           PN  T+  +++   K G ++EA R+ + MI  G++ +   YN ++ G    G + +A  L
Sbjct: 344 PNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           F  M   G   D ++Y +LI+GY K+ ++  A  L +EM ++ + P+  TY+
Sbjct: 404 FNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYS 455



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 123/268 (45%), Gaps = 12/268 (4%)

Query: 1    FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFK--RLNSIGLFPDLYTYNIL 58
            F +FD M+    SP       ++ GC  K  + +  LSLF   +  S+G    L  +N L
Sbjct: 751  FKLFDEMISKGISPDGYIYCILIDGC-GKEGNLEKALSLFHEAQQKSVG---SLSAFNSL 806

Query: 59   INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
            I+ FCK G+V     +   ++    TP+ VT+T LI        + EA  LF  +     
Sbjct: 807  IDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNI 866

Query: 119  KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
             P+  TYT+L+    + G+    ++LF++M       G+ C  DAI Y  +    CKEG 
Sbjct: 867  IPNTLTYTSLLLSYNQIGNRFKMISLFKDMEAR----GIAC--DAIAYGVMASAYCKEGK 920

Query: 179  VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
              +A +L  K   E I  +   + +LI   C     +    L  EM  + +  +  T N 
Sbjct: 921  SLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNT 980

Query: 239  IMNELCKNGKMDEASRLLELMIQIGVRP 266
            ++    K+G  DEAS++L +M ++G  P
Sbjct: 981  LLLGFYKSGNEDEASKVLGVMQRLGWVP 1008


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 173/370 (46%), Gaps = 46/370 (12%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYD------------------------TVL---------- 37
           PS     S+N +   L +  H+D                        TVL          
Sbjct: 72  PSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLA 131

Query: 38  ----SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
                L + + S G+  D+ TY  LI   C    V     ++G +  S   P+ V ++SL
Sbjct: 132 DQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSL 191

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++G C   R  +   +F ++   G +PDV  YT LI+ LC+ G    A  + + M     
Sbjct: 192 LQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGL 251

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           E      P+ +TY+ + + +CKEG V +A  +  KM ++ + PDVVTY +LI+G     +
Sbjct: 252 E------PNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLE 305

Query: 214 WNEAKCLFIEMMDQG--VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            +EA  L  EM+     V+PNVVTFN ++  LC  G+M +A ++  +M + G   +   Y
Sbjct: 306 MDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTY 365

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N L+ G     +V +A EL   M S G   D F+Y ILI G+CK  +++ A  L S M  
Sbjct: 366 NLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRD 425

Query: 332 KGIRPTVVTY 341
           +GI P +  Y
Sbjct: 426 RGIEPELFHY 435



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 169/334 (50%), Gaps = 10/334 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R     P V ++N+L  C+ K       + + K+++  G+ PD+ TYN LI   
Sbjct: 242 VMDMMVR-RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 63  CKMGRVSPGFVVLGRILR--SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             +  +     +L  ++R  +   P+ VTF S+I+GLC   R+ +A  +   +   GC  
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMV 360

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY  LI GL R      A+ L +EM +     G+  +PD+ TYS +  G CK   VD
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMTS----LGL--EPDSFTYSILIKGFCKMWQVD 414

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A++L   M+D  I P++  Y  L+   C       A+ LF EM D     +VV ++ ++
Sbjct: 415 RAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMI 473

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G +  A  LL+ ++  G+ PDA  Y+ +++ F  +G +  A  +   M ++G +
Sbjct: 474 HGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFL 533

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            DV  +  LI GY    EI   L L  EM++K I
Sbjct: 534 PDVAVFDSLIQGYSTKGEINKVLELIREMITKNI 567



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 167/364 (45%), Gaps = 40/364 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ L     K+  ++ V  +F  ++  G+ PD+  Y  LI+  CK+G+      V
Sbjct: 183 PNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGV 242

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++R    P+ VT+  LI  +C E  + EA  +  K+   G  PDV TY TLI GL  
Sbjct: 243 MDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC-----KEGF----------- 178
                 A+ L EEM  G      + KP+ +T++++  GLC     ++ F           
Sbjct: 303 VLEMDEAMWLLEEMVRGKN----IVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGC 358

Query: 179 -------------------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                              V KA EL  +M    + PD  TY+ LI+GFC     + A+ 
Sbjct: 359 MVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAED 418

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L   M D+G++P +  +  ++  +C+ G M+ A  L   M       D   Y+T++ G C
Sbjct: 419 LLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVVAYSTMIHGAC 477

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +  AKEL  S+   G   D  +Y I+IN + K+ ++E A  +  +M + G  P V 
Sbjct: 478 KAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVA 537

Query: 340 TYNT 343
            +++
Sbjct: 538 VFDS 541



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 169/360 (46%), Gaps = 44/360 (12%)

Query: 8   LRMHPS-PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           L  HP+  P   S+ +L   L  ++  D  + L + + S G+  D+ TY  LI   C   
Sbjct: 105 LEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAA 164

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V     ++G +  S   P+ V ++SL++G C   R  +   +F ++   G +PDV  YT
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI+ LC+ G    A  + + M     E      P+ +TY+ + + +CKEG V +A  + 
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLE------PNVVTYNVLINCMCKEGSVKEAIGVL 278

Query: 187 LKMKDENINPDVVTYTSL-------------------------------------IRGFC 209
            KM ++ + PDVVTY +L                                     I+G C
Sbjct: 279 KKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLC 338

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                 +A  +   M + G   N+VT+N+++  L +  K+ +A  L++ M  +G+ PD+ 
Sbjct: 339 DIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSF 398

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y+ L+ GFC   +V+RA++L  +M   G   ++F Y  L+   C+   +E A +L++EM
Sbjct: 399 TYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM 458



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 141/266 (53%), Gaps = 17/266 (6%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAF------GCKPDVFTYTTLINGLCRTGHTI 139
           DAV++ +++  LC       A AL   LRA        C+P+  +YT L+  LC      
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGAL---LRAMSLEPHPACRPNAVSYTVLMRALCADRLAD 132

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A+ L   M +         + D +TY T+  GLC    VDKA EL  +M +  I P+VV
Sbjct: 133 QAVGLLRSMRSAG------VRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVV 186

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            Y+SL++G+C +  W +   +F+EM ++G++P+VV +  +++ LCK GK  +A  ++++M
Sbjct: 187 VYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMM 246

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           ++ G+ P+   YN L++  C  G V  A  +   M   G   DV +Y  LI G     E+
Sbjct: 247 VRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEM 306

Query: 320 EGALSLYSEMLSKG--IRPTVVTYNT 343
           + A+ L  EM+     ++P VVT+N+
Sbjct: 307 DEAMWLLEEMVRGKNIVKPNVVTFNS 332



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 128/242 (52%), Gaps = 3/242 (1%)

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
           R++      + L A     D  +Y T++  LCR GH   A  L   M+    E    C+P
Sbjct: 57  RLLPLGEATSLLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSL---EPHPACRP 113

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           +A++Y+ +   LC +   D+A  L   M+   +  DVVTY +LIRG C A + ++A  L 
Sbjct: 114 NAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELM 173

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            EM + G++PNVV ++ ++   CK+G+ ++  ++   M + G+ PD  +Y  L+D  C  
Sbjct: 174 GEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKV 233

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G+  +A  +   M   G   +V +Y +LIN  CK   ++ A+ +  +M  KG+ P VVTY
Sbjct: 234 GKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTY 293

Query: 342 NT 343
           NT
Sbjct: 294 NT 295


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 164/309 (53%), Gaps = 10/309 (3%)

Query: 7   MLRMHPSP---PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           + R H  P   P V SFNIL   L +    D     F+ + + G FPD+ +YN LIN FC
Sbjct: 201 LFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFC 260

Query: 64  KMGRVSPGFVVLGR-ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           ++  +S G  +L   +L    +PD +T+TS+I G C    +  A+ LF ++ + G KP+ 
Sbjct: 261 RVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPND 320

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FT+  LI+G  + G+   A+ ++E+M        + C PD +T++++ DG C+EG V++ 
Sbjct: 321 FTFNVLIDGFGKVGNMRSAMVMYEKM------LLLGCLPDVVTFTSLIDGYCREGEVNQG 374

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L+ +MK  N++P+V TY  LI   C  N   EA+     +    V P    +N +++ 
Sbjct: 375 LKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDG 434

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK GK+DEA+ ++  M +   RPD   +  L+ G C+ GR+  A   F  M    C+ D
Sbjct: 435 FCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPD 494

Query: 303 VFSYGILIN 311
             +   LI+
Sbjct: 495 EITINSLIS 503



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 165/326 (50%), Gaps = 9/326 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L   L K    D  + LF+        PD+Y++NILI   C++G +   F     + 
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMG 241

Query: 80  R-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTK-LRAFGCKPDVFTYTTLINGLCRTGH 137
              CF PD V++ +LI G C  + I +   L  + +   G  PDV TYT++I+G C+ G 
Sbjct: 242 NFGCF-PDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGD 300

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A  LF+EM +         KP+  T++ + DG  K G +  A  ++ KM      PD
Sbjct: 301 MKAASELFDEMVSSG------IKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPD 354

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           VVT+TSLI G+C   + N+   L+ EM  + + PNV T+ V++N LCK  ++ EA   L 
Sbjct: 355 VVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLR 414

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            +    V P   +YN ++DGFC  G+V+ A  +   M+   C  D  ++ ILI G C   
Sbjct: 415 HLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKG 474

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  A+S + +M+     P  +T N+
Sbjct: 475 RMVEAISTFYKMIEINCVPDEITINS 500



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 164/374 (43%), Gaps = 56/374 (14%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNS--------------IGLFPDLYTYNILINCFCK 64
           S N  FG L++N +      + KR +               + +     TY++L+   CK
Sbjct: 62  SLNACFGYLSRNLNPSIAFEVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCK 121

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK----- 119
           +G      +V   +      PD+     L+       ++  A     ++  +G K     
Sbjct: 122 VGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFV 181

Query: 120 ------------------------------PDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
                                         PDV+++  LI GLCR G    A   F+ M 
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNM- 240

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK-MKDENINPDVVTYTSLIRGF 208
              G FG  C PD ++Y+T+ +G C+   + K  +L  + M  + ++PDV+TYTS+I G+
Sbjct: 241 ---GNFG--CFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGY 295

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C   D   A  LF EM+  G++PN  TFNV+++   K G M  A  + E M+ +G  PD 
Sbjct: 296 CKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDV 355

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             + +L+DG+C  G VN+  +L+  M+      +V++Y +LIN  CK   I  A +    
Sbjct: 356 VTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRH 415

Query: 329 MLSKGIRPTVVTYN 342
           + S  + P    YN
Sbjct: 416 LKSSEVVPKPFIYN 429



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 1/180 (0%)

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY  +   LCK G  D AK +F  M+ + I PD      L+  +      + AK    E+
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
              G++ +   +N ++N L K   +DEA  L    ++    PD   +N L+ G C  G +
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE-MLSKGIRPTVVTYNT 343
           ++A E F +M + GC  D+ SY  LING+C+  EI     L  E ML KG+ P V+TY +
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTS 290


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 188/402 (46%), Gaps = 80/402 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +   N +   L K K  D   S+ +++   G+ PDL+TY+++I+  CK   +     V
Sbjct: 243 PKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERV 302

Query: 75  LGRILRSCFTPDAVTFTSLIKG-----------------------------------LCA 99
           L +++ +   P+++T+ SLI G                                   L  
Sbjct: 303 LEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFK 362

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTT-------------------------------- 127
             R  EA  +F  +   G KPD+ +Y+T                                
Sbjct: 363 HGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPN 422

Query: 128 ------LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
                 LIN   R G    A+ +FE+M N     G++  PD +T++T+   LC+ G +D 
Sbjct: 423 KHVFNILINAYARCGMMDKAMLIFEDMQNK----GMI--PDTVTFATVISSLCRIGRLDD 476

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-QPNVVTFNVIM 240
           A   F  M D  + P    Y  LI+G C   +  +AK L  EMM++ +  P V  F+ I+
Sbjct: 477 ALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSII 536

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           N LCK G++ E   ++++M+Q G RP+   +N+LM+G+CL G +  A  L  +M S G  
Sbjct: 537 NNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIE 596

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            + + YG L++GYCKN  I+ AL+++ +ML KG++PT V Y+
Sbjct: 597 PNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYS 638



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 171/347 (49%), Gaps = 15/347 (4%)

Query: 2   CIFDYMLRMHPSPPPVC-SFNILFGCLAKNKHYDTVL-----SLFKRLNSIGLFPDLYTY 55
           CIFD M+   P P  +  S N  + C      Y TV+     ++F  + + G+ P+ + +
Sbjct: 371 CIFDSMVLKGPKPDIISYSTNASWVCYW----YVTVVWVMWHNIFNLMLTKGIAPNKHVF 426

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
           NILIN + + G +    ++   +      PD VTF ++I  LC   R+ +A   F  +  
Sbjct: 427 NILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVD 486

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
            G  P    Y  LI G C  G  + A  L  EM N +     +  P    +S+I + LCK
Sbjct: 487 IGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD-----IPPPGVKYFSSIINNLCK 541

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           EG V + K++   M      P+VVT+ SL+ G+C   +  EA  L   M   G++PN   
Sbjct: 542 EGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYI 601

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +  +++  CKNG++D+A  +   M+  GV+P + +Y+ ++ G     R   AK++F  M 
Sbjct: 602 YGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMI 661

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +G    + +YG+++ G C+N   + A  L  ++ +  ++  ++T+N
Sbjct: 662 ESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 708



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 170/345 (49%), Gaps = 21/345 (6%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDT-------VLSLFKRLNSIG----LFPDLYTYNILINC 61
           +P P  + N +   LA+              + LFKR++         P ++TYNILI+C
Sbjct: 126 APVPARALNGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDC 185

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           + ++ R   G  ++GR+L++   PD  ++ SLI G   +  + +A  LF ++   G  P 
Sbjct: 186 YRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPK 244

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           +    ++I  LC+      A ++ ++M +          PD  TYS I DGLCK   +DK
Sbjct: 245 ILICNSIIKELCKMKEMDKAESIVQKMVDSG------IAPDLFTYSLIIDGLCKSKAMDK 298

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+ +  +M +    P+ +TY SLI G+  +  WNE+  +F +M   GV P V   N  ++
Sbjct: 299 AERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIH 358

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC---LTGRVNRAKELFVSMESNG 298
            L K+G+ +EA  + + M+  G +PD   Y+T     C   +T        +F  M + G
Sbjct: 359 ALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKG 418

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              +   + ILIN Y +   ++ A+ ++ +M +KG+ P  VT+ T
Sbjct: 419 IAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 463



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 168/367 (45%), Gaps = 43/367 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IF+ ML    +P     FNIL    A+    D  + +F+ + + G+ PD  T+  +I+  
Sbjct: 410 IFNLMLTKGIAPNKHV-FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 468

Query: 63  CKMGR---------------VSPGFVVLGRILRSCFT---------------------PD 86
           C++GR               V P   V G +++ C                       P 
Sbjct: 469 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 528

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
              F+S+I  LC E R+ E   +   +   G +P+V T+ +L+ G C  G+   A  L +
Sbjct: 529 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 588

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
            MA+      +  +P+   Y T+ DG CK G +D A  +F  M  + + P  V Y+ ++ 
Sbjct: 589 AMAS------IGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH 642

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G   A     AK +F EM++ G   ++ T+ V++  LC+N   DEA+ LLE +  + V+ 
Sbjct: 643 GLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 702

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   +N ++      GR   AKELF ++ + G + ++ +Y ++I    K +  E A +L+
Sbjct: 703 DIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLF 762

Query: 327 SEMLSKG 333
             +   G
Sbjct: 763 ISVEKSG 769



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 164/367 (44%), Gaps = 45/367 (12%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           SPP + ++NIL  C  +    D  L++  RL   GL PD ++Y+ LI  F K G V    
Sbjct: 172 SPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAH 230

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   ++     P  +   S+IK LC    + +A ++  K+   G  PD+FTY+ +I+GL
Sbjct: 231 CLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 290

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C++     A  + E+M           +P++ITY+++  G    G  +++  +F +M   
Sbjct: 291 CKSKAMDKAERVLEQMVEAG------TRPNSITYNSLIHGYSISGMWNESVRVFKQMSSC 344

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT----------------- 235
            + P V    S I         NEAKC+F  M+ +G +P++++                 
Sbjct: 345 GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVW 404

Query: 236 ---------------------FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
                                FN+++N   + G MD+A  + E M   G+ PD   + T+
Sbjct: 405 VMWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 464

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +   C  GR++ A   F  M   G       YG LI G C + E+  A  L SEM++K I
Sbjct: 465 ISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDI 524

Query: 335 RPTVVTY 341
            P  V Y
Sbjct: 525 PPPGVKY 531



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 6/253 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P +  ++ +IN  CK GRV+ G  ++  ++++   P+ VTF SL++G C    + EA AL
Sbjct: 527 PGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFAL 586

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
              + + G +P+ + Y TL++G C+ G    AL +F +M +     GV  KP ++ YS I
Sbjct: 587 LDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHK----GV--KPTSVLYSII 640

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GL +      AK++F +M +      + TY  ++ G C  N  +EA  L  ++    V
Sbjct: 641 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNV 700

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           + +++TFN++++ + K G+  EA  L + +   G+ P+   Y+ ++           A  
Sbjct: 701 KFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADN 760

Query: 290 LFVSMESNGCMRD 302
           LF+S+E +G   D
Sbjct: 761 LFISVEKSGHASD 773



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 130/291 (44%), Gaps = 11/291 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG--CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           I D M++     P V +FN L    CL  N   +   +L   + SIG+ P+ Y Y  L++
Sbjct: 551 IMDMMVQT-GQRPNVVTFNSLMEGYCLVGN--MEEAFALLDAMASIGIEPNCYIYGTLVD 607

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK GR+     V   +L     P +V ++ ++ GL    R   A  +F ++   G   
Sbjct: 608 GYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTV 667

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
            + TY  ++ GLCR   T  A  L E++      F +  K D IT++ +   + K G   
Sbjct: 668 SIHTYGVVLGGLCRNNCTDEANMLLEKL------FAMNVKFDIITFNIVISAMFKVGRRQ 721

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AKELF  +    + P++ TY+ +I        + EA  LFI +   G   +    N I+
Sbjct: 722 EAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIV 781

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
             L    ++ +AS  L ++ +  +  +AS  + L   F   G+     +L 
Sbjct: 782 RMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGKYREHIKLL 832



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 6/274 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V  F+ +   L K         +   +   G  P++ T+N L+  +C +G +   F 
Sbjct: 526 PPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 585

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +      P+   + +L+ G C   RI +A  +F  +   G KP    Y+ +++GL 
Sbjct: 586 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLF 645

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +   T  A  +F EM        +       TY  +  GLC+    D+A  L  K+   N
Sbjct: 646 QARRTTAAKKMFHEMIESGTTVSIH------TYGVVLGGLCRNNCTDEANMLLEKLFAMN 699

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           +  D++T+  +I          EAK LF  +   G+ PN+ T+++++  L K    +EA 
Sbjct: 700 VKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEAD 759

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
            L   + + G   D+ + N ++        V +A
Sbjct: 760 NLFISVEKSGHASDSRLLNHIVRMLLNKAEVAKA 793


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 168/321 (52%), Gaps = 7/321 (2%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           ++ GCLA+ K       L++ + S G  PD++TYNIL++  CK+GR      +L  +   
Sbjct: 322 VIRGCLAEGK-LARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEK 380

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
              P+ VT+++L+   C      +A A+  ++ A G   +   Y  +I  L + G    A
Sbjct: 381 GCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEA 440

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
           + L +EM +        CKPD  TY+TI   LC    +D+A+ +F  + +E +  + +TY
Sbjct: 441 MRLVQEMKSQG------CKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITY 494

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            +LI    ++  W E   L  EM+  G   +VV++N ++  LCK G +D +  LLE M+ 
Sbjct: 495 NTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMT 554

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G++P+   YN L++  C  G+V  A EL   M + G   D+ +Y  LING CK      
Sbjct: 555 KGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHA 614

Query: 322 ALSLYSEMLSKGIRPTVVTYN 342
           AL+L  ++ ++ + P +VTYN
Sbjct: 615 ALNLLEKLPNENVHPDIVTYN 635



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 168/372 (45%), Gaps = 37/372 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R     P   S+N +   LA+   +   L L++R+    + P  +T+ +     
Sbjct: 131 LLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARAL 190

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++GR      +L  + R    PDAV + ++I  L A+  + EAA L  ++   GC  DV
Sbjct: 191 CRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADV 250

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK------- 175
            T+  ++ GLC  GH   A  L + M          C P  +TY  +  GLC+       
Sbjct: 251 NTFNDVVLGLCGLGHVREAARLVDRMMMHG------CTPSVVTYGFLLRGLCRTRQADEA 304

Query: 176 ------------------------EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                                   EG + +A EL+  M  +   PDV TY  L+ G C  
Sbjct: 305 YAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKL 364

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
                A  +  EM ++G  PN+VT++ +++  C+NG  D+A  +L+ M   G   ++  Y
Sbjct: 365 GRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGY 424

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N ++      G+++ A  L   M+S GC  D+ +Y  +I   C N +++ A  ++  +L 
Sbjct: 425 NGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLE 484

Query: 332 KGIRPTVVTYNT 343
           +G+    +TYNT
Sbjct: 485 EGVVANGITYNT 496



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 169/328 (51%), Gaps = 6/328 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++NIL   L K     + + +   +   G  P++ TY+ L++ FC+ G       
Sbjct: 348 PPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARA 407

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L ++    F+ ++  +  +I  L  + ++ EA  L  ++++ GCKPD+ TY T+I  LC
Sbjct: 408 MLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLC 467

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                  A ++F  +     E GVV   + ITY+T+   L   G   +   L  +M    
Sbjct: 468 NNDQMDEAEHIFGNLL----EEGVVA--NGITYNTLIHALLHSGRWQEGLRLANEMVLHG 521

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              DVV+Y  LI+  C   + + +  L  EMM +G++PN  ++N+++NELCK GK+ +A 
Sbjct: 522 CPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDAL 581

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + M+  G+ PD   YNTL++G C  G  + A  L   + +     D+ +Y ILI+ +
Sbjct: 582 ELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWH 641

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           CK + ++ A  L  + +S GI P   T+
Sbjct: 642 CKVRLLDDASMLLDKAVSGGIVPNERTW 669



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           +H  P  V S+N L   L K  + D  + L + + + G+ P+ ++YN+LIN  CK G+V 
Sbjct: 519 LHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVR 578

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +   +L    TPD VT+ +LI GLC       A  L  KL      PD+ TY  LI
Sbjct: 579 DALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILI 638

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           +  C+      A  L ++  +G    G+V  P+  T+  +     ++
Sbjct: 639 SWHCKVRLLDDASMLLDKAVSG----GIV--PNERTWGMMVQNFVRQ 679


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 167/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G V  A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYVPSVVT 418



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 159/292 (54%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G  ++A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVVLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G +  V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G    ++ +  L++   + G   +A ++F+ +     ++G+  +P  ++++T+ +G  K 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAIT----KWGL--RPSVVSFNTLMNGYIKL 184

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +D+   L   M+   + PDV TY+ LI G C  +  ++A  LF EM+D G+ PN VTF
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++  CKNG++  A  + + M+   + PD   YNTL+ G C  G + +A++L   M  
Sbjct: 245 TTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G   D  +Y  LI+G CK  ++E AL     M+ + IR   V Y 
Sbjct: 305 KGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYT 350



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 99/178 (55%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVV 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 23/263 (8%)

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
           S F     ++ S+I  LC    I EA                    TLI  +        
Sbjct: 7   STFRHTLQSYCSMIHFLCTHQMIPEAK-------------------TLIQIVVSRKGKGS 47

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A  +F E+    G        D   +S +     + GF+  A E +   K+        T
Sbjct: 48  ASAVFAEILETKG----TQTSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDT 103

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
              ++        +      + E ++ G   ++  FN++M+   K G++  A  + + + 
Sbjct: 104 CRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAIT 163

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + G+RP    +NTLM+G+   G ++    L  +M+++G   DV++Y +LING CK  +++
Sbjct: 164 KWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMD 223

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A  L+ EML  G+ P  VT+ T
Sbjct: 224 DANELFDEMLDNGLVPNGVTFTT 246


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 170/337 (50%), Gaps = 10/337 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +++ +   L +    +    LF+ + S+G+ PD+YTY ILI+ FCK G +      
Sbjct: 286 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSW 345

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     + + VT+T+L+       ++ +A+ +F ++   GC P+  TY+ L++GLC+
Sbjct: 346 FDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCK 405

Query: 135 TGHTIVALNLFEEMANGNGEFGV----------VCKPDAITYSTITDGLCKEGFVDKAKE 184
            G    A  ++ ++   +   G              P+ +TY  + DGLCK   V  A+E
Sbjct: 406 AGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQE 465

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L   M      P+ + Y +LI GFC     + A+ +F+ M   G  P V T+  +++ + 
Sbjct: 466 LLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMF 525

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K+ ++D A ++L  M++    P+   Y  ++DG C  G   +A +L   ME  GC  +V 
Sbjct: 526 KDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVV 585

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +Y  LI+G  K+ +++ +L L+ +M +KG  P  VTY
Sbjct: 586 TYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTY 622



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 161/334 (48%), Gaps = 22/334 (6%)

Query: 26  CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP 85
           CL     +D    + K +   G  PD  TY+ +I   C+  +V   F++   +      P
Sbjct: 262 CLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNP 321

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
           D  T+T LI   C    I +A + F ++R+ GC  +V TYT L++   +      A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIF 381

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM---------------- 189
             M +        C P+ ITYS + DGLCK G + KA E++ K+                
Sbjct: 382 NRMIDAG------CPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGK 435

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
             ++I P+VVTY +LI G C A+   +A+ L   M+  G +PN + ++ +++  CK GK+
Sbjct: 436 HTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKI 495

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           D A  +   M + G  P    Y +L+D      R++ A ++   M  + C  +V +Y  +
Sbjct: 496 DNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAM 555

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           I+G C+  E + AL L S M  KG  P VVTY  
Sbjct: 556 IDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTA 589



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 158/338 (46%), Gaps = 42/338 (12%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F+  ++  + P++ TY  LI+  CK  +V     +L  +L +   P+ + + +LI G C 
Sbjct: 432 FEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCK 491

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
             +I  A  +F ++   G  P V TYT+LI+ + +     +A+ +  +M   +      C
Sbjct: 492 VGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESS------C 545

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            P+ +TY+ + DGLC+ G   KA +L   M+++  +P+VVTYT+LI G   +   + +  
Sbjct: 546 TPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQ 605

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI----------------- 262
           LFI+M  +G  PN VT+ V++N  C  G +DEA  LL  M Q                  
Sbjct: 606 LFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFS 665

Query: 263 ----------------GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS- 305
                           G  P A VY  L+D F   GR+  A EL   M       ++ S 
Sbjct: 666 KKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSK 725

Query: 306 --YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             Y  LI   C   ++E A  LYSE+  KG+ P +  +
Sbjct: 726 DMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVF 763



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 166/363 (45%), Gaps = 29/363 (7%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I + M++   +P P   FN L       + Y     L KR+   G  P    YNI I   
Sbjct: 164 IINMMMKEGCNPNPSL-FNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSI 222

Query: 63  CKMGRV-SPGFVVLGR-----ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
           C    + SP  + L       +L S    + V   +  + LC   +   A  +   +   
Sbjct: 223 CGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGK 282

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G  PD  TY+ +I  LC       A  LF+EM +      V   PD  TY+ + D  CK 
Sbjct: 283 GFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKS------VGVNPDVYTYTILIDSFCKA 336

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +++A+  F +M+    + +VVTYT+L+  +  A    +A  +F  M+D G  PN +T+
Sbjct: 337 GLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITY 396

Query: 237 NVIMNELCKNGKMDEA----SRLLELMIQIG------------VRPDASVYNTLMDGFCL 280
           + +++ LCK G++ +A    ++L+     +G            + P+   Y  L+DG C 
Sbjct: 397 SALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCK 456

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
             +V  A+EL  +M SNGC  +   Y  LI+G+CK  +I+ A  ++  M   G  PTV T
Sbjct: 457 AHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHT 516

Query: 341 YNT 343
           Y +
Sbjct: 517 YTS 519



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 160/335 (47%), Gaps = 12/335 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D ML     P  +  ++ L     K    D    +F R++  G  P ++TY  LI+  
Sbjct: 466 LLDAMLSNGCEPNHII-YDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAM 524

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K  R+     VL +++ S  TP+ VT+T++I GLC      +A  L + +   GC P+V
Sbjct: 525 FKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNV 584

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TYT LI+GL ++G   ++L LF +M+         C P+ +TY  + +  C  G +D+A
Sbjct: 585 VTYTALIDGLGKSGKVDLSLQLFIQMSTKG------CAPNYVTYRVLINHCCAAGLLDEA 638

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L  +MK       +  Y S+++GF  +  +  +  L  E+   G  P    + ++++ 
Sbjct: 639 HSLLSEMKQTYWPKYLQGYCSVVQGF--SKKFIASLGLLEELESHGTVPIAPVYGLLIDN 696

Query: 243 LCKNGKMDEASRLLELMIQIGVR---PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
             K G+++EA  L + M+++          +Y +L+   CL  ++ +A EL+  +   G 
Sbjct: 697 FSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGV 756

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + ++  +  LI G  K  +   AL L   +  +G+
Sbjct: 757 VPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGV 791



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 149/370 (40%), Gaps = 50/370 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   LA     D    + K ++  G   D +T        CK GR S   V+
Sbjct: 38  PSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVM 97

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I R  F  D V  T +I GL   S   EA +   ++R   C P+V TY TL+ G  +
Sbjct: 98  ---IEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLK 154

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  L   + + N   + G  C P+   ++++    C       A +L  +M D   
Sbjct: 155 KKQ----LGWCKRIINMMMKEG--CNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGC 208

Query: 195 NPDVVTYTSLIRGFC-----------------------------YANDWNEAKCL----- 220
            P  V Y   I   C                               N  N A+CL     
Sbjct: 209 PPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGK 268

Query: 221 -------FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
                     MM +G  P+  T++ ++  LC+  K+++A  L + M  +GV PD   Y  
Sbjct: 269 FDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTI 328

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+D FC  G + +A+  F  M S GC  +V +Y  L++ Y K K++  A  +++ M+  G
Sbjct: 329 LIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAG 388

Query: 334 IRPTVVTYNT 343
             P  +TY+ 
Sbjct: 389 CPPNTITYSA 398



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 140/334 (41%), Gaps = 30/334 (8%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           +D  +S   R+      P++ TY  L+  F K  ++     ++  +++    P+   F S
Sbjct: 123 FDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNS 182

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI-------VALNLF 145
           L+   C       A  L  ++   GC P    Y   I  +C  G  +       +A  ++
Sbjct: 183 LVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSIC-GGEELPSPDLLALAEKVY 241

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
           EEM          C  + +  +     LC  G  D A ++   M  +   PD  TY+ +I
Sbjct: 242 EEM------LASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVI 295

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
              C A    +A  LF EM   GV P+V T+ ++++  CK G +++A    + M  IG  
Sbjct: 296 TFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCS 355

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
            +   Y  L+  +    ++ +A ++F  M   GC  +  +Y  L++G CK  EI+ A  +
Sbjct: 356 ANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEV 415

Query: 326 YSEML----------------SKGIRPTVVTYNT 343
           Y++++                +  I P VVTY  
Sbjct: 416 YTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGA 449



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 15/226 (6%)

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
           +L+ FG +P   TY  L+  L   G   +   + +EM+         C  D  T      
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESG-----FCM-DKFTVGCFAQ 83

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
            LCKEG   +  +  + ++ E+   D V  T +I G   A+ ++EA      M      P
Sbjct: 84  ALCKEG---RWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIP 140

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           NVVT+  ++    K  ++    R++ +M++ G  P+ S++N+L+  +C       A +L 
Sbjct: 141 NVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLL 200

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEG------ALSLYSEMLS 331
             M   GC     +Y I I   C  +E+        A  +Y EML+
Sbjct: 201 KRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLA 246



 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           E+ D G +P+  T+N ++  L   G+MD   R+ + M + G   D           C  G
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           R + A    V +E      D      +I+G  +    + A+S    M      P VVTY 
Sbjct: 90  RWSDA---LVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYR 146

Query: 343 T 343
           T
Sbjct: 147 T 147


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 166/325 (51%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           SFNIL         +   + +  ++   G  PD  TYN +++  CK GR++    +L  +
Sbjct: 199 SFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDM 258

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+  TF  L+ G C    + EAA +   +      PD +TY  +I+G C+ G  
Sbjct: 259 KNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRI 318

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+ L EEM N      +   PD +TY+T+ +G  + G  ++  +L  +M+   + P+ 
Sbjct: 319 AEAMRLREEMEN------LKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNS 372

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY  +++ F      +E      +M + G  P++VT+N +++  CK GKMDEA RL++ 
Sbjct: 373 VTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDE 432

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + G++ D    NT++   C   +++ A +L  S    G   D  SYG LI GY K+++
Sbjct: 433 MGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEK 492

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
              AL L+ EM  K I P+++TYN+
Sbjct: 493 ASQALRLWDEMKEKEIIPSIITYNS 517



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 175/371 (47%), Gaps = 41/371 (11%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R +  PP   ++N +   L K    +    L   + + GLFP+  T+NIL+   C++G 
Sbjct: 223 MRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGW 282

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     V+  + ++   PDA T+  +I G C + RI EA  L  ++      PDV TY T
Sbjct: 283 LKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNT 342

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LING    G +     L EEM       G   KP+++TY+ +     K+G +D+  +   
Sbjct: 343 LINGCFEHGSSEEGFKLIEEME------GRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVR 396

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           KM++    PD+VTY +LI   C     +EA  L  EM  +G++ + VT N ++  LC+  
Sbjct: 397 KMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRER 456

Query: 248 KMDEAS-----------------------------------RLLELMIQIGVRPDASVYN 272
           K+DEA                                    RL + M +  + P    YN
Sbjct: 457 KLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYN 516

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           +++ G C  G+ N+A +    +  +G + D  +Y  +I+GYC+  ++E A   +++M+ K
Sbjct: 517 SMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEK 576

Query: 333 GIRPTVVTYNT 343
             +P VVT NT
Sbjct: 577 NFKPDVVTCNT 587



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 169/329 (51%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N++     K       + L + + ++ L PD+ TYN LIN   + G    GF +
Sbjct: 300 PDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKL 359

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      P++VT+  ++K    + ++ E      K+   GC PD+ TY TLI+  C+
Sbjct: 360 IEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCK 419

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L +EM    G  G+  K D +T +T+   LC+E  +D+A +L    +    
Sbjct: 420 VGKMDEAFRLMDEM----GRKGL--KMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGY 473

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V+Y +LI G+      ++A  L+ EM ++ + P+++T+N ++  LC+ GK ++A  
Sbjct: 474 FVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAID 533

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ +++ G+ PD   YNT++ G+C  G+V +A +    M       DV +   L+ G C
Sbjct: 534 KLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLC 593

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +E AL L++  +SKG     V+YNT
Sbjct: 594 KEGMLEKALKLFNTWISKGKDVDAVSYNT 622



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 156/319 (48%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N++     K    D V    +++   G  PD+ TYN LI+  CK+G++   F +
Sbjct: 370 PNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRL 429

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + R     D VT  ++++ LC E ++ EA  L    R  G   D  +Y TLI G  +
Sbjct: 430 MDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFK 489

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L++EM     E  ++  P  ITY+++  GLC+ G  ++A +   ++ +  +
Sbjct: 490 HEKASQALRLWDEMK----EKEII--PSIITYNSMIAGLCQMGKTNQAIDKLDELLESGL 543

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +TY ++I G+C      +A     +M+++  +P+VVT N ++  LCK G +++A +
Sbjct: 544 VPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALK 603

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L    I  G   DA  YNT++   C   R   A +L   ME      D ++Y  ++ G  
Sbjct: 604 LFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLT 663

Query: 315 KNKEIEGALSLYSEMLSKG 333
               ++ A    S++  KG
Sbjct: 664 DAGRMKDAEEFISKIAEKG 682



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 9/244 (3%)

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR--TGHTI-VALNLFEEMANGNGEFGVV 158
           R  +AA +F +++  G +P + T  TL+N L R  + H+I ++  +F +      + GV 
Sbjct: 139 RPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFI----KIGV- 193

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
            K +  +++ +  G C E    +A  +  KM+D    PD +TY +++ G C     NEA+
Sbjct: 194 -KINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEAR 252

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L ++M ++G+ PN  TFN+++   C+ G + EA+ ++ELM Q  V PDA  YN ++ GF
Sbjct: 253 DLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGF 312

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  GR+  A  L   ME+     DV +Y  LING  ++   E    L  EM  +G++P  
Sbjct: 313 CKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNS 372

Query: 339 VTYN 342
           VTYN
Sbjct: 373 VTYN 376



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 155/327 (47%), Gaps = 46/327 (14%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC---AESRIMEAAALFTK 112
           +I I  +   GR      +  R+ R    P  +T  +L+  L    +   I  + A+FT 
Sbjct: 128 DISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTD 187

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
               G K +  ++  LI+G C       A+ +  +M     ++G  C PD ITY+TI DG
Sbjct: 188 FIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMR----DYG--CPPDNITYNTILDG 241

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQP 231
           LCK+G +++A++L L MK++ + P+  T+  L+ G C    W +     IE+M Q  V P
Sbjct: 242 LCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLG-WLKEAANVIELMSQNSVVP 300

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG-------------- 277
           +  T+NV+++  CK G++ EA RL E M  + + PD   YNTL++G              
Sbjct: 301 DAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLI 360

Query: 278 ---------------------FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
                                F   G+++   +    ME +GC+ D+ +Y  LI+ +CK 
Sbjct: 361 EEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKV 420

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +++ A  L  EM  KG++   VT NT
Sbjct: 421 GKMDEAFRLMDEMGRKGLKMDDVTLNT 447



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 29/243 (11%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           K++     L L+  +    + P + TYN +I   C+MG+ +     L  +L S   PD +
Sbjct: 489 KHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEI 548

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           T+ ++I G C E ++ +A     K+     KPDV T  TL+ GLC+ G    AL LF   
Sbjct: 549 TYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTW 608

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
            +   +       DA++Y+TI   LCKE    +A +L  +M+++ + PD  TY +++ G 
Sbjct: 609 ISKGKDV------DAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGL 662

Query: 209 CYANDWNEAKCLFIEMMDQGV-----------------------QPNVVTFNVIMNELCK 245
             A    +A+    ++ ++G                         PN + ++  +NELC 
Sbjct: 663 TDAGRMKDAEEFISKIAEKGKSENQFLELGKRQDARTSEIPQEPHPNAIAYSNKINELCS 722

Query: 246 NGK 248
            G+
Sbjct: 723 QGR 725


>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
          Length = 1765

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 165/322 (51%), Gaps = 6/322 (1%)

Query: 22   ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
            +L   L   +  +  L L +     G  P +  YN+LI+ +C+ G +  G ++LG +   
Sbjct: 1152 VLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETK 1211

Query: 82   CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
             F P  VT+ SLI  L  +  + +  +LF ++R  G  P+V  Y ++I+ LC+      A
Sbjct: 1212 GFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQA 1271

Query: 142  LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
            + + ++M      F   C PD IT++T+  GLC EG V KA+    +     +NP+ ++Y
Sbjct: 1272 MVILKQM------FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSY 1325

Query: 202  TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            T LI GFC   +   A  L +EMM +G  P+VVTF  +++ L   GK+ EA  + E M +
Sbjct: 1326 TPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTE 1385

Query: 262  IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
              V PD ++YN L+ G C    +  AK +   M       D F Y  LI+G+ +++ +  
Sbjct: 1386 RQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGD 1445

Query: 322  ALSLYSEMLSKGIRPTVVTYNT 343
            A  ++  M  KGI P +V+ N 
Sbjct: 1446 ARKIFEFMEHKGICPDIVSCNA 1467



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 162/327 (49%), Gaps = 6/327 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V  +N +   L K +     + + K++ + G  PD+ T+N LI   C  G V      
Sbjct: 1250 PNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHF 1309

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L   +R    P+ +++T LI G C    +M A+ L  ++   G  PDV T+  LI+GL  
Sbjct: 1310 LREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVV 1369

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G    AL + E+M            PD   Y+ +  GLCK+  +  AK +  +M ++N+
Sbjct: 1370 AGKVSEALIVREKMTERQ------VFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNV 1423

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PD   Y +LI GF  + +  +A+ +F  M  +G+ P++V+ N ++   C+ G M EA  
Sbjct: 1424 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAIL 1483

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             +  M ++G  PD   Y T++ G+   G +N A      M    C  +V +Y  LINGYC
Sbjct: 1484 CMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYC 1543

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTY 341
            K  + + A  L++ M ++ + P VVTY
Sbjct: 1544 KTGDTDFAEGLFANMQAEALSPNVVTY 1570



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 162/329 (49%), Gaps = 6/329 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + ++  L   L K    + + SLF  +   G  P++  YN +I+  CK    +   V+
Sbjct: 1215 PTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVI 1274

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L ++  S   PD +TF +LI GLC E  + +A     +       P+  +YT LI+G C 
Sbjct: 1275 LKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCM 1334

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G  +VA +L  EM  G G       PD +T+  +  GL   G V +A  +  KM +  +
Sbjct: 1335 RGELMVASDLLVEMM-GRGH-----TPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 1388

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PDV  Y  LI G C       AK +  EM+++ VQP+   +  +++   ++  + +A +
Sbjct: 1389 FPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARK 1448

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            + E M   G+ PD    N ++ G+C  G ++ A     +M   GC+ D F+Y  +I+GY 
Sbjct: 1449 IFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYA 1508

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K   + GAL    +M+ +  +P VVTY++
Sbjct: 1509 KQGNLNGALRWLCDMIKRKCKPNVVTYSS 1537



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 156/328 (47%), Gaps = 6/328 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + +FN L   L    H        +      L P+  +Y  LI+ FC  G +     +
Sbjct: 1285 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDL 1344

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L  ++    TPD VTF +LI GL    ++ EA  +  K+      PDV  Y  LI+GLC+
Sbjct: 1345 LVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 1404

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  A N+ EEM   N       +PD   Y+T+ DG  +   +  A+++F  M+ + I
Sbjct: 1405 KRMLPAAKNILEEMLEKN------VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGI 1458

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PD+V+  ++I+G+C     +EA      M   G  P+  T+  +++   K G ++ A R
Sbjct: 1459 CPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALR 1518

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             L  MI+   +P+   Y++L++G+C TG  + A+ LF +M++     +V +Y ILI    
Sbjct: 1519 WLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLF 1578

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            K  ++  A   +  ML     P  VT +
Sbjct: 1579 KKDKVLRAGLYFETMLLNHCSPNDVTLH 1606



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 152/355 (42%), Gaps = 25/355 (7%)

Query: 3    IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
            + + M R H   P V +F  L   L         L + +++    +FPD+  YN+LI+  
Sbjct: 1345 LVEMMGRGHT--PDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGL 1402

Query: 63   CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            CK   +     +L  +L     PD   + +LI G      + +A  +F  +   G  PD+
Sbjct: 1403 CKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDI 1462

Query: 123  FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             +   +I G C+ G    A+     M        V C PD  TY+T+  G  K+G ++ A
Sbjct: 1463 VSCNAMIKGYCQFGMMSEAILCMSNMRK------VGCIPDEFTYTTVISGYAKQGNLNGA 1516

Query: 183  KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
                  M      P+VVTY+SLI G+C   D + A+ LF  M  + + PNVVT+ +++  
Sbjct: 1517 LRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGS 1576

Query: 243  LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF------------CLTGRVNRAKEL 290
            L K  K+  A    E M+     P+    + L++G             C T  V+    L
Sbjct: 1577 LFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDAL 1636

Query: 291  FVSMES----NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             V  +      G  R+  +Y  +I   C++  +  AL   + M  KG  P  +T+
Sbjct: 1637 LVVFKKLVFDIGDPRNS-AYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITF 1690



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 143/365 (39%), Gaps = 59/365 (16%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V  +N+L   L K +      ++ + +    + PD + Y  LI+ F +   +     +
Sbjct: 1390 PDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKI 1449

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               +      PD V+  ++IKG C    + EA    + +R  GC PD FTYTT+I+G  +
Sbjct: 1450 FEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAK 1509

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G+   AL    +M          CKP+ +TYS++ +G CK G  D A+ LF  M+ E +
Sbjct: 1510 QGNLNGALRWLCDMIKRK------CKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEAL 1563

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT------------------- 235
            +P+VVTYT LI      +    A   F  M+     PN VT                   
Sbjct: 1564 SPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSI 1623

Query: 236  -------------------------------FNVIMNELCKNGKMDEASRLLELMIQIGV 264
                                           +N I+  LC++  + EA      M + G 
Sbjct: 1624 CCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGY 1683

Query: 265  RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK---EIEG 321
             P+   + +L+ GFC  G+    + +  +         +F Y  L + Y       E+  
Sbjct: 1684 VPNPITFLSLLYGFCSVGKSVNWRTILPNEFQQEEFEIIFRYKFLFDQYATESVCCEVSR 1743

Query: 322  ALSLY 326
             L  Y
Sbjct: 1744 VLQQY 1748



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 107/259 (41%), Gaps = 7/259 (2%)

Query: 84   TPDAVTFTSLIKGLCAESRIMEAAALFTKLR-AFGCKPDVFTYTTLINGLCRTGHTIVAL 142
             P      +L+        + +A  +  ++R  +G  P+V     L+  L        A 
Sbjct: 1073 APTRACLGALVAAYADAGMLGKATKMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDAR 1132

Query: 143  NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
             L++EM       G     D  +   +  GLC E  V++  +L          P VV Y 
Sbjct: 1133 KLYDEM------LGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYN 1186

Query: 203  SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
             LI G+C   D      L  EM  +G  P +VT+  ++N L K G +++   L   M + 
Sbjct: 1187 VLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKR 1246

Query: 263  GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
            G  P+  +YN+++D  C      +A  +   M ++GC  D+ ++  LI G C    +  A
Sbjct: 1247 GFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKA 1306

Query: 323  LSLYSEMLSKGIRPTVVTY 341
                 E + + + P  ++Y
Sbjct: 1307 EHFLREAIRRELNPNQLSY 1325



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 1/168 (0%)

Query: 177  GFVDKAKELFLKMKDENIN-PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
            G + KA ++  +++++  + P+V     L++       W++A+ L+ EM+ +    +  +
Sbjct: 1090 GMLGKATKMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYS 1149

Query: 236  FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
              V++  LC   +++E  +L+E     G  P    YN L+DG+C  G + R   L   ME
Sbjct: 1150 TCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEME 1209

Query: 296  SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + G +  + +YG LIN   K  ++E   SL+ EM  +G  P V  YN+
Sbjct: 1210 TKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNS 1257



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%)

Query: 173  LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            L ++   D A++L+ +M  ++   D  +   L+RG C      E   L       G  P+
Sbjct: 1122 LVEQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPH 1181

Query: 233  VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
            VV +NV+++  C+ G M     LL  M   G  P    Y +L++     G + +   LF+
Sbjct: 1182 VVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFL 1241

Query: 293  SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M   G   +V  Y  +I+  CK +    A+ +  +M + G  P ++T+NT
Sbjct: 1242 EMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNT 1292


>gi|255660966|gb|ACU25652.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 376

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 167/325 (51%), Gaps = 6/325 (1%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
            V SFNI+   L  N   D V+S+++ +   G   D  TY IL++ FCK G +     VL
Sbjct: 58  SVSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL 117

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
               +     DA  ++++I GLC E+ +  A ++   +   GCKP+V  Y TLINGL   
Sbjct: 118 EMAEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGA 177

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A+ +F EM        + C P  ITY+T+ +GLCK     +A  L  ++ D+ ++
Sbjct: 178 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLD 231

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P V+TY+ L++G C  +    A  L+ +++ +G +P+V   N++++ LC  GKM  A  L
Sbjct: 232 PGVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKMQLALSL 291

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M +    P+   +NTLM+GF   G +  A  ++  +  NG   D+ SY I + G C 
Sbjct: 292 YFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALMIWARILRNGLEPDIISYNITLKGLCS 351

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVT 340
              I  A+    + ++K I PT +T
Sbjct: 352 CNRISDAILFLHDAVTKKIVPTKIT 376



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 151/289 (52%), Gaps = 6/289 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           ++NI++      G+V     +   +  S F  D++T+  L+ G C    I ++  +    
Sbjct: 61  SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              G   D F Y+ +INGLC+  +   AL++       NG     CKP+   Y+T+ +GL
Sbjct: 121 EQKGGVLDAFAYSAMINGLCKEANLDRALSVL------NGMIKSGCKPNVHVYNTLINGL 174

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
                 + A  +F +M   + +P ++TY +LI G C    + EA  L  E++D+G+ P V
Sbjct: 175 AGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGV 234

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           +T++++M  LC + K++ A +L   +I  G +PD  ++N L+ G C  G++  A  L+  
Sbjct: 235 ITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKMQLALSLYFD 294

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M    C  ++ S+  L+ G+ K+ +I  AL +++ +L  G+ P +++YN
Sbjct: 295 MNRWKCAPNLVSHNTLMEGFYKDGDIRNALMIWARILRNGLEPDIISYN 343



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 161/310 (51%), Gaps = 7/310 (2%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D    ++K +    + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNIM 65

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++GL    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++ E MA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE-MAEQKG 124

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
             GV+   DA  YS + +GLCKE  +D+A  +   M      P+V  Y +LI G   A+ 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASK 179

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +F EM      P ++T+N ++N LCKN    EA  L++ ++  G+ P    Y+ 
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSM 239

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           LM G CL  +V RA +L+  + S G   DV  + ILI+G C   +++ ALSLY +M    
Sbjct: 240 LMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWK 299

Query: 334 IRPTVVTYNT 343
             P +V++NT
Sbjct: 300 CAPNLVSHNT 309



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 114/221 (51%), Gaps = 6/221 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   LA    ++  + +F+ + ++   P + TYN LIN  CK       + +
Sbjct: 162 PNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNL 221

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L     P  +T++ L+KGLC + ++  A  L+ ++ + G KPDV  +  LI+GLC 
Sbjct: 222 VKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCS 281

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +AL+L+ +M          C P+ ++++T+ +G  K+G +  A  ++ ++    +
Sbjct: 282 VGKMQLALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDGDIRNALMIWARILRNGL 335

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
            PD+++Y   ++G C  N  ++A     + + + + P  +T
Sbjct: 336 EPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVPTKIT 376



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 11/247 (4%)

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFG 156
           C    I  A  ++ ++      PD   Y  ++NG  R         L+E M + GN    
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVS 60

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
                   +++ +  GL   G VD+   ++  MK+     D +TY  L+ GFC  N + +
Sbjct: 61  --------SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFC-KNGYID 111

Query: 217 AKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
                +EM +Q G   +   ++ ++N LCK   +D A  +L  MI+ G +P+  VYNTL+
Sbjct: 112 KSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLI 171

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +G     +   A  +F  M +  C   + +Y  LING CKN+    A +L  E+L KG+ 
Sbjct: 172 NGLAGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLD 231

Query: 336 PTVVTYN 342
           P V+TY+
Sbjct: 232 PGVITYS 238



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G +D A+ ++ ++ +  ++PD V Y +++ G+       +   L+ EMM      +V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELW-EMMGSEGNRSV 59

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            +FN++M  L  NGK+DE   + ELM + G   D+  Y  L+ GFC  G ++++  +   
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            E  G + D F+Y  +ING CK   ++ ALS+ + M+  G +P V  YNT
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNT 169


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 173/370 (46%), Gaps = 46/370 (12%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYD------------------------TVL---------- 37
           PS     S+N +   L +  H+D                        TVL          
Sbjct: 72  PSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLA 131

Query: 38  ----SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
                L + + S G+  D+ TY  LI   C    V     ++G +  S   P+ V ++SL
Sbjct: 132 DQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSL 191

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++G C   R  +   +F ++   G +PDV  YT LI+ LC+ G    A  + + M     
Sbjct: 192 LQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGL 251

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           E      P+ +TY+ + + +CKEG V +A  +  KM ++ + PDVVTY +LI+G     +
Sbjct: 252 E------PNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLE 305

Query: 214 WNEAKCLFIEMMDQG--VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            +EA  L  EM+     V+PNVVTFN ++  LC  G+M +A ++  +M + G   +   Y
Sbjct: 306 MDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTY 365

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N L+ G     +V +A EL   M S G   D F+Y ILI G+CK  +++ A  L S M  
Sbjct: 366 NLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRD 425

Query: 332 KGIRPTVVTY 341
           +GI P +  Y
Sbjct: 426 RGIEPELFHY 435



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 169/334 (50%), Gaps = 10/334 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+R     P V ++N+L  C+ K       + + K+++  G+ PD+ TYN LI   
Sbjct: 242 VMDMMVR-RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 63  CKMGRVSPGFVVLGRILR--SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             +  +     +L  ++R  +   P+ VTF S+I+GLC   R+ +A  +   +   GC  
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMV 360

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           ++ TY  LI GL R      A+ L +EM +     G+  +PD+ TYS +  G CK   VD
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMTS----LGL--EPDSFTYSILIKGFCKMWQVD 414

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A++L   M+D  I P++  Y  L+   C       A+ LF EM D     +VV ++ ++
Sbjct: 415 RAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMI 473

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G +  A  LL+ ++  G+ PDA  Y+ +++ F  +G +  A  +   M ++G +
Sbjct: 474 HGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFL 533

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            DV  +  LI GY    EI   L L  EM++K I
Sbjct: 534 PDVAVFDSLIQGYSTKGEINKVLELIREMITKNI 567



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 167/364 (45%), Gaps = 40/364 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ L     K+  ++ V  +F  ++  G+ PD+  Y  LI+  CK+G+      V
Sbjct: 183 PNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGV 242

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  ++R    P+ VT+  LI  +C E  + EA  +  K+   G  PDV TY TLI GL  
Sbjct: 243 MDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC-----KEGF----------- 178
                 A+ L EEM  G      + KP+ +T++++  GLC     ++ F           
Sbjct: 303 VLEMDEAMWLLEEMVRGKN----IVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGC 358

Query: 179 -------------------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                              V KA EL  +M    + PD  TY+ LI+GFC     + A+ 
Sbjct: 359 MVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAED 418

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           L   M D+G++P +  +  ++  +C+ G M+ A  L   M       D   Y+T++ G C
Sbjct: 419 LLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVVAYSTMIHGAC 477

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G +  AKEL  S+   G   D  +Y I+IN + K+ ++E A  +  +M + G  P V 
Sbjct: 478 KAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVA 537

Query: 340 TYNT 343
            +++
Sbjct: 538 VFDS 541



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 169/360 (46%), Gaps = 44/360 (12%)

Query: 8   LRMHPS-PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           L  HP+  P   S+ +L   L  ++  D  + L + + S G+  D+ TY  LI   C   
Sbjct: 105 LEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAA 164

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            V     ++G +  S   P+ V ++SL++G C   R  +   +F ++   G +PDV  YT
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI+ LC+ G    A  + + M     E      P+ +TY+ + + +CKEG V +A  + 
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLE------PNVVTYNVLINCMCKEGSVKEAIGVL 278

Query: 187 LKMKDENINPDVVTYTSL-------------------------------------IRGFC 209
            KM ++ + PDVVTY +L                                     I+G C
Sbjct: 279 KKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLC 338

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                 +A  +   M + G   N+VT+N+++  L +  K+ +A  L++ M  +G+ PD+ 
Sbjct: 339 DIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSF 398

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y+ L+ GFC   +V+RA++L  +M   G   ++F Y  L+   C+   +E A +L++EM
Sbjct: 399 TYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM 458



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 141/266 (53%), Gaps = 17/266 (6%)

Query: 86  DAVTFTSLIKGLCAESRIMEAAALFTKLRAF------GCKPDVFTYTTLINGLCRTGHTI 139
           DAV++ +++  LC       A AL   LRA        C+P+  +YT L+  LC      
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGAL---LRAMSLEPHPACRPNAVSYTVLMRALCADRLAD 132

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A+ L   M +         + D +TY T+  GLC    VDKA EL  +M +  I P+VV
Sbjct: 133 QAVGLLRSMRSAG------VRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVV 186

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            Y+SL++G+C +  W +   +F+EM ++G++P+VV +  +++ LCK GK  +A  ++++M
Sbjct: 187 VYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMM 246

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           ++ G+ P+   YN L++  C  G V  A  +   M   G   DV +Y  LI G     E+
Sbjct: 247 VRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEM 306

Query: 320 EGALSLYSEMLSKG--IRPTVVTYNT 343
           + A+ L  EM+     ++P VVT+N+
Sbjct: 307 DEAMWLLEEMVRGKNIVKPNVVTFNS 332



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 128/242 (52%), Gaps = 3/242 (1%)

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
           R++      + L A     D  +Y T++  LCR GH   A  L   M+    E    C+P
Sbjct: 57  RLLPLGEATSLLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSL---EPHPACRP 113

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           +A++Y+ +   LC +   D+A  L   M+   +  DVVTY +LIRG C A + ++A  L 
Sbjct: 114 NAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELM 173

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            EM + G++PNVV ++ ++   CK+G+ ++  ++   M + G+ PD  +Y  L+D  C  
Sbjct: 174 GEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKV 233

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G+  +A  +   M   G   +V +Y +LIN  CK   ++ A+ +  +M  KG+ P VVTY
Sbjct: 234 GKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTY 293

Query: 342 NT 343
           NT
Sbjct: 294 NT 295


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 152/287 (52%), Gaps = 7/287 (2%)

Query: 58   LINCFCKMGRVSPGFVVLGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116
            L+   CK G+    + V  ++ +S C TP    + SLI GL        A  LF K++  
Sbjct: 758  LVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNA 817

Query: 117  GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
            GC PDVFTY   ++ L ++G      +L+EEM          CKP+ IT++ +  GL K 
Sbjct: 818  GCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRG------CKPNTITHNIVIFGLVKS 871

Query: 177  GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
              +DKA +L+  +   + +P   TY  LI G        EAK  F EM+D G  PN   +
Sbjct: 872  NSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLY 931

Query: 237  NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            N++MN   K G ++ A  L   M++ G+RPD   Y+ ++D  C+ G+V+ A   F  ++ 
Sbjct: 932  NILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKL 991

Query: 297  NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +G   D+  Y ++ING  +++ +E ALSL+ EM ++GI P + TYN 
Sbjct: 992  SGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNA 1038



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 175/354 (49%), Gaps = 24/354 (6%)

Query: 7   MLRMHPSPPP-VCSFNILFGCLAKNKHYDTVLSLFK----------------RLNSIGLF 49
           MLR H      V  FN++   + K +  +T L++FK                ++  +G  
Sbjct: 131 MLRAHRRVEDMVVVFNLMQKQIIK-RSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFV 189

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
            + Y+Y  LI+   K G       V  R++     P   T+++L+  L     I     L
Sbjct: 190 LNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGL 249

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             ++ + G +P+++T+T  I  L R G    A  + + M +        C PD +TY+ +
Sbjct: 250 LQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAG------CGPDVVTYTVL 303

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            D LC  G ++ AKELFLKMK  +  PD VTY +L+  F    D +  K  + EM   G 
Sbjct: 304 IDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGY 363

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            P+VVTF ++++ LCK GK+DEA   L++M + GV P+   YNTL+ G     R++ A E
Sbjct: 364 LPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALE 423

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LF SMES G     ++Y + I+ Y K+ E   A+  + +M + GI P +V  N 
Sbjct: 424 LFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNA 477



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 170/338 (50%), Gaps = 8/338 (2%)

Query: 8   LRMHPSP--PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           L+M  S   P   ++  L    + +   D +   +  + + G  PD+ T+ ILI+  CK+
Sbjct: 321 LKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKV 380

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G+V   F  L  + +    P+  T+ +LI GL   +R+ EA  LF  + + G +   +TY
Sbjct: 381 GKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTY 440

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
              I+   ++G +  A+  FE+M   NG    +   +A  YS     L ++G +++AKE 
Sbjct: 441 ILFIDYYGKSGESGKAIKTFEKMKT-NGIVPNIVACNASLYS-----LAEQGRLEEAKEF 494

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F  +K   + PD +TY  L+R +  A   ++A  L  EM + G  P VV  N +++ L K
Sbjct: 495 FNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYK 554

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
             ++DEA ++ + M ++ + P    YNTL+ G    GRV  A  LF  M ++ C  +  S
Sbjct: 555 ADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTIS 614

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  L++  CKN E++ AL +   M      P V+TYNT
Sbjct: 615 FNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNT 652



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 169/327 (51%), Gaps = 6/327 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + ++N L   L K +  +    LF ++ + G  PD++TYN+ ++   K G++   F +
Sbjct: 786  PSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDL 845

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               +L     P+ +T   +I GL   + + +A  L+  L +    P  +TY  LI+GL +
Sbjct: 846  YEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLK 905

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G    A   FEEM     ++G  C P+   Y+ + +G  K+G V+ A ELF +M  E I
Sbjct: 906  LGRLEEAKQFFEEML----DYG--CMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGI 959

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PD+ +Y+ ++   C     ++A   F E+   G+ P++V +N+++N L ++ +++EA  
Sbjct: 960  RPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALS 1019

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L + M   G+ PD   YN L+    + G V  A +++  ++  G   +VF+Y  LI G+ 
Sbjct: 1020 LFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHS 1079

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +   + A ++Y +M+  G RP   T+
Sbjct: 1080 MSGNPDRAYAVYKKMMVGGCRPNTGTF 1106



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 162/365 (44%), Gaps = 42/365 (11%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   SFN L  CL KN   D  L +  R+  +  FPD+ TYN +I    K  RV+  F 
Sbjct: 609 PPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFW 668

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK-LRAFGCKPDVFTYTTLING- 131
           +  + ++    PD VT  +L+ G+  + RI +A  +  + +   G   D   +  L+ G 
Sbjct: 669 LFHQ-MKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGI 727

Query: 132 ----------------------------------LCRTGHTIVALNLFEEMANGNGEFGV 157
                                             LC+ G  + A N+F ++         
Sbjct: 728 LIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTK-----SF 782

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
              P    Y+++ DGL K    + A  LF KMK+    PDV TY   +     +    E 
Sbjct: 783 CITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKEL 842

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             L+ EM+ +G +PN +T N+++  L K+  +D+A  L   ++     P    Y  L+DG
Sbjct: 843 FDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDG 902

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
               GR+  AK+ F  M   GCM +   Y IL+NG+ K  ++E A  L+  M+ +GIRP 
Sbjct: 903 LLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPD 962

Query: 338 VVTYN 342
           + +Y+
Sbjct: 963 LKSYS 967



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 153/324 (47%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  L   L K+      L +++R+ S G+ P L TY+ L+    K   +     +L  +
Sbjct: 194 SYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEM 253

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+  TFT  I+ L    +I EA  +  ++   GC PDV TYT LI+ LC  G  
Sbjct: 254 ESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKL 313

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LF +M   +       KPD +TY T+ D     G +D  KE + +M+ +   PDV
Sbjct: 314 NNAKELFLKMKASSH------KPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDV 367

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VT+T LI   C     +EA      M  QGV PN+ T+N ++  L +  ++DEA  L   
Sbjct: 368 VTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNS 427

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M  +G+   A  Y   +D +  +G   +A + F  M++NG + ++ +    +    +   
Sbjct: 428 MESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGR 487

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           +E A   ++ +   G+ P  +TYN
Sbjct: 488 LEEAKEFFNGLKKCGLAPDAITYN 511



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 145/306 (47%), Gaps = 6/306 (1%)

Query: 6    YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
            Y ++     P V ++N+    L K+     +  L++ +   G  P+  T+NI+I    K 
Sbjct: 812  YKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKS 871

Query: 66   GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
              +     +   ++   F+P   T+  LI GL    R+ EA   F ++  +GC P+   Y
Sbjct: 872  NSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLY 931

Query: 126  TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
              L+NG  + G    A  LF  M           +PD  +YS + D LC  G VD A   
Sbjct: 932  NILMNGFGKQGDVETACELFRRMVKEG------IRPDLKSYSIMVDCLCMVGKVDDALHY 985

Query: 186  FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
            F ++K   ++PD+V Y  +I G   +    EA  LF EM ++G+ P++ T+N ++  L  
Sbjct: 986  FEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGI 1045

Query: 246  NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
             G ++EA ++ E +   G+ P+   YN L+ G  ++G  +RA  ++  M   GC  +  +
Sbjct: 1046 AGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGT 1105

Query: 306  YGILIN 311
            +  L N
Sbjct: 1106 FAQLPN 1111



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 141/308 (45%), Gaps = 10/308 (3%)

Query: 40  FKRLNSIGLFPDLY----TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
           F   NS+   P +     T N ++       RV    VV   + +        T+ ++ K
Sbjct: 106 FSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFK 165

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
            L     + EA     K+R  G   + ++Y  LI+ L ++G    AL ++  M +     
Sbjct: 166 VLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEG--- 222

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
               KP   TYS +   L K   ++    L  +M+   + P++ T+T  IR    A   +
Sbjct: 223 ---IKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKID 279

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA  +   M D G  P+VVT+ V+++ LC  GK++ A  L   M     +PD   Y TL+
Sbjct: 280 EAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLL 339

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           D F   G ++  KE +  ME++G + DV ++ ILI+  CK  +++ A      M  +G+ 
Sbjct: 340 DKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVA 399

Query: 336 PTVVTYNT 343
           P + TYNT
Sbjct: 400 PNLHTYNT 407



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 7/230 (3%)

Query: 13   SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
            SP P  ++  L   L K    +     F+ +   G  P+   YNIL+N F K G V    
Sbjct: 890  SPTP-WTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETAC 948

Query: 73   VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
             +  R+++    PD  +++ ++  LC   ++ +A   F +L+  G  PD+  Y  +INGL
Sbjct: 949  ELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGL 1008

Query: 133  CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
             R+     AL+LF+EM N          PD  TY+ +   L   G V++A +++ +++ +
Sbjct: 1009 GRSQRVEEALSLFDEMRNRG------ITPDLYTYNALILNLGIAGMVEEAGKMYEELQLK 1062

Query: 193  NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             + P+V TY +LIRG   + + + A  ++ +MM  G +PN  TF  + N+
Sbjct: 1063 GLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQLPNQ 1112


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 175/402 (43%), Gaps = 60/402 (14%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             ++  M+     PP   +F +    L +    +  L+L + +   G  PD   Y  +I+
Sbjct: 159 LALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIH 218

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  G V+    +L  +L      D  TF  +++G+C   R+ EAA L  ++   GC P
Sbjct: 219 ALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMP 278

Query: 121 DVFTYTTLINGLCRTGHT---------IVALN--LFEEMANG---NGEFGVV-------- 158
            V TY  L+ GLCR             +  LN  LF  +  G    G+            
Sbjct: 279 GVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMG 338

Query: 159 ---CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
              C+PDA TYS +  GLCK G +  A  L  +M+ +   P+VVTYT ++  FC    W+
Sbjct: 339 LKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 398

Query: 216 EAKCLFIEM------------------------MD-----------QGVQPNVVTFNVIM 240
           + + L  EM                        MD           QG  P++ ++N I+
Sbjct: 399 DTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 458

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
             LC N +M+EA  + E +++ GV  +   YNT++      GR   A  L   M  +GC 
Sbjct: 459 YHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCS 518

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            DV SY  LI   CK+  ++ +L L  EM  KGI+P  V+YN
Sbjct: 519 LDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 560



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 171/327 (52%), Gaps = 8/327 (2%)

Query: 17  VCSFN-ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V  FN ++ GCLA+ K  +    L++ +   G  PD +TY+IL++  CK+GR+S    +L
Sbjct: 311 VVLFNTVIGGCLAEGKLAEAT-ELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLL 369

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
             + +  F P+ VT+T ++   C      +  AL  ++ A G   +   Y  +I  LC+ 
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKD 429

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
           G    A+ L +EM +        C PD  +Y+TI   LC    +++A+ +F  + +E + 
Sbjct: 430 GRMDEAMGLIQEMRSQG------CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVV 483

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
            + +TY ++I        W +A  L  EM+  G   +VV++N ++  +CK+G +D +  L
Sbjct: 484 ANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVL 543

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
           LE M + G++P+   YN L+   C   RV  A EL   M + G   D+ +Y  LING CK
Sbjct: 544 LEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCK 603

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYN 342
              +  AL+L  ++ ++ + P ++TYN
Sbjct: 604 MGWMHAALNLLEKLHNENVHPDIITYN 630



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 173/364 (47%), Gaps = 46/364 (12%)

Query: 22  ILFGCLAKNKHYDTVLS-------------LFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           +L GC A    +D V+              L  R+ + G  P + TY  L+   C++ + 
Sbjct: 237 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 296

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +LGR+       + V F ++I G  AE ++ EA  L+  +   GC+PD  TY+ L
Sbjct: 297 DEARAMLGRVPEL----NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 352

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVV---------CKP------------------ 161
           ++GLC+ G    A+ L  EM        VV         CK                   
Sbjct: 353 MHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL 412

Query: 162 --DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
             ++  Y+ +   LCK+G +D+A  L  +M+ +  NPD+ +Y ++I   C      EA+ 
Sbjct: 413 TLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEH 472

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +F  ++++GV  N +T+N I++ L ++G+  +A RL + MI  G   D   YN L+   C
Sbjct: 473 MFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMC 532

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G V+R+  L   M   G   +  SY ILI+  CK + +  AL L  +ML++G+ P +V
Sbjct: 533 KDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIV 592

Query: 340 TYNT 343
           TYNT
Sbjct: 593 TYNT 596



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 6/211 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +CS+N +   L  N+  +    +F+ L   G+  +  TYN +I+   + GR      +
Sbjct: 449 PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 508

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++    + D V++  LIK +C +  +  +  L  ++   G KP+  +Y  LI+ LC+
Sbjct: 509 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L ++M N          PD +TY+T+ +GLCK G++  A  L  K+ +EN+
Sbjct: 569 ERRVRDALELSKQMLNQG------LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 622

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +PD++TY  LI   C     ++A  L    M
Sbjct: 623 HPDIITYNILISWHCKVRLLDDAAMLLNRAM 653



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 10/204 (4%)

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVV 199
           AL+L +++      FGV  +P   +Y+ +   L +      A  L+ +M   + + P   
Sbjct: 122 ALHLLDQLPR---RFGV--QPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTF 176

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T+    R  C     NEA  L   M   G  P+ V +  +++ LC  G + EA+ LL  M
Sbjct: 177 TFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEM 236

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           + +G   D + ++ ++ G C  GRV  A  L   M + GCM  V +YG L+ G C+ ++ 
Sbjct: 237 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 296

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
           + A +    ML +     VV +NT
Sbjct: 297 DEARA----MLGRVPELNVVLFNT 316



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 61/125 (48%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           +H     V S+N L   + K+ + D  L L + +   G+ P+  +YNILI+  CK  RV 
Sbjct: 514 LHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVR 573

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +  ++L     PD VT+ +LI GLC    +  A  L  KL      PD+ TY  LI
Sbjct: 574 DALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 633

Query: 130 NGLCR 134
           +  C+
Sbjct: 634 SWHCK 638



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+NIL   L K +     L L K++ + GL PD+ TYN LIN  CKMG +     +
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNL 613

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           L ++      PD +T+  LI   C    + +AA L  +  A  C
Sbjct: 614 LEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVC 657


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 169/334 (50%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +     K K++  V   +K +   G    LY +NIL++ FCK G
Sbjct: 91  LTREHKFWVPFDTCRKVLEHFMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 151 EMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF EM  GNG       P+ +T++T+ DG CK G +D A E +
Sbjct: 211 VLINGLCKESKMNDANELFGEMI-GNG-----LVPNGVTFTTLIDGHCKTGSIDLAMETY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +  +PD++TY +LI G C   D  +A+ L  EM  +G++P+ +T+  +++  CK 
Sbjct: 265 KEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A    + MI+  +R D   Y  L+ G C  G+   A+++   M S G   D  +Y
Sbjct: 325 GDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK  +++    L  EM   G  P VVT
Sbjct: 385 TMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 97/171 (56%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CKEG +  A+ +F ++    + P VV++ +L+ G+    D +E   L   M   GVQP+
Sbjct: 146 FCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPD 205

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V T++V++N LCK  KM++A+ L   MI  G+ P+   + TL+DG C TG ++ A E + 
Sbjct: 206 VYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYK 265

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M   G   D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 266 EMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 108/234 (46%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNG------------EFGVVCKPDAITYSTI 169
           + +Y T+I+ LC       A NL + + +  G            E     + D   +S +
Sbjct: 13  LHSYCTMIHFLCTHQMLPEAKNLIQIVVSRKGKDSASAVFEAILEAKGAQRSDVYVFSGL 72

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GF+  A E F   ++        T   ++  F     +      + E+++ G 
Sbjct: 73  ITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKLVWGFYKEILECGY 132

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M+  CK G+M  A  + + + + G+RP    +NTLM+G+   G ++    
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y +LING CK  ++  A  L+ EM+  G+ P  VT+ T
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTT 246


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 164/348 (47%), Gaps = 41/348 (11%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           K + +DT   +   +   G   +  TYN+LI   C+ G V   F     +      PD  
Sbjct: 234 KVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGF 293

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           T+ +LI GLC   R  EA AL  ++     KP+V  Y  LI+G  R G+   A  + +EM
Sbjct: 294 TYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEM 353

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                      +P+ ITY  +  GLCK G +D+A  L  +M  ++  PD +TY  +I G 
Sbjct: 354 VAAG------VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGH 407

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
              +   +A  L  EM + G+ PNV T++++++ LC++G+ ++AS LLE M   G++P+A
Sbjct: 408 FRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNA 467

Query: 269 SVYNTLMDGFCL-----------------------------------TGRVNRAKELFVS 293
            VY  L+ G+C                                     GRV  + + F  
Sbjct: 468 FVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQ 527

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           M+  G + + F+Y  LI+GY KN ++E A  L   ML  G++P  V Y
Sbjct: 528 MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 575



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 173/364 (47%), Gaps = 41/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  L     +  + D    + K + + G+ P+  TY+ L+   CKMG++    ++
Sbjct: 325 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLL 384

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L +++R    PD +T+  +I+G        +A  L +++   G  P+V+TY+ +I+GLC+
Sbjct: 385 LKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQ 444

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A +L EEM           KP+A  Y+ +  G C+EG V  A E+F KM   N+
Sbjct: 445 SGEPEKASDLLEEMTTKG------LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNV 498

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+  Y SLI G        E+   F +M ++G+ PN  T++ +++   KNG ++ A +
Sbjct: 499 LPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQ 558

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-------------------- 294
           L++ M+  G++P+  +Y  L++ +  +  + +    F SM                    
Sbjct: 559 LVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLS 618

Query: 295 ---------------ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
                          E NG + DV  Y  LI+G CK  + E A  +  EM  KG+ P +V
Sbjct: 619 SSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIV 678

Query: 340 TYNT 343
            YN 
Sbjct: 679 CYNA 682



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 164/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N++     ++        L   + + G+ P++YTY+I+I+  C+ G       +
Sbjct: 395 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 454

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+A  +  LI G C E  +  A  +F K+      PD++ Y +LI GL +
Sbjct: 455 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 514

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    +   F +M     E G++  P+  TYS +  G  K G ++ A++L  +M D  +
Sbjct: 515 VGRVEESTKYFAQMQ----ERGLL--PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGL 568

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V Y  L+  +  ++D  +    F  M+DQGV  +   + ++++ L  +G M+ A R
Sbjct: 569 KPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFR 628

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L  + + G  PD  VY++L+ G C T    +A  +   M   G   ++  Y  LI+G C
Sbjct: 629 VLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLC 688

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+ +I  A ++++ +L+KG+ P  VTY +
Sbjct: 689 KSGDISYARNVFNSILAKGLVPNCVTYTS 717



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 134/250 (53%), Gaps = 6/250 (2%)

