Query 040261
Match_columns 343
No_of_seqs 608 out of 1470
Neff 12.2
Searched_HMMs 46136
Date Fri Mar 29 06:41:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.7E-59 5.8E-64 415.3 41.2 335 2-343 458-794 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.7E-59 1.9E-63 412.0 41.0 325 15-343 435-759 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.8E-52 4E-57 368.5 31.3 324 2-343 108-467 (697)
4 PLN03081 pentatricopeptide (PP 100.0 8.4E-52 1.8E-56 364.3 32.6 320 2-343 144-499 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 4.1E-50 8.9E-55 361.5 33.6 314 15-342 220-629 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 4.4E-50 9.5E-55 361.3 32.5 315 15-343 150-594 (857)
7 PRK11788 tetratricopeptide rep 100.0 7.2E-25 1.6E-29 182.2 34.7 309 19-339 37-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-23 2.3E-28 194.0 39.2 312 3-332 555-866 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.7E-23 5.9E-28 191.3 39.2 299 16-330 600-898 (899)
10 PRK11788 tetratricopeptide rep 99.9 1.3E-23 2.9E-28 174.7 30.8 289 2-304 56-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 7.7E-21 1.7E-25 165.8 38.6 313 3-332 64-381 (656)
12 PRK15174 Vi polysaccharide exp 99.9 1.4E-19 3.1E-24 157.9 37.1 300 19-332 44-347 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-18 5.2E-23 150.6 38.7 233 89-332 333-571 (615)
14 TIGR00990 3a0801s09 mitochondr 99.9 4.5E-18 9.8E-23 148.9 38.7 304 19-333 129-497 (615)
15 KOG4626 O-linked N-acetylgluco 99.9 2.8E-19 6.2E-24 145.0 25.6 301 13-330 112-415 (966)
16 PRK11447 cellulose synthase su 99.9 1.2E-17 2.6E-22 155.5 39.5 301 24-336 358-745 (1157)
17 PRK11447 cellulose synthase su 99.9 1.1E-17 2.3E-22 155.8 39.0 317 2-332 290-700 (1157)
18 KOG4626 O-linked N-acetylgluco 99.9 1.1E-18 2.4E-23 141.7 26.3 317 2-339 137-490 (966)
19 PRK10049 pgaA outer membrane p 99.8 1.4E-16 3E-21 142.2 37.9 321 3-338 37-426 (765)
20 PRK10049 pgaA outer membrane p 99.8 4.5E-16 9.7E-21 139.0 38.4 322 2-338 70-460 (765)
21 KOG4422 Uncharacterized conser 99.8 1E-15 2.2E-20 119.3 30.8 246 14-263 204-463 (625)
22 PF13429 TPR_15: Tetratricopep 99.8 5.2E-19 1.1E-23 139.8 13.2 262 22-295 13-275 (280)
23 PRK10747 putative protoheme IX 99.8 2.1E-15 4.6E-20 124.6 34.9 286 29-332 96-390 (398)
24 TIGR00540 hemY_coli hemY prote 99.8 9.7E-16 2.1E-20 127.3 32.3 291 28-331 95-398 (409)
25 PF13429 TPR_15: Tetratricopep 99.8 5.1E-19 1.1E-23 139.9 12.2 262 57-331 13-276 (280)
26 PRK09782 bacteriophage N4 rece 99.8 7E-15 1.5E-19 132.2 38.9 315 4-338 365-710 (987)
27 PRK14574 hmsH outer membrane p 99.8 1.2E-14 2.6E-19 128.1 37.2 145 2-152 55-199 (822)
28 PRK14574 hmsH outer membrane p 99.8 6E-14 1.3E-18 123.8 37.7 302 20-330 105-477 (822)
29 COG3071 HemY Uncharacterized e 99.8 6.3E-14 1.4E-18 108.5 32.0 293 30-338 97-396 (400)
30 COG2956 Predicted N-acetylgluc 99.8 2E-14 4.3E-19 108.2 28.1 290 29-333 47-348 (389)
31 KOG1126 DNA-binding cell divis 99.8 1.7E-15 3.8E-20 124.2 24.4 292 31-338 333-626 (638)
32 PRK09782 bacteriophage N4 rece 99.8 3.4E-14 7.4E-19 127.8 34.7 264 51-332 476-740 (987)
33 PRK10747 putative protoheme IX 99.7 4.8E-14 1E-18 116.6 31.6 263 17-296 117-389 (398)
34 KOG4422 Uncharacterized conser 99.7 6.6E-14 1.4E-18 109.5 28.0 308 15-333 114-463 (625)
35 TIGR00540 hemY_coli hemY prote 99.7 1.4E-13 3E-18 114.5 31.6 269 18-296 119-398 (409)
36 KOG1155 Anaphase-promoting com 99.7 7.1E-14 1.5E-18 110.2 27.3 291 25-329 235-533 (559)
37 COG2956 Predicted N-acetylgluc 99.7 1.9E-13 4.2E-18 102.9 28.1 279 2-297 56-347 (389)
38 KOG2076 RNA polymerase III tra 99.7 4.4E-13 9.6E-18 113.9 32.7 318 2-330 160-510 (895)
39 COG3071 HemY Uncharacterized e 99.7 3.4E-12 7.3E-17 99.1 31.3 271 16-301 117-394 (400)
40 KOG1126 DNA-binding cell divis 99.7 6.1E-14 1.3E-18 115.3 22.2 278 3-298 341-621 (638)
41 KOG2076 RNA polymerase III tra 99.7 3.4E-12 7.4E-17 108.6 32.1 304 23-338 145-482 (895)
42 PRK12370 invasion protein regu 99.7 7.5E-13 1.6E-17 114.3 29.1 268 49-333 253-536 (553)
43 PRK12370 invasion protein regu 99.6 1.7E-12 3.7E-17 112.1 29.8 266 15-297 254-535 (553)
44 KOG0547 Translocase of outer m 99.6 3.3E-12 7.2E-17 101.7 27.5 195 125-330 363-564 (606)
45 KOG0495 HAT repeat protein [RN 99.6 2.7E-11 5.8E-16 100.0 32.1 303 16-332 549-880 (913)
46 KOG1155 Anaphase-promoting com 99.6 4.3E-11 9.4E-16 94.8 31.8 166 162-331 329-494 (559)
47 TIGR02521 type_IV_pilW type IV 99.6 1.6E-12 3.5E-17 100.4 24.2 202 51-261 30-231 (234)
48 TIGR02521 type_IV_pilW type IV 99.6 2.5E-12 5.4E-17 99.3 25.2 198 124-331 33-231 (234)
49 KOG2002 TPR-containing nuclear 99.6 2.5E-12 5.5E-17 110.3 26.7 279 49-338 449-751 (1018)
50 KOG2003 TPR repeat-containing 99.6 3.6E-12 7.7E-17 100.9 25.2 281 24-318 426-709 (840)
51 KOG2003 TPR repeat-containing 99.6 3.7E-12 8E-17 100.8 24.3 186 135-332 503-689 (840)
52 KOG1129 TPR repeat-containing 99.6 1.3E-12 2.7E-17 98.9 20.0 231 91-333 227-459 (478)
53 KOG1129 TPR repeat-containing 99.6 1.3E-12 2.8E-17 98.9 19.3 230 55-297 226-458 (478)
54 PF12569 NARP1: NMDA receptor- 99.6 8.7E-11 1.9E-15 98.6 31.3 297 19-331 6-333 (517)
55 KOG4318 Bicoid mRNA stability 99.6 2.3E-12 5E-17 109.5 21.9 254 2-283 11-286 (1088)
56 KOG1173 Anaphase-promoting com 99.5 5.3E-11 1.1E-15 96.6 27.9 287 15-315 242-534 (611)
57 KOG2002 TPR-containing nuclear 99.5 8.1E-11 1.7E-15 101.3 30.3 307 15-332 268-593 (1018)
58 KOG1173 Anaphase-promoting com 99.5 5.1E-11 1.1E-15 96.7 25.9 277 50-340 242-524 (611)
59 KOG0495 HAT repeat protein [RN 99.5 8.3E-10 1.8E-14 91.5 32.8 264 55-332 519-782 (913)
60 KOG4318 Bicoid mRNA stability 99.5 4.8E-12 1E-16 107.6 19.6 260 38-318 11-286 (1088)
61 KOG1915 Cell cycle control pro 99.5 1.5E-09 3.1E-14 86.8 30.6 321 2-332 94-536 (677)
62 COG3063 PilF Tfp pilus assembl 99.5 4.7E-10 1E-14 81.1 24.2 206 89-306 37-243 (250)
63 KOG1174 Anaphase-promoting com 99.5 1.1E-09 2.3E-14 86.0 27.9 288 30-332 209-500 (564)
64 COG3063 PilF Tfp pilus assembl 99.5 3.6E-10 7.9E-15 81.7 23.2 193 58-259 41-233 (250)
65 cd05804 StaR_like StaR_like; a 99.4 4.9E-09 1.1E-13 86.4 33.5 307 15-332 4-336 (355)
66 PRK11189 lipoprotein NlpI; Pro 99.4 5.3E-10 1.1E-14 88.9 26.0 195 89-298 66-266 (296)
67 KOG1840 Kinesin light chain [C 99.4 1.4E-10 3.1E-15 96.3 23.3 244 52-295 199-477 (508)
68 KOG1840 Kinesin light chain [C 99.4 5.5E-11 1.2E-15 98.7 20.9 247 15-261 197-478 (508)
69 PRK11189 lipoprotein NlpI; Pro 99.4 8.5E-10 1.8E-14 87.7 26.3 219 30-263 39-266 (296)
70 KOG0547 Translocase of outer m 99.4 1.8E-10 3.8E-15 92.1 21.6 153 29-191 338-490 (606)
71 PF13041 PPR_2: PPR repeat fam 99.4 1E-12 2.2E-17 73.7 6.2 49 15-63 1-49 (50)
72 PF13041 PPR_2: PPR repeat fam 99.4 1.2E-12 2.6E-17 73.5 6.4 49 85-133 1-49 (50)
73 PF12569 NARP1: NMDA receptor- 99.4 6.8E-09 1.5E-13 87.4 29.1 262 58-334 10-293 (517)
74 KOG1174 Anaphase-promoting com 99.4 7.5E-09 1.6E-13 81.4 27.0 273 10-298 225-501 (564)
75 KOG1915 Cell cycle control pro 99.3 4.2E-08 9.1E-13 78.7 30.5 300 17-331 73-394 (677)
76 KOG0624 dsRNA-activated protei 99.3 1.2E-07 2.5E-12 73.1 28.3 305 14-333 35-371 (504)
77 cd05804 StaR_like StaR_like; a 99.3 7.2E-08 1.6E-12 79.5 29.3 269 19-297 45-336 (355)
78 PF04733 Coatomer_E: Coatomer 99.3 1.2E-09 2.5E-14 85.7 17.3 251 25-297 9-265 (290)
79 KOG4340 Uncharacterized conser 99.2 1.1E-08 2.4E-13 77.1 21.3 195 19-229 12-209 (459)
80 KOG2047 mRNA splicing factor [ 99.2 4.5E-07 9.7E-12 75.7 32.1 100 164-263 388-507 (835)
81 PF04733 Coatomer_E: Coatomer 99.2 1.4E-09 2.9E-14 85.3 16.8 251 60-332 9-265 (290)
82 KOG4162 Predicted calmodulin-b 99.2 3.8E-07 8.3E-12 77.5 31.5 98 234-333 685-784 (799)
83 KOG1125 TPR repeat-containing 99.2 9.9E-09 2.2E-13 84.0 21.2 225 24-260 292-525 (579)
84 KOG1070 rRNA processing protei 99.2 7.4E-08 1.6E-12 86.7 25.7 234 50-293 1456-1696(1710)
85 KOG1156 N-terminal acetyltrans 99.2 1.1E-06 2.4E-11 73.4 30.5 169 15-192 73-248 (700)
86 PLN02789 farnesyltranstransfer 99.1 5.4E-07 1.2E-11 71.8 27.1 216 18-245 38-267 (320)
87 KOG1125 TPR repeat-containing 99.1 3.7E-08 8.1E-13 80.7 20.8 258 61-325 294-564 (579)
88 KOG1070 rRNA processing protei 99.1 2.2E-07 4.7E-12 83.9 26.8 239 74-325 1446-1693(1710)
89 PLN02789 farnesyltranstransfer 99.1 3.6E-07 7.9E-12 72.8 25.7 213 56-280 41-267 (320)
90 KOG3785 Uncharacterized conser 99.1 6.1E-07 1.3E-11 69.6 25.0 98 239-342 399-498 (557)
91 KOG0548 Molecular co-chaperone 99.1 1.5E-06 3.2E-11 71.1 26.8 124 207-332 307-455 (539)
92 KOG1156 N-terminal acetyltrans 99.0 8.4E-07 1.8E-11 74.1 25.3 264 18-296 9-282 (700)
93 PRK04841 transcriptional regul 99.0 2.1E-06 4.5E-11 80.0 31.1 315 19-333 411-761 (903)
94 TIGR03302 OM_YfiO outer membra 99.0 1.1E-07 2.3E-12 73.5 19.1 187 15-227 31-232 (235)
95 KOG1128 Uncharacterized conser 99.0 9.8E-08 2.1E-12 80.5 18.7 216 90-332 401-616 (777)
96 KOG4340 Uncharacterized conser 99.0 8.8E-07 1.9E-11 67.1 21.4 262 15-293 42-335 (459)
97 PRK14720 transcript cleavage f 99.0 1E-06 2.3E-11 78.4 25.1 173 11-227 25-198 (906)
98 PRK10370 formate-dependent nit 99.0 3.7E-07 8.1E-12 67.8 19.0 149 170-333 23-174 (198)
99 KOG0624 dsRNA-activated protei 99.0 7.4E-06 1.6E-10 63.5 28.4 310 15-339 70-427 (504)
100 COG5010 TadD Flp pilus assembl 99.0 2.7E-07 5.9E-12 68.5 17.5 121 168-291 105-225 (257)
101 KOG2047 mRNA splicing factor [ 99.0 1.1E-05 2.4E-10 67.8 28.3 92 19-114 104-196 (835)
102 COG5010 TadD Flp pilus assembl 98.9 7.4E-07 1.6E-11 66.3 19.3 159 91-259 70-228 (257)
103 TIGR03302 OM_YfiO outer membra 98.9 6.9E-07 1.5E-11 69.0 20.1 60 273-332 171-232 (235)
104 KOG4162 Predicted calmodulin-b 98.9 3E-06 6.6E-11 72.3 24.7 283 2-297 465-783 (799)
105 PRK04841 transcriptional regul 98.9 6.9E-06 1.5E-10 76.6 30.2 304 28-332 385-720 (903)
106 KOG3081 Vesicle coat complex C 98.9 7.7E-06 1.7E-10 61.1 24.2 256 17-297 10-271 (299)
107 PRK15179 Vi polysaccharide bio 98.9 2.1E-06 4.6E-11 75.5 24.3 135 49-192 83-217 (694)
108 PRK10370 formate-dependent nit 98.9 1.2E-06 2.6E-11 65.1 19.6 120 176-298 52-174 (198)
109 KOG2376 Signal recognition par 98.9 2.3E-05 4.9E-10 65.2 29.2 171 16-193 45-254 (652)
110 KOG2376 Signal recognition par 98.9 2E-05 4.2E-10 65.6 27.6 312 19-339 14-420 (652)
111 KOG1128 Uncharacterized conser 98.9 4E-07 8.7E-12 77.0 17.9 220 15-261 396-615 (777)
112 PRK15359 type III secretion sy 98.9 2.3E-07 4.9E-12 65.2 14.2 97 19-117 26-122 (144)
113 PRK15179 Vi polysaccharide bio 98.9 1.8E-06 4E-11 75.9 22.7 219 86-333 27-246 (694)
114 KOG3060 Uncharacterized conser 98.8 6.1E-06 1.3E-10 61.2 21.0 187 101-297 26-220 (289)
115 PF12854 PPR_1: PPR repeat 98.8 5.9E-09 1.3E-13 52.5 3.8 32 298-329 2-33 (34)
116 KOG3081 Vesicle coat complex C 98.8 9.5E-06 2.1E-10 60.6 21.6 250 60-332 16-271 (299)
117 PRK15359 type III secretion sy 98.8 8.8E-07 1.9E-11 62.2 15.2 95 201-297 27-121 (144)
118 PF12854 PPR_1: PPR repeat 98.8 1.1E-08 2.3E-13 51.5 3.7 31 83-113 3-33 (34)
119 KOG1914 mRNA cleavage and poly 98.8 5.6E-05 1.2E-09 62.4 29.0 132 198-331 366-500 (656)
120 KOG0548 Molecular co-chaperone 98.8 2.8E-05 6E-10 63.9 24.2 215 95-315 232-471 (539)
