BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040261
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 36 VLSLFKRLNSIGLFPDLYTYNILINCFCKMGR----------VSPGFVVLGRILRSCFTP 85
L L+ G+ Y YN+L+ C + +S GF + +++ P
Sbjct: 45 ALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103
Query: 86 DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLF 145
+ TFT+ + A+ A + +++AFG +P + +Y + G CR G A +
Sbjct: 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163
Query: 146 EEM 148
M
Sbjct: 164 AHM 166
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 111 TKLRAFGCKPDVFTYTTLINGLC-RTGHTIVALNLFEEMANGNG------EFGV---VCK 160
K +A P+ L +C + G + AL L++E A NG + V VC
Sbjct: 16 AKKKAIQQSPEALLKQKL--DMCSKKGDVLEALRLYDE-ARRNGVQLSQYHYNVLLYVCS 72
Query: 161 -PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219
+A T S+ GL + GF ++F +M + + P+ T+T+ R +D A
Sbjct: 73 LAEAATESSPNPGLSR-GF-----DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFD 126
Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252
+ +M G+QP + ++ + C+ G D+A
Sbjct: 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279
+F +M+ V PN TF + A +++ M G++P Y + GFC
Sbjct: 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC 151
Query: 280 LTGRVNRAKELFVSM 294
G ++A E+ M
Sbjct: 152 RKGDADKAYEVDAHM 166
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 36 VLSLFKRLNSIGLFPDLYTYNILINCFCKMGR----------VSPGFVVLGRILRSCFTP 85
L L+ G+ Y YN+L+ C + +S GF + + + P
Sbjct: 45 ALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQXIVDKVVP 103
Query: 86 DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136
+ TFT+ + A+ A + +AFG +P + +Y + G CR G
Sbjct: 104 NEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKG 154
>pdb|1PGX|A Chain A, The 1.66 Angstroms X-Ray Structure Of The B2
Immunoglobulin- Binding Domain Of Streptococcal Protein
G And Comparison To The Nmr Structure Of The B1 Domain
Length = 83
Score = 31.6 bits (70), Expect = 0.63, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 120 PDVFTYTTLINGLCRTGHTIV-------ALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172
P V TY +ING G T A F++ AN NG GV DA T+T+
Sbjct: 11 PAVTTYKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEM 70
Query: 173 LCKEGFVDKAKE 184
+ + K KE
Sbjct: 71 VTEVPVASKRKE 82
>pdb|2ILR|A Chain A, Crystal Structure Of Human Fanconi Anemia Protein E C-
Terminal Domain
Length = 264
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE-MMDQGVQPNVVTFNVIMNELCKNG 247
+K E++ PD L+ G W E L ++ ++++ V+ F+V+M +LCK G
Sbjct: 152 VKMESLEPDAQV---LMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKG 208
>pdb|1IGC|A Chain A, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of
Protein G From Streptococcus
pdb|1IGD|A Chain A, The Third Igg-Binding Domain From Streptococcal Protein G:
An Analysis By X-Ray Crystallography Of The Structure
Alone And In A Complex With Fab
pdb|2IGD|A Chain A, Anisotropic Structure Of Protein G Igg-Binding Domain Iii
At 1.1 Angstrom Resolution
Length = 61
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 120 PDVFTYTTLINGLCRTGHTIV-------ALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
P V TY +ING G T A F++ AN NG GV DA T+T+
Sbjct: 3 PAVTTYKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE 61
>pdb|2IGH|A Chain A, Determination Of The Solution Structures Of Domains Ii And
Iii Of Protein G From Streptococcus By 1h Nmr
Length = 61
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 120 PDVFTYTTLINGLCRTGHTIV-------ALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
P V TY +ING G T A F++ AN NG GV DA T+T+
Sbjct: 3 PAVTTYKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE 61
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
IL N Y + + + GA L ++ S+G+ P VVT
Sbjct: 100 ILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
IL N Y + + + GA L ++ S+G+ P VVT
Sbjct: 100 ILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
IL N Y + + + GA L ++ S+G+ P VVT
Sbjct: 100 ILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
IL N Y + + + GA L ++ S+G+ P VVT
Sbjct: 100 ILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
IL N Y + + + GA L ++ S+G+ P VVT
Sbjct: 100 ILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
IL N Y + + + GA L ++ S+G+ P VVT
Sbjct: 100 ILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 308 ILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340
IL N Y + + + GA L ++ S+G+ P VVT
Sbjct: 100 ILFNSYPEAERMPGAWELLQKVKSEGLTPMVVT 132
>pdb|1UWX|A Chain A, P1.2 Serosubtype Antigen Derived From N. Meningitidis Pora
In Complex With Fab Fragment
pdb|1UWX|B Chain B, P1.2 Serosubtype Antigen Derived From N. Meningitidis Pora
In Complex With Fab Fragment
Length = 63
Score = 28.1 bits (61), Expect = 7.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 120 PDVFTYTTLINGLCRTGHTIV-------ALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
P V TY +ING G T A +F++ AN NG G DA T+T+
Sbjct: 2 PAVTTYKLVINGKTLKGETTTKAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE 60
>pdb|1QKZ|A Chain A, Fab Fragment (Mn14c11.6) In Complex With A Peptide Antigen
Derived From Neisseria Meningitidis P1.7 Serosubtype
Antigen And Domain Ii From Streptococcal Protein G
Length = 64
Score = 28.1 bits (61), Expect = 7.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 120 PDVFTYTTLINGLCRTGHTIV-------ALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
P V TY +ING G T A +F++ AN NG G DA T+T+
Sbjct: 3 PAVTTYKLVINGKTLKGETTTKAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE 61
>pdb|2IGG|A Chain A, Determination Of The Solution Structures Of Domains Ii And
Iii Of Protein G From Streptococcus By 1h Nmr
Length = 64
Score = 28.1 bits (61), Expect = 7.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 120 PDVFTYTTLINGLCRTGHTIV-------ALNLFEEMANGNGEFGVVCKPDAITYSTITD 171
P V TY +ING G T A +F++ AN NG G DA T+T+
Sbjct: 3 PAVTTYKLVINGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE 61
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
P T T DGL K + ++ + D + +IRGFC+ D EA C+
Sbjct: 42 PPVTTVLTREDGL-------KYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCV 94
Query: 221 FIEMMDQGVQP 231
+E G+ P
Sbjct: 95 GLEA---GINP 102
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
P T T DGL K + ++ + D + +IRGFC+ D EA C+
Sbjct: 42 PPVTTVLTREDGL-------KYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCV 94
Query: 221 FIEMMDQGVQP 231
+E G+ P
Sbjct: 95 GLEA---GINP 102
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
P T T DGL K + ++ + D + +IRGFC+ D EA C+
Sbjct: 42 PPVTTVLTREDGL-------KYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCV 94
Query: 221 FIEMMDQGVQP 231
+E G+ P
Sbjct: 95 GLEA---GINP 102
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
P T T DGL K + ++ + D + +IRGFC+ D EA C+
Sbjct: 42 PPVTTVLTREDGL-------KYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCV 94
Query: 221 FIEMMDQGVQP 231
+E G+ P
Sbjct: 95 GLEA---GINP 102
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220
P T T DGL K + ++ + D + +IRGFC+ D EA C+
Sbjct: 25 PPVTTVLTREDGL-------KYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCV 77
Query: 221 FIEMMDQGVQP 231
+E G+ P
Sbjct: 78 GLEA---GINP 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,004,138
Number of Sequences: 62578
Number of extensions: 399892
Number of successful extensions: 1239
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 39
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)