Query: 92  SLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151
           S ++  C       A  +  ++R  GC  +  TY  LI GLCR+G    A    ++M   
Sbjct: 227 SALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME-- 284

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
             ++G+V  PD  TY  + +GLCK    ++AK L  +M    + P+VV Y +LI GF   
Sbjct: 285 --DYGLV--PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMRE 340

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
            + +EA  +  EM+  GVQPN +T++ ++  LCK G+MD AS LL+ M++   RPD   Y
Sbjct: 341 GNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITY 400

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N +++G         A  L   ME+ G   +V++Y I+I+G C++ E E A  L  EM +
Sbjct: 401 NLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTT 460

Query: 332 KGIRPTVVTY 341
           KG++P    Y
Sbjct: 461 KGLKPNAFVY 470



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 6/285 (2%)

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
           +  +CK+        VL  +       + VT+  LI GLC    + EA      +  +G 
Sbjct: 229 LEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGL 288

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178
            PD FTY  LINGLC++  +  A  L +EM+          KP+ + Y+ + DG  +EG 
Sbjct: 289 VPDGFTYGALINGLCKSRRSNEAKALLDEMSCAE------LKPNVVVYANLIDGFMREGN 342

Query: 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238
            D+A ++  +M    + P+ +TY +L+RG C     + A  L  +M+    +P+ +T+N+
Sbjct: 343 ADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL 402

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           I+    ++    +A RLL  M   G+ P+   Y+ ++ G C +G   +A +L   M + G
Sbjct: 403 IIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG 462

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              + F Y  LI+GYC+   +  A  ++ +M    + P +  YN+
Sbjct: 463 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNS 507



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 42/363 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++I+   L ++   +    L + + + GL P+ + Y  LI+ +C+ G VS    +
Sbjct: 430 PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEI 489

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++ +    PD   + SLI GL    R+ E+   F +++  G  P+ FTY+ LI+G  +
Sbjct: 490 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 549

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L + M +         KP+ + Y  + +   K   ++K    F  M D+ +
Sbjct: 550 NGDLESAEQLVQRMLDTG------LKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGV 603

Query: 195 N-----------------------------------PDVVTYTSLIRGFCYANDWNEAKC 219
                                               PDV  Y+SLI G C   D  +A  
Sbjct: 604 MLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFG 663

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +  EM  +GV PN+V +N +++ LCK+G +  A  +   ++  G+ P+   Y +L+DG C
Sbjct: 664 ILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSC 723

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++ A  L+  M + G   D F Y +L  G     ++E A+ L  EM  +G   ++ 
Sbjct: 724 KVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASIS 782

Query: 340 TYN 342
           ++N
Sbjct: 783 SFN 785



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 175/365 (47%), Gaps = 43/365 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           IFD M +++  P   C  +++FG L+K    +     F ++   GL P+ +TY+ LI+ +
Sbjct: 489 IFDKMTKVNVLPDLYCYNSLIFG-LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 547

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAV--------------------TFTSLI-KGLCAES 101
            K G +     ++ R+L +   P+ V                    TF S++ +G+  ++
Sbjct: 548 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 607

Query: 102 RI-------------MEAA-ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           RI             MEAA  + + +   G  PDV  Y++LI+GLC+T     A  + +E
Sbjct: 608 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 667

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M+    +  +VC      Y+ + DGLCK G +  A+ +F  +  + + P+ VTYTSLI G
Sbjct: 668 MSKKGVDPNIVC------YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDG 721

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C   D + A  L+ EM+  G+ P+   ++V+       G +++A  L+E M   G    
Sbjct: 722 SCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HAS 780

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
            S +N L+DGFC  G++    +L   +   G + +  +   +I+G  +  ++    +++ 
Sbjct: 781 ISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFV 840

Query: 328 EMLSK 332
           E+  K
Sbjct: 841 ELQQK 845



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 135/309 (43%), Gaps = 29/309 (9%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P V  ++ L   L K    +    +   ++  G+ P++  YN LI+  CK G +S   
Sbjct: 638 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 697

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            V   IL     P+ VT+TSLI G C    I  A  L+ ++ A G  PD F Y+ L  G 
Sbjct: 698 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 757

Query: 133 CRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
              G    A+ L EEM   G+            +++ + DG CK G + +  +L   +  
Sbjct: 758 SSAGDLEQAMFLIEEMFLRGHASIS--------SFNNLVDGFCKRGKMQETLKLLHVIMG 809

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIE-------------------MMDQGVQPN 232
             + P+ +T  ++I G   A   +E   +F+E                   M++QG  P 
Sbjct: 810 RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPL 869

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
            V  ++I +  CK G +D+A  L ++++        S Y  ++D  C  G+++ A  L  
Sbjct: 870 DVVDDMIRDH-CKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLK 928

Query: 293 SMESNGCMR 301
            M+  G ++
Sbjct: 929 EMDKRGNLQ 937



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 127/290 (43%), Gaps = 34/290 (11%)

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLCRTGHTI 139
           S   PDA  F  L   LCA S    A  L  K+ RA+   P V    ++   L  +GH  
Sbjct: 118 SAPAPDA--FAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLA--SIHRALSDSGHPF 173

Query: 140 VA-----LNLFEEMANGNGEFGVVCKPD---------------AIT-------YSTITDG 172
                      +E+  G G  G   +PD               A+        + +  + 
Sbjct: 174 AGGARRPRGYLQEVWEGAGRRG--GRPDDERSGHGSQHSVLQRAVEGSAARGRHGSALEA 231

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CK    D AK++ ++M++     + VTY  LI G C +    EA     +M D G+ P+
Sbjct: 232 YCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPD 291

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
             T+  ++N LCK+ + +EA  LL+ M    ++P+  VY  L+DGF   G  + A ++  
Sbjct: 292 GFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 351

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            M + G   +  +Y  L+ G CK  +++ A  L  +M+    RP  +TYN
Sbjct: 352 EMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYN 401


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 174/337 (51%), Gaps = 7/337 (2%)

Query: 5   DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           D ML +H   P V S + +   L K  H D    L   L  +G+ P+L+  N LI+  CK
Sbjct: 289 DDMLSLH-FVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCK 347

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
             R      +   +      P+ VT+  LI  LC    + +A  +F ++R  G +  V+ 
Sbjct: 348 DRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYP 407

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           Y +LING C+  +   A  L  EM     E G+   P A +YS +  GLC++G +  A E
Sbjct: 408 YNSLINGYCQHDNFHQARGLLNEMV----EKGLA--PSAASYSPLIAGLCRKGDLASAME 461

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L  +M    ++ +V T+T+LI GFC   + +EA  LF +M+D  V PN VTFNV++   C
Sbjct: 462 LHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYC 521

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           + G + +A +L + M+  G+ PD   Y +L+   CLT    +AKE    +E+N  + + F
Sbjct: 522 RVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSF 581

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           S   L+ G+CK   +     ++ EM ++G++  ++++
Sbjct: 582 SLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISF 618



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 159/324 (49%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N+L   L +N      + +   +   G+  D  TY  L+  FC+   +     +   +L
Sbjct: 233 YNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDML 292

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
              F P   + + ++ GL     I +A  L   L   G  P++F    LI+ LC+     
Sbjct: 293 SLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFR 352

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  LF  MAN   E      P+ +TY+ +   LCK G +D A  +F +M+++ I   V 
Sbjct: 353 EAERLFRGMANRGLE------PNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVY 406

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            Y SLI G+C  +++++A+ L  EM+++G+ P+  +++ ++  LC+ G +  A  L   M
Sbjct: 407 PYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREM 466

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + GV  +   + TL+ GFC  G ++ A  LF  M  +  + +  ++ ++I GYC+   +
Sbjct: 467 ARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNV 526

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A  LY +M+ +G+ P   TY +
Sbjct: 527 RKAFQLYDQMVDRGLTPDNYTYRS 550



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 163/353 (46%), Gaps = 34/353 (9%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
            ILF  L K + +     LF  +       D Y Y   I  +C++  +     +L R+  
Sbjct: 165 QILFA-LIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRMES 223

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
                 AV +  L+ GLC  +R++EA  +   +   G   D  TY TL+ G CRT    +
Sbjct: 224 KGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEM 283

Query: 141 ALNLFEEMANGN-------------------------------GEFGVVCKPDAITYSTI 169
           AL + ++M + +                               GE G+V  P+    + +
Sbjct: 284 ALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMV--PNLFACNAL 341

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            D LCK+    +A+ LF  M +  + P+ VTY  LI   C     ++A C+F  M ++G+
Sbjct: 342 IDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGI 401

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +  V  +N ++N  C++    +A  LL  M++ G+ P A+ Y+ L+ G C  G +  A E
Sbjct: 402 RVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAME 461

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           L   M  NG   +V+++  LI+G+CK+  ++ A  L+ +M+   + P  VT+N
Sbjct: 462 LHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFN 514



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 168/340 (49%), Gaps = 8/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+     P  V +FN++     +  +      L+ ++   GL PD YTY  LI+  
Sbjct: 497 LFDKMIDSSVVPNEV-TFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVL 555

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C           +  +  +C   ++ + T+L+ G C E R+ E   ++ ++RA G K D+
Sbjct: 556 CLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDL 615

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            ++T ++    +         LF EM     E GV  KPD + ++ + D   KE  + +A
Sbjct: 616 ISFTVIVYAALKLHDGEKISVLFREMK----EKGV--KPDNVFHTCMIDVHSKEENIVQA 669

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
              + KM  +  +P+VVTYT LI   C +   + A+ L  EM+     PN  T+N  ++ 
Sbjct: 670 LNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDF 729

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L   G++++A ++L   I  G   +   +NTL+ GFC  G++  A +L  +   +G   D
Sbjct: 730 LANEGELEKA-KVLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPD 788

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             SY  +IN  CK  +I  A  L++EML KG++P +V YN
Sbjct: 789 CISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYN 828



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 166/363 (45%), Gaps = 41/363 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ IL   L K    D  L +F R+   G+   +Y YN LIN +C+         +
Sbjct: 368 PNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGL 427

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P A +++ LI GLC +  +  A  L  ++   G   +V+T+TTLI+G C+
Sbjct: 428 LNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCK 487

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  LF++M + +    VV  P+ +T++ + +G C+ G V KA +L+ +M D  +
Sbjct: 488 DGNMDEAARLFDKMIDSS----VV--PNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGL 541

Query: 195 NPDVVTYTSLIR-----------------------------------GFCYANDWNEAKC 219
            PD  TY SLI                                    GFC      E   
Sbjct: 542 TPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYH 601

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           ++ EM  +GV+ ++++F VI+    K    ++ S L   M + GV+PD   +  ++D   
Sbjct: 602 IWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHS 661

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
               + +A   +  M ++GC  +V +Y +LIN  CK+  +  A  L  EML     P   
Sbjct: 662 KEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSF 721

Query: 340 TYN 342
           TYN
Sbjct: 722 TYN 724



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 160/328 (48%), Gaps = 9/328 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +F  L     K+ + D    LF ++    + P+  T+N++I  +C++G V   F +  
Sbjct: 475 VYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYD 534

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           +++    TPD  T+ SLI  LC     M+A      L       + F+ TTL+ G C+ G
Sbjct: 535 QMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEG 594

Query: 137 HTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                 ++++EM A G        K D I+++ I     K    +K   LF +MK++ + 
Sbjct: 595 RLTETYHIWDEMRARG-------VKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVK 647

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           PD V +T +I       +  +A   + +M+  G  PNVVT+ V++N LCK+G +  A  L
Sbjct: 648 PDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQIL 707

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            E M+     P++  YN  +D     G + +AK L  ++   GC+ +  ++  LI G+CK
Sbjct: 708 CEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATI-LEGCLANTVTFNTLIKGFCK 766

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +I+GA+ L       G  P  ++Y+T
Sbjct: 767 AGQIQGAIDLMQNNTESGFFPDCISYST 794



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 128/282 (45%), Gaps = 6/282 (2%)

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           + ++ R      VL   L S       T + ++  L    +   A  LF ++       D
Sbjct: 135 YLRLRRARDAADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLD 194

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            + YT  I   C   +   A  L   M +     GV  K  A+ Y+ +  GLC+   V +
Sbjct: 195 EYVYTAGIRAYCEIRNLDGARGLLTRMESK----GV--KGSAVPYNVLMYGLCRNNRVLE 248

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A E+   M +  I  D VTY +L+ GFC   +   A  +  +M+     P+V + + +++
Sbjct: 249 AVEVKNSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVD 308

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            L K G +D+A RL   + ++G+ P+    N L+D  C   R   A+ LF  M + G   
Sbjct: 309 GLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEP 368

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  +Y ILI+  CK   ++ AL ++  M  KGIR TV  YN+
Sbjct: 369 NEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNS 410



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 28/260 (10%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           ++  + + G+  DL ++ +++    K+       V+   +      PD V  T +I    
Sbjct: 602 IWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHS 661

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG------- 151
            E  I++A   + K+ A GC P+V TYT LIN LC++G+   A  L EEM  G       
Sbjct: 662 KEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSF 721

Query: 152 -----------NGEFGVV----------CKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
                       GE              C  + +T++T+  G CK G +  A +L     
Sbjct: 722 TYNCFLDFLANEGELEKAKVLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNT 781

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           +    PD ++Y+++I   C   D N+A  L+ EM+ +G++P++V +N+++     +G+ D
Sbjct: 782 ESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRWCNIHGEFD 841

Query: 251 EASRLLELMIQIGVRPDASV 270
           +   +   M+ +    D  V
Sbjct: 842 KGLGIYSDMVNLKYADDTPV 861



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSI-------------GLFPDLYTYNILINCFC 63
           V    IL GCLA    ++T++  F +   I             G FPD  +Y+ +IN  C
Sbjct: 741 VLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELC 800

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
           K+G ++  F +   +L     PD V +  LI+
Sbjct: 801 KVGDINKAFQLWNEMLYKGLKPDIVAYNILIR 832


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 167/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L + ++A G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  +++ PD++TY +LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+   C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P VVT
Sbjct: 405 KEMQRDGYLPNVVT 418



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 159/292 (54%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A ALF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++ +M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYRQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G + +V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNVVT 418



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 129/253 (50%), Gaps = 8/253 (3%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM- 148
           F  L+   C    I  A ++F  +  +G +P V ++ TL+NG  + G       L   M 
Sbjct: 139 FNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           A+G        +PD  TYS + +GLCKE  +D A  LF +M D  + P+ VT+T+LI G 
Sbjct: 199 ASG-------VQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGH 251

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +A  L++ M   G++PD 
Sbjct: 252 CKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y TL+DG C  G +  A E    M       D  +Y  LI+  C+      A  +  E
Sbjct: 312 ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLRE 371

Query: 329 MLSKGIRPTVVTY 341
           MLS G++P + TY
Sbjct: 372 MLSVGLKPEIGTY 384



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G    ++ +  L++  C+ G   +A ++F+ +     ++G+  +P  ++++T+ +G  K 
Sbjct: 131 GYPASLYFFNILMHNFCKGGEIXLAQSVFDSIT----KWGL--RPSVVSFNTLMNGYIKI 184

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +D+   L   M+   + PDV TY+ LI G C  +  ++A  LF EM+D G+ PN VTF
Sbjct: 185 GDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTF 244

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++  CKNG++D A  +   M+   + PD   YNTL+ G C  G + +A++L   M  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            G   D  +Y  LI+G CK  ++E A      M+ + IR   V Y
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +    CK G +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   +I        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+  CK G++  A  + + + + G+RP    +NTLM+G+ 
Sbjct: 123 FYEESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L   M+++G   DV++Y +LING CK  +++ A +L+ EML  G+ P  V
Sbjct: 183 KIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 172/343 (50%), Gaps = 11/343 (3%)

Query: 3   IFDYMLRMHPSPPP-VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           + D     HP+  P   S+  +   L  ++     ++L + + + G+  D+ TY  LI  
Sbjct: 108 LVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRG 167

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C    +     +L  +  S   P+ V ++ L++G C   R  +   +F  +   G KPD
Sbjct: 168 LCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPD 227

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V  +T LI+ LC+ G T  A  + + M     E      P+ +TY+ + + LCKEG V +
Sbjct: 228 VIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLE------PNVVTYNVLINSLCKEGSVRE 281

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG---VQPNVVTFNV 238
           A  L  +M D+ + PDVVTY +LI G     + +EA   F+E M QG   V+P+VVTFN 
Sbjct: 282 ALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMS-FLEEMIQGDTVVEPDVVTFNS 340

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           +++ LCK G+M +A ++ E+M + G   +   YN L+ GF    +V  A  L   +  +G
Sbjct: 341 VIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISG 400

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              D F+Y ILING+ K  E++ A      M  +GI+  +  Y
Sbjct: 401 LEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHY 443



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 166/328 (50%), Gaps = 5/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ L     ++  +  V  +F+ ++  G+ PD+  +  LI+  CK G+      V
Sbjct: 191 PNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKV 250

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    P+ VT+  LI  LC E  + EA  L  ++   G  PDV TY TLI GL  
Sbjct: 251 KDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSG 310

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A++  EEM  G+     V +PD +T++++  GLCK G + +A ++   M +   
Sbjct: 311 VLEMDEAMSFLEEMIQGD----TVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGC 366

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++VTY  LI GF   +    A  L  E+   G++P+  T+++++N   K  ++D A +
Sbjct: 367 MCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEK 426

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  M Q G++ +   Y  L+   C  G + RA  LF  M+ N C  D  +Y  +I+G C
Sbjct: 427 FLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKN-CGLDAIAYSTMIHGAC 485

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K+ +++    L  +ML +G+ P  VTY+
Sbjct: 486 KSGDMKTVKQLIQDMLDEGLAPDAVTYS 513



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 143/266 (53%), Gaps = 15/266 (5%)

Query: 86  DAVTFTSLIKGLCAE--SRIMEAAALFTKLRAFG---CKPDVFTYTTLINGLCRTGHTIV 140
           DAV++ +++  LC      + +A +L   +        +P+  +YTT++ GLC +  T  
Sbjct: 82  DAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE 141

Query: 141 ALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
           A+ L   M A+G        + D +TY T+  GLC    +D A EL  +M    + P+VV
Sbjct: 142 AVALLRSMQASG-------VRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVV 194

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            Y+ L+RG+C +  W +   +F +M  +G++P+V+ F  ++++LCK GK  +A+++ ++M
Sbjct: 195 VYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMM 254

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           +Q G+ P+   YN L++  C  G V  A  L   M+  G   DV +Y  LI G     E+
Sbjct: 255 VQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEM 314

Query: 320 EGALSLYSEMLSKG--IRPTVVTYNT 343
           + A+S   EM+     + P VVT+N+
Sbjct: 315 DEAMSFLEEMIQGDTVVEPDVVTFNS 340



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 156/322 (48%), Gaps = 9/322 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L K       L+L K ++  G+ PD+ TYN LI     +  +      
Sbjct: 261 PNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSF 320

Query: 75  LGRILR--SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           L  +++  +   PD VTF S+I GLC   R+ +A  +   +   GC  ++ TY  LI G 
Sbjct: 321 LEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGF 380

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            R     +A+NL +E+A    E      PD+ TYS + +G  K   VD+A++    M+  
Sbjct: 381 LRVHKVKMAMNLMDELAISGLE------PDSFTYSILINGFSKMWEVDRAEKFLCTMRQR 434

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            I  ++  Y  L+   C       A  LF EM D+    + + ++ +++  CK+G M   
Sbjct: 435 GIKAELFHYIPLLAAMCQQGMMERAMGLFNEM-DKNCGLDAIAYSTMIHGACKSGDMKTV 493

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +L++ M+  G+ PDA  Y+ L++ +   G +  A+ +   M ++G + DV  +  LI G
Sbjct: 494 KQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKG 553

Query: 313 YCKNKEIEGALSLYSEMLSKGI 334
           Y    + +  L L  EM +K +
Sbjct: 554 YSAEGQTDKVLKLIHEMRAKNV 575



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 119/261 (45%), Gaps = 7/261 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN +   L K       + + + +   G   +L TYN LI  F ++ +V     +
Sbjct: 333 PDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNL 392

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +  S   PD+ T++ LI G      +  A      +R  G K ++F Y  L+  +C+
Sbjct: 393 MDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQ 452

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ LF EM          C  DAI YST+  G CK G +   K+L   M DE +
Sbjct: 453 QGMMERAMGLFNEMDKN-------CGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGL 505

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD VTY+ LI  +    D  EA+ +  +M   G  P+V  F+ ++      G+ D+  +
Sbjct: 506 APDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLK 565

Query: 255 LLELMIQIGVRPDASVYNTLM 275
           L+  M    V  D  + +T++
Sbjct: 566 LIHEMRAKNVAFDPKIISTII 586



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 42/225 (18%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++N L G   +       ++L   L   GL PD +TY+ILIN F KM  V      L 
Sbjct: 370 LVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLC 429

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + +     +   +  L+  +C +  +  A  LF ++    C  D   Y+T+I+G C++G
Sbjct: 430 TMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDK-NCGLDAIAYSTMIHGACKSG 488

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYS----------------------------- 167
                  L ++M +          PDA+TYS                             
Sbjct: 489 DMKTVKQLIQDMLDEG------LAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVP 542

Query: 168 ------TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
                 ++  G   EG  DK  +L  +M+ +N+  D    +++IR
Sbjct: 543 DVAVFDSLIKGYSAEGQTDKVLKLIHEMRAKNVAFDPKIISTIIR 587


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 165/329 (50%), Gaps = 5/329 (1%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P V S+N L     K + +     LF  L +  + P + TYN LI+  C+ G +    
Sbjct: 406 AAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQ 465

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   +      PD +T+T+L+KG      +  A  ++ ++   G KPD + YTT   G 
Sbjct: 466 RLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGE 525

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            R G +  A  L EEM   +        PD   Y+   DGLCK G ++KA E   K+   
Sbjct: 526 LRLGDSEKAFRLHEEMVAEDHH-----APDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRV 580

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            + PD VTYT++IRG+     +  A+ L+ EM+ + + P+V+T+ V+++   K G++++A
Sbjct: 581 GLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQA 640

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +    M + GVRP+   +N L+ G C  G ++ A      ME  G   + +SY ILI+ 
Sbjct: 641 FQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISK 700

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +C   + E  + LY EML K I P   T+
Sbjct: 701 HCDLDKWEEVVKLYKEMLDKEIEPDGYTH 729



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 169/337 (50%), Gaps = 13/337 (3%)

Query: 10  MHPSPPPVC--SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           M  S  PV   SFN L     K   +D    +   + + G++P   TYNI I   C+ GR
Sbjct: 335 MQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGR 394

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +         +L S   PD V++ +L+ G     + +EA+ LF  L+A    P + TY T
Sbjct: 395 IDDA----RELLSSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNT 450

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+GLC +G+   A  L EEM +       +  PD ITY+T+  G  K G +  A E++ 
Sbjct: 451 LIDGLCESGNLEGAQRLKEEMTSQ------LIYPDVITYTTLLKGFVKNGNLSMATEIYD 504

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ-PNVVTFNVIMNELCKN 246
           +M  + I PD   YT+   G     D  +A  L  EM+ +    P++  +NV ++ LCK 
Sbjct: 505 EMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKV 564

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +++A      + ++G+ PD   Y T++ G+   GR   A++L+  M S      V +Y
Sbjct: 565 GNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITY 624

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +LI+G+ K   +E A    +EM  +G+RP V+T+N 
Sbjct: 625 FVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNA 661



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 150/335 (44%), Gaps = 11/335 (3%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           MH   P V +FN +     K    + V  ++  +    +     TYNILIN F K G++ 
Sbjct: 267 MHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKME 326

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
                 G + RS F     +F  LI+G C +    EA  +  ++   G  P   TY   I
Sbjct: 327 EARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYI 386

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
             LC  G    A  L   MA           PD ++Y+T+  G  K     +A  LF  +
Sbjct: 387 RALCEFGRIDDARELLSSMA----------APDVVSYNTLMHGYIKMRKFVEASLLFDDL 436

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           K  NINP +VTY +LI G C + +   A+ L  EM  Q + P+V+T+  ++    KNG +
Sbjct: 437 KAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNL 496

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGI 308
             A+ + + M++ G++PD   Y T   G    G   +A  L   M   +    D+  Y +
Sbjct: 497 SMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNV 556

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            I+G CK   +E A+    ++   G+ P  VTY T
Sbjct: 557 RIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTT 591



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 135/304 (44%), Gaps = 10/304 (3%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           F+++   G  P +   NI++        ++    V   ++     P  +TF +++     
Sbjct: 227 FEKMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFK 286

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
              +     ++ +++    +    TY  LING  ++G    A     +M       G   
Sbjct: 287 AGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRS----GFPV 342

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            P   +++ + +G CK+G  D+A  +  +M +  I P   TY   IR  C     ++A+ 
Sbjct: 343 TP--YSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDAR- 399

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
              E++     P+VV++N +M+   K  K  EAS L + +    + P    YNTL+DG C
Sbjct: 400 ---ELLSSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLC 456

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            +G +  A+ L   M S     DV +Y  L+ G+ KN  +  A  +Y EML KGI+P   
Sbjct: 457 ESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGY 516

Query: 340 TYNT 343
            Y T
Sbjct: 517 AYTT 520



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 104/246 (42%), Gaps = 41/246 (16%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + + M+      P +  +N+    L K  + +  +   +++  +GL PD  TY  +I 
Sbjct: 535 FRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIR 594

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            + + GR      +   +L    +P  +T+  LI G     R+ +A    T+++  G +P
Sbjct: 595 GYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRP 654

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V T+  L++G+C+ G+                                         +D
Sbjct: 655 NVMTHNALLHGMCKAGN-----------------------------------------ID 673

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A     KM++E I+P+  +YT LI   C  + W E   L+ EM+D+ ++P+  T   + 
Sbjct: 674 EAYRYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYTHRALF 733

Query: 241 NELCKN 246
             L K+
Sbjct: 734 KHLEKD 739



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%)

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           K+   +K    F KM  +   P V     ++R    +   N+A+ ++  M+  G+ P V+
Sbjct: 216 KKSMAEKCLLSFEKMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVI 275

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           TFN +++   K G ++   ++   M +  +      YN L++GF  +G++  A+     M
Sbjct: 276 TFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDM 335

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +G     +S+  LI GYCK    + A  +  EML+ GI PT  TYN
Sbjct: 336 QRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYN 383


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 167/314 (53%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L   ++  G +PDV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM +     G+V  P+ +T++T+ DG CK G VD A E++ +M  ++++PD++TY +LI 
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +A+ L  EM+ +G+ P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M + G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P+VVT
Sbjct: 405 KEMQRDGYMPSVVT 418



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M + +        PD ITY+T+  GLCK+G + +A++L  +M  + 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ + V +  +++ LC+ G+  +A 
Sbjct: 307 LXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+ +G M  V +
Sbjct: 367 KMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G    ++ +  L++   + G   +A ++F+ +   +       +P  ++++T+ +G  K 
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWS------LRPSVVSFNTLMNGYIKL 184

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +D+   L   M+   + PDV TY+ LI G C  +  ++A  LF EM+D+G+ PN VTF
Sbjct: 185 GDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTF 244

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
             +++  CKNG++D A  + + M+   + PD   YNTL+ G C  G + +A++L   M  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIM 304

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G   D  +Y  LI+G CK  ++E A      M+ + IR   V Y 
Sbjct: 305 KGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYT 350



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 101/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +     KEG +  A+ +F  +   ++ P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 VSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S     D+ +Y  LI G CK  +++ A  L  EM+ KG+ P  +TY T
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTT 316



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 12/232 (5%)

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITYSTITD 171
           +Y T+I+ LC       A  L + + +  G+      F  +       + D   +S +  
Sbjct: 15  SYCTMIHFLCTQQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 74

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
              + GF+  A E +   K+        T   ++        +      + E ++ G   
Sbjct: 75  AYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPA 134

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           ++  FN++M+   K G++  A  + + + +  +RP    +NTLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLK 194

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +M+ +G   DV++Y +LING CK  +++ A  L+ EML KG+ P  VT+ T
Sbjct: 195 NAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTT 246


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 177/356 (49%), Gaps = 23/356 (6%)

Query: 3   IFDYMLRMHPSPPPVCS--FNILFGCLAKNKH--YDTVLSLFKR-------------LNS 45
           + D M+R +P+PP V S     L G     +    D ++  +K+             +  
Sbjct: 142 LLDQMIRAYPTPPLVLSSVHRALSGSDQGRRPVVLDVLVDTYKKTGRVRDGAEVVLLMKD 201

Query: 46  IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME 105
           +GL P L   N L+    +   +   + V G +  +  +PD  T+++LI+  C    +  
Sbjct: 202 LGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLES 261

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165
           A  +  ++R  GC  +V TY TLI GLCR G    A    +EM     ++G+V  PD  T
Sbjct: 262 AKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEME----DYGLV--PDGFT 315

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y  I +GLCK G  D+AK L  +M    + P+VV Y++LI GF    + +EA  +  EM 
Sbjct: 316 YGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMS 375

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQPN +T++ ++  LCK G+M  ASR+L+ M +IG   D   YN +++G        
Sbjct: 376 AAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKE 435

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            A  L   M   G   +V++Y I+ING C+  E E A  L  +M++ G++P    Y
Sbjct: 436 EAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVY 491



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 175/365 (47%), Gaps = 43/365 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  ++ L     +  + D    + K +++ G+ P+  TY+ LI   CK+GR+     +
Sbjct: 346 PNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRI 405

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ +  +  D +T+  +I+G   +    EA  L  ++R  G  P+V+TY+ +INGLC+
Sbjct: 406 LKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQ 465

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G +  A  L E+M A+G        KP+A  Y+ +  G C+EG    A E   KM  EN
Sbjct: 466 IGESERASGLLEQMIADG-------LKPNAFVYAPLISGYCREGSFSLACETLKKMTREN 518

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD+  Y SLI G       +EA   + EM+++G QPN  T+  +++     G +++A 
Sbjct: 519 LTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAE 578

Query: 254 RLLELMIQIGVRPDASVYNTLMDGF----------------------------------- 278
           +LL  M+  G+ P+  +Y  +++G+                                   
Sbjct: 579 QLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNL 638

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
             +G +  A  +   +E NG + D   YG LI+G+CK  ++E A+ L  EM  KGI P +
Sbjct: 639 SSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGI 698

Query: 339 VTYNT 343
             YN 
Sbjct: 699 SCYNA 703



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 160/327 (48%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L     K +  ++   + + +   G   ++ TYN LI   C+ G +   F  
Sbjct: 241 PDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGY 300

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      PD  T+ ++I GLC   R  +A  L  ++   G  P+V  Y+TLI+G  R
Sbjct: 301 KKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMR 360

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   A  + +EM+          +P+ ITY  +  GLCK G + +A  +  +M     
Sbjct: 361 QGNADEAFKIVKEMSAAG------VQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGY 414

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY  +I G    ++  EA  L  EM   G+ PNV T+++I+N LC+ G+ + AS 
Sbjct: 415 MADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASG 474

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE MI  G++P+A VY  L+ G+C  G  + A E    M       D++ Y  LI G  
Sbjct: 475 LLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLS 534

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
              +++ A+  Y EML KG +P   TY
Sbjct: 535 NVGKMDEAIEYYDEMLEKGFQPNDFTY 561



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 168/359 (46%), Gaps = 41/359 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++N++     +  + +    L   +   G+ P++YTY+I+IN  C++G       +L ++
Sbjct: 420 TYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQM 479

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P+A  +  LI G C E     A     K+      PD++ Y +LI GL   G  
Sbjct: 480 IADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKM 539

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A+  ++EM     E G   +P+  TY  +  G    G ++KA++L  +M +  +NP+ 
Sbjct: 540 DEAIEYYDEML----EKGF--QPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPND 593

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL--------------- 243
             Y  ++ G+  +++  +       M+++G+ P+   + ++++ L               
Sbjct: 594 FIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSV 653

Query: 244 --------------------CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
                               CK   M++A  LL+ M + G+ P  S YN L+DGFC +  
Sbjct: 654 IEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDD 713

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++ A+ +F S+   G   +  +Y  LI+GYCK  +I  A+ LY+EML++G+ P    Y+
Sbjct: 714 ISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYS 772



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 165/360 (45%), Gaps = 34/360 (9%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++I+   L +    +    L +++ + GL P+ + Y  LI+ +C+ G  S     
Sbjct: 451 PNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACET 510

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ R   TPD   + SLI GL    ++ EA   + ++   G +P+ FTY  LI+G   
Sbjct: 511 LKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSM 570

Query: 135 TGHTIVALNLFEEMANG-------------NGEF------------------GVVCKPDA 163
            G+   A  L  +M N               G F                  G++  PD 
Sbjct: 571 AGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLM--PDN 628

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
             Y  +   L   G +  A  +   ++   + PD + Y SLI GFC A D  +A  L  E
Sbjct: 629 RLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDE 688

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M  +G++P +  +N +++  CK+  +  A  +   +I  G+ P+   Y TL+DG+C  G 
Sbjct: 689 MAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGD 748

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  A +L+  M + G   D F Y +L  G   + +++ AL +  EM+++G    + ++NT
Sbjct: 749 IRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGY-AIISSFNT 807



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 155/327 (47%), Gaps = 32/327 (9%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           K+ + + V S  K +   GL PD   Y I+I+     G +     VL  I ++   PD++
Sbjct: 605 KSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSL 664

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
            + SLI G C  + + +A  L  ++   G +P +  Y  LI+G C++     A N+F   
Sbjct: 665 IYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNS- 723

Query: 149 ANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
                   ++CK   P+ +TY+T+ DG CK G +  A +L+ +M  E + PD   Y+ L 
Sbjct: 724 --------IICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLA 775

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
            G   + D  +A  +  EM+ +G    + +FN +++  CK GK+ E  + L +M+   + 
Sbjct: 776 AGCSNSGDLQQALFITEEMIARGYAI-ISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIV 834

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMES-NGCMR----------DVFSYGI------ 308
           P       ++ G    G+++ A  +FV ++  N   R          D+ + G+      
Sbjct: 835 PSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLVPLDVI 894

Query: 309 --LINGYCKNKEIEGALSLYSEMLSKG 333
             +I  +CK   ++ AL L+  +++KG
Sbjct: 895 HNMIQSHCKQGYLDKALMLHDALVAKG 921



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 30/270 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +  L     K    +  + L   +   G+ P +  YN LI+ FCK   +S    +
Sbjct: 661 PDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNI 720

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I+     P+ VT+T+LI G C    I +A  L+ ++   G  PD F Y+ L  G   
Sbjct: 721 FNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSN 780

Query: 135 TGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           +G    AL + EEM A G   + ++      +++T+  G CK G + +  +    M D++
Sbjct: 781 SGDLQQALFITEEMIARG---YAIIS-----SFNTLVHGFCKRGKLQETVKFLHVMMDKD 832

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIE--------------------MMDQGVQPNV 233
           I P ++T  +++ G   A   +EA  +F+E                    M++QG+ P  
Sbjct: 833 IVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLVPLD 892

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           V  N+I +  CK G +D+A  L + ++  G
Sbjct: 893 VIHNMIQSH-CKQGYLDKALMLHDALVAKG 921



 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 14/182 (7%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   ++  L     K       + L+  + + G+ PD + Y++L       G +     
Sbjct: 730 PPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALF 789

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   ++   +   + +F +L+ G C   ++ E       +      P + T   ++ GL 
Sbjct: 790 ITEEMIARGYAIIS-SFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLG 848

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL-------------CKEGFVD 180
             G    A  +F E+   N          ++    I  GL             CK+G++D
Sbjct: 849 EAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLVPLDVIHNMIQSHCKQGYLD 908

Query: 181 KA 182
           KA
Sbjct: 909 KA 910


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 169/325 (52%), Gaps = 8/325 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI- 78
           +N L     +    + V  LF  +   G+ PD+ TY+ +IN   +MG V     VL ++ 
Sbjct: 246 YNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMF 305

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           LR C +P+  TFTSL+KG     R+ EA  L+ ++   G +P+   Y TLI+GLC  G  
Sbjct: 306 LRGC-SPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKM 364

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
           + A+++ ++M   NG F     P+  TYST+ DG  K G +  A E++ KM      P+V
Sbjct: 365 VEAVSVSQKMER-NGVF-----PNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNV 418

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V YT ++   C  + +N A  L   M +    PN +TFN  +  LC +GK + A ++L  
Sbjct: 419 VVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQ 478

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M Q G  P+ + YN ++DG     R   A ++   +E      ++ +Y  +++G+C    
Sbjct: 479 MRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGM 538

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
            +GAL +  ++L  G +P  +TYNT
Sbjct: 539 FKGALQIAGKLLVGGTKPDSITYNT 563



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 168/329 (51%), Gaps = 11/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N +   L     +  +  ++  +   G+  ++YTYN+L+   CK  RV     +
Sbjct: 141 PSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKL 200

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PDAV++T+++  +C   ++ EA  L  ++++F     V  Y  LING CR
Sbjct: 201 LAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSF-----VPVYNALINGFCR 255

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                    LF EMA           PD ITYST+ + L + G V+ A  +  KM     
Sbjct: 256 EHKMEEVFELFNEMAVEG------IDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGC 309

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+V T+TSL++G+       EA  L+  M+ +G +PN V +N +++ LC  GKM EA  
Sbjct: 310 SPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVS 369

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M + GV P+ + Y+TL+DGF   G +  A E++  M +NGC+ +V  Y  +++  C
Sbjct: 370 VSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLC 429

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +N     AL L   M +    P  +T+NT
Sbjct: 430 RNSMFNHALHLIENMANGNCPPNTITFNT 458



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 157/309 (50%), Gaps = 7/309 (2%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            L L+ R+   G  P+   YN LI+  C  G++     V  ++ R+   P+  T+++LI 
Sbjct: 332 ALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLID 391

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
           G      ++ A+ ++ K+   GC P+V  YT +++ LCR      AL+L E MANGN   
Sbjct: 392 GFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGN--- 448

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
              C P+ IT++T   GLC  G  + A ++  +M+     P+V TY  ++ G   A    
Sbjct: 449 ---CPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTR 505

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA  +  E+ +  ++ N+VT+N I++  C  G    A ++   ++  G +PD+  YNT++
Sbjct: 506 EALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVI 565

Query: 276 DGFCLTGRVNRAKELFVSMESNG-CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
             +C  G V  A +L   +   G    DVF+Y  L+ G C    ++ A+    +M+++GI
Sbjct: 566 YAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGI 625

Query: 335 RPTVVTYNT 343
            P   T+N 
Sbjct: 626 CPNRATWNA 634



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 150/330 (45%), Gaps = 38/330 (11%)

Query: 42  RLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101
           +L  I    DL+   I+IN + + G          RI      P    +  ++  L +E+
Sbjct: 100 KLEGISCNEDLFV--IVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSEN 157

Query: 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161
           +      ++  ++  G + +V+TY  L+  LC+      A  L  EM+         C P
Sbjct: 158 KFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKG------CIP 211

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKD------------------------------ 191
           DA++Y+T+   +C+ G V++A+EL +++K                               
Sbjct: 212 DAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAV 271

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           E I+PDV+TY+++I       +   A  +  +M  +G  PNV TF  +M      G++ E
Sbjct: 272 EGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCE 331

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  L   MIQ G  P+   YNTL+ G C  G++  A  +   ME NG   +  +Y  LI+
Sbjct: 332 ALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLID 391

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G+ K  ++ GA  ++++M++ G  P VV Y
Sbjct: 392 GFAKAGDLVGASEIWNKMITNGCLPNVVVY 421



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 155/322 (48%), Gaps = 7/322 (2%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           S P   ++N L   L         +S+ +++   G+FP+  TY+ LI+ F K G +    
Sbjct: 344 SEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGAS 403

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +  +++ +   P+ V +T ++  LC  S    A  L   +    C P+  T+ T I GL
Sbjct: 404 EIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGL 463

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
           C +G T  A+ +  +M     ++G  C P+  TY+ + DGL       +A ++  ++++ 
Sbjct: 464 CCSGKTEWAMKVLNQMR----QYG--CAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEM 517

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
            I  ++VTY +++ GFC+A  +  A  +  +++  G +P+ +T+N ++   CK G++  A
Sbjct: 518 EIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTA 577

Query: 253 SRLLELMIQIGV-RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
            +L++ + + G   PD   Y +L+ G C    V+ A      M + G   +  ++  L+ 
Sbjct: 578 IQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVR 637

Query: 312 GYCKNKEIEGALSLYSEMLSKG 333
           G        G + +   +L+ G
Sbjct: 638 GLFSKLGHLGPIHIVDNILANG 659



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 7/188 (3%)

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
           G+ C  D   +  + +   + G  ++A + F ++ +    P V  Y  ++      N + 
Sbjct: 103 GISCNED--LFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQ 160

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
               ++  M   G++ NV T+N+++  LCKN ++D A +LL  M   G  PDA  Y T++
Sbjct: 161 MINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVV 220

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
              C  G+V  A+EL + ++S      V  Y  LING+C+  ++E    L++EM  +GI 
Sbjct: 221 SSMCRLGKVEEARELSMRIKS-----FVPVYNALINGFCREHKMEEVFELFNEMAVEGID 275

Query: 336 PTVVTYNT 343
           P V+TY+T
Sbjct: 276 PDVITYST 283



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 73/145 (50%)

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           +TYT++I+   Y  D +  + L   M  +G+  N   F +++N   + G  ++A +    
Sbjct: 74  LTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYR 133

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           + + G +P   +YN ++D      +      ++ +M+ +G   +V++Y +L+   CKN  
Sbjct: 134 IGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDR 193

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A  L +EM  KG  P  V+Y T
Sbjct: 194 VDAARKLLAEMSYKGCIPDAVSYTT 218



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 7/167 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R +   P V ++N +   L   K     L +   +  + +  +L TYN +++ FC  G 
Sbjct: 479 MRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGM 538

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYT 126
                 + G++L     PD++T+ ++I   C +  +  A  L  +L   G   PDVFTYT
Sbjct: 539 FKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYT 598

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
           +L+ G+C       A+   ++M N       +C P+  T++ +  GL
Sbjct: 599 SLLWGVCNWIGVDEAVVHLDKMINEG-----IC-PNRATWNALVRGL 639


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 174/341 (51%), Gaps = 7/341 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M+      P V ++ +L   L ++   +    + +++   G+FP + TYN LIN
Sbjct: 321 FNLFDEMI-ARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALIN 379

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK GRV P F +L  + +    P+  TF  L++GLC   +  +A  L  ++   G  P
Sbjct: 380 GYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSP 439

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+ +Y  LI+GLCR GH  VA  L   M + + E      PD +T++ I +  CK+G  D
Sbjct: 440 DIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLE------PDCLTFTAIINAFCKQGKAD 493

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A      M  + I+ D VT T+LI G C      +A  +   ++   +     + NVI+
Sbjct: 494 VASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVIL 553

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L K  K+ E   +L  + ++G+ P    Y TL+DG   +G ++ +  +   M+ +GC+
Sbjct: 554 DMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCL 613

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +V+ Y I+ING C+   +E A  L S M   G+ P  VTY
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTY 654



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 162/341 (47%), Gaps = 6/341 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R     P   S++IL   L +    +    L  ++   G  P   TY +LI   
Sbjct: 252 VFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKAL 311

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G +   F +   ++     P+  T+T LI GLC + +I EA  +  K+   G  P V
Sbjct: 312 CDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSV 371

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  LING C+ G  + A  L   M          CKP+  T++ + +GLC+ G   KA
Sbjct: 372 ITYNALINGYCKDGRVVPAFELLTVMEKR------ACKPNVRTFNELMEGLCRVGKPYKA 425

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L  +M D  ++PD+V+Y  LI G C     N A  L   M    ++P+ +TF  I+N 
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINA 485

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK GK D AS  L LM++ G+  D     TL+DG C  G+   A  +  ++     +  
Sbjct: 486 FCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTT 545

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             S  ++++   K  +++  L++  ++   G+ P+VVTY T
Sbjct: 546 PHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTT 586



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 155/305 (50%), Gaps = 7/305 (2%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           ++R+ + G    +  Y  ++N  CK G      + + +IL+  F  D+   TSL+ G C 
Sbjct: 183 YRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCR 242

Query: 100 ESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
              + +A  +F  +   G C P+  +Y+ LI+GLC  G    A  L ++M    GE G  
Sbjct: 243 GLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQM----GEKG-- 296

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C+P   TY+ +   LC  G +DKA  LF +M      P+V TYT LI G C      EA 
Sbjct: 297 CQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEAN 356

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            +  +M+  G+ P+V+T+N ++N  CK+G++  A  LL +M +   +P+   +N LM+G 
Sbjct: 357 GVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G+  +A  L   M  NG   D+ SY +LI+G C+   +  A  L + M S  + P  
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDC 476

Query: 339 VTYNT 343
           +T+  
Sbjct: 477 LTFTA 481



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 157/318 (49%), Gaps = 6/318 (1%)

Query: 26  CLAKNKHYDTVLSLFKRLNSIGLFPDLYT-YNILINCFCKMGRVSPGFVVLGRILRSCFT 84
           C    K    ++S F  L  +  F   Y  Y+ L+    K+      +V   R+    F 
Sbjct: 133 CSRCEKEMLKLISCFDELREVSGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFV 192

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNL 144
              + + +++  LC       A     K+   G   D    T+L+ G CR  +   AL +
Sbjct: 193 VGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKV 252

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
           F+ M+         C P++++YS +  GLC+ G +++A  L  +M ++   P   TYT L
Sbjct: 253 FDLMSREG-----TCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVL 307

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I+  C     ++A  LF EM+ +G +PNV T+ V+++ LC++GK++EA+ +   M++ G+
Sbjct: 308 IKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGI 367

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            P    YN L++G+C  GRV  A EL   ME   C  +V ++  L+ G C+  +   A+ 
Sbjct: 368 FPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVH 427

Query: 325 LYSEMLSKGIRPTVVTYN 342
           L   ML  G+ P +V+YN
Sbjct: 428 LLKRMLDNGLSPDIVSYN 445



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 159/369 (43%), Gaps = 51/369 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+N+L   L +  H +    L   +NS  L PD  T+  +IN FCK G+       
Sbjct: 439 PDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAF 498

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF---TKLRAFGCKPDVFTYTTLING 131
           LG +LR   + D VT T+LI G+C   +  +A  +     K+R       +     +++ 
Sbjct: 499 LGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSK 558

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+    +  L    ++       G+V  P  +TY+T+ DGL + G +  +  +   MK 
Sbjct: 559 GCKLKEELAMLGKINKL-------GLV--PSVVTYTTLVDGLIRSGDISGSFRMLELMKL 609

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               P+V  YT +I G C      EA+ L   M D GV PN VT+ V++     NGK+D 
Sbjct: 610 SGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDR 669

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA------KELFVSM----------- 294
           A   +  M++ G   +  +Y++L+ GF L+ +  R       KEL   +           
Sbjct: 670 ALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLC 729

Query: 295 --------------ESNGCMRDVFSYG--------ILINGYCKNKEIEGALSLYSEMLSK 332
                         ESNG ++ +   G        I++  YC  K+    + L + +L  
Sbjct: 730 IFLVTRLCKEGRTDESNGLVQTILKSGVFLEKAIDIIMESYCSKKKHTKCVELITLVLKS 789

Query: 333 GIRPTVVTY 341
           G  P+  ++
Sbjct: 790 GFVPSFKSF 798



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 115/298 (38%), Gaps = 39/298 (13%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +RM  +P    S N++   L+K       L++  ++N +GL P + TY  L++   + G 
Sbjct: 540 MRMLTTPH---SLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGD 596

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +S  F +L  +  S   P+   +T +I GLC   R+ EA  L + ++  G  P+  TYT 
Sbjct: 597 ISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTV 656

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEF----------GVVCKPDAITYST--------- 168
           ++ G    G    AL     M     E           G V     I  +          
Sbjct: 657 MVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKELIS 716

Query: 169 ---------------ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                          +   LCKEG  D++  L   +    +  +      ++  +C    
Sbjct: 717 VVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSGVFLEKAIDI-IMESYCSKKK 775

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL-LELMIQIGVRPDASV 270
             +   L   ++  G  P+  +F +++  L K G  + A  L +EL+   GV   + V
Sbjct: 776 HTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEGDTERARELVMELLTSNGVVEKSGV 833


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 170/337 (50%), Gaps = 6/337 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ML   P+P  V    ++ G +   +  +    L+K +   G  PD +T+NI+I+  CK G
Sbjct: 327 MLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKG 386

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +      L  +++  F P+ +T+T LI G C +    EA+ +   + A G   +   Y 
Sbjct: 387 YLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYN 446

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI  LC+ G    AL ++ EM++        CKPD  T++++  GLCK   +++A  L+
Sbjct: 447 CLIGALCKDGKIQDALQMYGEMSSKG------CKPDIYTFNSLIYGLCKNDKMEEALGLY 500

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M  E +  + VTY +LI  F       +A  L  EM  +G   + +T+N ++  LCK 
Sbjct: 501 RDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKT 560

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G  ++   L+E M    + P  +  N L++ FC TG+VN A +    M   G   D+ +Y
Sbjct: 561 GATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTY 620

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LING CK    + AL+L++ + +KGI P  VTYNT
Sbjct: 621 NSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNT 657



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 169/330 (51%), Gaps = 11/330 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+N++   L          ++F  + S G+ P +YT+ +++  FC +  V     +
Sbjct: 163 PTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSL 222

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    P+++ +  LI  L   +R+ EA  L  ++   GC+PDV T+  +I+GLC+
Sbjct: 223 LRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCK 282

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L + M   +         DA+    +  GLC+ G VD+A+ +  K+     
Sbjct: 283 AGRIHEAAKLHDRMLLRD------FTADALIQGYLMHGLCRMGKVDEARAMLSKIP---- 332

Query: 195 NPDVVTYTSLIRGFCYANDWNEAK-CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           NP+ V Y +LI G+  +  + EAK  L+  M+  G +P+  TFN++++ LCK G +  A 
Sbjct: 333 NPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSAL 392

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
             L+ M++ G  P+   Y  L+DGFC  G    A ++  SM + G   +   Y  LI   
Sbjct: 393 EFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGAL 452

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK+ +I+ AL +Y EM SKG +P + T+N+
Sbjct: 453 CKDGKIQDALQMYGEMSSKGCKPDIYTFNS 482



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 164/328 (50%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FNI+   L K  +  + L     +   G  P++ TY ILI+ FCK G       V
Sbjct: 370 PDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKV 429

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +     + + V +  LI  LC + +I +A  ++ ++ + GCKPD++T+ +LI GLC+
Sbjct: 430 VNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCK 489

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L+ +M       GV+   + +TY+T+     +   + +A +L  +M+    
Sbjct: 490 NDKMEEALGLYRDMLLE----GVIA--NTVTYNTLIHAFLRLELIQQADKLVGEMRFRGC 543

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D +TY  LI+  C      +   L  +M  + + P++ + N+++N  C+ GK+++A +
Sbjct: 544 PLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQ 603

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  MIQ G+ PD   YN+L++G C  GR   A  LF  +++ G   D  +Y  LI+ YC
Sbjct: 604 FLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYC 663

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
                  A  L  + +S G  P  +T++
Sbjct: 664 YEGLFNDACQLLFKGVSNGFIPNEITWS 691



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 177/400 (44%), Gaps = 73/400 (18%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P    + +L   L++N   +  + L + +  +G  PD+ T+N +I+  CK GR+  
Sbjct: 229 HGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHE 288

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR---------------- 114
              +  R+L   FT DA+    L+ GLC   ++ EA A+ +K+                 
Sbjct: 289 AAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVV 348

Query: 115 ----------------AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
                             G +PD FT+  +I+GLC+ G+ + AL   +EM     E    
Sbjct: 349 SGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFE---- 404

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
             P+ ITY+ + DG CK+G  ++A ++   M  + ++ + V Y  LI   C      +A 
Sbjct: 405 --PNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDAL 462

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            ++ EM  +G +P++ TFN ++  LCKN KM+EA  L   M+  GV  +   YNTL+  F
Sbjct: 463 QMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAF 522

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSY-------------------------------- 306
                + +A +L   M   GC  D  +Y                                
Sbjct: 523 LRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSI 582

Query: 307 ---GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               ILIN +C+  ++  AL    +M+ +G+ P +VTYN+
Sbjct: 583 NSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNS 622



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 29/266 (10%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N L G L K+      L ++  ++S G  PD+YT+N LI   CK  ++     +   +L
Sbjct: 445 YNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDML 504

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                 + VT+ +LI        I +A  L  ++R  GC  D  TY  LI  LC+TG T 
Sbjct: 505 LEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATE 564

Query: 140 VALNLFEEM---------ANGNGEFGVVCK--------------------PDAITYSTIT 170
             L L E+M          + N      C+                    PD +TY+++ 
Sbjct: 565 KCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLI 624

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           +GLCK G   +A  LF  ++ + I+PD VTY +LI  +CY   +N+A  L  + +  G  
Sbjct: 625 NGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFI 684

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLL 256
           PN +T+++++N   KN    E   +L
Sbjct: 685 PNEITWSILINYFVKNNSDSEQFTIL 710



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 5/190 (2%)

Query: 155 FGVVC-KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           +GV C +P   +Y+ + + L        A  +F  M    I+P V T+  +++ FC  N+
Sbjct: 156 WGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNE 215

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            + A  L  +M   G  PN + + ++++ L +N +++EA +LLE M  +G  PD   +N 
Sbjct: 216 VDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFND 275

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           ++ G C  GR++ A +L   M       D    G L++G C+  +++ A +    MLSK 
Sbjct: 276 VIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARA----MLSKI 331

Query: 334 IRPTVVTYNT 343
             P  V YNT
Sbjct: 332 PNPNTVLYNT 341



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 84/169 (49%), Gaps = 8/169 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    P    ++N L   L K    +  L L +++    +FP + + NILIN FC+ G+
Sbjct: 538 MRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGK 597

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V+     L  +++   TPD VT+ SLI GLC   R  EA  LF  L+A G  PD  TY T
Sbjct: 598 VNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNT 657

Query: 128 LINGLCRTGHTIVALN-LFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           LI+  C  G    A   LF+ ++NG         P+ IT+S + +   K
Sbjct: 658 LISRYCYEGLFNDACQLLFKGVSNG-------FIPNEITWSILINYFVK 699



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 60/159 (37%), Gaps = 36/159 (22%)

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL--------------------LEL- 258
           L  +M D+G       F +IM    K G   +A+RL                    LE+ 
Sbjct: 116 LLKQMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEIL 175

Query: 259 ---------------MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
                          M+  G+ P    +  +M  FC+   V+ A  L   M  +GC+ + 
Sbjct: 176 VAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNS 235

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             Y +LI+   +N  +  A+ L  EM   G  P V T+N
Sbjct: 236 IIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFN 274


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 171/328 (52%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++++L     K    +    L+ R+    + P  +T NI+IN  CK GR S     
Sbjct: 501 PNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDR 560

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++++  F P  +T+  +I G   E  +  A A++T++   G  P+VFTYT LING C+
Sbjct: 561 LKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCK 620

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           + +  +AL + +EM N   E       D   Y  + DG C++G +  A +L  ++++  +
Sbjct: 621 SNNMDLALKVMDEMKNKGIEL------DVTVYCALIDGFCRKGDMVNASQLLSELQEVGL 674

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ V Y+S+I GF    +   A  L   M+++G+  ++  +  +++ L K GK+  AS 
Sbjct: 675 SPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASE 734

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   M+  G+ PD   Y+ L+ G C  G++  A+++   M+       VF Y  LI G+ 
Sbjct: 735 LYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHF 794

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   ++ A  L++EML KG+ P   TY+
Sbjct: 795 KEGNLQEAFRLHNEMLDKGLVPDDTTYD 822



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           K    D+ L LF ++N  G+ P+  TY ++I   CK G +   + +  ++     +P   
Sbjct: 341 KQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVF 400

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
              SLI+G        EA+ LF +  A G   +VFTY +L++ LC+ G    A +++E+M
Sbjct: 401 NVNSLIRGYLKARSPEEASKLFDEAVACGI-ANVFTYNSLLSWLCKEGKMSEACSIWEKM 459

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                  GV  +P  ++Y+ +  G C++G +D A  +F++M ++ + P+++TY+ L+ G+
Sbjct: 460 VRK----GV--RPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGY 513

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
               D   A  L+  M  + + P+  T N+I+N LCK G+  E+   L+ ++Q G  P  
Sbjct: 514 FKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTC 573

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             YN ++DGF   G VN A  ++  M   G   +VF+Y  LING+CK+  ++ AL +  E
Sbjct: 574 MTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDE 633

Query: 329 MLSKGIRPTVVTY 341
           M +KGI   V  Y
Sbjct: 634 MKNKGIELDVTVY 646



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 167/341 (48%), Gaps = 7/341 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I++ M+R    P  V   N++ G   +    D+   +F  +   GL P+L TY++L++ +
Sbjct: 455 IWEKMVRKGVRPSVVSYNNMILG-HCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGY 513

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K G     F +  R+      P   T   +I GLC   R  E+     KL   G  P  
Sbjct: 514 FKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTC 573

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +I+G  + G    AL ++ EM     + GV   P+  TY+ + +G CK   +D A
Sbjct: 574 MTYNCIIDGFVKEGSVNSALAVYTEMC----KIGV--SPNVFTYTNLINGFCKSNNMDLA 627

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            ++  +MK++ I  DV  Y +LI GFC   D   A  L  E+ + G+ PN V ++ +++ 
Sbjct: 628 LKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISG 687

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
             K   M+ A  L + MI  G+  D  +Y TL+ G    G++  A EL+  M + G M D
Sbjct: 688 FRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPD 747

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + +Y +LI+G C   ++E A  +  +M  K + PTV  YNT
Sbjct: 748 LITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNT 788



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 183/357 (51%), Gaps = 30/357 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N L     K +  +    LF    + G+  +++TYN L++  CK G++S    +
Sbjct: 397 PTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI-ANVFTYNSLLSWLCKEGKMSEACSI 455

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +++R    P  V++ ++I G C +  +  A  +F ++   G KP++ TY+ L++G  +
Sbjct: 456 WEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFK 515

Query: 135 TGHTIVALNLFEEMANGN---GEF------GVVCK--------------------PDAIT 165
            G T  A  L++ M   N    +F        +CK                    P  +T
Sbjct: 516 KGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMT 575

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+ I DG  KEG V+ A  ++ +M    ++P+V TYT+LI GFC +N+ + A  +  EM 
Sbjct: 576 YNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMK 635

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           ++G++ +V  +  +++  C+ G M  AS+LL  + ++G+ P+  VY++++ GF     + 
Sbjct: 636 NKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNME 695

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            A  L   M + G   D+  Y  LI+G  K  ++  A  LY+EML+KGI P ++TY+
Sbjct: 696 AALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYS 752



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 163/338 (48%), Gaps = 42/338 (12%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC- 98
           F+   + G+  D   Y+I+I   CK         +L  +    + P  V FT +I G+C 
Sbjct: 247 FREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVI-GVCM 305

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
            + +++EA  +  ++ + G   +V   TTL+ G C+ G    AL LF++M N NG    +
Sbjct: 306 KQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKM-NENG----I 360

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
           C P+ +TY+ I +  CK G +DKA E++ +MK+++I+P V    SLIRG+  A    EA 
Sbjct: 361 C-PNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEAS 419

Query: 219 CLFIE----------------------------------MMDQGVQPNVVTFNVIMNELC 244
            LF E                                  M+ +GV+P+VV++N ++   C
Sbjct: 420 KLFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHC 479

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           + G MD A+ +   M++ G++P+   Y+ LMDG+   G    A  L+  M         F
Sbjct: 480 QQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDF 539

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +  I+ING CK      +     +++ +G  PT +TYN
Sbjct: 540 TCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYN 577



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 44/271 (16%)

Query: 16  PVC-SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P C ++N +     K    ++ L+++  +  IG+ P+++TY  LIN FCK   +     V
Sbjct: 571 PTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKV 630

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP-------------- 120
           +  +       D   + +LI G C +  ++ A+ L ++L+  G  P              
Sbjct: 631 MDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRK 690

Query: 121 ---------------------DVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVV 158
                                D+  YTTLI+GL + G  + A  L+ EM A G       
Sbjct: 691 LQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKG------- 743

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
             PD ITYS +  GLC +G ++ A+++   M  + + P V  Y +LI G     +  EA 
Sbjct: 744 IMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAF 803

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            L  EM+D+G+ P+  T+++++N   K+G +
Sbjct: 804 RLHNEMLDKGLVPDDTTYDILVNGKVKDGNL 834



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 128/275 (46%), Gaps = 10/275 (3%)

Query: 73  VVLGRILRSC----FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
           VV+ R++ S     F  D+  F  L+       RI +A   F  L      P +      
Sbjct: 136 VVVARLIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIF 195

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           ++ L +      A +++ +MA+     GV  K D  T S +     +EG +++A+  F +
Sbjct: 196 LSELVKNNMIREARDVYNKMASK----GV--KGDCATISVMIRASMREGKLEEAEGWFRE 249

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
            K++ +  D   Y+ +I   C   D   A  L  EM D+G  P+ V F  ++    K GK
Sbjct: 250 AKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGK 309

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           M EA ++   M+  G   +  V  TLM G+C  G ++ A ELF  M  NG   +  +Y +
Sbjct: 310 MLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAV 369

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +I   CKN  ++ A  +Y++M +K I PTV   N+
Sbjct: 370 IIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNS 404


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 159/301 (52%), Gaps = 8/301 (2%)

Query: 44  NSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103
           N I     + +YN L+    +   +     V   +L     P+  T  +++        I
Sbjct: 171 NDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNI 230

Query: 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163
           +EA    +K+   G  PD FTYT+LI G CR      A  +F  M N        C+ + 
Sbjct: 231 VEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKG------CRRNE 284

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN-EAKCLFI 222
           ++Y+TI  GLC+ G +D+   LF KM++++  P V TYT +I    + ND N E   LF 
Sbjct: 285 VSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL-FGNDRNLEGMDLFN 343

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM ++  +PNV T+ V+++ +CK  K+DE+ R+L  M++ G+ P    YN L+ G+C  G
Sbjct: 344 EMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEG 403

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           R+  A E+   MESN C  +  +Y  LI G+ K K +  A++L S+ML   + P++VTYN
Sbjct: 404 RIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYN 463

Query: 343 T 343
           +
Sbjct: 464 S 464



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 190/391 (48%), Gaps = 64/391 (16%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S+N L   LA+    D +  ++  + +  + P++YT N ++N + KMG +    + + 
Sbjct: 179 VRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVS 238

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           +I ++  +PD+ T+TSLI G C  + +  A  +F  +   GC+ +  +YTT+I+GLC  G
Sbjct: 239 KIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAG 298

Query: 137 HTIVALNLFEEMANGN-------------GEFG----------------VVCKPDAITYS 167
                ++LF++M   +               FG                  C+P+  TY+
Sbjct: 299 RIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYT 358

Query: 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA---------------- 211
            + D +CKE  +D+++ +  +M ++ + P VVTY +LIRG+C                  
Sbjct: 359 VMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESN 418

Query: 212 ------NDWNEAKC-------------LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
                   +NE  C             L  +M++  + P++VT+N +++  CK G  D A
Sbjct: 419 NCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSA 478

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            +LL+L+ + G+ PD   Y+  +D  C + R+  A +LF S++  G   +   Y  LI+G
Sbjct: 479 YKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDG 538

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +CK  +I+ A+SL   M S+   P   TYN+
Sbjct: 539 HCKAGKIDEAISLLERMHSEDCLPNSSTYNS 569



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 165/334 (49%), Gaps = 6/334 (1%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R     P V ++ ++   + K +  D    +   +   GL P + TYN LI  +C+ GR
Sbjct: 345 MRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGR 404

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +LG +  +   P+  T+  LI G      + +A  L +K+      P + TY +
Sbjct: 405 IEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNS 464

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+  C+ GH   A  L + +     E G+V  PD  TYS   D LCK   +++A +LF 
Sbjct: 465 LIHVQCKAGHFDSAYKLLDLLK----ENGLV--PDQWTYSVFIDTLCKSKRMEEACDLFN 518

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            +K++ I  + V YT+LI G C A   +EA  L   M  +   PN  T+N ++  +CK G
Sbjct: 519 SLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEG 578

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           K+ E   ++E M ++GV+P  + Y  L++     G  + A  +F  M S G   DV++Y 
Sbjct: 579 KVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYT 638

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             I+ YC +  ++ A  + + M+  G+ P  +TY
Sbjct: 639 AFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTY 672



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 159/323 (49%), Gaps = 6/323 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  +   L +    D  +SLFK++     +P + TY ++I+      R   G  +   +
Sbjct: 286 SYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEM 345

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+  T+T ++  +C E ++ E+  +  ++   G  P V TY  LI G C  G  
Sbjct: 346 RERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRI 405

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             AL +   M + N      C+P+  TY+ +  G  K   V KA  L  KM +  + P +
Sbjct: 406 EAALEILGLMESNN------CRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSL 459

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY SLI   C A  ++ A  L   + + G+ P+  T++V ++ LCK+ +M+EA  L   
Sbjct: 460 VTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNS 519

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           + + G++ +  +Y  L+DG C  G+++ A  L   M S  C+ +  +Y  LI G CK  +
Sbjct: 520 LKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGK 579

Query: 319 IEGALSLYSEMLSKGIRPTVVTY 341
           ++  LS+   M   G++PTV TY
Sbjct: 580 VQEGLSMVENMSKMGVKPTVATY 602



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 151/328 (46%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L     +    +  L +   + S    P+  TYN LI  F K   V     +
Sbjct: 387 PSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTL 446

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++L S  TP  VT+ SLI   C       A  L   L+  G  PD +TY+  I+ LC+
Sbjct: 447 LSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCK 506

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +     A +LF    N   E G+  K + + Y+ + DG CK G +D+A  L  +M  E+ 
Sbjct: 507 SKRMEEACDLF----NSLKEKGI--KANEVMYTALIDGHCKAGKIDEAISLLERMHSEDC 560

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  TY SLI G C      E   +   M   GV+P V T+ +++ E+ + G  D A+R
Sbjct: 561 LPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANR 620

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M+  G +PD   Y   +  +C +G V  A+ +   M   G M D  +Y +LI+ Y 
Sbjct: 621 VFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYE 680

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +      A ++   ML  G  P+   +N
Sbjct: 681 RLGLAYDAFNVLKRMLDAGCDPSHPIWN 708



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 6/261 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     K  H+D+   L   L   GL PD +TY++ I+  CK  R+     +
Sbjct: 457 PSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDL 516

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       + V +T+LI G C   +I EA +L  ++ +  C P+  TY +LI G+C+
Sbjct: 517 FNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCK 576

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G     L++ E M+    + GV  KP   TY+ + + + +EG  D A  +F +M     
Sbjct: 577 EGKVQEGLSMVENMS----KMGV--KPTVATYTILIEEMLREGDFDHANRVFNQMVSFGH 630

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV TYT+ I  +C + +  EA+ +   M++ GV P+ +T+ ++++   + G   +A  
Sbjct: 631 KPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFN 690

Query: 255 LLELMIQIGVRPDASVYNTLM 275
           +L+ M+  G  P   ++N L+
Sbjct: 691 VLKRMLDAGCDPSHPIWNNLI 711


>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 172/310 (55%), Gaps = 18/310 (5%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
           FK     G+F D   YNI+++  CK+G+V     +L  +     + D V +T+LI G C 
Sbjct: 371 FKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCL 430

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
           + ++++A  +F +++  G +PD+ TY  L+ G  R G    AL L + +    G  G+  
Sbjct: 431 QGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCI----GTQGL-- 484

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           KP++ T++ I +GLC  G V +A+     ++D+ +      Y++++ G+C AN   +A  
Sbjct: 485 KPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLE----NYSAMVDGYCKANFTRKAYE 540

Query: 220 LFIEMMDQG--------VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           LF  +  QG        V+PN + +  ++   C++G M  A  + +++++ G+ PD   Y
Sbjct: 541 LFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITY 600

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
             +++G+C    +  A+++F  M+  G   DV +Y ++++G+ K   ++ A++LY EM++
Sbjct: 601 TMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIA 660

Query: 332 KGIRPTVVTY 341
           +G++P +VTY
Sbjct: 661 RGLQPDIVTY 670



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 185/344 (53%), Gaps = 17/344 (4%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            I+ ++ R+  +P    ++ I    L +  +++  + +F+ +   G+ P+  T +  I  
Sbjct: 213 AIYRHLKRLGLNPNDY-TYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEG 271

Query: 62  FCKMGRVSPGFVVLGRILRSCFTP-DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            C   R   G+  L R LR+   P D   +T++I+G C+E ++ EA  +F  +   G  P
Sbjct: 272 LCSHKRSDLGYEAL-RALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAP 330

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK----------PDAITYSTIT 170
           D + Y  LI+  C+ G+ + A+ L  +M +   +  +V +           D + Y+ + 
Sbjct: 331 DGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGIFLDEVLYNIVV 390

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           D LCK G V++A EL  +MK   ++ DVV YT+LI G+C      +AK +F EM ++G++
Sbjct: 391 DALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIE 450

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P++VT+N+++    +NG   EA  LL+ +   G++P+++ +N +++G C+ G+V  A E 
Sbjct: 451 PDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEA-EA 509

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           F++   + C+ +   Y  +++GYCK      A  L+S +  +GI
Sbjct: 510 FLNTLEDKCLEN---YSAMVDGYCKANFTRKAYELFSRLSKQGI 550



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 152/326 (46%), Gaps = 22/326 (6%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92
           +D  +    +    G  P + + N L+N   + G++     +   + R    P+  T+  
Sbjct: 173 FDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGI 232

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
            IK LC +    EA  +F ++   G  P+  T +T I GLC    + +       +   N
Sbjct: 233 FIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAAN 292

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                    D   Y+ +  G C E  + +A+++F+ M +E I PD   Y +LI  +C A 
Sbjct: 293 WPI------DTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAG 346

Query: 213 DWNEAKCLFIEMMDQGVQPNVVT----------------FNVIMNELCKNGKMDEASRLL 256
           +  +A  L  +M+  G++ N+V                 +N++++ LCK GK++EA  LL
Sbjct: 347 NLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELL 406

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M    +  D   Y TL+ G+CL G++  AK +F  M+  G   D+ +Y IL+ G+ +N
Sbjct: 407 NEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRN 466

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
              + AL L   + ++G++P   T+N
Sbjct: 467 GLKKEALELLDCIGTQGLKPNSATHN 492



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 127/244 (52%), Gaps = 6/244 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           ++F+ +   G+ PD+ TYNIL+  F + G       +L  I      P++ T   +I+GL
Sbjct: 439 NMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGL 498

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN--GEF 155
           C   ++ EA A    L    C  +   Y+ +++G C+   T  A  LF  ++        
Sbjct: 499 CMAGKVKEAEAFLNTLED-KCLEN---YSAMVDGYCKANFTRKAYELFSRLSKQGILRML 554

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
            +  +P+ I Y  +    C++G + +A+ +F  + +  I PDV+TYT +I G+C  N   
Sbjct: 555 ALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLR 614

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
           EA+ +F +M ++G++P+V+T+ V+++   K   + +A  L + MI  G++PD   Y  L+
Sbjct: 615 EARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVTYTALL 674

Query: 276 DGFC 279
            G C
Sbjct: 675 PGKC 678



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 25/288 (8%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
           ++L+  + ++G        L +  R  F P  ++   L+  L    +I  A A++  L+ 
Sbjct: 161 DMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKR 220

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
            G  P+ +TY   I  LCR G+   A+++F EM     E GV   P+A+T ST  +GLC 
Sbjct: 221 LGLNPNDYTYGIFIKALCRKGNFEEAVDVFREME----EAGV--NPNAVTCSTYIEGLCS 274

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
               D   E    ++  N   D   YT++IRGFC      EA+ +FI+M+++G+ P+   
Sbjct: 275 HKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYI 334

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +  +++  CK G + +A  L   M+  G++               T  V++ KE      
Sbjct: 335 YGALIHAYCKAGNLLQAVALHNDMVSNGIK---------------TNLVDQFKEF----R 375

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +G   D   Y I+++  CK  ++E A+ L +EM  + +   VV Y T
Sbjct: 376 DSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTT 423



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 123/251 (49%), Gaps = 18/251 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NIL G  ++N      L L   + + GL P+  T+N +I   C  G+V      
Sbjct: 451 PDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAF 510

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR--------AFGCKPDVFTYT 126
           L  +   C       +++++ G C  +   +A  LF++L         A   +P+   Y 
Sbjct: 511 LNTLEDKCLE----NYSAMVDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYG 566

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LI   CR G    A  +F+ +     E G+   PD ITY+ + +G C+   + +A+++F
Sbjct: 567 KLIGAFCRDGDMKRAQLVFDMLV----ERGIT--PDVITYTMMINGYCRVNCLREARDIF 620

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             MK+  I PDV+TYT ++ G    N+  +A  L+ EM+ +G+QP++VT+  ++   C  
Sbjct: 621 NDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVTYTALLPGKCNF 680

Query: 247 GKMDEASRLLE 257
           G     ++ LE
Sbjct: 681 GSRHFDNQWLE 691



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 21/305 (6%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           S F +L   G   ++ TY  LI   C+          L R L+S  +    +  S++   
Sbjct: 82  SFFTQLKESGFQHNVDTYAALIRVLCRWR--------LERKLQSLLSEIVGSKESVLG-- 131

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG---NGE 154
                  +  ALF  LR  G + +    + LI  L       V + +F+E  +       
Sbjct: 132 ------FDITALFDVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKR 185

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
            G V  P  ++ + + + L + G +D A  ++  +K   +NP+  TY   I+  C   ++
Sbjct: 186 RGFV--PHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNF 243

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            EA  +F EM + GV PN VT +  +  LC + + D     L  +       D   Y  +
Sbjct: 244 EEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAV 303

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           + GFC   ++  A+++F+ M + G   D + YG LI+ YCK   +  A++L+++M+S GI
Sbjct: 304 IRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGI 363

Query: 335 RPTVV 339
           +  +V
Sbjct: 364 KTNLV 368



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 22/257 (8%)

Query: 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE----FGVVCKP 161
           A + FT+L+  G + +V TY  LI  LCR        +L  E+  G+ E    F +    
Sbjct: 80  AWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIV-GSKESVLGFDITALF 138

Query: 162 DAITYST-------------ITDGLCKE----GFVDKAKELFLKMKDENINPDVVTYTSL 204
           D +                 + D L K     G  D+A +   + K     P +++   L
Sbjct: 139 DVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFL 198

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           +         + A  ++  +   G+ PN  T+ + +  LC+ G  +EA  +   M + GV
Sbjct: 199 MNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGV 258

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            P+A   +T ++G C   R +   E   ++ +     D F+Y  +I G+C   +++ A  
Sbjct: 259 NPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAED 318

Query: 325 LYSEMLSKGIRPTVVTY 341
           ++ +M+++GI P    Y
Sbjct: 319 VFIDMVNEGIAPDGYIY 335



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 30/190 (15%)

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV--- 238
           A   F ++K+     +V TY +LIR  C      + + L  E++  G + +V+ F++   
Sbjct: 80  AWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIV--GSKESVLGFDITAL 137

Query: 239 ---------------------IMNELCKN----GKMDEASRLLELMIQIGVRPDASVYNT 273
                                +++ L K     G  DEA   L    + G  P     N 
Sbjct: 138 FDVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNF 197

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           LM+     G+++ A  ++  ++  G   + ++YGI I   C+    E A+ ++ EM   G
Sbjct: 198 LMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAG 257

Query: 334 IRPTVVTYNT 343
           + P  VT +T
Sbjct: 258 VNPNAVTCST 267


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 173/367 (47%), Gaps = 67/367 (18%)

Query: 42  RLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101
           R  S  + P   TY ILI+C C +G ++  F  LG+I+++    +A++FT +++ LCAE 
Sbjct: 3   RAGSKKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEK 62

Query: 102 RIMEAAALFTKLR-AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------ 154
           R  +A  +  +     GC PDVF+YT L+ GLC       A++L   MA           
Sbjct: 63  RTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVV 122