121 PRK14720 transcript cleavage f 98.8 6.5E-06 1.4E-10 73.5 22.3 232 51-314 30-268 (906)
122 TIGR02552 LcrH_SycD type III s 98.7 7.7E-07 1.7E-11 62.2 13.7 109 4-116 6-114 (135)
123 KOG3785 Uncharacterized conser 98.7 2.2E-05 4.9E-10 61.3 21.9 185 24-227 29-214 (557)
124 KOG3060 Uncharacterized conser 98.7 3.8E-05 8.2E-10 57.1 21.5 188 30-227 25-220 (289)
125 TIGR02552 LcrH_SycD type III s 98.7 3.1E-06 6.8E-11 59.1 14.6 111 39-152 5-115 (135)
126 COG4783 Putative Zn-dependent 98.6 6.4E-05 1.4E-09 61.3 22.8 209 24-262 244-454 (484)
127 COG4783 Putative Zn-dependent 98.6 0.00011 2.4E-09 59.9 24.1 239 24-297 209-454 (484)
128 KOG0985 Vesicle coat protein c 98.6 0.0001 2.2E-09 65.5 24.1 83 88-184 1105-1187(1666)
129 KOG3616 Selective LIM binding 98.6 1.6E-05 3.5E-10 68.0 18.4 108 205-325 739-846 (1636)
130 PF09976 TPR_21: Tetratricopep 98.6 9.9E-06 2.2E-10 57.2 15.0 126 200-329 14-144 (145)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 6.2E-06 1.3E-10 67.3 15.5 122 203-330 174-295 (395)
132 KOG3617 WD40 and TPR repeat-co 98.6 0.0001 2.2E-09 64.1 22.8 286 16-329 756-1106(1416)
133 KOG1127 TPR repeat-containing 98.5 3.3E-05 7.2E-10 68.2 19.8 165 16-190 491-657 (1238)
134 KOG3617 WD40 and TPR repeat-co 98.5 5.4E-05 1.2E-09 65.7 20.6 230 26-295 737-994 (1416)
135 KOG0985 Vesicle coat protein c 98.5 0.0007 1.5E-08 60.5 28.1 278 15-330 982-1306(1666)
136 TIGR00756 PPR pentatricopeptid 98.5 3E-07 6.6E-12 47.0 4.4 34 305-338 2-35 (35)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.1E-05 2.4E-10 65.8 15.1 126 164-295 170-295 (395)
138 PF09976 TPR_21: Tetratricopep 98.5 1.8E-05 3.8E-10 55.9 14.4 128 17-148 12-144 (145)
139 PF13812 PPR_3: Pentatricopept 98.4 4.8E-07 1E-11 45.9 4.3 33 304-336 2-34 (34)
140 KOG2053 Mitochondrial inherita 98.4 0.00091 2E-08 58.9 31.4 224 27-263 19-256 (932)
141 KOG2053 Mitochondrial inherita 98.4 0.00069 1.5E-08 59.6 25.3 223 63-298 20-256 (932)
142 KOG3616 Selective LIM binding 98.4 9.4E-05 2E-09 63.6 19.7 109 129-256 739-847 (1636)
143 PF10037 MRP-S27: Mitochondria 98.4 1.2E-05 2.7E-10 65.9 13.7 123 194-316 62-186 (429)
144 PF10037 MRP-S27: Mitochondria 98.4 3.9E-05 8.4E-10 63.1 15.9 121 119-243 63-183 (429)
145 PRK02603 photosystem I assembl 98.4 3.1E-05 6.7E-10 56.5 14.0 96 6-102 24-121 (172)
146 PF13812 PPR_3: Pentatricopept 98.4 9.2E-07 2E-11 44.8 4.1 33 18-50 2-34 (34)
147 TIGR00756 PPR pentatricopeptid 98.4 8.2E-07 1.8E-11 45.4 3.9 33 19-51 2-34 (35)
148 PF08579 RPM2: Mitochondrial r 98.3 1.1E-05 2.4E-10 51.9 9.1 77 22-98 30-115 (120)
149 cd00189 TPR Tetratricopeptide 98.3 2.7E-05 5.8E-10 50.3 11.1 94 236-331 3-96 (100)
150 cd00189 TPR Tetratricopeptide 98.3 2.7E-05 5.9E-10 50.3 10.9 96 19-116 2-97 (100)
151 TIGR02795 tol_pal_ybgF tol-pal 98.3 6.2E-05 1.3E-09 51.1 13.0 101 18-118 3-107 (119)
152 PF05843 Suf: Suppressor of fo 98.3 6.5E-05 1.4E-09 59.3 14.4 130 165-297 3-136 (280)
153 KOG1127 TPR repeat-containing 98.2 0.0011 2.4E-08 59.1 22.2 182 103-296 474-658 (1238)
154 TIGR02795 tol_pal_ybgF tol-pal 98.2 7.4E-05 1.6E-09 50.7 12.3 94 239-332 8-105 (119)
155 PF12895 Apc3: Anaphase-promot 98.2 8.1E-06 1.8E-10 51.5 6.3 81 246-328 2-83 (84)
156 PRK10866 outer membrane biogen 98.2 0.00072 1.6E-08 52.1 18.1 184 51-260 31-239 (243)
157 PLN03088 SGT1, suppressor of 98.2 0.0001 2.2E-09 60.5 13.9 95 21-117 6-100 (356)
158 PRK15363 pathogenicity island 98.2 6.4E-05 1.4E-09 52.3 10.7 98 53-152 36-133 (157)
159 PF12895 Apc3: Anaphase-promot 98.1 8.7E-06 1.9E-10 51.3 6.0 79 31-111 3-82 (84)
160 KOG0553 TPR repeat-containing 98.1 2.4E-05 5.1E-10 59.7 9.1 102 206-311 89-190 (304)
161 PLN03088 SGT1, suppressor of 98.1 0.00018 4E-09 58.9 14.5 86 209-296 13-98 (356)
162 PRK15363 pathogenicity island 98.1 0.0002 4.3E-09 49.9 12.3 97 199-297 36-132 (157)
163 PF01535 PPR: PPR repeat; Int 98.1 4.4E-06 9.6E-11 41.2 3.2 29 305-333 2-30 (31)
164 PF08579 RPM2: Mitochondrial r 98.1 0.0001 2.2E-09 47.7 9.9 71 244-314 36-115 (120)
165 PRK02603 photosystem I assembl 98.1 0.00045 9.8E-09 50.4 15.0 82 201-283 38-121 (172)
166 PRK10153 DNA-binding transcrip 98.1 0.00049 1.1E-08 59.1 17.1 143 193-341 332-489 (517)
167 PF05843 Suf: Suppressor of fo 98.1 0.00031 6.8E-09 55.5 14.4 130 89-227 3-136 (280)
168 PF14938 SNAP: Soluble NSF att 98.1 0.0013 2.9E-08 52.2 18.0 25 202-226 159-183 (282)
169 CHL00033 ycf3 photosystem I as 98.1 0.00019 4.2E-09 52.1 12.3 94 198-292 35-137 (168)
170 PRK10866 outer membrane biogen 98.0 0.0031 6.6E-08 48.7 21.2 60 92-152 37-99 (243)
171 KOG0550 Molecular chaperone (D 98.0 0.0031 6.7E-08 50.8 18.9 266 20-297 52-350 (486)
172 PF14938 SNAP: Soluble NSF att 98.0 0.00062 1.4E-08 54.0 15.5 198 54-255 37-256 (282)
173 CHL00033 ycf3 photosystem I as 98.0 0.00021 4.6E-09 51.9 11.9 65 17-81 35-101 (168)
174 KOG1914 mRNA cleavage and poly 98.0 0.0061 1.3E-07 51.0 23.4 176 138-321 347-528 (656)
175 PF12688 TPR_5: Tetratrico pep 98.0 0.00089 1.9E-08 44.9 13.6 111 19-133 3-117 (120)
176 PF01535 PPR: PPR repeat; Int 98.0 1.1E-05 2.3E-10 39.7 3.3 29 89-117 2-30 (31)
177 PRK10153 DNA-binding transcrip 98.0 0.00095 2.1E-08 57.4 16.8 135 14-152 334-483 (517)
178 PF06239 ECSIT: Evolutionarily 98.0 0.00022 4.7E-09 52.2 10.6 104 15-137 45-153 (228)
179 KOG0553 TPR repeat-containing 97.9 0.00035 7.6E-09 53.6 12.0 88 26-115 90-177 (304)
180 PF12688 TPR_5: Tetratrico pep 97.9 0.0018 3.9E-08 43.5 14.1 90 205-295 8-102 (120)
181 PF13525 YfiO: Outer membrane 97.9 0.0025 5.5E-08 47.8 16.7 67 16-82 4-72 (203)
182 PF13432 TPR_16: Tetratricopep 97.9 0.0001 2.3E-09 43.7 7.2 58 274-332 3-60 (65)
183 COG4235 Cytochrome c biogenesi 97.9 0.0021 4.5E-08 49.7 15.4 99 197-297 155-256 (287)
184 COG4235 Cytochrome c biogenesi 97.9 0.0008 1.7E-08 51.9 12.9 99 51-151 155-256 (287)
185 PF06239 ECSIT: Evolutionarily 97.9 0.0011 2.4E-08 48.7 12.7 87 196-282 45-152 (228)
186 PF14559 TPR_19: Tetratricopep 97.8 9.9E-05 2.1E-09 44.3 6.4 52 245-297 3-54 (68)
187 PF14559 TPR_19: Tetratricopep 97.8 6.9E-05 1.5E-09 45.0 5.6 52 29-81 3-54 (68)
188 PF13414 TPR_11: TPR repeat; P 97.8 9.9E-05 2.2E-09 44.4 6.2 63 17-80 3-66 (69)
189 KOG0550 Molecular chaperone (D 97.8 0.0048 1E-07 49.7 16.7 265 58-333 55-351 (486)
190 COG4700 Uncharacterized protei 97.8 0.006 1.3E-07 43.6 18.6 102 120-227 87-189 (251)
191 PF13525 YfiO: Outer membrane 97.7 0.0096 2.1E-07 44.7 18.5 47 274-322 147-197 (203)
192 PF13432 TPR_16: Tetratricopep 97.7 0.00019 4E-09 42.6 6.2 57 24-81 4-60 (65)
193 PF03704 BTAD: Bacterial trans 97.7 0.0018 4E-08 45.7 12.1 70 235-305 64-138 (146)
194 PF13414 TPR_11: TPR repeat; P 97.7 0.00043 9.3E-09 41.6 7.7 60 270-330 5-65 (69)
195 COG4700 Uncharacterized protei 97.7 0.0088 1.9E-07 42.8 17.3 158 58-224 62-219 (251)
196 KOG2041 WD40 repeat protein [G 97.7 0.0034 7.3E-08 54.1 14.9 241 49-332 689-952 (1189)
197 PRK10803 tol-pal system protei 97.6 0.0025 5.5E-08 49.6 12.3 97 199-297 144-246 (263)
198 KOG1130 Predicted G-alpha GTPa 97.6 0.0011 2.3E-08 53.4 10.2 133 199-331 196-343 (639)
199 COG3898 Uncharacterized membra 97.6 0.029 6.2E-07 45.2 25.5 293 20-332 85-392 (531)
200 KOG1130 Predicted G-alpha GTPa 97.5 0.0017 3.7E-08 52.3 10.5 270 24-295 24-342 (639)
201 PRK15331 chaperone protein Sic 97.5 0.0042 9.1E-08 43.7 11.1 94 20-115 40-133 (165)
202 PRK10803 tol-pal system protei 97.5 0.0047 1E-07 48.1 12.5 99 90-192 146-246 (263)
203 COG3898 Uncharacterized membra 97.5 0.039 8.4E-07 44.5 28.5 253 27-297 130-392 (531)
204 PF13281 DUF4071: Domain of un 97.4 0.039 8.4E-07 45.0 17.0 31 197-227 304-334 (374)
205 PF13371 TPR_9: Tetratricopept 97.4 0.0014 3.1E-08 39.8 6.8 56 25-81 3-58 (73)
206 PF13371 TPR_9: Tetratricopept 97.4 0.0019 4E-08 39.3 7.3 54 242-296 4-57 (73)
207 KOG1538 Uncharacterized conser 97.4 0.029 6.3E-07 48.3 16.1 87 19-112 558-657 (1081)
208 PF04840 Vps16_C: Vps16, C-ter 97.3 0.06 1.3E-06 43.4 24.8 106 200-325 179-284 (319)
209 KOG2041 WD40 repeat protein [G 97.3 0.096 2.1E-06 45.7 20.1 119 15-147 690-821 (1189)
210 PRK15331 chaperone protein Sic 97.3 0.019 4.2E-07 40.5 12.4 91 205-297 44-134 (165)
211 KOG2796 Uncharacterized conser 97.3 0.049 1.1E-06 41.5 19.7 185 99-307 134-323 (366)
212 PF03704 BTAD: Bacterial trans 97.3 0.032 7E-07 39.4 16.6 71 200-271 64-139 (146)
213 PF13281 DUF4071: Domain of un 97.3 0.074 1.6E-06 43.5 20.5 169 162-332 140-334 (374)
214 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.014 3E-07 48.3 12.9 66 14-81 72-141 (453)
215 PF12921 ATP13: Mitochondrial 97.2 0.012 2.6E-07 40.0 10.1 96 121-242 1-97 (126)
216 PF13424 TPR_12: Tetratricopep 97.1 0.00083 1.8E-08 41.5 4.0 68 123-191 6-74 (78)
217 PF12921 ATP13: Mitochondrial 97.1 0.015 3.2E-07 39.6 10.0 51 264-314 48-99 (126)
218 PF13424 TPR_12: Tetratricopep 97.1 0.0034 7.4E-08 38.7 6.5 26 235-260 7-32 (78)
219 PF07079 DUF1347: Protein of u 97.0 0.15 3.2E-06 42.3 27.8 297 21-329 132-521 (549)
220 PF10300 DUF3808: Protein of u 97.0 0.16 3.4E-06 43.7 17.4 163 166-331 191-375 (468)
221 COG4785 NlpI Lipoprotein NlpI, 96.9 0.094 2E-06 38.8 13.6 68 13-81 95-162 (297)
222 COG4105 ComL DNA uptake lipopr 96.9 0.11 2.5E-06 39.5 18.5 53 64-116 46-100 (254)
223 PF10300 DUF3808: Protein of u 96.8 0.093 2E-06 45.1 14.8 165 128-295 194-374 (468)
224 KOG0543 FKBP-type peptidyl-pro 96.8 0.06 1.3E-06 43.7 12.3 96 234-332 258-355 (397)
225 PF04053 Coatomer_WDAD: Coatom 96.7 0.11 2.4E-06 44.0 14.0 159 130-328 269-427 (443)
226 KOG0543 FKBP-type peptidyl-pro 96.7 0.062 1.4E-06 43.6 11.7 126 170-297 215-355 (397)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.11 2.3E-06 43.4 13.2 66 50-116 73-141 (453)
228 KOG2610 Uncharacterized conser 96.6 0.098 2.1E-06 41.5 12.2 153 175-330 115-274 (491)
229 PF04053 Coatomer_WDAD: Coatom 96.6 0.15 3.3E-06 43.2 14.5 130 54-222 297-426 (443)
230 KOG2796 Uncharacterized conser 96.6 0.22 4.8E-06 38.2 23.1 137 199-336 178-319 (366)
231 PF08631 SPO22: Meiosis protei 96.6 0.28 6E-06 39.0 22.9 227 99-330 5-273 (278)
232 PF04840 Vps16_C: Vps16, C-ter 96.6 0.31 6.7E-06 39.4 25.4 111 164-294 178-288 (319)
233 PF13428 TPR_14: Tetratricopep 96.5 0.011 2.3E-07 31.6 4.7 40 18-58 2-41 (44)
234 PF09205 DUF1955: Domain of un 96.5 0.15 3.2E-06 34.5 13.1 65 234-299 87-151 (161)
235 KOG1538 Uncharacterized conser 96.5 0.54 1.2E-05 41.0 16.7 201 40-262 623-846 (1081)
236 COG3118 Thioredoxin domain-con 96.4 0.31 6.6E-06 38.1 16.2 51 28-79 145-195 (304)
237 PF09205 DUF1955: Domain of un 96.4 0.15 3.2E-06 34.5 14.6 139 99-265 14-152 (161)
238 PF13512 TPR_18: Tetratricopep 96.4 0.18 3.9E-06 34.9 11.9 56 207-262 19-76 (142)
239 COG1729 Uncharacterized protei 96.4 0.19 4.1E-06 38.8 12.2 97 200-297 144-244 (262)
240 KOG1941 Acetylcholine receptor 96.4 0.29 6.3E-06 39.4 13.5 56 204-259 128-188 (518)
241 COG3118 Thioredoxin domain-con 96.3 0.36 7.7E-06 37.8 16.6 145 129-282 141-286 (304)
242 PF13512 TPR_18: Tetratricopep 96.3 0.2 4.3E-06 34.6 11.8 88 15-102 8-97 (142)
243 COG1729 Uncharacterized protei 96.3 0.14 3.1E-06 39.4 11.1 99 124-227 144-244 (262)
244 KOG1585 Protein required for f 96.2 0.36 7.9E-06 36.6 15.4 207 53-292 32-251 (308)
245 KOG1585 Protein required for f 96.2 0.4 8.6E-06 36.4 15.4 206 88-326 32-250 (308)