Query: 155 ------------------FGVVCK-------PDAITYSTITDGLCKEGFVDKAKELFLKM 189
                             + + C+       PD +T ++I DGLCK   +DKA+E+  +M
Sbjct: 123 SYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQM 182

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            D++I PD  TY SL+ G+  +    EA  +  +M   G  PN VT++++++ LCK G  
Sbjct: 183 FDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGH 242

Query: 250 DEASRLLELMIQI-----------------------------------GVRPDASVYNTL 274
            EA  +L  MIQ                                    GVRPD  ++N  
Sbjct: 243 TEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQ 302

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +  +   GR++ A   F  M   G M D+ SYG +I+G CK   ++ A+S + +M+  G+
Sbjct: 303 IYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGL 362

Query: 335 RPTVVTY 341
            P +V +
Sbjct: 363 SPDIVVF 369



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 177/347 (51%), Gaps = 25/347 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L      +      + + K+++  G  P+  TY++LI+C CK G  +    +
Sbjct: 189 PDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREI 248

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++S   P+  T+  L+ G   +  ++E   L   +   G +PD   +   I    +
Sbjct: 249 LNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVK 308

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+  F +M     + G++  PD I+Y T+ DGLCK G +D A   F +M D+ +
Sbjct: 309 CGRLDEAMLTFNKMR----QQGLM--PDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGL 362

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD+V +T+LI GF     W +A+ LF EMMD+G++P VV F  ++++L K GK+ EA  
Sbjct: 363 SPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKT 422

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES----------NGCMRDVF 304
           L +LM    V+P+   YN ++ G+ L G+++   +L   M S          N  + D+ 
Sbjct: 423 LFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDDML 482

Query: 305 SYGI---------LINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           S G+         LI+  C++  IE  L+L+ EMLSK  +   VT N
Sbjct: 483 SMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREMLSKAAKTDTVTEN 529



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 163/359 (45%), Gaps = 29/359 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S+  +     K        +LF  +   G+ PD+ T N +I+  CK+  +     
Sbjct: 118 PPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEE 177

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL ++      PD  T+ SL+ G  +  ++ EA  +  ++   G  P+  TY+ LI+ LC
Sbjct: 178 VLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLC 237

Query: 134 RTGHTIVALNLFEEMANGNGE----------FGVVCKPDAITYSTITDGLCKEGF----- 178
           + G    A  +   M    G            G   K D +  + + D + + G      
Sbjct: 238 KFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHH 297

Query: 179 --------------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
                         +D+A   F KM+ + + PD+++Y ++I G C     + A   F +M
Sbjct: 298 IFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQM 357

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +D G+ P++V F  +++     GK ++A  L   M+  G+RP   V+ T++D     G+V
Sbjct: 358 IDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKV 417

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             AK LF  M       +V SY  +I+GY    +++  L L  +MLS G++P  VT+NT
Sbjct: 418 TEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNT 476



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 161/363 (44%), Gaps = 44/363 (12%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLN-SIGLFPDLYTYNILINCFC-------------- 63
           SF  +   L   K     +++  R    +G  PD+++Y +L+   C              
Sbjct: 50  SFTPILRTLCAEKRTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHM 109

Query: 64  -----------------------KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100
                                  K   V   + +   +L     PD VT  S+I GLC  
Sbjct: 110 MAEDGDHCPPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKV 169

Query: 101 SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160
             + +A  +  ++      PD  TY +L++G   +G    A+ + ++M+  +G+      
Sbjct: 170 QAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSR-HGQ-----P 223

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           P+ +TYS + D LCK G   +A+E+   M     NP+V TY  L+ G+    D  E   L
Sbjct: 224 PNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNL 283

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
              M+  GV+P+   FN+ +    K G++DEA      M Q G+ PD   Y T++DG C 
Sbjct: 284 IDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCK 343

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            GR++ A   F  M  +G   D+  +  LI+G+    + E A  L+ EM+ +GIRPTVV 
Sbjct: 344 IGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVV 403

Query: 341 YNT 343
           + T
Sbjct: 404 FTT 406


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 177/326 (54%), Gaps = 7/326 (2%)

Query: 11  HPS-PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           HP     V  FN+L     +N      + L + + + G  PD+ TYN L+N FCK+G + 
Sbjct: 10  HPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLF 69

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               ++G I      P+ +T+T+LI   C    + +A  ++ ++      PDV TYT ++
Sbjct: 70  TAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIM 129

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           NGLC++G    A ++F EM     E GVV  P+  +Y+T+ D L KEG V +A  L  +M
Sbjct: 130 NGLCKSGKVEEAKSVFREME----EVGVV--PNRFSYATLIDSLFKEGNVAEAFVLQGRM 183

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I  DVV YT+L+ G   A   N A+ +F  ++++ + PN VT++ +++  CK G +
Sbjct: 184 VVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDV 243

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           ++   LL+ M +  + P+  VY++++DG+   G +N A ++   M     + +VF YG L
Sbjct: 244 NKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTL 303

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIR 335
           I+GY K  +   AL L+ EM S+G+ 
Sbjct: 304 IDGYFKADQRGIALDLFKEMKSRGLE 329



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 165/329 (50%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L K+   +   S+F+ +  +G+ P+ ++Y  LI+   K G V+  FV+
Sbjct: 120 PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVL 179

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            GR++      D V +T+L+ GL        A  +F  L      P+  TY+ LI+G C+
Sbjct: 180 QGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCK 239

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L +EM   +        P+ I YS+I DG  K+G +++A ++  KM   NI
Sbjct: 240 LGDVNKGELLLQEMEEKH------IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNI 293

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V  Y +LI G+  A+    A  LF EM  +G++ N    +  +N L ++G+M+EA  
Sbjct: 294 LPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADE 353

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+  G+ PD   Y ++MDGF   G+ + A  +   M       DV +Y +LING  
Sbjct: 354 LFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLF 413

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  + E   S ++ M   G+ P   T+NT
Sbjct: 414 KLGKYESE-SFHTGMRQLGLAPDSATFNT 441



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 165/326 (50%), Gaps = 7/326 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+L   L K   Y++  S    +  +GL PD  T+N +IN +CK G +     +L 
Sbjct: 402 VVAYNVLINGLFKLGKYESE-SFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P+++T   L++ LCA   I +   L   +   G  P   T+  +++   ++ 
Sbjct: 461 EMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSR 520

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
              V L++ +++       G+  K D  TY+T+    C+ G + +A  +F  M  + I  
Sbjct: 521 RADVILHMHDQLV------GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILA 574

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D++TY +LI G+C ++   +A  +  +M+ +GV PNV T+N+++  L     + EA+ L+
Sbjct: 575 DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLV 634

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M + G+ P+A+ Y+ L+ G    G +    +L+  M + G +    +Y +LI+ + K 
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKG 694

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
           K++  A  L  EM  +GI P   TY+
Sbjct: 695 KKMSQAKELMQEMQVRGIPPNSSTYD 720



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 157/328 (47%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  L     K       L LFK + S GL  + +  +  +N   + GR+     +
Sbjct: 295 PNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADEL 354

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD V +TS++ G     +  +A  +  ++       DV  Y  LINGL +
Sbjct: 355 FKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G        +E  +   G   +   PD+ T++T+ +  CKEG +  A +L  +MK   +
Sbjct: 415 LGK-------YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGL 467

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +T   L++  C A +  +   L  +M+  G  P   T   +++   K+ + D    
Sbjct: 468 KPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILH 527

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + ++ +GV+ D S YNTL+  FC  G + RA  +F  M   G + D+ +Y  LI+GYC
Sbjct: 528 MHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYC 587

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  ++ A +++S+ML++G+ P V TYN
Sbjct: 588 ISSHLKKAFAVHSQMLTEGVSPNVETYN 615



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 131/254 (51%), Gaps = 6/254 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F  LI G C    I  A  L   ++  G  PD+ TY TL+NG C+ G    A  L  E++
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
             N E      P+ ITY+T+ D  CK   ++ A  ++ +M  +++ PDVVTYT ++ G C
Sbjct: 80  LVNLE------PNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLC 133

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            +    EAK +F EM + GV PN  ++  +++ L K G + EA  L   M+  G+  D  
Sbjct: 134 KSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVV 193

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
           VY  LMDG    G  N A+++F  +     + +  +Y  LI+G+CK  ++     L  EM
Sbjct: 194 VYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEM 253

Query: 330 LSKGIRPTVVTYNT 343
             K I P V+ Y++
Sbjct: 254 EEKHIFPNVIVYSS 267



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 151/345 (43%), Gaps = 18/345 (5%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F   +R     P   +FN +     K  +    L L   + S GL P+  T NIL+   C
Sbjct: 423 FHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLC 482

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G +     +L  +L   F P   T  +++       R      +  +L   G K D+ 
Sbjct: 483 AAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLS 542

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLI+  CR G    A  +F++M       G     D ITY+ +  G C    + KA 
Sbjct: 543 TYNTLISTFCRLGMIRRATLVFKDM------MGKGILADIITYNALIHGYCISSHLKKAF 596

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +  +M  E ++P+V TY  L+ G   A    EA  L  +M ++G+ PN  T++++++  
Sbjct: 597 AVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGH 656

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G M E  +L   MI  G  P    YN L+  F    ++++AKEL   M+  G   + 
Sbjct: 657 GKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNS 716

Query: 304 FSYGILINGYCK-------NKEIE-----GALSLYSEMLSKGIRP 336
            +Y ILI G+ K       NK ++      A  L+ EM  KG  P
Sbjct: 717 STYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 161/361 (44%), Gaps = 40/361 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +  L   L K    +    +F+ L    L P+  TY+ LI+  CK+G V+ G ++L 
Sbjct: 192 VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQ 251

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P+ + ++S++ G   +  + EA  +  K+      P+VF Y TLI+G  +  
Sbjct: 252 EMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKAD 311

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
              +AL+LF+EM +   E       +     +  + L + G +++A ELF  M    + P
Sbjct: 312 QRGIALDLFKEMKSRGLE------ENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLP 365

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ----------------------------- 227
           D V YTS++ GF  A   ++A  +  EM ++                             
Sbjct: 366 DRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHT 425

Query: 228 -----GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
                G+ P+  TFN ++N  CK G +  A +LL  M   G++P++   N L+   C  G
Sbjct: 426 GMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAG 485

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            + +  +L   M   G      ++  +++   K++  +  L ++ +++  G++  + TYN
Sbjct: 486 EIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYN 545

Query: 343 T 343
           T
Sbjct: 546 T 546



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 129/296 (43%), Gaps = 44/296 (14%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           HP+P    +   +    +K++  D +L +  +L  +G+  DL TYN LI+ FC++G +  
Sbjct: 503 HPTP---TTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRR 559

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
             +V   ++      D +T+ +LI G C  S + +A A+ +++   G  P+V TY  L+ 
Sbjct: 560 ATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLG 619

Query: 131 GLCRTGHTIVALNLFEEM---------------ANGNGEFG-------VVCK-------P 161
           GL        A  L  +M                +G+G+ G       + C+       P
Sbjct: 620 GLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVP 679

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW------- 214
              TY+ +     K   + +AKEL  +M+   I P+  TY  LI G+   +         
Sbjct: 680 KTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSL 739

Query: 215 -----NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
                 EAK LF EM ++G  P   T   I   L K GK  +A R+L  + +  V+
Sbjct: 740 KRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKKKVK 795



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 67/113 (59%)

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           ++ +V  FNV+++  C+NG++  A  LLE M   G  PD   YNTLM+GFC  G +  AK
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +L   +       +V +Y  LI+ YCK++ +E AL +Y EM  K + P VVTY
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTY 125



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 78/150 (52%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I   V  +  LI G+C   + + A  L   M  +G  P++VT+N +MN  CK G +  A 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L+  +  + + P+   Y TL+D +C +  +  A  ++  M     + DV +Y  ++NG 
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK+ ++E A S++ EM   G+ P   +Y T
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 167/365 (45%), Gaps = 42/365 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     K    D    LF+ +  +G  PD+ TYN LINCFCK  ++   F  
Sbjct: 285 PDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHF 344

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +  S   P+ VT+++LI  LC E  + +A      +R  G  P+ FTYT+LI+  C+
Sbjct: 345 LHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCK 404

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+   AL L +EM      F VV      TY+T+ DGLCKEG + +A++LF  M    +
Sbjct: 405 AGYLSDALKLADEMLQVQVGFNVV------TYTTLLDGLCKEGRMMEAEDLFRAMIKAGV 458

Query: 195 NPDVVTYTSLIR-----------------------------------GFCYANDWNEAKC 219
            P++ TYT+L+                                    G C  N   E + 
Sbjct: 459 TPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEF 518

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +  EM   G++ N V + + M+   K GK  EA  LL+ M  +GV      +  L+DG C
Sbjct: 519 VMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLC 578

Query: 280 LTGRVNRAKELFVSMES-NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
             G V  A + F  M   N    +V     LI+G CKN  IE A  L+ EM  K + P  
Sbjct: 579 KKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDK 638

Query: 339 VTYNT 343
           + Y  
Sbjct: 639 IAYTA 643



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 161/327 (49%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S N     LAK    D     F+ +   G+   ++TYNI+I   CK G +     +
Sbjct: 215 PKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSL 274

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++ +   TPD VT+ SLI G      + E+  LF +++  GC+PDV TY  LIN  C+
Sbjct: 275 FHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCK 334

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A +   EM N         KP+ +TYST+ D LCKE  + +A +  L M+   +
Sbjct: 335 YEQMPKAFHFLHEMKNSG------LKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGL 388

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+  TYTSLI   C A   ++A  L  EM+   V  NVVT+  +++ LCK G+M EA  
Sbjct: 389 SPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAED 448

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   MI+ GV P+   Y  L+ G     RV  A EL   ++      D+  YG +I G C
Sbjct: 449 LFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLC 508

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
              ++E    + SEM + GIR   V Y
Sbjct: 509 SQNKLEECEFVMSEMKACGIRANSVIY 535



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 169/325 (52%), Gaps = 6/325 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++NI+ G + K     T  SLF ++  +GL PD+ TYN LI+ + K+G +   F +  
Sbjct: 252 VFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFE 311

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      PD +T+ +LI   C   ++ +A     +++  G KP+V TY+TLI+ LC+  
Sbjct: 312 EMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEH 371

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A+    +M        V   P+  TY+++ D  CK G++  A +L  +M    +  
Sbjct: 372 MLQQAIKFLLDMRR------VGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGF 425

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +VVTYT+L+ G C      EA+ LF  M+  GV PN+ T+  +++   KN +++ A  LL
Sbjct: 426 NVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELL 485

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + + +  ++PD  +Y T++ G C   ++   + +   M++ G   +   Y I ++ Y K 
Sbjct: 486 KEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKT 545

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
            +   AL+L  EM   G+  T+VT+
Sbjct: 546 GKTVEALNLLQEMCDLGVEVTIVTF 570



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 165/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    F+ LF    +    +     F R+    +FP   + N  +    K G+       
Sbjct: 180 PGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKF 239

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++ +       T+  +I  +C E  ++ A +LF +++  G  PD+ TY +LI+G  +
Sbjct: 240 FRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGK 299

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    +  LFEEM +      V C+PD ITY+ + +  CK   + KA     +MK+  +
Sbjct: 300 LGLLDESFCLFEEMKD------VGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGL 353

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+VVTY++LI   C  +   +A    ++M   G+ PN  T+  +++  CK G + +A +
Sbjct: 354 KPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALK 413

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+Q+ V  +   Y TL+DG C  GR+  A++LF +M   G   ++ +Y  L++G+ 
Sbjct: 414 LADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHI 473

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           KNK +E AL L  E+  K I+P ++ Y T
Sbjct: 474 KNKRVENALELLKEIKEKKIKPDLLLYGT 502



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 156/317 (49%), Gaps = 7/317 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++  L   L K         LF+ +   G+ P+L TY  L++   K  RV     +L 
Sbjct: 427 VVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLK 486

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            I      PD + + ++I GLC+++++ E   + ++++A G + +   YT  ++   +TG
Sbjct: 487 EIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTG 546

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            T+ ALNL +EM +   E  +V      T+  + DGLCK+G V++A + F +M D N+ P
Sbjct: 547 KTVEALNLLQEMCDLGVEVTIV------TFCVLIDGLCKKGLVEEAIDYFARMADFNLQP 600

Query: 197 D-VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           + V   T+LI G C  N    AK LF EM D+ + P+ + +  +++   K+    EA  +
Sbjct: 601 NNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNI 660

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M ++G+  D   Y +L+ G      V +A+     M   G + D      L+  Y +
Sbjct: 661 RSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYE 720

Query: 316 NKEIEGALSLYSEMLSK 332
              I+ A+ L+ E+L K
Sbjct: 721 LGSIDEAIELHDELLKK 737



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 7/149 (4%)

Query: 5   DYMLRM-----HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           DY  RM      P+   VC+   L   L KN + +    LF  +    + PD   Y  LI
Sbjct: 588 DYFARMADFNLQPNNVAVCT--ALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALI 645

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +   K         +  R+       D   +TSL+ GL   + + +A     ++   G  
Sbjct: 646 DGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIV 705

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           PD      L+      G    A+ L +E+
Sbjct: 706 PDEILCIRLLRKYYELGSIDEAIELHDEL 734


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 177/326 (54%), Gaps = 7/326 (2%)

Query: 11  HPS-PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           HP     V  FN+L     +N      + L + + + G  PD+ TYN L+N FCK+G + 
Sbjct: 10  HPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLF 69

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               ++G I      P+ +T+T+LI   C    + +A  ++ ++      PDV TYT ++
Sbjct: 70  TAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIM 129

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           NGLC++G    A ++F EM     E GVV  P+  +Y+T+ D L KEG V +A  L  +M
Sbjct: 130 NGLCKSGKVEEAKSVFREME----EVGVV--PNRFSYATLIDSLFKEGNVAEAFVLQGRM 183

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I  DVV YT+L+ G   A   N A+ +F  ++++ + PN VT++ +++  CK G +
Sbjct: 184 VVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDV 243

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           ++   LL+ M +  + P+  VY++++DG+   G +N A ++   M     + +VF YG L
Sbjct: 244 NKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTL 303

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIR 335
           I+GY K  +   AL L+ EM S+G+ 
Sbjct: 304 IDGYFKADQRGIALDLFKEMKSRGLE 329



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 165/329 (50%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L K+   +   S+F+ +  +G+ P+ ++Y  LI+   K G V+  FV+
Sbjct: 120 PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVL 179

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            GR++      D V +T+L+ GL        A  +F  L      P+  TY+ LI+G C+
Sbjct: 180 QGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCK 239

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L +EM   +        P+ I YS+I DG  K+G +++A ++  KM   NI
Sbjct: 240 LGDVNKGELLLQEMEEKH------IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNI 293

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V  Y +LI G+  A+    A  LF EM  +G++ N    +  +N L ++G+M+EA  
Sbjct: 294 LPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADE 353

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+  G+ PD   Y ++MDGF   G+ + A  +   M       DV +Y +LING  
Sbjct: 354 LFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLF 413

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  + E   S ++ M   G+ P   T+NT
Sbjct: 414 KLGKYESE-SFHTGMRQLGLAPDSATFNT 441



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 164/326 (50%), Gaps = 7/326 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+L   L K   Y++  S    +  +GL PD  T+N +IN +CK G +     +L 
Sbjct: 402 VVAYNVLINGLFKLGKYESE-SFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P+++T   L++ LCA   I +   L   +   G  P   T+  +++   ++ 
Sbjct: 461 EMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSR 520

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
              V L+  +++       G+  K D  TY+T+    C+ G + +A  +F  M  + I  
Sbjct: 521 RADVILHXHDQLV------GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILA 574

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D++TY +LI G+C ++   +A  +  +M+ +GV PNV T+N+++  L     + EA+ L+
Sbjct: 575 DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLV 634

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M + G+ P+A+ Y+ L+ G    G +    +L+  M + G +    +Y +LI+ + K 
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKG 694

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
           K++  A  L  EM  +GI P   TY+
Sbjct: 695 KKMSQAKELMQEMQVRGIPPNSSTYD 720



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 156/328 (47%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  L     K       L LFK + S GL  + +  +  +N   + GR+     +
Sbjct: 295 PNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADEL 354

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD V +TS++ G     +  +A  +  ++       DV  Y  LINGL +
Sbjct: 355 FKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G        +E  +   G   +   PD+ T++T+ +  CKEG +  A +L  +MK   +
Sbjct: 415 LGK-------YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGL 467

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +T   L++  C A +  +   L  +M+  G  P   T   +++   K+ + D    
Sbjct: 468 KPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILH 527

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + ++ +GV+ D S YNTL+  FC  G + RA  +F  M   G + D+ +Y  LI+GYC
Sbjct: 528 XHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYC 587

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  ++ A +++S+ML++G+ P V TYN
Sbjct: 588 ISSHLKKAFAVHSQMLTEGVSPNVETYN 615



 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 131/254 (51%), Gaps = 6/254 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F  LI G C    I  A  L   ++  G  PD+ TY TL+NG C+ G    A  L  E++
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
             N E      P+ ITY+T+ D  CK   ++ A  ++ +M  +++ PDVVTYT ++ G C
Sbjct: 80  LVNLE------PNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLC 133

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            +    EAK +F EM + GV PN  ++  +++ L K G + EA  L   M+  G+  D  
Sbjct: 134 KSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVV 193

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
           VY  LMDG    G  N A+++F  +     + +  +Y  LI+G+CK  ++     L  EM
Sbjct: 194 VYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEM 253

Query: 330 LSKGIRPTVVTYNT 343
             K I P V+ Y++
Sbjct: 254 EEKHIFPNVIVYSS 267



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 150/345 (43%), Gaps = 18/345 (5%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F   +R     P   +FN +     K  +    L L   + S GL P+  T NIL+   C
Sbjct: 423 FHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLC 482

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G +     +L  +L   F P   T  +++       R         +L   G K D+ 
Sbjct: 483 AAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLS 542

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLI+  CR G    A  +F++M       G     D ITY+ +  G C    + KA 
Sbjct: 543 TYNTLISTFCRLGMIRRATLVFKDM------MGKGILADIITYNALIHGYCISSHLKKAF 596

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +  +M  E ++P+V TY  L+ G   A    EA  L  +M ++G+ PN  T++++++  
Sbjct: 597 AVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGH 656

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G M E  +L   MI  G  P    YN L+  F    ++++AKEL   M+  G   + 
Sbjct: 657 GKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNS 716

Query: 304 FSYGILINGYCK-------NKEIE-----GALSLYSEMLSKGIRP 336
            +Y ILI G+ K       NK ++      A  L+ EM  KG  P
Sbjct: 717 STYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 160/361 (44%), Gaps = 40/361 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +  L   L K    +    +F+ L    L P+  TY+ LI+  CK+G V+ G ++L 
Sbjct: 192 VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQ 251

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P+ + ++S++ G   +  + EA  +  K+      P+VF Y TLI+G  +  
Sbjct: 252 EMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKAD 311

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
              +AL+LF+EM +   E       +     +  + L + G +++A ELF  M    + P
Sbjct: 312 QRGIALDLFKEMKSRGLE------ENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLP 365

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ----------------------------- 227
           D V YTS++ GF  A   ++A  +  EM ++                             
Sbjct: 366 DRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHT 425

Query: 228 -----GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
                G+ P+  TFN ++N  CK G +  A +LL  M   G++P++   N L+   C  G
Sbjct: 426 GMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAG 485

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            + +  +L   M   G      ++  +++   K++  +  L  + +++  G++  + TYN
Sbjct: 486 EIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYN 545

Query: 343 T 343
           T
Sbjct: 546 T 546



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 124/287 (43%), Gaps = 44/287 (15%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           HP+P    +   +    +K++  D +L    +L  +G+  DL TYN LI+ FC++G +  
Sbjct: 503 HPTP---TTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRR 559

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
             +V   ++      D +T+ +LI G C  S + +A A+ +++   G  P+V TY  L+ 
Sbjct: 560 ATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLG 619

Query: 131 GLCRTGHTIVALNLFEEM---------------ANGNGEFG-------VVCK-------P 161
           GL        A  L  +M                +G+G+ G       + C+       P
Sbjct: 620 GLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVP 679

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW------- 214
              TY+ +     K   + +AKEL  +M+   I P+  TY  LI G+   +         
Sbjct: 680 KTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSL 739

Query: 215 -----NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
                 EAK LF EM ++G  P   T   I   L K GK  +A R+L
Sbjct: 740 KRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADAQRIL 786



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 67/113 (59%)

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           ++ +V  FNV+++  C+NG++  A  LLE M   G  PD   YNTLM+GFC  G +  AK
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +L   +       +V +Y  LI+ YCK++ +E AL +Y EM  K + P VVTY
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTY 125



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 78/150 (52%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I   V  +  LI G+C   + + A  L   M  +G  P++VT+N +MN  CK G +  A 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L+  +  + + P+   Y TL+D +C +  +  A  ++  M     + DV +Y  ++NG 
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK+ ++E A S++ EM   G+ P   +Y T
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 165/366 (45%), Gaps = 50/366 (13%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI-- 78
           N L   L K + +  +  L +++  + + P + T+ ILIN  CK  R+     V  ++  
Sbjct: 156 NALLTGLGKAREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKG 215

Query: 79  ----LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
                +    PD + + +LI GLC   R  EA  L  K+R+  C P   T+  LING CR
Sbjct: 216 EKEETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCR 275

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G   VA  LF EM N   E      P+ IT +T+ DG+CK   +  A E F  M+ + +
Sbjct: 276 SGEIEVAHKLFNEMENAQIE------PNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGL 329

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT------------------- 235
             + VTYT  I  FC  N+ N+A     EM   G  P+ V                    
Sbjct: 330 KGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASS 389

Query: 236 ----------------FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
                           +NV+++E CK  K+D A   L  M   GV+PD+  YNTL+  F 
Sbjct: 390 VVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFS 449

Query: 280 LTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM--LSKGIRP 336
             G    A +    M E  G    VF+YG LI+ YC N  I+ A+ ++ EM  ++  + P
Sbjct: 450 KIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPP 509

Query: 337 TVVTYN 342
             V YN
Sbjct: 510 NTVIYN 515



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 156/345 (45%), Gaps = 35/345 (10%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D +  L  +     +FPD      LI+  C+ G  +  + +L  ++      DA    +L
Sbjct: 99  DEIAGLVSKFGKHNIFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNAL 158

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           + GL       +   L  K++    +P V T+  LIN LC+      AL +FE+M     
Sbjct: 159 LTGLGKAREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKE 218

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
           E  V   PD I Y+T+ DGLCK G  ++A  L  KM+ +   P   T+  LI G+C + +
Sbjct: 219 ETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGE 278

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR-------- 265
              A  LF EM +  ++PNV+T N +++ +CK+ ++  A     +M Q G++        
Sbjct: 279 IEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTV 338

Query: 266 ---------------------------PDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
                                      PDA VY TL+ G    GR++ A  +   ++  G
Sbjct: 339 FINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAG 398

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              D   Y +LI+ +CK  +++ A    +EM   G++P  VTYNT
Sbjct: 399 FCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNT 443



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 149/364 (40%), Gaps = 44/364 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P    +N L   L K    +  L L  ++ S    P   T+N LIN +C+ G +     +
Sbjct: 226 PDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKL 285

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  +   P+ +T  +L+ G+C  +RI  A   F  ++  G K +  TYT  IN  C 
Sbjct: 286 FNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCN 345

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             +   A+   +EM+         C PDA+ Y T+  GL + G +D A  +  K+K+   
Sbjct: 346 VNNMNKAMEFLDEMSKDG------CFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGF 399

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN----------------- 237
             D V Y  LI  FC  N  + A+    EM   GV+P+ VT+N                 
Sbjct: 400 CLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHK 459

Query: 238 -------------------VIMNELCKNGKMDEASRLLELMIQIG--VRPDASVYNTLMD 276
                               +++  C N  +DEA ++ + M  +   V P+  +YN L+D
Sbjct: 460 FMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILID 519

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
             C   +VN A  L   M+  G M +  +Y  +         ++ A  L   M+ +   P
Sbjct: 520 SLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNP 579

Query: 337 TVVT 340
             +T
Sbjct: 580 DYIT 583



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 145/298 (48%), Gaps = 9/298 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N L   + K+    T +  F+ +   GL  +  TY + IN FC +  ++     
Sbjct: 296 PNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEF 355

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +    PDAV + +LI GL    R+ +A+++ +KL+  G   D   Y  LI+  C+
Sbjct: 356 LDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCK 415

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM-KDEN 193
                 A     EM     E   V KPD++TY+T+     K G    A +   KM ++E 
Sbjct: 416 KNKLDRAQEWLNEM-----ELAGV-KPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEG 469

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD--QGVQPNVVTFNVIMNELCKNGKMDE 251
           ++P V TY +LI  +C  N+ +EA  +F EM +    V PN V +N++++ LCK  +++ 
Sbjct: 470 LSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNF 529

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           A  LL+ M   GV P+ + YN++         +++A +L   M    C  D  +  IL
Sbjct: 530 ALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEIL 587



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 137/302 (45%), Gaps = 49/302 (16%)

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
           A +   L++ L     + EA A F+ L +     +V     +IN L ++G    A+N+ +
Sbjct: 6   AQSSVHLLRRLGRIGMVDEALAAFSTLDSHAKNTNV--RNEIINLLLKSGRVDNAMNVLD 63

Query: 147 EMANGNGEFGVVCKPDAITYSTI--TDGLCKEGFV--DKAKELFLKMKDENINPDVVTYT 202
           EM     EF    K   I ++ +   DGL  EG V  D+   L  K    NI PD +  T
Sbjct: 64  EMLLPESEFRPNDKTAGIVFNNLLKIDGL--EGRVKEDEIAGLVSKFGKHNIFPDTIALT 121

Query: 203 SLIRGFCYAND----WN-------------EAKC------------------LFIEMMDQ 227
            LI   C + +    WN              A C                  L  +M D 
Sbjct: 122 QLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKDM 181

Query: 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELM------IQIGVRPDASVYNTLMDGFCLT 281
            +QP V+TF +++N LCK  ++D+A  + E M       ++ V PD  +YNTL+DG C  
Sbjct: 182 NIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKV 241

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           GR   A  L   M S+ C     ++  LINGYC++ EIE A  L++EM +  I P V+T 
Sbjct: 242 GRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITL 301

Query: 342 NT 343
           NT
Sbjct: 302 NT 303



 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP    +NIL   L K    +  LSL   +   G+ P+  TYN +         +   F 
Sbjct: 508 PPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFK 567

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--GC 118
           ++ R++     PD +T   L + L A   I       TKL+ F  GC
Sbjct: 568 LMDRMVEQACNPDYITMEILTEWLSAVGEI-------TKLKKFTQGC 607


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 164/336 (48%), Gaps = 8/336 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           LR+HP+     +FN+L             LS    +   GL PD+ TYN L+   C+ G 
Sbjct: 204 LRLHPN---HYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGM 260

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L R+ +    P   T+ +L+        I +A  +   + AFG +PD++TY  
Sbjct: 261 LGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNV 320

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L  GLC+ G    A  L +EM     E   +  PD +TY+T+ D   K      A  L  
Sbjct: 321 LAAGLCQAGKVDEAFKLKDEM-----EHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLE 375

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +M+D+ +   +VT+  +++G C      EA      M ++G+ P+V+T+N +++  CK  
Sbjct: 376 EMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKAR 435

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            + +A  L++ M++ G++ D    NTL+   C   R   A+EL  S    G + D  SYG
Sbjct: 436 NVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYG 495

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            ++  Y K  + E AL L+ EM  + + P++ TYNT
Sbjct: 496 TVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNT 531



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 171/336 (50%), Gaps = 17/336 (5%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSL--FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           P + + N +   LA++       SL  F+ L ++ L P+ YT+N+L++  C  G ++   
Sbjct: 171 PSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADAL 230

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
             L  +     +PD VT+ +L+K  C +  + EA  L  +++  G  P   TY TL++  
Sbjct: 231 STLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAY 290

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
            R G    A N+ E M      FG   +PD  TY+ +  GLC+ G VD+A     K+KDE
Sbjct: 291 ARLGWIKQATNVVEAMT----AFGF--EPDLWTYNVLAAGLCQAGKVDEA----FKLKDE 340

Query: 193 N-----INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
                 ++PDVVTY +L+         ++A  L  EM D+GV+ ++VT N+++  LC+ G
Sbjct: 341 MEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREG 400

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           +++EA   L++M + G+ PD   YNTL+D +C    V +A  L   M  +G   D F+  
Sbjct: 401 QLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLN 460

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            L+   CK K  E A  L      +G  P  V+Y T
Sbjct: 461 TLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGT 496



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 169/342 (49%), Gaps = 6/342 (1%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D M  +    P V ++N L     K +     L+L + +   G+   L T+NI++ 
Sbjct: 335 FKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVK 394

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ G++      L  +      PD +T+ +LI   C    + +A  L  ++   G K 
Sbjct: 395 GLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKM 454

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D FT  TL+  LC+      A    EE+     + G V  PD ++Y T+     KE   +
Sbjct: 455 DTFTLNTLLYNLCKEKRYEEA----EELLRSPPQRGFV--PDEVSYGTVMAAYFKENKPE 508

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  L+ +M    + P + TY +LI+G C      EA     E+M +G+ P+  T+N+I+
Sbjct: 509 PALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIII 568

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +  CK G +++A +    M++   +PD    NTLM+G CL G++ +A +LF S    G  
Sbjct: 569 HAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKK 628

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            DV +Y  LI   CK+ +++ AL  +++M ++G++P   TYN
Sbjct: 629 VDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYN 670



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 154/317 (48%), Gaps = 6/317 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + + NI+   L +    +  L   K +   GL PD+ TYN LI+ +CK   V+  FV++ 
Sbjct: 386 LVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMD 445

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++RS    D  T  +L+  LC E R  EA  L       G  PD  +Y T++    +  
Sbjct: 446 EMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKEN 505

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL L++EM+           P   TY+T+  GLC  G + +A +   ++  + + P
Sbjct: 506 KPEPALYLWDEMSKRK------LTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVP 559

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D  TY  +I  +C   D  +A     +M++   +P+VVT N +MN LC +GK+++A +L 
Sbjct: 560 DDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLF 619

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E   + G + D   YNTL+   C  G V+ A   F  ME+ G   D F+Y ++++   + 
Sbjct: 620 ESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEA 679

Query: 317 KEIEGALSLYSEMLSKG 333
              E A ++  ++   G
Sbjct: 680 GRSEEAQNMLHKLDESG 696



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 163/365 (44%), Gaps = 42/365 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L    A+        ++ + + + G  PDL+TYN+L    C+ G+V   F +
Sbjct: 278 PTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKL 337

Query: 75  LGRILR-SCFTPDAVTFTSLI-----------------------------------KGLC 98
              +   S  +PD VT+ +L+                                   KGLC
Sbjct: 338 KDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLC 397

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
            E ++ EA      +   G  PDV TY TLI+  C+  +   A  L +EM          
Sbjct: 398 REGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSG------ 451

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
            K D  T +T+   LCKE   ++A+EL          PD V+Y +++  +   N    A 
Sbjct: 452 LKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPAL 511

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            L+ EM  + + P++ T+N ++  LC  GK+ EA   L  +++ G+ PD + YN ++  +
Sbjct: 512 YLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAY 571

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G + +A +    M  N    DV +   L+NG C + ++E A+ L+     KG +  V
Sbjct: 572 CKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDV 631

Query: 339 VTYNT 343
           +TYNT
Sbjct: 632 ITYNT 636



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 127/300 (42%), Gaps = 42/300 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  +     K    +  L L+  ++   L P +YTYN LI   C +G+++     
Sbjct: 489 PDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDK 548

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++    PD  T+  +I   C E  + +A     K+     KPDV T  TL+NGLC 
Sbjct: 549 LNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCL 608

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ LFE  A          K D ITY+T+   LCK+G VD A   F  M+   +
Sbjct: 609 HGKLEKAIKLFESWAEKGK------KVDVITYNTLIQALCKDGDVDTALHFFADMEARGL 662

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLF---------------------IEMMDQGVQPNV 233
            PD  TY  ++     A    EA+ +                       E +  G  P V
Sbjct: 663 QPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEV 722

Query: 234 VT---------------FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            +               +N  + ELC  G++ EA  +L+ M+Q G+  D+S Y TLM+G 
Sbjct: 723 KSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGL 782


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 172/359 (47%), Gaps = 40/359 (11%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
            D ML    SP  V ++N +   L K +  D  + +   +   G+ PD  TYN +++ FC
Sbjct: 104 LDKMLDQRISPN-VVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G+     V L ++      PD VT+ SL+  LC   R  EA  +F  +   G KPD+ 
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMA-NG----NGEFGV-VC------------------ 159
           TY TL+ G    G  +    L + M  NG    +  F + VC                  
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 282

Query: 160 -----KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
                 P+A+TY T+ D LCK G V+ A   F +M DE + PD + Y SLI   C  + W
Sbjct: 283 RQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKW 342

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            +A+ LF+EM+D+G+  + + FN I++  CK G++ E+ +L +LM++IGV+PD       
Sbjct: 343 EKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD------- 395

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
                  GR + AK+LFV+  SNG + + ++Y ++         +E    L+  M   G
Sbjct: 396 ---IITLGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 451



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 171/328 (52%), Gaps = 15/328 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S++ +     K    D +L   +R++     P++ TYN +I   CK   V     
Sbjct: 85  PPDVVSYSTVINGFFKEGDLDKMLD--QRIS-----PNVVTYNSIIAALCKAQTVDKAME 137

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL  +++S   PD +T+ S++ G C+  +  EA     K+R+ G +PDV TY +L++ LC
Sbjct: 138 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLC 197

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A  +F+ M           KPD  TY T+  G   +G + +   L   M    
Sbjct: 198 KNGRCTEARKIFDSMTKRG------LKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNG 251

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I+P+   ++ L+  +       EA  +F +M  QG+ PN VT+  +++ LCK+G++++A 
Sbjct: 252 IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAM 311

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG-CMRDVFSYGILING 312
              E MI  G+RPD+ VYN+L+   C+  +  +A+ELF+ M   G C+  +F +  +I+ 
Sbjct: 312 LYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIF-FNSIIDS 370

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +CK   +  +  L+  M+  G++P ++T
Sbjct: 371 HCKEGRVIESGKLFDLMVRIGVKPDIIT 398



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 145/272 (53%), Gaps = 16/272 (5%)

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLING 131
           V   +LR    PD  ++  L+ GLC E+R  EA  L   +   G  C PDV +Y+T+ING
Sbjct: 39  VFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVING 97

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
             + G         ++M +          P+ +TY++I   LCK   VDKA E+   M  
Sbjct: 98  FFKEGD-------LDKMLDQR------ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVK 144

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             + PD +TY S++ GFC +    EA     +M   GV+P+VVT+N +M+ LCKNG+  E
Sbjct: 145 SGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTE 204

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A ++ + M + G++PD + Y TL+ G+   G +     L   M  NG   + + + IL+ 
Sbjct: 205 ARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVC 264

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            Y K +++E A+ ++S+M  +G+ P  VTY T
Sbjct: 265 AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 135/310 (43%), Gaps = 31/310 (10%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F   +R     P V ++N L   L KN        +F  +   GL PD+ TY  L+  +
Sbjct: 172 VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGY 231

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +     +L  ++R+   P+   F+ L+     + ++ EA  +F+K+R  G  P+ 
Sbjct: 232 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNA 291

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY T+I+ LC++G    A+  FE+M +         +PD+I Y+++   LC     +KA
Sbjct: 292 VTYGTVIDVLCKSGRVEDAMLYFEQMIDEG------LRPDSIVYNSLIHSLCIFDKWEKA 345

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDW-------------------------NEA 217
           +ELFL+M D  I    + + S+I   C                              +EA
Sbjct: 346 EELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRNDEA 405

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           K LF+     G+ PN  T+ ++   +   G ++E  +L   M   G   D+ + N ++  
Sbjct: 406 KDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRE 465

Query: 278 FCLTGRVNRA 287
               G + RA
Sbjct: 466 LLQRGEITRA 475



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 21/276 (7%)

Query: 3   IFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + D M+R  +HP+      F+IL    AK +  +  + +F ++   GL P+  TY  +I+
Sbjct: 243 LLDLMVRNGIHPNH---YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVID 299

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK GRV    +   +++     PD++ + SLI  LC   +  +A  LF ++   G   
Sbjct: 300 VLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICL 359

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
               + ++I+  C+ G  I +  LF+ M        +  KPD IT           G  D
Sbjct: 360 STIFFNSIIDSHCKEGRVIESGKLFDLMVR------IGVKPDIITL----------GRND 403

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +AK+LF+      + P+  TY  +           E   LF+ M D G   +    N I+
Sbjct: 404 EAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 463

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
            EL + G++  A   L ++ +     +AS  +  +D
Sbjct: 464 RELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 499


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 166/336 (49%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K K++  V      +   G       +NIL++ FCK G
Sbjct: 95  LTREHKLRVPFDTCKKVLEHLMKLKYFKLVWGFXXXIXXXGXXXXXXFFNILMHRFCKDG 154

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 155 DIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYS 214

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+      A  LF+EM            P+ +T++T+ DG CK G VD A E++
Sbjct: 215 VLINGLCKESKMDDANELFDEMLVKG------LXPNGVTFTTLIDGHCKNGRVDLAMEIY 268

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ PD++TY +LI G C   D  +A  L  EM  +G++ + +T+  +++  CK 
Sbjct: 269 KQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKE 328

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +R D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 329 GDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTY 388

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++     L  +M   G  P+VVTYN
Sbjct: 389 TMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYN 424



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 164/293 (55%), Gaps = 6/293 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FNIL     K+       S+F  +   GL P + +YN L+N + ++G ++ GF +   +L
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            S   PD  T++ LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C+ G   
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVD 262

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
           +A+ ++++M + +        PD ITY+T+  GLCK+G + +A +L  +M  + +  D +
Sbjct: 263 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKI 316

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TYT+LI G C   D + A      M+ + ++ + V +  +++ LC+ G+  +A ++L  M
Sbjct: 317 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 376

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           + +G++PD   Y  +++ FC  G V +  +L   M+ NG    V +Y +L+NG
Sbjct: 377 LSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 141/263 (53%), Gaps = 6/263 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N L     +    +    L   + + G+ PD+YTY++LIN  CK  ++     +
Sbjct: 173 PSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 232

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     P+ VTFT+LI G C   R+  A  ++ ++ +    PD+ TY TLI GLC+
Sbjct: 233 FDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 292

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L +EM+          K D ITY+T+ DG CKEG +D A E   +M  ENI
Sbjct: 293 KGDLKQAHDLIDEMSMKG------LKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENI 346

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V YT+LI G C      +A+ +  EM+  G++P+  T+ +I+NE CK G + + S+
Sbjct: 347 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSK 406

Query: 255 LLELMIQIGVRPDASVYNTLMDG 277
           LL+ M + G  P    YN LM+G
Sbjct: 407 LLKDMQRNGHAPSVVTYNVLMNG 429



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 99/170 (58%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK+G +  A+ +F  +    + P VV+Y +L+ G+    D NE   L   M+  GVQP+V
Sbjct: 151 CKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDV 210

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            T++V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+ A E++  
Sbjct: 211 YTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 270

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S   + D+ +Y  LI G CK  +++ A  L  EM  KG++   +TY T
Sbjct: 271 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTT 320


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 170/324 (52%), Gaps = 7/324 (2%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N L   L K    +  + LF+         D  T+NILI   C +G+      +LG +  
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSG 234

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF-GCKPDVFTYTTLINGLCRTGHTI 139
               PD VT+ +LIKG C  + + +A  +F  +++  GC PDV TYT++I+G C+ G   
Sbjct: 235 FGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQ 294

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L ++M       G+   P  +T++ + DG  K G +  A+E+  KM      PDVV
Sbjct: 295 EASVLLDDML----RLGIY--PTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVV 348

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           T+TSLI G+C     N+   L+ EM  +G+ PN  T+++++N LCK  ++ +A  LL  +
Sbjct: 349 TFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQL 408

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
               + P   +YN ++DGFC  G+VN A  +   ME   C  D  ++ ILI G+C    +
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A+S++ +M++ G  P  +T ++
Sbjct: 469 FEAVSIFHKMVAIGCSPDKITVSS 492



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 163/361 (45%), Gaps = 42/361 (11%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR-------- 67
           P  SF ++   L  N H       F R   + +    +TYN+L    CK G         
Sbjct: 69  PFISFEVVKK-LDNNPHIGFRFWEFSRFK-LNIRHSFWTYNLLTRSLCKAGMHDLAGQMF 126

Query: 68  -------VSPGFVVLGRILRS--------CFTPD----------AVTFTSLIKGLCAESR 102
                  +SP   +LG ++ S        C T             +   SL+  L    R
Sbjct: 127 ECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQSYEVEGCCMVVNSLLNTLVKLDR 186

Query: 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
           + +A  LF +   F    D  T+  LI GLC  G    A+ L   M+      G  C PD
Sbjct: 187 VEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMS------GFGCLPD 240

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDEN-INPDVVTYTSLIRGFCYANDWNEAKCLF 221
            +TY+T+  G CK   + KA E+F  +K  +  +PDVVTYTS+I G+C A    EA  L 
Sbjct: 241 IVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLL 300

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +M+  G+ P  VTFNV+++   K G+M  A  +   MI  G  PD   + +L+DG+C  
Sbjct: 301 DDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRV 360

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G+VN+   L+  M + G   + F+Y ILIN  CK   +  A  L  ++ SK I P    Y
Sbjct: 361 GQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMY 420

Query: 342 N 342
           N
Sbjct: 421 N 421



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 139/277 (50%), Gaps = 7/277 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P + ++N L     K+        +F  + +S G  PD+ TY  +I+ +CK G++    V
Sbjct: 239 PDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASV 298

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +LR    P  VTF  L+ G      +  A  +  K+ +FGC PDV T+T+LI+G C
Sbjct: 299 LLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYC 358

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R G       L+EEM N  G F     P+A TYS + + LCKE  + KA+EL  ++  ++
Sbjct: 359 RVGQVNQGFRLWEEM-NARGMF-----PNAFTYSILINALCKENRLLKARELLGQLASKD 412

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I P    Y  +I GFC A   NEA  +  EM  +  +P+ +TF +++   C  G+M EA 
Sbjct: 413 IIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAV 472

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            +   M+ IG  PD    ++L+      G    A  L
Sbjct: 473 SIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 144/294 (48%), Gaps = 7/294 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FNIL   L      +  + L   ++  G  PD+ TYN LI  FCK   +     +   +
Sbjct: 208 TFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDV 267

Query: 79  LRSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
             S   +PD VT+TS+I G C   ++ EA+ L   +   G  P   T+  L++G  + G 
Sbjct: 268 KSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGE 327

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A    EE+      FG  C PD +T++++ DG C+ G V++   L+ +M    + P+
Sbjct: 328 MHTA----EEIRGKMISFG--CFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPN 381

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
             TY+ LI   C  N   +A+ L  ++  + + P    +N +++  CK GK++EA  ++E
Sbjct: 382 AFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVE 441

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
            M +   +PD   +  L+ G C+ GR+  A  +F  M + GC  D  +   L++
Sbjct: 442 EMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLS 495



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 127/257 (49%), Gaps = 8/257 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD +       P V ++  +     K         L   +  +G++P   T+N+L++ +
Sbjct: 263 MFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGY 322

Query: 63  CKMGRVSPGFVVLGRILR-SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            K G +     + G+++   CF PD VTFTSLI G C   ++ +   L+ ++ A G  P+
Sbjct: 323 AKAGEMHTAEEIRGKMISFGCF-PDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPN 381

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            FTY+ LIN LC+    + A  L  ++A+ +        P    Y+ + DG CK G V++
Sbjct: 382 AFTYSILINALCKENRLLKARELLGQLASKD------IIPQPFMYNPVIDGFCKAGKVNE 435

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A  +  +M+ +   PD +T+T LI G C      EA  +F +M+  G  P+ +T + +++
Sbjct: 436 AIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLS 495

Query: 242 ELCKNGKMDEASRLLEL 258
            L K G   EA  L ++
Sbjct: 496 CLLKAGMAKEAYHLNQI 512



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 34/185 (18%)

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN-------VVTF--------- 236
           NI     TY  L R  C A   + A  +F  M   G+ PN       V +F         
Sbjct: 98  NIRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCA 157

Query: 237 -----------------NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
                            N ++N L K  ++++A +L E  ++     D   +N L+ G C
Sbjct: 158 TALLLQSYEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLC 217

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML-SKGIRPTV 338
             G+  +A EL   M   GC+ D+ +Y  LI G+CK+ E++ A  ++ ++  S G  P V
Sbjct: 218 GVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDV 277

Query: 339 VTYNT 343
           VTY +
Sbjct: 278 VTYTS 282


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 166/321 (51%), Gaps = 7/321 (2%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           ++ GCL + K       L++ + S G  PD++TY+IL++  CK+GR      +L  +   
Sbjct: 319 VIRGCLTEGK-LARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEK 377

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
              P+ VT+++L+   C      +A A+  ++ A G   +   Y  +I  LC+ G    A
Sbjct: 378 GCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQA 437

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
             L +EM +        CKPD  TY+T+   LC    +++A+ +F  + +E +  + +TY
Sbjct: 438 TRLVQEMKSQG------CKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITY 491

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            +LI        W E   L  EM+  G Q +V+++N ++  LCK G +D +  LLE M+ 
Sbjct: 492 NTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVT 551

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G++P+   YN L++  C  G+V  A EL   M + G   D+ +Y  LING CK      
Sbjct: 552 KGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHA 611

Query: 322 ALSLYSEMLSKGIRPTVVTYN 342
           AL+L  ++ ++ + P +VTYN
Sbjct: 612 ALNLLEKLPNENVHPDIVTYN 632



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 172/372 (46%), Gaps = 37/372 (9%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R     P   S+N++   LA+   +   L L++R+    + P  +T+ +     
Sbjct: 128 LLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARAL 187

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++GR      +L  + R    PDAV + ++I  L A+  + EAA L  ++   GC  DV
Sbjct: 188 CRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADV 247

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK------- 175
            T+  L+ GLC  G    A  L + M          C P  +TY  +  GLC+       
Sbjct: 248 NTFNDLVLGLCGLGRVREAARLVDRMMTQG------CMPSVVTYGFLLQGLCRTRQADEA 301

Query: 176 ------------------------EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                                   EG + +A EL+  M  +   PDV TY+ L+ G C  
Sbjct: 302 CAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKL 361

Query: 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
             +  A  +  EM ++G  PN+VT++ +++  C+NG  D+A  +L+ M+  G   ++  Y
Sbjct: 362 GRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGY 421

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N ++   C  G++++A  L   M+S GC  D+ +Y  +I   C N  +E A  ++  ++ 
Sbjct: 422 NGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIE 481

Query: 332 KGIRPTVVTYNT 343
           +G+    +TYNT
Sbjct: 482 EGVVANGITYNT 493



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 173/328 (52%), Gaps = 6/328 (1%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V +++IL   L K   + + + +   +   G  P++ TY+ L++ FC+ G       
Sbjct: 345 PPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARA 404

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L ++L   F+ ++  +  +I  LC + ++ +A  L  ++++ GCKPD+ TY T+I  LC
Sbjct: 405 MLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLC 464

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                  A ++F  +     E GVV   + ITY+T+   L + G   +   L  +M    
Sbjct: 465 NNDLMEEAEHIFRNLI----EEGVVA--NGITYNTLIHALLRNGRWQEGLRLASEMLLHG 518

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              DV++Y  LI+  C   + + +  L  EM+ +G++PN  ++N+++NELCK GK+ +A 
Sbjct: 519 CQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDAL 578

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + M+  G+ PD   YNTL++G C  G  + A  L   + +     D+ +Y ILI+ +
Sbjct: 579 ELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWH 638

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           CK + ++ A  L  + +S GI P   T+
Sbjct: 639 CKVRLLDDAAMLLDKAISGGIVPNERTW 666



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 175/370 (47%), Gaps = 58/370 (15%)

Query: 22  ILFGCLAK-NKHYDTVLSL------------FKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           +L GC A  N   D VL L              R+ + G  P + TY  L+   C+  + 
Sbjct: 239 LLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQA 298

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +LGR+       + V   ++I+G   E ++  A  L+  + + GC PDV TY+ L
Sbjct: 299 DEACAMLGRLPEV----NVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSIL 354

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD----------------- 171
           ++GLC+ G    A+ + +EM     E G  C P+ +TYST+                   
Sbjct: 355 MHGLCKLGRFGSAVRMLDEME----EKG--CAPNIVTYSTLLHSFCRNGMWDDARAMLDQ 408

Query: 172 ------------------GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                              LCK+G +D+A  L  +MK +   PD+ TY ++I   C  + 
Sbjct: 409 MLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDL 468

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
             EA+ +F  ++++GV  N +T+N +++ L +NG+  E  RL   M+  G + D   YN 
Sbjct: 469 MEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNG 528

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+   C  G V+R+  L   M + G   + FSY +LIN  CK  ++  AL L  EML++G
Sbjct: 529 LIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 588

Query: 334 IRPTVVTYNT 343
           + P +VTYNT
Sbjct: 589 LTPDIVTYNT 598



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 9/203 (4%)

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           AL+L ++M      F V   P   +Y+ +   L +      A  L+ +M  + + P   T
Sbjct: 125 ALHLLDQMPR---RFAV--SPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFT 179

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           +    R  C      +A  L   M   G  P+ V +  +++ L   G + EA+ LL+ M+
Sbjct: 180 FGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEML 239

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
            +G   D + +N L+ G C  GRV  A  L   M + GCM  V +YG L+ G C+ ++ +
Sbjct: 240 LMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQAD 299

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A +    ML +     VV  NT
Sbjct: 300 EACA----MLGRLPEVNVVMLNT 318



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 10  MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           +H     V S+N L   L K  + D  ++L + + + G+ P+ ++YN+LIN  CK G+V 
Sbjct: 516 LHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVR 575

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               +   +L    TPD VT+ +LI GLC       A  L  KL      PD+ TY  LI
Sbjct: 576 DALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILI 635

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           +  C+      A  L ++  +G    G+V  P+  T+  +     ++
Sbjct: 636 SWHCKVRLLDDAAMLLDKAISG----GIV--PNERTWGMMVQNFVRQ 676



 Score = 43.9 bits (102), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 46/92 (50%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K       L+L ++L +  + PD+ TYNILI+  CK+  +    ++
Sbjct: 591 PDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAML 650

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           L + +     P+  T+  +++    ++  +E 
Sbjct: 651 LDKAISGGIVPNERTWGMMVQNFVRQTVNLEG 682


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 169/343 (49%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +   +  M  SP  V    ++ GC  KN   +     F ++  +GL  + YT+ +LIN
Sbjct: 182 FQLLGLLQDMGLSPNVVIYTTLIDGC-CKNGDIERARLFFDKMGEMGLVANQYTFTVLIN 240

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              K G    GF +  ++  +   P+  T+  L+   C E +I  A  LF ++R  G + 
Sbjct: 241 GLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEA 300

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +V TY TLI G+CR      A  L ++M            P+ ITY+T+  G C  G +D
Sbjct: 301 NVVTYNTLIGGMCREERVWEAEKLVDQMKKA------AVSPNLITYNTLIGGFCDVGNLD 354

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           KA  L  ++K   ++P +VTY  LI G+  A +W     L  EM  +G+ P+ VT  V++
Sbjct: 355 KASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLI 414

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           +   +  +M++A ++   M + G+ PD  VY  L+ G C+ G +  + +LF SM      
Sbjct: 415 DAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVE 474

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                Y  +I+GYCK      AL L  EM +KG+ P V +Y++
Sbjct: 475 PSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSS 517



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 164/324 (50%), Gaps = 6/324 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +F +L   L K         LF+++   GLFP+LYTYN L+N +C  G++   F +   +
Sbjct: 234 TFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEM 293

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                  + VT+ +LI G+C E R+ EA  L  +++     P++ TY TLI G C  G+ 
Sbjct: 294 RERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNL 353

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A +L +++ + NG       P  +TY+ + +G  K G      +L  +M+   I+P  
Sbjct: 354 DKASSLLDQLKS-NG-----LSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSK 407

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VT T LI  +    +  +A  ++  M   G+ P+V  + V+++ LC  G M E+S+L   
Sbjct: 408 VTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRS 467

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M ++ V P   +YNT++ G+C      RA  L   ME+ G + +V SY  +I   CK+ +
Sbjct: 468 MGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGK 527

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
            E A  L  +M+   ++P+    N
Sbjct: 528 WEEAEVLLDKMIELQLKPSASILN 551



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 167/327 (51%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V SF I+     +N + D    L   L  +GL P++  Y  LI+  CK G +    +   
Sbjct: 162 VYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFD 221

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           ++       +  TFT LI GL  +    +   LF K++  G  P+++TY  L+N  C  G
Sbjct: 222 KMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEG 281

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A +LF+EM     E GV  + + +TY+T+  G+C+E  V +A++L  +MK   ++P
Sbjct: 282 KICRAFDLFDEMR----ERGV--EANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSP 335

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           +++TY +LI GFC   + ++A  L  ++   G+ P++VT+N+++    K G     + L 
Sbjct: 336 NLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLA 395

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M   G+ P       L+D +     + +A +++ SME  G + DV+ YG+LI+G C  
Sbjct: 396 REMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMK 455

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++ +  L+  M    + P+ V YNT
Sbjct: 456 GNMKESSKLFRSMGEMHVEPSDVIYNT 482



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 162/330 (49%), Gaps = 7/330 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           +PS      +  +     K++  D  L  F  +   GL      +N L+    +      
Sbjct: 87  NPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEK 146

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            ++     L+     D  +F  +IKG C    + ++  L   L+  G  P+V  YTTLI+
Sbjct: 147 AWLFFNE-LKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLID 205

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G C+ G    A   F++M    GE G+V   +  T++ + +GL K+G      +LF KMK
Sbjct: 206 GCCKNGDIERARLFFDKM----GEMGLVA--NQYTFTVLINGLFKKGLKKDGFDLFEKMK 259

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
              + P++ TY  L+  +C       A  LF EM ++GV+ NVVT+N ++  +C+  ++ 
Sbjct: 260 INGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVW 319

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA +L++ M +  V P+   YNTL+ GFC  G +++A  L   ++SNG    + +Y ILI
Sbjct: 320 EAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILI 379

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            GY K    +G   L  EM  +GI P+ VT
Sbjct: 380 EGYSKAGNWKGVADLAREMEGRGISPSKVT 409



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 136/274 (49%), Gaps = 7/274 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD M R       V ++N L G + + +       L  ++    + P+L TYN LI 
Sbjct: 287 FDLFDEM-RERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIG 345

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FC +G +     +L ++  +  +P  VT+  LI+G          A L  ++   G  P
Sbjct: 346 GFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISP 405

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
              T T LI+   R      A  ++  M     +FG+V  PD   Y  +  GLC +G + 
Sbjct: 406 SKVTCTVLIDAYVRLQEMEKAFQIYSSME----KFGLV--PDVYVYGVLIHGLCMKGNMK 459

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           ++ +LF  M + ++ P  V Y ++I G+C  ++   A  L  EM  +G+ PNV +++ I+
Sbjct: 460 ESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSII 519

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
             LCK+GK +EA  LL+ MI++ ++P AS+ N +
Sbjct: 520 GVLCKDGKWEEAEVLLDKMIELQLKPSASILNMI 553



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 127/259 (49%), Gaps = 11/259 (4%)

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGC--KPDVFTYTTLINGLCRTGHTIVALNL 144
           A+ + S+I        + +A   F ++   G   +P++F   +L+  L R+       N 
Sbjct: 93  ALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFN--SLLGSLVRS-------NC 143

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
           FE+      E     K D  ++  +  G C+ G +DK+ +L   ++D  ++P+VV YT+L
Sbjct: 144 FEKAWLFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTL 203

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I G C   D   A+  F +M + G+  N  TF V++N L K G   +   L E M   G+
Sbjct: 204 IDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGL 263

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            P+   YN LM+ +C  G++ RA +LF  M   G   +V +Y  LI G C+ + +  A  
Sbjct: 264 FPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEK 323

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           L  +M    + P ++TYNT
Sbjct: 324 LVDQMKKAAVSPNLITYNT 342



 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M  MH  P  V    ++ G   ++  Y   L L + + + GL P++ +Y+ +I   
Sbjct: 464 LFRSMGEMHVEPSDVIYNTMIHGYCKEDNSY-RALRLLREMEAKGLVPNVASYSSIIGVL 522

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           CK G+     V+L +++     P A     + K 
Sbjct: 523 CKDGKWEEAEVLLDKMIELQLKPSASILNMISKA 556


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 165/314 (52%), Gaps = 6/314 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPS 170

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            V+F +L+ G      + E   L + ++A G +PDV+T++ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFD 230

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           EM B     G+V  P+ +T++T+ DG CK G VD A E++ +M  +++ PD++TY +LI 
Sbjct: 231 EMLBN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIY 284

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           G C   D  +   L  EM  +G++P+ +T+  +++  CK G ++ A    + MI+  +R 
Sbjct: 285 GLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y  L+ G C  GR   A+++   M S G   ++ +Y ++IN +CK  ++     L 
Sbjct: 345 DDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 327 SEMLSKGIRPTVVT 340
            EM   G  P  VT
Sbjct: 405 KEMQRXGYXPNXVT 418



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/253 (35%), Positives = 135/253 (53%), Gaps = 6/253 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V SFN L     K    D    L   + + G+ PD+YT+++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANEL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L +   P+ VTFT+LI G C   R+  A  ++ ++ +    PD+ TY TLI GLC+
Sbjct: 229 FDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCK 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G      +L +EM+          KPD ITY+T+ DG CKEG ++ A E   +M  ENI
Sbjct: 289 KGDLKQXXDLIDEMSMKG------LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENI 342

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D   YT+LI G C      +A+ +  EM+  G++P + T+ +I+NE CK G +   S+
Sbjct: 343 RLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSK 402

Query: 255 LLELMIQIGVRPD 267
           LL+ M + G  P+
Sbjct: 403 LLKEMQRXGYXPN 415



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 149/285 (52%), Gaps = 6/285 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFR 192

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T + LI GLC ES++ +A  LF ++   G  P+  T+TTLI+G C
Sbjct: 193 LKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHC 252

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++ +M + +        PD ITY+T+  GLCK+G + +  +L  +M  + 
Sbjct: 253 KNGRVDLAMEIYRQMLSQS------LLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKG 306

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD +TYT+LI G C   D   A      M+ + ++ +   +  +++ LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAE 366

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           ++L  M+ +G++P+   Y  +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXG 411



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 131/253 (51%), Gaps = 8/253 (3%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM- 148
           F  L+   C E  I  A ++F  +  +G +P V ++ TL+NG  + G       L   M 
Sbjct: 139 FNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
           A+G        +PD  T+S + +GLCKE  +D A ELF +M B  + P+ VT+T+LI G 
Sbjct: 199 ASG-------VQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGH 251

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C     + A  ++ +M+ Q + P+++T+N ++  LCK G + +   L++ M   G++PD 
Sbjct: 252 CKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDK 311

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y TL+DG C  G +  A E    M       D  +Y  LI+G C+      A  +  E
Sbjct: 312 ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLRE 371

Query: 329 MLSKGIRPTVVTY 341
           MLS G++P + TY
Sbjct: 372 MLSVGLKPEIGTY 384



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 100/178 (56%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +    CKEG +  A+ +F  +    + P VV++ +L+ G+    D +E   L   M 
Sbjct: 139 FNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             GVQP+V T +V++N LCK  KMD+A+ L + M+  G+ P+   + TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S   + D+ +Y  LI G CK  +++    L  EM  KG++P  +TY T
Sbjct: 259 LAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTT 316



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 90/184 (48%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D   +S +     + GF+  A E +   K+        T   +I        +     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWG 122

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + E ++ G   ++  FN++M+  CK G++  A  + + + + G+RP    +NTLM+G+ 
Sbjct: 123 FYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYI 182

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G ++    L   M+++G   DV+++ +LING CK  +++ A  L+ EML  G+ P  V
Sbjct: 183 KIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGV 242

Query: 340 TYNT 343
           T+ T
Sbjct: 243 TFTT 246


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 177/326 (54%), Gaps = 7/326 (2%)

Query: 11  HPS-PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69
           HP     V  FN+L     +N      + L + + + G  PD+ TYN L+N FCK+G + 
Sbjct: 10  HPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLF 69

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               ++G I      P+ +T+T+LI   C    + +A  ++ ++      PDV TYT ++
Sbjct: 70  TAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIM 129

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           NGLC++G    A ++F EM     E GVV  P+  +Y+T+ D L KEG V +A  L  +M
Sbjct: 130 NGLCKSGKVEEAKSVFREME----EVGVV--PNRFSYATLIDSLFKEGNVAEAFVLQGRM 183

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
               I  DVV YT+L+ G   A   N A+ +F  ++++ + PN VT++ +++  CK G +
Sbjct: 184 VVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDV 243

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           ++   LL+ M +  + P+  VY++++DG+   G +N A ++   M     + +VF YG L
Sbjct: 244 NKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTL 303

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIR 335
           I+GY K  +   AL L+ EM S+G+ 
Sbjct: 304 IDGYFKADQRGIALDLFKEMKSRGLE 329



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 165/329 (50%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   L K+   +   S+F+ +  +G+ P+ ++Y  LI+   K G V+  FV+
Sbjct: 120 PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVL 179

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            GR++      D V +T+L+ GL        A  +F  L      P+  TY+ LI+G C+
Sbjct: 180 QGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCK 239

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       L +EM   +        P+ I YS+I DG  K+G +++A ++  KM   NI
Sbjct: 240 LGDVNKGELLLQEMEEKH------IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNI 293

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V  Y +LI G+  A+    A  LF EM  +G++ N    +  +N L ++G+M+EA  
Sbjct: 294 LPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADE 353

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+  G+ PD   Y ++MDGF   G+ + A  +   M       DV +Y +LING  
Sbjct: 354 LFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLF 413

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  + E   S ++ M   G+ P   T+NT
Sbjct: 414 KLGKYESE-SFHTGMRQLGLAPDSATFNT 441



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 165/326 (50%), Gaps = 7/326 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N+L   L K   Y++  S    +  +GL PD  T+N +IN +CK G +     +L 
Sbjct: 402 VVAYNVLINGLFKLGKYESE-SFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P+++T   L++ LCA   I +   L   +   G  P   T+  +++   ++ 
Sbjct: 461 EMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSR 520

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
              V L++ +++       G+  K D  TY+T+    C+ G + +A  +F  M  + I  
Sbjct: 521 RADVILHMHDQLV------GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILA 574

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D++TY +LI G+C ++   +A  +  +M+ +GV PNV T+N+++  L     + EA+ L+
Sbjct: 575 DIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLV 634

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M + G+ P+A+ Y+ L+ G    G +    +L+  M + G +    +Y +LI+ + K 
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKG 694

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342
           K++  A  L  EM  +GI P   TY+
Sbjct: 695 KKMSQAKELMQEMQVRGIPPNSSTYD 720



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 157/328 (47%), Gaps = 7/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +  L     K       L LFK + S GL  + +  +  +N   + GR+     +
Sbjct: 295 PNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADEL 354

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD V +TS++ G     +  +A  +  ++       DV  Y  LINGL +
Sbjct: 355 FKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G        +E  +   G   +   PD+ T++T+ +  CKEG +  A +L  +MK   +
Sbjct: 415 LGK-------YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGL 467

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +T   L++  C A +  +   L  +M+  G  P   T   +++   K+ + D    
Sbjct: 468 KPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILH 527

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + ++ +GV+ D S YNTL+  FC  G + RA  +F  M   G + D+ +Y  LI+GYC
Sbjct: 528 MHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYC 587

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            +  ++ A +++S+ML++G+ P V TYN
Sbjct: 588 ISSHLKKAFAVHSQMLTEGVSPNVETYN 615



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 131/254 (51%), Gaps = 6/254 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F  LI G C    I  A  L   ++  G  PD+ TY TL+NG C+ G    A  L  E++
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
             N E      P+ ITY+T+ D  CK   ++ A  ++ +M  +++ PDVVTYT ++ G C
Sbjct: 80  LVNLE------PNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLC 133

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
            +    EAK +F EM + GV PN  ++  +++ L K G + EA  L   M+  G+  D  
Sbjct: 134 KSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVV 193

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
           VY  LMDG    G  N A+++F  +     + +  +Y  LI+G+CK  ++     L  EM
Sbjct: 194 VYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEM 253

Query: 330 LSKGIRPTVVTYNT 343
             K I P V+ Y++
Sbjct: 254 EEKHIFPNVIVYSS 267



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 151/345 (43%), Gaps = 18/345 (5%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F   +R     P   +FN +     K  +    L L   + S GL P+  T NIL+   C
Sbjct: 423 FHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLC 482

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G +     +L  +L   F P   T  +++       R      +  +L   G K D+ 
Sbjct: 483 AAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLS 542

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TLI+  CR G    A  +F++M       G     D ITY+ +  G C    + KA 
Sbjct: 543 TYNTLISTFCRLGMIRRATLVFKDM------MGKGILADIITYNALIHGYCISSHLKKAF 596

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +  +M  E ++P+V TY  L+ G   A    EA  L  +M ++G+ PN  T++++++  
Sbjct: 597 AVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGH 656

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            K G M E  +L   MI  G  P    YN L+  F    ++++AKEL   M+  G   + 
Sbjct: 657 GKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNS 716

Query: 304 FSYGILINGYCK-------NKEIE-----GALSLYSEMLSKGIRP 336
            +Y ILI G+ K       NK ++      A  L+ EM  KG  P
Sbjct: 717 STYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 161/361 (44%), Gaps = 40/361 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  +  L   L K    +    +F+ L    L P+  TY+ LI+  CK+G V+ G ++L 
Sbjct: 192 VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQ 251

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +      P+ + ++S++ G   +  + EA  +  K+      P+VF Y TLI+G  +  
Sbjct: 252 EMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKAD 311

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
              +AL+LF+EM +   E       +     +  + L + G +++A ELF  M    + P
Sbjct: 312 QRGIALDLFKEMKSRGLE------ENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLP 365

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ----------------------------- 227
           D V YTS++ GF  A   ++A  +  EM ++                             
Sbjct: 366 DRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHT 425

Query: 228 -----GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
                G+ P+  TFN ++N  CK G +  A +LL  M   G++P++   N L+   C  G
Sbjct: 426 GMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAG 485

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            + +  +L   M   G      ++  +++   K++  +  L ++ +++  G++  + TYN
Sbjct: 486 EIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYN 545

Query: 343 T 343
           T
Sbjct: 546 T 546



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 125/287 (43%), Gaps = 44/287 (15%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           HP+P    +   +    +K++  D +L +  +L  +G+  DL TYN LI+ FC++G +  
Sbjct: 503 HPTP---TTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRR 559

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
             +V   ++      D +T+ +LI G C  S + +A A+ +++   G  P+V TY  L+ 
Sbjct: 560 ATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLG 619

Query: 131 GLCRTGHTIVALNLFEEM---------------ANGNGEFG-------VVCK-------P 161
           GL        A  L  +M                +G+G+ G       + C+       P
Sbjct: 620 GLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVP 679

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW------- 214
              TY+ +     K   + +AKEL  +M+   I P+  TY  LI G+   +         
Sbjct: 680 KTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSL 739

Query: 215 -----NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
                 EAK LF EM ++G  P   T   I   L K GK  +A R+L
Sbjct: 740 KRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADAQRIL 786



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 67/113 (59%)

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           ++ +V  FNV+++  C+NG++  A  LLE M   G  PD   YNTLM+GFC  G +  AK
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           +L   +       +V +Y  LI+ YCK++ +E AL +Y EM  K + P VVTY
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTY 125



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 78/150 (52%)

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I   V  +  LI G+C   + + A  L   M  +G  P++VT+N +MN  CK G +  A 
Sbjct: 13  IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L+  +  + + P+   Y TL+D +C +  +  A  ++  M     + DV +Y  ++NG 
Sbjct: 73  KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK+ ++E A S++ EM   G+ P   +Y T
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/233 (36%), Positives = 136/233 (58%), Gaps = 8/233 (3%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA------NGNGEFGVVCKPDAITYSTIT 170
           GC+P+V T+ TL+N LCR G  + AL L + M       N  G+  +  K D +  + I 
Sbjct: 5   GCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHI--KADVVISTAIV 62

Query: 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
           D LCK+G    A+ LF +M ++ I P+V+TY  +I  FC++  W++A  L   M+++ + 
Sbjct: 63  DRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQIN 122

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P++VTF+ ++N   K  K+ EA  + + M++  + P    YN+++DGFC   RV+ AK +
Sbjct: 123 PDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRM 182

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             SM S GC  DV ++  LINGYCK K ++  + ++ EM  +GI    VTY T
Sbjct: 183 LDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTT 235



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 151/268 (56%), Gaps = 16/268 (5%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP----------DVFTYTTLINGLCR 134
           P+ VTF +L+  LC E R++EA AL  ++   G +P          DV   T +++ LC+
Sbjct: 8   PNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRLCK 67

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G+ I A NLF EM     E G+   P+ +TY+ + D  C  G    A +L   M ++ I
Sbjct: 68  DGNHINAQNLFTEMH----EKGIF--PNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQI 121

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           NPD+VT+++LI  F      +EA+ ++ EM+   + P  +T+N +++  CK  ++D+A R
Sbjct: 122 NPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKR 181

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +L+ M   G  PD   ++TL++G+C   RV+   E+F  M   G + +  +Y  LI+G+C
Sbjct: 182 MLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFC 241

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +  +++ A  L +EM+S G+ P  +T++
Sbjct: 242 QVGDLDAAQDLLNEMISCGVAPDYITFH 269



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 16/305 (5%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP----------DAVTFTSLIKG 96
           G  P++ T+N L+N  C+ GRV     ++ R++     P          D V  T+++  
Sbjct: 5   GCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDR 64

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
           LC +   + A  LFT++   G  P+V TY  +I+  C +G    A  L   M        
Sbjct: 65  LCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ---- 120

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
               PD +T+S + +   KE  V +A+E++ +M   +I P  +TY S+I GFC  +  ++
Sbjct: 121 --INPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDD 178

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           AK +   M  +G  P+VVTF+ ++N  CK  ++D    +   M + G+  +   Y TL+ 
Sbjct: 179 AKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIH 238

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
           GFC  G ++ A++L   M S G   D  ++  ++ G C  KE+  A ++  ++    + P
Sbjct: 239 GFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSEVCP 298

Query: 337 TVVTY 341
            ++ +
Sbjct: 299 RLIFF 303



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 129/240 (53%), Gaps = 6/240 (2%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L K+ ++    +LF  ++  G+FP++ TYN +I+ FC  GR S    +L  ++     PD
Sbjct: 65  LCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPD 124

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            VTF++LI     E ++ EA  ++ ++  +   P   TY ++I+G C+      A  + +
Sbjct: 125 IVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLD 184

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
            MA+        C PD +T+ST+ +G CK   VD   E+F +M    I  + VTYT+LI 
Sbjct: 185 SMASKG------CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIH 238

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
           GFC   D + A+ L  EM+  GV P+ +TF+ ++  LC   ++ +A  +LE + +  V P
Sbjct: 239 GFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSEVCP 298



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 6/222 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N +      +  +     L + +    + PD+ T++ LIN F K  +VS    +
Sbjct: 88  PNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEI 147

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +LR    P  +T+ S+I G C + R+ +A  +   + + GC PDV T++TLING C+
Sbjct: 148 YKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCK 207

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  + +F EM       G+V   + +TY+T+  G C+ G +D A++L  +M    +
Sbjct: 208 AKRVDNGMEIFCEMHRR----GIV--ANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGV 261

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
            PD +T+  ++ G C   +  +A  +  ++    V P ++ F
Sbjct: 262 APDYITFHCMLAGLCSKKELRKAFAILEDLQKSEVCPRLIFF 303



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 13/203 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +F+ L     K +       ++K +    +FP   TYN +I+ FCK  RV     +
Sbjct: 123 PDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRM 182

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +     +PD VTF++LI G C   R+     +F ++   G   +  TYTTLI+G C+
Sbjct: 183 LDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQ 242

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A +L  EM +     GV   PD IT+  +  GLC +  + KA  +   ++   +
Sbjct: 243 VGDLDAAQDLLNEMISC----GVA--PDYITFHCMLAGLCSKKELRKAFAILEDLQKSEV 296

Query: 195 NPDVV----TYTSLIRGF---CY 210
            P ++    +  S I GF   CY
Sbjct: 297 CPRLIFFLFSLCSFILGFGEVCY 319



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 10/165 (6%)

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN----------VVTFNV 238
           M +    P+VVT+ +L+   C      EA  L   M+++G QPN          VV    
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
           I++ LCK+G    A  L   M + G+ P+   YN ++D FC +GR + A +L   M    
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ 120

Query: 299 CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              D+ ++  LIN + K +++  A  +Y EML   I PT +TYN+
Sbjct: 121 INPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNS 165


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 173/332 (52%), Gaps = 15/332 (4%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG----RVSPGF 72
           V +F+ L     ++  ++  +S+F  +   GL P+L TYN +I+   K G    +V+  F
Sbjct: 268 VYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFF 327

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA-LFTKLRAFGCKPDVFTYTTLING 131
                + R+C  PD +TF SL+  +C+   + EAA  LF ++     + DVF+Y TL++ 
Sbjct: 328 ---DEMQRNCVQPDRITFNSLL-AVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDA 383

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           +C+ G   +A  +  +M            P+ ++YST+ DG  K G  D+A  LF +M+ 
Sbjct: 384 ICKGGQMDLAFEILAQMP------AKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
            NI  D V+Y +L+  +       EA  +  EM   G++ +VVT+N ++    K GK DE
Sbjct: 438 LNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDE 497

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
             ++   M +  V P+   Y+TL+DG+   G    A E+F   +S G   DV  Y  LI+
Sbjct: 498 VKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALID 557

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             CKN  +  A+SL  EM  +GI P VVTYN+
Sbjct: 558 ALCKNGLVGSAVSLIDEMTKEGISPNVVTYNS 589



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 157/286 (54%), Gaps = 7/286 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M R    P  + +FN L    ++   ++   +LF  +++  +  D+++YN L++  C
Sbjct: 327 FDEMQRNCVQPDRI-TFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAIC 385

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           K G++   F +L ++      P+ V+++++I G     R  EA  LF ++R      D  
Sbjct: 386 KGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRV 445

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           +Y TL++   + G +  AL++  EMA+      V  K D +TY+ +  G  K+G  D+ K
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMAS------VGIKKDVVTYNALLGGYGKQGKYDEVK 499

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           ++F +MK E++ P+++TY++LI G+     + EA  +F E    G++ +VV ++ +++ L
Sbjct: 500 KVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDAL 559

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           CKNG +  A  L++ M + G+ P+   YN+++D F  +  + R+ +
Sbjct: 560 CKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSAD 605



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 1/178 (0%)

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +   L + G V  AK +F           V  +++LI  +  +    EA  +F  M +
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296

Query: 227 QGVQPNVVTFNVIMNELCKNG-KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
            G++PN+VT+N +++   K G +  + ++  + M +  V+PD   +N+L+      G   
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWE 356

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A+ LF  M +    +DVFSY  L++  CK  +++ A  + ++M +K I P VV+Y+T
Sbjct: 357 AARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYST 414



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 130/315 (41%), Gaps = 40/315 (12%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V ++N L G   K   YD V  +F  +    + P+L TY+ LI+ + K G       V  
Sbjct: 479 VVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFR 538

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
               +    D V +++LI  LC    +  A +L  ++   G  P+V TY ++I+   R+ 
Sbjct: 539 EFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSA 598

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG--------------------LCKE 176
                    E  A+ +    +     A++  T T+G                     CKE
Sbjct: 599 -------TMERSADYSNGGSLPFSSSALSELTETEGNRVIQLFGQLTSEGNNRMTKDCKE 651

Query: 177 GFVDKA--KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           G  + +   E+F KM    I P+VVT+++++      N + +A  L  E+     +   V
Sbjct: 652 GMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGV 711

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD---------GFCLTGRVN 285
              ++M +  +     +A  L + + ++     ++ YN L D         G  L     
Sbjct: 712 VHGLLMGQ--RENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEG 769

Query: 286 RAKELFVSMESNGCM 300
           R+++++ ++ S+ C+
Sbjct: 770 RSRQVWENVWSDSCL 784



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 239 IMNELCKNGKMDEASRLLELMIQIGVRPD--ASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           I+ EL   G+ D+A    E  ++   R +    + + ++      G+V  AK +F +  S
Sbjct: 202 IIRELGNRGECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFS 261

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G    V+++  LI+ Y ++   E A+S+++ M   G+RP +VTYN
Sbjct: 262 GGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYN 307


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 176/406 (43%), Gaps = 65/406 (16%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M       P V ++  +   L +    D   ++   L   G+ P + TYN+L++  
Sbjct: 197 VFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDAL 256

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK GRV   F + GR++     P  VTF  LI GL    +  E  A+  +++ FG  P+ 
Sbjct: 257 CKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNE 316

Query: 123 FTYTTLINGLCRTGH------------------TIVALNL-----------------FEE 147
             Y  +I   CR GH                  T+V  NL                  +E
Sbjct: 317 VIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDE 376

Query: 148 MA-------------------NGNGEFGVVC-----------KPDAITYSTITDGLCKEG 177
           M                     G G   +V            KP+    +     LCK G
Sbjct: 377 MLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSG 436

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
             ++A E++ ++  + +  +V T  +LI G C  N+  EA  +   M++ GV+ + +T+N
Sbjct: 437 KHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYN 496

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           +++   CK  KMDEA +L + MI+ G +PD   +N  +  +C  G+V     L   M+S 
Sbjct: 497 IMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSE 556

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   D+ +YG +I+GYCK K++  A    +E++  G+RP  V YN 
Sbjct: 557 GLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNA 602



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 157/309 (50%), Gaps = 12/309 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++NI+     K    D  + L   +   G  PDL+T+NI ++ +C +G+V     +L ++
Sbjct: 494 TYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQM 553

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 PD VT+ ++I G C    + +A    T+L   G +P+   Y  LI G  R G+ 
Sbjct: 554 KSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNI 613

Query: 139 IVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
             A+ + + M  NG        +P  +TY+++   +C  G V++ K +F +   ++I   
Sbjct: 614 SDAIGILDTMKYNG-------IQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELG 666

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           V+ YT +I+GFC     +EA   F EM  +G+ PN +T+  +M    K+G  +EAS+L +
Sbjct: 667 VIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFD 726

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING----Y 313
            M+ +G+ PD+  YNTL+ GFC    +++  E    M S    +D  SY   ++G    +
Sbjct: 727 EMVSLGIVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDGITTPW 786

Query: 314 CKNKEIEGA 322
           C+ + +  A
Sbjct: 787 CQKEAVSNA 795



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 147/310 (47%), Gaps = 6/310 (1%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D VL L + + +  L P+       I   CK G+      +  ++L      +  T  +L
Sbjct: 404 DLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNAL 463

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           I GLC  + + EA  +   +   G + D  TY  +I G C+      A+ L ++M     
Sbjct: 464 IHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRG- 522

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
                 KPD  T++      C  G V++   L  +MK E + PD+VTY ++I G+C A D
Sbjct: 523 -----FKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKD 577

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
            ++A     E+M  G++PN V +N ++    +NG + +A  +L+ M   G++P    YN+
Sbjct: 578 MHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNS 637

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           LM   C  G V   K +F           V  Y I+I G+CK  +I+ A+  + EM S+G
Sbjct: 638 LMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRG 697

Query: 334 IRPTVVTYNT 343
           I P  +TY T
Sbjct: 698 IPPNKMTYTT 707



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 150/313 (47%), Gaps = 7/313 (2%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
           KH +     F+ L   GL  ++ T N LI+  C+   +     VL  ++ S    D +T+
Sbjct: 437 KHEEAAEIWFQVLGK-GLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITY 495

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
             +I+G C  S++ EA  L   +   G KPD+FT+   ++  C  G     L+L ++M +
Sbjct: 496 NIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKS 555

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
                    KPD +TY TI DG CK   + KA E   ++    + P+ V Y +LI G+  
Sbjct: 556 EG------LKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGR 609

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
             + ++A  +   M   G+QP  VT+N +M  +C  G ++E   +    I   +      
Sbjct: 610 NGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIG 669

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330
           Y  ++ GFC  G+++ A   F  M S G   +  +Y  L+  Y K+   E A  L+ EM+
Sbjct: 670 YTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMV 729

Query: 331 SKGIRPTVVTYNT 343
           S GI P  V+YNT
Sbjct: 730 SLGIVPDSVSYNT 742



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 157/328 (47%), Gaps = 8/328 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V + N L   L +  +      + K + + G+  D  TYNI+I   CK  ++     +  
Sbjct: 457 VATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRD 516

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +++  F PD  TF   +   C   ++ E   L  ++++ G KPD+ TY T+I+G C+  
Sbjct: 517 DMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAK 576

Query: 137 HTIVALN-LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
               A   L E M NG        +P+A+ Y+ +  G  + G +  A  +   MK   I 
Sbjct: 577 DMHKANEYLTELMKNG-------LRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQ 629

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P  VTY SL+   C+A    E K +F + + + ++  V+ + +I+   CK GK+DEA   
Sbjct: 630 PTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMY 689

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
            + M   G+ P+   Y TLM  +  +G    A +LF  M S G + D  SY  LI+G+C+
Sbjct: 690 FKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCE 749

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              ++  +   +EM S+ ++    +YN 
Sbjct: 750 VDSLDKMVESPAEMSSQVLKQDGCSYNA 777



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 28/338 (8%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P+P P  S   L   +  + H         R     L P + T  +L +       +   
Sbjct: 58  PAPLPASSAQRLLQHILSDAHASA-----SRHAEDLLSPRVSTL-LLQSLVADRASLPSA 111

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLC---------------AESRIMEAAALFTKLRAF 116
             ++ R+LR  F P +V   ++    C               A   +  AA  F +L A 
Sbjct: 112 RRLVSRLLR--FNPLSVAAAAIADSHCTATADLLVRACLNSPAPGSLSRAADAFLELSAR 169

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G  P + T + L+  L   G   VA  +F EM +G         PD  TY+ +   LC+ 
Sbjct: 170 GASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGK-----TVAPDVHTYTAMIKALCRA 224

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G +D A  +  +++   I P VVTY  L+   C +    EA  L   M++  V+P++VTF
Sbjct: 225 GEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTF 284

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            ++++ L +  +  E   +L+ M   G+ P+  +YN ++   C  G  + A +LF  M S
Sbjct: 285 GILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVS 344

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            G  + V +Y ++    CK  E+E A  +  EML  G+
Sbjct: 345 KGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGM 382



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 1/183 (0%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKD-ENINPDVVTYTSLIRGFCYANDWNEAKC 219
           P   T S + + L   G +D A+++F +M+D + + PDV TYT++I+  C A + + A  
Sbjct: 173 PSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFA 232

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +  E+   G+QP VVT+NV+M+ LCK+G+++EA RL   M++  VRP    +  L+ G  
Sbjct: 233 MLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLA 292

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
              +      +   M+  G   +   Y  +I  +C+      AL L+ EM+SKGI+ TVV
Sbjct: 293 RGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVV 352

Query: 340 TYN 342
           TYN
Sbjct: 353 TYN 355



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 125/264 (47%), Gaps = 6/264 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +FNI           + +L L  ++ S GL PD+ TY  +I+ +CK   +      
Sbjct: 525 PDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEY 584

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++++   P+AV + +LI G      I +A  +   ++  G +P   TY +L+  +C 
Sbjct: 585 LTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCH 644

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G       +F +    + E GV      I Y+ I  G CK G +D+A   F +M    I
Sbjct: 645 AGLVEEVKAVFAQCIVKDIELGV------IGYTIIIQGFCKIGKIDEAVMYFKEMHSRGI 698

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ +TYT+L+  +  + +  EA  LF EM+  G+ P+ V++N +++  C+   +D+   
Sbjct: 699 PPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVE 758

Query: 255 LLELMIQIGVRPDASVYNTLMDGF 278
               M    ++ D   YN  +DG 
Sbjct: 759 SPAEMSSQVLKQDGCSYNAFVDGI 782



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 6   YMLRMHPS--PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           Y   MH    PP   ++  L    +K+ + +    LF  + S+G+ PD  +YN LI+ FC
Sbjct: 689 YFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFC 748

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
           ++  +         +       D  ++ + + G+
Sbjct: 749 EVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDGI 782


>gi|357153642|ref|XP_003576519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Brachypodium distachyon]
          Length = 620

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 174/332 (52%), Gaps = 6/332 (1%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P+ P + + N +   L K + +D V  LF  + S G+ P L TYN L+N     G ++  
Sbjct: 120 PTLPALPACNAILDGLVKARRFDRVWKLFDEMLSRGMVPSLVTYNTLVNACRHEGDMTKA 179

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           + V  +++     P+ VT++++I  LC E  ++EA  LF  ++  G +P+++TY  L++ 
Sbjct: 180 WEVWNQMVARRIDPNVVTYSTMICVLCEEGCVIEAERLFIMMKETGVQPNLYTYNALMSS 239

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            C+       L L++E+       G+V  P+A+  +T+  G      +   K  FL+M  
Sbjct: 240 HCKRDGVNRTLTLYQELLKS----GLV--PNAVIITTLIGGFFLANRISDVKNAFLEMHR 293

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             I P V  Y SLI G   +    EA  ++ +M   G+ P+  T ++I+  LC  G++  
Sbjct: 294 YGIAPTVPVYNSLIDGAFRSGYAQEALTVYQDMTRVGLCPDEFTCSIIVRGLCCGGQVQV 353

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A+R LELM Q G+  +A+ YN L+D  C  G +  A      M   G   +V +Y  LI+
Sbjct: 354 ATRFLELMQQSGINLNAAAYNALIDEHCKDGNLAEALATCTRMNEVGIEPNVVTYSSLID 413

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G+ K +++E A+ +Y EM++KG+ P V+TY  
Sbjct: 414 GHSKKRKMEIAMGIYMEMVAKGVEPNVLTYTA 445



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 145/309 (46%), Gaps = 6/309 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ +   L +         LF  +   G+ P+LYTYN L++  CK   V+    +
Sbjct: 193 PNVVTYSTMICVLCEEGCVIEAERLFIMMKETGVQPNLYTYNALMSSHCKRDGVNRTLTL 252

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L+S   P+AV  T+LI G    +RI +    F ++  +G  P V  Y +LI+G  R
Sbjct: 253 YQELLKSGLVPNAVIITTLIGGFFLANRISDVKNAFLEMHRYGIAPTVPVYNSLIDGAFR 312

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G+   AL ++++M        V   PD  T S I  GLC  G V  A      M+   I
Sbjct: 313 SGYAQEALTVYQDMTR------VGLCPDEFTCSIIVRGLCCGGQVQVATRFLELMQQSGI 366

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           N +   Y +LI   C   +  EA      M + G++PNVVT++ +++   K  KM+ A  
Sbjct: 367 NLNAAAYNALIDEHCKDGNLAEALATCTRMNEVGIEPNVVTYSSLIDGHSKKRKMEIAMG 426

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M+  GV P+   Y  ++ G    G ++ A  L   M   G   +  +  +L++G C
Sbjct: 427 IYMEMVAKGVEPNVLTYTAMIHGHAKFGDLDAAFRLHKEMAEKGISSNAITVSVLVDGLC 486

Query: 315 KNKEIEGAL 323
           +   ++ A+
Sbjct: 487 RESRVQDAV 495



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 159/324 (49%), Gaps = 9/324 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
             +L   L++   +D  LS+F RL ++   P L   N +++   K  R    + +   +L
Sbjct: 96  LGVLVIALSQMGLHDDALSVFCRLPTL---PALPACNAILDGLVKARRFDRVWKLFDEML 152

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P  VT+ +L+     E  + +A  ++ ++ A    P+V TY+T+I  LC  G  I
Sbjct: 153 SRGMVPSLVTYNTLVNACRHEGDMTKAWEVWNQMVARRIDPNVVTYSTMICVLCEEGCVI 212

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  LF  M     E GV  +P+  TY+ +    CK   V++   L+ ++    + P+ V
Sbjct: 213 EAERLFIMMK----ETGV--QPNLYTYNALMSSHCKRDGVNRTLTLYQELLKSGLVPNAV 266

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
             T+LI GF  AN  ++ K  F+EM   G+ P V  +N +++   ++G   EA  + + M
Sbjct: 267 IITTLIGGFFLANRISDVKNAFLEMHRYGIAPTVPVYNSLIDGAFRSGYAQEALTVYQDM 326

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            ++G+ PD    + ++ G C  G+V  A      M+ +G   +  +Y  LI+ +CK+  +
Sbjct: 327 TRVGLCPDEFTCSIIVRGLCCGGQVQVATRFLELMQQSGINLNAAAYNALIDEHCKDGNL 386

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             AL+  + M   GI P VVTY++
Sbjct: 387 AEALATCTRMNEVGIEPNVVTYSS 410



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 23/217 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L    +K +  +  + ++  + + G+ P++ TY  +I+   K G +   F +
Sbjct: 403 PNVVTYSSLIDGHSKKRKMEIAMGIYMEMVAKGVEPNVLTYTAMIHGHAKFGDLDAAFRL 462

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +     + +A+T + L+ GLC ESR+ +A     K        D       IN  C 
Sbjct: 463 HKEMAEKGISSNAITVSVLVDGLCRESRVQDAVMFIMKYAGQKKPGD-------INSFCS 515

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
              T    ++                 +++TY T+  GL  +G   +A + F  M++ ++
Sbjct: 516 NYTTEEDCSIL----------------NSVTYMTLIYGLYIDGQYHEAGKFFSCMRESDM 559

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
            PD  TY+ LIRG C       A  L+ +M+  GV+P
Sbjct: 560 VPDSFTYSLLIRGQCMLGYVLNAMMLYADMVKIGVKP 596


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 157/325 (48%), Gaps = 10/325 (3%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V S+  L   L +    D  + LF  ++     PD++ Y  L+   C   R   G ++L 
Sbjct: 45  VVSYATLIEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLR 100

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R+    + P    + +++   C E +  EA  +  ++   G  P V T T +IN  C+ G
Sbjct: 101 RMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEG 160

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               AL + E M          CKP+  TY+ +  G C EG V KA  L  KM+   +NP
Sbjct: 161 RMSDALRVLELMKLRG------CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNP 214

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTY  LIRG C       A  L   M   G+  +  T+N ++N LCK+G+ D+A  L 
Sbjct: 215 DAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF 274

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           + +   G++P+A  +N+L++G C +G+ + A +    M S GC  D ++Y   I   CK 
Sbjct: 275 DSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKM 334

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTY 341
           K  +  LS   EML K ++P+ V Y
Sbjct: 335 KGSQEGLSFIGEMLQKDVKPSTVNY 359



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 157/328 (47%), Gaps = 8/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +   +     K       L + + +   G  P+++TYN L+  FC  G+V     +
Sbjct: 144 PCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTL 203

Query: 75  LGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           L + +R+C   PDAVT+  LI+G C +  I  A  L   +   G   D +TY  LIN LC
Sbjct: 204 LNK-MRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALC 262

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G T  A +LF+ +           KP+A+T++++ +GLCK G  D A +   KM    
Sbjct: 263 KDGRTDQACSLFDSLETRG------IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG 316

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD  TY+S I   C      E      EM+ + V+P+ V + +++++L K       +
Sbjct: 317 CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVA 376

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           R    M+  G  PD   Y T M  +C+ GR+N A+ + + M  NG   D  +Y  L++G+
Sbjct: 377 RTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGH 436

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
               + + A+S+  +M S    P   TY
Sbjct: 437 ASIGQTDHAVSILKQMTSVASVPNQFTY 464



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 154/297 (51%), Gaps = 10/297 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PD YT+N LI  +C+  +V     +  ++    F  D V++ +LI+GLC   RI EA
Sbjct: 5   GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEA 64

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             LF ++     +PD+  Y  L+ GLC        L +   M     E G   +P    Y
Sbjct: 65  VELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRMK----ELG--WRPSTRAY 114

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           + + D  C+E    +A+E+  +M ++ + P VVT T++I  +C     ++A  +   M  
Sbjct: 115 AAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKL 174

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G +PNV T+N ++   C  GK+ +A  LL  M   GV PDA  YN L+ G C+ G +  
Sbjct: 175 RGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIES 234

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           A  L   ME +G + D ++Y  LIN  CK+   + A SL+  + ++GI+P  VT+N+
Sbjct: 235 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNS 291



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 155/333 (46%), Gaps = 6/333 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++++    P V ++N L             ++L  ++ + G+ PD  TYN+LI   C  G
Sbjct: 171 LMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDG 230

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +   F +L  +       D  T+ +LI  LC + R  +A +LF  L   G KP+  T+ 
Sbjct: 231 HIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFN 290

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           +LINGLC++G   +A    E+M +        C PD  TYS+  + LCK     +     
Sbjct: 291 SLINGLCKSGKADIAWKFLEKMVSAG------CTPDTYTYSSFIEHLCKMKGSQEGLSFI 344

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  +++ P  V YT +I       ++      + EM+  G  P+VVT+   M   C  
Sbjct: 345 GEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIE 404

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G+++EA  +L  M + GV  D   YNTLMDG    G+ + A  +   M S   + + F+Y
Sbjct: 405 GRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTY 464

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
            IL+    + + +E  L L    + K I  T V
Sbjct: 465 FILLRHLVRMRLVEDVLPLTPAGVWKAIELTDV 497



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 157/329 (47%), Gaps = 10/329 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L     +    D    LF ++   G   D+ +Y  LI   C+ GR+     +
Sbjct: 8   PDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVEL 67

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G + +    PD   + +L+KGLC   R  E   +  +++  G +P    Y  +++  CR
Sbjct: 68  FGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCR 123

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  + +EM      F     P  +T + + +  CKEG +  A  +   MK    
Sbjct: 124 ERKAKEAEEMLQEM------FEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC 177

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+V TY +L++GFC     ++A  L  +M   GV P+ VT+N+++   C +G ++ A R
Sbjct: 178 KPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFR 237

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL LM   G+  D   YN L++  C  GR ++A  LF S+E+ G   +  ++  LING C
Sbjct: 238 LLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLC 297

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K+ + + A     +M+S G  P   TY++
Sbjct: 298 KSGKADIAWKFLEKMVSAGCTPDTYTYSS 326



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 142/307 (46%), Gaps = 8/307 (2%)

Query: 38  SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI-LRSCFTPDAVTFTSLIKG 96
            + + +   GL P + T   +IN +CK GR+S    VL  + LR C  P+  T+ +L++G
Sbjct: 132 EMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC-KPNVWTYNALVQG 190

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
            C E ++ +A  L  K+RA G  PD  TY  LI G C  GH   A  L   M  G+G   
Sbjct: 191 FCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLM-EGDGLIA 249

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
                D  TY+ + + LCK+G  D+A  LF  ++   I P+ VT+ SLI G C +   + 
Sbjct: 250 -----DQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADI 304

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A     +M+  G  P+  T++  +  LCK     E    +  M+Q  V+P    Y  ++ 
Sbjct: 305 AWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIH 364

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
                         +  M S+GC  DV +Y   +  YC    +  A ++  EM   G+  
Sbjct: 365 KLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTV 424

Query: 337 TVVTYNT 343
             + YNT
Sbjct: 425 DTMAYNT 431



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 147/373 (39%), Gaps = 46/373 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN L   L K+   D      +++ S G  PD YTY+  I   CKM     G   
Sbjct: 284 PNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSF 343

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +G +L+    P  V +T +I  L  E      A  + ++ + GC PDV TYTT +   C 
Sbjct: 344 IGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCI 403

Query: 135 TGHTIVALNLFEEMA---------------NGNGEFG--------------VVCKPDAIT 165
            G    A N+  EM+               +G+   G              V   P+  T
Sbjct: 404 EGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFT 463

Query: 166 YSTITDGLCKEGFVD-----------KAKEL------FLKMKDENINPDVVTYTSLIRGF 208
           Y  +   L +   V+           KA EL      F  MK     P+  TY+S++ GF
Sbjct: 464 YFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGF 523

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
                  EA  L   M +  +  N   +  ++   CK+ +  +A  L+  MIQ G  P  
Sbjct: 524 SEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQL 583

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y  L+ G    G+ ++AKE+F++        D   + ++I+G  K    + +  +   
Sbjct: 584 MSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIM 643

Query: 329 MLSKGIRPTVVTY 341
           +     RP+  TY
Sbjct: 644 LERMNCRPSHQTY 656



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 144/306 (47%), Gaps = 11/306 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ I+   L K ++Y  V   +  + S G  PD+ TY   +  +C  GR++    V
Sbjct: 354 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 413

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + ++  T D + + +L+ G  +  +   A ++  ++ +    P+ FTY  L+  L R
Sbjct: 414 LMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVR 473

Query: 135 TGHTIVALNLFE-------EMANGNGEFGVVCK----PDAITYSTITDGLCKEGFVDKAK 183
                  L L         E+ +  G F V+ K    P++ TYS+I +G  ++G  ++A 
Sbjct: 474 MRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEAT 533

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L   MK+++I+ +   YT+L+  FC +  + +A  L   M+  G  P ++++  +++ L
Sbjct: 534 SLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGL 593

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
              G+ D+A  +          PD  V+  ++DG    G  + ++E+ + +E   C    
Sbjct: 594 ICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSH 653

Query: 304 FSYGIL 309
            +Y +L
Sbjct: 654 QTYAML 659



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 111/242 (45%), Gaps = 23/242 (9%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV------SPG- 71
           ++N L    A     D  +S+ K++ S+   P+ +TY IL+    +M  V      +P  
Sbjct: 428 AYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAG 487

Query: 72  ----------FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
                     F +   + ++ F P++ T++S+++G   + R  EA +L + ++      +
Sbjct: 488 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 547

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
              YT L+   C++   + A  L   M     + G +  P  ++Y  +  GL  EG  DK
Sbjct: 548 EDIYTALVTCFCKSKRYLDAWVLVCSMI----QHGFI--PQLMSYQHLLSGLICEGQTDK 601

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           AKE+F+  + ++ +PD + +  +I G       + ++ + I +     +P+  T+ ++  
Sbjct: 602 AKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTE 661

Query: 242 EL 243
           EL
Sbjct: 662 EL 663


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 165/322 (51%), Gaps = 6/322 (1%)

Query: 22   ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
            +L   L   +  +  L L +     G  P +  YN+LI+ +C+ G +  G ++LG +  +
Sbjct: 983  VLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETN 1042

Query: 82   CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
             F P  VT+ SLI  L  +  + +  +LF ++R  G  P+V  Y ++I+ LC       A
Sbjct: 1043 GFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQA 1102

Query: 142  LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
            + + ++M      F   C PD IT++T+  GLC EG V KA+    +     +NP+ ++Y
Sbjct: 1103 MVILKQM------FASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSY 1156

Query: 202  TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            T LI GFC   +   A  L +EMM +G  P+VVTF  +++ L   GK+ EA  + E M +
Sbjct: 1157 TPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTE 1216

Query: 262  IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
              V PD ++YN L+ G C    +  AK +   M       D F Y  LI+G+ +++ +  
Sbjct: 1217 RQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGD 1276

Query: 322  ALSLYSEMLSKGIRPTVVTYNT 343
            A  ++  M  KG+ P +V+ N 
Sbjct: 1277 ARKIFEFMEHKGVCPDIVSCNA 1298



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 161/327 (49%), Gaps = 6/327 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V  +N +   L   +     + + K++ + G  PD+ T+N LI   C  G V      
Sbjct: 1081 PNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHF 1140

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L   +R    P+ +++T LI G C    +M A+ L  ++   G  PDV T+  LI+GL  
Sbjct: 1141 LREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVV 1200

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G    AL + E+M            PD   Y+ +  GLCK+  +  AK +  +M ++N+
Sbjct: 1201 AGKVSEALIVREKMTERQ------VFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNV 1254

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PD   Y +LI GF  + +  +A+ +F  M  +GV P++V+ N ++   C+ G M EA  
Sbjct: 1255 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAIL 1314

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             +  M ++G  PD   Y T++ G+   G +N A      M    C  +V +Y  LINGYC
Sbjct: 1315 CMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYC 1374

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTY 341
            K  + + A  L++ M ++ + P VVTY
Sbjct: 1375 KTGDTDSAEGLFANMQAEALSPNVVTY 1401



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 161/329 (48%), Gaps = 6/329 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + ++  L   L K    + + SLF  +   G  P++  YN +I+  C     +   V+
Sbjct: 1046 PTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVI 1105

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L ++  S   PD +TF +LI GLC E  + +A     +       P+  +YT LI+G C 
Sbjct: 1106 LKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCM 1165

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G  +VA +L  EM  G G       PD +T+  +  GL   G V +A  +  KM +  +
Sbjct: 1166 RGELMVASDLLVEMM-GRGH-----TPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 1219

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PDV  Y  LI G C       AK +  EM+++ VQP+   +  +++   ++  + +A +
Sbjct: 1220 FPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARK 1279

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            + E M   GV PD    N ++ G+C  G ++ A     +M   GC+ D F+Y  +I+GY 
Sbjct: 1280 IFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYA 1339

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K   + GAL    +M+ +  +P VVTY++
Sbjct: 1340 KQGNLNGALRWLCDMIKRKCKPNVVTYSS 1368



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 156/328 (47%), Gaps = 6/328 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + +FN L   L    H        +      L P+  +Y  LI+ FC  G +     +
Sbjct: 1116 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDL 1175

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L  ++    TPD VTF +LI GL    ++ EA  +  K+      PDV  Y  LI+GLC+
Sbjct: 1176 LVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 1235

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  A N+ EEM   N       +PD   Y+T+ DG  +   +  A+++F  M+ + +
Sbjct: 1236 KRMLPAAKNILEEMLEKN------VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGV 1289

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PD+V+  ++I+G+C     +EA      M   G  P+  T+  +++   K G ++ A R
Sbjct: 1290 CPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALR 1349

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             L  MI+   +P+   Y++L++G+C TG  + A+ LF +M++     +V +Y ILI    
Sbjct: 1350 WLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLF 1409

Query: 315  KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            K  ++  A   +  ML     P  VT +
Sbjct: 1410 KKDKVLRAGLYFETMLLNHCSPNDVTLH 1437



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 152/355 (42%), Gaps = 25/355 (7%)

Query: 3    IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
            + + M R H   P V +F  L   L         L + +++    +FPD+  YN+LI+  
Sbjct: 1176 LVEMMGRGHT--PDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGL 1233

Query: 63   CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            CK   +     +L  +L     PD   + +LI G      + +A  +F  +   G  PD+
Sbjct: 1234 CKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDI 1293

Query: 123  FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             +   +I G C+ G    A+     M        V C PD  TY+T+  G  K+G ++ A
Sbjct: 1294 VSCNAMIKGYCQFGMMSEAILCMSNMRK------VGCIPDEFTYTTVISGYAKQGNLNGA 1347

Query: 183  KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
                  M      P+VVTY+SLI G+C   D + A+ LF  M  + + PNVVT+ +++  
Sbjct: 1348 LRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGS 1407

Query: 243  LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF------------CLTGRVNRAKEL 290
            L K  K+  A    E M+     P+    + L++G             C T  V+    L
Sbjct: 1408 LFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDAL 1467

Query: 291  FVSMES----NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             V  +      G  R+  +Y  +I   C++  +  AL   + M  KG  P  +T+
Sbjct: 1468 LVVFKKLVFDIGDPRNS-AYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITF 1521



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 139/350 (39%), Gaps = 56/350 (16%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V  +N+L   L K +      ++ + +    + PD + Y  LI+ F +   +     +
Sbjct: 1221 PDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKI 1280

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               +      PD V+  ++IKG C    + EA    + +R  GC PD FTYTT+I+G  +
Sbjct: 1281 FEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAK 1340

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G+   AL    +M          CKP+ +TYS++ +G CK G  D A+ LF  M+ E +
Sbjct: 1341 QGNLNGALRWLCDMIKRK------CKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEAL 1394

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT------------------- 235
            +P+VVTYT LI      +    A   F  M+     PN VT                   
Sbjct: 1395 SPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSI 1454

Query: 236  -------------------------------FNVIMNELCKNGKMDEASRLLELMIQIGV 264
                                           +N I+  LC++  + EA      M + G 
Sbjct: 1455 CCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGY 1514

Query: 265  RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             P+   + +L+ GFC  G+    + +  +         +F Y  L + Y 
Sbjct: 1515 VPNPITFLSLLYGFCSVGKSVNWRTILPNEFQQEEFEIIFRYKFLFDQYA 1564



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 106/259 (40%), Gaps = 7/259 (2%)

Query: 84   TPDAVTFTSLIKGLCAESRIMEAAALFTKLR-AFGCKPDVFTYTTLINGLCRTGHTIVAL 142
             P      +L+        + +A  +  ++R  +G  P+V     L+  L        A 
Sbjct: 904  APTRACLGALVAAYADAGMLGKATEMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDAR 963

Query: 143  NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
             L++EM       G     D  +   +  GLC E  V++  +L          P VV Y 
Sbjct: 964  KLYDEM------LGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYN 1017

Query: 203  SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
             LI G+C   D      L  EM   G  P +VT+  ++N L K G +++   L   M + 
Sbjct: 1018 VLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKR 1077

Query: 263  GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
            G  P+  +YN+++D  C      +A  +   M ++GC  D+ ++  LI G C    +  A
Sbjct: 1078 GFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKA 1137

Query: 323  LSLYSEMLSKGIRPTVVTY 341
                 E + + + P  ++Y
Sbjct: 1138 EHFLREAIRRELNPNQLSY 1156



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 1/168 (0%)

Query: 177  GFVDKAKELFLKMKDENIN-PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
            G + KA E+  +++++  + P+V     L++       W++A+ L+ EM+ +    +  +
Sbjct: 921  GMLGKATEMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYS 980

Query: 236  FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
              V++  LC   +++E  +L+E     G  P    YN L+DG+C  G + R   L   ME
Sbjct: 981  TCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEME 1040

Query: 296  SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +NG +  + +YG LIN   K  ++E   SL+ EM  +G  P V  YN+
Sbjct: 1041 TNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNS 1088



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 77/171 (45%)

Query: 173  LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            L ++   D A++L+ +M  ++   D  +   L+RG C      E   L       G  P+
Sbjct: 953  LVEQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPH 1012

Query: 233  VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
            VV +NV+++  C+ G M     LL  M   G  P    Y +L++     G + +   LF+
Sbjct: 1013 VVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFL 1072

Query: 293  SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             M   G   +V  Y  +I+  C  +    A+ +  +M + G  P ++T+NT
Sbjct: 1073 EMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNT 1123


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 152/298 (51%), Gaps = 7/298 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ PD  ++  L+   C+ GR      +L  +    F  D+ T T +++  C + R    
Sbjct: 176 GVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNV 235

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             LF ++   G  P++  Y+  I+GLC  G+   A ++ EEM  G G      KP+  T+
Sbjct: 236 TDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMV-GKG-----LKPNVYTH 289

Query: 167 STITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           +++ DGLCK G++++A  LFLK+ K  +  P+V TYT +I G+C       A+ L   M+
Sbjct: 290 TSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV 349

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           +QG+ PN  T+  +++  CK G  D A  L+  M   G  P+   YN ++ GFC  G++ 
Sbjct: 350 EQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQ 409

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A ++     S G   D  +Y ILI  +CK   I  AL L+ +M  K   P + TY T
Sbjct: 410 EAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTT 467



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 164/351 (46%), Gaps = 42/351 (11%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           +   +  V  LF+R++ +G  P++  Y+  I+  C+ G V   F VL  ++     P+  
Sbjct: 228 RQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVY 287

Query: 89  TFTSLIKGLCAESRIMEAAALFTKL-RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147
           T TSLI GLC    +  A  LF KL ++   KP+V TYT +I G C+ G    A  L   
Sbjct: 288 THTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGR 347

Query: 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
           M     E G+   P+  TY+T+  G CK G  D+A EL  KMK E   P++ TY ++I G
Sbjct: 348 MV----EQGLA--PNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGG 401

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM-------- 259
           FC      EA  +      QG+  + VT+ +++ E CK G +  A  L + M        
Sbjct: 402 FCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPD 461

Query: 260 ---------------------------IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
                                      + IG+ P    Y +++ G+C  G++  A ++F 
Sbjct: 462 IHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFE 521

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M  +GC+ D  +YG LI+  CK   +E A +L+  ML K + P  VT  T
Sbjct: 522 RMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLVPCDVTRVT 572



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 172/342 (50%), Gaps = 8/342 (2%)

Query: 4   FDYMLRMHPS-PPPVCSFNIL-FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           FD M R      P   SF  L  GC  + + ++   +L   + + G   D  T  +++  
Sbjct: 167 FDGMARAAGGVRPDHRSFRALVLGCCREGR-FEEADALLAAMWAQGFCLDSATCTVVVRA 225

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           FC+ GR      +  R+      P+ V +++ I GLC    + +A  +  ++   G KP+
Sbjct: 226 FCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPN 285

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           V+T+T+LI+GLC+ G    A  LF ++   +       KP+  TY+ +  G CKEG + +
Sbjct: 286 VYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSY-----KPNVHTYTVMIGGYCKEGKLAR 340

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A+ L  +M ++ + P+  TYT+LI G C    ++ A  L  +M  +G  PN+ T+N I+ 
Sbjct: 341 AEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIG 400

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             CK GK+ EA ++L +    G+  D   Y  L+   C  G +  A +LF  M    C  
Sbjct: 401 GFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHP 460

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           D+ +Y  +I  YC+ +++E +  L+ + LS G+ PT  TY +
Sbjct: 461 DIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTS 502



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +F  +++     P V ++ ++ G   K         L  R+   GL P+  TY  LI+
Sbjct: 306 FRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIH 365

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK G     F ++ ++    F P+  T+ ++I G C + +I EA  +     + G   
Sbjct: 366 GHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHL 425

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D  TYT LI   C+ GH   AL+LF++MA  +      C PD  TY+TI    C++  ++
Sbjct: 426 DKVTYTILITEHCKQGHITCALDLFKQMAEKS------CHPDIHTYTTIIAMYCQQRQME 479

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           ++++LF K     + P   TYTS+I G+C       A  +F  M+  G  P+ +T+  ++
Sbjct: 480 QSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALI 539

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287
           + LCK  +++EA  L E M+   + P      TL   +C   ++  A
Sbjct: 540 SSLCKESRLEEARALFETMLDKHLVPCDVTRVTLAYEYCRRDKITIA 586



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 140/320 (43%), Gaps = 10/320 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++  L     K   +D    L  ++   G  P++YTYN +I  FCK G++   + V
Sbjct: 355 PNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKV 414

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L          D VT+T LI   C +  I  A  LF ++    C PD+ TYTT+I   C+
Sbjct: 415 LRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQ 474

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 +  LF++  +     G+V  P   TY+++  G C+ G +  A ++F +M     
Sbjct: 475 QRQMEQSQQLFDKCLS----IGLV--PTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGC 528

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD +TY +LI   C  +   EA+ LF  M+D+ + P  VT   +  E C+  K+  A  
Sbjct: 529 LPDSITYGALISSLCKESRLEEARALFETMLDKHLVPCDVTRVTLAYEYCRRDKITIAVS 588

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+   ++  R  A   + L+      G ++ A     ++       D  +Y   IN  C
Sbjct: 589 FLD---RLDKRQQAHTADALVRKLSTVGNLDAASLFLKNVLDKHYAVDHATYTSFINS-C 644

Query: 315 KNKEIEGALSLYSEMLSKGI 334
                    S  SE +SK I
Sbjct: 645 YESNRYALASEISEKISKRI 664



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 153/324 (47%), Gaps = 22/324 (6%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82
           L   +A ++     L+LF+RL+S    PD+     L          +  FV  G +    
Sbjct: 58  LLPSVADSEGSAAALALFRRLSS---RPDMRRLMRLY------ATAATAFVARGNL---- 104

Query: 83  FTPDAVTFTSLIKGLCAES-RIMEAAALFTKLRAFGCKPDVFTYTTLIN-GLCRTGHTIV 140
             P A      +    AE+ R+ EAA +  +LR+ G    V T   ++  GL   G    
Sbjct: 105 --PMAHEAARAMVAAFAEAGRLREAADMLLELRSHGLPLVVETANWVLRVGLRHPGCFAH 162

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A   F+ MA   G  GV  +PD  ++  +  G C+EG  ++A  L   M  +    D  T
Sbjct: 163 AREAFDGMARAAG--GV--RPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSAT 218

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
            T ++R FC    +     LF  M + G  PN+V ++  ++ LC+ G + +A  +LE M+
Sbjct: 219 CTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMV 278

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM-ESNGCMRDVFSYGILINGYCKNKEI 319
             G++P+   + +L+DG C  G + RA  LF+ + +S+    +V +Y ++I GYCK  ++
Sbjct: 279 GKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKL 338

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A  L   M+ +G+ P   TY T
Sbjct: 339 ARAEMLLGRMVEQGLAPNTNTYTT 362


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 170/334 (50%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + + H    P  +   +   L + +++  V   +K +   G    LY +NIL+  FCK G
Sbjct: 91  LTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +LI G      + E   L + + A G +PDV+TY+
Sbjct: 151 EMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+ G    A  LF EM +     G+V  P+ +T++T+  G CK   VD A E++
Sbjct: 211 ILINGLCKEGKLDEANELFNEMLDN----GLV--PNGVTFTTLIHGHCKNEKVDLAMEIY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  + ++PD++TY +LI G C   +  +   L  EM+  G++P+ +++  +++  CK 
Sbjct: 265 KQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A  L   MIQ  +R D   Y  L+   C  GR + A+++   M S G   D  +Y
Sbjct: 325 GDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK ++ + A  L  EM   G  P VVT
Sbjct: 385 TMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 133/252 (52%), Gaps = 6/252 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F  L++  C E  +  A ++F  +  +G +P V ++ TLING  + G       L   M 
Sbjct: 139 FNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMH 198

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
               +      PD  TYS + +GLCKEG +D+A ELF +M D  + P+ VT+T+LI G C
Sbjct: 199 ASGAQ------PDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHC 252

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                + A  ++ +M+ QG+ P+++T+N ++  LCK G++ +   L++ MI  G++PD  
Sbjct: 253 KNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKI 312

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y TL+DG C  G +  A EL   M       D  +Y  LI+  C+      A  +  EM
Sbjct: 313 SYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREM 372

Query: 330 LSKGIRPTVVTY 341
           LS G++P   TY
Sbjct: 373 LSVGLKPDNGTY 384



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 98/178 (55%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +    CKEG +  A+ +F  +    + P VV++ +LI G+    D +E   L   M 
Sbjct: 139 FNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMH 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G QP+V T+++++N LCK GK+DEA+ L   M+  G+ P+   + TL+ G C   +V+
Sbjct: 199 ASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S G   D+ +Y  LI G CK  E++    L  EM+  G++P  ++Y T
Sbjct: 259 LAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTT 316



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNG------------EFGVVCKPDAITYSTI 169
           + +Y T+I+ LC     I A +L + + +  G            E     + D   +S +
Sbjct: 13  LHSYCTMIHLLCTHQMLIEAKSLIQVVVSRKGKDSASDVFEAILETKGTQRSDFYVFSGL 72

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GFV  A + F   K   I     T   ++        +      + E+++ G 
Sbjct: 73  MIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGY 132

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M   CK G+M  A  + + + + G+RP    +NTL++G+   G ++    
Sbjct: 133 PASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFR 192

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y ILING CK  +++ A  L++EML  G+ P  VT+ T
Sbjct: 193 LKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTT 246



 Score = 45.4 bits (106), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+ M+   P   S+  L     K    +  L L  ++    +  D   Y  LI+C 
Sbjct: 298 LIDEMI-MNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCL 356

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR S    +L  +L     PD  T+T +I   C +     A+ L  +++  G  P V
Sbjct: 357 CREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLPGV 416

Query: 123 FT 124
            T
Sbjct: 417 VT 418


>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 689

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 171/364 (46%), Gaps = 41/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN-------------- 60
           P V +F  L     K    D    LFK +   G+ PDL  Y+ LI+              
Sbjct: 176 PNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMGHKL 235

Query: 61  ---------------------CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
                                 + K G ++  F V  R+L    +P+ VT+T LIKGLC 
Sbjct: 236 FSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQ 295

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
           + RI EA  ++ ++   G +P V TY++LI+G C+ G+      L+E+M        +  
Sbjct: 296 DGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIK------MGY 349

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
            PD + Y  + DGLCK+G +  A    +K   ++I P+VV + SLI G+C  N  +EA  
Sbjct: 350 PPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALK 409

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +F  M   G++P+V T   +M      G++ E   L   M ++G+ PDA  + TLMD FC
Sbjct: 410 VFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEPDAVAFCTLMDAFC 469

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
              +     +LF  M+ N    D+    ++IN   K + +E A   ++ +L   + P +V
Sbjct: 470 KNMKPTIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIV 529

Query: 340 TYNT 343
           TYNT
Sbjct: 530 TYNT 533



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 41/342 (11%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  F+       K  +  T   ++KR+   G+ P++ TY ILI   C+ GR+   F +  
Sbjct: 248 VVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGIYC 307

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           +IL+    P  VT++SLI G C    +    AL+  +   G  PDV  Y  L++GLC+ G
Sbjct: 308 QILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQG 367

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
             + AL    +        G   +P+ + ++++ DG C+    D+A ++F  M    I P
Sbjct: 368 LMLHALRFSVK------TLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKP 421

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK-------- 248
           DV T T+L+R         E   LF  M   G++P+ V F  +M+  CKN K        
Sbjct: 422 DVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLF 481

Query: 249 ---------------------------MDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
                                      ++EAS+    +++  + PD   YNT++ G+C  
Sbjct: 482 DLMQRNKIPADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSL 541

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            R++ A  +F  ++      +  +  ILI+  CKN +++GAL
Sbjct: 542 RRLDEAARIFEMLKFTPFGPNAVTLTILIHTLCKNSDMDGAL 583



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 149/300 (49%), Gaps = 12/300 (4%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  P++ T+  LIN FCK G +   F +   + +    PD + +++LI G      +   
Sbjct: 173 GPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMG 232

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK---PDA 163
             LF++    G K DV  +++ I+   + G+   A ++++ M         +C+   P+ 
Sbjct: 233 HKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRM---------LCQGISPNV 283

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           +TY+ +  GLC++G + +A  ++ ++    + P VVTY+SLI GFC   +      L+ +
Sbjct: 284 VTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYED 343

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+  G  P+VV + V+++ LCK G M  A R     +   +RP+  V+N+L+DG+C   R
Sbjct: 344 MIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNR 403

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + A ++F  M   G   DV +   L+        ++  L L+  M   G+ P  V + T
Sbjct: 404 CDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEPDAVAFCT 463



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 155/357 (43%), Gaps = 49/357 (13%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L     K  +  +  +L++ +  +G  PD+  Y +L++  CK G +      
Sbjct: 316 PSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALRF 375

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             + L     P+ V F SLI G C  +R  EA  +F  +  +G KPDV T TTL+     
Sbjct: 376 SVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVM 435

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE------------------ 176
            G     L LF  M      F +  +PDA+ + T+ D  CK                   
Sbjct: 436 EGRLKEGLFLFFRM------FKMGLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKI 489

Query: 177 -----------------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                              V++A + F  + +  + PD+VTY ++I G+C     +EA  
Sbjct: 490 PADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAAR 549

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +F  +      PN VT  ++++ LCKN  MD A R++              Y+ ++DG C
Sbjct: 550 IFEMLKFTPFGPNAVTLTILIHTLCKNSDMDGALRIISPS--------IISYSIIIDGLC 601

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
             GRV+ A  +F        + DV +Y ILI G CK   +  A  LY  ML  G++P
Sbjct: 602 KRGRVDEATNIFHQAIDAKILPDVVAYAILIRGCCKVGRLVEAALLYEHMLRNGVKP 658



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 57/330 (17%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +++ M++M   PP V  + +L   L K       L    +     + P++  +N LI+
Sbjct: 338 FALYEDMIKMG-YPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLID 396

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +C++ R      V   +      PD  T T+L++    E R+ E   LF ++   G +P
Sbjct: 397 GWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEP 456

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV-VC-------------------- 159
           D   + TL++  C+     + L LF+ M        + VC                    
Sbjct: 457 DAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQSVEEASKFF 516

Query: 160 --------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
                   +PD +TY+T+  G C    +D+A  +F  +K     P+ VT T LI   C  
Sbjct: 517 NNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFEMLKFTPFGPNAVTLTILIHTLCKN 576

Query: 212 NDWN---------------------------EAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +D +                           EA  +F + +D  + P+VV + +++   C
Sbjct: 577 SDMDGALRIISPSIISYSIIIDGLCKRGRVDEATNIFHQAIDAKILPDVVAYAILIRGCC 636

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           K G++ EA+ L E M++ GV+PD  +   L
Sbjct: 637 KVGRLVEAALLYEHMLRNGVKPDDLLQRAL 666



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 118/235 (50%), Gaps = 8/235 (3%)

Query: 110 FTKLRAFGCKP-DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           F KL   G  P  V  +  +++ L R G    AL+ F  +    G      + D ++ + 
Sbjct: 96  FDKLCRGGTVPFGVSAHGFVLDALFRKGEVTKALD-FHRLVMERG-----FRVDIVSCNK 149

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           I  GL  +  ++ A  +   + D    P+VVT+ +LI GFC   + + A  LF  M  +G
Sbjct: 150 ILKGLSVDQ-IEVASRMLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRG 208

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
           + P+++ ++ +++   K G +    +L    +  GV+ D  V+++ +D +   G +  A 
Sbjct: 209 IAPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAF 268

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +++  M   G   +V +Y ILI G C++  I  A  +Y ++L +G+ P+VVTY++
Sbjct: 269 DVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSS 323


>gi|242061542|ref|XP_002452060.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
 gi|241931891|gb|EES05036.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
          Length = 674

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 167/328 (50%), Gaps = 15/328 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP   +F+ L   L +N+  +  + + +++   G  PD+ +YN +I+CF +         
Sbjct: 353 PPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNTIISCFSEQACADDALK 412

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  +L     PD ++F +++K LC   R  +AA L  K+    C  +  T+  LI+ LC
Sbjct: 413 LLNSML---CKPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTFNILIDSLC 469

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A+ +FE M          C PD +TYS++ +G  ++G    A +LF  M    
Sbjct: 470 QNGQVKDAIEMFELMPKYR------CTPDIVTYSSLINGFSEQGLDKVAFDLFRSMP--- 520

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
              D+ +Y + ++G C A  W++A  L  +M+ +   PN VTFN+++N LC+ G ++ A 
Sbjct: 521 CRADIFSYNATLKGLCMAARWDDAGELIADMVTKDCLPNEVTFNILINSLCQKGLVNRAI 580

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + E M + G+ PD   YN L++G+   G ++ A +   +M    C  D  SY  ++ G 
Sbjct: 581 EVYEQMPKYGITPDIFTYNALINGYSEQGCLDDALKFLSTMP---CEPDTISYNSILKGL 637

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           C+ +  + A  L +EML K   P  VT+
Sbjct: 638 CRAERWKDAEKLVTEMLRKNCTPNEVTF 665



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 173/369 (46%), Gaps = 45/369 (12%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+R +  P  V +F        +N   D  + L +++   G  PD+  Y+ L+N F + G
Sbjct: 245 MIRNNCHPNEV-TFATQIRAFCQNGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHG 303

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           RV     +L  +L     P+ V + + +KGLC   R  E   L  ++    C P+  T++
Sbjct: 304 RVDDALKLLSTML---CRPNTVCYNAALKGLCIAGRWDEVGELIAEMVRKDCPPNDATFS 360

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLIN LC+      A+ + E+M     ++G +  PD ++Y+TI     ++   D A +L 
Sbjct: 361 TLINSLCQNRLAEYAIEVLEQMQ----KYGYM--PDVVSYNTIISCFSEQACADDALKLL 414

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M      PD +++ ++++  C A  W +A  L  +M+ +    N +TFN++++ LC+N
Sbjct: 415 NSML---CKPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTFNILIDSLCQN 471

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGF---------------------------- 278
           G++ +A  + ELM +    PD   Y++L++GF                            
Sbjct: 472 GQVKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQGLDKVAFDLFRSMPCRADIFSYNAT 531

Query: 279 ----CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
               C+  R + A EL   M +  C+ +  ++ ILIN  C+   +  A+ +Y +M   GI
Sbjct: 532 LKGLCMAARWDDAGELIADMVTKDCLPNEVTFNILINSLCQKGLVNRAIEVYEQMPKYGI 591

Query: 335 RPTVVTYNT 343
            P + TYN 
Sbjct: 592 TPDIFTYNA 600



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 159/361 (44%), Gaps = 61/361 (16%)

Query: 40  FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99
            + + S+ + PD YTYN ++   C   +      ++  ++R+   P+ VTF + I+  C 
Sbjct: 207 LRLIASMPVAPDTYTYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNEVTFATQIRAFCQ 266

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM----------- 148
              +  A  L  ++  +GC PDV  Y+TL+NG    G    AL L   M           
Sbjct: 267 NGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKLLSTMLCRPNTVCYNA 326

Query: 149 -------ANGNGEFGVV--------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                  A    E G +        C P+  T+ST+ + LC+    + A E+  +M+   
Sbjct: 327 ALKGLCIAGRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYG 386

Query: 194 INPDVVTYTSLIRGF--------------------------------CYANDWNEAKCLF 221
             PDVV+Y ++I  F                                C A  W +A  L 
Sbjct: 387 YMPDVVSYNTIISCFSEQACADDALKLLNSMLCKPDTISFNAVLKCLCRAERWYDAAELM 446

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            +M+ +    N +TFN++++ LC+NG++ +A  + ELM +    PD   Y++L++GF   
Sbjct: 447 AKMLKEDCHTNEMTFNILIDSLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQ 506

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G    A +LF SM    C  D+FSY   + G C     + A  L ++M++K   P  VT+
Sbjct: 507 GLDKVAFDLFRSMP---CRADIFSYNATLKGLCMAARWDDAGELIADMVTKDCLPNEVTF 563

Query: 342 N 342
           N
Sbjct: 564 N 564



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 155/332 (46%), Gaps = 17/332 (5%)

Query: 12  PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P PP V + NIL   L   +       + + L + G   D  ++N L+  +C+ G +   
Sbjct: 114 PEPPAVITCNILIKKLCARRRLADAERVLEALKTSGA-ADAVSHNTLVAGYCRDGSLWDA 172

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
             VL    R+    + VT+T+LI G C   R+ +A  L   +      PD +TY T++ G
Sbjct: 173 ERVL-EAARASGAANVVTYTALIDGYCRSGRLTDALRLIASM---PVAPDTYTYNTVLKG 228

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LC       A  L  EM   N      C P+ +T++T     C+ G +D+A EL  +M  
Sbjct: 229 LCFAKQWEEAEELMREMIRNN------CHPNEVTFATQIRAFCQNGLLDRAVELLEQMPK 282

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
               PDVV Y++L+ GF      ++A  L   M+    +PN V +N  +  LC  G+ DE
Sbjct: 283 YGCMPDVVIYSTLVNGFSEHGRVDDALKLLSTML---CRPNTVCYNAALKGLCIAGRWDE 339

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
              L+  M++    P+ + ++TL++  C       A E+   M+  G M DV SY  +I+
Sbjct: 340 VGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNTIIS 399

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + +    + AL L + ML K   P  +++N 
Sbjct: 400 CFSEQACADDALKLLNSMLCK---PDTISFNA 428



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 10/163 (6%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD + R  P    + S+N     L     +D    L   + +    P+  T+NILIN  C
Sbjct: 513 FD-LFRSMPCRADIFSYNATLKGLCMAARWDDAGELIADMVTKDCLPNEVTFNILINSLC 571

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
           + G V+    V  ++ +   TPD  T+ +LI G  +E   ++ A  F  L    C+PD  
Sbjct: 572 QKGLVNRAIEVYEQMPKYGITPDIFTYNALINGY-SEQGCLDDALKF--LSTMPCEPDTI 628

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
           +Y +++ GLCR      A  L  EM   N      C P+ +T+
Sbjct: 629 SYNSILKGLCRAERWKDAEKLVTEMLRKN------CTPNEVTF 665


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 166/339 (48%), Gaps = 7/339 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+ +   P      +++ G   K K  D    L  R+  +G  P L+ YN LIN  
Sbjct: 318 VMDEMIELGFVPTEAALSSLVEGLRRKGKVVDA-FDLVNRVKKVGAMPSLFVYNALINSL 376

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G+     ++   +       + VT++ LI   C   ++  A     K+   G K  V
Sbjct: 377 CKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITV 436

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           + Y +LING C+ G+   A++ F+EM +         KP  ++Y+++  G C +G + +A
Sbjct: 437 YPYNSLINGHCKLGNLSAAVSFFDEMIDKG------LKPTVVSYTSLISGYCNKGKLHEA 490

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L+ +M  + I P+  T+T+LI     AN   +A  LF EM++Q + PN VT+NV++  
Sbjct: 491 FRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEG 550

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G   +A  LL  M+Q G+ PD   Y  L+   C TGRV  AK+    +       +
Sbjct: 551 HCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLN 610

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              Y  L++GYCK   +  AL +  EM+ +G+   +V Y
Sbjct: 611 EMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCY 649



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 164/329 (49%), Gaps = 8/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +   +   LAK +  D VL LF  + S+G+ PD+Y Y  +I  FC++   +    +
Sbjct: 191 PQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEM 250

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + R+  S    + V +  LI GLC   R+ EA  +   L   G      TY TL+ GLC+
Sbjct: 251 IQRMESSDL--NVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCK 308

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                V   + +EM     E G V  P     S++ +GL ++G V  A +L  ++K    
Sbjct: 309 VQEFEVGAGVMDEMI----ELGFV--PTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGA 362

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +  Y +LI   C    ++EA+ LF EM ++G+  N VT++++++  C+ GK+D A  
Sbjct: 363 MPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIH 422

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  MI  G++     YN+L++G C  G ++ A   F  M   G    V SY  LI+GYC
Sbjct: 423 FLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYC 482

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              ++  A  LY EM  KGI P   T+ T
Sbjct: 483 NKGKLHEAFRLYHEMTGKGIAPNTYTFTT 511



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 154/329 (46%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L   L +         LF  +    + P+  TYN++I   CK G     F +
Sbjct: 504 PNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFEL 563

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++++    PD  T+  LI  LC+  R+ EA      L     K +   Y+ L++G C+
Sbjct: 564 LNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCK 623

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL +  EM     +  +VC      Y+ + DG  KE        L   M D+ +
Sbjct: 624 EGRLRDALGVCREMVKRGVDMDLVC------YAVLIDGTIKEQDTSAVFGLLKNMHDQRL 677

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD V YTS+I G+  A    +A  ++  M+D+G  PN+VT+  ++NELCK G MD+A  
Sbjct: 678 RPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAEL 737

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+     P+   Y   +D     G + +A +L   M   G + +  SY IL+ G+C
Sbjct: 738 LWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDM-LKGLLANTVSYNILVRGFC 796

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +E A  L  EM+   I P  +TY+T
Sbjct: 797 KLGRVEEATKLLDEMIDNAIFPDCITYST 825



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 177/377 (46%), Gaps = 41/377 (10%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +FD ML  +  P  V ++N++     K  +      L  ++   GL PD YTY  LI+
Sbjct: 526 FRLFDEMLEQNMMPNEV-TYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLIS 584

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  GRV      +  + R  F  + + +++L+ G C E R+ +A  +  ++   G   
Sbjct: 585 SLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDM 644

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D+  Y  LI+G  +   T     L + M +         +PD + Y+++ DG  K G V 
Sbjct: 645 DLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQR------LRPDKVIYTSMIDGYSKAGSVK 698

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM---------------- 224
           KA  ++  M DE   P++VTYT+LI   C A   ++A+ L+ EM                
Sbjct: 699 KAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFL 758

Query: 225 --------MDQGVQ----------PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
                   M++ VQ           N V++N+++   CK G+++EA++LL+ MI   + P
Sbjct: 759 DHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFP 818

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y+T++   C  G ++ A E + +M + G   D  +Y  LI G C   E+  A  L 
Sbjct: 819 DCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELR 878

Query: 327 SEMLSKGIRPTVVTYNT 343
            +M+ +G++P   T+ +
Sbjct: 879 DDMIRRGVKPNQATHKS 895



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 162/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L K+  +D    LFK +   GL  +  TY+ILI+ FC+ G++      
Sbjct: 364 PSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHF 423

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LG+++ +        + SLI G C    +  A + F ++   G KP V +YT+LI+G C 
Sbjct: 424 LGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCN 483

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L+ EM  G G       P+  T++T+   L +   +  A  LF +M ++N+
Sbjct: 484 KGKLHEAFRLYHEMT-GKG-----IAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNM 537

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VTY  +I G C   +  +A  L  +M+ +G+ P+  T+  +++ LC  G++ EA +
Sbjct: 538 MPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKK 597

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            ++ + +   + +   Y+ L+ G+C  GR+  A  +   M   G   D+  Y +LI+G  
Sbjct: 598 FIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTI 657

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K ++      L   M  + +RP  V Y +
Sbjct: 658 KEQDTSAVFGLLKNMHDQRLRPDKVIYTS 686



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 163/358 (45%), Gaps = 41/358 (11%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++IL     +    DT +    ++   G+   +Y YN LIN  CK+G +S        +
Sbjct: 403 TYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEM 462

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     P  V++TSLI G C + ++ EA  L+ ++   G  P+ +T+TTLI+ L R    
Sbjct: 463 IDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRM 522

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LF+EM   N        P+ +TY+ + +G CKEG   KA EL  +M  + + PD 
Sbjct: 523 TDAFRLFDEMLEQN------MMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDT 576

Query: 199 VTY-----------------------------------TSLIRGFCYANDWNEAKCLFIE 223
            TY                                   ++L+ G+C      +A  +  E
Sbjct: 577 YTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCRE 636

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
           M+ +GV  ++V + V+++   K         LL+ M    +RPD  +Y +++DG+   G 
Sbjct: 637 MVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGS 696

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           V +A  ++  M   GC  ++ +Y  LIN  CK   ++ A  L+ EML     P  VTY
Sbjct: 697 VKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTY 754



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 152/315 (48%), Gaps = 8/315 (2%)

Query: 5   DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK 64
           D + R H     +C   +L G   + +  D  L + + +   G+  DL  Y +LI+   K
Sbjct: 600 DDLHREHFKLNEMCYSALLHGYCKEGRLRDA-LGVCREMVKRGVDMDLVCYAVLIDGTIK 658

Query: 65  MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT 124
               S  F +L  +      PD V +TS+I G      + +A  ++  +   GC P++ T
Sbjct: 659 EQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVT 718

Query: 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
           YTTLIN LC+ G    A  L++EM   N        P+ +TY    D L +EG ++KA +
Sbjct: 719 YTTLINELCKAGLMDKAELLWKEMLVSNS------TPNHVTYCCFLDHLAREGSMEKAVQ 772

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           L   M  + +  + V+Y  L+RGFC      EA  L  EM+D  + P+ +T++ I+ + C
Sbjct: 773 LHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCC 831

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           + G +D A    + M+  G++PD   YN L+ G C+ G + +A EL   M   G   +  
Sbjct: 832 RRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQA 891

Query: 305 SYGILINGYCKNKEI 319
           ++  L +G  +   I
Sbjct: 892 THKSLSHGASRKFSI 906



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 147/324 (45%), Gaps = 25/324 (7%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           SF IL   L     +    SL + L   G       +  L++CF K   +S         
Sbjct: 107 SFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKCDFIS--------- 157

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                   ++ F  LI+    E R+ ++  +F  +R     P V T   ++NGL +    
Sbjct: 158 --------SLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRV 209

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
            + L LF E+ +     G+  +PD   Y  +    C+     KAKE+  +M+  ++N  V
Sbjct: 210 DMVLVLFGEILS----MGI--RPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLN--V 261

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           V Y  LI G C      EA  +   ++ +G+  + VT+  ++  LCK  + +  + +++ 
Sbjct: 262 VVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDE 321

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           MI++G  P  +  ++L++G    G+V  A +L   ++  G M  +F Y  LIN  CK+ +
Sbjct: 322 MIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGK 381

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
            + A  L+ EM  KG+    VTY+
Sbjct: 382 FDEAELLFKEMGEKGLCANDVTYS 405



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           LI+ +       ++  +F  M    + P V T   ++N L K  ++D    L   ++ +G
Sbjct: 164 LIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMG 223

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           +RPD  +Y  ++  FC      +AKE+   MES+    +V  Y +LI+G CKNK +  A+
Sbjct: 224 IRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDL--NVVVYNVLIHGLCKNKRVWEAV 281

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
            + + ++ KG+  + VTY T
Sbjct: 282 EIKNGLIQKGLTASEVTYCT 301


>gi|218186396|gb|EEC68823.1| hypothetical protein OsI_37392 [Oryza sativa Indica Group]
          Length = 1370

 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 164/322 (50%), Gaps = 6/322 (1%)

Query: 22   ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
            +L   L   +  +  L L +     G  P +  YN+LI+ +C+ G +  G ++LG +   
Sbjct: 966  VLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETK 1025

Query: 82   CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
             F P  VT+ SLI  L  +  + +  +LF ++R  G  P+V  Y ++I+ LC       A
Sbjct: 1026 GFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQA 1085

Query: 142  LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
            + + ++M      F   C PD IT++T+  GLC EG V KA+    +     +NP+ ++Y
Sbjct: 1086 MVILKQM------FASGCDPDIITFNTLMTGLCHEGHVRKAEHFLREAIRRELNPNQLSY 1139

Query: 202  TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            T LI GFC   +   A  L +EMM +G  P+VVTF  +++ L   GK+ EA  + E M +
Sbjct: 1140 TPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTE 1199

Query: 262  IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
              V PD ++YN L+ G C    +  AK +   M       D F Y  LI+G+ +++ +  
Sbjct: 1200 RQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGD 1259

Query: 322  ALSLYSEMLSKGIRPTVVTYNT 343
            A  ++  M  KG+ P +V+ N 
Sbjct: 1260 ARKIFEFMEHKGVCPDIVSCNA 1281



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 147/301 (48%), Gaps = 6/301 (1%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V  +N+L     +       L L   + + G  P L TY  LIN   K G +     +
Sbjct: 994  PHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSL 1053

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               + +  F+P+   + S+I  LC      +A  +  ++ A GC PD+ T+ TL+ GLC 
Sbjct: 1054 FLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLMTGLCH 1113

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             GH   A +   E             P+ ++Y+ +  G C  G +  A +L ++M     
Sbjct: 1114 EGHVRKAEHFLREAIRRE------LNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGH 1167

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             PDVVT+ +LI G   A   +EA  +  +M ++ V P+V  +NV+++ LCK   +  A  
Sbjct: 1168 TPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKN 1227

Query: 255  LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            +LE M++  V+PD  VY TL+DGF  +  +  A+++F  ME  G   D+ S   +I GYC
Sbjct: 1228 ILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYC 1287

Query: 315  K 315
            +
Sbjct: 1288 Q 1288



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 135/323 (41%), Gaps = 41/323 (12%)

Query: 56   NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
            N L+    +  R   G  +   +L      D  +   L++GLC E R+ E   L      
Sbjct: 930  NHLLKLLVEQRRWDDGRKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWG 989

Query: 116  FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
             GC P V  Y  LI+G CR G     L L  EM            P  +TY ++ + L K
Sbjct: 990  AGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKG------FLPTLVTYGSLINWLGK 1043

Query: 176  EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
            +G ++K   LFL+M+    +P+V  Y S+I   C      +A  +  +M   G  P+++T
Sbjct: 1044 KGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIIT 1103

Query: 236  FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
            FN +M  LC  G + +A   L   I+  + P+   Y  L+ GFC+ G +  A +L V M 
Sbjct: 1104 FNTLMTGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMM 1163

Query: 296  SNGCMRDVFSYG-----------------------------------ILINGYCKNKEIE 320
              G   DV ++G                                   +LI+G CK + + 
Sbjct: 1164 GRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLP 1223

Query: 321  GALSLYSEMLSKGIRPTVVTYNT 343
             A ++  EML K ++P    Y T
Sbjct: 1224 AAKNILEEMLEKNVQPDEFVYAT 1246



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 6/238 (2%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P V  +N +   L   +     + + K++ + G  PD+ T+N L+   C  G V      
Sbjct: 1064 PNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLMTGLCHEGHVRKAEHF 1123

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L   +R    P+ +++T LI G C    +M A+ L  ++   G  PDV T+  LI+GL  
Sbjct: 1124 LREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVV 1183

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
             G    AL + E+M            PD   Y+ +  GLCK+  +  AK +  +M ++N+
Sbjct: 1184 AGKVSEALIVREKMTERQ------VFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNV 1237

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
             PD   Y +LI GF  + +  +A+ +F  M  +GV P++V+ N ++   C+ G M EA
Sbjct: 1238 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEA 1295



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 6/213 (2%)

Query: 15   PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
            P + +FN L   L    H        +      L P+  +Y  LI+ FC  G +     +
Sbjct: 1099 PDIITFNTLMTGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDL 1158

Query: 75   LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            L  ++    TPD VTF +LI GL    ++ EA  +  K+      PDV  Y  LI+GLC+
Sbjct: 1159 LVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 1218

Query: 135  TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  A N+ EEM   N       +PD   Y+T+ DG  +   +  A+++F  M+ + +
Sbjct: 1219 KRMLPAAKNILEEMLEKN------VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGV 1272

Query: 195  NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227
             PD+V+  ++I+G+C     +EA      M  Q
Sbjct: 1273 CPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKQ 1305


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 169/341 (49%), Gaps = 37/341 (10%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNK-HYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + YM  M   PP V S N+L   L KN    D  L +F+ + + G  PD YTY  LIN  
Sbjct: 143 YRYMREM-GIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGL 201

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C++G++     +   +     +P  VT+TSLI GLC    +  A  L  ++ + G KP+V
Sbjct: 202 CRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNV 261

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           FTY++L++G C++G +  AL L + M +          P+ ITYST+  GLCKEG + +A
Sbjct: 262 FTYSSLMDGHCKSGCSSRALELLDMMVSRRH------LPNMITYSTLVHGLCKEGKLQEA 315

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+  +MK + + PD   Y  +I GFC    ++EA     EM+  G+ PN +T+++    
Sbjct: 316 VEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSL---- 371

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
                                      ++N ++ G C T   NRA +L++SM + G   D
Sbjct: 372 ------------------------HVRIHNIVVQGLC-TEHPNRAFQLYLSMRTRGISID 406

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++  L+N +C   ++  A  L  EM+  G  P  VT+N 
Sbjct: 407 AKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNA 447



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 140/259 (54%), Gaps = 7/259 (2%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI-VALN 143
           P   ++ ++   L  E+++  A   +  +R  G  P V +   LI  LC+   T+  AL 
Sbjct: 118 PSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALR 177

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           +F EM N        C PD+ TY T+ +GLC+ G + +AKELF +M+ +  +P VVTYTS
Sbjct: 178 IFREMPNRG------CPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTS 231

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           LI G C + D + A  L  EM  +G++PNV T++ +M+  CK+G    A  LL++M+   
Sbjct: 232 LIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRR 291

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
             P+   Y+TL+ G C  G++  A E+   M+  G   D   YG +I+G+C   +   A 
Sbjct: 292 HLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAA 351

Query: 324 SLYSEMLSKGIRPTVVTYN 342
           +   EM+  GI P  +T++
Sbjct: 352 NFLDEMVLGGISPNRLTWS 370



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 134/263 (50%), Gaps = 17/263 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L ++K  D+ + L + + S G+ P+++TY+ L++  CK G  S    +
Sbjct: 224 PTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALEL 283

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++     P+ +T+++L+ GLC E ++ EA  +  +++  G +PD   Y  +I+G C 
Sbjct: 284 LDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCD 343

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYS-------TITDGLCKEGFVDKAKELFL 187
                 A N  +EM  G         P+ +T+S        +  GLC E   ++A +L+L
Sbjct: 344 ICKFHEAANFLDEMVLGG------ISPNRLTWSLHVRIHNIVVQGLCTE-HPNRAFQLYL 396

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
            M+   I+ D  T+ SL+  FC   D ++A  L  EM+  G  P+ VT+N ++       
Sbjct: 397 SMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRR 456

Query: 248 KMDEASRLLELMIQIGVR---PD 267
           K+ E++ L+++ + +  R   PD
Sbjct: 457 KVRESAELVQVELMVEHRKMGPD 479



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 127/266 (47%), Gaps = 23/266 (8%)

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAF---GCKPDVFTYTTLINGLCRTGHTIVALN 143
           +     LIK   AE  I +A  +F    A    G +    T++ +I+ L    H  +A  
Sbjct: 15  SAQVAQLIK---AERDIQKAIVIFDSATAEYTNGFRHSHQTFSLMISRLVSANHFRLAEE 71

Query: 144 LF----EEMANGNGE-FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
           L     EE  N   + F  +C+     Y  +   L        A  +F KMK+    P  
Sbjct: 72  LLCRMKEEKCNITEDIFLSICR----AYGRVHKPL-------DAVRVFRKMKEYECEPSQ 120

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN-GKMDEASRLLE 257
            +Y ++       N    A   +  M + G+ P+V + NV++  LCKN G MD A R+  
Sbjct: 121 KSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFR 180

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M   G  PD+  Y TL++G C  G++  AKELF  ME+  C   V +Y  LI+G C++K
Sbjct: 181 EMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSK 240

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
           +++ A+ L  EM SKGI+P V TY++
Sbjct: 241 DLDSAIRLLEEMASKGIKPNVFTYSS 266



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 7/262 (2%)

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
           F     TF+ +I  L + +    A  L  +++   C      + ++     R    + A+
Sbjct: 46  FRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAV 105

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            +F +M          C+P   +Y T+   L  E  +  A   +  M++  I P V +  
Sbjct: 106 RVFRKMKEYE------CEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLN 159

Query: 203 SLIRGFCY-ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            LI+  C  +   + A  +F EM ++G  P+  T+  ++N LC+ GK+ EA  L + M  
Sbjct: 160 VLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMET 219

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
               P    Y +L+ G C +  ++ A  L   M S G   +VF+Y  L++G+CK+     
Sbjct: 220 KACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSR 279

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           AL L   M+S+   P ++TY+T
Sbjct: 280 ALELLDMMVSRRHLPNMITYST 301


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 177/388 (45%), Gaps = 68/388 (17%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN +   L +    D    +FK + + G+ PD+Y+Y+ILI+ FC+ GRV     V   + 
Sbjct: 283 FNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMR 342

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
            S   P+  +++ LI G C E R+ +A  +F +++  G  PDV++Y+ LI+G CR G   
Sbjct: 343 NSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMD 402

Query: 140 VALNLFEEM-------------------------ANGNGEFGVVCK----PDAI------ 164
            A+  +EEM                         AN   EF ++ K    PD I      
Sbjct: 403 SAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHIL 462

Query: 165 -----------------------------TYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                                        +Y+     +C+    +KA +L   M   N+ 
Sbjct: 463 SIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVL 522

Query: 196 PDVVTYTSLIRGFCYANDWNEAKC--LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           PDVV Y++LI   C+A   N  K   LFI+M   G+  NV T+ +++N    + KMD A 
Sbjct: 523 PDVVNYSTLIS--CFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAY 580

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           RL + M +  V PD   Y +L+ GFC TG + RA+ LF  M   GC  +V +Y   IN Y
Sbjct: 581 RLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEY 640

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            K  +   A  LY +M  +G+ P  + Y
Sbjct: 641 LKLNKNNQAHKLYEKMKERGVYPDQILY 668