246 PF08631 SPO22: Meiosis protei 96.1 0.54 1.2E-05 37.4 23.8 18 28-45 4-21 (278)
247 KOG3941 Intermediate in Toll s 96.0 0.086 1.9E-06 40.7 8.7 105 15-138 65-174 (406)
248 COG3629 DnrI DNA-binding trans 96.0 0.14 3E-06 40.0 10.0 77 235-312 155-236 (280)
249 KOG3941 Intermediate in Toll s 96.0 0.12 2.6E-06 39.9 9.3 34 250-283 140-173 (406)
250 PF13428 TPR_14: Tetratricopep 96.0 0.044 9.5E-07 29.3 5.4 23 239-261 7-29 (44)
251 KOG1550 Extracellular protein 95.9 1.1 2.4E-05 39.7 17.0 180 138-333 228-427 (552)
252 KOG2610 Uncharacterized conser 95.9 0.51 1.1E-05 37.6 12.8 153 63-224 114-273 (491)
253 KOG4555 TPR repeat-containing 95.9 0.31 6.8E-06 32.9 11.1 93 24-117 50-145 (175)
254 PF10602 RPN7: 26S proteasome 95.8 0.23 5.1E-06 36.2 10.4 100 53-152 37-143 (177)
255 KOG1941 Acetylcholine receptor 95.8 0.55 1.2E-05 37.9 12.7 237 24-261 13-274 (518)
256 KOG4555 TPR repeat-containing 95.8 0.36 7.7E-06 32.7 10.1 92 206-298 51-145 (175)
257 COG4105 ComL DNA uptake lipopr 95.7 0.66 1.4E-05 35.6 20.7 187 87-297 35-233 (254)
258 PRK11906 transcriptional regul 95.7 1.1 2.3E-05 37.8 16.4 81 70-152 322-402 (458)
259 COG5107 RNA14 Pre-mRNA 3'-end 95.7 1 2.2E-05 37.6 22.1 133 122-262 397-531 (660)
260 PF04184 ST7: ST7 protein; In 95.6 1.2 2.6E-05 37.8 16.4 165 22-206 173-339 (539)
261 KOG2114 Vacuolar assembly/sort 95.6 1.6 3.4E-05 39.5 15.7 178 20-224 337-516 (933)
262 COG3629 DnrI DNA-binding trans 95.6 0.25 5.5E-06 38.7 10.0 80 52-132 153-237 (280)
263 KOG2280 Vacuolar assembly/sort 95.5 1.7 3.7E-05 38.8 20.7 88 22-112 442-532 (829)
264 smart00299 CLH Clathrin heavy 95.5 0.53 1.1E-05 32.9 15.3 84 168-259 12-95 (140)
265 PRK11906 transcriptional regul 95.4 1.4 3E-05 37.2 16.7 159 164-327 252-431 (458)
266 COG1747 Uncharacterized N-term 95.3 1.6 3.4E-05 37.2 20.6 183 10-205 59-246 (711)
267 PF09613 HrpB1_HrpK: Bacterial 95.3 0.68 1.5E-05 32.8 11.4 112 206-324 18-130 (160)
268 PF13176 TPR_7: Tetratricopept 95.3 0.056 1.2E-06 27.3 4.0 26 305-330 1-26 (36)
269 PF07035 Mic1: Colon cancer-as 95.2 0.78 1.7E-05 32.9 14.5 137 183-333 14-150 (167)
270 COG4649 Uncharacterized protei 95.2 0.77 1.7E-05 32.9 13.3 133 88-227 60-196 (221)
271 PF13170 DUF4003: Protein of u 95.2 1.3 2.8E-05 35.5 20.0 136 103-243 78-227 (297)
272 COG5107 RNA14 Pre-mRNA 3'-end 95.2 1.6 3.5E-05 36.5 21.3 145 163-313 397-545 (660)
273 PF04184 ST7: ST7 protein; In 95.1 1.8 3.9E-05 36.8 16.8 78 233-310 259-338 (539)
274 PF10602 RPN7: 26S proteasome 95.1 0.44 9.6E-06 34.8 9.7 98 17-114 36-140 (177)
275 PF13176 TPR_7: Tetratricopept 95.0 0.062 1.3E-06 27.2 3.7 24 20-43 2-25 (36)
276 KOG1550 Extracellular protein 95.0 2.4 5.2E-05 37.6 22.0 178 68-263 228-427 (552)
277 PF07035 Mic1: Colon cancer-as 95.0 0.91 2E-05 32.6 15.5 135 37-191 14-148 (167)
278 PF13431 TPR_17: Tetratricopep 94.9 0.047 1E-06 27.2 3.0 31 5-37 3-33 (34)
279 KOG2114 Vacuolar assembly/sort 94.9 3 6.4E-05 37.9 15.2 217 16-259 282-516 (933)
280 COG4649 Uncharacterized protei 94.8 1 2.2E-05 32.3 13.5 136 16-152 58-197 (221)
281 smart00299 CLH Clathrin heavy 94.6 1 2.2E-05 31.5 16.2 14 101-114 21-34 (140)
282 PF13170 DUF4003: Protein of u 94.6 1.9 4.2E-05 34.6 20.3 132 179-312 78-226 (297)
283 PF00515 TPR_1: Tetratricopept 94.5 0.1 2.2E-06 25.8 3.7 28 18-45 2-29 (34)
284 COG0457 NrfG FOG: TPR repeat [ 94.4 1.7 3.6E-05 33.1 28.2 223 66-297 37-265 (291)
285 COG0457 NrfG FOG: TPR repeat [ 94.4 1.7 3.6E-05 33.0 28.3 225 31-262 37-265 (291)
286 PF13431 TPR_17: Tetratricopep 94.4 0.064 1.4E-06 26.7 2.7 20 268-287 13-32 (34)
287 KOG4570 Uncharacterized conser 94.2 1.8 4E-05 34.3 11.3 103 193-297 59-164 (418)
288 KOG2280 Vacuolar assembly/sort 94.0 4.3 9.3E-05 36.4 24.7 142 46-191 426-574 (829)
289 PF07719 TPR_2: Tetratricopept 94.0 0.15 3.2E-06 25.1 3.7 28 18-45 2-29 (34)
290 PF02284 COX5A: Cytochrome c o 93.9 0.58 1.3E-05 30.0 6.8 60 181-241 28-87 (108)
291 cd00923 Cyt_c_Oxidase_Va Cytoc 93.9 0.69 1.5E-05 29.4 7.0 46 181-226 25-70 (103)
292 PF07079 DUF1347: Protein of u 93.9 3.5 7.5E-05 34.7 25.5 252 3-273 247-530 (549)
293 TIGR02561 HrpB1_HrpK type III 93.8 1.5 3.3E-05 30.6 10.4 52 209-262 21-73 (153)
294 KOG1920 IkappaB kinase complex 93.8 6.3 0.00014 37.5 20.1 110 166-295 942-1053(1265)
295 KOG1920 IkappaB kinase complex 93.4 7.4 0.00016 37.1 21.0 84 201-296 942-1027(1265)
296 PF02284 COX5A: Cytochrome c o 93.4 1.3 2.9E-05 28.5 8.6 66 16-81 7-74 (108)
297 PF09613 HrpB1_HrpK: Bacterial 93.2 2.2 4.7E-05 30.4 12.7 114 23-143 16-130 (160)
298 PF00515 TPR_1: Tetratricopept 93.2 0.33 7.2E-06 23.9 4.3 28 305-332 3-30 (34)
299 COG2976 Uncharacterized protei 93.2 2.5 5.5E-05 31.1 12.7 91 241-333 97-189 (207)
300 PF07719 TPR_2: Tetratricopept 92.9 0.4 8.6E-06 23.5 4.3 28 305-332 3-30 (34)
301 PRK15180 Vi polysaccharide bio 92.8 5.5 0.00012 33.9 13.2 119 100-228 302-421 (831)
302 PF11207 DUF2989: Protein of u 92.7 1.9 4E-05 32.0 8.8 41 247-287 154-197 (203)
303 PRK15180 Vi polysaccharide bio 92.6 5.8 0.00013 33.7 12.8 126 23-152 295-421 (831)
304 KOG4570 Uncharacterized conser 92.6 3.5 7.6E-05 32.9 10.5 102 121-227 63-164 (418)
305 KOG4648 Uncharacterized conser 92.4 1.3 2.7E-05 35.6 8.1 93 22-116 102-194 (536)
306 PRK11619 lytic murein transgly 92.4 8.4 0.00018 35.0 24.5 252 56-330 103-373 (644)
307 PF13174 TPR_6: Tetratricopept 92.4 0.37 7.9E-06 23.4 3.7 25 308-332 5-29 (33)
308 PF11207 DUF2989: Protein of u 92.1 2.6 5.6E-05 31.3 9.0 79 173-253 117-198 (203)
309 PF13374 TPR_10: Tetratricopep 91.9 0.42 9.2E-06 24.7 3.8 27 18-44 3-29 (42)
310 PF13374 TPR_10: Tetratricopep 91.8 0.57 1.2E-05 24.2 4.3 28 304-331 3-30 (42)
311 KOG0276 Vesicle coat complex C 91.8 1.9 4.1E-05 37.5 9.0 132 124-294 616-747 (794)
312 PF00637 Clathrin: Region in C 91.8 0.079 1.7E-06 37.2 1.0 85 204-295 13-97 (143)
313 KOG4234 TPR repeat-containing 91.7 3.4 7.4E-05 30.6 9.0 92 24-116 102-197 (271)
314 cd00923 Cyt_c_Oxidase_Va Cytoc 91.3 2.6 5.6E-05 26.9 8.7 62 32-94 22-83 (103)
315 PF02259 FAT: FAT domain; Int 91.3 7.4 0.00016 32.2 22.2 65 162-226 145-212 (352)
316 KOG1258 mRNA processing protei 91.3 9.6 0.00021 33.4 24.1 296 20-323 82-420 (577)
317 PF07163 Pex26: Pex26 protein; 91.2 3.8 8.2E-05 32.1 9.3 88 58-145 89-181 (309)
318 TIGR03504 FimV_Cterm FimV C-te 91.0 0.54 1.2E-05 25.0 3.4 25 309-333 5-29 (44)
319 PF02259 FAT: FAT domain; Int 90.9 8.2 0.00018 31.9 20.8 67 196-262 144-213 (352)
320 PF00637 Clathrin: Region in C 90.7 0.14 2.9E-06 36.0 1.4 83 23-112 13-95 (143)
321 COG2909 MalT ATP-dependent tra 90.6 14 0.00031 34.2 24.0 199 132-336 425-651 (894)
322 PF13929 mRNA_stabil: mRNA sta 90.5 7.4 0.00016 30.8 16.2 134 178-311 143-286 (292)
323 COG1747 Uncharacterized N-term 90.3 11 0.00024 32.5 24.2 63 86-151 65-127 (711)
324 PF13181 TPR_8: Tetratricopept 90.3 1.1 2.4E-05 21.8 4.3 28 305-332 3-30 (34)
325 KOG0276 Vesicle coat complex C 90.2 12 0.00027 32.9 12.2 29 86-114 665-693 (794)
326 PF13181 TPR_8: Tetratricopept 90.0 0.96 2.1E-05 22.1 3.9 27 19-45 3-29 (34)
327 PF07721 TPR_4: Tetratricopept 90.0 0.58 1.2E-05 21.5 2.7 23 19-41 3-25 (26)
328 TIGR03504 FimV_Cterm FimV C-te 89.8 1.1 2.3E-05 23.9 4.0 23 274-296 5-27 (44)
329 TIGR02561 HrpB1_HrpK type III 89.6 5.6 0.00012 27.9 11.3 54 27-82 20-74 (153)
330 COG4785 NlpI Lipoprotein NlpI, 89.5 7.6 0.00016 29.3 15.7 159 122-298 99-267 (297)
331 KOG4234 TPR repeat-containing 89.4 7.2 0.00016 29.0 9.6 95 206-304 103-202 (271)
332 PF07163 Pex26: Pex26 protein; 89.2 7.6 0.00016 30.5 9.4 87 24-110 90-181 (309)
333 PF04097 Nic96: Nup93/Nic96; 89.2 17 0.00037 33.0 13.3 32 303-337 500-536 (613)
334 KOG4648 Uncharacterized conser 88.9 1.9 4.1E-05 34.7 6.4 90 205-297 104-194 (536)
335 PF13174 TPR_6: Tetratricopept 88.8 0.78 1.7E-05 22.1 3.0 26 20-45 3-28 (33)
336 COG4455 ImpE Protein of avirul 88.5 6 0.00013 29.9 8.2 54 129-189 8-61 (273)
337 COG4455 ImpE Protein of avirul 88.4 5.6 0.00012 30.0 8.0 76 200-276 3-80 (273)
338 PF13929 mRNA_stabil: mRNA sta 88.1 12 0.00025 29.7 15.1 66 118-188 198-263 (292)
339 PF08424 NRDE-2: NRDE-2, neces 87.4 15 0.00032 30.2 14.8 145 4-152 8-184 (321)
340 PF06552 TOM20_plant: Plant sp 87.4 9.3 0.0002 27.9 9.3 29 103-133 96-124 (186)
341 KOG2063 Vacuolar assembly/sort 87.4 26 0.00056 33.0 20.3 115 20-134 507-638 (877)
342 PRK09687 putative lyase; Provi 87.1 14 0.0003 29.6 27.0 235 49-314 34-278 (280)
343 PF14689 SPOB_a: Sensor_kinase 86.4 3.2 6.9E-05 24.1 4.9 29 302-330 22-50 (62)
344 KOG4077 Cytochrome c oxidase, 86.3 7.2 0.00016 26.4 6.8 45 183-227 69-113 (149)
345 COG3947 Response regulator con 86.3 15 0.00033 29.2 15.8 71 200-271 281-356 (361)
346 PF07575 Nucleopor_Nup85: Nup8 85.9 26 0.00056 31.5 12.7 62 197-260 404-465 (566)
347 KOG4077 Cytochrome c oxidase, 85.5 8.6 0.00019 26.1 6.9 43 254-296 70-112 (149)
348 KOG1464 COP9 signalosome, subu 84.6 18 0.00038 28.4 14.7 186 135-324 40-252 (440)
349 KOG0686 COP9 signalosome, subu 84.3 23 0.0005 29.6 14.5 166 54-227 152-333 (466)
350 PF10579 Rapsyn_N: Rapsyn N-te 84.3 6 0.00013 24.2 5.4 46 280-325 18-65 (80)
351 smart00028 TPR Tetratricopepti 84.3 2.8 6E-05 19.3 3.7 27 305-331 3-29 (34)
352 TIGR02508 type_III_yscG type I 83.2 10 0.00022 24.6 7.4 81 30-117 18-98 (115)
353 KOG4507 Uncharacterized conser 82.7 4.2 9.2E-05 35.5 5.9 90 242-332 616-705 (886)
354 COG5159 RPN6 26S proteasome re 82.7 22 0.00048 28.2 12.4 132 208-339 13-165 (421)
355 PRK09687 putative lyase; Provi 82.3 24 0.00052 28.3 28.9 219 85-332 35-263 (280)
356 COG2976 Uncharacterized protei 81.8 19 0.00041 26.8 13.6 93 129-227 96-188 (207)
357 KOG0687 26S proteasome regulat 81.1 28 0.0006 28.3 14.1 132 195-330 67-208 (393)
358 PF08311 Mad3_BUB1_I: Mad3/BUB 79.9 6.8 0.00015 26.8 5.2 60 17-78 65-125 (126)
359 PHA02875 ankyrin repeat protei 79.6 34 0.00074 29.2 10.6 76 63-146 10-89 (413)
360 cd08819 CARD_MDA5_2 Caspase ac 79.6 13 0.00028 23.4 7.1 65 106-182 21-85 (88)
361 PRK10941 hypothetical protein; 79.4 30 0.00064 27.5 10.1 62 90-152 184-245 (269)
362 PF10579 Rapsyn_N: Rapsyn N-te 78.8 11 0.00023 23.2 5.1 43 211-253 19-63 (80)
363 KOG1464 COP9 signalosome, subu 78.5 31 0.00067 27.2 17.7 187 100-288 40-251 (440)
364 PF14689 SPOB_a: Sensor_kinase 77.8 9 0.00019 22.2 4.6 26 125-150 26-51 (62)
365 PRK10564 maltose regulon perip 77.8 5.5 0.00012 31.6 4.7 30 20-49 260-289 (303)
366 KOG3636 Uncharacterized conser 77.1 45 0.00098 28.4 13.7 187 15-209 53-271 (669)
367 PF11846 DUF3366: Domain of un 77.0 21 0.00046 26.6 7.6 32 230-261 141-172 (193)
368 PF13762 MNE1: Mitochondrial s 76.4 24 0.00052 24.8 12.8 99 43-141 28-134 (145)
369 PF11846 DUF3366: Domain of un 76.4 20 0.00043 26.7 7.3 53 245-297 120-173 (193)
370 PF07575 Nucleopor_Nup85: Nup8 75.8 14 0.00031 33.1 7.4 58 89-148 407-464 (566)
371 PF13762 MNE1: Mitochondrial s 75.4 26 0.00055 24.7 8.6 82 19-100 41-128 (145)
372 PF08424 NRDE-2: NRDE-2, neces 74.7 46 0.001 27.3 16.4 119 138-264 47-185 (321)
373 PF04097 Nic96: Nup93/Nic96; 74.5 69 0.0015 29.2 17.6 88 170-262 265-356 (613)
374 KOG1308 Hsp70-interacting prot 74.4 3.1 6.7E-05 33.6 2.6 95 28-124 125-219 (377)