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 178/369 (48%), Gaps = 51/369 (13%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK-------MGRVS 69
           + S N L  CL ++   D V  LF+ L   G  P+++TY I++N FC+       + R S
Sbjct: 171 IMSCNFLLKCLVEDNRVDGVRLLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRAS 230

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLC------AESRIM------------------- 104
               +LG+I  S  TP+ VT+ + IKGLC         R++                   
Sbjct: 231 E---ILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVI 287

Query: 105 ----------EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
                     EA+ +F +++  G  PDV++Y+ LI+G CR G    A  +F+EM N    
Sbjct: 288 YGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNS--- 344

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
            G++  P+  +YS + DG CKEG VDKA E+F +MK+  I PDV +Y+ LI GFC   D 
Sbjct: 345 -GIL--PNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDM 401

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           + A   + EM      P+   +  ++    K+ +   A +   +M ++G+ PD    N +
Sbjct: 402 DSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHI 461

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +  +C     N+A  L    + NG   + +SY   I+  C+    E AL L   ML + +
Sbjct: 462 LSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNV 521

Query: 335 RPTVVTYNT 343
            P VV Y+T
Sbjct: 522 LPDVVNYST 530



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/385 (29%), Positives = 167/385 (43%), Gaps = 65/385 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S++IL     K    D  L +F+ + + G+ PD+Y+Y+ILI+ FC+ G +      
Sbjct: 348 PNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKF 407

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +  + F+P A  + SLIKG     +   A   F  ++  G  PD      +++  CR
Sbjct: 408 WEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCR 467

Query: 135 TGHTIVALNLFEEMANGNGEFG---------VVCK--------------------PDAIT 165
                 AL L E+       F           +C+                    PD + 
Sbjct: 468 KPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVN 527

Query: 166 YSTITDGLCKEGFVDKAKELFLKM-----------------------------------K 190
           YST+     K    +KA  LF+KM                                   K
Sbjct: 528 YSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMK 587

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           +  + PD + YTSL+ GFC   +   A+ LF EM  +G  PNVVT+   +NE  K  K +
Sbjct: 588 ESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNN 647

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG-CMRDVFSYGIL 309
           +A +L E M + GV PD  +Y  L+  FC TG +NRA+ LF  M+  G C  +V  Y  L
Sbjct: 648 QAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCL 707

Query: 310 INGYCKNKEIEGALSLYSEMLSKGI 334
           IN Y K  + + A  LY EM +KG+
Sbjct: 708 INSYIKLNKRDQAEKLYEEMRAKGL 732



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 151/290 (52%), Gaps = 8/290 (2%)

Query: 55  YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR 114
           +++LI  F     +     V  R        + ++   L+K L  ++R+     LF  L 
Sbjct: 139 FDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEVLI 198

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG---NGEFGVVCKPDAITYSTITD 171
            FG +P++ TYT ++N  CR     V +    E+      +GE      P+ +TY T   
Sbjct: 199 KFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGE-----TPNVVTYGTYIK 253

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           GLCK G    A  L   +  +N   +   + ++I G C     +EA  +F EM + G+ P
Sbjct: 254 GLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILP 313

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           +V +++++++  C+ G++D+AS + + M   G+ P+   Y+ L+DGFC  GRV++A E+F
Sbjct: 314 DVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVF 373

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             M+++G + DV+SY ILI+G+C+  +++ A+  + EM S    P+   Y
Sbjct: 374 EEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNY 423



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 129/273 (47%), Gaps = 7/273 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+N     + +    +  L L   +    + PD+  Y+ LI+CF K        ++  ++
Sbjct: 492 SYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKM 551

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +   T +  T+T LI    ++ ++  A  LF  ++     PD   YT+L+ G C TG  
Sbjct: 552 TKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEM 611

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LF+EM+         C P+ +TY+   +   K    ++A +L+ KMK+  + PD 
Sbjct: 612 TRARALFDEMSREG------CSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQ 665

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKNGKMDEASRLLE 257
           + YT LI  FC   + N A+ LF EM  +G   PNVV +  ++N   K  K D+A +L E
Sbjct: 666 ILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYE 725

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
            M   G+    S   ++ + +C   +V +  +L
Sbjct: 726 EMRAKGLSRLCSSEGSVSESWCCRHQVLKTGKL 758



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 40/230 (17%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +++ L  C AK  + +  + LF ++  +G+  ++ TY ILIN F    ++   + +
Sbjct: 523 PDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRL 582

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN---- 130
              +  S   PD + +TSL+ G C    +  A ALF ++   GC P+V TYT  IN    
Sbjct: 583 FKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLK 642

Query: 131 -------------------------------GLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                                            C TG    A  LF+EM          C
Sbjct: 643 LNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGR-----C 697

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
            P+ + Y+ + +   K    D+A++L+ +M+ + ++    +  S+   +C
Sbjct: 698 TPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGLSRLCSSEGSVSESWC 747



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 98/218 (44%), Gaps = 39/218 (17%)

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
           + +  +         ++ A  +F++ KD+ I  ++++   L++     N  +  + LF  
Sbjct: 137 VVFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEV 196

Query: 224 MMDQGVQPNVVTFNVIMNELCK----NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           ++  G +PN+ T+ ++MN  C+    +  +  AS +L  +   G  P+   Y T + G C
Sbjct: 197 LIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYIKGLC 256

Query: 280 LTG-------------RVNR----------------------AKELFVSMESNGCMRDVF 304
             G             R N+                      A E+F  M+++G + DV+
Sbjct: 257 KVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVY 316

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           SY ILI+G+C+   ++ A  ++ EM + GI P + +Y+
Sbjct: 317 SYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYS 354



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M R   SP  V     +   L  NK+ +    L++++   G++PD   Y +LI  F
Sbjct: 617 LFDEMSREGCSPNVVTYTCFINEYLKLNKN-NQAHKLYEKMKERGVYPDQILYTMLIAAF 675

Query: 63  CKMGRVSPGFVVLGRILRS--CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           C  G ++    +   + +   C TP+ V +T LI      ++  +A  L+ ++RA G
Sbjct: 676 CNTGEMNRAEALFDEMKQEGRC-TPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKG 731


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F  L   L +    D   SL++++      P++  Y  LI  F K GR   G  +
Sbjct: 480 PDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKI 539

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++    +PD +   S +  +     + +  ALF +++A G  PDV +Y+ LI+GL +
Sbjct: 540 YKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVK 599

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G +     LF EM             D + Y+T+ DG CK G VDKA +L  +MK + +
Sbjct: 600 AGFSRETYKLFYEMKEQGLHL------DVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGL 653

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P VVTY S++ G    +  +EA  LF E    GV  NVV ++ +++   K G++DEA  
Sbjct: 654 QPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYL 713

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +LE ++Q G+ P++  +N L+D       ++ A+  F +M++  C  +  +Y I+ING C
Sbjct: 714 ILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLC 773

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             ++   A   + EM  +G++P  +TY T
Sbjct: 774 MIRKFNKAFVFWQEMQKQGLKPNNITYTT 802



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 167/336 (49%), Gaps = 7/336 (2%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           L ++ S P V ++N +         +D   SL +R    G  P +  YN ++ C  + G+
Sbjct: 334 LDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGK 393

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           V     +    +R    P+  T+  LI  LC    +  A  +   ++  G  P++ T   
Sbjct: 394 VEEALRIHDE-MRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNI 452

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           +I+ LC+      A ++F  + +       VC PD+ T+ ++ DGL + G VD A  L+ 
Sbjct: 453 MIDRLCKAQKLDEACSIFLGLDHK------VCSPDSRTFCSLIDGLGRRGRVDDAYSLYE 506

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           KM D +  P+VV YTSLI+ F       +   ++ EM+ +G  P+++  N  M+ + K G
Sbjct: 507 KMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAG 566

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           ++++   L E +   G+ PD   Y+ L+ G    G      +LF  M+  G   DV +Y 
Sbjct: 567 EVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYN 626

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +I+G+CK+ +++ A  L  EM +KG++PTVVTY +
Sbjct: 627 TVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGS 662



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 160/346 (46%), Gaps = 13/346 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNIL---FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNI 57
           + +++ ML     P  V   +++   F C  K   +     ++K +   G  PDL   N 
Sbjct: 502 YSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGH----KIYKEMVHRGCSPDLMLLNS 557

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
            ++C  K G V  G  +   I      PD  +++ LI GL       E   LF +++  G
Sbjct: 558 YMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQG 617

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
              DV  Y T+I+G C++G    A  L EEM           +P  +TY ++ DGL K  
Sbjct: 618 LHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKG------LQPTVVTYGSVVDGLAKID 671

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            +D+A  LF + K   ++ +VV Y+SLI GF      +EA  +  E+M +G+ PN  T+N
Sbjct: 672 RLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWN 731

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
            +++ L K  ++DEA    + M  +   P+A  Y+ +++G C+  + N+A   +  M+  
Sbjct: 732 CLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQ 791

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   +  +Y  +I G  K   +  A  L+    + G  P    YN 
Sbjct: 792 GLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNA 837



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 158/337 (46%), Gaps = 7/337 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+R     P   ++  L G L+     D +L+LF ++  IG   +++ +  L+  F + G
Sbjct: 193 MMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREG 252

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           R+     +L  +  + FT D V +   I       ++  A   F +++A G  PD  TYT
Sbjct: 253 RIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYT 312

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           TLI  LC+      A+ LFEE+            P    Y+T+  G    G  D+A  L 
Sbjct: 313 TLIGVLCKARRLDEAVELFEELDLNRS------VPCVYAYNTMIMGYGSAGKFDEAYSLL 366

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            + K +   P V+ Y  ++          EA  +  EM  Q   PN+ T+N++++ LCK 
Sbjct: 367 ERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMR-QDAAPNLTTYNILIDMLCKA 425

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G+++ A ++ + M + G+ P+    N ++D  C   +++ A  +F+ ++   C  D  ++
Sbjct: 426 GELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTF 485

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             LI+G  +   ++ A SLY +ML     P VV Y +
Sbjct: 486 CSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTS 522



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 149/308 (48%), Gaps = 6/308 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S++IL   L K         LF  +   GL  D+  YN +I+ FCK G+V   + +
Sbjct: 585 PDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQL 644

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P  VT+ S++ GL    R+ EA  LF + ++ G   +V  Y++LI+G  +
Sbjct: 645 LEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGK 704

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + EE+            P++ T++ + D L K   +D+A+  F  MK+   
Sbjct: 705 VGRIDEAYLILEELMQKG------LTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKC 758

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ +TY+ +I G C    +N+A   + EM  QG++PN +T+  ++  L K G + EA  
Sbjct: 759 SPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARG 818

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L +     G  PD++ YN +++G     +   A  +F      GC  +  +  +L++   
Sbjct: 819 LFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALH 878

Query: 315 KNKEIEGA 322
           K   +E A
Sbjct: 879 KADCLEQA 886



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 153/321 (47%), Gaps = 6/321 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +   N    C+ K    +   +LF+ + + GL PD+ +Y+ILI+   K G     + +
Sbjct: 550 PDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKL 609

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +       D + + ++I G C   ++ +A  L  +++  G +P V TY ++++GL +
Sbjct: 610 FYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAK 669

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LFEE  +   +  VV       YS++ DG  K G +D+A  +  ++  + +
Sbjct: 670 IDRLDEAYMLFEEAKSIGVDLNVV------IYSSLIDGFGKVGRIDEAYLILEELMQKGL 723

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+  T+  L+     A + +EA+  F  M +    PN +T+++++N LC   K ++A  
Sbjct: 724 TPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFV 783

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + M + G++P+   Y T++ G    G V  A+ LF   +++G + D   Y  +I G  
Sbjct: 784 FWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLS 843

Query: 315 KNKEIEGALSLYSEMLSKGIR 335
              +   A  ++ E   KG R
Sbjct: 844 SANKAMDAYIVFEETRLKGCR 864



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 149/323 (46%), Gaps = 7/323 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N     +A+ ++ D +  + + ++  G     +    L+  F K  ++   F V+  + 
Sbjct: 136 YNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMR 195

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           +  F P    +T+LI  L A +R      LF +++  G + +V  +TTL+    R G   
Sbjct: 196 KFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRID 255

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL+L +EM + +         D + Y+   D   K G VD A + F +MK + + PD V
Sbjct: 256 AALSLLDEMKSNS------FTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDV 309

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TYT+LI   C A   +EA  LF E+      P V  +N ++      GK DEA  LLE  
Sbjct: 310 TYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQ 369

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + G  P    YN ++      G+V  A  +   M  +    ++ +Y ILI+  CK  E+
Sbjct: 370 KRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAA-PNLTTYNILIDMLCKAGEL 428

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
           E AL +   M   G+ P ++T N
Sbjct: 429 EAALKVQDTMKEAGLFPNIMTVN 451



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 6/239 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  +   LAK    D    LF+   SIG+  ++  Y+ LI+ F K+GR+   +++
Sbjct: 655 PTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLI 714

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +++   TP++ T+  L+  L     I EA   F  ++   C P+  TY+ +INGLC 
Sbjct: 715 LEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCM 774

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A   ++EM           KP+ ITY+T+  GL K G V +A+ LF + K    
Sbjct: 775 IRKFNKAFVFWQEMQKQG------LKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGG 828

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
            PD   Y ++I G   AN   +A  +F E   +G + N  T  V+++ L K   +++A+
Sbjct: 829 VPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQAA 887



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
             L+  F  ++   EA  + IEMM +   +P    +  ++  L    + D    L   M 
Sbjct: 172 VELVASFVKSHKLKEAFGV-IEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQ 230

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           +IG   +  ++ TL+  F   GR++ A  L   M+SN    D+  Y + I+ + K  +++
Sbjct: 231 EIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVD 290

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A   + EM ++G+ P  VTY T
Sbjct: 291 MAWKFFHEMKAQGLVPDDVTYTT 313


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 169/334 (50%), Gaps = 6/334 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + + H    P  +   +   L + +++  V   +K +   G    LY +NIL+  FCK G
Sbjct: 91  LTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEG 150

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P  V+F +LI G      + E   L + + A G +PDV+TY+
Sbjct: 151 EMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYS 210

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGLC+ G    A  LF EM +     G+V  P+ +T++T+  G CK   VD A E++
Sbjct: 211 ILINGLCKEGKLDEANELFNEMLDN----GLV--PNGVTFTTLIHGHCKNEKVDLAMEIY 264

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  + ++PD++TY +LI G C   +  +   L  EM+  G++P+ +++  +++  CK 
Sbjct: 265 KQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKE 324

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G ++ A  L   MIQ  +R D   Y  L+   C  GR   A+++   M S G   D  +Y
Sbjct: 325 GDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTY 384

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            ++IN +CK ++ + A  L  EM   G  P VVT
Sbjct: 385 TMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 133/252 (52%), Gaps = 6/252 (2%)

Query: 90  FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149
           F  L++  C E  +  A ++F  +  +G +P V ++ TLING  + G       L   M 
Sbjct: 139 FNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMH 198

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
               +      PD  TYS + +GLCKEG +D+A ELF +M D  + P+ VT+T+LI G C
Sbjct: 199 ASGAQ------PDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHC 252

Query: 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269
                + A  ++ +M+ QG+ P+++T+N ++  LCK G++ +   L++ MI  G++PD  
Sbjct: 253 KNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKI 312

Query: 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329
            Y TL+DG C  G +  A EL   M       D  +Y  LI+  C+      A  +  EM
Sbjct: 313 SYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREM 372

Query: 330 LSKGIRPTVVTY 341
           LS G++P   TY
Sbjct: 373 LSVGLKPDNGTY 384



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 98/178 (55%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           ++ +    CKEG +  A+ +F  +    + P VV++ +LI G+    D +E   L   M 
Sbjct: 139 FNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMH 198

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
             G QP+V T+++++N LCK GK+DEA+ L   M+  G+ P+   + TL+ G C   +V+
Sbjct: 199 ASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVD 258

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A E++  M S G   D+ +Y  LI G CK  E++    L  EM+  G++P  ++Y T
Sbjct: 259 LAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTT 316



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVCK------PDAITYSTI 169
           + +Y T+I+ LC     I A +L + + +  G+      F  + +       D   +S +
Sbjct: 13  LHSYCTMIHLLCTHQMLIEAKSLIQVVVSRKGKDSASDVFEAILETKGTQISDFYVFSGL 72

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                + GFV  A + F   K   I     T   ++        +      + E+++ G 
Sbjct: 73  MIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGY 132

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
             ++  FN++M   CK G+M  A  + + + + G+RP    +NTL++G+   G ++    
Sbjct: 133 PASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFR 192

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           L  +M ++G   DV++Y ILING CK  +++ A  L++EML  G+ P  VT+ T
Sbjct: 193 LKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTT 246



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+ M+   P   S+  L     K    +  L L  ++    +  D   Y  LI+C 
Sbjct: 298 LIDEMI-MNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCL 356

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C+ GR      +L  +L     PD  T+T +I   C +     A+ L  +++  G  P V
Sbjct: 357 CREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVPGV 416

Query: 123 FT 124
            T
Sbjct: 417 VT 418


>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 823

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 158/294 (53%), Gaps = 6/294 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           PD+ TYNILIN  CK G+      +L    +       +++  LI+  C       A+ L
Sbjct: 343 PDIATYNILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQAYCKSKEYDIASKL 402

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
             +L   GCKPD+ TY  LI+GL  +GH   A+N+  ++ +     GV   PDA  Y+ +
Sbjct: 403 LLQLAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDR----GV--SPDAAIYNML 456

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
             GLCK G    AK LF +M D +I PD   Y +LI GF  + D++EA+ +F   +++GV
Sbjct: 457 MSGLCKTGRFLPAKLLFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKGV 516

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           + +VV  N ++   C++G +DEA   +  M +  + PD   Y+T++DG+     +  A +
Sbjct: 517 KVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIK 576

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +F  ME N C  +V +Y  LING+C   +   A   + EM S+ + P VVTY T
Sbjct: 577 IFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDLVPNVVTYTT 630



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 185/371 (49%), Gaps = 31/371 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           I+DY++ ++ S P V + N L   + K++  +    ++  +   G   D Y+  I++   
Sbjct: 156 IYDYVVELYDSVPDVIACNALLSLVVKSRRLEDARKVYDEMCERGGCVDNYSTCIMVKGM 215

Query: 63  CKMGRVSPGF-VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
           C  G+V  G  ++  R  + C  P+ V + ++I G C    I  A  +F +L+  G  P 
Sbjct: 216 CSEGKVEEGRKLIEDRWGKGC-VPNIVFYNTIIGGYCKLGDIENAKLVFKELKLKGFMPT 274

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEM-----------------ANGNGEFGVV------ 158
           + T+ T+ING C+ G  + +  L EE+                 A     F V       
Sbjct: 275 LETFGTMINGFCKKGDFVASDRLLEEVKERGLRVCVWFLNNIIDAKYRHGFKVDPAESIR 334

Query: 159 ------CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                 CKPD  TY+ + + LCKEG  + A  L  +   + +    ++Y  LI+ +C + 
Sbjct: 335 WIVANDCKPDIATYNILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQAYCKSK 394

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           +++ A  L +++ ++G +P++VT+ ++++ L  +G MD+A  +   +I  GV PDA++YN
Sbjct: 395 EYDIASKLLLQLAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYN 454

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
            LM G C TGR   AK LF  M     + D + Y  LI+G+ ++ + + A  +++  + K
Sbjct: 455 MLMSGLCKTGRFLPAKLLFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEK 514

Query: 333 GIRPTVVTYNT 343
           G++  VV +N 
Sbjct: 515 GVKVDVVHHNA 525



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 161/342 (47%), Gaps = 21/342 (6%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++ IL   L  + H D  +++  +L   G+ PD   YN+L++  CK GR  P  ++
Sbjct: 413 PDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLL 472

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +L     PDA  + +LI G        EA  +FT     G K DV  +  +I G CR
Sbjct: 473 FSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKGVKVDVVHHNAMIKGFCR 532

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    AL     M   N E  V   PD  TYSTI DG  K+  +  A ++F  M+    
Sbjct: 533 SGMLDEALACMNRM---NEEHLV---PDKFTYSTIIDGYVKQQDMATAIKIFRDMEKNKC 586

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK-MDEAS 253
            P+VVTYTSLI GFC   D++ A+  F EM  + + PNVVT+  ++    K    +++A 
Sbjct: 587 KPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDLVPNVVTYTTLIRSFAKESSTLEKAV 646

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFC--LTGRV-------NRAK-----ELFVSMESNGC 299
              ELM+     P+   +N L+ GF    +GR        N  +     E F  M+S+G 
Sbjct: 647 YYWELMMTNKCVPNEVTFNCLLQGFVKKTSGRFLGEPDGFNHGQSFLFFEFFHRMKSDGW 706

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                +Y  ++   C +  ++ A  L   M+ KG  P  V++
Sbjct: 707 SDHGAAYNSVLVCLCVHGMVKTACMLQDRMVKKGFSPDPVSF 748



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 158/329 (48%), Gaps = 7/329 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++NIL   L K    +    L    +  GL     +Y  LI  +CK         +
Sbjct: 343 PDIATYNILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQAYCKSKEYDIASKL 402

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++      PD VT+  LI GL     + +A  +  KL   G  PD   Y  L++GLC+
Sbjct: 403 LLQLAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCK 462

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG  + A  LF EM + +        PDA  Y+T+ DG  + G  D+A+++F    ++ +
Sbjct: 463 TGRFLPAKLLFSEMLDRS------ILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKGV 516

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             DVV + ++I+GFC +   +EA      M ++ + P+  T++ I++   K   M  A +
Sbjct: 517 KVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIK 576

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +   M +   +P+   Y +L++GFC  G  + A+E F  M+S   + +V +Y  LI  + 
Sbjct: 577 IFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDLVPNVVTYTTLIRSFA 636

Query: 315 KNKE-IEGALSLYSEMLSKGIRPTVVTYN 342
           K    +E A+  +  M++    P  VT+N
Sbjct: 637 KESSTLEKAVYYWELMMTNKCVPNEVTFN 665



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/294 (20%), Positives = 115/294 (39%), Gaps = 54/294 (18%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V   N +     ++   D  L+   R+N   L PD +TY+ +I+ + K   ++    +  
Sbjct: 520 VVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFR 579

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            + ++   P+ VT+TSLI G C +     A   F ++++    P+V TYTTLI    +  
Sbjct: 580 DMEKNKCKPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDLVPNVVTYTTLIRSFAKES 639

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG------------------------ 172
            T+     + E+   N      C P+ +T++ +  G                        
Sbjct: 640 STLEKAVYYWELMMTNK-----CVPNEVTFNCLLQGFVKKTSGRFLGEPDGFNHGQSFLF 694

Query: 173 -------------------------LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207
                                    LC  G V  A  L  +M  +  +PD V++ +++ G
Sbjct: 695 FEFFHRMKSDGWSDHGAAYNSVLVCLCVHGMVKTACMLQDRMVKKGFSPDPVSFAAILHG 754

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           FC   +  + + +    +D+      V ++ ++ +      + EAS +L  M++
Sbjct: 755 FCVVGNSKQWRNMDFRNLDEKGLEVAVRYSRVLEQHLPKAVICEASTILHAMVE 808


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 170/328 (51%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S +IL     +N        LF ++  +G  P + TY+ LI  FCK G +  GF +
Sbjct: 410 PNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYL 469

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    PD + ++ LI GLC +  + +A   F +    G  P+VFT  TL++  CR
Sbjct: 470 YEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCR 529

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
               + A+ ++  M   N       K D +TY+ +  G  + G VD+A  LF +M  ++ 
Sbjct: 530 LKCIVGAMKVYYLMGMLN------IKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDF 583

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDV+TY +LI G C     +   C+F  M    V P++  +NV++N   + G ++ A  
Sbjct: 584 KPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALG 643

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L   +++ G +PD   +NT++  +C   R++ A +LF  M S     +  ++ ILI+ +C
Sbjct: 644 LFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFC 703

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +   ++ A+ ++S+ML +G  P +VTY+
Sbjct: 704 REGRMDDAMLMFSKMLEEGPEPNLVTYS 731



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 179/375 (47%), Gaps = 42/375 (11%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F+ ++R+ P P  V +F+ L     K  + D    LF  +   G+ PDL  Y+ILI+   
Sbjct: 295 FNMVVRIGPKPN-VVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLF 353

Query: 64  KMGRVSPG-------------------------FVVLG----------RILRSCFTPDAV 88
           K GR+  G                         +V +G          R+L    +P+ V
Sbjct: 354 KAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVV 413

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           + + LIKG C   RI+EA  LF ++   G +P + TY+ LI G C++G+      L+E+M
Sbjct: 414 SCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDM 473

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                     C+PD I YS + +GLCK+G V  A   F +  +  ++P+V T  +L+  F
Sbjct: 474 IKKR------CEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSF 527

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268
           C       A  ++  M    ++ + VT+ +++    + G++DEA  L   M++   +PD 
Sbjct: 528 CRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDV 587

Query: 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328
             Y TL+DG C   + +    +F  M  N    D+  Y +LIN + +   +E AL L+  
Sbjct: 588 ITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVH 647

Query: 329 MLSKGIRPTVVTYNT 343
           ++ +G +P V T+NT
Sbjct: 648 VVERGPKPDVFTFNT 662



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 160/322 (49%), Gaps = 6/322 (1%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           +L G L  +   + ++  +  L S         Y  ++N F   G V  G      +++ 
Sbjct: 207 LLLGSLIDSHCVEVIVDKYGELCSAMREQPFSVYEFVMNRFMNKGEVEMGLRFHKALVQG 266

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
            F  D +T   ++KG+  ++ I  A   F  +   G KP+V T++TLI+  C+ G+   A
Sbjct: 267 GFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKA 326

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
             LF+ MA GNG       PD I YS + DGL K G ++  + L L   D+ I  DVV +
Sbjct: 327 FVLFDVMA-GNG-----VTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGF 380

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
           +S +  +    D      ++  M+++G+ PNVV+ ++++   C+NG++ EA  L   +++
Sbjct: 381 SSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILK 440

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
           +G  P    Y+ L+ GFC +G +     L+  M    C  D   Y +LING CK   +  
Sbjct: 441 LGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGD 500

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           AL  + + +++G+ P V T NT
Sbjct: 501 ALRFFFQAVNRGLSPNVFTLNT 522



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 156/323 (48%), Gaps = 7/323 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V + N L     + K     + ++  +  + +  D  TY ILI    + GRV    ++
Sbjct: 515 PNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALML 574

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++L+  F PD +T+ +LI GLC   +      +F  +      PD+  Y  LIN   R
Sbjct: 575 FFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSR 634

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            GH   AL LF  +           KPD  T++T+    C    +D A +LF KM  E +
Sbjct: 635 EGHLEAALGLFVHVVERGP------KPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQL 688

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS- 253
            P+ +T+T LI  FC     ++A  +F +M+++G +PN+VT++ +++   K+  M E+  
Sbjct: 689 RPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGL 748

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +L   M++  + P+   Y+ L+DG C  G +  A   F        + DV +Y ILI GY
Sbjct: 749 KLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGY 808

Query: 314 CKNKEIEGALSLYSEMLSKGIRP 336
           CK   +  A+ LY  ML   + P
Sbjct: 809 CKVGRLTEAMMLYDNMLLNRLTP 831



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 169/342 (49%), Gaps = 8/342 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +++ M++    P  +  +++L   L K       L  F +  + GL P+++T N L++
Sbjct: 467 FYLYEDMIKKRCEPDTIV-YSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLD 525

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FC++  +     V   +       D VT+T LIKG     R+ EA  LF ++     KP
Sbjct: 526 SFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKP 585

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           DV TY TLI+GLC+   +   L +F+ M            PD   Y+ + +   +EG ++
Sbjct: 586 DVITYCTLIDGLCKLKKSSAGLCIFDFMCKN------AVAPDIAIYNVLINMHSREGHLE 639

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A  LF+ + +    PDV T+ ++I  +C     ++A  LF +M  + ++PN +TF +++
Sbjct: 640 AALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILI 699

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG-FCLTGRVNRAKELFVSMESNGC 299
           +  C+ G+MD+A  +   M++ G  P+   Y+ L+ G F     +    +L+  M  N  
Sbjct: 700 DAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNI 759

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             ++ SY ILI+G CK   ++ A   +   L K + P V+ Y
Sbjct: 760 APNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAY 801



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 148/300 (49%), Gaps = 7/300 (2%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           Y++ M        ++ IL    A+    D  L LF ++      PD+ TY  LI+  CK+
Sbjct: 541 YLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKL 600

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
            + S G  +   + ++   PD   +  LI     E  +  A  LF  +   G KPDVFT+
Sbjct: 601 KKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTF 660

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            T+I   C       A+ LF +M +         +P+AIT++ + D  C+EG +D A  +
Sbjct: 661 NTMICCYCNFKRLDDAVQLFAKMTSEQ------LRPNAITFTILIDAFCREGRMDDAMLM 714

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC-LFIEMMDQGVQPNVVTFNVIMNELC 244
           F KM +E   P++VTY+ LI G+  +    E+   L+ EM++  + PN+V+++++++ LC
Sbjct: 715 FSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLC 774

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           K G M EAS      +   + PD   Y  L+ G+C  GR+  A  L+ +M  N    D F
Sbjct: 775 KRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPDRF 834



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 8/233 (3%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
            CIFD+M + +   P +  +N+L    ++  H +  L LF  +   G  PD++T+N +I 
Sbjct: 607 LCIFDFMCK-NAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMIC 665

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           C+C   R+     +  ++      P+A+TFT LI   C E R+ +A  +F+K+   G +P
Sbjct: 666 CYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEP 725

Query: 121 DVFTYTTLINGLCRTGHTIVA-LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           ++ TY+ LI+G  ++   + + L L+ EM   N        P+ ++YS + DGLCK G +
Sbjct: 726 NLVTYSCLIHGYFKSQSMMESGLKLYNEMLENN------IAPNIVSYSILIDGLCKRGLM 779

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            +A   F    D+++ PDV+ YT LIRG+C      EA  L+  M+   + P+
Sbjct: 780 KEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPD 832



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 128/261 (49%), Gaps = 7/261 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++  L   L K K     L +F  +    + PD+  YN+LIN   + G +     +
Sbjct: 585 PDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGL 644

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD  TF ++I   C   R+ +A  LF K+ +   +P+  T+T LI+  CR
Sbjct: 645 FVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCR 704

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK-EGFVDKAKELFLKMKDEN 193
            G    A+ +F +M     E      P+ +TYS +  G  K +  ++   +L+ +M + N
Sbjct: 705 EGRMDDAMLMFSKMLEEGPE------PNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENN 758

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I P++V+Y+ LI G C      EA C F   +D+ + P+V+ + +++   CK G++ EA 
Sbjct: 759 IAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAM 818

Query: 254 RLLELMIQIGVRPDASVYNTL 274
            L + M+   + PD  +  TL
Sbjct: 819 MLYDNMLLNRLTPDRFLERTL 839



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 35/216 (16%)

Query: 163 AITYSTITDGLCKEGFVDKAKELFLK--MKDENINPDVV--TYTSLIRGFCYANDWNEAK 218
           ++ Y  + +  C++G  DK+ ++F+   +K   ++P+VV     SLI   C     ++  
Sbjct: 167 SVVYGFLIESYCRKGMFDKSVDIFMHVCVKGIFVSPNVVYLLLGSLIDSHCVEVIVDKYG 226

Query: 219 CLFIEMMDQ-------------------------------GVQPNVVTFNVIMNELCKNG 247
            L   M +Q                               G   +++T N I+  +    
Sbjct: 227 ELCSAMREQPFSVYEFVMNRFMNKGEVEMGLRFHKALVQGGFGLDIITCNKILKGIWMQN 286

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            +  A     ++++IG +P+   ++TL+D +C  G +++A  LF  M  NG   D+  Y 
Sbjct: 287 DIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYS 346

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ILI+G  K   +E    L    L KGI+  VV +++
Sbjct: 347 ILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSS 382



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 54/126 (42%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  ML   P P  V    ++ G        ++ L L+  +    + P++ +Y+ILI+  
Sbjct: 714 MFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGL 773

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK G +          L     PD + +T LI+G C   R+ EA  L+  +      PD 
Sbjct: 774 CKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPDR 833

Query: 123 FTYTTL 128
           F   TL
Sbjct: 834 FLERTL 839


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 172/329 (52%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++ +L   L K + +D    + K ++  G  P+   YN LI+ +C++G +S    +
Sbjct: 265 PSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQI 324

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++ +  +P++VT  SLI+G C  +++  A  L  ++   G   +  T+T++I+ LC 
Sbjct: 325 RDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCL 384

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL    EM   N       KP+    + +  GLC+ G   +A EL+ ++ ++  
Sbjct: 385 KCRFDSALLFIMEMLLRN------FKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGF 438

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             + VT  +LI G C A    EA  L  EM+++G+  + +++N ++   CK GK++E  +
Sbjct: 439 AANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFK 498

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L E M++ G++PD   YN L+ G C  G++  A  L+   + NG   D ++YGI+I+GYC
Sbjct: 499 LKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYC 558

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K   +E    L+ EM++  I    V Y T
Sbjct: 559 KANRVEEGEKLFQEMVTMKIEQNAVVYGT 587



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 162/322 (50%), Gaps = 6/322 (1%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           +L   L +N      + L+ RL   G   +  T N LI+  C+ G       +L  +L  
Sbjct: 412 LLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLER 471

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
               D++++ +LI   C E ++ E   L  ++   G +PD++TY  L++GLC  G    A
Sbjct: 472 GLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEA 531

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
             L+ E    NG F     PDA TY  + DG CK   V++ ++LF +M    I  + V Y
Sbjct: 532 GGLWHE-CKKNGNF-----PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVY 585

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
            +LIR +C   +  EA  L  +M  +G+     T++ +++ L   G +D A++LL+ M +
Sbjct: 586 GTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRK 645

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321
            G+ P+   Y  L+ G+C  G++++   +   M  N    +  +Y I+ING+CK   ++ 
Sbjct: 646 EGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKA 705

Query: 322 ALSLYSEMLSKGIRPTVVTYNT 343
           A  L +EM  KGI P  VTYN 
Sbjct: 706 AAKLLNEMAQKGIVPDAVTYNA 727



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 154/324 (47%), Gaps = 29/324 (8%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N L   L +    +    L K +   GL  D  +YN LI   CK G+V  GF +   ++R
Sbjct: 446 NALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVR 505

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD  T+  L+ GLC   +I EA  L+ + +  G  PD +TY  +I+G C+      
Sbjct: 506 RGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEE 565

Query: 141 ALNLFEEMA--------------------NGNGEFGVVCKPD---------AITYSTITD 171
              LF+EM                     NGN       + D         + TYS++  
Sbjct: 566 GEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIH 625

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
           GL   G VD A +L  +M+ E ++P+VV YT+LI G+C     ++   +  EM    V P
Sbjct: 626 GLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHP 685

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
           N +T+ +++N  CK G M  A++LL  M Q G+ PDA  YN L +GFC  G++  A ++ 
Sbjct: 686 NKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVC 745

Query: 292 VSMESNGCMRDVFSYGILINGYCK 315
             M + G   D  +Y  LI+G+ K
Sbjct: 746 DLMSTGGISLDDITYTTLIDGWHK 769



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 165/343 (48%), Gaps = 9/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + +FD M     +P  V  F+ +          D  + LF+++  +G+ P++ TYN +I+
Sbjct: 182 YQVFDIMCHCGVTPD-VYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIH 240

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK GR+   F    ++ +    P  VT+  LI GL    R  EA  +  ++   G  P
Sbjct: 241 GLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAP 300

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           +   Y TLI+G CR G+   AL + ++M +NG         P+++T +++  G CK   +
Sbjct: 301 NNVVYNTLIDGYCRIGNISTALQIRDDMISNG-------ISPNSVTCNSLIQGYCKSNQM 353

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           + A+ L  +M       +  T+TS+I   C    ++ A    +EM+ +  +PN     ++
Sbjct: 354 EHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLL 413

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++ LC+NGK  EA  L   +++ G   +    N L+ G C  G    A +L   M   G 
Sbjct: 414 VSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGL 473

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + D  SY  LI   CK  ++E    L  EM+ +GI+P + TYN
Sbjct: 474 VLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYN 516



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 153/350 (43%), Gaps = 41/350 (11%)

Query: 29  KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88
           K+  +  V  LF  L + GLFP L T N L++   K   V   + V   +     TPD  
Sbjct: 139 KHLGFGVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVY 198

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
            F++++   C   R+ +A  LF K+   G  P+V TY  +I+GLC+ G    A    E+M
Sbjct: 199 LFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKM 258

Query: 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208
                      KP  +TY  + +GL K    D+A  +  +M D    P+ V Y +LI G+
Sbjct: 259 EKER------VKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGY 312

Query: 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG----- 263
           C   + + A  +  +M+  G+ PN VT N ++   CK+ +M+ A  LLE M+  G     
Sbjct: 313 CRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQ 372

Query: 264 ------------------------------VRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
                                          +P+  +   L+ G C  G+ + A EL+  
Sbjct: 373 GTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYR 432

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   G   +  +   LI+G C+    E A  L  EML +G+    ++YNT
Sbjct: 433 LLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNT 482



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 130/264 (49%), Gaps = 6/264 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N+L   L      +    L+      G FPD YTY I+I+ +CK  RV  G  +
Sbjct: 510 PDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKL 569

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++      +AV + +LI+  C    + EA  L   +R+ G      TY++LI+GL  
Sbjct: 570 FQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSN 629

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L +EM            P+ + Y+ +  G CK G + K   +  +M   N+
Sbjct: 630 IGLVDSANQLLDEMRKEG------LSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNV 683

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P+ +TYT +I G C   +   A  L  EM  +G+ P+ VT+N + N  CK GKM+EA +
Sbjct: 684 HPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALK 743

Query: 255 LLELMIQIGVRPDASVYNTLMDGF 278
           + +LM   G+  D   Y TL+DG+
Sbjct: 744 VCDLMSTGGISLDDITYTTLIDGW 767



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R    P    +++ L   L+     D+   L   +   GL P++  Y  LI  +CK+G+
Sbjct: 608 MRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQ 667

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +     +L  +  +   P+ +T+T +I G C    +  AA L  ++   G  PD  TY  
Sbjct: 668 MHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNA 727

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           L NG C+ G    AL + + M+ G          D ITY+T+ DG  K
Sbjct: 728 LTNGFCKEGKMEEALKVCDLMSTGGISL------DDITYTTLIDGWHK 769



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 1/129 (0%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M +   SP  VC +  L G   K      V S+ + ++   + P+  TY I+IN  
Sbjct: 639 LLDEMRKEGLSPNVVC-YTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGH 697

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           CK+G +     +L  + +    PDAVT+ +L  G C E ++ EA  +   +   G   D 
Sbjct: 698 CKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDD 757

Query: 123 FTYTTLING 131
            TYTTLI+G
Sbjct: 758 ITYTTLIDG 766


>gi|357129487|ref|XP_003566393.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Brachypodium distachyon]
          Length = 837

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 163/319 (51%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   SFNI+   L K K  D  L+L K +  IG    L  +N LI+  C + R+  G+ +
Sbjct: 438 PNSDSFNIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDRLDEGYKM 497

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +      P   T+ SL  G+C       A  L   +R  G +P +   T ++  LC 
Sbjct: 498 FNLMKNLGLIPSEFTYNSLFYGICRRKDPNCALDLLRDMRTNGHRPWIKNCTEMVQQLCI 557

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    AL   +EM     + G +  PD +TYS   +GLCK G VD A  +F  +  +  
Sbjct: 558 SGRITEALQFLDEML----KMGFL--PDIVTYSAAMNGLCKTGEVDNALGIFRDISSKYY 611

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PDVV +  LI GF  +   +EA+ +  EM+++G+ P++VT+N++++  CK+G +++A  
Sbjct: 612 LPDVVAHNILINGFRISGKLSEAQEVMEEMLEKGLFPSIVTYNLMIDVWCKSGNIEKAIA 671

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  MI     P    Y +L+DG C TGR + A  L+  M   GC  +  +Y   +NG C
Sbjct: 672 CLNKMIDEEESPTVVTYTSLIDGLCSTGRPDEAIALWHKMMDKGCAPNKIAYTAFVNGLC 731

Query: 315 KNKEIEGALSLYSEMLSKG 333
           K   ++ AL+ Y EM++KG
Sbjct: 732 KRARVDTALTYYEEMMTKG 750



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 140/306 (45%), Gaps = 10/306 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N LF  + + K  +  L L + + + G  P +     ++   C  GR++     
Sbjct: 508 PSEFTYNSLFYGICRRKDPNCALDLLRDMRTNGHRPWIKNCTEMVQQLCISGRITEALQF 567

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +L+  F PD VT+++ + GLC    +  A  +F  + +    PDV  +  LING   
Sbjct: 568 LDEMLKMGFLPDIVTYSAAMNGLCKTGEVDNALGIFRDISSKYYLPDVVAHNILINGFRI 627

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  + EEM    G F     P  +TY+ + D  CK G ++KA     KM DE  
Sbjct: 628 SGKLSEAQEVMEEMLE-KGLF-----PSIVTYNLMIDVWCKSGNIEKAIACLNKMIDEEE 681

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P VVTYTSLI G C     +EA  L+ +MMD+G  PN + +   +N LCK  ++D A  
Sbjct: 682 SPTVVTYTSLIDGLCSTGRPDEAIALWHKMMDKGCAPNKIAYTAFVNGLCKRARVDTALT 741

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             E M+  G   D       ++    TG   +  EL   +      +D+   G L     
Sbjct: 742 YYEEMMTKGFELDTFSCLYFINFLISTGNATKGCELLKEV----LQKDITHSGDLKMAGL 797

Query: 315 KNKEIE 320
            NK +E
Sbjct: 798 INKAVE 803



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 169/391 (43%), Gaps = 64/391 (16%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC--- 63
           +L M PS     + ++L    AK    D  + +F ++ S G    L  Y++LI   C   
Sbjct: 273 LLGMRPSEK---TLSVLVHGFAKQLRLDKAMEMFDKMGSYGFVAGLPMYSVLIEGLCQKK 329

Query: 64  ------------KMGRVSPGFVVLGRILRS-------------------CFTPDAVT--F 90
                       K G V+P   +L ++L +                      P  V   F
Sbjct: 330 EIGKAVKLFEEMKRGEVAPDARLLKKMLEAFCREGDFAIAGLFINENARQLKPSGVIALF 389

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFG-------------------CKPDVFTYTTLING 131
             +++G     +   A  L T +   G                    KP+  ++  ++ G
Sbjct: 390 NVVLEGFVNHGQAEAAYQLLTSMIRGGQGISDGVTVGAHVVDISEDVKPNSDSFNIVVCG 449

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
           LC+      AL L ++M       G+ CK   + ++ +   LC    +D+  ++F  MK+
Sbjct: 450 LCKVKKLDNALALIKDMT------GIGCKGKLLMFNDLIHELCSLDRLDEGYKMFNLMKN 503

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             + P   TY SL  G C   D N A  L  +M   G +P +     ++ +LC +G++ E
Sbjct: 504 LGLIPSEFTYNSLFYGICRRKDPNCALDLLRDMRTNGHRPWIKNCTEMVQQLCISGRITE 563

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A + L+ M+++G  PD   Y+  M+G C TG V+ A  +F  + S   + DV ++ ILIN
Sbjct: 564 ALQFLDEMLKMGFLPDIVTYSAAMNGLCKTGEVDNALGIFRDISSKYYLPDVVAHNILIN 623

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           G+  + ++  A  +  EML KG+ P++VTYN
Sbjct: 624 GFRISGKLSEAQEVMEEMLEKGLFPSIVTYN 654



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 153/330 (46%), Gaps = 27/330 (8%)

Query: 35  TVLSLFKRLNSIGLFPD--LYTYNILINCFCKMGRVSPGFVVLGRILRSC---------- 82
            +  LF   N+  L P   +  +N+++  F   G+    + +L  ++R            
Sbjct: 367 AIAGLFINENARQLKPSGVIALFNVVLEGFVNHGQAEAAYQLLTSMIRGGQGISDGVTVG 426

Query: 83  ---------FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
                      P++ +F  ++ GLC   ++  A AL   +   GCK  +  +  LI+ LC
Sbjct: 427 AHVVDISEDVKPNSDSFNIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELC 486

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                     +F  M N     G++  P   TY+++  G+C+    + A +L   M+   
Sbjct: 487 SLDRLDEGYKMFNLMKN----LGLI--PSEFTYNSLFYGICRRKDPNCALDLLRDMRTNG 540

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P +   T +++  C +    EA     EM+  G  P++VT++  MN LCK G++D A 
Sbjct: 541 HRPWIKNCTEMVQQLCISGRITEALQFLDEMLKMGFLPDIVTYSAAMNGLCKTGEVDNAL 600

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +   +      PD   +N L++GF ++G+++ A+E+   M   G    + +Y ++I+ +
Sbjct: 601 GIFRDISSKYYLPDVVAHNILINGFRISGKLSEAQEVMEEMLEKGLFPSIVTYNLMIDVW 660

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           CK+  IE A++  ++M+ +   PTVVTY +
Sbjct: 661 CKSGNIEKAIACLNKMIDEEESPTVVTYTS 690



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 8/295 (2%)

Query: 50  PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109
           P+  ++NI++   CK+ ++     ++  +         + F  LI  LC+  R+ E   +
Sbjct: 438 PNSDSFNIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDRLDEGYKM 497

Query: 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYST 168
           F  ++  G  P  FTY +L  G+CR      AL+L  +M  NG+       +P     + 
Sbjct: 498 FNLMKNLGLIPSEFTYNSLFYGICRRKDPNCALDLLRDMRTNGH-------RPWIKNCTE 550

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +   LC  G + +A +   +M      PD+VTY++ + G C   + + A  +F ++  + 
Sbjct: 551 MVQQLCISGRITEALQFLDEMLKMGFLPDIVTYSAAMNGLCKTGEVDNALGIFRDISSKY 610

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
             P+VV  N+++N    +GK+ EA  ++E M++ G+ P    YN ++D +C +G + +A 
Sbjct: 611 YLPDVVAHNILINGFRISGKLSEAQEVMEEMLEKGLFPSIVTYNLMIDVWCKSGNIEKAI 670

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                M        V +Y  LI+G C     + A++L+ +M+ KG  P  + Y  
Sbjct: 671 ACLNKMIDEEESPTVVTYTSLIDGLCSTGRPDEAIALWHKMMDKGCAPNKIAYTA 725



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 146/337 (43%), Gaps = 29/337 (8%)

Query: 23  LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82
           L  C       D    +F+R++  G + D +   IL   F K G+V     +LGR+    
Sbjct: 217 LLQCYCNAGRPDDANGVFERMSQRG-WVDEHVLTILAVAFSKWGKVDGAVELLGRMELLG 275

Query: 83  FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142
             P   T + L+ G   + R+ +A  +F K+ ++G    +  Y+ LI GLC+      A+
Sbjct: 276 MRPSEKTLSVLVHGFAKQLRLDKAMEMFDKMGSYGFVAGLPMYSVLIEGLCQKKEIGKAV 335

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD--VVT 200
            LFEEM  G         PDA     + +  C+EG    A  LF+      + P   +  
Sbjct: 336 KLFEEMKRGE------VAPDARLLKKMLEAFCREGDFAIAG-LFINENARQLKPSGVIAL 388

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQG-------------------VQPNVVTFNVIMN 241
           +  ++ GF        A  L   M+  G                   V+PN  +FN+++ 
Sbjct: 389 FNVVLEGFVNHGQAEAAYQLLTSMIRGGQGISDGVTVGAHVVDISEDVKPNSDSFNIVVC 448

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            LCK  K+D A  L++ M  IG +    ++N L+   C   R++   ++F  M++ G + 
Sbjct: 449 GLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDRLDEGYKMFNLMKNLGLIP 508

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
             F+Y  L  G C+ K+   AL L  +M + G RP +
Sbjct: 509 SEFTYNSLFYGICRRKDPNCALDLLRDMRTNGHRPWI 545



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 154/356 (43%), Gaps = 39/356 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL------NSIGLFPDLYTYNILINCFCKMGRV 68
           P   +FN L   LAK    D   +  + +       S+    D YT   L+ C+C  GR 
Sbjct: 172 PNSYTFNCLLDTLAKAGRADDAEARLQEMVVRCGDESV----DKYTLTSLLQCYCNAGRP 227

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                V  R+ +  +  + V  T L        ++  A  L  ++   G +P   T + L
Sbjct: 228 DDANGVFERMSQRGWVDEHV-LTILAVAFSKWGKVDGAVELLGRMELLGMRPSEKTLSVL 286

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           ++G  +      A+ +F++M    G +G V       YS + +GLC++  + KA +LF +
Sbjct: 287 VHGFAKQLRLDKAMEMFDKM----GSYGFVA--GLPMYSVLIEGLCQKKEIGKAVKLFEE 340

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN--VVTFNVIMNELCKN 246
           MK   + PD      ++  FC   D+  A  LFI    + ++P+  +  FNV++     +
Sbjct: 341 MKRGEVAPDARLLKKMLEAFCREGDFAIAG-LFINENARQLKPSGVIALFNVVLEGFVNH 399

Query: 247 GKMDEASRLLELMIQIG-------------------VRPDASVYNTLMDGFCLTGRVNRA 287
           G+ + A +LL  MI+ G                   V+P++  +N ++ G C   +++ A
Sbjct: 400 GQAEAAYQLLTSMIRGGQGISDGVTVGAHVVDISEDVKPNSDSFNIVVCGLCKVKKLDNA 459

Query: 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             L   M   GC   +  +  LI+  C    ++    +++ M + G+ P+  TYN+
Sbjct: 460 LALIKDMTGIGCKGKLLMFNDLIHELCSLDRLDEGYKMFNLMKNLGLIPSEFTYNS 515



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 7/197 (3%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
            D ML+M    P + +++     L K    D  L +F+ ++S    PD+  +NILIN F 
Sbjct: 568 LDEMLKMG-FLPDIVTYSAAMNGLCKTGEVDNALGIFRDISSKYYLPDVVAHNILINGFR 626

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G++S    V+  +L     P  VT+  +I   C    I +A A   K+      P V 
Sbjct: 627 ISGKLSEAQEVMEEMLEKGLFPSIVTYNLMIDVWCKSGNIEKAIACLNKMIDEEESPTVV 686

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TYT+LI+GLC TG    A+ L+ +M +        C P+ I Y+   +GLCK   VD A 
Sbjct: 687 TYTSLIDGLCSTGRPDEAIALWHKMMDKG------CAPNKIAYTAFVNGLCKRARVDTAL 740

Query: 184 ELFLKMKDENINPDVVT 200
             + +M  +    D  +
Sbjct: 741 TYYEEMMTKGFELDTFS 757



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 98/183 (53%), Gaps = 9/183 (4%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKA----KELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
           C P++ T++ + D L K G  D A    +E+ ++  DE++  D  T TSL++ +C A   
Sbjct: 170 CTPNSYTFNCLLDTLAKAGRADDAEARLQEMVVRCGDESV--DKYTLTSLLQCYCNAGRP 227

Query: 215 NEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           ++A  +F  M  +G V  +V+T  ++     K GK+D A  LL  M  +G+RP     + 
Sbjct: 228 DDANGVFERMSQRGWVDEHVLT--ILAVAFSKWGKVDGAVELLGRMELLGMRPSEKTLSV 285

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           L+ GF    R+++A E+F  M S G +  +  Y +LI G C+ KEI  A+ L+ EM    
Sbjct: 286 LVHGFAKQLRLDKAMEMFDKMGSYGFVAGLPMYSVLIEGLCQKKEIGKAVKLFEEMKRGE 345

Query: 334 IRP 336
           + P
Sbjct: 346 VAP 348


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 171/328 (52%), Gaps = 15/328 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S++ +     K    D +L   +R++     P++ TYN +I   CK   V     
Sbjct: 85  PPDVVSYSTVINGFFKEGDLDKMLD--QRIS-----PNVVTYNSIIAALCKAQTVDKAME 137

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL  +++S   PD +T+ S++ G C+  +  EA     K+R+ G +PDV TY +L++ LC
Sbjct: 138 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLC 197

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A  +F+ M           KPD  TY T+  G   +G + +   L   M    
Sbjct: 198 KNGRCTEARKIFDSMTKRG------LKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNG 251

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I+P+   ++ L+  +       EA  +F +M  QG+ PN VT+  +++ LCK+G++++A 
Sbjct: 252 IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAM 311

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG-CMRDVFSYGILING 312
              E MI  G+RPD+ VYN+L+   C+  +  +A+ELF+ M   G C+  +F +  +I+ 
Sbjct: 312 LYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIF-FNSIIDS 370

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +CK   +  +  L+  M+  G++P ++T
Sbjct: 371 HCKEGRVIESGKLFDLMVRIGVKPDIIT 398



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 141/261 (54%), Gaps = 15/261 (5%)

Query: 85  PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLINGLCRTGHTIVAL 142
           PD  ++  L+ GLC E+R  EA  L   +   G  C PDV +Y+T+ING  + G      
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGD----- 103

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
              ++M +          P+ +TY++I   LCK   VDKA E+   M    + PD +TY 
Sbjct: 104 --LDKMLDQR------ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYN 155

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
           S++ GFC +    EA     +M   GV+P+VVT+N +M+ LCKNG+  EA ++ + M + 
Sbjct: 156 SIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKR 215

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G++PD + Y TL+ G+   G +     L   M  NG   + + + IL+  Y K +++E A
Sbjct: 216 GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA 275

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
           + ++S+M  +G+ P  VTY T
Sbjct: 276 MLVFSKMRQQGLNPNAVTYGT 296



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 148/304 (48%), Gaps = 7/304 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
            D ML    SP  V ++N +   L K +  D  + +   +   G+ PD  TYN +++ FC
Sbjct: 104 LDKMLDQRISPN-VVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G+     V L ++      PD VT+ SL+  LC   R  EA  +F  +   G KPD+ 
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TY TL+ G    G  +    L + M   NG       P+   +S +     K+  V++A 
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVR-NG-----IHPNHYVFSILVCAYAKQEKVEEAM 276

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            +F KM+ + +NP+ VTY ++I   C +    +A   F +M+D+G++P+ + +N +++ L
Sbjct: 277 LVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSL 336

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C   K ++A  L   M+  G+      +N+++D  C  GRV  + +LF  M   G   D+
Sbjct: 337 CIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDI 396

Query: 304 FSYG 307
            + G
Sbjct: 397 ITLG 400


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 171/328 (52%), Gaps = 15/328 (4%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V S++ +     K    D +L   +R++     P++ TYN +I   CK   V     
Sbjct: 85  PPDVVSYSTVINGFFKEGDLDKMLD--QRIS-----PNVVTYNSIIAALCKAQTVDKAME 137

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VL  +++S   PD +T+ S++ G C+  +  EA     K+R+ G +PDV TY +L++ LC
Sbjct: 138 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLC 197

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G    A  +F+ M           KPD  TY T+  G   +G + +   L   M    
Sbjct: 198 KNGRCTEARKIFDSMTKRG------LKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNG 251

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I+P+   ++ L+  +       EA  +F +M  QG+ PN VT+  +++ LCK+G++++A 
Sbjct: 252 IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAM 311

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG-CMRDVFSYGILING 312
              E MI  G+RPD+ VYN+L+   C+  +  +A+ELF+ M   G C+  +F +  +I+ 
Sbjct: 312 LYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIF-FNSIIDS 370

Query: 313 YCKNKEIEGALSLYSEMLSKGIRPTVVT 340
           +CK   +  +  L+  M+  G++P ++T
Sbjct: 371 HCKEGRVIESGKLFDLMVRIGVKPDIIT 398



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 178/389 (45%), Gaps = 51/389 (13%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
            D ML    SP  V ++N +   L K +  D  + +   +   G+ PD  TYN +++ FC
Sbjct: 104 LDKMLDQRISPN-VVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             G+     V L ++      PD VT+ SL+  LC   R  EA  +F  +   G KPD+ 
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMA-NG----NGEFGV-VC------------------ 159
           TY TL+ G    G  +    L + M  NG    +  F + VC                  
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 282

Query: 160 -----KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
                 P+A+TY T+ D LCK G V+ A   F +M DE + PD + Y SLI   C  + W
Sbjct: 283 RQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKW 342

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
            +A+ LF+EM+D+G+  + + FN I++  CK G++ E+ +L +LM++IGV+PD       
Sbjct: 343 EKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRF 402

Query: 275 MDG------------FCLTGRVNRA-KELFVSMESNGCMRDVFS--------YGILINGY 313
           +              F  T   N   KE    + +NG      S        Y I+++G 
Sbjct: 403 LGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGL 462

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           CKNK  + AL ++  +    ++    T+N
Sbjct: 463 CKNKLTDDALRMFQNLCLMDLKLEARTFN 491



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 145/272 (53%), Gaps = 16/272 (5%)

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLING 131
           V   +LR    PD  ++  L+ GLC E+R  EA  L   +   G  C PDV +Y+T+ING
Sbjct: 39  VFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVING 97

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
             + G         ++M +          P+ +TY++I   LCK   VDKA E+   M  
Sbjct: 98  FFKEGD-------LDKMLDQR------ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVK 144

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             + PD +TY S++ GFC +    EA     +M   GV+P+VVT+N +M+ LCKNG+  E
Sbjct: 145 SGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTE 204

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A ++ + M + G++PD + Y TL+ G+   G +     L   M  NG   + + + IL+ 
Sbjct: 205 ARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVC 264

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            Y K +++E A+ ++S+M  +G+ P  VTY T
Sbjct: 265 AYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 167/391 (42%), Gaps = 70/391 (17%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F   +R     P V ++N L   L KN        +F  +   GL PD+ TY  L+  +
Sbjct: 172 VFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGY 231

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G +     +L  ++R+   P+   F+ L+     + ++ EA  +F+K+R  G  P+ 
Sbjct: 232 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNA 291

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST-------------- 168
            TY T+I+ LC++G    A+  FE+M +         +PD+I Y++              
Sbjct: 292 VTYGTVIDVLCKSGRVEDAMLYFEQMIDEG------LRPDSIVYNSLIHSLCIFDKWEKA 345

Query: 169 ---------------------ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI-- 205
                                I D  CKEG V ++ +LF  M    + PD++T    +  
Sbjct: 346 EELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGS 405

Query: 206 --RGFC-YANDWNEAKCLFIEMMDQGVQ--------------------PNVVTFNVIMNE 242
             R +  + N +     +F  M + G +                    P + T+N+I++ 
Sbjct: 406 ARRDYSLFVNIY----FIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHG 461

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LCKN   D+A R+ + +  + ++ +A  +N ++D     GR + AK+LFV+  SNG + +
Sbjct: 462 LCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 521

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
            ++Y ++         +E    L+  M   G
Sbjct: 522 YWTYRLMAENIIGQGLLEELDQLFLSMEDNG 552



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 145/343 (42%), Gaps = 32/343 (9%)

Query: 3   IFDYMLR--MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           + D M+R  +HP+      F+IL    AK +  +  + +F ++   GL P+  TY  +I+
Sbjct: 243 LLDLMVRNGIHPNH---YVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVID 299

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             CK GRV    +   +++     PD++ + SLI  LC   +  +A  LF ++   G   
Sbjct: 300 VLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICL 359

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG--F 178
               + ++I+  C+ G  I +  LF+ M        +  KPD IT         ++   F
Sbjct: 360 STIFFNSIIDSHCKEGRVIESGKLFDLMVR------IGVKPDIITLGRFLGSARRDYSLF 413

Query: 179 V-------------DKAKELFLKMKDENI------NPDVVTYTSLIRGFCYANDWNEAKC 219
           V             DK KE  +     N        P + TY  ++ G C     ++A  
Sbjct: 414 VNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALR 473

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +F  +    ++    TFN++++ L K G+ DEA  L       G+ P+   Y  + +   
Sbjct: 474 MFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENII 533

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
             G +    +LF+SME NGC  D      ++    +  EI  A
Sbjct: 534 GQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 576


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 169/378 (44%), Gaps = 59/378 (15%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+  +   L K    D    +   L   GL P + TYN+L++  CK GRV   F + GR+
Sbjct: 13  SYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRM 72

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            +   TP  VTF  LI GL    R  E   +  ++   G  P+   Y  LI   CR GH 
Sbjct: 73  EQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHC 132

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL----------- 187
             AL LF+EM           KP A+TY+ I   LCKEG +++A+ +             
Sbjct: 133 SQALRLFDEMVLKK------MKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHC 186

Query: 188 -------------------------KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
                                    +M    + P+    T+ +R  C      EA  ++ 
Sbjct: 187 GLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWF 246

Query: 223 E-----------------MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
           +                 M+++G++ + +T+N+++   CK+ KM+EA +L   M + G +
Sbjct: 247 KTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFK 306

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD   +NTL+  +C  G++     L   M++ G   D+ SYG +I+G+CK K+I  A   
Sbjct: 307 PDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEY 366

Query: 326 YSEMLSKGIRPTVVTYNT 343
            +E++ +G++P V  YN 
Sbjct: 367 LTELMDRGLKPNVFIYNA 384



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 137/257 (53%), Gaps = 6/257 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++NI+     K+   +  + L   +   G  PDL+T+N L++ +C +G++   F +L ++
Sbjct: 276 TYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQM 335

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 PD V++ ++I G C    I +A    T+L   G KP+VF Y  LI G  R G  
Sbjct: 336 KTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDI 395

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A++  E M + NG      +P  +TY ++   +C  G V++AK +F + ++ N++  V
Sbjct: 396 SGAIDAVETMKS-NG-----IQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGV 449

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           + YT +I+G+C      EA   F EM  +G+ PN +T+  +M    K+G  +EAS+L + 
Sbjct: 450 IGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDE 509

Query: 259 MIQIGVRPDASVYNTLM 275
           M+  GV PD   Y TL+
Sbjct: 510 MVGSGVIPDNITYGTLI 526



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 166/376 (44%), Gaps = 47/376 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   L K+   +    L  R+   G+ P + T+ ILIN   +  R     +V
Sbjct: 44  PTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIV 103

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +   +P+ V +  LI   C +    +A  LF ++     KP   TY  +   LC+
Sbjct: 104 LQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCK 163

Query: 135 TGHTIVALNLFEEMANGN-----GEFGVVC-----------KPDAITYSTITDG------ 172
            G    A  + E+M +       G F  V               +IT   +T G      
Sbjct: 164 EGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDP 223

Query: 173 --------LCKEG-----------------FVDKAKELFLKMKDENINPDVVTYTSLIRG 207
                   LCK G                 ++ +A ++   M ++ I  D +TY  +IRG
Sbjct: 224 LMTACMRELCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRG 283

Query: 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267
            C  +   EA  L  +M  +G +P++ TFN +++  C  GKM+E   LL+ M   G++PD
Sbjct: 284 CCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPD 343

Query: 268 ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327
              Y T++DG C    + +AKE    +   G   +VF Y  LI GY +N +I GA+    
Sbjct: 344 IVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVE 403

Query: 328 EMLSKGIRPTVVTYNT 343
            M S GI+PT VTY +
Sbjct: 404 TMKSNGIQPTNVTYGS 419



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 162/359 (45%), Gaps = 25/359 (6%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M+ +    P   ++N++   L K    +    + + + SIG+      +N ++   
Sbjct: 138 LFDEMV-LKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWL 196

Query: 63  CKMGRVSPGFV-VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK--------- 112
            +  R     V +   ++     P+    T+ ++ LC   +  EA  ++ K         
Sbjct: 197 LQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGKYMK 256

Query: 113 --------LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
                   +   G + D  TY  +I G C+      A+ L  +M           KPD  
Sbjct: 257 EATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRG------FKPDLF 310

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           T++T+    C  G +++   L  +MK E + PD+V+Y ++I G C A D  +AK    E+
Sbjct: 311 TFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTEL 370

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           MD+G++PNV  +N ++    +NG +  A   +E M   G++P    Y +LM   C  G V
Sbjct: 371 MDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLV 430

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             AK +F     N     V  Y I+I GYCK  ++  A++ + EM S+GI P  +TY T
Sbjct: 431 EEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTT 489



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 151/334 (45%), Gaps = 23/334 (6%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR-----------------VS 69
           L + +  ++V+S+   + + G+ P+       +   CK G+                 + 
Sbjct: 197 LQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGKYMK 256

Query: 70  PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129
               V+  +L      D++T+  +I+G C +S++ EA  L   +   G KPD+FT+ TL+
Sbjct: 257 EATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLL 316

Query: 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189
           +  C  G      +L ++M           +PD ++Y TI DG CK   + KAKE   ++
Sbjct: 317 HAYCNLGKMEETFHLLDQMKTEG------LQPDIVSYGTIIDGHCKAKDIRKAKEYLTEL 370

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
            D  + P+V  Y +LI G+    D + A      M   G+QP  VT+  +M  +C  G +
Sbjct: 371 MDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLV 430

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           +EA  +     +  V      Y  ++ G+C  G++  A   F  M S G   +  +Y  L
Sbjct: 431 EEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTL 490

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +  Y K+   E A  L+ EM+  G+ P  +TY T
Sbjct: 491 MYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGT 524



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 135/292 (46%), Gaps = 6/292 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +  I F  L K K+      + + + + G+  D  TYNI+I   CK  ++     + G +
Sbjct: 241 AVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDM 300

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            R  F PD  TF +L+   C   ++ E   L  +++  G +PD+ +Y T+I+G C+    
Sbjct: 301 TRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDI 360

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A     E+ +         KP+   Y+ +  G  + G +  A +    MK   I P  
Sbjct: 361 RKAKEYLTELMDRG------LKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTN 414

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTY SL+   C+A    EAK +F +  +  V   V+ + +++   CK GKM EA    E 
Sbjct: 415 VTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEE 474

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           M   G+ P+   Y TLM  +  +G    A +LF  M  +G + D  +YG LI
Sbjct: 475 MRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI 526



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 7/215 (3%)

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           ++YT +I  LC+ G       +  E+           +P  +TY+ + D LCK G V++A
Sbjct: 12  YSYTAMIKALCKAGKVDAGFEMLAELWRAG------LQPTVVTYNVLMDALCKSGRVEEA 65

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
             L  +M+   + P VVT+  LI G      + E   +  EM   GV PN V +N ++  
Sbjct: 66  FRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGW 125

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C+ G   +A RL + M+   ++P A  YN +    C  G + RA+ +   M S G    
Sbjct: 126 HCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVH 185

Query: 303 VFSYGILINGYC-KNKEIEGALSLYSEMLSKGIRP 336
              +  ++     + + +E  +S+ +EM+++G+RP
Sbjct: 186 CGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRP 220



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 80/153 (52%)

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           +  N+  +  +YT++I+  C A   +    +  E+   G+QP VVT+NV+M+ LCK+G++
Sbjct: 3   ESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRV 62

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309
           +EA RL   M Q G+ P    +  L++G     R      +   ME  G   +   Y  L
Sbjct: 63  EEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNEL 122

Query: 310 INGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           I  +C+      AL L+ EM+ K ++PT VTYN
Sbjct: 123 IGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYN 155



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L G   +N      +   + + S G+ P   TY  L+   C  G V     +
Sbjct: 377 PNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTI 436

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             +   +      + +T +I+G C   +++EA A F ++R+ G  P+  TYTTL+    +
Sbjct: 437 FSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSK 496

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
           +G++  A  LF+EM       GV+  PD ITY T+
Sbjct: 497 SGNSEEASKLFDEMVGS----GVI--PDNITYGTL 525


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 168/343 (48%), Gaps = 7/343 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             +FD M++   SP  V + N +   L         + +++ +   G+ P + TYN L++
Sbjct: 490 LSVFDKMIKSRLSPD-VKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLD 548

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            +CK G+V  G  +L  + R    P+ VT+  LI GL  +    +A  L  ++   G K 
Sbjct: 549 SYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV 608

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
             +TY  LI G    G    AL+L EEM            P   TY++   GLCK G + 
Sbjct: 609 SAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGA------SPTVATYNSFIYGLCKLGRMS 662

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A +    M   N+ PDVV+Y +LI G+C   +  +A  LF E+    + P +VT+N ++
Sbjct: 663 DAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLL 722

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LC+ G+++ A +L   MI  G+ PD   Y  L++G C  G ++ A+E F  M   G  
Sbjct: 723 DGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLE 782

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D ++Y   I G  K  +   A SL  EML+KG  P ++ YN 
Sbjct: 783 LDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNV 825



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 149/324 (45%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
            ++L    +K    +  LS+F ++    L PD+   N ++        +S    V   + 
Sbjct: 473 LDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMG 532

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P  VT+ +L+   C   ++ +   L ++++  GC P+  TY  LINGL + G   
Sbjct: 533 EFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFE 592

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  L  EM           K  A TY+ +  G   +G + +A  L  +M  +  +P V 
Sbjct: 593 QAKGLIGEMLKTG------LKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVA 646

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TY S I G C     ++A     +M+   + P+VV++N ++   C+ G + +A  L + +
Sbjct: 647 TYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDEL 706

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
             I + P    YNTL+DG C  G +  A++L V M + G   D+ +Y IL+NG CK   +
Sbjct: 707 RSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSL 766

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A   + EML +G+      Y T
Sbjct: 767 SMAQEFFDEMLHEGLELDSYAYAT 790


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 163/328 (49%), Gaps = 6/328 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   SF+ L   L K       L++F+ +   GL  D+   N LI+C C++G +     +
Sbjct: 45  PNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRL 104

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +    F  D  T++ L+  L    R  +A  +F+ ++  GC PD   Y  LI+ L +
Sbjct: 105 LHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGK 164

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL L E+M N  G       PD  TY+ + D L   G  +KA   F  MK    
Sbjct: 165 QGKVDEALELLEDM-NRKGIM-----PDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKH 218

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PDVVTY +L+ G       +EA  LF EM      P++ TF  +++ L K G+M++A  
Sbjct: 219 SPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALE 278

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               ++++G  P++ +YN L+ GFC +G+V++  ELF  M    C  D  +Y IL+ G+ 
Sbjct: 279 QSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFS 338

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +      A+ L  EM+ +G  P + TYN
Sbjct: 339 RRGHTSMAMELLQEMVREGHTPALATYN 366



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 145/314 (46%), Gaps = 6/314 (1%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           + +  H     V +++ L   L K       L +F  +   G  PD   YN+LI+C  K 
Sbjct: 106 HHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQ 165

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
           G+V     +L  + R    PD  T+  +I  L +  R  +A + F  ++     PDV TY
Sbjct: 166 GKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTY 225

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            TL+NGL +   T  A +LF+EM          C PD  T+ T+ D L K G ++ A E 
Sbjct: 226 NTLLNGLKKLRRTDEACDLFDEMQANK------CMPDLTTFGTLIDTLAKAGRMEDALEQ 279

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             ++      P+   Y +LI GFC +   ++   LF +M++    P+ +T+ +++    +
Sbjct: 280 SARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSR 339

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G    A  LL+ M++ G  P  + YN L+    + G+V  A  LF  M + G   D+ +
Sbjct: 340 RGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQT 399

Query: 306 YGILINGYCKNKEI 319
           Y  L N    NK +
Sbjct: 400 YSALPNLSTPNKSV 413



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 124/261 (47%), Gaps = 7/261 (2%)

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTGHTIVAL 142
            PD V + +LI G C       A  +F +L+  G CKP+  ++ TL+  LC+      AL
Sbjct: 8   APDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDAL 67

Query: 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
            +F+EM       G   + D    +T+    C+ G + +A+ L   M       DV TY+
Sbjct: 68  AVFQEM------LGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYS 121

Query: 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262
            L+     A    +A  +F  M   G  P+ V +NV+++ L K GK+DEA  LLE M + 
Sbjct: 122 YLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRK 181

Query: 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322
           G+ PD   YN ++D     GR  +A   F  M+      DV +Y  L+NG  K +  + A
Sbjct: 182 GIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEA 241

Query: 323 LSLYSEMLSKGIRPTVVTYNT 343
             L+ EM +    P + T+ T
Sbjct: 242 CDLFDEMQANKCMPDLTTFGT 262



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 1/185 (0%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-NINPDVVTYTSLIRGFCYANDWNEA 217
           C PD + Y+T+  G CK G  D+A ++F ++K E +  P+ V++ +L+   C  +   +A
Sbjct: 7   CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDA 66

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
             +F EM+  G+Q +V   N +++  C+ G + +A RLL  M       D   Y+ LMD 
Sbjct: 67  LAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDA 126

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
               GR  +A E+F +M+  GCM D   Y +LI+   K  +++ AL L  +M  KGI P 
Sbjct: 127 LGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPD 186

Query: 338 VVTYN 342
             TYN
Sbjct: 187 CRTYN 191


>gi|255660986|gb|ACU25662.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 376

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 166/325 (51%), Gaps = 6/325 (1%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
            V SFNI+   L  N   D V+S+++ +   G   D  TY IL++ FCK G +     VL
Sbjct: 58  SVSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVL 117

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
               +     DA  ++++I GLC E+ +  A ++   +   GCKP+   Y TLINGL   
Sbjct: 118 EMAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGA 177

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A+ +F EM        + C P+ ITY+T+ +GLCK     +A  L  ++ D+ +N
Sbjct: 178 SKFEDAIRVFREMGT------MHCSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLN 231

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P V+TY+ L++G C  +   +A  L+ ++  +G +P+V   NV+++ LC  GKM  A  L
Sbjct: 232 PGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSL 291

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M +    P+   +NTLM+GF   G +  A  ++  +  NG   D+ SY I + G C 
Sbjct: 292 YFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCS 351

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVT 340
              I  A+    + ++K I  T +T
Sbjct: 352 CNRISDAILFLHDAVTKKIVLTKIT 376



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 154/289 (53%), Gaps = 6/289 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           ++NI++      G+V     +   + +S F  D++T+  L+ G C    I ++  +    
Sbjct: 61  SFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              G   D F Y+ +INGLC+  +   A+++       NG     CKP+A  Y+T+ +GL
Sbjct: 121 EQKGGVLDAFAYSAMINGLCKEANLDRAVSVL------NGMIKSGCKPNAHVYNTLINGL 174

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
                 + A  +F +M   + +P+++TY +LI G C    + EA  L  E++D+G+ P V
Sbjct: 175 VGASKFEDAIRVFREMGTMHCSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGV 234

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           +T++++M  LC + K+++A +L   +   G +PD  ++N L+ G C  G++  A  L+  
Sbjct: 235 ITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFD 294

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M    C  ++ S+  L+ G+ K+ +I  AL +++ +L  G+ P +++YN
Sbjct: 295 MNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343



 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 161/310 (51%), Gaps = 7/310 (2%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D    ++K +    + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNIM 65

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++GL    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++ E MA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE-MAEQKG 124

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
             GV+   DA  YS + +GLCKE  +D+A  +   M      P+   Y +LI G   A+ 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +F EM      PN++T+N ++N LCKN    EA  L++ ++  G+ P    Y+ 
Sbjct: 180 FEDAIRVFREMGTMHCSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSM 239

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           LM G CL  +V +A +L+  + S G   DV  + +LI+G C   +++ ALSLY +M    
Sbjct: 240 LMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWK 299

Query: 334 IRPTVVTYNT 343
             P +V++NT
Sbjct: 300 CAPNLVSHNT 309



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 11/247 (4%)

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFG 156
           C    I  A  ++ ++      PD   Y  ++NG  R         L+E M + GN    
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVS 60

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
                   +++ +  GL   G VD+   ++  MK      D +TY  L+ GFC  N + +
Sbjct: 61  --------SFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFC-KNGYID 111

Query: 217 AKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
                +EM +Q G   +   ++ ++N LCK   +D A  +L  MI+ G +P+A VYNTL+
Sbjct: 112 KSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLI 171

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +G     +   A  +F  M +  C  ++ +Y  LING CKN+    A +L  E+L KG+ 
Sbjct: 172 NGLVGASKFEDAIRVFREMGTMHCSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLN 231

Query: 336 PTVVTYN 342
           P V+TY+
Sbjct: 232 PGVITYS 238



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G +D A+ ++ ++ +  ++PD V Y +++ G+       +   L+ EMM      +V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELW-EMMGSEGNRSV 59

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            +FN++M  L  NGK+DE   + ELM + G   D+  Y  L+ GFC  G ++++  +   
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            E  G + D F+Y  +ING CK   ++ A+S+ + M+  G +P    YNT
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNT 169



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 7/172 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M  MH SP  + ++N L   L KN+ +    +L K L   GL P + TY++L+   
Sbjct: 186 VFREMGTMHCSPN-IITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGL 244

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   +V     +  ++    F PD      LI GLC+  ++  A +L+  +  + C P++
Sbjct: 245 CLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNL 304

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
            ++ TL+ G  + G    AL ++  +   NG      +PD I+Y+    GLC
Sbjct: 305 VSHNTLMEGFYKDGDIRNALVIWARILR-NG-----LEPDIISYNITLKGLC 350



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
            P V   N+L   L         LSL+  +N     P+L ++N L+  F K G +    V
Sbjct: 266 KPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           +  RILR+   PD +++   +KGLC+ +RI +A
Sbjct: 326 IWARILRNGLEPDIISYNITLKGLCSCNRISDA 358


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 176/397 (44%), Gaps = 78/397 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N++   L K +     +  F+ +      PD+ TYN L+   CK GRV+    +
Sbjct: 68  PDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSL 123

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
            G +  +  TP  VT+T+LI   C   +   A  L   + +  C P V++Y ++INGLC+
Sbjct: 124 FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 183

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  LFEEM          CKPD +TY+T+  GLC +  + +AK+L   M +   
Sbjct: 184 NRKVDQAYQLFEEMKLAG------CKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGF 237

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV---------------- 238
            PD +T+T+LI G C  +   EA  LF  M  QG  P++VT  V                
Sbjct: 238 QPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALS 297

Query: 239 -----------------IMNELCKNGKMDEASRLLE------------------------ 257
                            I  EL +    D A+RLL+                        
Sbjct: 298 VVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDW 357

Query: 258 -----------LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
                       M++ G+ PD   YN L+DGFC   R++ A+++   M+ +G   ++ +Y
Sbjct: 358 KEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTY 417

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             L+  +C+  ++E    L   M+S+G +P V T++T
Sbjct: 418 NTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWST 454



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 161/322 (50%), Gaps = 14/322 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+  +   L KN+  D    LF+ +   G  PD  TYN LI+  C   R+     +
Sbjct: 169 PTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDL 228

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ + F PD +TFT+LI+GLC   RI EA  LF  +   GC PD+ T+T L++ LC 
Sbjct: 229 LTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCI 288

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL++              C    I Y+ I   L +    D+A  L  KM    +
Sbjct: 289 LRKLRPALSVVRNYP--------ACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGV 340

Query: 195 NPDVVTYTSLIRGFCYANDWNE---AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
            P+VVTYT+  +G     DW E   A   F  M++QG++P++V +NV+++  CK  ++D 
Sbjct: 341 PPNVVTYTAFFKGL---GDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDM 397

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A +++  M Q G+ P+   YNTL+   C  G+V    EL  +M S G   DV ++  L+ 
Sbjct: 398 AEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVA 457

Query: 312 GYCKNKEIEGALSLYSEMLSKG 333
           G     + + A S  +  +S+G
Sbjct: 458 GLFMVGQADAAYSFLNLAMSQG 479



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 167/397 (42%), Gaps = 78/397 (19%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+  L   L +    D   S    +    L PD++TYN++I+  CK  R+S     
Sbjct: 33  PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAI-- 90

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG----------------- 117
                 +   PD VT+ +L+ GLC   R+ +A +LF  +   G                 
Sbjct: 91  --EFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 148

Query: 118 ------------------CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                             C P V++Y ++INGLC+      A  LFEEM          C
Sbjct: 149 MCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAG------C 202

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           KPD +TY+T+  GLC +  + +AK+L   M +    PD +T+T+LI G C  +   EA  
Sbjct: 203 KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFV 262

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELC---------------------------------KN 246
           LF  M  QG  P++VT  V++++LC                                 + 
Sbjct: 263 LFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIFRELGRR 322

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
              D A+RLL+ M + GV P+   Y     G        RA   F  M   G   D+ +Y
Sbjct: 323 RGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAY 382

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +L++G+CK   ++ A  +   M   G+ P +VTYNT
Sbjct: 383 NVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNT 419



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 145/289 (50%), Gaps = 10/289 (3%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           T N L++   +  R     VV  RI      P+A+++  L+K LC   +I +A +   ++
Sbjct: 2   TCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEM 61

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
                 PDVFTY  +I+ LC+      A+  FE M           +PD +TY+T+  GL
Sbjct: 62  AREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMP----------EPDVVTYNTLLGGL 111

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK G V +A  LF  M+   I P  VTYT+LI  FC    +  A  L   M  +   P V
Sbjct: 112 CKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTV 171

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            ++  I+N LCKN K+D+A +L E M   G +PD   YNTL+ G C+  R++ AK+L   
Sbjct: 172 YSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTV 231

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M  NG   D  ++  LI G C    I+ A  L+  M  +G  P +VT+ 
Sbjct: 232 MVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHT 280



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 10/305 (3%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
           N L   L + +  + ++ +F+R+ S    P+  +Y  L+   C+ G++      +  + R
Sbjct: 4   NALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAR 63

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
               PD  T+  +I  LC   RI  A   F  +     +PDV TY TL+ GLC+ G    
Sbjct: 64  EKLVPDVFTYNVVIDTLCKARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQ 119

Query: 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
           A +LF  M       G    P  +TY+T+ D  CK    + A  L   M     +P V +
Sbjct: 120 ACSLFGSME------GAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYS 173

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y S+I G C     ++A  LF EM   G +P+ VT+N +++ LC   ++ EA  LL +M+
Sbjct: 174 YCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMV 233

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
           + G +PD   +  L++G C T R+  A  LF  M   GC  D+ ++ +L++  C  +++ 
Sbjct: 234 ENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLR 293

Query: 321 GALSL 325
            ALS+
Sbjct: 294 PALSV 298



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 101/189 (53%), Gaps = 4/189 (2%)

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
           F   CKP+A++Y  +   LC+ G +DKA     +M  E + PDV TY  +I   C A   
Sbjct: 27  FSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRI 86

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           + A    IE  +   +P+VVT+N ++  LCKNG++ +A  L   M   G+ P    Y TL
Sbjct: 87  SRA----IEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTL 142

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +D FC   +   A  L   M S  C   V+SY  +ING CKN++++ A  L+ EM   G 
Sbjct: 143 IDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGC 202

Query: 335 RPTVVTYNT 343
           +P  VTYNT
Sbjct: 203 KPDRVTYNT 211



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 1/140 (0%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           PP V ++   F  L   K        F+R+   G+ PD+  YN+L++ FCK  R+     
Sbjct: 341 PPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEK 400

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           ++  + +S   P+ VT+ +L+   C + ++     L   + + G +PDV T++TL+ GL 
Sbjct: 401 MVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLF 460

Query: 134 RTGHTIVALNLFEEMANGNG 153
             G    A + F  +A   G
Sbjct: 461 MVGQADAAYS-FLNLAMSQG 479



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           VT N +++ L +  + ++   +   +     +P+A  Y  L+   C TG++++A      
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAE 60

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M     + DVF+Y ++I+  CK + I  A+  +  M      P VVTYNT
Sbjct: 61  MAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNT 106


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 167/340 (49%), Gaps = 9/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R       +C +N L     + K  D V  + K + + G+ P + TY IL++  
Sbjct: 89  LLDEMPRHGVKVNALC-YNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGL 147

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
                ++    V   +     + D   ++S+I   C    +  A+ +F +    G +P+ 
Sbjct: 148 SAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNE 207

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            TY  LING C+ G    A  L  +M   G G        + I ++T+ DG C++  VDK
Sbjct: 208 HTYGALINGFCKIGQMEAAEMLVTDMQVRGVG-------INQIVFNTMIDGYCRKNMVDK 260

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A E+ + M+   I  DV TY +L  G   AN  +EAK L   M+++GV+PN V++  +++
Sbjct: 261 ALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLIS 320

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             C  G M EA RL   M   G  P    YN +MDG+   G +  A+     ME  G + 
Sbjct: 321 IHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVP 380

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           D++SY  L++G+C N +++ AL L+ EM  +G +P +V Y
Sbjct: 381 DIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAY 420



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 162/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL   L+  +    V ++F+ + S  L  D+Y Y+ +IN +C+ G V     V
Sbjct: 135 PTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEV 194

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               + +   P+  T+ +LI G C   ++  A  L T ++  G   +   + T+I+G CR
Sbjct: 195 FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCR 254

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL +   M     E       D  TY+T+  GL +   +D+AK L   M ++ +
Sbjct: 255 KNMVDKALEIKMIMEKMGIEL------DVYTYNTLACGLRRANRMDEAKNLLRIMIEKGV 308

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V+YT+LI   C   D  EA+ LF EM   G +P++VT+NV+M+   K G + EA R
Sbjct: 309 RPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAER 368

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M + G+ PD   Y  L+ G C+ G+V+ A  LF  M+  G   ++ +Y  LI+G  
Sbjct: 369 FKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLA 428

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K    E A  LY  ML  G+ P    Y+ 
Sbjct: 429 KEGRSEEAFQLYDNMLGDGLTPDDALYSA 457



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 11/281 (3%)

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTS---LIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           G +     +L +   SC  PD+VT  S   ++ G C   R+  A  L  ++   G K + 
Sbjct: 45  GHLDTAADLLKQAATSC--PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNA 102

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y +L++   R         + + M N   E      P   TY+ + DGL     + K 
Sbjct: 103 LCYNSLLDAYTREKDDDRVAEMLKVMENEGIE------PTVGTYTILVDGLSAARDITKV 156

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F +MK +N++ DV  Y+S+I  +C A +   A  +F E +  G++PN  T+  ++N 
Sbjct: 157 EAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALING 216

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G+M+ A  L+  M   GV  +  V+NT++DG+C    V++A E+ + ME  G   D
Sbjct: 217 FCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELD 276

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V++Y  L  G  +   ++ A +L   M+ KG+RP  V+Y T
Sbjct: 277 VYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTT 317



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 6/235 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN +     +    D  L +   +  +G+  D+YTYN L     +  R+     +L  ++
Sbjct: 245 FNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMI 304

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ V++T+LI   C E  ++EA  LF ++   G +P + TY  +++G  + G   
Sbjct: 305 EKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIR 364

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A     EM     + G+V  PD  +Y+ +  G C  G VD A  LF +MK     P++V
Sbjct: 365 EAERFKNEME----KKGLV--PDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLV 418

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            YT+LI G        EA  L+  M+  G+ P+   ++ ++  L  + K +   R
Sbjct: 419 AYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQNVKPR 473



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 38/88 (43%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+  L      N   D  L LF+ +   G  P+L  Y  LI+   K GR    F +
Sbjct: 380 PDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQL 439

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESR 102
              +L    TPD   +++L+  L  + +
Sbjct: 440 YDNMLGDGLTPDDALYSALVGSLHTDKK 467


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 172/351 (49%), Gaps = 17/351 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD M   +   P   +FNIL     KN   D     FK ++     PD+ TYN L++  
Sbjct: 154 VFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGL 213

Query: 63  CKMGRVSPGFVVLGRILRSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           C+ G+V     V+  +++     +PD VT+T+L++G C +  I EA  +F ++ + G KP
Sbjct: 214 CRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKP 273

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGN-GEFGVVCKPDAITYSTITDGLCKEGFV 179
           +  TY TLI GLC     +   +  +E+  G  G  G V  PD  TY+T+ +  C  G  
Sbjct: 274 NDITYNTLIKGLCE----VQKFDKIKEILGGAVGGRGFV--PDTCTYNTLMNAQCDAGNF 327

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF-------IEMMDQGVQPN 232
           D+A ++F KMK+  + PD  TY+ LIR  C   D+  A+ LF       I + D G  P 
Sbjct: 328 DEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPL 387

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V  +N I + LCKNGK  +A R+   +++ G + D   Y TL+ G C  G      +L +
Sbjct: 388 VAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQ-DPPSYKTLIIGHCKEGTFEAGYKLLL 446

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M     + D  +Y +LING+ +  E   A      ML     P    +++
Sbjct: 447 FMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHS 497



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 162/312 (51%), Gaps = 13/312 (4%)

Query: 33  YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS-CFTPDAVTFT 91
           ++  + LF  + S G+ P + T+N L+    K GR +    V   +  +   TPD  TF 
Sbjct: 113 FNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFN 172

Query: 92  SLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151
            LI+G C  S + E    F ++  F C+PDV TY TL++GLCR G   +A N+ + M   
Sbjct: 173 ILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKK 232

Query: 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
             +      PD +TY+T+  G C +  +D+A  +F +M    + P+ +TY +LI+G C  
Sbjct: 233 MKDLS----PDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEV 288

Query: 212 NDWNEAK-CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
             +++ K  L   +  +G  P+  T+N +MN  C  G  DEA ++ + M ++ V+PD++ 
Sbjct: 289 QKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSAT 348

Query: 271 YNTLMDGFCLTGRVNRAKELF-------VSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
           Y+ L+   C  G   RA++LF       + +  +GC   V +Y  + +  CKN +   A 
Sbjct: 349 YSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAE 408

Query: 324 SLYSEMLSKGIR 335
            ++ +++ KG +
Sbjct: 409 RVFRQLMKKGTQ 420



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALN-LFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
           G   D  +Y  +++ L R G+  +A N LF      NG      K +    +T+      
Sbjct: 54  GFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGS----VKIEDRFCNTLLRSYGN 109

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVV 234
            G  ++A +LF  MK   ++P V+T+ SL+         N A  +F EM    GV P+  
Sbjct: 110 AGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTY 169

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           TFN+++   CKN  +DE  R  + M +    PD   YNTL+DG C  G+V  A  +   M
Sbjct: 170 TFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGM 229

Query: 295 --ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +      DV +Y  L+ GYC  +EI+ AL ++ EM+S+G++P  +TYNT
Sbjct: 230 VKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNT 280



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 144/339 (42%), Gaps = 19/339 (5%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFK-RLNSIGLFPDLYTYNILINC 61
           +F+ M+     P  + ++N L   L + + +D +  +    +   G  PD  TYN L+N 
Sbjct: 262 VFEEMVSRGLKPNDI-TYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNA 320

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL-------R 114
            C  G       +  ++      PD+ T++ LI+ LC       A  LF KL       R
Sbjct: 321 QCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLR 380

Query: 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
             GC P V  Y  + + LC+ G T  A  +F ++     +       D  +Y T+  G C
Sbjct: 381 DDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQ-------DPPSYKTLIIGHC 433

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           KEG  +   +L L M   +  PD  TY  LI GF    +   A      M+     P   
Sbjct: 434 KEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTS 493

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
            F+ I++EL KN    E++  + LMI   +R + ++    M     +G   +A ++   +
Sbjct: 494 VFHSILSELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAFQIVELL 553

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
             NG M D+     LI   C+N ++  A  + S  L KG
Sbjct: 554 YDNGYMVDMEE---LIGFICQNGKLLDAQKMLSFCLEKG 589



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 122/353 (34%), Gaps = 83/353 (23%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG---RVSPG 71
           P  C++N L        ++D  L +FK++  + + PD  TY++LI   C+ G   R    
Sbjct: 309 PDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQL 368

Query: 72  FVVLGR---ILRS--CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--------- 117
           F  L     +LR   C TP    +  +   LC   +  +A  +F +L   G         
Sbjct: 369 FDKLSDEDILLRDDGC-TPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPSYKT 427

Query: 118 -----CK--------------------PDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
                CK                    PD  TY  LING  + G  I+A    E M   +
Sbjct: 428 LIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSS 487

Query: 153 GEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR------ 206
                   P    + +I   L K  F  ++    + M D  I  ++   T  +R      
Sbjct: 488 ------YLPKTSVFHSILSELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSG 541

Query: 207 -------------------------GF-CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
                                    GF C      +A+ +    +++G   ++   NV++
Sbjct: 542 LRIKAFQIVELLYDNGYMVDMEELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVI 601

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
             LCK  +  EA  L  ++++       S    L       GR   AK  FVS
Sbjct: 602 EGLCKMKRPLEAFGLYYMLVEKSNHQQLSCLEGLRTALEAGGRSEEAK--FVS 652



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 43/282 (15%)

Query: 5   DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG----------------- 47
           D +LR     P V ++N +F  L KN        +F++L   G                 
Sbjct: 376 DILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPSYKTLIIGHCKE 435

Query: 48  ----------LF-------PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
                     LF       PD  TY +LIN F + G     +  L R+L+S + P    F
Sbjct: 436 GTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVF 495

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
            S++  L       E+A+    +     + ++   T  +  L  +G  I A  + E + +
Sbjct: 496 HSILSELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAFQIVELLYD 555

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
            NG          +    +   +C+ G +  A+++     ++  N D+     +I G C 
Sbjct: 556 -NGYM--------VDMEELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLCK 606

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
                EA  L+  ++++     +     +   L   G+ +EA
Sbjct: 607 MKRPLEAFGLYYMLVEKSNHQQLSCLEGLRTALEAGGRSEEA 648


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 155/295 (52%), Gaps = 6/295 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
            L PD   Y +LI+ +C+ G++     +L  +LR     +     SLI G C    I EA
Sbjct: 327 ALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEA 386

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             + T++  +  KPD ++Y TL++G CR GHT  A NL ++M     E      P  +TY
Sbjct: 387 EGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE------PTVLTY 440

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+  GLC+ G  D A +++  M    + PD V Y++L+ G     ++  A  L+ +++ 
Sbjct: 441 NTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILA 500

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G   + +TFN +++ LCK GKM EA  + + M  +G  PD   Y TL+DG+C    V +
Sbjct: 501 RGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQ 560

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           A ++  +ME       +  Y  LI+G  K++ +     L +EM  +G+ P +VTY
Sbjct: 561 AFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTY 615



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 177/359 (49%), Gaps = 30/359 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V   +I+     K+   D      K++ ++G+ P++ TY+ LIN +  +G V     V
Sbjct: 224 PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGV 283

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPDVFTYTTLINGLC 133
           L  +     + + VT+T LIKG C + ++ EA  +   ++      PD   Y  LI+G C
Sbjct: 284 LKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYC 343

Query: 134 RTGHTIVALNLFEEM---------------ANG---NGEF----GVVC-------KPDAI 164
           RTG    A+ L +EM                NG    GE     GV+        KPD+ 
Sbjct: 344 RTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSY 403

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           +Y+T+ DG C+EG   +A  L  KM  E I P V+TY +L++G C    +++A  ++  M
Sbjct: 404 SYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM 463

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           M +GV P+ V ++ +++ L K    + AS L + ++  G       +NT++ G C  G++
Sbjct: 464 MKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKM 523

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A+E+F  M+  GC  D  +Y  LI+GYCK   +  A  +   M  + I P++  YN+
Sbjct: 524 VEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNS 582



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 175/386 (45%), Gaps = 61/386 (15%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FN +   L K         +F ++  +G  PD  TY  LI+ +CK   V   F V G +
Sbjct: 509 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 568

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY------------- 125
            R   +P    + SLI GL    R++E   L T++   G  P++ TY             
Sbjct: 569 EREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 628

Query: 126 ----------------------TTLINGLCRTGHTIVALNLFEEMAN------------G 151
                                 +T+++GL R G    A  L ++M +             
Sbjct: 629 DKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKS 688

Query: 152 NGEFGVVCK--------------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
           +  +  + K              P+ I Y+    GLCK G VD A+  F  +  +   PD
Sbjct: 689 DIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPD 748

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
             TY +LI G+  A + +EA  L  EM+ +G+ PN+VT+N ++N LCK+  +D A RL  
Sbjct: 749 NFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFH 808

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            + Q G+ P+   YNTL+DG+C  G ++ A +L   M   G    V +Y  LING CK+ 
Sbjct: 809 KLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHG 868

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
           +IE ++ L ++M+  G+   ++ Y T
Sbjct: 869 DIERSMKLLNQMIKAGVDSKLIEYCT 894



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 165/329 (50%), Gaps = 5/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S N L   L KN    T   +++++  +G+ PD++  +I++N FCK G+V      
Sbjct: 189 PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGF 248

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      P+ VT+ SLI G  +   +  A  +   +   G   +V TYT LI G C+
Sbjct: 249 VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 308

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  ++  E++  G  E   +  PD   Y  + DG C+ G +D A  L  +M    +
Sbjct: 309 Q----CKMDEAEKVLRGMQEEAALV-PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGL 363

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++    SLI G+C   + +EA+ +   M+D  ++P+  ++N +++  C+ G   EA  
Sbjct: 364 KTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 423

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+Q G+ P    YNTL+ G C  G  + A +++  M   G   D   Y  L++G  
Sbjct: 424 LCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLF 483

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K +  EGA +L+ ++L++G   + +T+NT
Sbjct: 484 KMENFEGASTLWKDILARGFTKSRITFNT 512



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 170/396 (42%), Gaps = 73/396 (18%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+N L     +  H     +L  ++   G+ P + TYN L+   C++G       +
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 459

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    PD V +++L+ GL        A+ L+  + A G      T+ T+I+GLC+
Sbjct: 460 WHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCK 519

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  +F++M +      + C PD ITY T+ DG CK   V +A ++   M+ E I
Sbjct: 520 MGKMVEAEEIFDKMKD------LGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPI 573

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN-------- 246
           +P +  Y SLI G   +    E   L  EM  +G+ PN+VT+  +++  CK         
Sbjct: 574 SPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFS 633

Query: 247 ---------------------------GKMDEASRLLELMIQIGVRPDAS---------- 269
                                      G++DEA+ L++ M+  G  PD            
Sbjct: 634 SYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYA 693

Query: 270 ----------------------VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
                                 VYN  + G C TG+V+ A+  F  +   G + D F+Y 
Sbjct: 694 AIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYC 753

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LI+GY     ++ A  L  EML +G+ P +VTYN 
Sbjct: 754 TLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNA 789



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 159/325 (48%), Gaps = 7/325 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F+++     +       L +F  +   G  P L + N L+N   K G       V  +++
Sbjct: 159 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 218

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R    PD    + ++   C + ++ EAA    K+   G +P++ TY +LING    G   
Sbjct: 219 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 278

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-NINPDV 198
            A  + + M+    E GV    + +TY+ +  G CK+  +D+A+++   M++E  + PD 
Sbjct: 279 AAKGVLKFMS----EKGV--SRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDE 332

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
             Y  LI G+C     ++A  L  EM+  G++ N+   N ++N  CK G++ EA  ++  
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+   ++PD+  YNTL+DG+C  G  + A  L   M   G    V +Y  L+ G C+   
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
            + AL ++  M+ +G+ P  V Y+T
Sbjct: 453 FDDALQIWHLMMKRGVAPDEVGYST 477



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 166/366 (45%), Gaps = 38/366 (10%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +   P  P +  +N L   L K++    V  L   +   GL P++ TY  LI+ +CK G 
Sbjct: 568 MEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGM 627

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG---------- 117
           +   F     +  +  + + +  ++++ GL    RI EA  L  K+   G          
Sbjct: 628 LDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLK 687

Query: 118 ------------------CK----PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
                             CK    P+   Y   I GLC+TG    A   F  ++      
Sbjct: 688 SDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLK---- 743

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
           G V  PD  TY T+  G    G VD+A  L  +M    + P++VTY +LI G C + + +
Sbjct: 744 GFV--PDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVD 801

Query: 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
            A+ LF ++  +G+ PNVVT+N +++  CK G MD A +L + MI+ G+ P    Y+ L+
Sbjct: 802 RAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALI 861

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +G C  G + R+ +L   M   G    +  Y  L+ GY ++ E++    LY  M  + + 
Sbjct: 862 NGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIRCLS 921

Query: 336 PTVVTY 341
            T +++
Sbjct: 922 TTAISH 927



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 177/360 (49%), Gaps = 26/360 (7%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD-----------L 52
           F ++ +     P V S+  L   L++ + YD   +   +L  +  F D           +
Sbjct: 89  FQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGV 148

Query: 53  Y--------TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104
           Y         +++++  + + G       V   + +    P   +  SL+  L       
Sbjct: 149 YREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETH 208

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
            A  ++ ++   G  PDVF  + ++N  C+ G    A    ++M N     GV  +P+ +
Sbjct: 209 TAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMEN----LGV--EPNIV 262

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY ++ +G    G V+ AK +   M ++ ++ +VVTYT LI+G+C     +EA+ +   M
Sbjct: 263 TYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGM 322

Query: 225 MDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
            ++  + P+   + V+++  C+ GK+D+A RLL+ M+++G++ +  + N+L++G+C  G 
Sbjct: 323 QEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGE 382

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A+ +   M       D +SY  L++GYC+      A +L  +ML +GI PTV+TYNT
Sbjct: 383 IHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNT 442



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 167/357 (46%), Gaps = 41/357 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ +L     +    D  + L   +  +GL  +L+  N LIN +CK G +     V
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + R++     PD+ ++ +L+ G C E    EA  L  K+   G +P V TY TL+ GLCR
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL--------------------- 173
            G    AL ++  M     + GV   PD + YST+ DGL                     
Sbjct: 450 VGAFDDALQIWHLMM----KRGVA--PDEVGYSTLLDGLFKMENFEGASTLWKDILARGF 503

Query: 174 --------------CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                         CK G + +A+E+F KMKD   +PD +TY +LI G+C A++  +A  
Sbjct: 504 TKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFK 563

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +   M  + + P++  +N +++ L K+ ++ E + LL  M   G+ P+   Y  L+DG+C
Sbjct: 564 VKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWC 623

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
             G +++A   +  M  NG   ++     +++G  +   I+ A  L  +M+  G  P
Sbjct: 624 KEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFP 680


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 185/379 (48%), Gaps = 50/379 (13%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M+R  PSP  V +F+ L     K    D   SL+  +   G+ PDL  Y+ILIN   
Sbjct: 263 FDMMVRSGPSPNLV-TFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLF 321

Query: 64  KMGRVSPG-------------------------FVVLG----------RILRSCFTPDAV 88
           + G++  G                         +V +G          R+L+   +P+ V
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           T++ LI GLC   R++EA  +F ++   G +P V TY++LI+G C++          E +
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKS----------ENL 431

Query: 149 ANGNGEFGVVCK----PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
            +G G +G++ +    PD +  S + +GL ++G +D+A   F +     +  +   + +L
Sbjct: 432 RDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNAL 491

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I G        +   ++I M    V P+VVT+ V++  L + G++DEA  L   +++ G 
Sbjct: 492 IDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGF 551

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            PD  +Y TL+DGFC         ++F  M+SNG   D+  Y +LIN + +   +E  L 
Sbjct: 552 SPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLE 611

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           L  E++  G+ P +VTYNT
Sbjct: 612 LLREIIKYGLEPDIVTYNT 630



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 170/337 (50%), Gaps = 33/337 (9%)

Query: 37  LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96
           + ++ R+   G+ P++ TY+ILIN  C+ GRV     V G+IL+    P  +T++SLI G
Sbjct: 365 IEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDG 424

Query: 97  LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN------------- 143
            C    + +   L+  +   G  PDV   + LINGL R G    AL              
Sbjct: 425 FCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLN 484

Query: 144 --LFEEMANG----------------NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
             LF  + +G                 G + V+  PD +TY+ +  GL ++G +D+A  L
Sbjct: 485 NYLFNALIDGCFRLKRTRDGLKMYILMGMYKVI--PDVVTYTVLVKGLAEQGRLDEALAL 542

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           F ++  +  +PD + Y +LI GFC   D      +F  M   G+ P++  +NV++N   +
Sbjct: 543 FFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFR 602

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G ++    LL  +I+ G+ PD   YNT++ G+C     ++A +LF  ++      +  +
Sbjct: 603 EGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAIT 662

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + ILI+ YCK+  ++ A+ ++S ML +G  P ++TY+
Sbjct: 663 FTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYS 699



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 172/342 (50%), Gaps = 9/342 (2%)

Query: 1   FCIFDYMLRM-HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           F ++  MLR  H     VCS  +L   L++    D  L  F +    GL  + Y +N LI
Sbjct: 435 FGLYGIMLRKGHVPDVVVCS--MLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALI 492

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +   ++ R   G  +   +      PD VT+T L+KGL  + R+ EA ALF +L   G  
Sbjct: 493 DGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFS 552

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD   Y TLI+G C+       L +F+ M + NG F     PD   Y+ + +   +EG V
Sbjct: 553 PDHIIYCTLIDGFCKKRDPATGLQIFKLMQS-NGIF-----PDICIYNVLINMFFREGCV 606

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +   EL  ++    + PD+VTY ++I G+C    +++A  LF  +     QPN +TF ++
Sbjct: 607 ENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTIL 666

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  CK+G+MD+A  +   M++ G  P+   Y+ L+DG+  T     A EL+  M  +  
Sbjct: 667 IDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRV 726

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             ++ SY ILI+G CK   +E A   +   + + + P V+ Y
Sbjct: 727 SPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAY 768



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 164/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +   N +   L            F  +   G  P+L T++ LIN +CK  R+   F +
Sbjct: 238 PKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSL 297

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD V ++ LI GL    ++ E  +LF+   A G K DV  ++++++   R
Sbjct: 298 YNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVR 357

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ ++  M            P+ +TYS + +GLC+ G V +A  +F ++  + +
Sbjct: 358 VGDLGKAIEVYTRMLKEG------ISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGL 411

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V+TY+SLI GFC + +  +   L+  M+ +G  P+VV  ++++N L + G MDEA R
Sbjct: 412 EPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALR 471

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
                ++ G+  +  ++N L+DG     R     ++++ M     + DV +Y +L+ G  
Sbjct: 472 FFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLA 531

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   ++ AL+L+ ++L KG  P  + Y T
Sbjct: 532 EQGRLDEALALFFQLLKKGFSPDHIIYCT 560



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 147/296 (49%), Gaps = 6/296 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++ M+   P V ++ +L   LA+    D  L+LF +L   G  PD   Y  LI+ FCK  
Sbjct: 510 LMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKR 569

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
             + G  +   +  +   PD   +  LI     E  +     L  ++  +G +PD+ TY 
Sbjct: 570 DPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYN 629

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           T+I G C       A+ LFE +  G        +P+AIT++ + D  CK+G +D A  +F
Sbjct: 630 TMICGYCSLKIFSKAIKLFEVLKCGR------TQPNAITFTILIDAYCKDGRMDDAMLIF 683

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M +    P+++TY+ LI G+    +   A  L+ +M+   V PN+V+++++++ LCK 
Sbjct: 684 SSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKK 743

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           G M+EAS   +  I   + PD   Y  L+ G+C  GR+  A  L+  M  NG M D
Sbjct: 744 GLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPD 799



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 139/276 (50%), Gaps = 7/276 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             +F  +L+   SP  +    ++ G   K +   T L +FK + S G+FPD+  YN+LIN
Sbjct: 540 LALFFQLLKKGFSPDHIIYCTLIDG-FCKKRDPATGLQIFKLMQSNGIFPDICIYNVLIN 598

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            F + G V     +L  I++    PD VT+ ++I G C+     +A  LF  L+    +P
Sbjct: 599 MFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQP 658

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  T+T LI+  C+ G    A+ +F  M     E      P+ +TYS + DG  K    +
Sbjct: 659 NAITFTILIDAYCKDGRMDDAMLIFSSMLERGPE------PNILTYSCLIDGYFKTENTE 712

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A EL+ KM  + ++P++V+Y+ LI G C      EA   F   + + + P+V+ + +++
Sbjct: 713 SAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILI 772

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
              CK G++ EA  L + M+  G+ PD  +   L +
Sbjct: 773 RGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAE 808



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 166/346 (47%), Gaps = 31/346 (8%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL------------------YTYNI 57
           PV SF  +   L +++ +D    +F R+  +G F +L                    Y+ 
Sbjct: 88  PVQSFCGIAHVLLRHRMFDPATRVFDRM--VGQFGNLEVLGEFHGSFRNYGSNPSTVYSF 145

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           L++C+C+ G V         + +   +      + ++  L    RI      + ++    
Sbjct: 146 LLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEM---- 201

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           CK  +  Y  + N   + G     LN    +     E G+V  P  +  + I  GLC   
Sbjct: 202 CK-GLGVYEFVFNSFLKRGEVEKGLNFHRALV----ERGLV--PKIVDCNKILKGLCMGN 254

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            +  A + F  M     +P++VT+++LI  +C     +EA  L+  M+++G+ P++V ++
Sbjct: 255 QIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYS 314

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           +++N L + GK++E + L  + +  GV+ D  +++++MD +   G + +A E++  M   
Sbjct: 315 ILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE 374

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   +V +Y ILING C+N  +  A  ++ ++L +G+ P+V+TY++
Sbjct: 375 GISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSS 420



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 147/327 (44%), Gaps = 15/327 (4%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           P   ++ L  C  +N   D  +  F  ++ +G+    Y  + +++      R+    V+L
Sbjct: 139 PSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRID---VIL 195

Query: 76  GRILRSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
                 C         F S +K    E  +    AL  +    G  P +     ++ GLC
Sbjct: 196 ENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVER----GLVPKIVDCNKILKGLC 251

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                 VA + F+ M            P+ +T+ST+ +  CKE  +D+A  L+  M ++ 
Sbjct: 252 MGNQIGVASDFFDMMVRSGPS------PNLVTFSTLINVYCKELRLDEAFSLYNLMIEKG 305

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I PD+V Y+ LI G   A    E   LF   + +GV+ +VV F+ IM+   + G + +A 
Sbjct: 306 IVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAI 365

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +   M++ G+ P+   Y+ L++G C  GRV  A  +F  +   G    V +Y  LI+G+
Sbjct: 366 EVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGF 425

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
           CK++ +     LY  ML KG  P VV 
Sbjct: 426 CKSENLRDGFGLYGIMLRKGHVPDVVV 452


>gi|255661014|gb|ACU25676.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 376

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 173/340 (50%), Gaps = 8/340 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F +++ M R       V SFNI+   L  N   D V+S+++ +   G   D  TY IL++
Sbjct: 45  FKLWELMGR--EGSRSVSSFNIMMRGLFDNAKVDEVISIWELMKESGYVEDSITYGILVH 102

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FCK G ++    VL    R     DA  ++++I GLC E+++ +A ++   +   GCKP
Sbjct: 103 GFCKNGYLNKSLHVLEIAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKP 162

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +   Y  LINGL        A+ +  EM  G   F     P  +TYST+ +GLCK     
Sbjct: 163 NAHVYNALINGLVGASKFEDAIRVLREM--GTTHF----SPTVVTYSTLINGLCKGERFG 216

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A +L  +M D+ +NP V+TY+ LI+G C      +A  L+ +++ +G +P+V   N+++
Sbjct: 217 EAYDLVKEMLDKGLNPSVITYSLLIKGLCLDCKVEKAFQLWNQVISKGFKPDVQMHNIMI 276

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LC  GKM  A  L   M +    P+   +NTLM+GF   G    A  ++  +  NG  
Sbjct: 277 HGLCSVGKMQLALSLYFNMNRWDCAPNLVTHNTLMEGFYKDGDFRNALVIWARIMRNGLQ 336

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            D+ SY I + G C    I GA+    + + K I  TV+T
Sbjct: 337 PDIISYNITLKGLCSCNRISGAILFLHDAVCKKIVLTVIT 376



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 170/338 (50%), Gaps = 30/338 (8%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D    ++K +    + PD   YN ++N F ++ R+   F  L  ++    +    +F  +
Sbjct: 7   DGAKRVYKEIVESKVSPDAVVYNAMLNGFFRVRRIKDCFK-LWELMGREGSRSVSSFNIM 65

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE------- 146
           ++GL   +++ E  +++  ++  G   D  TY  L++G C+ G+   +L++ E       
Sbjct: 66  MRGLFDNAKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEIAERKGG 125

Query: 147 --------EMANG--------------NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
                    M NG              NG     CKP+A  Y+ + +GL      + A  
Sbjct: 126 VLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAIR 185

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           +  +M   + +P VVTY++LI G C    + EA  L  EM+D+G+ P+V+T+++++  LC
Sbjct: 186 VLREMGTTHFSPTVVTYSTLINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLC 245

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
            + K+++A +L   +I  G +PD  ++N ++ G C  G++  A  L+ +M    C  ++ 
Sbjct: 246 LDCKVEKAFQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWDCAPNLV 305

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++  L+ G+ K+ +   AL +++ ++  G++P +++YN
Sbjct: 306 THNTLMEGFYKDGDFRNALVIWARIMRNGLQPDIISYN 343



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G +D AK ++ ++ +  ++PD V Y +++ GF       +   L+ E+M +    +V
Sbjct: 1   CEIGDIDGAKRVYKEIVESKVSPDAVVYNAMLNGFFRVRRIKDCFKLW-ELMGREGSRSV 59

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            +FN++M  L  N K+DE   + ELM + G   D+  Y  L+ GFC  G +N++  +   
Sbjct: 60  SSFNIMMRGLFDNAKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEI 119

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            E  G + D F+Y  +ING CK  +++ A+S+ + M+  G +P    YN 
Sbjct: 120 AERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNA 169


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 155/295 (52%), Gaps = 6/295 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
            L PD   Y +LI+ +C+ G++     +L  +LR     +     SLI G C    I EA
Sbjct: 293 ALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEA 352

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             + T++  +  KPD ++Y TL++G CR GHT  A NL ++M     E      P  +TY
Sbjct: 353 EGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE------PTVLTY 406

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+  GLC+ G  D A +++  M    + PD V Y++L+ G     ++  A  L+ +++ 
Sbjct: 407 NTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILA 466

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G   + +TFN +++ LCK GKM EA  + + M  +G  PD   Y TL+DG+C    V +
Sbjct: 467 RGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQ 526

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           A ++  +ME       +  Y  LI+G  K++ +     L +EM  +G+ P +VTY
Sbjct: 527 AFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTY 581



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 184/404 (45%), Gaps = 62/404 (15%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D ML+     P V ++N L   L +   +D  L ++  +   G+ PD   Y+ L++
Sbjct: 388 FNLCDKMLQ-EGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLD 446

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
              KM        +   IL   FT   +TF ++I GLC   +++EA  +F K++  GC P
Sbjct: 447 GLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSP 506

Query: 121 DVFTYTTLINGLCRTGHTIVALN-----------------------LFE-----EMANGN 152
           D  TY TLI+G C+  +   A                         LF+     E+ +  
Sbjct: 507 DGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLL 566

Query: 153 GEFGVV-CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211
            E G+    P+ +TY  + DG CKEG +DKA   + +M +  ++ +++  ++++ G    
Sbjct: 567 TEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRL 626

Query: 212 NDWNEAKCLFIEMMDQG--------------------------------VQPNVVTFNVI 239
              +EA  L  +M+D G                                + PN + +N+ 
Sbjct: 627 GRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIA 686

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  LCK GK+D+A R   ++   G  PD   Y TL+ G+   G V+ A  L   M   G 
Sbjct: 687 IAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGL 746

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + ++ +Y  LING CK++ ++ A  L+ ++  KG+ P VVTYNT
Sbjct: 747 VPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNT 790



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 183/371 (49%), Gaps = 31/371 (8%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++  M+R+   P  V   +I+     K+   D      K++ ++G+ P++ TY+ LIN +
Sbjct: 179 VYQQMIRVGIVPD-VFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGY 237

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPD 121
             +G V     VL  +     + + VT+T LIKG C + ++ EA  +   ++      PD
Sbjct: 238 VSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPD 297

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEM---------------ANG---NGEF----GVVC 159
              Y  LI+G CRTG    A+ L +EM                NG    GE     GV+ 
Sbjct: 298 ERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVIT 357

Query: 160 -------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212
                  KPD+ +Y+T+ DG C+EG   +A  L  KM  E I P V+TY +L++G C   
Sbjct: 358 RMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVG 417

Query: 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
            +++A  ++  MM +GV P+ V ++ +++ L K    + AS L + ++  G       +N
Sbjct: 418 AFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFN 477

Query: 273 TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           T++ G C  G++  A+E+F  M+  GC  D  +Y  LI+GYCK   +  A  +   M  +
Sbjct: 478 TMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMERE 537

Query: 333 GIRPTVVTYNT 343
            I P++  YN+
Sbjct: 538 PISPSIEMYNS 548



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 165/329 (50%), Gaps = 5/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S N L   L KN    T   +++++  +G+ PD++  +I++N FCK G+V      
Sbjct: 155 PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGF 214

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      P+ VT+ SLI G  +   +  A  +   +   G   +V TYT LI G C+
Sbjct: 215 VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 274

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  ++  E++  G  E   +  PD   Y  + DG C+ G +D A  L  +M    +
Sbjct: 275 Q----CKMDEAEKVLRGMQEEAALV-PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGL 329

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             ++    SLI G+C   + +EA+ +   M+D  ++P+  ++N +++  C+ G   EA  
Sbjct: 330 KTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 389

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L + M+Q G+ P    YNTL+ G C  G  + A +++  M   G   D   Y  L++G  
Sbjct: 390 LCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLF 449

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K +  EGA +L+ ++L++G   + +T+NT
Sbjct: 450 KMENFEGASTLWKDILARGFTKSRITFNT 478



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 159/325 (48%), Gaps = 7/325 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F+++     +       L +F  +   G  P L + N L+N   K G       V  +++
Sbjct: 125 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 184

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R    PD    + ++   C + ++ EAA    K+   G +P++ TY +LING    G   
Sbjct: 185 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 244

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-NINPDV 198
            A  + + M+    E GV    + +TY+ +  G CK+  +D+A+++   M++E  + PD 
Sbjct: 245 AAKGVLKFMS----EKGV--SRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDE 298

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
             Y  LI G+C     ++A  L  EM+  G++ N+   N ++N  CK G++ EA  ++  
Sbjct: 299 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 358

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+   ++PD+  YNTL+DG+C  G  + A  L   M   G    V +Y  L+ G C+   
Sbjct: 359 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 418

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
            + AL ++  M+ +G+ P  V Y+T
Sbjct: 419 FDDALQIWHLMMKRGVAPDEVGYST 443



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 177/360 (49%), Gaps = 26/360 (7%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD-----------L 52
           F ++ +     P V S+  L   L++ + YD   +   +L  +  F D           +
Sbjct: 55  FQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGV 114

Query: 53  Y--------TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104
           Y         +++++  + + G       V   + +    P   +  SL+  L       
Sbjct: 115 YREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETH 174

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
            A  ++ ++   G  PDVF  + ++N  C+ G    A    ++M N     GV  +P+ +
Sbjct: 175 TAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMEN----LGV--EPNIV 228

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY ++ +G    G V+ AK +   M ++ ++ +VVTYT LI+G+C     +EA+ +   M
Sbjct: 229 TYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGM 288

Query: 225 MDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
            ++  + P+   + V+++  C+ GK+D+A RLL+ M+++G++ +  + N+L++G+C  G 
Sbjct: 289 QEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGE 348

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A+ +   M       D +SY  L++GYC+      A +L  +ML +GI PTV+TYNT
Sbjct: 349 IHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNT 408



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 167/357 (46%), Gaps = 41/357 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ +L     +    D  + L   +  +GL  +L+  N LIN +CK G +     V
Sbjct: 296 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 355

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + R++     PD+ ++ +L+ G C E    EA  L  K+   G +P V TY TL+ GLCR
Sbjct: 356 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 415

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL--------------------- 173
            G    AL ++  M     + GV   PD + YST+ DGL                     
Sbjct: 416 VGAFDDALQIWHLMM----KRGVA--PDEVGYSTLLDGLFKMENFEGASTLWKDILARGF 469

Query: 174 --------------CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                         CK G + +A+E+F KMKD   +PD +TY +LI G+C A++  +A  
Sbjct: 470 TKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFK 529

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +   M  + + P++  +N +++ L K+ ++ E + LL  M   G+ P+   Y  L+DG+C
Sbjct: 530 VKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWC 589

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
             G +++A   +  M  NG   ++     +++G  +   I+ A  L  +M+  G  P
Sbjct: 590 KEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFP 646



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 149/341 (43%), Gaps = 61/341 (17%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FN +   L K         +F ++  +G  PD  TY  LI+ +CK   V   F V G +
Sbjct: 475 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 534

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY------------- 125
            R   +P    + SLI GL    R++E   L T++   G  P++ TY             
Sbjct: 535 EREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 594

Query: 126 ----------------------TTLINGLCRTGHTIVALNLFEEMAN------------G 151
                                 +T+++GL R G    A  L ++M +             
Sbjct: 595 DKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKS 654

Query: 152 NGEFGVVCK--------------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
           +  +  + K              P+ I Y+    GLCK G VD A+  F  +  +   PD
Sbjct: 655 DIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPD 714

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
             TY +LI G+  A + +EA  L  EM+ +G+ PN+VT+N ++N LCK+  +D A RL  
Sbjct: 715 NFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFH 774

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298
            + Q G+ P+   YNTL+DG+C  G ++ A +L   M   G
Sbjct: 775 KLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEG 815



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F + D MLR     P + ++N L   L K+++ D    LF +L+  GLFP++ TYN LI+
Sbjct: 735 FRLRDEMLR-RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLID 793

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTP 85
            +CK+G +   F +  +++    +P
Sbjct: 794 GYCKIGNMDAAFKLKDKMIEEGISP 818


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 155/295 (52%), Gaps = 6/295 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
            L PD   Y +LI+ +C+ G++     +L  +LR     +     SLI G C    I EA
Sbjct: 327 ALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEA 386

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             + T++  +  KPD ++Y TL++G CR GHT  A NL ++M     E      P  +TY
Sbjct: 387 EGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE------PTVLTY 440

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+  GLC+ G  D A +++  M    + PD V Y++L+ G     ++  A  L+ +++ 
Sbjct: 441 NTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILA 500

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G   + +TFN +++ LCK GKM EA  + + M  +G  PD   Y TL+DG+C    V +
Sbjct: 501 RGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQ 560

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           A ++  +ME       +  Y  LI+G  K++ +     L +EM  +G+ P +VTY
Sbjct: 561 AFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTY 615



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 176/359 (49%), Gaps = 30/359 (8%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V   +I+     K+   D      K++ ++G+ P++ TY+ LIN +  +G V     V
Sbjct: 224 PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGV 283

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPDVFTYTTLINGLC 133
           L  +     + + VT+T LIKG C + ++ EA  +   ++      PD   Y  LI+G C
Sbjct: 284 LKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYC 343

Query: 134 RTGHTIVALNLFEEM---------------ANG---NGEF----GVVC-------KPDAI 164
           RTG    A+ L +EM                NG    GE     GV+        KPD+ 
Sbjct: 344 RTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSY 403

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           +Y+T+ DG C+EG   +A  L  KM  E I P V+TY +L++G C    +++A  ++  M
Sbjct: 404 SYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLM 463

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           M  GV P+ V ++ +++ L K    + AS L + ++  G       +NT++ G C  G++
Sbjct: 464 MKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKM 523

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             A+E+F  M+  GC  D  +Y  LI+GYCK   +  A  +   M  + I P++  YN+
Sbjct: 524 VEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNS 582



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 175/386 (45%), Gaps = 61/386 (15%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +FN +   L K         +F ++  +G  PD  TY  LI+ +CK   V   F V G +
Sbjct: 509 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 568

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY------------- 125
            R   +P    + SLI GL    R++E   L T++   G  P++ TY             
Sbjct: 569 EREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 628

Query: 126 ----------------------TTLINGLCRTGHTIVALNLFEEMAN------------G 151
                                 +T+++GL R G    A  L ++M +             
Sbjct: 629 DKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKS 688

Query: 152 NGEFGVVCK--------------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
           +  +  + K              P+ I Y+    GLCK G VD A+  F  +  +   PD
Sbjct: 689 DIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPD 748

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
             TY +LI G+  A + +EA  L  EM+ +G+ PN+VT+N ++N LCK+  +D A RL  
Sbjct: 749 NFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFH 808

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            + Q G+ P+   YNTL+DG+C  G ++ A +L   M   G    V +Y  LING CK+ 
Sbjct: 809 KLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHG 868

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
           +IE ++ L ++M+  G+   ++ Y T
Sbjct: 869 DIERSMKLLNQMIKAGVDSKLIEYCT 894



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 170/396 (42%), Gaps = 73/396 (18%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+N L     +  H     +L  ++   G+ P + TYN L+   C++G       +
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 459

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    PD V +++L+ GL        A+ L+  + A G      T+ T+I+GLC+
Sbjct: 460 WHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCK 519

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  +F++M +      + C PD ITY T+ DG CK   V +A ++   M+ E I
Sbjct: 520 MGKMVEAEEIFDKMKD------LGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXI 573

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN-------- 246
           +P +  Y SLI G   +    E   L  EM  +G+ PN+VT+  +++  CK         
Sbjct: 574 SPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFS 633

Query: 247 ---------------------------GKMDEASRLLELMIQIGVRPDAS---------- 269
                                      G++DEA+ L++ M+  G  PD            
Sbjct: 634 SYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYA 693

Query: 270 ----------------------VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
                                 VYN  + G C TG+V+ A+  F  +   G + D F+Y 
Sbjct: 694 AIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYC 753

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LI+GY     ++ A  L  EML +G+ P +VTYN 
Sbjct: 754 TLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNA 789



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 158/325 (48%), Gaps = 7/325 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F+++     +       L +F  +   G  P L + N L+N   K G       V  +++
Sbjct: 159 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 218

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R    PD    + ++   C + ++ EAA    K+   G +P++ TY +LING    G   
Sbjct: 219 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 278

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-NINPDV 198
            A  + + M+    E GV    + +TY+ +  G CK+  +D+A+++   M++E  + PD 
Sbjct: 279 AAKGVLKFMS----EKGV--SRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDE 332

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
             Y  LI G+C     ++A  L  EM+  G++ N+   N ++N  CK G++ EA  ++  
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M+   ++PD+  YNTL+DG+C  G  + A  L   M   G    V +Y  L+ G C+   
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
            + AL ++  M+  G+ P  V Y+T
Sbjct: 453 FDDALQIWHLMMKXGVAPDEVGYST 477



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 177/360 (49%), Gaps = 26/360 (7%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD-----------L 52
           F ++ +     P V S+  L   L++ + YD   +   +L  +  F D           +
Sbjct: 89  FQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGV 148

Query: 53  Y--------TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104
           Y         +++++  + + G       V   + +    P   +  SL+  L       
Sbjct: 149 YREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETH 208

Query: 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164
            A  ++ ++   G  PDVF  + ++N  C+ G    A    ++M N     GV  +P+ +
Sbjct: 209 TAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMEN----LGV--EPNIV 262

Query: 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
           TY ++ +G    G V+ AK +   M ++ ++ +VVTYT LI+G+C     +EA+ +   M
Sbjct: 263 TYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGM 322

Query: 225 MDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283
            ++  + P+   + V+++  C+ GK+D+A RLL+ M+++G++ +  + N+L++G+C  G 
Sbjct: 323 QEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGE 382

Query: 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           ++ A+ +   M       D +SY  L++GYC+      A +L  +ML +GI PTV+TYNT
Sbjct: 383 IHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNT 442



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 167/357 (46%), Gaps = 41/357 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ +L     +    D  + L   +  +GL  +L+  N LIN +CK G +     V
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + R++     PD+ ++ +L+ G C E    EA  L  K+   G +P V TY TL+ GLCR
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL--------------------- 173
            G    AL ++  M     + GV   PD + YST+ DGL                     
Sbjct: 450 VGAFDDALQIWHLMM----KXGVA--PDEVGYSTLLDGLFKMENFEGASTLWKDILARGF 503

Query: 174 --------------CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
                         CK G + +A+E+F KMKD   +PD +TY +LI G+C A++  +A  
Sbjct: 504 TKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFK 563

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +   M  + + P++  +N +++ L K+ ++ E + LL  M   G+ P+   Y  L+DG+C
Sbjct: 564 VKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWC 623

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336
             G +++A   +  M  NG   ++     +++G  +   I+ A  L  +M+  G  P
Sbjct: 624 KEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFP 680



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 148/330 (44%), Gaps = 38/330 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +  +N L   L K++       L   +   GL P++ TY  LI+ +CK G +   F  
Sbjct: 575 PSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 634

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG----------------- 117
              +  +  + + +  ++++ GL    RI EA  L  K+   G                 
Sbjct: 635 YFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAA 694

Query: 118 -----------CK----PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162
                      CK    P+   Y   I GLC+TG    A   F  ++      G V  PD
Sbjct: 695 IQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLK----GFV--PD 748

Query: 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
             TY T+  G    G VD+A  L  +M    + P++VTY +LI G C + + + A+ LF 
Sbjct: 749 NFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFH 808

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           ++  +G+ PNVVT+N +++  CK G MD A +L + MI+ G+ P    Y+ L++G C  G
Sbjct: 809 KLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHG 868

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILING 312
            + R+ +L   M   G    +  Y  L+ G
Sbjct: 869 DIERSMKLLNQMIKAGVDSKLIEYCTLVQG 898



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 133/252 (52%), Gaps = 17/252 (6%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMG-RVSPGFVVLGRILRSCFT---PDAVTFTSLI 94
           L +++   G FPD         CF K   R +    +   +  SC T   P+ + +   I
Sbjct: 669 LMQKMVDHGFFPDH-------ECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAI 721

Query: 95  KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            GLC   ++ +A   F+ L   G  PD FTY TLI+G    G+   A  L +EM      
Sbjct: 722 AGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRR--- 778

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
            G+V  P+ +TY+ + +GLCK   VD+A+ LF K+  + + P+VVTY +LI G+C   + 
Sbjct: 779 -GLV--PNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           + A  L  +M+++G+ P+VVT++ ++N LCK+G ++ + +LL  MI+ GV      Y TL
Sbjct: 836 DAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTL 895

Query: 275 MDGFCLTGRVNR 286
           + G   T   N 
Sbjct: 896 VQGGFKTSNYNE 907


>gi|255661024|gb|ACU25681.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 376

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 171/340 (50%), Gaps = 8/340 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           F ++D M R       V SFNI+   L  N   D  +S+++ +   G   D  TY IL++
Sbjct: 45  FELWDLMGR--EGSRTVASFNIIMRGLFDNGKVDEAVSIWELMKESGFVEDSTTYGILVH 102

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            FCK G  +    VL    +     DA  ++++I GLC E+++ +A ++   +   GCKP
Sbjct: 103 GFCKNGHNNKSLHVLEIAEQKGGVLDAFAYSAMINGLCKEAKLDKAISVLNSMTNNGCKP 162

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +   Y +LINGL        A+  F+EM N +      C P  +TY+ + +GLCK     
Sbjct: 163 NAHVYNSLINGLVGASKYEDAICAFQEMGNMD------CSPTIVTYNXLINGLCKGERYA 216

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A +L  +M ++  NP V+TY+SL +G C       A  L+ +++ +G +P+V   N+++
Sbjct: 217 EAYDLVKQMLEKGFNPSVITYSSLFKGLCQGRKVEMALQLWKKVISKGFKPDVQMHNILI 276

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + LC  GK++ A  L   M +    P+    NTLM+GF   G V     ++  +  N   
Sbjct: 277 HGLCNVGKIELALALYFGMNRWKCSPNLVTLNTLMEGFYKDGDVRSGLVIWARILRNELK 336

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            D+ SY I + G C    I GA+    + L K I PTV+T
Sbjct: 337 PDIISYNITLKGLCSCNRISGAVLFLHDALGKNIFPTVIT 376



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 7/305 (2%)

Query: 39  LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98
           ++K +    + PD   YN ++N F +  R+   F +   + R   +    +F  +++GL 
Sbjct: 12  VYKEMVERKVSPDAVVYNTMLNGFFRSQRIKDCFELWDLMGREG-SRTVASFNIIMRGLF 70

Query: 99  AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
              ++ EA +++  ++  G   D  TY  L++G C+ GH   +L++ E +A   G  GV+
Sbjct: 71  DNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLHVLE-IAEQKG--GVL 127

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              DA  YS + +GLCKE  +DKA  +   M +    P+   Y SLI G   A+ + +A 
Sbjct: 128 ---DAFAYSAMINGLCKEAKLDKAISVLNSMTNNGCKPNAHVYNSLINGLVGASKYEDAI 184

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
           C F EM +    P +VT+N ++N LCK  +  EA  L++ M++ G  P    Y++L  G 
Sbjct: 185 CAFQEMGNMDCSPTIVTYNXLINGLCKGERYAEAYDLVKQMLEKGFNPSVITYSSLFKGL 244

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C   +V  A +L+  + S G   DV  + ILI+G C   +IE AL+LY  M      P +
Sbjct: 245 CQGRKVEMALQLWKKVISKGFKPDVQMHNILIHGLCNVGKIELALALYFGMNRWKCSPNL 304

Query: 339 VTYNT 343
           VT NT
Sbjct: 305 VTLNT 309



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 165/340 (48%), Gaps = 8/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           ++  M+    SP  V  +N +     +++       L+  +   G    + ++NI++   
Sbjct: 12  VYKEMVERKVSPDAVV-YNTMLNGFFRSQRIKDCFELWDLMGREG-SRTVASFNIIMRGL 69

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
              G+V     +   +  S F  D+ T+  L+ G C      ++  +       G   D 
Sbjct: 70  FDNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLHVLEIAEQKGGVLDA 129

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
           F Y+ +INGLC+      A+++   M N NG     CKP+A  Y+++ +GL      + A
Sbjct: 130 FAYSAMINGLCKEAKLDKAISVLNSMTN-NG-----CKPNAHVYNSLINGLVGASKYEDA 183

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
              F +M + + +P +VTY  LI G C    + EA  L  +M+++G  P+V+T++ +   
Sbjct: 184 ICAFQEMGNMDCSPTIVTYNXLINGLCKGERYAEAYDLVKQMLEKGFNPSVITYSSLFKG 243

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           LC+  K++ A +L + +I  G +PD  ++N L+ G C  G++  A  L+  M    C  +
Sbjct: 244 LCQGRKVEMALQLWKKVISKGFKPDVQMHNILIHGLCNVGKIELALALYFGMNRWKCSPN 303

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + +   L+ G+ K+ ++   L +++ +L   ++P +++YN
Sbjct: 304 LVTLNTLMEGFYKDGDVRSGLVIWARILRNELKPDIISYN 343



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 94/170 (55%), Gaps = 1/170 (0%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G +  A+ ++ +M +  ++PD V Y +++ GF  +    +   L+  M  +G +  V
Sbjct: 1   CELGDISGAERVYKEMVERKVSPDAVVYNTMLNGFFRSQRIKDCFELWDLMGREGSRT-V 59

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            +FN+IM  L  NGK+DEA  + ELM + G   D++ Y  L+ GFC  G  N++  +   
Sbjct: 60  ASFNIIMRGLFDNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLHVLEI 119

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            E  G + D F+Y  +ING CK  +++ A+S+ + M + G +P    YN+
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEAKLDKAISVLNSMTNNGCKPNAHVYNS 169


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/324 (32%), Positives = 163/324 (50%), Gaps = 9/324 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++ +L   L K             + + GL P++  Y  +I+ +CK+G+V     V    
Sbjct: 429 AYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLT 488

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
                 P+A T++SLI GL  + ++ +A AL TK++  G  P V TYTTLI G C+    
Sbjct: 489 EHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEF 548

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LFE M   NG       PD   Y+ +TD LCK G  ++A    +K   + +    
Sbjct: 549 DNAFRLFE-MMEQNG-----LTPDEQAYNVLTDALCKSGRAEEAYSFLVK---KGVVLTK 599

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
           VTYTSL+ GF  A +   A  L  +M+++G + +  T++V++  LCK  K++EA  +L+ 
Sbjct: 600 VTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQ 659

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M   GV+ +   Y  ++      G+ + AK +F  M S+G      +Y + I+ YCK   
Sbjct: 660 MTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGR 719

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
           IE A  L  EM   G+ P VVTYN
Sbjct: 720 IEEAGHLIGEMERNGVAPDVVTYN 743



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 53  YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTK 112
           Y+Y ILI   C+   V    V+L  +L+   +P+  T+T LI+GLC E RI +A  L  +
Sbjct: 254 YSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDE 313

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           +   G  P V+TY  +I+G C++G    AL + + +  GNG     C PD  TY+++  G
Sbjct: 314 MPRRGVVPSVWTYNAMIDGYCKSGRLKDALGI-KTLMEGNG-----CNPDDWTYNSLIHG 367

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           LC  G  D+A+EL         +P V+T+T++I G+C A   ++A  +   M+    + +
Sbjct: 368 LCG-GKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLD 426

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           +  + V+++ L K  ++ EA   L  +   G+ P+  +Y +++D +C  G+V  A E+F 
Sbjct: 427 LQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFK 486

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             E  GC  + ++Y  LI G  +++++  A++L ++M   GI P V+TY T
Sbjct: 487 LTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTT 537



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 152/324 (46%), Gaps = 7/324 (2%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           S+ IL   L + +     L L   +   G  P+L+TY +LI   CK GR+    V+L  +
Sbjct: 255 SYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEM 314

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
            R    P   T+ ++I G C   R+ +A  + T +   GC PD +TY +LI+GLC  G  
Sbjct: 315 PRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLC-GGKP 373

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A    EE+ NG    G    P  IT++ I +G CK   +D A  +   M       D+
Sbjct: 374 DEA----EELLNGAIARGF--SPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDL 427

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
             Y  LI      +   EAK    E+   G+ PNVV +  I++  CK GK+  A  + +L
Sbjct: 428 QAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKL 487

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
               G RP+A  Y++L+ G     ++++A  L   M+ +G    V +Y  LI G CK  E
Sbjct: 488 TEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHE 547

Query: 319 IEGALSLYSEMLSKGIRPTVVTYN 342
            + A  L+  M   G+ P    YN
Sbjct: 548 FDNAFRLFEMMEQNGLTPDEQAYN 571



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 22/340 (6%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           ++++L   L K K  +  LS+  ++   G+  ++  Y I+I+   K G+      +   +
Sbjct: 636 TYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEM 695

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           + S   P A+T+T  I   C   RI EA  L  ++   G  PDV TY   ING    G+ 
Sbjct: 696 ISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYM 755

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTI----------------TDGLCKEGFVDKA 182
             A +  + M + +      C+P+  TY  +                T G+     +D  
Sbjct: 756 DCAFSTLKRMIDAS------CEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTV 809

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            +L  +M    +NP  VTY+S+I GFC A    EA  L   M+ + + PN   + +++  
Sbjct: 810 WQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKC 869

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            C     ++A+  +  MI+ G +P    Y+ L+ G C  G  ++AK LF  +       +
Sbjct: 870 CCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNHN 929

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             ++ IL +G  K   ++    L S M ++  R    TY+
Sbjct: 930 EVAWKILNDGLLKAGHVDICSQLLSAMENRHCRIDSETYS 969



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168
           L+++L   G  PD  TY T+I   C+ G   +A   F  +     E       D  T + 
Sbjct: 170 LYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEM------DTYTCNA 223

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           +  G C+ G + KA  L + M       +  +YT LI+G C      EA  L + M+  G
Sbjct: 224 LLLGYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDG 283

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
             PN+ T+ +++  LCK G++ +A  LL+ M + GV P    YN ++DG+C +GR+  A 
Sbjct: 284 CSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDAL 343

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            +   ME NGC  D ++Y  LI+G C  K  E A  L +  +++G  PTV+T+
Sbjct: 344 GIKTLMEGNGCNPDDWTYNSLIHGLCGGKPDE-AEELLNGAIARGFSPTVITF 395



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 145/308 (47%), Gaps = 16/308 (5%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + ++ I+   + K   +D   S+F  + S G  P   TY + I+ +CK+GR+     ++G
Sbjct: 669 IVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIG 728

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAA-ALFTKLRAFGCKPDVFTYTTLINGLCR- 134
            + R+   PD VT+   I G C     M+ A +   ++    C+P+ +TY  L+    + 
Sbjct: 729 EMERNGVAPDVVTYNVFING-CGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKM 787

Query: 135 ---TGHTI--------VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
                H +        + L+   ++     + G+   P A+TYS+I  G CK   +++A 
Sbjct: 788 SLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGL--NPTAVTYSSIIAGFCKATRLEEAC 845

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
            L   M  ++I+P+   YT LI+  C    + +A      M++ G QP++ +++ ++  L
Sbjct: 846 VLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGL 905

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  G  D+A  L   ++++    +   +  L DG    G V+   +L  +ME+  C  D 
Sbjct: 906 CDEGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAMENRHCRIDS 965

Query: 304 FSYGILIN 311
            +Y ++ N
Sbjct: 966 ETYSMVTN 973



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 96/183 (52%)

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
           PD +TY+T+    CKEG +  A   F  +++  +  D  T  +L+ G+C   D  +A  L
Sbjct: 181 PDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWL 240

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
            + M   G + N  ++ +++  LC+   + EA  LL +M+Q G  P+   Y  L+ G C 
Sbjct: 241 LMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCK 300

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            GR++ A+ L   M   G +  V++Y  +I+GYCK+  ++ AL + + M   G  P   T
Sbjct: 301 EGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWT 360

Query: 341 YNT 343
           YN+
Sbjct: 361 YNS 363



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 86/178 (48%)

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+     L +    +   +L+ ++  E + PD VTY ++I  +C       A   F  + 
Sbjct: 151 YNLALRSLLRFDMTEHMGKLYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLR 210

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285
           + G++ +  T N ++   C+ G + +A  LL +M  +G R +   Y  L+ G C T  V 
Sbjct: 211 ESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVR 270

Query: 286 RAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            A  L + M  +GC  ++ +Y +LI G CK   I  A  L  EM  +G+ P+V TYN 
Sbjct: 271 EALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNA 328



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 110/256 (42%), Gaps = 26/256 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV- 73
           P V ++N+         + D   S  KR+      P+ +TY +L+  F KM   +  +V 
Sbjct: 737 PDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMSLANAHYVD 796

Query: 74  ---------------VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118
                          +L R+++    P AVT++S+I G C  +R+ EA  L   +     
Sbjct: 797 TSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDI 856

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC--KPDAITYSTITDGLCKE 176
            P+   YT LI   C        + LFE+ A+      + C  +P   +Y  +  GLC E
Sbjct: 857 SPNEEIYTMLIKCCCD-------IKLFEKAASFVTNM-IECGFQPHLESYHYLITGLCDE 908

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
           G  DKAK LF  + + + N + V +  L  G   A   +    L   M ++  + +  T+
Sbjct: 909 GDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAMENRHCRIDSETY 968

Query: 237 NVIMNELCKNGKMDEA 252
           +++ N + +   M E+
Sbjct: 969 SMVTNNIHEASGMYES 984



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 8/173 (4%)

Query: 3   IFDYMLRM--HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           ++  + RM  H   P   +++ +     K    +    L   +    + P+   Y +LI 
Sbjct: 809 VWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIK 868

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
           C C +         +  ++   F P   ++  LI GLC E    +A ALF  L       
Sbjct: 869 CCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNH 928

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
           +   +  L +GL + GH  +   L   M N +      C+ D+ TYS +T+ +
Sbjct: 929 NEVAWKILNDGLLKAGHVDICSQLLSAMENRH------CRIDSETYSMVTNNI 975


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 169/336 (50%), Gaps = 9/336 (2%)

Query: 7   MLRMHPSPPPV-CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           M+R+   P    CSF I    L K +  +   SL  +L  +G+ P+++ YN LI+  CK 
Sbjct: 294 MIRLGFVPSEANCSFMI--DELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKN 351

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
            R      +   +      P+ VT+  LI  LC    I +A  LF K+R  G K  V+ Y
Sbjct: 352 ERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPY 411

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            +LING C+ G    A  L   M            P A +YS +  GLC+ G +  A EL
Sbjct: 412 NSLINGYCKQGSLDRARGLLSGMVKEG------LTPTAASYSPLIAGLCRNGDLSSAMEL 465

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             +M +  I  +  T+T+LI GFC     +EA  LF +M+D  V PN VTFNV++   C 
Sbjct: 466 HREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCL 525

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G + +A +L + M+++G++PD   Y +L+ G CLT  V++A E    +E++  + + FS
Sbjct: 526 VGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFS 585

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
              L+ G  +         L+ EM  +G++  +V++
Sbjct: 586 LTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSF 621



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 161/324 (49%), Gaps = 6/324 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +N+L   L KN      + +   + +IG+  D  TY  L+  FC+M  +     +   ++
Sbjct: 236 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMI 295

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           R  F P     + +I  L  +  + EA +L  KL   G  P+VF Y  LI+ LC+     
Sbjct: 296 RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFD 355

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A  LF+EMA G G      +P+ +TY+ +   LCK G ++ A  LF KM+D+ I   V 
Sbjct: 356 DADRLFKEMA-GRG-----LEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVY 409

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            Y SLI G+C     + A+ L   M+ +G+ P   +++ ++  LC+NG +  A  L   M
Sbjct: 410 PYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREM 469

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
            + G+  +   +  L++GFC   +++ A  LF  M  +  + +  ++ ++I GYC    I
Sbjct: 470 AERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNI 529

Query: 320 EGALSLYSEMLSKGIRPTVVTYNT 343
             A  LY +M+  G++P   TY +
Sbjct: 530 RKAFQLYDQMVEMGLKPDNYTYRS 553



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 161/351 (45%), Gaps = 30/351 (8%)

Query: 21  NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80
            ILF  L K + +     LF ++   G+  D Y Y   I  +C+   +     ++ R+  
Sbjct: 168 QILFS-LVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES 226

Query: 81  SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140
                 AV +  L+ GLC   R+ EA  +   +   G   D  TY TL+ G CR     +
Sbjct: 227 EGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEM 286

Query: 141 ALNLFEEM-------ANGN---------------GEFGVVCK-------PDAITYSTITD 171
           AL +  +M       +  N                 F + CK       P+   Y+ + D
Sbjct: 287 ALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALID 346

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231
            LCK    D A  LF +M    + P+ VTY  LI   C      +A CLF +M D+G++ 
Sbjct: 347 KLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKV 406

Query: 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
            V  +N ++N  CK G +D A  LL  M++ G+ P A+ Y+ L+ G C  G ++ A EL 
Sbjct: 407 TVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELH 466

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             M   G   + +++  LING+CK+K+++ A  L+ +M+   + P  VT+N
Sbjct: 467 REMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFN 517



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 169/364 (46%), Gaps = 42/364 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S++ L   L +N    + + L + +   G+  + YT+  LIN FCK  ++     +
Sbjct: 441 PTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARL 500

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC- 133
             +++ S   P+ VTF  +I+G C    I +A  L+ ++   G KPD +TY +LI+GLC 
Sbjct: 501 FDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCL 560

Query: 134 ----------------------------------RTGHTIVALNLFEEMANGNGEFGVVC 159
                                             R G      +L++EMA          
Sbjct: 561 TSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRG------V 614

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           K D ++++ I     K+   +K+  LF +MK++ + PD + YT +I       +  +A  
Sbjct: 615 KLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
            + +M+  G  PN VT  V++N LCK+G +  A  L + M+   V P+   YN  +D F 
Sbjct: 675 CWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFA 734

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339
             G + +AK+L  +M   G +  + S+ ILI G CK  +I+ A+ L  ++   G  P  +
Sbjct: 735 TEGDMEKAKDLHSAM-LQGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCI 793

Query: 340 TYNT 343
           +Y+T
Sbjct: 794 SYST 797



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 160/328 (48%), Gaps = 8/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N L   L KN+ +D    LFK +   GL P+  TY ILI+  CK G +     +
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++           + SLI G C +  +  A  L + +   G  P   +Y+ LI GLCR
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ L  EMA    E G+    +  T++ + +G CK+  +D+A  LF KM D N+
Sbjct: 456 NGDLSSAMELHREMA----ERGIAW--NNYTFTALINGFCKDKKMDEAARLFDKMIDSNV 509

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ VT+  +I G+C   +  +A  L+ +M++ G++P+  T+  +++ LC    + +A+ 
Sbjct: 510 IPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANE 569

Query: 255 LL-ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            + +L     V  + S+   L+ G    GR      L+  M   G   D+ S+ I++   
Sbjct: 570 FVADLENSYAVLNNFSL-TALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAA 628

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            K  + E +  L+ EM  +G++P  + Y
Sbjct: 629 LKQHDKEKSCVLFREMKEQGVKPDDIFY 656



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 159/353 (45%), Gaps = 30/353 (8%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +F  L     K+K  D    LF ++    + P+  T+N++I  +C +G +   F +  ++
Sbjct: 480 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 539

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           +     PD  T+ SLI GLC  S + +A      L       + F+ T L+ GL R G  
Sbjct: 540 VEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRF 599

Query: 139 IVALNLFEEMANGNGEFGVVC-----------------------------KPDAITYSTI 169
               +L++EMA    +  +V                              KPD I Y+ +
Sbjct: 600 TETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM 659

Query: 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
            D L KE  + +A   + +M  +  +P+ VT+T LI   C +     A+ L  EM+   V
Sbjct: 660 IDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNV 719

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
            PN  T+N  ++     G M++A  L   M+Q G       +N L+ G C  G++  A +
Sbjct: 720 LPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAID 778

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           L   +  +G   D  SY  +I+  CK  +I  A  L++EML KG++P VV YN
Sbjct: 779 LMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYN 831



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 172/378 (45%), Gaps = 47/378 (12%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFG--CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
           +FD M+  +  P  V +FN++    CL  N        L+ ++  +GL PD YTY  LI+
Sbjct: 500 LFDKMIDSNVIPNEV-TFNVMIEGYCLVGNIR--KAFQLYDQMVEMGLKPDNYTYRSLIS 556

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME--------------- 105
             C    VS     +  +  S    +  + T+L+ GL  E R  E               
Sbjct: 557 GLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKL 616

Query: 106 --------------------AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
                               +  LF +++  G KPD   YT +I+ L +  + I ALN +
Sbjct: 617 DLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCW 676

Query: 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205
           ++M            P+ +T++ + + LCK G++  A+ L  +M   N+ P+  TY   +
Sbjct: 677 DQMVIDG------YSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFL 730

Query: 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
             F    D  +AK L   M+ QG   ++V+FN+++  LCK GK+ EA  L+  + + G  
Sbjct: 731 DYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFS 789

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD   Y+T++   C  G +N+A EL+  M   G   DV +Y I I     + E + AL +
Sbjct: 790 PDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGI 849

Query: 326 YSEMLSKGIRPTVVTYNT 343
           Y+ M+  G++P   TY  
Sbjct: 850 YTNMIRSGVQPNWDTYRA 867



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 132/304 (43%), Gaps = 41/304 (13%)

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           VLG  L S  T +  T + ++  L    +   A  LF K+   G   D + YT  I   C
Sbjct: 150 VLGLSLSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYC 209

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            + +   A  L   M +         K  A+ Y+ +  GLCK   V +A E+   M +  
Sbjct: 210 ESRNLDGARGLVVRMESEG------VKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIG 263

Query: 194 INPDVVTYTSLIRGFCYANDW-----------------NEAKCLFI-------------- 222
           +  D VTY +L+ GFC   +                  +EA C F+              
Sbjct: 264 VTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAF 323

Query: 223 ----EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
               ++ D G+ PNV  +N ++++LCKN + D+A RL + M   G+ P+   Y  L+   
Sbjct: 324 SLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHAL 383

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G +  A  LF  M   G    V+ Y  LINGYCK   ++ A  L S M+ +G+ PT 
Sbjct: 384 CKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTA 443

Query: 339 VTYN 342
            +Y+
Sbjct: 444 ASYS 447



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 144/291 (49%), Gaps = 8/291 (2%)

Query: 22  ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81
           +L+G   + +  +T   L+  +   G+  DL ++ I++    K        V+   +   
Sbjct: 589 LLYGLFREGRFTETY-HLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQ 647

Query: 82  CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141
              PD + +T +I  L  E  +++A   + ++   G  P+  T+T LIN LC++G+   A
Sbjct: 648 GVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSA 707

Query: 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201
             L +EM  GN        P+  TY+   D    EG ++KAK+L   M   ++   +V++
Sbjct: 708 ELLCKEMLAGN------VLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL-ASIVSF 760

Query: 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261
             LI+G C A    EA  L  ++ + G  P+ ++++ I++ELCK G +++A  L   M+ 
Sbjct: 761 NILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLY 820