375 PF11848 DUF3368: Domain of un 74.1 12 0.00026 20.3 4.9 34 27-60 12-45 (48)
376 PRK10941 hypothetical protein; 73.0 46 0.00099 26.5 9.9 77 55-132 184-261 (269)
377 PF09670 Cas_Cas02710: CRISPR- 72.9 57 0.0012 27.6 11.0 55 172-227 140-198 (379)
378 PF11663 Toxin_YhaV: Toxin wit 72.6 4.9 0.00011 27.5 2.9 34 173-208 105-138 (140)
379 COG0735 Fur Fe2+/Zn2+ uptake r 72.2 32 0.00068 24.3 8.0 58 42-100 11-68 (145)
380 TIGR02508 type_III_yscG type I 71.9 24 0.00053 22.9 8.0 78 214-298 21-98 (115)
381 PF06552 TOM20_plant: Plant sp 71.7 37 0.00081 24.9 11.1 12 234-245 70-81 (186)
382 KOG4507 Uncharacterized conser 71.2 77 0.0017 28.3 11.6 125 182-309 592-716 (886)
383 KOG0376 Serine-threonine phosp 70.6 12 0.00025 32.0 5.1 108 21-133 8-116 (476)
384 COG3947 Response regulator con 70.5 54 0.0012 26.3 16.8 61 269-330 280-340 (361)
385 cd00280 TRFH Telomeric Repeat 70.3 41 0.00088 24.8 7.5 48 214-261 85-139 (200)
386 KOG3364 Membrane protein invol 70.2 34 0.00073 23.8 9.2 66 231-297 30-100 (149)
387 PRK10564 maltose regulon perip 70.1 14 0.00029 29.6 5.2 42 85-126 254-296 (303)
388 COG0735 Fur Fe2+/Zn2+ uptake r 70.1 36 0.00077 24.0 7.8 62 220-282 8-69 (145)
389 KOG0890 Protein kinase of the 69.9 1.6E+02 0.0035 31.5 21.2 62 233-297 1670-1731(2382)
390 KOG1258 mRNA processing protei 69.7 82 0.0018 28.0 24.9 279 2-289 100-421 (577)
391 COG5108 RPO41 Mitochondrial DN 69.4 46 0.001 30.1 8.5 90 203-295 33-130 (1117)
392 PF09454 Vps23_core: Vps23 cor 69.1 14 0.00031 21.7 4.0 29 54-82 10-38 (65)
393 KOG0376 Serine-threonine phosp 68.4 21 0.00046 30.5 6.2 56 24-80 45-100 (476)
394 smart00777 Mad3_BUB1_I Mad3/BU 67.9 14 0.0003 25.3 4.3 44 34-77 80-124 (125)
395 PF11848 DUF3368: Domain of un 67.9 18 0.00038 19.7 5.1 28 246-273 15-42 (48)
396 KOG0890 Protein kinase of the 66.8 1.9E+02 0.004 31.1 25.7 294 22-333 1388-1732(2382)
397 PF11663 Toxin_YhaV: Toxin wit 66.8 9.2 0.0002 26.3 3.2 21 247-267 109-129 (140)
398 PRK12798 chemotaxis protein; R 66.4 82 0.0018 26.8 19.9 50 101-150 126-176 (421)
399 PF12926 MOZART2: Mitotic-spin 66.1 30 0.00065 21.7 7.4 42 38-79 29-70 (88)
400 PF11817 Foie-gras_1: Foie gra 66.1 37 0.00079 26.6 7.0 60 165-224 180-244 (247)
401 KOG0686 COP9 signalosome, subu 66.0 82 0.0018 26.7 14.3 167 17-192 150-333 (466)
402 PF10366 Vps39_1: Vacuolar sor 65.6 35 0.00076 22.6 5.8 27 270-296 41-67 (108)
403 PF09868 DUF2095: Uncharacteri 65.5 34 0.00074 22.7 5.4 25 23-47 67-91 (128)
404 PF09986 DUF2225: Uncharacteri 65.2 60 0.0013 24.8 9.9 22 311-332 173-194 (214)
405 PF12862 Apc5: Anaphase-promot 65.1 33 0.00072 21.9 6.7 23 239-261 47-69 (94)
406 KOG4567 GTPase-activating prot 65.0 52 0.0011 26.6 7.3 44 218-261 263-306 (370)
407 COG0790 FOG: TPR repeat, SEL1 64.7 72 0.0016 25.6 22.4 150 176-335 90-269 (292)
408 COG2909 MalT ATP-dependent tra 64.1 1.3E+02 0.0029 28.4 25.9 226 98-328 426-684 (894)
409 KOG1839 Uncharacterized protei 63.9 1.2E+02 0.0025 30.1 10.5 167 20-186 935-1122(1236)
410 PF12862 Apc5: Anaphase-promot 63.9 35 0.00077 21.7 6.5 54 244-297 9-70 (94)
411 COG5108 RPO41 Mitochondrial DN 63.6 1E+02 0.0022 28.1 9.5 48 127-178 33-80 (1117)
412 PF04190 DUF410: Protein of un 63.5 73 0.0016 25.2 14.8 66 267-332 89-170 (260)
413 KOG2908 26S proteasome regulat 63.5 83 0.0018 25.9 10.4 52 210-261 87-143 (380)
414 PRK11619 lytic murein transgly 63.3 1.3E+02 0.0027 27.8 30.8 58 201-259 315-372 (644)
415 COG0790 FOG: TPR repeat, SEL1 63.2 77 0.0017 25.4 23.6 116 137-264 92-222 (292)
416 KOG1308 Hsp70-interacting prot 62.8 5.2 0.00011 32.4 1.7 118 208-330 124-242 (377)
417 PF14853 Fis1_TPR_C: Fis1 C-te 62.5 25 0.00055 19.6 5.7 31 21-53 5-35 (53)
418 PRK11639 zinc uptake transcrip 61.9 55 0.0012 23.8 6.7 60 43-103 17-76 (169)
419 KOG2422 Uncharacterized conser 61.3 1.2E+02 0.0026 27.1 15.8 138 14-151 281-448 (665)
420 KOG2066 Vacuolar assembly/sort 61.1 1.4E+02 0.0031 27.8 23.1 263 24-326 363-670 (846)
421 PF11817 Foie-gras_1: Foie gra 60.7 72 0.0016 25.0 7.7 20 240-259 185-204 (247)
422 COG5187 RPN7 26S proteasome re 60.6 87 0.0019 25.2 12.7 101 87-191 115-220 (412)
423 KOG4642 Chaperone-dependent E3 60.0 81 0.0017 24.6 11.1 120 172-295 19-144 (284)
424 PF09477 Type_III_YscG: Bacter 59.6 49 0.0011 21.9 9.5 82 29-117 18-99 (116)
425 KOG4567 GTPase-activating prot 59.3 96 0.0021 25.2 7.9 70 253-327 263-342 (370)
426 KOG2063 Vacuolar assembly/sort 59.2 1.7E+02 0.0037 28.0 16.1 120 90-209 507-637 (877)
427 cd07153 Fur_like Ferric uptake 58.6 39 0.00085 22.5 5.3 47 23-69 6-52 (116)
428 KOG4642 Chaperone-dependent E3 58.1 88 0.0019 24.4 11.0 79 66-148 24-104 (284)
429 PRK09857 putative transposase; 57.9 1E+02 0.0022 25.0 9.7 26 310-335 247-272 (292)
430 KOG2471 TPR repeat-containing 57.6 1.3E+02 0.0029 26.3 10.5 108 171-280 248-381 (696)
431 PF09477 Type_III_YscG: Bacter 57.4 54 0.0012 21.7 9.6 80 212-298 20-99 (116)
432 cd08819 CARD_MDA5_2 Caspase ac 57.3 47 0.001 21.0 7.4 38 99-141 48-85 (88)
433 KOG1586 Protein required for f 56.9 91 0.002 24.2 19.0 17 27-43 24-40 (288)
434 cd00280 TRFH Telomeric Repeat 56.4 80 0.0017 23.4 10.0 21 95-115 119-139 (200)
435 KOG0687 26S proteasome regulat 56.2 1.1E+02 0.0024 25.1 10.8 105 229-335 66-176 (393)
436 PF01475 FUR: Ferric uptake re 55.5 38 0.00083 22.8 4.9 47 21-67 11-57 (120)
437 COG5187 RPN7 26S proteasome re 55.3 1.1E+02 0.0024 24.6 12.9 96 233-330 115-219 (412)
438 KOG2471 TPR repeat-containing 55.1 1.5E+02 0.0032 26.1 10.0 112 130-244 248-380 (696)
439 PF02184 HAT: HAT (Half-A-TPR) 54.9 25 0.00055 17.2 3.1 24 32-57 2-25 (32)
440 PF04090 RNA_pol_I_TF: RNA pol 54.2 92 0.002 23.4 7.4 49 19-68 43-92 (199)
441 COG5191 Uncharacterized conser 53.1 28 0.00061 28.1 4.2 84 8-93 98-182 (435)
442 COG4003 Uncharacterized protei 52.7 53 0.0012 20.3 5.0 25 23-47 37-61 (98)
443 PF08311 Mad3_BUB1_I: Mad3/BUB 52.4 73 0.0016 21.8 10.2 43 286-328 81-124 (126)
444 cd07153 Fur_like Ferric uptake 52.0 68 0.0015 21.3 5.7 36 102-137 15-50 (116)
445 PF01475 FUR: Ferric uptake re 51.7 68 0.0015 21.6 5.6 43 58-100 13-55 (120)
446 KOG0989 Replication factor C, 51.3 1.3E+02 0.0029 24.5 9.7 38 224-263 201-238 (346)
447 PF09670 Cas_Cas02710: CRISPR- 50.7 1.6E+02 0.0034 25.1 11.3 49 210-259 143-195 (379)
448 PF10366 Vps39_1: Vacuolar sor 50.4 72 0.0016 21.1 7.7 28 234-261 40-67 (108)
449 smart00386 HAT HAT (Half-A-TPR 50.3 27 0.00058 16.1 3.9 12 284-295 3-14 (33)
450 KOG2034 Vacuolar sorting prote 49.5 2.4E+02 0.0052 26.9 24.1 51 23-79 364-416 (911)
451 PRK09857 putative transposase; 49.1 1.4E+02 0.0031 24.2 10.1 66 236-302 209-274 (292)
452 PF15297 CKAP2_C: Cytoskeleton 47.6 1.5E+02 0.0032 24.6 7.4 45 89-133 142-186 (353)
453 PRK13800 putative oxidoreducta 46.9 2.8E+02 0.0061 27.0 27.3 248 49-331 632-880 (897)
454 PF03745 DUF309: Domain of unk 46.5 58 0.0013 18.9 5.4 47 279-325 10-61 (62)
455 PRK13342 recombination factor 46.5 1.9E+02 0.0041 24.9 18.6 23 177-199 244-266 (413)
456 PF15297 CKAP2_C: Cytoskeleton 46.1 1.7E+02 0.0038 24.3 9.8 64 214-279 119-186 (353)
457 PF04190 DUF410: Protein of un 46.0 1.5E+02 0.0033 23.5 15.3 26 161-186 88-113 (260)
458 KOG1839 Uncharacterized protei 45.5 3.3E+02 0.0072 27.3 12.1 156 171-326 940-1122(1236)
459 cd00245 Glm_e Coenzyme B12-dep 45.5 64 0.0014 27.7 5.4 46 177-225 25-70 (428)
460 PRK09462 fur ferric uptake reg 45.0 1.1E+02 0.0024 21.6 7.8 58 224-282 8-66 (148)
461 PF04762 IKI3: IKI3 family; I 44.4 3.2E+02 0.0068 26.8 17.9 134 177-329 792-927 (928)
462 PF14561 TPR_20: Tetratricopep 43.4 85 0.0018 19.9 8.9 31 267-297 21-51 (90)
463 PF05944 Phage_term_smal: Phag 43.1 1.1E+02 0.0024 21.2 7.0 98 3-106 35-132 (132)
464 KOG0991 Replication factor C, 43.0 1.6E+02 0.0035 23.0 12.7 102 173-278 169-282 (333)
465 KOG4814 Uncharacterized conser 42.9 2.7E+02 0.0058 25.6 9.0 86 209-296 365-456 (872)
466 PRK14956 DNA polymerase III su 42.6 2.4E+02 0.0052 24.9 10.9 86 248-336 181-281 (484)
467 KOG2659 LisH motif-containing 42.6 1.6E+02 0.0034 22.8 8.7 100 229-328 22-128 (228)
468 PRK11639 zinc uptake transcrip 42.5 1.3E+02 0.0029 21.9 8.1 60 79-139 18-77 (169)
469 PF04090 RNA_pol_I_TF: RNA pol 42.0 1.5E+02 0.0033 22.4 7.3 30 234-263 42-71 (199)
470 KOG2297 Predicted translation 41.9 1.9E+02 0.0042 23.6 14.1 19 269-287 322-340 (412)
471 PRK09462 fur ferric uptake reg 41.9 1.2E+02 0.0027 21.3 8.0 14 69-82 34-47 (148)
472 PF02847 MA3: MA3 domain; Int 41.6 1E+02 0.0022 20.3 8.3 21 204-224 8-28 (113)
473 PF00244 14-3-3: 14-3-3 protei 41.6 1.7E+02 0.0037 22.8 12.1 17 244-260 180-196 (236)
474 PF06855 DUF1250: Protein of u 41.5 58 0.0013 17.5 3.3 40 5-44 3-42 (46)
475 PRK12798 chemotaxis protein; R 41.5 2.3E+02 0.005 24.3 20.3 229 23-266 87-328 (421)
476 KOG3636 Uncharacterized conser 41.3 2.4E+02 0.0051 24.4 14.6 88 191-279 176-271 (669)
477 KOG2297 Predicted translation 41.2 2E+02 0.0043 23.5 15.5 21 233-253 321-341 (412)
478 PF09986 DUF2225: Uncharacteri 41.0 1.6E+02 0.0035 22.5 11.6 64 235-298 120-195 (214)
479 PHA02875 ankyrin repeat protei 40.8 2.3E+02 0.005 24.2 15.7 78 26-111 8-89 (413)
480 COG4259 Uncharacterized protei 40.7 1E+02 0.0022 20.1 6.6 47 104-150 54-100 (121)
481 PF00244 14-3-3: 14-3-3 protei 40.4 1.8E+02 0.0038 22.7 9.7 60 21-80 5-65 (236)
482 PF10345 Cohesin_load: Cohesin 40.4 3E+02 0.0064 25.3 26.3 127 21-148 104-251 (608)
483 PF10475 DUF2450: Protein of u 39.8 2E+02 0.0044 23.2 10.1 24 120-143 195-218 (291)
484 PF02607 B12-binding_2: B12 bi 39.3 83 0.0018 19.0 4.2 32 65-96 14-45 (79)
485 cd08326 CARD_CASP9 Caspase act 39.3 97 0.0021 19.4 6.5 62 36-105 18-79 (84)
486 KOG0292 Vesicle coat complex C 39.0 2.3E+02 0.0051 27.1 8.0 161 22-230 625-785 (1202)
487 PRK14951 DNA polymerase III su 38.8 3.2E+02 0.0069 25.2 10.8 85 214-301 185-283 (618)
488 KOG2396 HAT (Half-A-TPR) repea 38.4 2.8E+02 0.0061 24.5 20.6 235 15-261 313-558 (568)
489 PF07678 A2M_comp: A-macroglob 38.4 1.8E+02 0.004 22.7 6.8 148 182-332 33-221 (246)
490 cd08790 DED_DEDD Death Effecto 38.3 1.1E+02 0.0024 19.8 4.5 57 64-122 36-92 (97)
491 PF11768 DUF3312: Protein of u 38.2 3E+02 0.0064 24.7 11.1 24 126-149 412-435 (545)
492 PF07443 HARP: HepA-related pr 38.0 20 0.00042 20.3 1.0 26 317-342 6-31 (55)
493 PF02847 MA3: MA3 domain; Int 38.0 1.2E+02 0.0026 20.0 7.7 61 20-82 5-67 (113)
494 PF12926 MOZART2: Mitotic-spin 37.8 1.1E+02 0.0023 19.4 8.0 40 255-294 30-69 (88)
495 KOG0991 Replication factor C, 37.6 2E+02 0.0043 22.5 12.6 44 106-151 178-221 (333)
496 PF13934 ELYS: Nuclear pore co 36.9 2E+02 0.0043 22.3 15.7 94 99-209 90-183 (226)
497 PF10345 Cohesin_load: Cohesin 36.9 3.4E+02 0.0073 24.9 30.7 185 4-189 44-251 (608)
498 KOG4521 Nuclear pore complex, 36.7 4.5E+02 0.0097 26.3 13.3 128 124-256 985-1125(1480)
499 PF12796 Ank_2: Ankyrin repeat 36.4 86 0.0019 19.3 4.1 14 325-338 74-87 (89)
500 KOG4814 Uncharacterized conser 36.1 3.5E+02 0.0076 24.9 9.5 96 87-191 355-456 (872)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-59 Score=415.25 Aligned_cols=335 Identities=21% Similarity=0.347 Sum_probs=296.2
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
++|+.|.+.|.. |+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.
T Consensus 458 ~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 458 RVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 578888888887 8888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccc
Q 040261 82 CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA--FGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159 (343)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (343)
|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.+ +
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g------i 610 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN------I 610 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------C
Confidence 8888888888888888888888888888888876 5678888888888888888888888888888888887 7
Q ss_pred cCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040261 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239 (343)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (343)
+|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 88888889999999989999999999988888888888888999999888888999999999988888888888889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 040261 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319 (343)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (343)
+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999888888888888889999999999999999999999888888888999999999889888999
Q ss_pred HHHHHHHHHHHhCCCCCCccccCC
Q 040261 320 EGALSLYSEMLSKGIRPTVVTYNT 343 (343)
Q Consensus 320 ~~a~~~~~~~~~~~~~p~~~t~~~ 343 (343)
++|.+++++|.+.|+.||..+|++
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999988888888888763
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.7e-59 Score=411.99 Aligned_cols=325 Identities=25% Similarity=0.432 Sum_probs=316.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
|+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...+.. +.|+..+|+.++.+|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g----i~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP----IDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999863211 6899999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 040261 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (343)
+.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 040261 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334 (343)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (343)
++++|.+.|++|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCC
Q 040261 335 RPTVVTYNT 343 (343)
Q Consensus 335 ~p~~~t~~~ 343 (343)
.||..||++
T Consensus 751 ~Pd~~Ty~s 759 (1060)
T PLN03218 751 CPNTITYSI 759 (1060)
T ss_pred CCCHHHHHH
Confidence 999999863
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-52 Score=368.46 Aligned_cols=324 Identities=20% Similarity=0.344 Sum_probs=255.5
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
++|++|...++.+|+..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.
T Consensus 108 ~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-- 185 (697)
T PLN03081 108 ELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-- 185 (697)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC--
Confidence 577777776655577778888888888888888888888888887877888888888888888888888888887774
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHH-----------------------------------HH
Q 040261 82 CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT-----------------------------------YT 126 (343)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------------------------------~~ 126 (343)
.||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+ ++
T Consensus 186 --~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 186 --ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred --CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 36777788888888888888888888887776666665554 45
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 040261 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206 (343)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (343)
.++.+|++.|++++|.++|+.|. .++..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMP----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66677777777777777777763 34677788888888888888888888888877788888888888888
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHH
Q 040261 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286 (343)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (343)
+|++.|++++|.+++..|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHH
Confidence 888888888888888888888888888888888888888888888888888774 4677788888888888888888
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCccccCC
Q 040261 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS-KGIRPTVVTYNT 343 (343)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~t~~~ 343 (343)
|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|++
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 888888888888888888888888888888888888888888875 488888888764
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.4e-52 Score=364.28 Aligned_cols=320 Identities=17% Similarity=0.280 Sum_probs=275.8
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
+++..|.+.|.. |+..+|+.++..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 144 ~l~~~m~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 144 AVYWHVESSGFE-PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHhCCC-cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 355566666655 5566666666666666666666666666542 55556666666666666666666666665544
Q ss_pred -----------------------------------CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 040261 82 -----------------------------------CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126 (343)
Q Consensus 82 -----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (343)
|..||..+|+.++.+|++.|++++|.++|++|.. +|..+|+
T Consensus 219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n 294 (697)
T PLN03081 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWN 294 (697)
T ss_pred CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHH
Confidence 4455666778889999999999999999999964 5899999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 040261 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206 (343)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (343)
.++.+|++.|+.++|.++|++|.+.+ +.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.++.
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSG------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 99999999999999999999999988 899999999999999999999999999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHH
Q 040261 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNR 286 (343)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (343)
+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++
T Consensus 369 ~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 9999999999999999985 478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC
Q 040261 287 AKELFVSMES-NGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343 (343)
Q Consensus 287 a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~t~~~ 343 (343)
|.++|+.|.+ .|+.|+..+|+.++++|.+.|++++|.+++++| ++.|+..+|++
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~ 499 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAA 499 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHH
Confidence 9999999986 699999999999999999999999999999876 68899998864
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.1e-50 Score=361.50 Aligned_cols=314 Identities=22% Similarity=0.300 Sum_probs=189.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
+++.+|+.++..|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|.+|.+.|+.||..+|+.++
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 4444555566666666666666666666542 455666666666666666666666666666666666666666666
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
.+|.+.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|.
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----------~~d~~s~n~li~~~~ 365 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----------TKDAVSWTAMISGYE 365 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----------CCCeeeHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666653 244556666666666
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 040261 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (343)
+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666655555555555555555555555555
Q ss_pred HHHHHHHc------------------------------CCCC--------------------------------------
Q 040261 255 LLELMIQI------------------------------GVRP-------------------------------------- 266 (343)
Q Consensus 255 ~~~~~~~~------------------------------~~~~-------------------------------------- 266 (343)
+|++|.+. +++|
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 55443221 1233
Q ss_pred ---------------------------CHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 040261 267 ---------------------------DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319 (343)
Q Consensus 267 ---------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (343)
|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 33445555555555666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHH-hCCCCCCccccC
Q 040261 320 EGALSLYSEML-SKGIRPTVVTYN 342 (343)
Q Consensus 320 ~~a~~~~~~~~-~~~~~p~~~t~~ 342 (343)
++|.++|++|. ..|+.|+..+|+
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHH
Confidence 66666666665 446666655554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-50 Score=361.32 Aligned_cols=315 Identities=24% Similarity=0.421 Sum_probs=264.9
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHH-----------------------------------HHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTY-----------------------------------NILI 59 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~ 59 (343)
++..+|+.++.+|++.|++++|+++|++|...|+.||..+| +.++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 45556666666666666666666666666655555555554 5566
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 040261 60 NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139 (343)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (343)
.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.|+.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 66666677777777777664 35777888888888888888888888888888888889999999999999999999
Q ss_pred HHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHH
Q 040261 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219 (343)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 219 (343)
.+.+++..+.+.+ ..|+..+|+.++.+|++.|++++|.++|+.|.. ||..+|+.++.+|++.|++++|..
T Consensus 306 ~a~~l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 306 LGREMHGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHHHHHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHH
Confidence 9999998888887 789999999999999999999999999999864 688899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCC-
Q 040261 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG- 298 (343)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 298 (343)
+|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.+.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 455 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988887764421
Q ss_pred -----------------------------C--------------------------------------------------
Q 040261 299 -----------------------------C-------------------------------------------------- 299 (343)
Q Consensus 299 -----------------------------~-------------------------------------------------- 299 (343)
+
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 1
Q ss_pred ---------------CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccccCC
Q 040261 300 ---------------MRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVTYNT 343 (343)
Q Consensus 300 ---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~t~~~ 343 (343)
.||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||.+||++
T Consensus 536 k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 536 RCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 35666788888999999999999999999999999999999863
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=7.2e-25 Score=182.25 Aligned_cols=309 Identities=14% Similarity=0.074 Sum_probs=254.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCcc---HHHHHHHHH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD---AVTFTSLIK 95 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 95 (343)
........+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+......++ ...+..+..
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 34444556778899999999999999865 44667899999999999999999999999987532222 356788899
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCC---cchHHHHHHH
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD---AITYSTITDG 172 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~ 172 (343)
.+.+.|++++|.++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.++. ++. ...+..+...
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-----SLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHH
Confidence 9999999999999999998763 346778999999999999999999999999876521 111 1245667778
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHH
Q 040261 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252 (343)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 252 (343)
+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......++..++.++...|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999998764 3356678888899999999999999999999864222346788899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh---cCChHHHHHHHHHH
Q 040261 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK---NKEIEGALSLYSEM 329 (343)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 329 (343)
...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.++++|
T Consensus 269 ~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 269 LEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 9999999886 456667788999999999999999999998876 5888889888887664 56899999999999
Q ss_pred HhCCCCCCcc
Q 040261 330 LSKGIRPTVV 339 (343)
Q Consensus 330 ~~~~~~p~~~ 339 (343)
.++++.|+..
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 9988777654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.1e-23 Score=193.97 Aligned_cols=312 Identities=12% Similarity=0.048 Sum_probs=176.5
Q ss_pred hHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 040261 3 IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82 (343)
Q Consensus 3 i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (343)
+|+.+...++ .+...+..++..+.+.|++++|..+++.+.+.. +.+...|..+..++...|++++|...++++.+..
T Consensus 555 ~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 555 WLEKAAELNP--QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHhCc--cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4455544444 355566666666666667777766666665533 3455566666666666666666666666666543
Q ss_pred CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCC
Q 040261 83 FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162 (343)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (343)
+.+...+..+..++.+.|++++|...++++.+.... +..++..+...+...|++++|.++++.+.... +.+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~ 702 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-------PKA 702 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cCC
Confidence 224555666666666666666666666666654322 45556666666666666666666666665543 334
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040261 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242 (343)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (343)
...+..+...+...|++++|...++.+...+ |+..++..+..++.+.|++++|...++.+.+.. +.+...+..+...
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455555556666666666666666655543 333445555555555666666666665555542 3345555555555
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHH
Q 040261 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322 (343)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 322 (343)
+...|++++|...|+++.+.. +.+..++..+...+...|+ .+|...++++.+.. +.++..+..+...+...|++++|
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 555666666666665555543 3445555555555555555 44555555554432 22334444455555555555555
Q ss_pred HHHHHHHHhC
Q 040261 323 LSLYSEMLSK 332 (343)
Q Consensus 323 ~~~~~~~~~~ 332 (343)
.+.++++++.
T Consensus 857 ~~~~~~a~~~ 866 (899)
T TIGR02917 857 LPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHhh
Confidence 5555555544
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2.7e-23 Score=191.29 Aligned_cols=299 Identities=14% Similarity=0.087 Sum_probs=171.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
+...|..+..++.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+++++.+.. +.+..++..+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 55556666666666666666666666655433 2344455555566666666666666666665543 224555555666
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (343)
.+...|++++|.++++.+.+.+. .+...+..+...+...|++++|.+.++++.... |+..++..+..++.+
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--------PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------CCchHHHHHHHHHHH
Confidence 66666666666666666655532 244455555556666666666666666655543 333455555566666
Q ss_pred cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 040261 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255 (343)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (343)
.|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+++++.+.. +.+...+..+...+...|+ .+|+.+
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 666666666666655543 3345555555666666666666666666665553 3445555566666666666 556666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 256 LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
++++.+.. +-+..++..+...+...|++++|...++++.+.+. .+..++..+..++.+.|++++|.+++++|+
T Consensus 826 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 826 AEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66655543 33344555555556666666666666666665542 255556666666666666666666666554
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.3e-23 Score=174.67 Aligned_cols=289 Identities=15% Similarity=0.115 Sum_probs=241.0
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHH
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD---LYTYNILINCFCKMGRVSPGFVVLGRI 78 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 78 (343)
+.|..+...+| .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|++++|..+|+++
T Consensus 56 ~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~ 133 (389)
T PRK11788 56 DLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQL 133 (389)
T ss_pred HHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56788888765 4788999999999999999999999999987542221 246788899999999999999999999
Q ss_pred HHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 040261 79 LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV----FTYTTLINGLCRTGHTIVALNLFEEMANGNGE 154 (343)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 154 (343)
.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...++++.+..
T Consensus 134 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 210 (389)
T PRK11788 134 VDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-- 210 (389)
T ss_pred HcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--
Confidence 8763 446788999999999999999999999999887544322 245567778899999999999999998864
Q ss_pred CCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHH
Q 040261 155 FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV 234 (343)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 234 (343)
+.+...+..+...+.+.|++++|.+.++++...+......+++.++.+|...|++++|...++.+.+. .|+..
T Consensus 211 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~ 283 (389)
T PRK11788 211 -----PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGAD 283 (389)
T ss_pred -----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCch
Confidence 34456788888999999999999999999987643323466888999999999999999999999886 46666
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---CCchHHHHHHHHHHHhCCCCccHH
Q 040261 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL---TGRVNRAKELFVSMESNGCMRDVF 304 (343)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 304 (343)
.+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.++++.|++.
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7788999999999999999999999886 6888888888877664 558999999999999877777665
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=7.7e-21 Score=165.81 Aligned_cols=313 Identities=11% Similarity=0.020 Sum_probs=254.0
Q ss_pred hHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 040261 3 IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82 (343)
Q Consensus 3 i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (343)
+++......|. +...+..++.+....|++++|.+.++++.+.. |.+...+..+...+...|++++|...++++.+..
T Consensus 64 l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~ 140 (656)
T PRK15174 64 LLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF 140 (656)
T ss_pred HhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45555665664 66778888888889999999999999998865 4566788888999999999999999999999864
Q ss_pred CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCC
Q 040261 83 FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162 (343)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (343)
+.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.... ..++
T Consensus 141 -P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~------~~~~ 211 (656)
T PRK15174 141 -SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFF------ALER 211 (656)
T ss_pred -CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC------CCcc
Confidence 335778888999999999999999999988776443 33333333 34788999999999999987764 1233
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHH----HHHHHHHHHHcCCCCCHHHHHH
Q 040261 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE----AKCLFIEMMDQGVQPNVVTFNV 238 (343)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ 238 (343)
......+..++...|++++|...++++.... +.+...+..+...+...|++++ |...+++..+.. +.+...+..
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~ 289 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTL 289 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 4445556778889999999999999998765 3467788889999999999986 899999998863 445778889
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcC
Q 040261 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV-FSYGILINGYCKNK 317 (343)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 317 (343)
+...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|...++++.+.. |+. ..+..+..++...|
T Consensus 290 lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G 366 (656)
T PRK15174 290 YADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAG 366 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCC
Confidence 9999999999999999999999875 4566778888999999999999999999998763 544 33444567889999
Q ss_pred ChHHHHHHHHHHHhC
Q 040261 318 EIEGALSLYSEMLSK 332 (343)
Q Consensus 318 ~~~~a~~~~~~~~~~ 332 (343)
++++|...|++..+.
T Consensus 367 ~~deA~~~l~~al~~ 381 (656)
T PRK15174 367 KTSEAESVFEHYIQA 381 (656)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998865
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.4e-19 Score=157.93 Aligned_cols=300 Identities=10% Similarity=0.031 Sum_probs=248.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (343)
-...++..+.+.|++++|..+++...... +-+...+..++.+....|+++.|...++++....+ .+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 45566778889999999999999988765 34455666777788889999999999999998753 36778888899999
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC
Q 040261 99 AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (343)
..|++++|...+++....... +...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-------P~~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV-------PPRGDMIATC-LSFLNKSR 192 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------CCCHHHHHHH-HHHHHcCC
Confidence 999999999999999987433 56788889999999999999999999887754 2233344333 34788999
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhH----HHH
Q 040261 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE----ASR 254 (343)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~ 254 (343)
+++|...++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 99999999998776433445555666778889999999999999999874 4457778889999999999986 899
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++...