Query: 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
            G++PD   YN  +    + G  ++A  ++ +M  +G   +  +Y  L++G
Sbjct: 821 KGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 125/264 (47%), Gaps = 7/264 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           + SF I+     K    +    LF+ +   G+ PD   Y  +I+   K   +        
Sbjct: 618 LVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWD 677

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           +++   ++P+ VT T LI  LC    +  A  L  ++ A    P+ FTY   ++     G
Sbjct: 678 QMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEG 737

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A +L   M  G+           ++++ +  GLCK G + +A +L  K+ +   +P
Sbjct: 738 DMEKAKDLHSAMLQGH-------LASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSP 790

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D ++Y+++I   C   D N+A  L+ EM+ +G++P+VV +N+ +     +G+ D+A  + 
Sbjct: 791 DCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIY 850

Query: 257 ELMIQIGVRPDASVYNTLMDGFCL 280
             MI+ GV+P+   Y  L+ G  L
Sbjct: 851 TNMIRSGVQPNWDTYRALLSGISL 874



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 111/240 (46%), Gaps = 7/240 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           C+    ++     P    +  +   L+K ++    L+ + ++   G  P+  T+ +LIN 
Sbjct: 638 CVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINN 697

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            CK G +    ++   +L     P+  T+   +     E  + +A  L + +   G    
Sbjct: 698 LCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLAS 756

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           + ++  LI GLC+ G    A++L  ++            PD I+YSTI   LCK G ++K
Sbjct: 757 IVSFNILIKGLCKAGKIQEAIDLMRKITESG------FSPDCISYSTIIHELCKMGDINK 810

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A EL+ +M  + + PDVV Y   IR      + ++A  ++  M+  GVQPN  T+  +++
Sbjct: 811 AFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLS 870



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%)

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           +  G+  N  T + I+  L K  +   A  L + M+Q GV  D  VY   +  +C +  +
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + A+ L V MES G       Y +L+ G CKN  ++ A+ + + M++ G+    VTY T
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRT 273


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 167/340 (49%), Gaps = 9/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R       +C +N L     + K  D V  + K + + G+ P + TY IL++  
Sbjct: 165 LLDEMPRHGVKVNALC-YNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGL 223

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
                ++    V   +     + D   ++S+I   C    +  A+ +F +    G +P+ 
Sbjct: 224 SAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNE 283

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            TY  LING C+ G    A  L  +M   G G        + I ++T+ DG C++  VDK
Sbjct: 284 HTYGALINGFCKIGQMEAAEMLVTDMQVRGVG-------INQIVFNTMIDGYCRKNMVDK 336

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A E+ + M+   I  DV TY +L  G   AN  +EAK L   M+++GV+PN V++  +++
Sbjct: 337 ALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLIS 396

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             C  G M EA RL   M   G  P    YN +MDG+   G +  A+     ME  G + 
Sbjct: 397 IHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVP 456

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           D++SY  L++G+C N +++ AL L+ EM  +G +P +V Y
Sbjct: 457 DIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAY 496



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 163/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL   L+  +    V ++F+ + S  L  D+Y Y+ +IN +C+ G V     V
Sbjct: 211 PTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEV 270

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               + +   P+  T+ +LI G C   ++  A  L T ++  G   +   + T+I+G CR
Sbjct: 271 FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCR 330

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL +   M     E       D  TY+T+  GL +   +D+AK L   M ++ +
Sbjct: 331 KNMVDKALEIKMIMEKMGIEL------DVYTYNTLACGLRRANRMDEAKNLLRIMIEKGV 384

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V+YT+LI   C   D  EA+ LF EM   G +P++VT+NV+M+   K G + EA R
Sbjct: 385 RPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAER 444

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
             + M + G+ PD   Y  L+ G C+ G+V+ A  LF  M+  G   ++ +Y  LI+G  
Sbjct: 445 FKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLA 504

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K    E A  LY  ML  G+ P    Y+ 
Sbjct: 505 KEGRSEEAFQLYDNMLGDGLTPDDALYSA 533



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 11/281 (3%)

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTS---LIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           G +     +L +   SC  PD+VT  S   ++ G C   R+  A  L  ++   G K + 
Sbjct: 121 GHLDTAADLLKQAATSC--PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNA 178

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y +L++   R         + + M N   E      P   TY+ + DGL     + K 
Sbjct: 179 LCYNSLLDAYTREKDDDRVAEMLKVMENEGIE------PTVGTYTILVDGLSAARDITKV 232

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F +MK +N++ DV  Y+S+I  +C A +   A  +F E +  G++PN  T+  ++N 
Sbjct: 233 EAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALING 292

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G+M+ A  L+  M   GV  +  V+NT++DG+C    V++A E+ + ME  G   D
Sbjct: 293 FCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELD 352

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V++Y  L  G  +   ++ A +L   M+ KG+RP  V+Y T
Sbjct: 353 VYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTT 393



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 6/235 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN +     +    D  L +   +  +G+  D+YTYN L     +  R+     +L  ++
Sbjct: 321 FNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMI 380

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ V++T+LI   C E  ++EA  LF ++   G +P + TY  +++G  + G   
Sbjct: 381 EKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIR 440

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A    +EM     + G+V  PD  +Y+ +  G C  G VD A  LF +MK     P++V
Sbjct: 441 EAERFKKEME----KKGLV--PDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLV 494

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            YT+LI G        EA  L+  M+  G+ P+   ++ ++  L  + K +   R
Sbjct: 495 AYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQNVKPR 549



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 54/120 (45%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           + P + ++N++     K           K +   GL PD+Y+Y  L++  C  G+V    
Sbjct: 419 AEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVAL 478

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   + +    P+ V +T+LI GL  E R  EA  L+  +   G  PD   Y+ L+  L
Sbjct: 479 RLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSL 538



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 38/88 (43%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+  L      N   D  L LF+ +   G  P+L  Y  LI+   K GR    F +
Sbjct: 456 PDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQL 515

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESR 102
              +L    TPD   +++L+  L  + +
Sbjct: 516 YDNMLGDGLTPDDALYSALVGSLHTDKK 543


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 172/340 (50%), Gaps = 16/340 (4%)

Query: 8   LRMHPSPPPVCSFNILFGCLAK-NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           LR+ PSP  +      +  + K ++   T LS+ +     GL  DL+++N L++  CK  
Sbjct: 130 LRLGPSPKTLAILAERYASIGKPHRAVRTFLSMHEH----GLHQDLHSFNTLLDILCKSN 185

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
           RV     +L R L+S F PD V++  L  G C + R   A  +  ++   G +P + TY 
Sbjct: 186 RVETAHDLL-RTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYN 244

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           T++ G  R+     A   + EM          C+ D ++Y+T+  G  + G V KAK +F
Sbjct: 245 TMLKGYFRSNQIKEAWEFYLEMKKRK------CEIDVVSYTTVIHGFGEAGEVKKAKRVF 298

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-QPNVVTFNVIMNELCK 245
            +M  E + P+V TY +LI+ FC  +    A  +F EM+ +GV  PNVVTFNV++  LC 
Sbjct: 299 DEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCH 358

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G M+ A   +E M + G+R     YN ++  FC  G + +  E+F  M    C+ ++ +
Sbjct: 359 VGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDT 418

Query: 306 YGILINGYCKNKEIEG---ALSLYSEMLSKGIRPTVVTYN 342
           Y +LI+     K+ E    A  L  EM+ +G  P   T+N
Sbjct: 419 YNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFN 458



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 142/312 (45%), Gaps = 46/312 (14%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           SFN L   L K+   +T   L + L S    PD  +YNIL N +C   R      VL  +
Sbjct: 173 SFNTLLDILCKSNRVETAHDLLRTLKS-RFRPDTVSYNILANGYCLKKRTPMALRVLKEM 231

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           ++    P  VT+ +++KG    ++I EA   + +++   C+ DV +YTT+I+G    G  
Sbjct: 232 VQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEV 291

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI-NPD 197
             A  +F+EM       GV   P+  TY+ +    CK+  V  A  +F +M  E + +P+
Sbjct: 292 KKAKRVFDEMVKE----GVA--PNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPN 345

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE------ 251
           VVT+  +IRG C+  D   A      M + G++ +V T+NV++   C  G++++      
Sbjct: 346 VVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFG 405

Query: 252 --------------------------------ASRLLELMIQIGVRPDASVYNTLMDGFC 279
                                           A +LL  M++ G  P    +N +++G  
Sbjct: 406 KMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLV 465

Query: 280 LTGRVNRAKELF 291
           +TG  + AK++ 
Sbjct: 466 ITGNQDFAKDIL 477



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 140/290 (48%), Gaps = 8/290 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           +++  ++   +M   +  + ++GR+      P   T   L +   +  +   A   F  +
Sbjct: 103 SFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTFLSM 162

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              G   D+ ++ TL++ LC++     A +L   + +         +PD ++Y+ + +G 
Sbjct: 163 HEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSR-------FRPDTVSYNILANGY 215

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C +     A  +  +M    I P +VTY ++++G+  +N   EA   ++EM  +  + +V
Sbjct: 216 CLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDV 275

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           V++  +++   + G++ +A R+ + M++ GV P+ + YN L+  FC    V  A  +F  
Sbjct: 276 VSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEE 335

Query: 294 MESNG-CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M   G C  +V ++ ++I G C   ++E AL     M   G+R +V TYN
Sbjct: 336 MVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYN 385



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYA-------NDWNEAKCLFIEMMDQGVQPNVVTFN 237
           LF K  D ++     +YT     F +A        D+N A  L   M    + P+  T  
Sbjct: 85  LFFKHLDRHLP----SYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLA 140

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           ++       GK   A R    M + G+  D   +NTL+D  C + RV  A +L  +++S 
Sbjct: 141 ILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSR 200

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               D  SY IL NGYC  K    AL +  EM+ +GI PT+VTYNT
Sbjct: 201 -FRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNT 245



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 36/199 (18%)

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           + A  L  +M+   + P   T   L   +      + A   F+ M + G+  ++ +FN +
Sbjct: 118 NSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTL 177

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR---------------- 283
           ++ LCK+ +++ A  LL   ++   RPD   YN L +G+CL  R                
Sbjct: 178 LDILCKSNRVETAHDLLR-TLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGI 236

Query: 284 -------------------VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
                              +  A E ++ M+   C  DV SY  +I+G+ +  E++ A  
Sbjct: 237 EPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKR 296

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           ++ EM+ +G+ P V TYN 
Sbjct: 297 VFDEMVKEGVAPNVATYNA 315



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 2   CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
            +F+ M+R     P V +FN++   L      +  L   +R+   GL   + TYN++I  
Sbjct: 331 AVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRY 390

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR---IMEAAALFTKLRAFGC 118
           FC  G +  G  V G++      P+  T+  LI  +    +   ++ A  L  ++   G 
Sbjct: 391 FCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGF 450

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFE 146
            P  FT+  ++NGL  TG+   A ++  
Sbjct: 451 LPRKFTFNRVLNGLVITGNQDFAKDILR 478


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 163/328 (49%), Gaps = 9/328 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L    +     +    +   + S G  PDL TYN +++  C  GR S    V
Sbjct: 259 PTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASE---V 315

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      PD+V++  LI+G      +  A A   ++   G  P  +TY TLI+GL  
Sbjct: 316 LREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFM 375

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 A  L  E+     E G+V   D++TY+ + +G C+ G   KA  L  +M  + I
Sbjct: 376 ENKIEAAEILIREIR----EKGIVL--DSVTYNIVINGYCQHGDAKKAFALHDEMMTDGI 429

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P   TYTSLI   C  N   EA  LF +++ +G++P++V  N +M+  C  G MD A  
Sbjct: 430 KPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFS 489

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL+ M ++ + PD   YN LM G C  G+   A+EL   M+  G   D  SY  LI+GY 
Sbjct: 490 LLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYS 549

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K  + + A  +  EMLS G  PT++TYN
Sbjct: 550 KKGDTKHAFIVRDEMLSLGFNPTLLTYN 577



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 9/327 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +FNI+   L K             + S G+ P + TYN L+  +   GR+    +++ 
Sbjct: 226 VYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIIS 285

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +    F PD  T+  ++  +C E R   A+ +  +++  G  PD  +Y  LI G    G
Sbjct: 286 EMKSKGFQPDLQTYNPILSWMCNEGR---ASEVLREMKGIGLVPDSVSYNILIRGCSNNG 342

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
               A    +EM       G+V  P   TY+T+  GL  E  ++ A+ L  +++++ I  
Sbjct: 343 DLETAFAYRDEMVKQ----GMV--PTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVL 396

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           D VTY  +I G+C   D  +A  L  EMM  G++P   T+  ++  LC+  K  EA  L 
Sbjct: 397 DSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELF 456

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
           E ++  G++PD  + NTLMDG C TG ++RA  L   M+      D  +Y  L+ G C  
Sbjct: 457 EKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGE 516

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + E A  L  EM  +GI+P  ++YNT
Sbjct: 517 GKFEEARELMGEMKRRGIKPDHISYNT 543



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 153/322 (47%), Gaps = 9/322 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N +   +        VL   + +  IGL PD  +YNILI      G +   F  
Sbjct: 294 PDLQTYNPILSWMCNEGRASEVL---REMKGIGLVPDSVSYNILIRGCSNNGDLETAFAY 350

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++    P   T+ +LI GL  E++I  A  L  ++R  G   D  TY  +ING C+
Sbjct: 351 RDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQ 410

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L +EM           KP   TY+++   LC+     +A ELF K+  + +
Sbjct: 411 HGDAKKAFALHDEMMTDG------IKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGM 464

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD+V   +L+ G C   + + A  L  EM    + P+ VT+N +M  LC  GK +EA  
Sbjct: 465 KPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARE 524

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L+  M + G++PD   YNTL+ G+   G    A  +   M S G    + +Y  L+ G  
Sbjct: 525 LMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLS 584

Query: 315 KNKEIEGALSLYSEMLSKGIRP 336
           KN++ E A  L  EM S+GI P
Sbjct: 585 KNQDGELAEELLREMKSEGIVP 606



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 147/302 (48%), Gaps = 6/302 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+NIL    + N   +T  +    +   G+ P  YTYN LI+      ++    ++
Sbjct: 326 PDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEIL 385

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  I       D+VT+  +I G C      +A AL  ++   G KP  FTYT+LI  LCR
Sbjct: 386 IREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCR 445

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
              T  A  LFE++  G G      KPD +  +T+ DG C  G +D+A  L  +M   NI
Sbjct: 446 RNKTREADELFEKVV-GKG-----MKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNI 499

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD VTY  L+RG C    + EA+ L  EM  +G++P+ +++N +++   K G    A  
Sbjct: 500 DPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFI 559

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + + M+ +G  P    YN L+ G         A+EL   M+S G + +  S+  +I    
Sbjct: 560 VRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMS 619

Query: 315 KN 316
           K+
Sbjct: 620 KS 621



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 38/292 (13%)

Query: 84  TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
           T   + F  +++  C    + EA   F  ++  G  P   T   +++ L R      A  
Sbjct: 153 TKSTILFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWV 212

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
            + +M      + +  K +  T++ + + LCKEG + KAK     M+   I P +VTY +
Sbjct: 213 FYADM------YRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNT 266

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL------- 256
           L++G+        A+ +  EM  +G QP++ T+N I++ +C  G+  E  R +       
Sbjct: 267 LVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASEVLREMKGIGLVP 326

Query: 257 -------------------------ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
                                    + M++ G+ P    YNTL+ G  +  ++  A+ L 
Sbjct: 327 DSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILI 386

Query: 292 VSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +   G + D  +Y I+INGYC++ + + A +L+ EM++ GI+PT  TY +
Sbjct: 387 REIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTS 438



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 215 NEAKCLFIEMM---DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271
           N  + LF E++   D+    + + F+ ++   C+   +DEA     LM + G  P     
Sbjct: 135 NSVRDLFDELVLAHDRLQTKSTILFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETC 194

Query: 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331
           N ++       R+  A   +  M       +V+++ I+IN  CK  +++ A      M S
Sbjct: 195 NHILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMES 254

Query: 332 KGIRPTVVTYNT 343
            GI+PT+VTYNT
Sbjct: 255 FGIKPTIVTYNT 266


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 181/357 (50%), Gaps = 29/357 (8%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +R +     + S+NI    L ++  +    ++ K++   G+ P +Y+YNIL++  CK+G 
Sbjct: 317 IRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGM 376

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +S    ++G + R+   PDAVT+  L+ G C+  ++  A +L  ++    C P+ +T   
Sbjct: 377 LSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNI 436

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           L++ L + G    A  L  +M N  G +G+    D +T + I DGLC  G +DKA E+  
Sbjct: 437 LLHSLWKMGRISEAEELLRKM-NEKG-YGL----DTVTCNIIVDGLCGSGELDKAIEIVK 490

Query: 188 KMK-----------------------DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224
            M+                       + N  PD++TY++L+ G C A  + EAK LF EM
Sbjct: 491 GMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEM 550

Query: 225 MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284
           M + +QP+ V +N+ ++  CK GK+  A R+L+ M + G       YN+L+ G  +  ++
Sbjct: 551 MGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQI 610

Query: 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
                L   M+  G   ++ +Y   I   C+ +++E A +L  EM+ K I P V ++
Sbjct: 611 FEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSF 667



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 169/328 (51%), Gaps = 2/328 (0%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +FN+L   L  +   D    LF  +   G  P+ +T+ IL+  +CK G    G  +
Sbjct: 145 PQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLEL 204

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  +      P+ V + +++   C E R  ++  +  K+R  G  PD+ T+ + I+ LC+
Sbjct: 205 LNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCK 264

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G  + A  +F +M     E+  + +P++ITY+ +  G CK G ++ AK LF  +++ + 
Sbjct: 265 EGKVLDASRIFSDMELD--EYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
              + +Y   ++G      + EA+ +  +M D+G+ P++ ++N++M+ LCK G + +A  
Sbjct: 323 LASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKT 382

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           ++ LM + GV PDA  Y  L+ G+C  G+V+ AK L   M  N C+ + ++  IL++   
Sbjct: 383 IVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLW 442

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           K   I  A  L  +M  KG     VT N
Sbjct: 443 KMGRISEAEELLRKMNEKGYGLDTVTCN 470



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 163/338 (48%), Gaps = 10/338 (2%)

Query: 9   RMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV 68
           R   + P V  +N+L     K +  + V  L+K +   G+ P  YT+N+LI   C    V
Sbjct: 104 RFPENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCV 163

Query: 69  SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128
                +   +      P+  TF  L++G C      +   L   + +FG  P+   Y T+
Sbjct: 164 DAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTI 223

Query: 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188
           ++  CR G    +  + E+M     E G+V  PD +T+++    LCKEG V  A  +F  
Sbjct: 224 VSSFCREGRNDDSEKMVEKMR----EEGLV--PDIVTFNSRISALCKEGKVLDASRIFSD 277

Query: 189 MK-DENI---NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           M+ DE +    P+ +TY  +++GFC      +AK LF  + +     ++ ++N+ +  L 
Sbjct: 278 MELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLV 337

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           ++GK  EA  +L+ M   G+ P    YN LMDG C  G ++ AK +   M+ NG   D  
Sbjct: 338 RHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAV 397

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +YG L++GYC   +++ A SL  EM+     P   T N
Sbjct: 398 TYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCN 435



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 156/379 (41%), Gaps = 69/379 (18%)

Query: 17  VCSFNILFGCLAKN----KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF 72
           VC   + +GCL          D   SL + +      P+ YT NIL++   KMGR+S   
Sbjct: 392 VCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAE 451

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG--------------- 117
            +L ++    +  D VT   ++ GLC    + +A  +   +R  G               
Sbjct: 452 ELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLV 511

Query: 118 --------CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169
                   C PD+ TY+TL+NGLC+ G    A NLF EM       G   +PD++ Y+  
Sbjct: 512 DDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEM------MGEKLQPDSVAYNIF 565

Query: 170 TDGLCKEGFVDKA-----------------------------------KELFLKMKDENI 194
               CK+G +  A                                     L  +MK++ I
Sbjct: 566 IHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGI 625

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +P++ TY + I+  C      +A  L  EMM + + PNV +F  ++   CK    D A  
Sbjct: 626 SPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQE 685

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           + E  + I  + +  +Y+ + +     G++ +A EL  ++   G     F Y  L+   C
Sbjct: 686 VFETAVSICGQKEG-LYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLC 744

Query: 315 KNKEIEGALSLYSEMLSKG 333
           K  E+E A  +  +M+ +G
Sbjct: 745 KKDELEVASGILHKMIDRG 763



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 123/280 (43%), Gaps = 20/280 (7%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + +++ L   L K   +    +LF  +    L PD   YNI I+ FCK G++S  F V
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + +        T+ SLI GL  +++I E   L  +++  G  P++ TY T I  LC 
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCE 641

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM----- 189
                 A NL +EM   N        P+  ++  + +  CK    D A+E+F        
Sbjct: 642 GEKVEDATNLLDEMMQKN------IAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICG 695

Query: 190 KDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249
           + E +      Y+ +      A    +A  L   ++D+G +     +  ++  LCK  ++
Sbjct: 696 QKEGL------YSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDEL 749

Query: 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           + AS +L  MI  G   D +    ++DG    G++   KE
Sbjct: 750 EVASGILHKMIDRGYGFDPAALMPVIDGL---GKMGNKKE 786



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 62/114 (54%)

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +P+V  +N+++    K  +++  S L + M+  G+ P    +N L+   C +  V+ A+E
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           LF  M   GC  + F++GIL+ GYCK    +  L L + M S G+ P  V YNT
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNT 222



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 4/173 (2%)

Query: 174 CKEGFVDKAKELFLKMKD---ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230
            K   +DKA   F  ++    EN  P V  Y  L+              L+ +M+  G+ 
Sbjct: 86  AKSNHIDKAFPQFQLVRSRFPEN-KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIA 144

Query: 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290
           P   TFN+++  LC +  +D A  L + M + G +P+   +  L+ G+C  G  ++  EL
Sbjct: 145 PQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLEL 204

Query: 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +MES G + +   Y  +++ +C+    + +  +  +M  +G+ P +VT+N+
Sbjct: 205 LNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNS 257


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 170/330 (51%), Gaps = 7/330 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKMGRVSPGFV 73
           P   S+  + G L ++K  + +  L K++ +   L PD  TYN LI    K G       
Sbjct: 384 PDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALE 443

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L    +  F  D V +++++   C E +I +A  L +++ + GC PDV TYT++++G C
Sbjct: 444 ILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFC 503

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           R G    A  + ++M   +      CKP+A+TY+T  +GLC+ G   +A+++    ++E 
Sbjct: 504 RIGKLDQAKKMMQQMYKHH------CKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEW 557

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             P+ +TY+ ++ G       NEA  +  EM+ +G  PN V  N++++ LC++GK  EA+
Sbjct: 558 WTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREAN 617

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
           +LL+  +  G   +   + T++ GFC    +  A  L   M       D  +Y  LI+  
Sbjct: 618 QLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDAL 677

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            K   IE A  L  +ML +G+ P+ VTY +
Sbjct: 678 AKTDRIEEATELTMKMLRQGLVPSPVTYRS 707



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 161/342 (47%), Gaps = 42/342 (12%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            L   +R+  IG+ P++ TYN LI  +C + +V     ++ ++     +PD V++ +++ 
Sbjct: 335 ALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMG 394

Query: 96  GLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154
            LC + R+ E   L  K++      PD  TY +LI  L + GH   AL + +E       
Sbjct: 395 LLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEK---- 450

Query: 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214
             +  K D + YS I    CKEG + KAKEL  +M  +  +PDVVTYTS++ GFC     
Sbjct: 451 --LRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKL 508

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL---------------- 258
           ++AK +  +M     +PN VT+   +N LC+NGK  EA +++ +                
Sbjct: 509 DQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVV 568

Query: 259 -------------------MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
                              MI  G  P+    N L+   C  G+   A +L     + GC
Sbjct: 569 VHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGC 628

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             +V ++  +I+G+C+  ++E ALSL  +M      P  VTY
Sbjct: 629 AVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTY 670



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 151/309 (48%), Gaps = 12/309 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N L   L+K+ H D  L + +    +    D   Y+ +++ +CK G++     +
Sbjct: 420 PDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKEL 479

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +      PD VT+TS++ G C   ++ +A  +  ++    CKP+  TYTT +NGLCR
Sbjct: 480 VSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCR 539

Query: 135 TGHTIVA---LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191
            G ++ A   +N+ EE      E+     P+AITYS +  GL +EG +++A ++  +M  
Sbjct: 540 NGKSLEARKMMNMSEE------EWWT---PNAITYSVVVHGLRREGKLNEACDVVREMIG 590

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
           +   P+ V    L+   C      EA  L  E M++G   NVV F  +++  C+   ++ 
Sbjct: 591 KGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEA 650

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  LL+ M      PD   Y  L+D    T R+  A EL + M   G +    +Y  +I+
Sbjct: 651 ALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIH 710

Query: 312 GYCKNKEIE 320
            YC+   +E
Sbjct: 711 QYCRKGRVE 719



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 147/308 (47%), Gaps = 10/308 (3%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
           +L L  R   I L P+ + + ++   + + GR+     VL  + ++   P+     + I 
Sbjct: 268 ILRLMTR-RRIQLCPEAFGFVMV--SYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIH 324

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
            L   + + +A     ++   G  P+V TY  LI G C       A+ L ++M +     
Sbjct: 325 ILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKG--- 381

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK-DENINPDVVTYTSLIRGFCYANDW 214
              C PD ++Y T+   LC++  +++ +EL  KM+ D  + PD VTY SLI+        
Sbjct: 382 ---CSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHG 438

Query: 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274
           +EA  +  E      + + V ++ I++  CK GK+ +A  L+  M   G  PD   Y ++
Sbjct: 439 DEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSV 498

Query: 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           +DGFC  G++++AK++   M  + C  +  +Y   +NG C+N +   A  + +    +  
Sbjct: 499 LDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWW 558

Query: 335 RPTVVTYN 342
            P  +TY+
Sbjct: 559 TPNAITYS 566



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 126/272 (46%), Gaps = 8/272 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   ++      L +N        +          P+  TY+++++   + G+++ 
Sbjct: 521 HHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNE 580

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              V+  ++   F P+ V    L+  LC + +  EA  L  +    GC  +V  +TT+I+
Sbjct: 581 ACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIH 640

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G C+      AL+L ++M   N        PD +TY+ + D L K   +++A EL +KM 
Sbjct: 641 GFCQKDDLEAALSLLDDMYLCNKH------PDTVTYTALIDALAKTDRIEEATELTMKML 694

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            + + P  VTY S+I  +C      +   L  +M+ +        +N+++ +LCK G ++
Sbjct: 695 RQGLVPSPVTYRSVIHQYCRKGRVEDLLKLLKKMLLKSRFQ--TAYNLVIEKLCKFGYLE 752

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EA+ LL  +++   R DA   + LM+ +   G
Sbjct: 753 EANSLLGEVLRTASRTDAKTCHVLMESYLNVG 784



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 1/185 (0%)

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           + D+  Y  + + L K      AK +   M    I      +  ++  +  A    +A  
Sbjct: 243 RHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVMVSYSRAGRLRDAMK 302

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
           +   M   GV+PN+   N  ++ L    ++ +A R  E M+ IG+ P+   YN L+ G+C
Sbjct: 303 VLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGYC 362

Query: 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG-IRPTV 338
              +V++A EL   M S GC  D  SY  ++   C++K +     L  +M +   + P  
Sbjct: 363 NVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDH 422

Query: 339 VTYNT 343
           VTYN+
Sbjct: 423 VTYNS 427


>gi|255660984|gb|ACU25661.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 376

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 165/325 (50%), Gaps = 6/325 (1%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
            V SFNI+   L  N   D V+S+++ +   G   D  TY IL++ FCK G +     VL
Sbjct: 58  SVSSFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVL 117

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
               +     DA  ++++I GLC E+ +  A ++   +   GCKP+   Y TLINGL   
Sbjct: 118 EMAEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGA 177

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A+ +F EM        + C P  ITY+T+ +GLCK     +A  L  ++ D+ +N
Sbjct: 178 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLN 231

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P V+TY+ L++G C  +   +A  L+ ++  +G +P+V   N++++ LC  GKM  A  L
Sbjct: 232 PGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSL 291

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M +    P+   +NTLM+GF   G +  A  ++  +  NG   D+ SY I + G C 
Sbjct: 292 YFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCS 351

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVT 340
              I  A+    + ++K I  T +T
Sbjct: 352 CNRISDAILFLHDAVTKKIVLTKIT 376



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 6/289 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           ++NI++       +V     +   + +S F  D++T+  L+ G C    I ++  +    
Sbjct: 61  SFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              G   D F Y+ +INGLC+  +   A+++       NG     CKP+A  Y+T+ +GL
Sbjct: 121 EQKGGVVDAFAYSAMINGLCKEANLDRAVSVL------NGMIKSGCKPNAHVYNTLINGL 174

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
                 + A  +F +M   + +P ++TY +LI G C    + EA  L  E++D+G+ P V
Sbjct: 175 VGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGV 234

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           +T++++M  LC + K+++A +L   +   G +PD  ++N L+ G C  G++  A  L+  
Sbjct: 235 ITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFD 294

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M    C  ++ S+  L+ G+ K+ +I  AL +++ +L  G+ P +++YN
Sbjct: 295 MNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 160/310 (51%), Gaps = 7/310 (2%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D    ++K +    + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNIM 65

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++GL    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++ E MA   G
Sbjct: 66  MRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE-MAEQKG 124

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
             GVV   DA  YS + +GLCKE  +D+A  +   M      P+   Y +LI G   A+ 
Sbjct: 125 --GVV---DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +F EM      P ++T+N ++N LCKN    EA  L++ ++  G+ P    Y+ 
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSM 239

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           LM G CL  +V +A +L+  + S G   DV  + ILI+G C   +++ ALSLY +M    
Sbjct: 240 LMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWK 299

Query: 334 IRPTVVTYNT 343
             P +V++NT
Sbjct: 300 CAPNLVSHNT 309



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 11/247 (4%)

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFG 156
           C    I  A  ++ ++      PD   Y  ++NG  R         L+E M + GN    
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVS 60

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
                   +++ +  GL     VD+   ++  MK      D +TY  L+ GFC  N + +
Sbjct: 61  --------SFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFC-KNGYID 111

Query: 217 AKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
                +EM +Q G   +   ++ ++N LCK   +D A  +L  MI+ G +P+A VYNTL+
Sbjct: 112 KSLHVLEMAEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLI 171

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +G     +   A  +F  M +  C   + +Y  LING CKN+    A +L  E+L KG+ 
Sbjct: 172 NGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLN 231

Query: 336 PTVVTYN 342
           P V+TY+
Sbjct: 232 PGVITYS 238



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 1/170 (0%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G +D A+ ++ ++ +  ++PD V Y +++ G+       +   L+ EMM      +V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELW-EMMGSEGNRSV 59

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            +FN++M  L  N K+DE   + ELM + G   D+  Y  L+ GFC  G ++++  +   
Sbjct: 60  SSFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            E  G + D F+Y  +ING CK   ++ A+S+ + M+  G +P    YNT
Sbjct: 120 AEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNT 169



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 7/172 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M  MH SP  + ++N L   L KN+ +    +L K L   GL P + TY++L+   
Sbjct: 186 VFREMGTMHCSPT-IITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGL 244

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   +V     +  ++    F PD      LI GLC+  ++  A +L+  +  + C P++
Sbjct: 245 CLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNL 304

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
            ++ TL+ G  + G    AL ++  +   NG      +PD I+Y+    GLC
Sbjct: 305 VSHNTLMEGFYKDGDIRNALVIWARILR-NG-----LEPDIISYNITLKGLC 350



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
            P V   NIL   L         LSL+  +N     P+L ++N L+  F K G +    V
Sbjct: 266 KPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           +  RILR+   PD +++   +KGLC+ +RI +A
Sbjct: 326 IWARILRNGLEPDIISYNITLKGLCSCNRISDA 358


>gi|255660952|gb|ACU25645.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 376

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 166/325 (51%), Gaps = 6/325 (1%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
            V SFNI+   L  N   D V+S+++ +   G   D  TY IL++ FCK G +     VL
Sbjct: 58  SVSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL 117

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
               +     DA  ++++I GLC E+ +  A ++   +   GCKP+V  Y TLINGL   
Sbjct: 118 EMAEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGA 177

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A+ +F EM        + C P  ITY+T+ +GLCK     +A  L  ++ D+ ++
Sbjct: 178 SKFEDAIRVFREMGT------MHCPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLD 231

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P V+TY+ L++G C  +    A  L+ ++  +G +P+V   N++++ LC  GKM  A  L
Sbjct: 232 PGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSL 291

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M +    P+   +NTLM+GF   G +  A  ++  +  NG   D+ SY I + G C 
Sbjct: 292 YFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCS 351

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVT 340
            K I  A+    + ++K I  T +T
Sbjct: 352 CKRISDAILFLHDAVTKKIVLTKIT 376



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 149/289 (51%), Gaps = 6/289 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           ++NI++      G+V     +   +  S F  D++T+  L+ G C    I ++  +    
Sbjct: 61  SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              G   D F Y+ +INGLC+  +   AL++       NG     CKP+   Y+T+ +GL
Sbjct: 121 EQKGGVLDAFAYSAMINGLCKEANLDRALSVL------NGMIKSGCKPNVHVYNTLINGL 174

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
                 + A  +F +M   +  P ++TY +LI G C    + EA  L  E++D+G+ P V
Sbjct: 175 AGASKFEDAIRVFREMGTMHCPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGV 234

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           +T++++M  LC + K++ A +L   +   G +PD  ++N L+ G C  G++  A  L+  
Sbjct: 235 ITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFD 294

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M    C  ++ S+  L+ G+ K+ +I  AL +++ +L  G+ P +++YN
Sbjct: 295 MNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 161/310 (51%), Gaps = 7/310 (2%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D    ++K L    + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKELVESKVSPDAVVYNAMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNIM 65

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++GL    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++ E MA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE-MAEQKG 124

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
             GV+   DA  YS + +GLCKE  +D+A  +   M      P+V  Y +LI G   A+ 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASK 179

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +F EM      P ++T+N ++N LCKN    EA  L++ ++  G+ P    Y+ 
Sbjct: 180 FEDAIRVFREMGTMHCPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSM 239

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           LM G CL  +V RA +L+  + S G   DV  + ILI+G C   +++ ALSLY +M    
Sbjct: 240 LMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWK 299

Query: 334 IRPTVVTYNT 343
             P +V++NT
Sbjct: 300 CAPNLVSHNT 309



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 11/247 (4%)

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFG 156
           C    I  A  ++ +L      PD   Y  ++NG  R         L+E M + GN    
Sbjct: 1   CESGDIDGAERVYKELVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVS 60

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
                   +++ +  GL   G VD+   ++  MK+     D +TY  L+ GFC  N + +
Sbjct: 61  --------SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFC-KNGYID 111

Query: 217 AKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
                +EM +Q G   +   ++ ++N LCK   +D A  +L  MI+ G +P+  VYNTL+
Sbjct: 112 KSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLI 171

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +G     +   A  +F  M +  C   + +Y  LING CKN+    A +L  E+L KG+ 
Sbjct: 172 NGLAGASKFEDAIRVFREMGTMHCPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLD 231

Query: 336 PTVVTYN 342
           P V+TY+
Sbjct: 232 PGVITYS 238



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 103/195 (52%), Gaps = 6/195 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N L   LA    ++  + +F+ + ++   P + TYN LIN  CK       + +
Sbjct: 162 PNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCPPTIITYNTLINGLCKNEMFGEAYNL 221

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +L     P  +T++ L+KGLC + ++  A  L+ ++ + G KPDV  +  LI+GLC 
Sbjct: 222 VKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCS 281

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +AL+L+ +M          C P+ ++++T+ +G  K+G +  A  ++ ++    +
Sbjct: 282 VGKMQLALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGL 335

Query: 195 NPDVVTYTSLIRGFC 209
            PD+++Y   ++G C
Sbjct: 336 EPDIISYNITLKGLC 350



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G +D A+ ++ ++ +  ++PD V Y +++ G+       +   L+ EMM      +V
Sbjct: 1   CESGDIDGAERVYKELVESKVSPDAVVYNAMLNGYFRVAKIKDCFELW-EMMGSEGNRSV 59

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            +FN++M  L  NGK+DE   + ELM + G   D+  Y  L+ GFC  G ++++  +   
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            E  G + D F+Y  +ING CK   ++ ALS+ + M+  G +P V  YNT
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNT 169



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 7/172 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M  MH  PP + ++N L   L KN+ +    +L K L   GL P + TY++L+   
Sbjct: 186 VFREMGTMH-CPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGL 244

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   +V     +  ++    F PD      LI GLC+  ++  A +L+  +  + C P++
Sbjct: 245 CLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNL 304

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
            ++ TL+ G  + G    AL ++  +   NG      +PD I+Y+    GLC
Sbjct: 305 VSHNTLMEGFYKDGDIRNALVIWARILR-NG-----LEPDIISYNITLKGLC 350



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V   NIL   L         LSL+  +N     P+L ++N L+  F K G +    V+
Sbjct: 267 PDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVI 326

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
             RILR+   PD +++   +KGLC+  RI +A
Sbjct: 327 WARILRNGLEPDIISYNITLKGLCSCKRISDA 358


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 166/336 (49%), Gaps = 6/336 (1%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           + R H    P  +   +   L K +++  V   ++ +   G    LY +NIL++ FCK G
Sbjct: 97  LTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            +     V   I +    P   ++ +L+ G      + E   L + + A G +PDV+TY+
Sbjct: 157 DIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYS 216

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
            LINGL +         LF+EM       G+V  P+++T++T+ DG CK G VD A E++
Sbjct: 217 VLINGLXKESXMDDXNELFDEMLXK----GLV--PNSVTFTTLIDGHCKNGRVDLAMEIY 270

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
            +M  + + PD +TY +L  G C   D N+A  L  EM  +G++P+  T+  +++  CK 
Sbjct: 271 KQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKE 330

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G +D A    + MIQ  +  D   Y  L+ G C  GR   A+++   M S G   D  +Y
Sbjct: 331 GDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDXGTY 390

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            ++IN +CK  ++        EM   G  P VVTYN
Sbjct: 391 TMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTYN 426



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 158/299 (52%), Gaps = 6/299 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +  FNIL     K+       S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFR 198

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +   +  S   PD  T++ LI GL  ES + +   LF ++   G  P+  T+TTLI+G C
Sbjct: 199 LKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHC 258

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
           + G   +A+ ++++M            PD ITY+T+  GLCK+G +++A  L  +M  + 
Sbjct: 259 KNGRVDLAMEIYKQM------LSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKG 312

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD  TYT+LI G C   D + A      M+ + +  + V +  +++ LC+ G+  +A 
Sbjct: 313 LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAE 372

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
           ++L  M+ +G++PD   Y  +++ FC  G V +  +    M+ NG +  V +Y +L+NG
Sbjct: 373 KMLREMLSVGLKPDXGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTYNVLMNG 431



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 90/171 (52%)

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
            CK+G +  A+ +F  +    + P V +Y +L+ G+      +E   L   M   GVQP+
Sbjct: 152 FCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPD 211

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
           V T++V++N L K   MD+ + L + M+  G+ P++  + TL+DG C  GRV+ A E++ 
Sbjct: 212 VYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYK 271

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            M S     D  +Y  L  G CK  ++  A  L  EM  KG++P   TY T
Sbjct: 272 QMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTT 322



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 12/237 (5%)

Query: 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVC------KPDAITY 166
           +  + +Y T+I+ LC       A +L + + +  G+      F  +       + D   +
Sbjct: 16  RHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVF 75

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           S +     + GF+  A E +   ++  +     T   ++        +      + E+++
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILE 135

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G   ++  FN++M+  CK+G +  A  + + + + G+RP    YNTLM+G+   G ++ 
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDE 195

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
              L  +M ++G   DV++Y +LING  K   ++    L+ EML KG+ P  VT+ T
Sbjct: 196 GFRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTT 252


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 167/340 (49%), Gaps = 9/340 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M R       +C +N L     + K  D V  + K + + G+ P + TY IL++  
Sbjct: 165 LLDEMPRHGVKVNALC-YNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGL 223

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
                ++    V   +     + D   ++S+I   C    +  A+ +F +    G +P+ 
Sbjct: 224 SAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNE 283

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
            TY  LING C+ G    A  L  +M   G G        + I ++T+ DG C++  VDK
Sbjct: 284 HTYGALINGFCKIGQMEAAEMLVTDMQVRGVG-------INQIVFNTMIDGYCRKNMVDK 336

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
           A E+ + M+   I  DV TY +L  G   AN  +EAK L   M+++GV+PN V++  +++
Sbjct: 337 ALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLIS 396

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
             C  G M EA RL   M   G  P    YN +MDG+   G +  A+     ME  G + 
Sbjct: 397 IHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVP 456

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           D++SY  L++G+C N +++ AL L+ EM  +G +P +V Y
Sbjct: 457 DIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAY 496



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 162/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++ IL   L+  +    V ++F+ + S  L  D+Y Y+ +IN +C+ G V     V
Sbjct: 211 PTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEV 270

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
               + +   P+  T+ +LI G C   ++  A  L T ++  G   +   + T+I+G CR
Sbjct: 271 FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCR 330

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL +   M     E       D  TY+T+  GL +   +D+AK L   M ++ +
Sbjct: 331 KNMVDKALEIKMIMEKMGIEL------DVYTYNTLACGLRRANRMDEAKNLLRIMIEKGV 384

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V+YT+LI   C   D  EA+ LF EM   G +P++VT+NV+M+   K G + EA R
Sbjct: 385 RPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAER 444

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
               M + G+ PD   Y  L+ G C+ G+V+ A  LF  M+  G   ++ +Y  LI+G  
Sbjct: 445 FKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLA 504

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K    E A  LY  ML  G+ P    Y+ 
Sbjct: 505 KEGRSEEAFQLYDNMLGDGLTPDDALYSA 533



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 11/281 (3%)

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTS---LIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           G +     +L +   SC  PD+VT  S   ++ G C   R+  A  L  ++   G K + 
Sbjct: 121 GHLDTAADLLKQAATSC--PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNA 178

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
             Y +L++   R         + + M N   E      P   TY+ + DGL     + K 
Sbjct: 179 LCYNSLLDAYTREKDDDRVAEMLKVMENEGIE------PTVGTYTILVDGLSAARDITKV 232

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
           + +F +MK +N++ DV  Y+S+I  +C A +   A  +F E +  G++PN  T+  ++N 
Sbjct: 233 EAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALING 292

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G+M+ A  L+  M   GV  +  V+NT++DG+C    V++A E+ + ME  G   D
Sbjct: 293 FCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELD 352

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           V++Y  L  G  +   ++ A +L   M+ KG+RP  V+Y T
Sbjct: 353 VYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTT 393



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 6/235 (2%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN +     +    D  L +   +  +G+  D+YTYN L     +  R+     +L  ++
Sbjct: 321 FNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMI 380

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ V++T+LI   C E  ++EA  LF ++   G +P + TY  +++G  + G   
Sbjct: 381 EKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIR 440

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            A     EM     + G+V  PD  +Y+ +  G C  G VD A  LF +MK     P++V
Sbjct: 441 EAERFKNEME----KKGLV--PDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLV 494

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            YT+LI G        EA  L+  M+  G+ P+   ++ ++  L  + K +   R
Sbjct: 495 AYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQNVKPR 549



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 38/88 (43%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S+  L      N   D  L LF+ +   G  P+L  Y  LI+   K GR    F +
Sbjct: 456 PDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQL 515

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESR 102
              +L    TPD   +++L+  L  + +
Sbjct: 516 YDNMLGDGLTPDDALYSALVGSLHTDKK 543


>gi|255660990|gb|ACU25664.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 376

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 165/325 (50%), Gaps = 6/325 (1%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
            V SFNI+   L  N   D V+S+++ +   G   D  TY IL++ FCK G +     VL
Sbjct: 58  SVSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVL 117

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
               +     DA  ++++I GLC E+ +  A ++   +   GCKP+   Y TLINGL   
Sbjct: 118 EMAQQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGA 177

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A+ +F EM        + C P  ITY+T+ +GLCK     +A  L  ++ D+ +N
Sbjct: 178 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLN 231

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P V+TY+ L++G C  +   +A  L+ ++  +G +P+V   N++++ LC  GKM  A  L
Sbjct: 232 PGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSL 291

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M +    P+   +NTLM+GF   G +  A  ++  +  NG   D+ SY I + G C 
Sbjct: 292 YFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCS 351

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVT 340
              I  A+    + ++K I  T +T
Sbjct: 352 CNRISDAILFLHDAVTKKIVLTKIT 376



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 154/289 (53%), Gaps = 6/289 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           ++NI++      G+V     +   + +S F  D++T+  L+ G C    I ++  +    
Sbjct: 61  SFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
           +  G   D F Y+ +INGLC+  +   A+++       NG     CKP+A  Y+T+ +GL
Sbjct: 121 QQKGGVLDAFAYSAMINGLCKEANLDRAVSVL------NGMIKSGCKPNAHVYNTLINGL 174

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
                 + A  +F +M   + +P ++TY +LI G C    + EA  L  E++D+G+ P V
Sbjct: 175 VGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGV 234

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           +T++++M  LC + K+++A +L   +   G +PD  ++N L+ G C  G++  A  L+  
Sbjct: 235 ITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFD 294

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M    C  ++ S+  L+ G+ K+ +I  AL +++ +L  G+ P +++YN
Sbjct: 295 MNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 160/310 (51%), Gaps = 7/310 (2%)

Query: 34  DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93
           D    ++K +    + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNIM 65

Query: 94  IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153
           ++GL    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++ E MA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE-MAQQKG 124

Query: 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213
             GV+   DA  YS + +GLCKE  +D+A  +   M      P+   Y +LI G   A+ 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273
           + +A  +F EM      P ++T+N ++N LCKN    EA  L++ ++  G+ P    Y+ 
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSM 239

Query: 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333
           LM G CL  +V +A +L+  + S G   DV  + ILI+G C   +++ ALSLY +M    
Sbjct: 240 LMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWK 299

Query: 334 IRPTVVTYNT 343
             P +V++NT
Sbjct: 300 CAPNLVSHNT 309



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 116/247 (46%), Gaps = 11/247 (4%)

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-ANGNGEFG 156
           C    I  A  ++ ++      PD   Y  ++NG  R         L+E M + GN    
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVS 60

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
                   +++ +  GL   G VD+   ++  MK      D +TY  L+ GFC  N + +
Sbjct: 61  --------SFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFC-KNGYID 111

Query: 217 AKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275
                +EM  Q G   +   ++ ++N LCK   +D A  +L  MI+ G +P+A VYNTL+
Sbjct: 112 KSLHVLEMAQQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLI 171

Query: 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
           +G     +   A  +F  M +  C   + +Y  LING CKN+    A +L  E+L KG+ 
Sbjct: 172 NGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLN 231

Query: 336 PTVVTYN 342
           P V+TY+
Sbjct: 232 PGVITYS 238



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           C+ G +D A+ ++ ++ +  ++PD V Y +++ G+       +   L+ EMM      +V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELW-EMMGSEGNRSV 59

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
            +FN++M  L  NGK+DE   + ELM + G   D+  Y  L+ GFC  G ++++  +   
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +  G + D F+Y  +ING CK   ++ A+S+ + M+  G +P    YNT
Sbjct: 120 AQQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNT 169



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 7/172 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M  MH SP  + ++N L   L KN+ +    +L K L   GL P + TY++L+   
Sbjct: 186 VFREMGTMHCSPT-IITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGL 244

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   +V     +  ++    F PD      LI GLC+  ++  A +L+  +  + C P++
Sbjct: 245 CLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNL 304

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
            ++ TL+ G  + G    AL ++  +   NG      +PD I+Y+    GLC
Sbjct: 305 VSHNTLMEGFYKDGDIRNALVIWARILR-NG-----LEPDIISYNITLKGLC 350



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
            P V   NIL   L         LSL+  +N     P+L ++N L+  F K G +    V
Sbjct: 266 KPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           +  RILR+   PD +++   +KGLC+ +RI +A
Sbjct: 326 IWARILRNGLEPDIISYNITLKGLCSCNRISDA 358


>gi|255660982|gb|ACU25660.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 350

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 165/325 (50%), Gaps = 6/325 (1%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
            V SFNI+   L  N   D V+S+++ +   G   D  TY IL++ FCK G +     VL
Sbjct: 32  SVSSFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVL 91

Query: 76  GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135
               +     DA  ++++I GLC E+ +  A ++   +   GCKP+   Y TLINGL   
Sbjct: 92  EMAEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGA 151

Query: 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN 195
                A+ +F EM        + C P  ITY+T+ +GLCK     +A  L  ++ D+ +N
Sbjct: 152 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLN 205

Query: 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
           P V+TY+ L++G C  +   +A  L+ ++  +G +P+V   N++++ LC  GKM  A  L
Sbjct: 206 PGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSL 265

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M +    P+   +NTLM+GF   G +  A  ++  +  NG   D+ SY I + G C 
Sbjct: 266 YFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCS 325

Query: 316 NKEIEGALSLYSEMLSKGIRPTVVT 340
              I  A+    + ++K I  T +T
Sbjct: 326 CNRISDAILFLHDAVTKKIVLTKIT 350



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 152/289 (52%), Gaps = 6/289 (2%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
           ++NI++       +V     +   + +S F  D++T+  L+ G C    I ++  +    
Sbjct: 35  SFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 94

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
              G   D F Y+ +INGLC+  +   A+++       NG     CKP+A  Y+T+ +GL
Sbjct: 95  EQKGGVVDAFAYSAMINGLCKEANLDRAVSVL------NGMIKSGCKPNAHVYNTLINGL 148

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
                 + A  +F +M   + +P ++TY +LI G C    + EA  L  E++D+G+ P V
Sbjct: 149 VGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGV 208

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           +T++++M  LC + K+++A +L   +   G +PD  ++N L+ G C  G++  A  L+  
Sbjct: 209 ITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFD 268

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           M    C  ++ S+  L+ G+ K+ +I  AL +++ +L  G+ P +++YN
Sbjct: 269 MNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 317



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 151/288 (52%), Gaps = 7/288 (2%)

Query: 56  NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA 115
           N ++N + ++ ++   F  L  ++ S       +F  +++GL    ++ E  +++  ++ 
Sbjct: 3   NAMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNIMMRGLFDNDKVDEVISIWELMKK 61

Query: 116 FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
            G   D  TY  L++G C+ G+   +L++ E MA   G  GVV   DA  YS + +GLCK
Sbjct: 62  SGFVEDSITYGILVHGFCKNGYIDKSLHVLE-MAEQKG--GVV---DAFAYSAMINGLCK 115

Query: 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235
           E  +D+A  +   M      P+   Y +LI G   A+ + +A  +F EM      P ++T
Sbjct: 116 EANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIIT 175

Query: 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
           +N ++N LCKN    EA  L++ ++  G+ P    Y+ LM G CL  +V +A +L+  + 
Sbjct: 176 YNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVT 235

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           S G   DV  + ILI+G C   +++ ALSLY +M      P +V++NT
Sbjct: 236 SKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNT 283



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 7/172 (4%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M  MH SP  + ++N L   L KN+ +    +L K L   GL P + TY++L+   
Sbjct: 160 VFREMGTMHCSPT-IITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGL 218

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C   +V     +  ++    F PD      LI GLC+  ++  A +L+  +  + C P++
Sbjct: 219 CLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNL 278

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
            ++ TL+ G  + G    AL ++  +     E      PD I+Y+    GLC
Sbjct: 279 VSHNTLMEGFYKDGDIRNALVIWARILRNGLE------PDIISYNITLKGLC 324



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
            P V   NIL   L         LSL+  +N     P+L ++N L+  F K G +    V
Sbjct: 240 KPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 299

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           +  RILR+   PD +++   +KGLC+ +RI +A
Sbjct: 300 IWARILRNGLEPDIISYNITLKGLCSCNRISDA 332


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 162/315 (51%), Gaps = 6/315 (1%)

Query: 27  LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86
           L +N   +      + +   G  PD+     LI  FCK+G+      ++  I  S   PD
Sbjct: 94  LVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPD 153

Query: 87  AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146
            +T+  LI G+C+  R M+A  L   +   GC P V T+  LIN LCR G    A+++ E
Sbjct: 154 VITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLE 213

Query: 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206
           +M          C P++++Y+ +  G CKE  +++A E   KM      PD+VTY +L+ 
Sbjct: 214 KMPKHG------CTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLT 267

Query: 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP 266
             C     + A  L  ++  +G  P ++T+N +++ L K GK D+A++LL+ M   G++P
Sbjct: 268 ALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKP 327

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
           D   Y++L+ G    G+V+ A + F  +E  G   +  +Y  ++ G CK ++ + A+   
Sbjct: 328 DIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFL 387

Query: 327 SEMLSKGIRPTVVTY 341
           + M+ +G +PT  +Y
Sbjct: 388 AYMVQRGCKPTEASY 402



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 148/289 (51%), Gaps = 10/289 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L   +     +     L   +   G  P + T+NILIN  C+ G +     V
Sbjct: 152 PDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDV 211

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++ +   TP+++++  L+ G C E ++  A     K+ + GC PD+ TY TL+  LC+
Sbjct: 212 LEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCK 271

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ L  ++++        C P  ITY+T+ DGL K G  D+A +L  +M+ + +
Sbjct: 272 DGKVDAAVELLNQLSSKG------CSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGL 325

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD++TY+SL+ G       +EA   F ++   GV+PN +T+N IM  LCK  K D A  
Sbjct: 326 KPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAID 385

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            L  M+Q G +P  + Y  L++G    G    A EL   +    C+R V
Sbjct: 386 FLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNEL----CLRGV 430



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 149/288 (51%), Gaps = 6/288 (2%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G  PD+ TYN+LI+  C  GR      +L  ++R   +P  VTF  LI  LC +  +  A
Sbjct: 149 GAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRA 208

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +  K+   GC P+  +Y  L++G C+      A+    +M +        C PD +TY
Sbjct: 209 IDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRG------CYPDIVTY 262

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+   LCK+G VD A EL  ++  +  +P ++TY ++I G       ++A  L  EM  
Sbjct: 263 NTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRA 322

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
           +G++P+++T++ ++  L + GK+DEA +    +  +GV+P+A  YN +M G C   + +R
Sbjct: 323 KGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDR 382

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
           A +    M   GC     SY ILI G       + AL L +E+  +G+
Sbjct: 383 AIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGV 430



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 159/327 (48%), Gaps = 9/327 (2%)

Query: 19  SFNILFGCLAK--NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           SFN     L K  N H          ++S+  F ++ + N L +   + G +  GF  L 
Sbjct: 50  SFNGKLQSLDKLPNGHLGNGHVSLSPIHSLTNFEEIESNNNL-SKLVRNGELEEGFRFLE 108

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            ++     PD +  TSLI+G C   +  +A  +   +   G  PDV TY  LI+G+C TG
Sbjct: 109 SMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTG 168

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
             + A  L  +M          C P  +T++ + + LC++G + +A ++  KM      P
Sbjct: 169 RWMDAEKLLADMVRRG------CSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTP 222

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
           + ++Y  L+ GFC       A     +M  +G  P++VT+N ++  LCK+GK+D A  LL
Sbjct: 223 NSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELL 282

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             +   G  P    YNT++DG    G+ ++A +L   M + G   D+ +Y  L+ G  + 
Sbjct: 283 NQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSRE 342

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
            +++ A+  + ++   G++P  +TYN 
Sbjct: 343 GKVDEAIKFFHDLEVLGVKPNAITYNA 369



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 107/219 (48%), Gaps = 6/219 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   S+N L     K K  +  +    ++ S G +PD+ TYN L+   CK G+V  
Sbjct: 218 HGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDA 277

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +L ++     +P  +T+ ++I GL    +  +AA L  ++RA G KPD+ TY++L+ 
Sbjct: 278 AVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVG 337

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           GL R G    A+  F ++       GV  KP+AITY+ I  GLCK    D+A +    M 
Sbjct: 338 GLSREGKVDEAIKFFHDLE----VLGV--KPNAITYNAIMLGLCKARKTDRAIDFLAYMV 391

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229
                P   +YT LI G  Y     EA  L  E+  +GV
Sbjct: 392 QRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGV 430


>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
 gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
          Length = 849

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 165/328 (50%), Gaps = 15/328 (4%)

Query: 15  PPVCSFNILFGCLAKNKH---YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71
           P   SFNI+   L K       D  LSLF+ +  +G   D   YN LI+  CK  R+   
Sbjct: 450 PNTASFNIVIHGLLKTTSKLDQDAALSLFEDMVQLGCERDQLLYNNLIDALCKSDRLKES 509

Query: 72  FVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131
           + +L  + +S   P   T+ S+   LC     + A  L  ++R  G +P +   T L+  
Sbjct: 510 YKLLRDMEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPWIKHSTLLVKQ 569

Query: 132 LCRTGHTIVALNLFEEMANGNGEFGVVCK---PDAITYSTITDGLCKEGFVDKAKELFLK 188
           LC+ G  I A N   +M         VC+   PD ++YS   DGL K   +D+A ELF  
Sbjct: 570 LCKNGRAIEASNFLADM---------VCEGFLPDIVSYSAAMDGLVKINKLDRALELFQD 620

Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248
           +      PDVV++  LI+G+C A   NEA     +M   G+ P+ V++N+++NE CKNG 
Sbjct: 621 ICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGD 680

Query: 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308
           +D+A   L  M +   +P    Y TL++G C +GR + AK L+  M+  GC  +  +Y  
Sbjct: 681 IDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMA 740

Query: 309 LINGYCKNKEIEGALSLYSEMLSKGIRP 336
           +++G CK  + + AL  Y  M  K ++P
Sbjct: 741 IVHGLCKCGKPDEALVYYHSMEEKEMKP 768



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 163/380 (42%), Gaps = 59/380 (15%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD------------------------- 51
           V  +++L G L K + ++  ++LF ++  +G+ PD                         
Sbjct: 332 VSIYDVLIGGLCKKRAFEKAMALFFKMKMLGITPDVQILAKLVASSPEERVVIMLLGERP 391

Query: 52  --------LYTYNILINCFCKMGRVSPG----FVVLGRILRS-------------CFTPD 86
                   ++ +N ++      G+V        +++G   RS                P+
Sbjct: 392 KDINDEGMIFLFNSVLKFLVNAGKVESTCYLLQLMMGNESRSDNIHILDIHQTFKKLLPN 451

Query: 87  AVTFTSLIKGLCAESRIME---AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143
             +F  +I GL   +  ++   A +LF  +   GC+ D   Y  LI+ LC++     +  
Sbjct: 452 TASFNIVIHGLLKTTSKLDQDAALSLFEDMVQLGCERDQLLYNNLIDALCKSDRLKESYK 511

Query: 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203
           L  +M           +P   TY++I   LC+      A EL  +M+     P +   T 
Sbjct: 512 LLRDMEQSR------LQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPWIKHSTL 565

Query: 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263
           L++  C      EA     +M+ +G  P++V+++  M+ L K  K+D A  L + +   G
Sbjct: 566 LVKQLCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTRG 625

Query: 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
            RPD   +N L+ G+C  G+VN A      M   G +    SY +LIN +CKN +I+ A+
Sbjct: 626 CRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAI 685

Query: 324 SLYSEMLSKGIRPTVVTYNT 343
              S+M  +  +PT+++Y T
Sbjct: 686 LCLSQMNEENKKPTIISYTT 705



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 126/258 (48%), Gaps = 8/258 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + S++     L K    D  L LF+ + + G  PD+ ++NILI  +CK G+V+  +  
Sbjct: 593 PDIVSYSAAMDGLVKINKLDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNEAYNF 652

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L ++  +   P AV++  LI   C    I +A    +++     KP + +YTTLING C 
Sbjct: 653 LHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLINGCCN 712

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           +G    A  L+ EM          C P+ ITY  I  GLCK G  D+A   +  M+++ +
Sbjct: 713 SGRPDDAKILWNEMQEKG------CSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEM 766

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN--VIMNELCKNGKMDEA 252
            PD     +LI  F   ++++ A  +  E +++G  P+    N   I + + K  K ++ 
Sbjct: 767 KPDSYVSVALIDAFISKHNFSMAFNILKETIEKGNIPDPTDKNYVTIKDAIFKLSKDEQT 826

Query: 253 SRLLELMIQIGVRPDASV 270
              ++ +I+ G  P  SV
Sbjct: 827 GLEVKALIEKGRIPTISV 844



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 129/287 (44%), Gaps = 29/287 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N +FGCL + +     + L + +   G  P +    +L+   CK GR       
Sbjct: 523 PTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPWIKHSTLLVKQLCKNGRAIEASNF 582

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++   F PD V++++ + GL   +++  A  LF  +   GC+PDV ++  LI G C+
Sbjct: 583 LADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTRGCRPDVVSHNILIKGYCK 642

Query: 135 TGHTIVALNLFEEM--------------------ANGNGEFGVVC---------KPDAIT 165
            G    A N   +M                     NG+ +  ++C         KP  I+
Sbjct: 643 AGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIIS 702

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225
           Y+T+ +G C  G  D AK L+ +M+++  +P+ +TY +++ G C     +EA   +  M 
Sbjct: 703 YTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSME 762

Query: 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYN 272
           ++ ++P+      +++          A  +L+  I+ G  PD +  N
Sbjct: 763 EKEMKPDSYVSVALIDAFISKHNFSMAFNILKETIEKGNIPDPTDKN 809



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 155/407 (38%), Gaps = 86/407 (21%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           F+IL    +K    D  +    R+    L  +  T+  LI+ F K  R      +L ++L
Sbjct: 265 FSILALAFSKWGEVDRTMQFIDRMEDQNLMLNGKTFYALIHGFVKESREDMALKLLEKML 324

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           +  FT D   +  LI GLC +    +A ALF K++  G  PDV     L+         +
Sbjct: 325 KLGFTLDVSIYDVLIGGLCKKRAFEKAMALFFKMKMLGITPDVQILAKLVAS--SPEERV 382

Query: 140 VALNLFEEMANGNGE-----FGVVCK---------------------------------- 160
           V + L E   + N E     F  V K                                  
Sbjct: 383 VIMLLGERPKDINDEGMIFLFNSVLKFLVNAGKVESTCYLLQLMMGNESRSDNIHILDIH 442

Query: 161 -------PDAITYSTITDGLCKEGF---VDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
                  P+  +++ +  GL K       D A  LF  M       D + Y +LI   C 
Sbjct: 443 QTFKKLLPNTASFNIVIHGLLKTTSKLDQDAALSLFEDMVQLGCERDQLLYNNLIDALCK 502

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVI------------------------------- 239
           ++   E+  L  +M    +QP   T+N I                               
Sbjct: 503 SDRLKESYKLLRDMEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPWIKH 562

Query: 240 ----MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295
               + +LCKNG+  EAS  L  M+  G  PD   Y+  MDG     +++RA ELF  + 
Sbjct: 563 STLLVKQLCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDIC 622

Query: 296 SNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           + GC  DV S+ ILI GYCK  ++  A +   +M   G+ P+ V+YN
Sbjct: 623 TRGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYN 669



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 144/391 (36%), Gaps = 64/391 (16%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +FD +  M    P   S+N L   L+K    D++ +    +   G   D YT   ++  +
Sbjct: 179 LFDQVRSMDLCIPNNYSYNCLLEILSKTNSIDSIENRLMEMKDFGWEVDKYTLTPVLMAY 238

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
           C  G+     +V   +    +  D   F+ L         +        ++       + 
Sbjct: 239 CNAGKFDKALIVFNDMHERGWV-DGYVFSILALAFSKWGEVDRTMQFIDRMEDQNLMLNG 297

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC--KPDAITYSTITDGLCKEGFVD 180
            T+  LI+G  +           E+MA    E  +      D   Y  +  GLCK+   +
Sbjct: 298 KTFYALIHGFVKESR--------EDMALKLLEKMLKLGFTLDVSIYDVLIGGLCKKRAFE 349

Query: 181 KAKELFLKMKDENINPDVVTYTSL------------------------------------ 204
           KA  LF KMK   I PDV     L                                    
Sbjct: 350 KAMALFFKMKMLGITPDVQILAKLVASSPEERVVIMLLGERPKDINDEGMIFLFNSVLKF 409

Query: 205 ------IRGFCYANDW---NEAKCLFIEMMD-----QGVQPNVVTFNVIMNELCK-NGKM 249
                 +   CY       NE++   I ++D     + + PN  +FN++++ L K   K+
Sbjct: 410 LVNAGKVESTCYLLQLMMGNESRSDNIHILDIHQTFKKLLPNTASFNIVIHGLLKTTSKL 469

Query: 250 DE--ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           D+  A  L E M+Q+G   D  +YN L+D  C + R+  + +L   ME +      F+Y 
Sbjct: 470 DQDAALSLFEDMVQLGCERDQLLYNNLIDALCKSDRLKESYKLLRDMEQSRLQPTHFTYN 529

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
            +    C+ ++  GA+ L  EM   G  P +
Sbjct: 530 SIFGCLCRREDTVGAIELLREMRGHGHEPWI 560



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 4/172 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           F + +R+    P   S+N+L     KN   D  +    ++N     P + +Y  LIN  C
Sbjct: 652 FLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLINGCC 711

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
             GR     ++   +     +P+ +T+ +++ GLC   +  EA   +  +     KPD +
Sbjct: 712 NSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEMKPDSY 771

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175
               LI+      +  +A N+ +E      E G +  P    Y TI D + K
Sbjct: 772 VSVALIDAFISKHNFSMAFNILKETI----EKGNIPDPTDKNYVTIKDAIFK 819


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 166/331 (50%), Gaps = 5/331 (1%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           +F  M R     P   ++N L   L  + + +    L   +    +  +++TY+ +I   
Sbjct: 67  LFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSL 126

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
            K  +    + VL  ++ +   PD   F  +++G    + + +A  ++  +   G KPD 
Sbjct: 127 VKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDN 186

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            +Y  LI+GL + G    +L +  EMA     +     P+ IT+ST+  GLC+ G ++KA
Sbjct: 187 VSYHILIHGLAKIGKLDESLKILSEMAMRAAGY----VPNVITFSTLIHGLCRTGELEKA 242

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
            E+F  M +    P+  TYT+LI G C A    +A+ LF +M    + P+ V +N ++  
Sbjct: 243 LEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAG 302

Query: 243 LCKNGKMDEASRLL-ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
            CK G MDEA +L  E+    G++P    +NTL+DGFC  G++ RA EL   M + G   
Sbjct: 303 YCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAA 362

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEMLSK 332
           D  +Y ILI G  +  +++ AL +Y +M  K
Sbjct: 363 DTCTYRILIAGLSRATKLDEALEVYKQMREK 393



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 162/329 (49%), Gaps = 10/329 (3%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +++ +   LAK       L +F+ + S    P L TYN+LIN  C  G       +   +
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 79  LRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
            R     PD  T+ +LI GLC+      A  L +++R      +VFTY+++I  L +   
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              +  + EEM          C PD   ++ +  G  +   ++KA+E++  M +    PD
Sbjct: 132 PEESYKVLEEM------MAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPD 185

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMM--DQGVQPNVVTFNVIMNELCKNGKMDEASRL 255
            V+Y  LI G       +E+  +  EM     G  PNV+TF+ +++ LC+ G++++A  +
Sbjct: 186 NVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEV 245

Query: 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315
              M++ G +P+   Y TL+ G C   +V +A+ELF  M       D  +Y  LI GYCK
Sbjct: 246 FGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCK 305

Query: 316 NKEIEGALSLYSEML-SKGIRPTVVTYNT 343
              ++ A  LY EM    G++PT+VT+NT
Sbjct: 306 RGSMDEAEKLYREMSGGAGLQPTIVTFNT 334



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V +++ +   L K    +    + + + + G  PD++ +N ++  F +   +     V  
Sbjct: 116 VFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQ 175

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--RAFGCKPDVFTYTTLINGLCR 134
            ++ S + PD V++  LI GL    ++ E+  + +++  RA G  P+V T++TLI+GLCR
Sbjct: 176 HMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCR 235

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
           TG    AL +F  M          CKP+  TY+T+  GLC+   V +A+ELF KM    I
Sbjct: 236 TGELEKALEVFGSMLEAG------CKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACI 289

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD-QGVQPNVVTFNVIMNELCKNGKMDEAS 253
            PD V Y SLI G+C     +EA+ L+ EM    G+QP +VTFN +++  CK GK+  A+
Sbjct: 290 PPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRAN 349

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L+  M   G+  D   Y  L+ G     +++ A E++  M     + D  S    + G 
Sbjct: 350 ELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGL 409

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           CK   I+ A +++      G  P   T+
Sbjct: 410 CKTGNIDQAYAVFEATRKSGAVPNPETF 437



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 166/323 (51%), Gaps = 9/323 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +FN +    A++ + +    +++ +   G  PD  +Y+ILI+   K+G++     +
Sbjct: 149 PDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKI 208

Query: 75  LGRI-LRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
           L  + +R+  + P+ +TF++LI GLC    + +A  +F  +   GCKP+ +TYTTLI GL
Sbjct: 209 LSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGL 268

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD- 191
           CR    I A  LFE+M            PDA+ Y+++  G CK G +D+A++L+ +M   
Sbjct: 269 CRAEKVIQARELFEKMTQ------ACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGG 322

Query: 192 ENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
             + P +VT+ +LI GFC       A  L  EM  +G+  +  T+ +++  L +  K+DE
Sbjct: 323 AGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDE 382

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A  + + M +     D     + + G C TG +++A  +F +   +G + +  ++ IL  
Sbjct: 383 ALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSE 442

Query: 312 GYCKNKEIEGALSLYSEMLSKGI 334
              K   +E A  L     ++ I
Sbjct: 443 SLIKLGRVEDAQKLMEPAKARDI 465



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 8/291 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRL--NSIGLFPDLYTYNILIN 60
           ++ +M+     P  V S++IL   LAK    D  L +   +   + G  P++ T++ LI+
Sbjct: 173 VYQHMVESGYKPDNV-SYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIH 231

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C+ G +     V G +L +   P+  T+T+LI GLC   ++++A  LF K+      P
Sbjct: 232 GLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPP 291

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           D   Y +LI G C+ G    A  L+ EM+ G G      +P  +T++T+ DG CK G + 
Sbjct: 292 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAG-----LQPTIVTFNTLIDGFCKLGKLG 346

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
           +A EL  +M  + +  D  TY  LI G   A   +EA  ++ +M ++    + V+    +
Sbjct: 347 RANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFV 406

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291
             LCK G +D+A  + E   + G  P+   +  L +     GRV  A++L 
Sbjct: 407 GGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 457



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 38/223 (17%)

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY----------------- 201
           C      Y  +   L K G + +A E+F  MK E+  P +VTY                 
Sbjct: 6   CAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKAL 65

Query: 202 -------------------TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
                               +LI G C + +   A+ L  EM D+ +  NV T++ I+  
Sbjct: 66  DLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKS 125

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           L K  K +E+ ++LE M+  G  PD   +N +M GF  +  + +A+E++  M  +G   D
Sbjct: 126 LVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPD 185

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEML--SKGIRPTVVTYNT 343
             SY ILI+G  K  +++ +L + SEM   + G  P V+T++T
Sbjct: 186 NVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFST 228


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+N +   L K    +    L   + + GL P+  T+NIL++ +CK+G +     V
Sbjct: 245 PDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQV 304

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + ++   PD  T+  LI GLC + +I EA  L  ++      PDV TY TLING   
Sbjct: 305 IDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFD 364

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
              ++    L ++M       G   KP+A+TY+ +     KEG +D A     KM++   
Sbjct: 365 CSSSLKGFELIDKME------GKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGF 418

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           +PD VT+ +LI G+C A   +EA  +  EM  +G++ N VT N I++ LC   K+D+A +
Sbjct: 419 SPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYK 478

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LL    + G   D   Y TL+ G+   G+   A +L+  M+    +  + +Y  +I G C
Sbjct: 479 LLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLC 538

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            + + + ++   +E+L  G+ P   TYNT
Sbjct: 539 HSGKTDQSIDKLNELLESGLVPDETTYNT 567



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 166/329 (50%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V ++N+L G L K+   D    L   + ++ L PD+ TYN LIN          GF +
Sbjct: 315 PDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFEL 374

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           + ++      P+AVT+  ++K    E ++  A     K+   G  PD  T+ TLING C+
Sbjct: 375 IDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCK 434

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  + +EM+          K +++T +TI   LC E  +D A +L         
Sbjct: 435 AGRLSEAFRMMDEMSRKG------LKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGY 488

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
             D V+Y +LI G+       EA  L+ EM ++ + P+++T+N ++  LC +GK D++  
Sbjct: 489 FVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSID 548

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L  +++ G+ PD + YNT++ G+C  G+V +A +    M       D+F+  IL+ G C
Sbjct: 549 KLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLC 608

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
               ++ AL L++  +SKG     VTYNT
Sbjct: 609 TEGMLDKALKLFNTWISKGKAIDAVTYNT 637



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 169/326 (51%), Gaps = 8/326 (2%)

Query: 19  SFNIL-FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGR 77
           +FNIL +GC  +NK  + +  L  ++     FPD  +YN +++  CK G+++    +L  
Sbjct: 214 TFNILIYGCCIENKLSEAI-GLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLD 272

Query: 78  ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137
           +  +   P+  TF  L+ G C    + EAA +   +      PDV+TY  LI GLC+ G 
Sbjct: 273 MKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGK 332

Query: 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD 197
              A  L +EM N      +   PD +TY+T+ +G        K  EL  KM+ + + P+
Sbjct: 333 IDEAFRLKDEMEN------LKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPN 386

Query: 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257
            VTY  +++ +      + A     +M + G  P+ VTFN ++N  CK G++ EA R+++
Sbjct: 387 AVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMD 446

Query: 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK 317
            M + G++ ++   NT++   C   +++ A +L  S    G   D  SYG LI GY K+ 
Sbjct: 447 EMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDG 506

Query: 318 EIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   A+ L+ EM  K I P+++TYNT
Sbjct: 507 KSVEAMKLWDEMKEKEIIPSIITYNT 532



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 156/319 (48%), Gaps = 6/319 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++N++     K    D   +  +++   G  PD  T+N LIN +CK GR+S  F +
Sbjct: 385 PNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRM 444

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  + R     ++VT  +++  LC E ++ +A  L +     G   D  +Y TLI G  +
Sbjct: 445 MDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFK 504

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G ++ A+ L++EM     E  ++  P  ITY+T+  GLC  G  D++ +   ++ +  +
Sbjct: 505 DGKSVEAMKLWDEMK----EKEII--PSIITYNTMIGGLCHSGKTDQSIDKLNELLESGL 558

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TY ++I G+C      +A     +M+ +  +P++ T N+++  LC  G +D+A +
Sbjct: 559 VPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALK 618

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           L    I  G   DA  YNT++ G C   R   A +L   ME      D ++Y  +++   
Sbjct: 619 LFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALA 678

Query: 315 KNKEIEGALSLYSEMLSKG 333
               ++ A    S ++ +G
Sbjct: 679 DAGRMKEAEEFMSRIVEQG 697



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 120/266 (45%), Gaps = 29/266 (10%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            + L+  +    + P + TYN +I   C  G+       L  +L S   PD  T+ ++I 
Sbjct: 511 AMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIIL 570

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF 155
           G C E ++ +A     K+     KPD+FT   L+ GLC  G    AL LF    +     
Sbjct: 571 GYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAI 630

Query: 156 GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215
                 DA+TY+TI  GLCKE   ++A +L  +M+++ + PD  TY +++     A    
Sbjct: 631 ------DAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMK 684

Query: 216 EAKCLFIEMMDQG-----------------------VQPNVVTFNVIMNELCKNGKMDEA 252
           EA+     +++QG                         PN VTF+  +NELC  GK  +A
Sbjct: 685 EAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDA 744

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGF 278
             +++   Q G+    S Y +LM+G 
Sbjct: 745 MHMVQESTQKGITLHKSTYISLMEGL 770



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 133/258 (51%), Gaps = 9/258 (3%)