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999875 5567889999999999999999999999999864 335667788889999999999999999999865
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2.4e-18 Score=150.60 Aligned_cols=233 Identities=14% Similarity=0.050 Sum_probs=139.0
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHH
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (343)
.+..+...+...|++++|+..+++..+.... ....|..+..++...|++++|...++++.+.. +.+..++..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~ 404 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-------SEDPDIYYH 404 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 3444444555556666666666666554221 24455556666666666666666666665543 334556666
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 040261 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248 (343)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (343)
+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+.. +.+...++.+..++...|+
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccC
Confidence 6666666777777777776666543 2245555566666667777777777777666542 3345666666777777777
Q ss_pred hhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHH
Q 040261 249 MDEASRLLELMIQIGVRPDA------SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322 (343)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 322 (343)
+++|...|++..+.....+. ..++.....+...|++++|..++++..+.. +.+...+..+...+.+.|++++|
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 77777777776664311111 011112222334577777777777766543 23344667777778888888888
Q ss_pred HHHHHHHHhC
Q 040261 323 LSLYSEMLSK 332 (343)
Q Consensus 323 ~~~~~~~~~~ 332 (343)
++.|++..+.
T Consensus 562 i~~~e~A~~l 571 (615)
T TIGR00990 562 LKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHH
Confidence 8888777643
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=4.5e-18 Score=148.92 Aligned_cols=304 Identities=12% Similarity=0.002 Sum_probs=242.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (343)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.+++.++... .+...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4667788999999999999999998874 57888899999999999999999999999998753 35778888999999
Q ss_pred hcCcHHHHHHHHHHHHhcCCC----------------------------CC-HHHHHHH---------------------
Q 040261 99 AESRIMEAAALFTKLRAFGCK----------------------------PD-VFTYTTL--------------------- 128 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~----------------------------~~-~~~~~~l--------------------- 128 (343)
..|++++|+..+......+.. |. ...+..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998766544322100 00 0000000
Q ss_pred ---------HHHH------HhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040261 129 ---------INGL------CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193 (343)
Q Consensus 129 ---------~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (343)
+... ...+++++|.+.|+.....+.. .+.....+..+...+...|++++|+..+++..+..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~----~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL----GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0000 1125788899999998875410 12345678888888999999999999999998764
Q ss_pred CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 040261 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273 (343)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (343)
+.....|..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...|++.++.. +.+...+..
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 2246688888899999999999999999998874 4457888899999999999999999999999875 556778888
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
+...+.+.|++++|...+++..+.. +.+...++.+...+...|++++|++.|++.+...
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 9999999999999999999988753 4467889999999999999999999999988653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=2.8e-19 Score=144.99 Aligned_cols=301 Identities=18% Similarity=0.190 Sum_probs=178.3
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHH
Q 040261 13 SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92 (343)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (343)
.|.-.++|..+...+-..|++++|+.+++.+++.. +..+..|..+..++...|+.+.|.+.|...++. .|+.....+
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s 188 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARS 188 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhc
Confidence 34567899999999999999999999999999865 346778999999999999999999999988875 444433222
Q ss_pred -HHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHH
Q 040261 93 -LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171 (343)
Q Consensus 93 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (343)
+...+...|+.++|...|.+.++.... =...|+.|...+...|+...|++.|++..+.+ +.-...|..|..
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-------P~f~dAYiNLGn 260 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-------PNFLDAYINLGN 260 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-------CcchHHHhhHHH
Confidence 333334456777777777666654221 23456666666666666666666666666654 222445666666
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChh
Q 040261 172 GLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN-VVTFNVIMNELCKNGKMD 250 (343)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 250 (343)
.|...+.++.|...+.+..... +.....+..+...|...|..+-|++.+++.++. .|+ ...|+.|..++...|+..
T Consensus 261 V~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 261 VYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchH
Confidence 6666666666665555544431 112344444444555555555555555555543 233 445555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040261 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD-VFSYGILINGYCKNKEIEGALSLYSEM 329 (343)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 329 (343)
+|.+.+.+..... +-.....+.|...|...|.+++|.++|....+- .|. ...++.|...|-+.|+.++|+.-|++.
T Consensus 338 ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 338 EAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 5555555555442 223344444555555555555555555544442 122 233444445555555555555555544
Q ss_pred H
Q 040261 330 L 330 (343)
Q Consensus 330 ~ 330 (343)
+
T Consensus 415 l 415 (966)
T KOG4626|consen 415 L 415 (966)
T ss_pred H
Confidence 4
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=1.2e-17 Score=155.53 Aligned_cols=301 Identities=13% Similarity=0.070 Sum_probs=208.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHH-----------
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS----------- 92 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 92 (343)
...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|.+.|+++.+.... +...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHH
Confidence 445677888888888888887754 345667777788888888888888888888765322 2322222
Q ss_pred -------------------------------HHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 040261 93 -------------------------------LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141 (343)
Q Consensus 93 -------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 141 (343)
+...+...|++++|++.+++..+..+. +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 233345678888888888888877543 566777788888999999999
Q ss_pred HHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC-----------------------------
Q 040261 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE----------------------------- 192 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------- 192 (343)
...++++.... +.+...+..+...+...++.++|+..++.+...
T Consensus 515 ~~~l~~al~~~-------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 515 DALMRRLAQQK-------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred HHHHHHHHHcC-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99998887654 223333333333333444444444443332110
Q ss_pred ----------CCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 193 ----------NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 193 ----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
..+.+...+..+...+.+.|++++|...++.+.+.. +.+...+..++..+...|++++|...++.+.+.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 123445566677788888899999999999888863 445777888888898999999999999887765
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCC--c---cHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC
Q 040261 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM--R---DVFSYGILINGYCKNKEIEGALSLYSEMLS-KGIRP 336 (343)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p 336 (343)
. +.+...+..+..++...|++++|.++++++...... | +...+..+...+...|++++|+..|++.+. .|+.|
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 3 345566677778888899999999999988765311 1 224555567788888999999999988864 24544
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=1.1e-17 Score=155.84 Aligned_cols=317 Identities=9% Similarity=0.031 Sum_probs=227.0
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CHHHH------------HHHHHHHHhcCCc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFP-DLYTY------------NILINCFCKMGRV 68 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~~~~ 68 (343)
..|+...+..| .+..++..+..++.+.|++++|+..|++..+..... +...+ ......+.+.|++
T Consensus 290 ~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~ 367 (1157)
T PRK11447 290 PELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL 367 (1157)
T ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH
Confidence 35666666665 478889999999999999999999999987754211 11111 1224456788999
Q ss_pred chHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHH--------------------
Q 040261 69 SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL-------------------- 128 (343)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------------- 128 (343)
++|...|+++.+... .+...+..+...+...|++++|++.|++..+.... +...+..+
T Consensus 368 ~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 368 AQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 999999999988753 35667778889999999999999999998876432 23333222
Q ss_pred ----------------------HHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHH
Q 040261 129 ----------------------INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186 (343)
Q Consensus 129 ----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (343)
...+...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|...+
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233456788888888888888764 345667777888888999999999999
Q ss_pred HHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc---------------------------------------
Q 040261 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ--------------------------------------- 227 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------------------- 227 (343)
+++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 519 ~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 519 RRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8887643 223333333333333444444444443322100
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHH
Q 040261 228 GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307 (343)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (343)
..+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..+...|++++|.+.++.+.+.. +.+...+.
T Consensus 598 ~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~ 675 (1157)
T PRK11447 598 QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQR 675 (1157)
T ss_pred hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHH
Confidence 123445566778888889999999999999998875 5578888999999999999999999999887652 23456677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 308 ILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 308 ~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.+..++...|++++|.+++++++..
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 7888888999999999999998865
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-18 Score=141.68 Aligned_cols=317 Identities=15% Similarity=0.177 Sum_probs=216.6
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHH-HHHHHHHHHhcCCcchHHHHHHHHHH
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYT-YNILINCFCKMGRVSPGFVVLGRILR 80 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (343)
..++.+.+..| ..++.|-.+..++...|+.+.|.+.|...++.+ |+... ...+...+-..|+..+|...|.+.++
T Consensus 137 ~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 137 ALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 34556666555 488899999999999999999999888877743 54432 22233344445666666666555554
Q ss_pred cCC--------------------------------Ccc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHH
Q 040261 81 SCF--------------------------------TPD-AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127 (343)
Q Consensus 81 ~~~--------------------------------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (343)
... .|+ ...|-.|...|...+.+++|+..|.+....... ....+..
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gN 291 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGN 291 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccc
Confidence 321 122 233444444444444445555444444433111 2334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 040261 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207 (343)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (343)
+...|...|.++.|+..+++..+.. +.-...|+.|..++-..|++.+|.+.+.+..... +.-..+.+.+..+
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~-------P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni 363 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQ-------PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNI 363 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcC-------CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4445556667777777777766654 3335678888888888888888888888777653 2235667777888
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchH
Q 040261 208 FCYANDWNEAKCLFIEMMDQGVQPN-VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD-ASVYNTLMDGFCLTGRVN 285 (343)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 285 (343)
+...|.+++|..++....+- .|. ...++.|...|-+.|++++|+..+++.++. +|+ ...++.+...|...|+.+
T Consensus 364 ~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHH
Confidence 88888888888888877764 343 567788888888899999999999888875 444 567888888899999999
Q ss_pred HHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 040261 286 RAKELFVSMESNGCMRD-VFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVV 339 (343)
Q Consensus 286 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 339 (343)
.|.+.+.+.+.. .|. ...++.|...|...|+..+|+.-|++.+ .++||..
T Consensus 440 ~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfp 490 (966)
T KOG4626|consen 440 AAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFP 490 (966)
T ss_pred HHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCc
Confidence 999999888875 354 4678889999999999999999999998 4567653
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.4e-16 Score=142.24 Aligned_cols=321 Identities=11% Similarity=0.028 Sum_probs=224.7
Q ss_pred hHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 040261 3 IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82 (343)
Q Consensus 3 i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (343)
+|...... .|.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 37 ~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 37 VYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44555442 33567779999999999999999999999988754 4556777888888999999999999999998874
Q ss_pred CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH----------------
Q 040261 83 FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE---------------- 146 (343)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------- 146 (343)
+.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..++...+..++|++.++
T Consensus 114 -P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~ 190 (765)
T PRK10049 114 -PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADA 190 (765)
T ss_pred -CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33556 888888899999999999999999987544 45555566666666666665554444
Q ss_pred ------------------------------HHHccCCCCCccccCCcc-hH----HHHHHHHHhcCChHHHHHHHHHhhh
Q 040261 147 ------------------------------EMANGNGEFGVVCKPDAI-TY----STITDGLCKEGFVDKAKELFLKMKD 191 (343)
Q Consensus 147 ------------------------------~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (343)
.+.+... ..|+.. .+ ...+.++...|++++|+..|+.+.+
T Consensus 191 ~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~-----~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~ 265 (765)
T PRK10049 191 AAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH-----DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA 265 (765)
T ss_pred HHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc-----cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 3332210 011111 11 1113345677899999999999887
Q ss_pred CCCC-CChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---
Q 040261 192 ENIN-PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP---NVVTFNVIMNELCKNGKMDEASRLLELMIQIGV--- 264 (343)
Q Consensus 192 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 264 (343)
.+.+ |+. ....+..++...|++++|...++.+.+..... .......+..++.+.|++++|..+++.+.+...
T Consensus 266 ~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~ 344 (765)
T PRK10049 266 EGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFL 344 (765)
T ss_pred cCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceE
Confidence 6532 221 22224668888899999999999887653111 123455666677888999999999888876521
Q ss_pred --------CCC---HHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 265 --------RPD---ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 265 --------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
.|+ ...+..+...+...|+.++|.+.++++.... +.+...+..+...+...|++++|++.+++.+..
T Consensus 345 ~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l- 422 (765)
T PRK10049 345 RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL- 422 (765)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Confidence 123 2344566677788888888888888887753 445677778888888888888888888888754
Q ss_pred CCCCc
Q 040261 334 IRPTV 338 (343)
Q Consensus 334 ~~p~~ 338 (343)
.|+.
T Consensus 423 -~Pd~ 426 (765)
T PRK10049 423 -EPRN 426 (765)
T ss_pred -CCCC
Confidence 4664
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=4.5e-16 Score=139.01 Aligned_cols=322 Identities=13% Similarity=0.065 Sum_probs=236.7
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
++|+......| .++..+..++..+.+.|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.
T Consensus 70 ~~~~~al~~~P--~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 70 TLWQKALSLEP--QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35566666555 478888899999999999999999999998764 44566 888888999999999999999999987
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHH----------------------------------------------HHHHHHHh
Q 040261 82 CFTPDAVTFTSLIKGLCAESRIMEAA----------------------------------------------ALFTKLRA 115 (343)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~----------------------------------------------~~~~~~~~ 115 (343)
.+. +...+..+..++...+..+.|+ +.++.+.+
T Consensus 146 ~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 146 APQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred CCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 533 4555555666665555554444 34444443
Q ss_pred c-CCCCCHH-HHH----HHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 040261 116 F-GCKPDVF-TYT----TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189 (343)
Q Consensus 116 ~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (343)
. ...|+.. .+. ..+..+...|++++|...|+++...+. ..|+ .....+..+|...|++++|+..|+++
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~-----~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ-----IIPP-WAQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC-----CCCH-HHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 2 1122211 111 113345677999999999999988641 0122 12233577899999999999999998
Q ss_pred hhCCCCC---ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhCCChhHH
Q 040261 190 KDENINP---DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-----------QPN---VVTFNVIMNELCKNGKMDEA 252 (343)
Q Consensus 190 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a 252 (343)
....... .......+..++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 7653111 124456667788999999999999999987631 123 23455677888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
+.+++++.... +.+...+..+...+...|++++|++.+++..+.. +.+...+..++..+...|++++|..+++++++.
T Consensus 379 ~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999998875 6678899999999999999999999999999864 334667777778899999999999999999965
Q ss_pred CCCCCc
Q 040261 333 GIRPTV 338 (343)
Q Consensus 333 ~~~p~~ 338 (343)
.|+.
T Consensus 457 --~Pd~ 460 (765)
T PRK10049 457 --EPQD 460 (765)
T ss_pred --CCCC
Confidence 4543
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1e-15 Score=119.32 Aligned_cols=246 Identities=15% Similarity=0.207 Sum_probs=181.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHH
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (343)
|.+.+++..+|..+++--..+.|.+++++..+...+.+..+||.+|.+-+-... .++..+|.+..+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 468899999999999999999999999998887778899999999977554333 7889999999999999999999
Q ss_pred HHHHhhcCcHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHcc--CCCCCccccCCcchH
Q 040261 94 IKGLCAESRIME----AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV-ALNLFEEMANG--NGEFGVVCKPDAITY 166 (343)
Q Consensus 94 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~--~~~~~~~~~~~~~~~ 166 (343)
+++..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++..+... |..+.+..+.+...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56788999999999999999999999999888754 44555554432 223333234455667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhC----CCCCC---hhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040261 167 STITDGLCKEGFVDKAKELFLKMKDE----NINPD---VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239 (343)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (343)
...+..|.+..+.+.|.++..-+... -+.|+ ..-|..+....++....+.....++.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 77788888888888888776555432 12222 122444555556666666667777777665556666666667
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcC
Q 040261 240 MNELCKNGKMDEASRLLELMIQIG 263 (343)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~ 263 (343)
+++....|.++-.-++|..++..|
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhh
Confidence 776666666666666666655544
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=5.2e-19 Score=139.79 Aligned_cols=262 Identities=17% Similarity=0.135 Sum_probs=83.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhc
Q 040261 22 ILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100 (343)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (343)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666666777777777775433222 1233444455555556666777777777777665422 44455555555 466
Q ss_pred CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChH
Q 040261 101 SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180 (343)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (343)
+++++|.++++...+. .++...+..++..+.+.++++++..+++.+..... .+.+...|..+...+.+.|+.+
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----APDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCCHH
Confidence 6677776666655443 23445555666666667777777777666654321 2345556666666666777777
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 040261 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260 (343)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (343)
+|++.+++..+.. |.+......++..+...|+.+++..+++...+.. +.+...+..+..++...|+.++|..++++..
T Consensus 164 ~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 7777777666643 2245556666666666677666666666665552 3444555666666666677777777776666
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 040261 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295 (343)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (343)
+.. +.|+.....+..++...|+.++|.++.+++.
T Consensus 242 ~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 242 KLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHS-TT-HHHHHHHHHHHT----------------
T ss_pred ccc-ccccccccccccccccccccccccccccccc
Confidence 653 4466666666666777777777766665543
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=2.1e-15 Score=124.62 Aligned_cols=286 Identities=13% Similarity=0.105 Sum_probs=223.5
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHH-HHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHH--HHHHHHhhcCcHHH
Q 040261 29 KNKHYDTVLSLFKRLNSIGLFPDLYT-YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFT--SLIKGLCAESRIME 105 (343)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 105 (343)
-.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+++.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888765532 22333 433455558999999999999999875 44543332 33677888999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCc------chHHHHHHHHHhcCCh
Q 040261 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA------ITYSTITDGLCKEGFV 179 (343)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 179 (343)
|.+.++++.+..+. ++.....+...|.+.|++++|.+++..+.+... ..+.. .+|..++.......+.
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-----~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-----GDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999988654 678888999999999999999999999998762 11111 2334444444555667
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 040261 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259 (343)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (343)
+...++++.+.+. .+.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 7777777777553 3457888889999999999999999999999884 5555322 233344569999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+.+++.+..
T Consensus 321 lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 321 IKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8874 556778889999999999999999999999986 599999999999999999999999999988653
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=9.7e-16 Score=127.30 Aligned_cols=291 Identities=11% Similarity=0.064 Sum_probs=214.0
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHH
Q 040261 28 AKNKHYDTVLSLFKRLNSIGLFPDL-YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106 (343)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (343)
...|+++.|.+.+.+..+.. |+. ..+-....+..+.|+.+.|.+++.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 46899999999998877643 443 344555678888999999999999988764333333444457888889999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHH-HHHHH---HHhcCChHHH
Q 040261 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS-TITDG---LCKEGFVDKA 182 (343)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~a 182 (343)
.+.++.+.+..+. +......+...+...|++++|.+.+..+.+.+. .+...+. .-..+ ....+..++.
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~-------~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL-------FDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999998654 677888999999999999999999999998751 2222221 11111 1222333333
Q ss_pred HHHHHHhhhCC---CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhCCChhHHHHHH
Q 040261 183 KELFLKMKDEN---INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT--F-NVIMNELCKNGKMDEASRLL 256 (343)
Q Consensus 183 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~~ 256 (343)
.+.+..+.... .+.+...+..+...+...|+.++|..++++..+.. |+... + ..........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 34444444432 12378888899999999999999999999999873 44331 1 11122223457788899999
Q ss_pred HHHHHcCCCCCH--HHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 257 ELMIQIGVRPDA--SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 257 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
+...+.. +-|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 323 e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 323 EKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8887763 4445 677789999999999999999999544433468988899999999999999999999998754
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=5.1e-19 Score=139.86 Aligned_cols=262 Identities=18% Similarity=0.141 Sum_probs=115.1
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcC-CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040261 57 ILINCFCKMGRVSPGFVVLGRILRSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135 (343)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (343)
.+...+.+.|++++|++++....... .+.+...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 56788899999999999997655443 2335566666777777889999999999999987644 56677777777 789
Q ss_pred CChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCChhhHHHHHHHHhccCcH
Q 040261 136 GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN-INPDVVTYTSLIRGFCYANDW 214 (343)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 214 (343)
+++++|.++++...+.. +++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccccc--------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 99999999998876543 456777888899999999999999999976542 345778888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 040261 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294 (343)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (343)
++|...+++..+.. +-+......++..+...|+.+++..+++...+.. +.|+..+..+..++...|+.++|...+++.
T Consensus 163 ~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999999973 3357788899999999999999999998888764 556678889999999999999999999998
Q ss_pred HhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
.+.. +.|+.....+..++...|+.++|.++.+++..
T Consensus 241 ~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccc-cccccccccccccccccccccccccccccccc
Confidence 8853 45788888999999999999999999887754
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=7e-15 Score=132.17 Aligned_cols=315 Identities=10% Similarity=0.034 Sum_probs=237.2
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-C-CCCCHHHHHHHHHHHHhcCCcc---hHHHH----
Q 040261 4 FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI-G-LFPDLYTYNILINCFCKMGRVS---PGFVV---- 74 (343)
Q Consensus 4 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~---~a~~~---- 74 (343)
+..|.+..+ .+....-.+.....+.|+.++|.++++..... + ..++......++..+.+.+... ++..+
T Consensus 365 ~~~~y~~~~--~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 365 ARLLYQQEP--ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 444555544 37777778888888999999999999998762 1 1233444556777777765522 22222
Q ss_pred ------------------HHHHHHc-CC-Cc--cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 040261 75 ------------------LGRILRS-CF-TP--DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132 (343)
Q Consensus 75 ------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (343)
++..... +. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al 519 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQA 519 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHH
Confidence 2222111 11 23 56677778877776 7888999988887776 35655544555666
Q ss_pred HhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccC
Q 040261 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212 (343)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 212 (343)
...|++++|...++++... +|+...+..+..++.+.|+.++|...+++..+.. +.....+..+.......|
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCC
Confidence 7899999999999998664 3445556777888899999999999999998764 223333434444455669
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHH
Q 040261 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292 (343)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (343)
++++|...+++..+. .|+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++...|++++|...++
T Consensus 591 r~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 591 QPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999986 4678889999999999999999999999999986 5677888889999999999999999999
Q ss_pred HHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 040261 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338 (343)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 338 (343)
+..+.. +-+...+..+..++...|++++|...+++.+.. .|+.
T Consensus 668 ~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 668 RAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 998864 346788899999999999999999999999865 4543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.2e-14 Score=128.10 Aligned_cols=145 Identities=14% Similarity=-0.009 Sum_probs=76.3
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
+.|+...+..|. ..+.++ .++..+...|+.++|+..+++..... +.+......+...+...|++++|+++|+++.+.
T Consensus 55 ~~L~qaL~~~P~-~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~ 131 (822)
T PRK14574 55 DYLQEESKAGPL-QSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKK 131 (822)
T ss_pred HHHHHHHhhCcc-chhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555543 111222 55566666666666666666665211 112222333344566666666666666666665
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 82 CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
.+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 132 dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 132 DPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 432 3455555566666666666666666666655 3343344333333333444444666666665554
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=6e-14 Score=123.78 Aligned_cols=302 Identities=11% Similarity=0.020 Sum_probs=173.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (343)
...+...+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+..
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~ 181 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHh
Confidence 3333557778888888888888887765 345566667777788888888888888888765 3444445444444444
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH---------------------------------
Q 040261 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE--------------------------------- 146 (343)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------------------------------- 146 (343)
.++..+|++.++++.+..+. +...+..+..++.+.|-...|.++..
T Consensus 182 ~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred cchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 55555688888888776432 44444555555444443333333222
Q ss_pred ---------------HHHccCCCCCccccCCcchH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 040261 147 ---------------EMANGNGEFGVVCKPDAITY----STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207 (343)
Q Consensus 147 ---------------~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (343)
.+...-+. .|+....| .-.+.++...|+..++++.++.+...+.+....+-..+..+
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~----~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGK----DPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccC----CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 22211100 11111111 12344556666677777777776666554444556666666
Q ss_pred HhccCcHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-----------CCC---H
Q 040261 208 FCYANDWNEAKCLFIEMMDQG-----VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV-----------RPD---A 268 (343)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~ 268 (343)
|...+++++|..+++.+.... ..++......|.-++...+++++|..+++.+.+... .|| .
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 666666677766666665432 122233345566666666666666666666665210 122 1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++...
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 233444555666666666666666665543 3456666666666666666666666665554
No 29
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.76 E-value=6.3e-14 Score=108.49 Aligned_cols=293 Identities=12% Similarity=0.058 Sum_probs=239.9
Q ss_pred cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHH
Q 040261 30 NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109 (343)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 109 (343)
.|+|.+|..+..+-.+.+ +.....|..-.++.-+.|+.+.+-.++.++.+....++....-...+.....|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999999987776 3345577778888899999999999999998864466677777888889999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCC-------cchHHHHHHHHHhcCChHHH
Q 040261 110 FTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD-------AITYSTITDGLCKEGFVDKA 182 (343)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a 182 (343)
++++.+.+.. .+........+|.+.|++.....++..+.+.+- -.+ ..+|..++.-....+..+.-
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~------l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGL------LSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC------CChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 9999988765 677888999999999999999999999998873 222 24677777777777777777
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
...++..... .+.++..-..++.-+.+.|+.++|.++.++..+++..|+.. ..-.+.+.++.+.-.+..+.-.+.
T Consensus 249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh
Confidence 7788777554 34467777788888999999999999999999987666621 223456778888888888776665
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 040261 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338 (343)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 338 (343)
. +.++..+..|...|.+.+.|.+|...|+...+. .|+..+|+.+.+++.+.|++.+|.+..++.+..-.+|+.
T Consensus 324 h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 324 H-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred C-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 3 445678999999999999999999999988876 599999999999999999999999999998865555544
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2e-14 Score=108.15 Aligned_cols=290 Identities=18% Similarity=0.150 Sum_probs=225.4
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccH------HHHHHHHHHHhhcCc
Q 040261 29 KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA------VTFTSLIKGLCAESR 102 (343)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~ 102 (343)
-.++.++|+++|-+|.+.. +.+..+..++.+.|.+.|..+.|+.+.+.+.++ ||. .....+..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 3578899999999998844 445567778899999999999999999999875 332 234456677888999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCC---cchHHHHHHHHHhcCCh
Q 040261 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD---AITYSTITDGLCKEGFV 179 (343)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 179 (343)
++.|+.+|..+.+.+.. -..+...|+..|....++++|+++-+++.+.++. +.+ ...|.-+...+.-..+.
T Consensus 123 ~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-----~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 123 LDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-----TYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred hhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-----cchhHHHHHHHHHHHHHhhhhhH
Confidence 99999999999986533 5567888999999999999999999999887631 111 24567777777788999
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 040261 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259 (343)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (343)
+.|..++++..+.+. .....--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+.++
T Consensus 197 d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 197 DRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999988652 2444555667888999999999999999999865555778889999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCC
Q 040261 260 IQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK---NKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 333 (343)
.+.. +....-..+...-....-.+.|...+.+-... .|+...+..++..-.. .|...+-+..+++|....
T Consensus 276 ~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 276 METN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 8864 34444455555545555666676666555544 5999999999987654 355777788888887653
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.7e-15 Score=124.17 Aligned_cols=292 Identities=14% Similarity=0.071 Sum_probs=226.7
Q ss_pred CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC--CccHHHHHHHHHHHhhcCcHHHHHH
Q 040261 31 KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF--TPDAVTFTSLIKGLCAESRIMEAAA 108 (343)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (343)
=+.++|+..|..+... +.....+...+..+|...+++++|.++|+.+.+... .-+..+|...+--+- +.-+---
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHH
Confidence 3567899999995543 344456777888999999999999999999987531 125566766665432 2122222
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 040261 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188 (343)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (343)
+-+.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 233344432 2367899999999999999999999999999976 34688999999999999999999999999
Q ss_pred hhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 040261 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA 268 (343)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 268 (343)
...... ..-..|.-+...|.+.++++.|+-.|+.+.+.+ +-+.+....+...+.+.|+.++|+.+++++...+ +.|+
T Consensus 481 Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~ 557 (638)
T KOG1126|consen 481 ALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNP 557 (638)
T ss_pred hhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCc
Confidence 876431 134455556788999999999999999998864 4457777888899999999999999999999886 4455
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 040261 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338 (343)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 338 (343)
..--.-+..+...++.++|+..++++++. ++.+...|..+...|.+.|+.+.|+.-|.-+.+...++..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 55555667778899999999999999986 2445677888889999999999999999888876555443
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=3.4e-14 Score=127.84 Aligned_cols=264 Identities=10% Similarity=0.008 Sum_probs=209.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040261 51 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130 (343)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (343)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56778888877776 8888999988888775 355544444555567899999999999998665 344555667788
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 040261 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210 (343)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (343)
++.+.|+.++|...+++..... +.....+..+.......|++++|...+++..+.. |+...+..+..++.+
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-------LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQ 621 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 8899999999999999998764 2333333344445556699999999999998764 578889999999999
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHH
Q 040261 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290 (343)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (343)
.|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|+..
T Consensus 622 lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 622 RHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999874 4457778888889999999999999999999875 55778899999999999999999999
Q ss_pred HHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 291 FVSMESNGCMRDV-FSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 291 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
+++..+.. |+. .+.........+..+++.+.+.+++....
T Consensus 700 l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 700 ARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 99998863 543 45555666677777888888888776643
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=4.8e-14 Score=116.64 Aligned_cols=263 Identities=10% Similarity=0.021 Sum_probs=206.4
Q ss_pred hhhHHHH-HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHH--HHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHH
Q 040261 17 VCSFNIL-FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYN--ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93 (343)
Q Consensus 17 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (343)
+..+..+ ..+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++++.+..+ -+......+
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll 193 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLA 193 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 3444444 44448999999999999999874 45554333 346788899999999999999998763 367888899
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchH
Q 040261 94 IKGLCAESRIMEAAALFTKLRAFGCKPDV-------FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166 (343)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (343)
...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+... .+.++...
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-------~~~~~~~~ 266 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-------TRHQVALQ 266 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-------HhCCHHHH
Confidence 99999999999999999999988755322 12333444444555666777777776554 35577888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 040261 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246 (343)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (343)
..+...+...|+.++|...+++..+. +++.... ++.+....++.+++....+...+.. +-|...+..+...+.+.
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHC
Confidence 99999999999999999999998874 3444222 3444456699999999999998873 44566788899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 040261 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
+++++|...|+.+.+. .|+...+..+...+.+.|+.++|.+.+++...
T Consensus 342 ~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 342 GEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999986 68999999999999999999999999997754
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=6.6e-14 Score=109.46 Aligned_cols=308 Identities=16% Similarity=0.200 Sum_probs=232.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcC--CcchH-HHHHHHHHHcC---------
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG--RVSPG-FVVLGRILRSC--------- 82 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a-~~~~~~~~~~~--------- 82 (343)
..+++=|.|+.. ...|...++.-+|+.|...|++.+...-..+++.-+-.+ ++--| .+.|-.|...|
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~ 192 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKS 192 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccc
Confidence 344555555553 567899999999999999998888877666665433222 21111 11222221111
Q ss_pred ----------CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 83 ----------FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 83 ----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
.+-+..++..+|.++++.-..+.|.+++++-.....+.+..+||.++.+-+-..+ .+++.+|....
T Consensus 193 G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqk 268 (625)
T KOG4422|consen 193 GAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQK 268 (625)
T ss_pred ccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhh
Confidence 2346778999999999999999999999999988888899999999987654433 68888998888
Q ss_pred CCCCccccCCcchHHHHHHHHHhcCChHH----HHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHH-HHHHHHHHHH-
Q 040261 153 GEFGVVCKPDAITYSTITDGLCKEGFVDK----AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNE-AKCLFIEMMD- 226 (343)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~- 226 (343)
+.||..|+|+++.+..+.|+++. |.+++.+|++-|+.|...+|..++..+.+.++..+ +..++.+++.
T Consensus 269 ------m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 269 ------MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred ------cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 89999999999999999998764 56778889999999999999999999999888744 4444444442
Q ss_pred ---cCCC---C-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHhcCCchHHHHHHHH
Q 040261 227 ---QGVQ---P-NVVTFNVIMNELCKNGKMDEASRLLELMIQIG----VRPD---ASVYNTLMDGFCLTGRVNRAKELFV 292 (343)
Q Consensus 227 ---~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (343)
+.+. | +...|...+..|....|.+-|.++..-+.... +.|+ ..-|..+....++....+.....++
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2 45667788888999999999998876664421 2233 2335667777788889999999999
Q ss_pred HHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 293 SMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
.|.-.-.-|+..+...++++..-.|.++-.-++|.+++..|
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 99988778899999999999999999998888888887766
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=1.4e-13 Score=114.51 Aligned_cols=269 Identities=8% Similarity=-0.034 Sum_probs=196.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH--HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL--YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
..+-....+..+.|+++.|.+.+.+..+.. |+. .........+...|+++.|...++.+.+..+. +...+..+..
T Consensus 119 ~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~ 195 (409)
T TIGR00540 119 LNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEE 195 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 344455677888999999999999987643 443 34444578888999999999999999998633 6778889999
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHH---HhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHH
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDVFTYT-TLINGL---CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (343)
.+.+.|++++|.+.+..+.+.+.. +...+. ....++ ...+..+...+.+..+....+.. .+.+...+..+..
T Consensus 196 ~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~---~~~~~~l~~~~a~ 271 (409)
T TIGR00540 196 AYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH---RRHNIALKIALAE 271 (409)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH---HhCCHHHHHHHHH
Confidence 999999999999999999998754 333332 111111 22333333334444444432100 1247788899999
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCChhh---HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhC
Q 040261 172 GLCKEGFVDKAKELFLKMKDENINPDVVT---YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV--VTFNVIMNELCKN 246 (343)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 246 (343)
.+...|+.++|.+.+++..+.. |+... ...........++.+.+...++...+.. +-+. ....++...+.+.
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHc
Confidence 9999999999999999998864 33331 1222223344578889999998888762 3334 5666889999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 040261 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999654444578888899999999999999999999997643
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=7.1e-14 Score=110.18 Aligned_cols=291 Identities=13% Similarity=0.076 Sum_probs=214.6
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC--ccHHHHHHHHHHHhhcCc
Q 040261 25 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT--PDAVTFTSLIKGLCAESR 102 (343)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 102 (343)
.++....+.+++.+=.+.+...|.+.+...-+....+.....++++|+.+|+++.+..+= -|..+|..++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 444455677777777777777777666665566666667778889999999988876321 145566665544322222
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHH
Q 040261 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182 (343)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 182 (343)
..---+....+.+ --+.|...+.+-|+-.++.++|...|++..+.+ +....+|+.+..-|....+...|
T Consensus 315 Ls~LA~~v~~idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-------p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 315 LSYLAQNVSNIDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-------PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred HHHHHHHHHHhcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-------cchhHHHHHhhHHHHHhcccHHH
Confidence 1111111111111 234567777888888999999999999999876 45577899999999999999999
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
++.++...+-+ |.|-..|-.+.++|.-.+...=|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|.+....