Query: 88  VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR---TGHTIVALNL 144
           V   + I    A +R   AA +F +++    KP++ T  TLIN L R        ++  +
Sbjct: 140 VILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAI 199

Query: 145 FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
           F ++     + GV  K +  T++ +  G C E  + +A  L  KMKD +  PD V+Y ++
Sbjct: 200 FSDVI----KLGV--KVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTI 253

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           +   C     NEA+ L ++M + G+ PN  TFN++++  CK G + EA+++++LM Q  V
Sbjct: 254 LDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNV 313

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            PD   YN L+ G C  G+++ A  L   ME+   + DV +Y  LING            
Sbjct: 314 LPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFE 373

Query: 325 LYSEMLSKGIRPTVVTYN 342
           L  +M  KG++P  VTYN
Sbjct: 374 LIDKMEGKGVKPNAVTYN 391



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 90/246 (36%), Gaps = 52/246 (21%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N + G L  +   D  +     L   GL PD  TYN +I  +C+ G+V   F  
Sbjct: 525 PSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQF 584

Query: 75  LGRILRSCFTPD-----------------------------------AVTFTSLIKGLCA 99
             ++++  F PD                                   AVT+ ++I GLC 
Sbjct: 585 HNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCK 644

Query: 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVV 158
           E R  EA  L  ++      PD +TY  +++ L   G    A      +   G  +   +
Sbjct: 645 EDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTI 704

Query: 159 C----------------KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202
                             P+++T+S   + LC +G    A  +  +   + I     TY 
Sbjct: 705 SLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTYI 764

Query: 203 SLIRGF 208
           SL+ G 
Sbjct: 765 SLMEGL 770


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 179/336 (53%), Gaps = 8/336 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           M+  H   P   S+NIL   L         L L   + + GL PD+ TYNIL   F  +G
Sbjct: 306 MMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLG 365

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
            ++  + ++ ++L     P+ VT+T LI G C    + EA  L+ ++ + G +  + + T
Sbjct: 366 LINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISST 425

Query: 127 TLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            L+  LC++    VA  LF EM ANG        +PD ITYST+  GLCK+G V +A  L
Sbjct: 426 VLLGSLCKSRQVDVAFKLFCEMEANG-------LRPDLITYSTLIHGLCKQGEVQQAILL 478

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
           + KM    I P+ + + +++ G C     ++A+  F  ++   +  +++ +N++++   K
Sbjct: 479 YEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIK 538

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            G   EA +L + + + G+ P    +N+LM GFC+  ++++A+ L  +++ +G   +  +
Sbjct: 539 RGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVT 598

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           Y  L+N YC+   ++  L L SEM +K I PT +TY
Sbjct: 599 YTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITY 634



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 172/361 (47%), Gaps = 29/361 (8%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P + ++NIL          +   ++ +++   G  P+L TY +LI   C++G V  
Sbjct: 345 HGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEE 404

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
              +   ++   F    ++ T L+  LC   ++  A  LF ++ A G +PD+ TY+TLI+
Sbjct: 405 ALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIH 464

Query: 131 GLCRTGHTIVALNLFEEMAN---------------GNGEFGVVCKP-------------- 161
           GLC+ G    A+ L+E+M +               G  E G + +               
Sbjct: 465 GLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSL 524

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           D I Y+ + DG  K G   +A +L+ ++ ++ I+P +VT+ SL+ GFC     ++A+ L 
Sbjct: 525 DIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLL 584

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
             +   G++PN VT+  +MN  C+ G M     LL  M    + P    Y  ++ G C  
Sbjct: 585 DTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQ 644

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            ++  + +L   M++ G   D  SY  +I  +CK +++  A  LY +ML   + PT VTY
Sbjct: 645 WKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTY 704

Query: 342 N 342
           N
Sbjct: 705 N 705



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 168/333 (50%), Gaps = 6/333 (1%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H     + S  +L G L K++  D    LF  + + GL PDL TY+ LI+  CK G V  
Sbjct: 415 HGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQ 474

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
             ++  ++  +   P+++   +++ GLC + +I +A   F  L       D+  Y  +I+
Sbjct: 475 AILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMID 534

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G  + G+T  A+ L++++    GE G+   P  +T++++  G C    + +A+ L   +K
Sbjct: 535 GYIKRGNTREAVKLYKQL----GEKGI--SPTIVTFNSLMYGFCINRKLSQARRLLDTIK 588

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
              + P+ VTYT+L+  +C   +      L  EM  + + P  +T+ V++  LCK  K+ 
Sbjct: 589 LHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQ 648

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           E+ +LLE M  +G+ PD   YNT++  FC    + +A +L+  M  +       +Y ILI
Sbjct: 649 ESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILI 708

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           NG+C   +++ A +L   + ++ +      Y T
Sbjct: 709 NGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTT 741



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 159/348 (45%), Gaps = 41/348 (11%)

Query: 31  KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF 90
           +H + +  ++  +   G     YT +I+++  C+  R     +         F P  V+F
Sbjct: 225 RHSNIMWDVYNEIKVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSF 284

Query: 91  TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150
            +++   C    +  A + F  +   G  PD ++Y  LI+GLC  G    AL+L  +M N
Sbjct: 285 NTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMEN 344

Query: 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
              E      PD +TY+ +  G    G ++ A  +  KM  +  NP++VTYT LI G C 
Sbjct: 345 HGLE------PDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQ 398

Query: 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
             +  EA  L+ EM+  G Q ++++  V++  LCK+ ++D A +L   M   G+RPD   
Sbjct: 399 IGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLIT 458

Query: 271 YNTLMDGFCLTGRVNRAKELFVSMESNGCM------------------------------ 300
           Y+TL+ G C  G V +A  L+  M SN  +                              
Sbjct: 459 YSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLI 518

Query: 301 -----RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
                 D+  Y I+I+GY K      A+ LY ++  KGI PT+VT+N+
Sbjct: 519 TSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNS 566



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 148/323 (45%), Gaps = 7/323 (2%)

Query: 14  PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P  +    IL G   K K     +  F  L +  L  D+  YNI+I+ + K G       
Sbjct: 489 PNSLIHGAILMGLCEKGKISQARM-YFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVK 547

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +  ++     +P  VTF SL+ G C   ++ +A  L   ++  G +P+  TYTTL+N  C
Sbjct: 548 LYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYC 607

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
             G+    L L  EM            P  ITY+ +  GLCK+  + ++ +L   M    
Sbjct: 608 EEGNMQSLLELLSEMK------AKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVG 661

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD V+Y ++I+ FC A D  +A  L+ +M+   ++P  VT+N+++N  C  G + +A 
Sbjct: 662 LTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDAD 721

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            LL  +    V  +   Y T++   C  G V++A   F  M   G    +  Y  +I   
Sbjct: 722 NLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRL 781

Query: 314 CKNKEIEGALSLYSEMLSKGIRP 336
           CK   +  A   +  MLS G+ P
Sbjct: 782 CKRCLVTEAKYFFCMMLSDGVCP 804



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 152/330 (46%), Gaps = 7/330 (2%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FDY++  + S   +  +NI+     K  +    + L+K+L   G+ P + T+N L+  FC
Sbjct: 514 FDYLITSNLSLDIIL-YNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFC 572

Query: 64  KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123
              ++S    +L  I      P+AVT+T+L+   C E  +     L ++++A    P   
Sbjct: 573 INRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHI 632

Query: 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183
           TYT +I GLC+      +  L E+M        V   PD ++Y+TI    CK   + KA 
Sbjct: 633 TYTVVIKGLCKQWKLQESCQLLEDMD------AVGLTPDQVSYNTIIQAFCKARDMRKAF 686

Query: 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243
           +L+ KM   N+ P  VTY  LI GFC   D  +A  L + + ++ V  N   +  I+   
Sbjct: 687 QLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAH 746

Query: 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
           C  G +D+A      M++ G       Y+ ++   C    V  AK  F  M S+G   D 
Sbjct: 747 CAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQ 806

Query: 304 FSYGILINGYCKNKEIEGALSLYSEMLSKG 333
             + +L+N + +   +     L +EM+  G
Sbjct: 807 DLFEVLLNAFHQCGHLNSEFELLAEMIKSG 836



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 144/290 (49%), Gaps = 9/290 (3%)

Query: 54  TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113
            +++L   + +   V     VL ++    F     T+ SL+  L   S IM    ++ ++
Sbjct: 181 VWDMLACAYSRSAMVHDALFVLVKMKDLNFIVSIQTYNSLLYNL-RHSNIM--WDVYNEI 237

Query: 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173
           +  G     +T + +++GLCR      A+  F++        G   +P  ++++TI    
Sbjct: 238 KVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTE------GKEFQPSVVSFNTIMSRY 291

Query: 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233
           CK GFVD AK  F  M    + PD  +Y  LI G C A    EA  L  +M + G++P++
Sbjct: 292 CKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDM 351

Query: 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293
           VT+N++       G ++ A  +++ M+  G  P+   Y  L+ G C  G V  A +L+  
Sbjct: 352 VTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKE 411

Query: 294 MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           M S+G    + S  +L+   CK+++++ A  L+ EM + G+RP ++TY+T
Sbjct: 412 MISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYST 461



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 32/210 (15%)

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL------------------- 204
           + +  +     +   V  A  + +KMKD N    + TY SL                   
Sbjct: 180 VVWDMLACAYSRSAMVHDALFVLVKMKDLNFIVSIQTYNSLLYNLRHSNIMWDVYNEIKV 239

Query: 205 -------------IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251
                        + G C  + + +A   F +   +  QP+VV+FN IM+  CK G +D 
Sbjct: 240 SGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDV 299

Query: 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311
           A     +M++ G+ PDA  YN L+ G C+ G +  A +L   ME++G   D+ +Y IL  
Sbjct: 300 AKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAK 359

Query: 312 GYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G+     I GA ++  +ML KG  P +VTY
Sbjct: 360 GFRLLGLINGAWNIIQKMLIKGPNPNLVTY 389


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 172/408 (42%), Gaps = 72/408 (17%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             ++  M+     PP   +F+I    L +    D  L++ + +   G  PD   Y  +I+
Sbjct: 156 LSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIH 215

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
             C  G V+    +L  +     + D  TF  ++ GLC   R+ EAA L  ++   GC P
Sbjct: 216 ALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVP 275

Query: 121 DVFTYTTLINGLC--------RT-----------------------GHTIVALNLFEEMA 149
           +  TY  L+ GLC        RT                       G    A  L+E M 
Sbjct: 276 NAITYGFLLKGLCLASQVEEARTMLGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMG 335

Query: 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209
           +        C PDA TYS +  GLCK G +  A +L  +M+D+   P +VTYT L+  FC
Sbjct: 336 SKG------CPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFC 389

Query: 210 YANDWNEAKCLF-----------------------------------IEMMDQGVQPNVV 234
               W+  + +                                     EM  QG +P++ 
Sbjct: 390 RNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDIC 449

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294
           T+N I+  LC N +M+EA  L E ++  GV  +A  YNTL+      G    A  L   M
Sbjct: 450 TYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDM 509

Query: 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             +GC  D+ SY  LI   C++  ++ ++ L SEM  KGI+P  V+YN
Sbjct: 510 VLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYN 557



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 165/361 (45%), Gaps = 38/361 (10%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRL-NSIGLFPDLYTYNILINCFCKMGRVSPGFV 73
           P   S+N +    A+   +  VLSL++R+ +   + P  +T++I     C++GR      
Sbjct: 134 PSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADEALT 193

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
           +L  + R    PD V + ++I  LCA+  + EAA L  ++   GC  DV T+  +++GLC
Sbjct: 194 MLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLC 253

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK---------- 183
             G    A  L + M          C P+AITY  +  GLC    V++A+          
Sbjct: 254 TLGRLREAARLVDRMMIRG------CVPNAITYGFLLKGLCLASQVEEARTMLGRVPELN 307

Query: 184 ---------------------ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222
                                EL+  M  +   PD  TY+ LI G C       A  L  
Sbjct: 308 VVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLR 367

Query: 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282
           EM D+G  P++VT+ ++++  C+NG  D    +LE+M   G+  +   YN ++   C   
Sbjct: 368 EMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDR 427

Query: 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           R++ A      M+S G   D+ +Y  +I   C N ++E A  L+  +L +G+    +TYN
Sbjct: 428 RMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYN 487

Query: 343 T 343
           T
Sbjct: 488 T 488



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 174/361 (48%), Gaps = 43/361 (11%)

Query: 17  VCSFNILFG-CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           V  FN + G CL   K  +    L++ + S G  PD +TY+ILI+  CK+GR+     +L
Sbjct: 308 VVLFNTVIGRCLLDGKLKEAA-ELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLL 366

Query: 76  GRILRSCFTPDAVTFTSLI---------------------KGL--------------CAE 100
             +    F P  VT+T L+                     KGL              C +
Sbjct: 367 REMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKD 426

Query: 101 SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160
            R+ +A     ++++ G KPD+ TY T+I  LC       A  LFE + +     GVV  
Sbjct: 427 RRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHE----GVVA- 481

Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
            +AITY+T+   L + G    A  L   M     + D+V+Y  LI+  C   + + +  L
Sbjct: 482 -NAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIML 540

Query: 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280
             EM ++G++PN V++N++++ELCK  ++ +A  L + M+   + PD   YNTL++G C 
Sbjct: 541 LSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCK 600

Query: 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
            G ++ A  L   + +     D+ +Y ILI+ +CK + +  A  L +  ++ GI P   T
Sbjct: 601 MGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERT 660

Query: 341 Y 341
           +
Sbjct: 661 W 661



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 147/301 (48%), Gaps = 6/301 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++ IL     +N  +D + ++ + ++  GL  +L  YN +I   CK  R+      
Sbjct: 376 PSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRF 435

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           +  +    + PD  T+ ++I  LC  +++ EA  LF  L   G   +  TY TLI+ L R
Sbjct: 436 MQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLR 495

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A++L  +M          C  D ++Y+ +   LC++G VD++  L  +M ++ I
Sbjct: 496 NGSWQDAISLANDMVLHG------CSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGI 549

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P+ V+Y  LI   C      +A  L  EM++Q + P++VT+N ++N LCK G M  A  
Sbjct: 550 KPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALN 609

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           LLE +    V  D   YN L+   C    ++ A  L     ++G   +  ++GI++  + 
Sbjct: 610 LLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWGIMVQNFV 669

Query: 315 K 315
           +
Sbjct: 670 R 670



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 114/258 (44%), Gaps = 38/258 (14%)

Query: 116 FGCKPDVFTYTTLINGLCRTG-HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174
           F   P   +Y T++    R   HT V L+L+  M + +        P   T+S     LC
Sbjct: 130 FAVSPSFRSYNTVLAAFARADCHTDV-LSLYRRMVHRDR-----VPPTTFTFSIAARALC 183

Query: 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234
           + G  D+A  +   M      PD V Y ++I   C     NEA  L  EM   G   +V 
Sbjct: 184 RLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVN 243

Query: 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT------------- 281
           TFN I++ LC  G++ EA+RL++ M+  G  P+A  Y  L+ G CL              
Sbjct: 244 TFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRV 303

Query: 282 ------------------GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323
                             G++  A EL+ +M S GC  D  +Y ILI+G CK   +  A+
Sbjct: 304 PELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAM 363

Query: 324 SLYSEMLSKGIRPTVVTY 341
            L  EM  KG  P++VTY
Sbjct: 364 KLLREMEDKGFAPSIVTY 381



 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 45/87 (51%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L   L K       L+L ++L++  +  D+ TYNILI+  CK   +    ++
Sbjct: 586 PDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASML 645

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAES 101
           L R + S  TP+  T+  +++    +S
Sbjct: 646 LNRAVTSGITPNERTWGIMVQNFVRKS 672


>gi|326529783|dbj|BAK04838.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 490

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 179/383 (46%), Gaps = 44/383 (11%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDT-------VLSLFKRLNSIG----LFPD 51
           +FD +LR  P P        LF  LA+ +            + LF R+        + PD
Sbjct: 40  LFDELLR-QPVPVSARPLGGLFSALARAQPSTACADGPALAIDLFNRMTRARRRRVIAPD 98

Query: 52  LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111
            YTYNILI+C  +  R   G    GR+L++  TPD +T++SL++  C   R  EA  L  
Sbjct: 99  TYTYNILIDCCHRACRPDLGPAFFGRLLKTGITPDVITYSSLLQCFCDMKRTEEALDLLL 158

Query: 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG-------------------- 151
             R  G  PD  +Y+ ++   C  G +  AL+L   MA                      
Sbjct: 159 H-RVSGDLPDAISYSVILKSFCDDGRSQCALDLLRMMAEKGAEHSPSVVSYNLVIHGFFK 217

Query: 152 NGEFGVVCK-----------PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200
            GE    C            PD +TY+++ + LCK   +DKA+ +   M   ++ PD VT
Sbjct: 218 EGEISKACHLFHGMIQQGYVPDVVTYNSVINALCKARAMDKAEVVLRSMVHNSVQPDAVT 277

Query: 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260
           Y SLI G+       E   L   M  QGV P++VT + +M+ LCK+GK+ EA  +     
Sbjct: 278 YNSLIHGYLILGQLKETFRLLKVMRSQGVMPSLVTCSSVMDYLCKHGKIKEAEEMFYSRA 337

Query: 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320
             G +PD  +Y+ ++ G+ + G + +  +L   M  +G + D+  + ILIN Y K   ++
Sbjct: 338 VNGRKPDIVLYSIMLHGYAIEGSLVKMIDLCEVMARDGVVPDLPCFNILINAYAKYGMMD 397

Query: 321 GALSLYSEMLSKGIRPTVVTYNT 343
            A+  + +ML +G++P   TY T
Sbjct: 398 VAMLFFEDMLKQGVKPNEFTYLT 420



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 136/283 (48%), Gaps = 8/283 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V S+N++     K         LF  +   G  PD+ TYN +IN  CK   +    VV
Sbjct: 203 PSVVSYNLVIHGFFKEGEISKACHLFHGMIQQGYVPDVVTYNSVINALCKARAMDKAEVV 262

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  ++ +   PDAVT+ SLI G     ++ E   L   +R+ G  P + T +++++ LC+
Sbjct: 263 LRSMVHNSVQPDAVTYNSLIHGYLILGQLKETFRLLKVMRSQGVMPSLVTCSSVMDYLCK 322

Query: 135 TGHTIVALNLFEEMA-NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
            G    A  +F   A NG        KPD + YS +  G   EG + K  +L   M  + 
Sbjct: 323 HGKIKEAEEMFYSRAVNGR-------KPDIVLYSIMLHGYAIEGSLVKMIDLCEVMARDG 375

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           + PD+  +  LI  +      + A   F +M+ QGV+PN  T+  +++  CK G+MD+A 
Sbjct: 376 VVPDLPCFNILINAYAKYGMMDVAMLFFEDMLKQGVKPNEFTYLTVISAFCKMGRMDDAM 435

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
                MI +GV  D  VY  +++G+   G   +A+E    M++
Sbjct: 436 EKFSEMIDMGVPLDTEVYMCMVEGYLNHGDSMKAEEFITKMKN 478



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 162/358 (45%), Gaps = 46/358 (12%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGF-V 73
           P   ++NIL  C  +    D   + F RL   G+ PD+ TY+ L+ CFC M R      +
Sbjct: 97  PDTYTYNILIDCCHRACRPDLGPAFFGRLLKTGITPDVITYSSLLQCFCDMKRTEEALDL 156

Query: 74  VLGRILRSCFTPDAVTFTSLIKGLCAESR------------------------------- 102
           +L R+  S   PDA++++ ++K  C + R                               
Sbjct: 157 LLHRV--SGDLPDAISYSVILKSFCDDGRSQCALDLLRMMAEKGAEHSPSVVSYNLVIHG 214

Query: 103 ------IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG 156
                 I +A  LF  +   G  PDV TY ++IN LC+      A  +   M + +    
Sbjct: 215 FFKEGEISKACHLFHGMIQQGYVPDVVTYNSVINALCKARAMDKAEVVLRSMVHNS---- 270

Query: 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE 216
              +PDA+TY+++  G    G + +   L   M+ + + P +VT +S++   C      E
Sbjct: 271 --VQPDAVTYNSLIHGYLILGQLKETFRLLKVMRSQGVMPSLVTCSSVMDYLCKHGKIKE 328

Query: 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
           A+ +F      G +P++V ++++++     G + +   L E+M + GV PD   +N L++
Sbjct: 329 AEEMFYSRAVNGRKPDIVLYSIMLHGYAIEGSLVKMIDLCEVMARDGVVPDLPCFNILIN 388

Query: 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334
            +   G ++ A   F  M   G   + F+Y  +I+ +CK   ++ A+  +SEM+  G+
Sbjct: 389 AYAKYGMMDVAMLFFEDMLKQGVKPNEFTYLTVISAFCKMGRMDDAMEKFSEMIDMGV 446



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 149/323 (46%), Gaps = 8/323 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYNILINCFCKMGRVSPGF 72
           P   S++++      +      L L + +   G    P + +YN++I+ F K G +S   
Sbjct: 166 PDAISYSVILKSFCDDGRSQCALDLLRMMAEKGAEHSPSVVSYNLVIHGFFKEGEISKAC 225

Query: 73  VVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132
            +   +++  + PD VT+ S+I  LC    + +A  +   +     +PD  TY +LI+G 
Sbjct: 226 HLFHGMIQQGYVPDVVTYNSVINALCKARAMDKAEVVLRSMVHNSVQPDAVTYNSLIHGY 285

Query: 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192
              G       L + M +     GV+  P  +T S++ D LCK G + +A+E+F      
Sbjct: 286 LILGQLKETFRLLKVMRSQ----GVM--PSLVTCSSVMDYLCKHGKIKEAEEMFYSRAVN 339

Query: 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
              PD+V Y+ ++ G+       +   L   M   GV P++  FN+++N   K G MD A
Sbjct: 340 GRKPDIVLYSIMLHGYAIEGSLVKMIDLCEVMARDGVVPDLPCFNILINAYAKYGMMDVA 399

Query: 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312
               E M++ GV+P+   Y T++  FC  GR++ A E F  M   G   D   Y  ++ G
Sbjct: 400 MLFFEDMLKQGVKPNEFTYLTVISAFCKMGRMDDAMEKFSEMIDMGVPLDTEVYMCMVEG 459

Query: 313 YCKNKEIEGALSLYSEMLSKGIR 335
           Y  + +   A    ++M +  I 
Sbjct: 460 YLNHGDSMKAEEFITKMKNMDIH 482


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/388 (29%), Positives = 174/388 (44%), Gaps = 68/388 (17%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN +      +      + +F  +   G  PD+++Y+IL++  CK G V  G+ +L  + 
Sbjct: 286 FNAVIHGFCHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMA 345

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK-------------------- 119
           R+  TP+ V+++SL+ GLC   R+  A  LF +L+  G K                    
Sbjct: 346 RNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLE 405

Query: 120 ---------------PDVFTYTTLINGLCRTGHTIVALNLFEEMANGN------------ 152
                          PD + Y++LI   CR      AL +FE M +              
Sbjct: 406 ICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILV 465

Query: 153 ---------GE----------FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                    GE          FGVV  P   TY  I  GLCK    +    +F  M    
Sbjct: 466 HGFSNEGLIGEAFLFLDKVRQFGVV--PSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRG 523

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD V Y+ +I GF  A D  EA  L+ +M+D+G +PN+ T+  ++N LC + K+ E  
Sbjct: 524 YVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVM 583

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + MI  G+ PD  +Y +L+  +C    +  A E+F  ME+ G   D F Y  LI G+
Sbjct: 584 TLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGF 643

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            K   ++GA     EM++KG+ PTVVTY
Sbjct: 644 SKVLAMDGAQLFMEEMMNKGLTPTVVTY 671



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 156/329 (47%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++      L   K   +  +  + L   G   + Y +N +I+ FC  G+V     V
Sbjct: 246 PNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEV 305

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +  F PD  +++ L+ GLC +  ++    +  ++   G  P++ +Y++L++GLCR
Sbjct: 306 FDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCR 365

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +A  LF+ + +         K D I YS +  G C+   ++   +L+  M   N 
Sbjct: 366 AGRVELAFELFKRLKDQG------FKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNF 419

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   Y+SLI  +C      EA  +F  M+  G+ PNVVT  ++++     G + EA  
Sbjct: 420 VPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFL 479

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ + Q GV P    Y  ++ G C   + N    +F  M   G + D   Y I+I+G+ 
Sbjct: 480 FLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFV 539

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  +++ A  LY +M+ +G +P + TY +
Sbjct: 540 KALDLQEAFRLYYKMVDEGTKPNIFTYTS 568



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 11/317 (3%)

Query: 22  ILFGCLAKNKHYDTVL--SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +L GC    +H D  +   L+  +      PD Y Y+ LI  +C+  ++     V   ++
Sbjct: 394 VLHGCC---QHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMV 450

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ VT T L+ G   E  I EA     K+R FG  P + TY  +I+GLC+     
Sbjct: 451 SDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPN 510

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
               +F +M     + G V  PD + YS I DG  K   + +A  L+ KM DE   P++ 
Sbjct: 511 DMWGIFADMI----KRGYV--PDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIF 564

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TYTSLI G C+ +   E   LF  M+ +G+ P+ + +  ++   CK   M  A  +   M
Sbjct: 565 TYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREM 624

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              G+  D+ VY  L+ GF     ++ A+     M + G    V +Y  LI GY K  + 
Sbjct: 625 ETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDE 684

Query: 320 EGALSLYSEMLSKGIRP 336
           + A+++Y+ ML  GI P
Sbjct: 685 KKAMAMYNSMLQAGIAP 701



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 124/256 (48%), Gaps = 6/256 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +  IL    +             ++   G+ P L TY ++I+  CK+ + +  + +
Sbjct: 456 PNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGI 515

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++  + PD V ++ +I G      + EA  L+ K+   G KP++FTYT+LINGLC 
Sbjct: 516 FADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCH 575

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  + LF+ M       G    PD I Y+++    CK   +  A E+F +M+ E +
Sbjct: 576 DDKLPEVMTLFKHM------IGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGL 629

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + D   YT LI GF      + A+    EMM++G+ P VVT+  ++    K G   +A  
Sbjct: 630 SADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMA 689

Query: 255 LLELMIQIGVRPDASV 270
           +   M+Q G+ PDA +
Sbjct: 690 MYNSMLQAGIAPDAKL 705



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 6/293 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   +++ L     +++     L +F+ + S G+ P++ T  IL++ F   G +  
Sbjct: 417 HNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGE 476

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            F+ L ++ +    P   T+  +I GLC  ++  +   +F  +   G  PD   Y+ +I+
Sbjct: 477 AFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIID 536

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G  +      A  L+ +M +         KP+  TY+++ +GLC +  + +   LF  M 
Sbjct: 537 GFVKALDLQEAFRLYYKMVDEG------TKPNIFTYTSLINGLCHDDKLPEVMTLFKHMI 590

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            E + PD + YTSLI  +C  ++   A  +F EM  +G+  +   +  ++    K   MD
Sbjct: 591 GEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMD 650

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            A   +E M+  G+ P    Y  L+ G+   G   +A  ++ SM   G   D 
Sbjct: 651 GAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAGIAPDA 703



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD--QGVQPNVVTFNVI 239
           A+ LF  MK    +P+V +Y+ L+  + +       + L +      +GV+PN  T+   
Sbjct: 195 ARSLFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALELLSEMEVEGVRPNAATYATY 254

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           +  LC   ++  A   L+++ Q G   +   +N ++ GFC  G+V++A E+F  M+  G 
Sbjct: 255 LYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGF 314

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           + DV SY IL++G CK  ++     +  EM   GI P +V+Y++
Sbjct: 315 VPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSS 358



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 192 ENINPDVVTYTSLIRGFCYAND----WNEAKCLFIEMMDQGVQP-NVVTFNVIMNELCKN 246
           E + P+  TY + + G C+A      WN     F++M+ Q   P N   FN +++  C +
Sbjct: 242 EGVRPNAATYATYLYGLCHAKQVKSAWN-----FLQMLCQRGYPCNNYCFNAVIHGFCHD 296

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306
           G++ +A  + + M + G  PD   Y+ L+DG C  G V     + V M  NG   ++ SY
Sbjct: 297 GQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSY 356

Query: 307 GILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
             L++G C+   +E A  L+  +  +G +   + Y+
Sbjct: 357 SSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYS 392


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 172/367 (46%), Gaps = 43/367 (11%)

Query: 13  SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF----------------------- 49
           S P V SFNIL    A    ++ V +L + + S G+                        
Sbjct: 124 SEPNVSSFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAV 183

Query: 50  ------------PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97
                       P L+TY +L++  CK  +V     V   ++R  + PD + ++SLI GL
Sbjct: 184 SYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGL 243

Query: 98  CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157
               R+ EA  L   + A G  P    YT+++ GLC+ G    A+   +EM        V
Sbjct: 244 SKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRV 303

Query: 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217
                  TYS I  G    G V+KA  +  +M D +  PD ++YT  I          EA
Sbjct: 304 ------DTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEA 357

Query: 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277
           + +F  M+++G +P++ T+ +I++  CK G M  A+ +L LM +  V+P+  +Y  +MDG
Sbjct: 358 EKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDG 417

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG--IR 335
           F  + R+  A EL+  +  +G +    +Y  +IN  CK K+++ AL L  EM  +   + 
Sbjct: 418 FVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELE 477

Query: 336 PTVVTYN 342
           P++VTY+
Sbjct: 478 PSIVTYS 484



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 156/366 (42%), Gaps = 43/366 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++ +L   L K    +    +F+ +   G  PD+  Y+ LI+   K GRV     +
Sbjct: 196 PTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKL 255

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKL--------------------- 113
           +  ++     P AV +TS++ GLC   RI EA     ++                     
Sbjct: 256 VDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIG 315

Query: 114 -----RAFG---------CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159
                +AF          C PD  +YT  I  L   G    A  +FE M          C
Sbjct: 316 MGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKG------C 369

Query: 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
           KPD  TY  I D  CKEG +  A  +   M    + P+   YT ++ GF  ++   EA  
Sbjct: 370 KPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALE 429

Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG--VRPDASVYNTLMDG 277
           L+  ++  G+ P+ VT+N ++N LCK  KMDEA  LL  M +    + P    Y+ ++ G
Sbjct: 430 LYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHG 489

Query: 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337
               G   RA +L   M  NG + D F+Y  LI       ++  A+ L  EML  GI P 
Sbjct: 490 LGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPD 549

Query: 338 VVTYNT 343
             TY T
Sbjct: 550 DHTYGT 555



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 162/343 (47%), Gaps = 10/343 (2%)

Query: 3   IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF 62
           + D M+   P PP   ++  +   L K       +   + +    L P + TY+ ++  +
Sbjct: 255 LVDLMVARGP-PPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGY 313

Query: 63  CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122
             MG+V   F V+  +      PD +++T  I+ L +  R  EA  +F  +   GCKPD+
Sbjct: 314 IGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDM 373

Query: 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182
            TY  +I+  C+ G    A ++   M           KP+   Y+ I DG  K   +++A
Sbjct: 374 HTYGIIIDNFCKEGSMAAATHVLRLMDKA------AVKPNRYIYTMIMDGFVKSSRLEEA 427

Query: 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM--DQGVQPNVVTFNVIM 240
            EL+ ++  + I P  VTY ++I   C     +EA  L  EM    + ++P++VT+++I+
Sbjct: 428 LELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMII 487

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM 300
           + L K G  + A  LL  MI  GV PD   Y +L+      G+V+RA EL   M   G  
Sbjct: 488 HGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIF 547

Query: 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            D  +YG L+   C++ +++ A  L  EM+  G  P   T+  
Sbjct: 548 PDDHTYGTLVQILCRS-DVDAAWDLLQEMMRNGHTPNEFTFKA 589



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 130/266 (48%), Gaps = 5/266 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   S+ +    L      +    +F+ +   G  PD++TY I+I+ FCK G ++    V
Sbjct: 336 PDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHV 395

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L  + ++   P+   +T ++ G    SR+ EA  L+ ++   G  P   TY T+IN LC+
Sbjct: 396 LRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCK 455

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                 AL L  EM     E     +P  +TYS I  GL K G  ++A +L  +M D  +
Sbjct: 456 LKKMDEALELLREMQRRKEEL----EPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGV 511

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD  TYTSLI+    A   + A  L  EM+  G+ P+  T+  ++  LC++  +D A  
Sbjct: 512 IPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRS-DVDAAWD 570

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCL 280
           LL+ M++ G  P+   +  +  GF L
Sbjct: 571 LLQEMMRNGHTPNEFTFKAVEKGFRL 596



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 9/226 (3%)

Query: 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176
           G    +FT  +L+  L R GH   AL  F+           + +P+  +++ +  G    
Sbjct: 91  GFSHTLFTRNSLLLALVRGGHLSDALGFFQ---------SSISEPNVSSFNILLRGFAAR 141

Query: 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF 236
              +    L  +MK   I  +  T+  ++   C   D ++A   F  +     +P + T+
Sbjct: 142 DDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTY 201

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            V+++ LCK  K++ A  + E MI+ G +PD   Y++L+DG    GRV+ A++L   M +
Sbjct: 202 TVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVA 261

Query: 297 NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
            G      +Y  ++ G CK   I+ A+    EM  + +RP V TY+
Sbjct: 262 RGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYS 307


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 157/327 (48%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  + IL     +N   D    +F R++ +GL  + Y Y I+IN F K G    GF +
Sbjct: 140 PNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++      P+  T+ SLI   C + ++  A  +F ++   G   +  TY  LI GLCR
Sbjct: 200 YQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCR 259

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L E M   +        P   T++ + DGLC  G +DKA     K+K   +
Sbjct: 260 KGQVSKAEGLLERMKRAH------INPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGL 313

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +VTY  LI GF    + +    L  EM D+G+ P+ VT+ ++MN   ++  +++A  
Sbjct: 314 CPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYE 373

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +  LM +IG+ PD   Y  L+ G C+ G +  A +L+ SM       +   Y  +INGYC
Sbjct: 374 MFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYC 433

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K      AL    EM+  G+ P V +Y
Sbjct: 434 KECNSYKALKFLEEMVKNGVTPNVASY 460



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 166/317 (52%), Gaps = 6/317 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           + I+     K  +      L++++  +G+ P+LYTYN LI  +C+ G++S  F V   I 
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEIS 239

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           +     +AVT+  LI GLC + ++ +A  L  +++     P   T+  L++GLC TG   
Sbjct: 240 KRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLD 299

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL+  E++     +   +C P  +TY+ +  G  K G      EL  +M+D  I+P  V
Sbjct: 300 KALSYLEKL-----KLIGLC-PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKV 353

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TYT L+  F  ++D  +A  +F  M   G+ P+  T+ V+++ LC  G M EAS+L + M
Sbjct: 354 TYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSM 413

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           +++ ++P+  +YNT+++G+C      +A +    M  NG   +V SY   I   CK+ + 
Sbjct: 414 VEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKS 473

Query: 320 EGALSLYSEMLSKGIRP 336
             A  L  EM   G++P
Sbjct: 474 IEAKRLLKEMTEAGLKP 490



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V SF I      +N +      L  ++ ++G+ P+++ Y ILI   C+ G +    V+  
Sbjct: 107 VYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFS 166

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R+       +   +T +I G   +    +   L+ K++  G  P+++TY +LI   CR G
Sbjct: 167 RMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDG 226

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
              +A  +F+E++    + GV C  +A+TY+ +  GLC++G V KA+ L  +MK  +INP
Sbjct: 227 KLSLAFKVFDEIS----KRGVAC--NAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINP 280

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
              T+  L+ G C     ++A     ++   G+ P +VT+N++++   K G     S L+
Sbjct: 281 TTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELV 340

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M   G+ P    Y  LM+ F  +  + +A E+F  M+  G + D  +YG+LI+G C  
Sbjct: 341 REMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIK 400

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  A  LY  M+   ++P  V YNT
Sbjct: 401 GNMVEASKLYKSMVEMHLQPNDVIYNT 427



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 134/287 (46%), Gaps = 33/287 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     ++        +F  ++  G+  +  TYNILI   C+ G+VS    +
Sbjct: 210 PNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGL 269

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+ R+   P   TF  L+ GLC   ++ +A +   KL+  G  P + TY  LI+G  +
Sbjct: 270 LERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSK 329

Query: 135 TGHTIVALNLFEEMANGN-------------------------------GEFGVVCKPDA 163
            G++ V   L  EM +                                    G+V  PD 
Sbjct: 330 VGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLV--PDQ 387

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
            TY  +  GLC +G + +A +L+  M + ++ P+ V Y ++I G+C   +  +A     E
Sbjct: 388 HTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEE 447

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
           M+  GV PNV ++   +  LCK+GK  EA RLL+ M + G++P  S+
Sbjct: 448 MVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPESL 494



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 8/244 (3%)

Query: 100 ESRIMEAAALFTKLRAF-GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158
           +S+++E +    KL    G  P  F++   ++ L ++G+       F E   G  +F   
Sbjct: 50  QSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYL-GRTQF--- 105

Query: 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218
              D  ++       C+ G V K  EL  +M+   ++P+V  YT LI   C   D ++AK
Sbjct: 106 ---DVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAK 162

Query: 219 CLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278
            +F  M D G+  N   + +++N   K G   +   L + M  +GV P+   YN+L+  +
Sbjct: 163 VMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEY 222

Query: 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338
           C  G+++ A ++F  +   G   +  +Y ILI G C+  ++  A  L   M    I PT 
Sbjct: 223 CRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTT 282

Query: 339 VTYN 342
            T+N
Sbjct: 283 RTFN 286



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           DA+  ++    L ++  +D  K + LK      +P   ++ + +     + + +     F
Sbjct: 42  DAVINASFQSQLLEQS-LDSFKLMVLK----GHSPSSFSFNNALDLLAKSGNLDRTWGFF 96

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            E + +  Q +V +F + +   C+NG + +   LL  M  +GV P+  +Y  L++  C  
Sbjct: 97  TEYLGR-TQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRN 155

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G +++AK +F  M+  G   + + Y I+ING+ K    +    LY +M   G+ P + TY
Sbjct: 156 GDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTY 215

Query: 342 NT 343
           N+
Sbjct: 216 NS 217


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 185/379 (48%), Gaps = 50/379 (13%)

Query: 4   FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63
           FD M+R  PSP  V +F+ L     K    D   SL+  +   G+ PDL  Y+ILIN   
Sbjct: 263 FDMMVRSGPSPNLV-TFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLF 321

Query: 64  KMGRVSPG-------------------------FVVLG----------RILRSCFTPDAV 88
           + G++  G                         +V +G          R+L+   +P+ V
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 89  TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148
           T++ LI GLC   R++EA  +F ++   G +P V TY++LI+G C++          E +
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKS----------ENL 431

Query: 149 ANGNGEFGVVCK----PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204
            +G G +G++ +    PD +  S + +GL ++G +D+A   F +     +  +   + +L
Sbjct: 432 RDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNAL 491

Query: 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV 264
           I G        +   ++I M    V P+VVT+ V++  L + G++DEA  L   +++ G 
Sbjct: 492 IDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGF 551

Query: 265 RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324
            PD  +Y TL+DGFC         ++F  M+SNG   D+  Y +LIN + +   +E  L 
Sbjct: 552 SPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLE 611

Query: 325 LYSEMLSKGIRPTVVTYNT 343
           L  E++  G+ P +VTYNT
Sbjct: 612 LLREIIKYGLEPDIVTYNT 630



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 170/338 (50%), Gaps = 33/338 (9%)

Query: 36  VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95
            + ++ R+   G+ P++ TY+ILIN  C+ GRV     V G+IL+    P  +T++SLI 
Sbjct: 364 AIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLID 423

Query: 96  GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN------------ 143
           G C    + +   L+  +   G  PDV   + LINGL R G    AL             
Sbjct: 424 GFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTL 483

Query: 144 ---LFEEMANG----------------NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184
              LF  + +G                 G + V+  PD +TY+ +  GL ++G +D+A  
Sbjct: 484 NNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVI--PDVVTYTVLVKGLAEQGRLDEALA 541

Query: 185 LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244
           LF ++  +  +PD + Y +LI GFC   D      +F  M   G+ P++  +NV++N   
Sbjct: 542 LFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFF 601

Query: 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF 304
           + G ++    LL  +I+ G+ PD   YNT++ G+C     ++A +LF  ++      +  
Sbjct: 602 REGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAI 661

Query: 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           ++ ILI+ YCK+  ++ A+ ++S ML +G  P ++TY+
Sbjct: 662 TFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYS 699



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 172/342 (50%), Gaps = 9/342 (2%)

Query: 1   FCIFDYMLRM-HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILI 59
           F ++  MLR  H     VCS  +L   L++    D  L  F +    GL  + Y +N LI
Sbjct: 435 FGLYGIMLRKGHVPDVVVCS--MLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALI 492

Query: 60  NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119
           +   ++ R   G  +   +      PD VT+T L+KGL  + R+ EA ALF +L   G  
Sbjct: 493 DGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFS 552

Query: 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179
           PD   Y TLI+G C+       L +F+ M + NG F     PD   Y+ + +   +EG V
Sbjct: 553 PDHIIYCTLIDGFCKKRDPATGLQIFKLMQS-NGIF-----PDICIYNVLINMFFREGCV 606

Query: 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239
           +   EL  ++    + PD+VTY ++I G+C    +++A  LF  +     QPN +TF ++
Sbjct: 607 ENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTIL 666

Query: 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299
           ++  CK+G+MD+A  +   M++ G  P+   Y+ L+DG+  T     A EL+  M  +  
Sbjct: 667 IDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRV 726

Query: 300 MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             ++ SY ILI+G CK   +E A   +   + + + P V+ Y
Sbjct: 727 SPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAY 768



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 164/329 (49%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P +   N +   L            F  +   G  P+L T++ LIN +CK  R+   F +
Sbjct: 238 PKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSL 297

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              ++     PD V ++ LI GL    ++ E  +LF+   A G K DV  ++++++   R
Sbjct: 298 YNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVR 357

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A+ ++  M            P+ +TYS + +GLC+ G V +A  +F ++  + +
Sbjct: 358 VGDLGKAIEVYTRMLKEG------ISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGL 411

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P V+TY+SLI GFC + +  +   L+  M+ +G  P+VV  ++++N L + G MDEA R
Sbjct: 412 EPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALR 471

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
                ++ G+  +  ++N L+DG     R     ++++ M     + DV +Y +L+ G  
Sbjct: 472 FFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLA 531

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +   ++ AL+L+ ++L KG  P  + Y T
Sbjct: 532 EQGRLDEALALFFQLLKKGFSPDHIIYCT 560



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 147/296 (49%), Gaps = 6/296 (2%)

Query: 7   MLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66
           ++ M+   P V ++ +L   LA+    D  L+LF +L   G  PD   Y  LI+ FCK  
Sbjct: 510 LMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKR 569

Query: 67  RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126
             + G  +   +  +   PD   +  LI     E  +     L  ++  +G +PD+ TY 
Sbjct: 570 DPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYN 629

Query: 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186
           T+I G C       A+ LFE +  G        +P+AIT++ + D  CK+G +D A  +F
Sbjct: 630 TMICGYCSLKIFSKAIKLFEVLKCGR------TQPNAITFTILIDAYCKDGRMDDAMLIF 683

Query: 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246
             M +    P+++TY+ LI G+    +   A  L+ +M+   V PN+V+++++++ LCK 
Sbjct: 684 SSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKK 743

Query: 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
           G M+EAS   +  I   + PD   Y  L+ G+C  GR+  A  L+  M  NG M D
Sbjct: 744 GLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPD 799



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 139/276 (50%), Gaps = 7/276 (2%)

Query: 1   FCIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60
             +F  +L+   SP  +    ++ G   K +   T L +FK + S G+FPD+  YN+LIN
Sbjct: 540 LALFFQLLKKGFSPDHIIYCTLIDG-FCKKRDPATGLQIFKLMQSNGIFPDICIYNVLIN 598

Query: 61  CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP 120
            F + G V     +L  I++    PD VT+ ++I G C+     +A  LF  L+    +P
Sbjct: 599 MFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQP 658

Query: 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180
           +  T+T LI+  C+ G    A+ +F  M     E      P+ +TYS + DG  K    +
Sbjct: 659 NAITFTILIDAYCKDGRMDDAMLIFSSMLERGPE------PNILTYSCLIDGYFKTENTE 712

Query: 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240
            A EL+ KM  + ++P++V+Y+ LI G C      EA   F   + + + P+V+ + +++
Sbjct: 713 SAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILI 772

Query: 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276
              CK G++ EA  L + M+  G+ PD  +   L +
Sbjct: 773 RGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAE 808



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 166/346 (47%), Gaps = 31/346 (8%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYT------------------YNI 57
           PV SF  +   L +++ +D    +F R+  +G F +L                    Y+ 
Sbjct: 88  PVQSFCGIAHVLLRHRMFDPATRVFDRM--VGQFGNLEVLGEFHGSFRNYGSNPSTVYSF 145

Query: 58  LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
           L++C+C+ G V         + +   +      + ++  L    RI      + ++    
Sbjct: 146 LLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEM---- 201

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
           CK  +  Y  + N   + G     LN    +     E G+V  P  +  + I  GLC   
Sbjct: 202 CK-GLGVYEFVFNSFLKRGEVEKGLNFHRALV----ERGLV--PKIVDCNKILKGLCMGN 254

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
            +  A + F  M     +P++VT+++LI  +C     +EA  L+  M+++G+ P++V ++
Sbjct: 255 QIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYS 314

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297
           +++N L + GK++E + L  + +  GV+ D  +++++MD +   G + +A E++  M   
Sbjct: 315 ILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE 374

Query: 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           G   +V +Y ILING C+N  +  A  ++ ++L +G+ P+V+TY++
Sbjct: 375 GISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSS 420



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 147/327 (44%), Gaps = 15/327 (4%)

Query: 16  PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVL 75
           P   ++ L  C  +N   D  +  F  ++ +G+    Y  + +++      R+    V+L
Sbjct: 139 PSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRID---VIL 195

Query: 76  GRILRSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133
                 C         F S +K    E  +    AL  +    G  P +     ++ GLC
Sbjct: 196 ENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVER----GLVPKIVDCNKILKGLC 251

Query: 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                 VA + F+ M            P+ +T+ST+ +  CKE  +D+A  L+  M ++ 
Sbjct: 252 MGNQIGVASDFFDMMVRSGP------SPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKG 305

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
           I PD+V Y+ LI G   A    E   LF   + +GV+ +VV F+ IM+   + G + +A 
Sbjct: 306 IVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAI 365

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            +   M++ G+ P+   Y+ L++G C  GRV  A  +F  +   G    V +Y  LI+G+
Sbjct: 366 EVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGF 425

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVT 340
           CK++ +     LY  ML KG  P VV 
Sbjct: 426 CKSENLRDGFGLYGIMLRKGHVPDVVV 452


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 171/377 (45%), Gaps = 54/377 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +F+IL   L K+ +    L LF  +   G+ PD +TY ++I+  C+  RV   + +
Sbjct: 194 PNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRL 253

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++  S   PD VT  +L+ G C   R+ EA +L       G   DV  Y+ LI GL R
Sbjct: 254 FDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFR 313

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                    L+ +M   N       KPD   Y+ +  GL + G V  A EL  +M +  +
Sbjct: 314 AKRYEDVQLLYRKMIEDN------VKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGV 367

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD V Y  LI+GFC     +EA+ L +E+      PNV T++++++ +C+NG   +A  
Sbjct: 368 VPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQE 427

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME------------------- 295
           +   M ++G  P A  +N+L+DG C TG++ +A  LF  ME                   
Sbjct: 428 IFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVL 487

Query: 296 -----------------------------SNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
                                         +G    +++Y IL+NG+CK     GA  L+
Sbjct: 488 DSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLF 547

Query: 327 SEMLSKGIRPTVVTYNT 343
            EM  KG+ P  VTY T
Sbjct: 548 REMQFKGLSPDTVTYGT 564



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 168/325 (51%), Gaps = 6/325 (1%)

Query: 19  SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78
           +F +L     K    D  +  F  +      PD+YTYN++++   +   +     V  R+
Sbjct: 128 AFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRM 187

Query: 79  LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138
           ++    P+  TF+ LI GLC    + +A  LF ++   G  PD FTY  +I+GLCR+   
Sbjct: 188 MKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRV 247

Query: 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198
             A  LF++M +     GV   PD +T + + +G C    VD+A  L    + +    DV
Sbjct: 248 DDAYRLFDKMKDS----GV--GPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDV 301

Query: 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258
             Y+ LIRG   A  + + + L+ +M++  V+P+V  + ++M  L + GK+ +A  LL  
Sbjct: 302 RGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNE 361

Query: 259 MIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318
           M + GV PD   YN L+ GFC  G ++ A+ L + +  + C  +V +Y ILI+G C+N  
Sbjct: 362 MTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGL 421

Query: 319 IEGALSLYSEMLSKGIRPTVVTYNT 343
              A  +++EM   G  P+ VT+N+
Sbjct: 422 TRDAQEIFNEMEKLGCYPSAVTFNS 446



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 165/333 (49%), Gaps = 22/333 (6%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V  ++ L   L + K Y+ V  L++++    + PD+Y Y I++    + G+V     +L 
Sbjct: 301 VRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLN 360

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
            +  S   PD V +  LIKG C    + EA +L  ++    C P+V TY+ LI+G+CR G
Sbjct: 361 EMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNG 420

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
            T  A  +F EM        + C P A+T++++ DGLCK G ++KA  LF KM+    NP
Sbjct: 421 LTRDAQEIFNEMEK------LGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGR-NP 473

Query: 197 --------------DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242
                         D  +   ++   C +   ++A  + +++ D G  P + T+N+++N 
Sbjct: 474 SLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNG 533

Query: 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302
            CK G  + A +L   M   G+ PD   Y TL++G     R   A ++F  ME NGC  D
Sbjct: 534 FCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPD 593

Query: 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKGIR 335
              Y  ++   C+  E+  A SL+ + L + IR
Sbjct: 594 AAVYRTMMTWMCRRMELPRAFSLWLKYL-RNIR 625



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 165/377 (43%), Gaps = 54/377 (14%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++ ++   L ++K  D    LF ++   G+ PD  T N L+N FC + RV   F +
Sbjct: 229 PDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSL 288

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L    +  +  D   ++ LI+GL    R  +   L+ K+     KPDV+ YT ++ GL  
Sbjct: 289 LRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAE 348

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    AL L  EM     E GVV  PD + Y+ +  G C  G + +A+ L L++   + 
Sbjct: 349 AGKVRDALELLNEMT----ESGVV--PDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDC 402

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS- 253
            P+V TY+ LI G C      +A+ +F EM   G  P+ VTFN +++ LCK G++++A  
Sbjct: 403 FPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHL 462

Query: 254 -----------------------------------------------RLLELMIQIGVRP 266
                                                          R+L  +   G  P
Sbjct: 463 LFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAP 522

Query: 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326
               YN L++GFC  G  N A +LF  M+  G   D  +YG LING  + +  E A  ++
Sbjct: 523 GIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVF 582

Query: 327 SEMLSKGIRPTVVTYNT 343
            +M   G  P    Y T
Sbjct: 583 DQMEKNGCTPDAAVYRT 599



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 155/323 (47%), Gaps = 10/323 (3%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  + I+   LA+       L L   +   G+ PD   YN+LI  FC MG +S    +
Sbjct: 334 PDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSL 393

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              I R    P+  T++ LI G+C      +A  +F ++   GC P   T+ +LI+GLC+
Sbjct: 394 QLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCK 453

Query: 135 TGHTIVALNLFEEMANGNG-------EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           TG    A  LF +M  G           G     D+ +   + + LC  G + KA  + +
Sbjct: 454 TGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILM 513

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           ++ D    P + TY  L+ GFC   ++N A  LF EM  +G+ P+ VT+  ++N L +  
Sbjct: 514 QLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQ 573

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
           + ++A ++ + M + G  PDA+VY T+M   C    + RA  L++    N  +R      
Sbjct: 574 REEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRN--IRSQEDEA 631

Query: 308 I-LINGYCKNKEIEGALSLYSEM 329
           I  I GY + +E+E A+    EM
Sbjct: 632 IKAIEGYFEKQEVEKAVRGLLEM 654



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 6/229 (2%)

Query: 113 LRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
           L+  G K     +  LI    + G T  A+  F  M + +      C PD  TY+ I D 
Sbjct: 117 LKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFD------CTPDVYTYNMILDV 170

Query: 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232
           L ++ F+  A  ++ +M   N  P+V T++ LI G C + +  +A  LF EM  +G+ P+
Sbjct: 171 LIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPD 230

Query: 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292
             T+ V+++ LC++ ++D+A RL + M   GV PD    N L++GFC+  RV+ A  L  
Sbjct: 231 AFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLR 290

Query: 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
             E +G + DV  Y  LI G  + K  E    LY +M+   ++P V  Y
Sbjct: 291 LFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLY 339



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 126/299 (42%), Gaps = 20/299 (6%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P V +++IL   + +N        +F  +  +G +P   T+N LI+  CK G++  
Sbjct: 400 HDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEK 459

Query: 71  GFVV-----LGR----ILRSCFTP----DAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117
             ++     +GR     LR    P    D+ +   +++ LC    I +A  +  +L   G
Sbjct: 460 AHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSG 519

Query: 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177
             P ++TY  L+NG C+ G+   A  LF EM            PD +TY T+ +GL +  
Sbjct: 520 DAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKG------LSPDTVTYGTLINGLLRFQ 573

Query: 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237
             + A ++F +M+     PD   Y +++   C   +   A  L+++ +            
Sbjct: 574 REEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQEDEAIK 633

Query: 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
            I     K         LLE+  ++    D   Y   + G C T RV  A ++F+ +E 
Sbjct: 634 AIEGYFEKQEVEKAVRGLLEMDFKLN-DFDLGPYAIWLIGLCQTRRVGEALKIFLILEE 691



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 87/175 (49%)

Query: 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228
           ITD L  +  ++   +    +K+  I      +  LI+ +      ++A   F  M D  
Sbjct: 97  ITDLLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFD 156

Query: 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288
             P+V T+N+I++ L +   +  A  +   M+++   P+ + ++ L+DG C +G V  A 
Sbjct: 157 CTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDAL 216

Query: 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
            LF  M   G + D F+Y ++I+G C++K ++ A  L+ +M   G+ P  VT N 
Sbjct: 217 HLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNA 271



 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 35/140 (25%)

Query: 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296
           ++I + L     ++   + LE +   G++     +  L+  +   G  ++A E F SM  
Sbjct: 95  DLITDLLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRD 154

Query: 297 NGCMRDVFSY-----------------------------------GILINGYCKNKEIEG 321
             C  DV++Y                                    ILI+G CK+  ++ 
Sbjct: 155 FDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKD 214

Query: 322 ALSLYSEMLSKGIRPTVVTY 341
           AL L+ EM  +GI P   TY
Sbjct: 215 ALHLFDEMTQRGILPDAFTY 234


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 175/388 (45%), Gaps = 68/388 (17%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           FN +      +      + +F  +   G  PD+++Y+IL++  CK G V  G+ +L  + 
Sbjct: 286 FNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMA 345

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK-------------------- 119
           R+  TP+ V+++SL+ GLC   R+  A  LF +L+  G K                    
Sbjct: 346 RNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLE 405

Query: 120 ---------------PDVFTYTTLINGLCRTGHTIVALNLFEEMA--------------- 149
                          PD + Y++LI   CR      AL +FE M                
Sbjct: 406 ICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILV 465

Query: 150 ----------------NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193
                           +   +FGVV  P+  TY  I +GLCK    +    +F  M    
Sbjct: 466 HGFSNEGLIGEAFLFLDKVRQFGVV--PNLCTYRVIINGLCKVNKPNDVWGIFADMIKRG 523

Query: 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253
             PD V Y+ +I GF  A D  EA  L+ +M+D+G +PN+ T+  ++N LC + K+ E  
Sbjct: 524 YVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVM 583

Query: 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313
            L + MI  G+ PD  +Y +L+  +C    +  A E+F  ME+ G   D F Y  LI G+
Sbjct: 584 TLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGF 643

Query: 314 CKNKEIEGALSLYSEMLSKGIRPTVVTY 341
            K   ++GA     EM++KG+ PTVVTY
Sbjct: 644 SKVLAMDGAQLFMEEMMNKGLTPTVVTY 671



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 159/329 (48%), Gaps = 6/329 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   ++      L + K   +  +  + L   G   + Y +N +I+ FC  G+V     V
Sbjct: 246 PNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEV 305

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              + +  F PD  +++ L+ GLC +  ++    +  ++   G  P++ +Y++L++GLCR
Sbjct: 306 FDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCR 365

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G   +A  LF+ + +         K D I YS +  G C+   ++   +L+  M   N 
Sbjct: 366 AGRVELAFELFKRLKDQG------FKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNF 419

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            PD   Y+SLI  +C      EA  +F  M+  G+ PNVVT  ++++     G + EA  
Sbjct: 420 VPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFL 479

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
            L+ + Q GV P+   Y  +++G C   + N    +F  M   G + D   Y I+I+G+ 
Sbjct: 480 FLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFV 539

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           K  +++ A  LY +M+ +G +P + TY +
Sbjct: 540 KALDLQEAFRLYYKMVDEGTKPNIFTYTS 568



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 150/317 (47%), Gaps = 11/317 (3%)

Query: 22  ILFGCLAKNKHYDTVL--SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           +L GC    +H D  +   L+  +      PD Y Y+ LI  +C+  ++     V   ++
Sbjct: 394 VLHGCC---QHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMI 450

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
                P+ VT T L+ G   E  I EA     K+R FG  P++ TY  +INGLC+     
Sbjct: 451 CDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPN 510

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
               +F +M     + G V  PD + YS I DG  K   + +A  L+ KM DE   P++ 
Sbjct: 511 DVWGIFADMI----KRGYV--PDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIF 564

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TYTSLI G C+ +   E   LF  M+ +G+ P+ + +  ++   CK   M  A  +   M
Sbjct: 565 TYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREM 624

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
              G+  D+ VY  L+ GF     ++ A+     M + G    V +Y  LI GY K  + 
Sbjct: 625 ETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDE 684

Query: 320 EGALSLYSEMLSKGIRP 336
           + A+ +Y+ ML  GI P
Sbjct: 685 KKAMVMYNSMLQAGIAP 701



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 125/256 (48%), Gaps = 6/256 (2%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V +  IL    +             ++   G+ P+L TY ++IN  CK+ + +  + +
Sbjct: 456 PNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGI 515

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
              +++  + PD V ++ +I G      + EA  L+ K+   G KP++FTYT+LINGLC 
Sbjct: 516 FADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCH 575

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
                  + LF+ M       G    PD I Y+++    CK   +  A E+F +M+ E +
Sbjct: 576 DDKLPEVMTLFKHM------IGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGL 629

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
           + D   YT LI GF      + A+    EMM++G+ P VVT+  ++    K G   +A  
Sbjct: 630 SADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMV 689

Query: 255 LLELMIQIGVRPDASV 270
           +   M+Q G+ PDA +
Sbjct: 690 MYNSMLQAGIAPDAKL 705



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 133/293 (45%), Gaps = 6/293 (2%)

Query: 11  HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP 70
           H   P   +++ L     +++     L +F+ +   G+ P++ T  IL++ F   G +  
Sbjct: 417 HNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGE 476

Query: 71  GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130
            F+ L ++ +    P+  T+  +I GLC  ++  +   +F  +   G  PD   Y+ +I+
Sbjct: 477 AFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIID 536

Query: 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           G  +      A  L+ +M +         KP+  TY+++ +GLC +  + +   LF  M 
Sbjct: 537 GFVKALDLQEAFRLYYKMVDEG------TKPNIFTYTSLINGLCHDDKLPEVMTLFKHMI 590

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
            E + PD + YTSLI  +C  ++   A  +F EM  +G+  +   +  ++    K   MD
Sbjct: 591 GEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMD 650

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303
            A   +E M+  G+ P    Y  L+ G+   G   +A  ++ SM   G   D 
Sbjct: 651 GAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSMLQAGIAPDA 703



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 2/174 (1%)

Query: 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW--NEAKCLFIEMMDQGV 229
           GL +   +   + LF  MK    +P++ +Y+ L+  + +       EA+ L  EM  +GV
Sbjct: 185 GLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEVEGV 244

Query: 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289
           +PN  T+   +  LC+  ++  A   L+++ Q G   ++  +N ++ GFC  G+V++A E
Sbjct: 245 RPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVE 304

Query: 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +F  M+  G + DV SY IL++G CK  ++     +  EM   GI P +V+Y++
Sbjct: 305 VFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSS 358



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 53/257 (20%)

Query: 93  LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152
           L+KGL   ++IM   +LF  ++  G  P++++Y+ L+                       
Sbjct: 182 LLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLM----------------------- 218

Query: 153 GEFGVVCKPDAITYSTITDG--LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210
                         S  T G  LC E    +A+EL  +M+ E + P+  TY + + G C 
Sbjct: 219 --------------SMYTHGAKLCLE----EAQELLSEMEVEGVRPNAATYGTYLYGLCR 260

Query: 211 AND----WNEAKCLFIEMMDQGVQP-NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265
           A      WN     F++M+ Q   P N   FN +++  C +G++ +A  + + M + G  
Sbjct: 261 AKQVKSAWN-----FLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFV 315

Query: 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325
           PD   Y+ L+DG C  G V     + V M  NG   ++ SY  L++G C+   +E A  L
Sbjct: 316 PDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFEL 375

Query: 326 YSEMLSKGIRPTVVTYN 342
           +  +  +G +   + Y+
Sbjct: 376 FKRLKDQGFKHDHIVYS 392


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 157/327 (48%), Gaps = 6/327 (1%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  + IL     +N   D    +F R++ +GL  + Y Y I+IN F K G    GF +
Sbjct: 140 PNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             ++      P+  T+ SLI   C + ++  A  +F ++   G   +  TY  LI GLCR
Sbjct: 200 YQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCR 259

Query: 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194
            G    A  L E M   +        P   T++ + DGLC  G +DKA     K+K   +
Sbjct: 260 KGQVSKAEGLLERMKRAH------INPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGL 313

Query: 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254
            P +VTY  LI GF    + +    L  EM D+G+ P+ VT+ ++MN   ++  +++A  
Sbjct: 314 CPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYE 373

Query: 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314
           +  LM +IG+ PD   Y  L+ G C+ G +  A +L+ SM       +   Y  +INGYC
Sbjct: 374 MFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYC 433

Query: 315 KNKEIEGALSLYSEMLSKGIRPTVVTY 341
           K      AL    EM+  G+ P V +Y
Sbjct: 434 KECNSYKALKFLEEMVKNGVTPNVASY 460



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 166/317 (52%), Gaps = 6/317 (1%)

Query: 20  FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79
           + I+     K  +      L++++  +G+ P+LYTYN LI  +C+ G++S  F V   I 
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEIS 239

Query: 80  RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139
           +     +AVT+  LI GLC + ++ +A  L  +++     P   T+  L++GLC TG   
Sbjct: 240 KRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLD 299

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
            AL+  E++     +   +C P  +TY+ +  G  K G      EL  +M+D  I+P  V
Sbjct: 300 KALSYLEKL-----KLIGLC-PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKV 353

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
           TYT L+  F  ++D  +A  +F  M   G+ P+  T+ V+++ LC  G M EAS+L + M
Sbjct: 354 TYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSM 413

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
           +++ ++P+  +YNT+++G+C      +A +    M  NG   +V SY   I   CK+ + 
Sbjct: 414 VEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKS 473

Query: 320 EGALSLYSEMLSKGIRP 336
             A  L  EM   G++P
Sbjct: 474 IEAKRLLKEMTEAGLKP 490



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 6/327 (1%)

Query: 17  VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLG 76
           V SF I      +N +      L  ++ ++G+ P+++ Y ILI   C+ G +    V+  
Sbjct: 107 VYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFS 166

Query: 77  RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
           R+       +   +T +I G   +    +   L+ K++  G  P+++TY +LI   CR G
Sbjct: 167 RMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDG 226

Query: 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP 196
              +A  +F+E++    + GV C  +A+TY+ +  GLC++G V KA+ L  +MK  +INP
Sbjct: 227 KLSLAFKVFDEIS----KRGVAC--NAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINP 280

Query: 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256
              T+  L+ G C     ++A     ++   G+ P +VT+N++++   K G     S L+
Sbjct: 281 TTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELV 340

Query: 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316
             M   G+ P    Y  LM+ F  +  + +A E+F  M+  G + D  +YG+LI+G C  
Sbjct: 341 REMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIK 400

Query: 317 KEIEGALSLYSEMLSKGIRPTVVTYNT 343
             +  A  LY  M+   ++P  V YNT
Sbjct: 401 GNMVEASKLYKSMVEMHLQPNDVIYNT 427



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 134/287 (46%), Gaps = 33/287 (11%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P + ++N L     ++        +F  ++  G+  +  TYNILI   C+ G+VS    +
Sbjct: 210 PNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGL 269

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           L R+ R+   P   TF  L+ GLC   ++ +A +   KL+  G  P + TY  LI+G  +
Sbjct: 270 LERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSK 329

Query: 135 TGHTIVALNLFEEMANGN-------------------------------GEFGVVCKPDA 163
            G++ V   L  EM +                                    G+V  PD 
Sbjct: 330 VGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLV--PDQ 387

Query: 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223
            TY  +  GLC +G + +A +L+  M + ++ P+ V Y ++I G+C   +  +A     E
Sbjct: 388 HTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEE 447

Query: 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASV 270
           M+  GV PNV ++   +  LCK+GK  EA RLL+ M + G++P  S+
Sbjct: 448 MVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPESL 494



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 15/263 (5%)

Query: 82  CFTP-DAVTFTSLIKGLCAESRIMEAAALFTKLRAF-GCKPDVFTYTTLINGLCRTGHTI 139
           C  P DAV   SL      +S+++E +    KL    G  P  F++   ++ L ++G+  
Sbjct: 37  CGRPRDAVINASL------QSQLLEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLD 90

Query: 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199
                F E   G  +F      D  ++       C+ G V K  EL  +M+   ++P+V 
Sbjct: 91  RTWGFFTEYL-GRTQF------DVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVF 143

Query: 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259
            YT LI   C   D ++AK +F  M D G+  N   + +++N   K G   +   L + M
Sbjct: 144 IYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKM 203

Query: 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319
             +GV P+   YN+L+  +C  G+++ A ++F  +   G   +  +Y ILI G C+  ++
Sbjct: 204 KLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQV 263

Query: 320 EGALSLYSEMLSKGIRPTVVTYN 342
             A  L   M    I PT  T+N
Sbjct: 264 SKAEGLLERMKRAHINPTTRTFN 286



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 6/182 (3%)

Query: 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLF 221
           DA+  +++   L ++  +D  K + LK      +P   ++ + +     + + +     F
Sbjct: 42  DAVINASLQSQLLEQS-LDGFKLMVLK----GHSPSSFSFNNALDLLAKSGNLDRTWGFF 96

Query: 222 IEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281
            E + +  Q +V +F + +   C+NG + +   LL  M  +GV P+  +Y  L++  C  
Sbjct: 97  TEYLGR-TQFDVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRN 155

Query: 282 GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTY 341
           G +++AK +F  M+  G   + + Y I+ING+ K    +    LY +M   G+ P + TY
Sbjct: 156 GDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTY 215

Query: 342 NT 343
           N+
Sbjct: 216 NS 217


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 170/332 (51%), Gaps = 14/332 (4%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P   +F+ILF   + N+  +  L +++     G+  + YT +IL+N  CK G++     +
Sbjct: 317 PDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEI 376

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
           LGR +     P+ V + ++I G C +  ++ A      +   G KPD   Y  LI   C 
Sbjct: 377 LGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCE 436

Query: 135 TGHTIVALNLFEEMANGNGEFGVV----CKPDAITYSTITDGLCKEGFVDKAKELFLKMK 190
            G          EM N   E   +      P   TY+ +  G  ++   DK  ++  +M+
Sbjct: 437 LG----------EMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEME 486

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
           D    P+VV+Y +LI   C  +   EA+ +  +M D+GV P V  +N++++  C  GK++
Sbjct: 487 DNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIE 546

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           +A R  + M++ G+  +   YNTL+DG  +TG+++ A++L + +   G   DVF+Y  LI
Sbjct: 547 DAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLI 606

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           +GY     ++  ++LY EM   GI+PT+ TY+
Sbjct: 607 SGYGFAGNVQRCIALYEEMKRSGIKPTLKTYH 638



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 163/337 (48%), Gaps = 6/337 (1%)

Query: 6   YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM 65
           + LR     P   S  +L   L K K +   +++F  +      P  + Y   I    K+
Sbjct: 133 FALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKL 192

Query: 66  GRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125
             V  G  +  R+      P    +  LI GLC   R+ +A  LF ++ A    P + TY
Sbjct: 193 SDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 252

Query: 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL 185
            TLI+G C+ G+   +  + E M   + E      P  IT++T+  GL K G V+ A+ +
Sbjct: 253 NTLIDGYCKAGNPEKSFKVRERMKADHIE------PSLITFNTLLKGLFKAGMVEDAENV 306

Query: 186 FLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245
             +MKD    PD  T++ L  G+        A  ++   +D GV+ N  T ++++N LCK
Sbjct: 307 LKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCK 366

Query: 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305
            GK+++A  +L   +  G+ P+  +YNT++DG+C  G +  A+    +ME  G   D  +
Sbjct: 367 EGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLA 426

Query: 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           Y  LI  +C+  E+E A    ++M  KG+ P+V TYN
Sbjct: 427 YNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYN 463



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 165/393 (41%), Gaps = 64/393 (16%)

Query: 15  PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVV 74
           P V  +N+L   L K K  +    LF  + +  L P L TYN LI+ +CK G     F V
Sbjct: 212 PSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKV 271

Query: 75  LGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134
             R+      P  +TF +L+KGL     + +A  +  +++  G  PD FT++ L +G   
Sbjct: 272 RERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSS 331

Query: 135 TGHTIVALNLFEEMANGNGE---------FGVVCK--------------------PDAIT 165
                 AL ++E   +   +            +CK                    P+ + 
Sbjct: 332 NEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVI 391

Query: 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC---------------- 209
           Y+T+ DG C++G +  A+     M+ + + PD + Y  LIR FC                
Sbjct: 392 YNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMK 451

Query: 210 -----------------YANDWNEAKCLFI--EMMDQGVQPNVVTFNVIMNELCKNGKMD 250
                            Y   +   KC  I  EM D G  PNVV++  ++N LCK  K+ 
Sbjct: 452 LKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLL 511

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           EA  +   M   GV P   +YN L+DG C  G++  A      M   G   ++ +Y  LI
Sbjct: 512 EAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLI 571

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           +G     ++  A  L  E+  KG++P V TYN+
Sbjct: 572 DGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNS 604



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 155/326 (47%), Gaps = 10/326 (3%)

Query: 8   LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67
           +++    P V ++NIL G   +   +D    + K +   G  P++ +Y  LINC CK  +
Sbjct: 450 MKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSK 509

Query: 68  VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127
           +    +V   +     +P    +  LI G C++ +I +A     ++   G + ++ TY T
Sbjct: 510 LLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNT 569

Query: 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187
           LI+GL  TG    A +L  E++          KPD  TY+++  G    G V +   L+ 
Sbjct: 570 LIDGLSMTGKLSEAEDLLLEISRKG------LKPDVFTYNSLISGYGFAGNVQRCIALYE 623

Query: 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247
           +MK   I P + TY  LI   C        + LF EM    ++P+++ +N +++    +G
Sbjct: 624 EMKRSGIKPTLKTYHLLI-SLCTKEGIELTERLFGEM---SLKPDLLVYNGVLHCYAVHG 679

Query: 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307
            M++A  L + MI+  +  D + YN+L+ G    G++   + L   M +     +  +Y 
Sbjct: 680 DMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYN 739

Query: 308 ILINGYCKNKEIEGALSLYSEMLSKG 333
           I++ G+C+ K+   A   Y EM  KG
Sbjct: 740 IIVKGHCEVKDYMSAYVWYREMQEKG 765



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 146/296 (49%), Gaps = 10/296 (3%)

Query: 47  GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106
           G+ P + TYNILI  + +       F +L  +  +   P+ V++ +LI  LC  S+++EA
Sbjct: 454 GVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEA 513

Query: 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166
             +   +   G  P V  Y  LI+G C  G    A    +EM     E  +V      TY
Sbjct: 514 QIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLV------TY 567

Query: 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226
           +T+ DGL   G + +A++L L++  + + PDV TY SLI G+ +A +      L+ EM  
Sbjct: 568 NTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKR 627

Query: 227 QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286
            G++P + T++++++ LC    ++   RL     ++ ++PD  VYN ++  + + G + +
Sbjct: 628 SGIKPTLKTYHLLIS-LCTKEGIELTERLFG---EMSLKPDLLVYNGVLHCYAVHGDMEK 683

Query: 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYN 342
           A  L   M       D  +Y  LI G  K  ++    SL  EM ++ + P   TYN
Sbjct: 684 AFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYN 739



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 150/328 (45%), Gaps = 12/328 (3%)

Query: 4   FDYMLRMHP--SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC 61
           FD +  M    + P V S+  L  CL K         + + +   G+ P +  YN+LI+ 
Sbjct: 479 FDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDG 538

Query: 62  FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121
            C  G++   F     +L+     + VT+ +LI GL    ++ EA  L  ++   G KPD
Sbjct: 539 CCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPD 598

Query: 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181
           VFTY +LI+G    G+    + L+EEM           KP   TY  +     KEG ++ 
Sbjct: 599 VFTYNSLISGYGFAGNVQRCIALYEEMKRSG------IKPTLKTYHLLISLCTKEG-IEL 651

Query: 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241
            + LF +M   ++ PD++ Y  ++  +    D  +A  L  +M+++ +  +  T+N ++ 
Sbjct: 652 TERLFGEM---SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLIL 708

Query: 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301
              K GK+ E   L++ M    + P+A  YN ++ G C       A   +  M+  G + 
Sbjct: 709 GQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLL 768

Query: 302 DVFSYGILINGYCKNKEIEGALSLYSEM 329
           DV     L++G  +    + A  + SEM
Sbjct: 769 DVCIGNELVSGLKEEWRSKEAEIVISEM 796



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 150/333 (45%), Gaps = 48/333 (14%)

Query: 59  INCFCKMGRVSPGFVVLGRILRSCFTP--------DAVTFTS----------LIKGLCAE 100
           +    +  R+     VL  +LRS  TP         A + +S          L+  L  E
Sbjct: 62  LRVLLQQNRIETARGVLSSLLRSDSTPFASPKELFSAFSLSSPSLKHDFSYLLLSVLLNE 121

Query: 101 SR-IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGE----- 154
           S+ I EAA LF  LR  G  P   + T L++ L +T    V +N+F  +   +       
Sbjct: 122 SKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFM 181

Query: 155 FGVVCK------------------------PDAITYSTITDGLCKEGFVDKAKELFLKMK 190
           +G   +                        P    Y+ + DGLCK   ++ A++LF +M 
Sbjct: 182 YGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEML 241

Query: 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250
              + P ++TY +LI G+C A +  ++  +   M    ++P+++TFN ++  L K G ++
Sbjct: 242 ARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVE 301

Query: 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310
           +A  +L+ M  +G  PDA  ++ L DG+    +   A  ++ +   +G   + ++  IL+
Sbjct: 302 DAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILL 361

Query: 311 NGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343
           N  CK  +IE A  +    ++KG+ P  V YNT
Sbjct: 362 NALCKEGKIEKAEEILGREMAKGLVPNEVIYNT 394


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.326    0.141    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,222,923,064
Number of Sequences: 23463169
Number of extensions: 205466523
Number of successful extensions: 799278
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8517
Number of HSP's successfully gapped in prelim test: 4175
Number of HSP's that attempted gapping in prelim test: 556475
Number of HSP's gapped (non-prelim): 83234
length of query: 343
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 200
effective length of database: 9,003,962,200
effective search space: 1800792440000
effective search space used: 1800792440000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)