T Consensus 384 i~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999998875 4588899999999999999999999999998863 556889999999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC----CC-Cc-cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040261 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN----GC-MR-DVFSYGILINGYCKNKEIEGALSLYSEM 329 (343)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 329 (343)
| ..+...+..|.+.|-+.++..+|...+++..+. |. .| .......|..-+.+.+++++|.......
T Consensus 462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 7 557788999999999999999999998876652 22 22 2233333556677777877776654443
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.9e-13 Score=102.95 Aligned_cols=279 Identities=15% Similarity=0.124 Sum_probs=220.2
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH------HHHHHHHHHHHhcCCcchHHHHH
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL------YTYNILINCFCKMGRVSPGFVVL 75 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~ 75 (343)
+.|-+|.+..+. +.++.-.|...|.+.|..++|+++.+.+.+. ||. .+...+..-|...|-++.|.++|
T Consensus 56 dlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 56 DLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred HHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 678888886664 8888999999999999999999999998863 432 23455677788899999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 040261 76 GRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV----FTYTTLINGLCRTGHTIVALNLFEEMANG 151 (343)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (343)
..+.+.+ .--......++..|-...+|++|+++-+++.+.+.++.. ..|..+...+....+.+.|..++.+..+.
T Consensus 131 ~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 131 NQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 9998754 334667888999999999999999999999988765443 24556667777788999999999999987
Q ss_pred CCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC
Q 040261 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231 (343)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 231 (343)
+ +..+.+-..+.+.....|+++.|.+.++.+.+.+..--+.+...+..+|.+.|+.++....+..+.+.. +
T Consensus 210 ~-------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 210 D-------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred C-------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 6 455667777889999999999999999999998755557788899999999999999999999998873 4
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC---CchHHHHHHHHHHHhC
Q 040261 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT---GRVNRAKELFVSMESN 297 (343)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 297 (343)
....-..+........-.+.|...+.+-.+. +|+...+..++..-... |...+-..+++.|...
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 4444455555555566667777776665554 79999999999865533 4466666677777643
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=4.4e-13 Score=113.88 Aligned_cols=318 Identities=13% Similarity=0.106 Sum_probs=233.9
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
+|+.++.+..|. +...|..|..+|-+.|+.+++...+-..-..+ +.|...|..+.....+.|++++|.-+|.+.++.
T Consensus 160 ~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~ 236 (895)
T KOG2076|consen 160 EILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQA 236 (895)
T ss_pred HHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 467777777764 78889999999999999988888775554433 456678888888888889999999999998887
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 040261 82 CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF----TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157 (343)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 157 (343)
. +++...+---...|-+.|+...|...|.++.....+.|.. ....+++.+...++.+.|.+.++.......
T Consensus 237 ~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~---- 311 (895)
T KOG2076|consen 237 N-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK---- 311 (895)
T ss_pred C-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc----
Confidence 5 3455556667778888899999999998888874422322 223345667777777888888888777332
Q ss_pred cccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC---------------------------CCCChhhHHHHHHHHhc
Q 040261 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN---------------------------INPDVVTYTSLIRGFCY 210 (343)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~ 210 (343)
-..+...++.++..+.+...++.+........... ..++... -.++-++.+
T Consensus 312 -~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 312 -DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred -ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 24456778888889999999999888877765511 1112222 122334445
Q ss_pred cCcHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHH
Q 040261 211 ANDWNEAKCLFIEMMDQGVQP--NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288 (343)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (343)
.+..+....+...+.+..+.| +...|.-+..++...|.+.+|+.++..+.....--+...|-.+..+|...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 555555555666666665333 466788889999999999999999999988755556778999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 289 ELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
+.++...... +.+...-..|...+.+.|++++|.+.+..+.
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999988763 3345555667778899999999999998876
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=3.4e-12 Score=99.12 Aligned_cols=271 Identities=13% Similarity=0.071 Sum_probs=220.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
..-.|-.-..+.-+.|+.+.+-..+.+.-+..-.++...+-...+.....|+...|..-.+++.+.+.. ++.......+
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r 195 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALR 195 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHH
Confidence 444566667777889999999999999887533566777888888999999999999999999987644 7788899999
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHH
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDV-------FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (343)
+|.+.|++.....+...+.+.|.-.+. .+|..+++-....+..+.-...|+..... ...++..-..
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-------lr~~p~l~~~ 268 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-------LRNDPELVVA 268 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-------hhcChhHHHH
Confidence 999999999999999999999865454 35677777777777777767777777665 3566778888
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 040261 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248 (343)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (343)
++.-+.++|+.++|.++.++..+.+..|+ ... ...+.+-++...-.+..+.-.+. .+.++..+.+|...|.+.+.
T Consensus 269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 269 YAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhH
Confidence 89999999999999999999998877665 222 23456778888877777776665 24456788899999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCc
Q 040261 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR 301 (343)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 301 (343)
+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++....-.+|
T Consensus 344 w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 344 WGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 99999999987775 7899999999999999999999999998876443333
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=6.1e-14 Score=115.28 Aligned_cols=278 Identities=15% Similarity=0.087 Sum_probs=217.7
Q ss_pred hHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC--CCCHHHHHHHHHHHHhcCCcchHHHHHH-HHH
Q 040261 3 IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYNILINCFCKMGRVSPGFVVLG-RIL 79 (343)
Q Consensus 3 i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~ 79 (343)
.|..+..+.. .+..+...+..+|...+++++|..+|+.+.+... .-+.+.|.+.+-.+-+ +-++.++. .+.
T Consensus 341 ~~~klp~h~~--nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 341 LFEKLPSHHY--NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLI 414 (638)
T ss_pred HHHhhHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHH
Confidence 4555444444 3568888999999999999999999999987431 1256678877765533 22333333 333
Q ss_pred HcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccc
Q 040261 80 RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159 (343)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (343)
... +-.+.+|-++.++|.-+++.+.|++.|++..+.+.. ...+|+.+..-+....+++.|...|+.....+
T Consensus 415 ~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~------- 485 (638)
T KOG1126|consen 415 DTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD------- 485 (638)
T ss_pred hhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-------
Confidence 332 446889999999999999999999999999987432 67889999888999999999999999987754
Q ss_pred cCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040261 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239 (343)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (343)
+.+-.+|-.+.-.|.+.++++.|+-.|+++.+-+ +-+.+....+...+.+.|+.++|+.+++++...+ +-|+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2334556667788999999999999999998876 3367777888888999999999999999998875 3344444445
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCC
Q 040261 240 MNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298 (343)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (343)
+..+...+++++|+..++++.+. ++.+...|..+...|.+.|+.+.|..-|.-+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 66777889999999999999987 35567788889999999999999999998888753
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=3.4e-12 Score=108.64 Aligned_cols=304 Identities=13% Similarity=0.087 Sum_probs=234.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCc
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (343)
....+...|++++|.+++.+.++.. +.+...|..|...|-+.|+.+++...+-.+...+ +-|...|..+.....+.|.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 3444556699999999999998865 5677899999999999999999988877666554 3367889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcc----hHHHHHHHHHhcCC
Q 040261 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI----TYSTITDGLCKEGF 178 (343)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~ 178 (343)
+.+|.-+|.+.++..+. +...+-.-...|-+.|+...|..-|.++....+ +.+.. .-..++..+...++
T Consensus 223 i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p------~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDP------PVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999988543 555666677889999999999999999998751 12222 22334566777888
Q ss_pred hHHHHHHHHHhhhC-CCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC---------------------------CC
Q 040261 179 VDKAKELFLKMKDE-NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG---------------------------VQ 230 (343)
Q Consensus 179 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~ 230 (343)
.+.|.+.++..... +-..+...++.++..+.+...++.+........... ..
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 89999998887652 223466778899999999999999998887776521 12
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHH
Q 040261 231 PNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR--PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGI 308 (343)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (343)
++..+ -.+.-++......+....+.....+.++. -+...|..+..+|...|++.+|..++..+......-+...|..
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 22222 12333445556666666666666666633 4567889999999999999999999999998755567789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 040261 309 LINGYCKNKEIEGALSLYSEMLSKGIRPTV 338 (343)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 338 (343)
+.++|...|.+++|.+.|+..+.. .|+.
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~--~p~~ 482 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLIL--APDN 482 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc--CCCc
Confidence 999999999999999999999855 4543
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=7.5e-13 Score=114.29 Aligned_cols=268 Identities=12% Similarity=0.022 Sum_probs=179.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHh---------hcCcHHHHHHHHHHHH
Q 040261 49 FPDLYTYNILINCFCK-----MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC---------AESRIMEAAALFTKLR 114 (343)
Q Consensus 49 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 114 (343)
+.+...|...+++... .+++++|...|++..+..+. +...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3455555555554322 23456888888888876422 4555555554443 2345788999999988
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 040261 115 AFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI 194 (343)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (343)
+.++. +...+..+...+...|++++|...++++.+.+ +.+...+..+..++...|++++|...+++..+.+.
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 87544 67778888888888999999999999988875 44566788888889999999999999999887642
Q ss_pred CCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 040261 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP-NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273 (343)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (343)
. +...+..++..+...|++++|...++++.+.. +| +...+..+..++...|+.++|...++++.... +.+....+.
T Consensus 404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~ 480 (553)
T PRK12370 404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNL 480 (553)
T ss_pred C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHH
Confidence 2 22233344445666788999999998887663 34 34556677788888999999999998876542 223444555
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhCC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 274 LMDGFCLTGRVNRAKELFVSMESNG-CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
+...|...| ++|...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 656667777 47777777665431 11222222 34445566776666665 7776654
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.64 E-value=1.7e-12 Score=112.09 Aligned_cols=266 Identities=12% Similarity=0.054 Sum_probs=141.9
Q ss_pred CChhhHHHHHHHHHh-----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhc---------CCcchHHHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAK-----NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKM---------GRVSPGFVVLGRILR 80 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~ 80 (343)
.+...|...+.+... .+++++|.++|++..+.. +.+...|..+..++... +++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 344445454444322 123456677777666543 22344455554444322 235566777777666
Q ss_pred cCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcccc
Q 040261 81 SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160 (343)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 160 (343)
.++. +...+..+...+...|++++|...+++..+.++. +...+..+..++...|++++|...+++..+.+ +
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-------P 403 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-------P 403 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------C
Confidence 5422 4556666666666667777777777777666432 44556666666777777777777777776654 1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 040261 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN-VVTFNVI 239 (343)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 239 (343)
.+...+..++..+...|++++|...++++.....+-+...+..+..++...|++++|...+.++... .|+ ....+.+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHH
Confidence 1222333334445556677777777766655432223444555666666677777777777665443 233 3333444
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 240 MNELCKNGKMDEASRLLELMIQIG-VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
...+...| ++|...++.+.+.. ..+....+ +-..+.-.|+-+.+..+ +++.+.
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 44555555 35555555554421 11111111 22334445555555554 555554
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.3e-12 Score=101.65 Aligned_cols=195 Identities=14% Similarity=0.111 Sum_probs=148.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHH
Q 040261 125 YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204 (343)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 204 (343)
|.-+..+|....+.++..+.|......+ +.++.+|..-..++.-.+++++|..=|++..... +-+...|-.+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-------p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl 434 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-------PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL 434 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-------CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 5556667777788888888888887765 5567778777777778888888888888887754 2245566666
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-------CCHHHHHHHHHH
Q 040261 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR-------PDASVYNTLMDG 277 (343)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~ 277 (343)
.-+..+.+.++++...|++..++ ++-.+..|+.....+...+++++|.+.|+..++.... +.+.+...++..
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 66677888999999999999887 5666889999999999999999999999998875311 112222333322
Q ss_pred HhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
- -.+++..|..++++..+.. +.....|..|...-.+.|+.++|+++|++..
T Consensus 514 q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 514 Q-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred c-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 3389999999999998864 3356788999999999999999999998764
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=2.7e-11 Score=100.01 Aligned_cols=303 Identities=11% Similarity=0.042 Sum_probs=159.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
+...|......--..|..++...+|+++...- +-....|......+...|+...|..++..+.+.... +...|...+.
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavK 626 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVK 626 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 44445444444444555555555555554421 222333444444444455555555555555544322 4445555555
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (343)
.-.....++.|..+|.+.... .|+...|.--+...--.+..++|.+++++..+.. +.-...|..+...+.+
T Consensus 627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-------p~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-------PDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-------CchHHHHHHHhHHHHH
Confidence 555555555555555554443 3344444444444444455555555555554442 2223344444444444
Q ss_pred cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 040261 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255 (343)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (343)
.++.+.|...|..-.+. .+-.+..|-.+...--+.|.+-.|..++++..-++ +-+...|-..++.-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444333221 12223334444444444444444444444444332 22344444444444444444444444
Q ss_pred HHHHHHc-----------------------------CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHH
Q 040261 256 LELMIQI-----------------------------GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306 (343)
Q Consensus 256 ~~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (343)
..++.+. ...-|+.+...+...|....++++|++.|.+..+.+ +....+|
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~w 854 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAW 854 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHH
Confidence 4333221 013456667778888888899999999999998864 3456788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 307 GILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 307 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
..+...+.++|.-++-.+++......
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 88999999999888888888887644
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.3e-11 Score=94.83 Aligned_cols=166 Identities=12% Similarity=0.049 Sum_probs=145.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040261 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241 (343)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (343)
.+.|...+...|+-.++.++|...|+...+.+. -....|+.+..-|....+...|..-+++.++-. +-|-..|-.|.+
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQ 406 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhH
Confidence 345666677778888999999999999998763 357789999999999999999999999999874 667889999999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 040261 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321 (343)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (343)
+|.-.+.+.-|+-.|+++.+.. +-|...|.+|..+|.+.++.++|.+.|.+....| ..+...+..|...|-+.++.++
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999875 6688999999999999999999999999999876 3366788999999999999999
Q ss_pred HHHHHHHHHh
Q 040261 322 ALSLYSEMLS 331 (343)
Q Consensus 322 a~~~~~~~~~ 331 (343)
|...|++-++
T Consensus 485 Aa~~yek~v~ 494 (559)
T KOG1155|consen 485 AAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHH
Confidence 9999887765
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.61 E-value=1.6e-12 Score=100.39 Aligned_cols=202 Identities=12% Similarity=0.078 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040261 51 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130 (343)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (343)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 34566666777777777777777777776653 224556666677777777777777777777665433 4556666677
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 040261 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210 (343)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (343)
.+...|++++|.+.+++...... .+.....+..+..++...|++++|...+.+..... +.+...+..+...+..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 77777777777777777765421 12233455666677777778888877777776653 2245566677777777
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
.|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 78888888777777765 234455566666777777788887777766654
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.61 E-value=2.5e-12 Score=99.33 Aligned_cols=198 Identities=15% Similarity=0.134 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH
Q 040261 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203 (343)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (343)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 33444444445555555555555444432 2223344444455555555555555555544432 123334444
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 040261 204 LIRGFCYANDWNEAKCLFIEMMDQGV-QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282 (343)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (343)
+...+...|++++|...++...+... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 45555555555555555555544311 1123344445556666666666666666666543 334455666666666677
Q ss_pred chHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777777666654 233455555566666666777777666665543
No 49
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=2.5e-12 Score=110.27 Aligned_cols=279 Identities=13% Similarity=0.073 Sum_probs=179.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc---CCCccH------HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC
Q 040261 49 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRS---CFTPDA------VTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119 (343)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 119 (343)
++.+...|.+...+...|++..|...|...... ...++. .+-..+.+..-..++++.|.+.|..+.+. .
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--h 526 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--H 526 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--C
Confidence 344555555555555556666666555555443 111111 11222334444445556666666655554 2
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCC
Q 040261 120 PD-VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN-INPD 197 (343)
Q Consensus 120 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 197 (343)
|. ...|..++......+...+|..+++.....+ ..++..+..+...+.+...+..|.+-|..+.+.- ..+|
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-------~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-------SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-------cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 22 2233333333333456667777777766654 3455666666667777777777777666655431 2245
Q ss_pred hhhHHHHHHHHhc------------cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 040261 198 VVTYTSLIRGFCY------------ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265 (343)
Q Consensus 198 ~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 265 (343)
+.+.-.|...|.+ .+..+.|+.+|.++++.. +-|...-+-+..+++..|++..|..+|....+.. .
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~ 677 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-S 677 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-h
Confidence 5554445544432 234678888888888874 5567777888888999999999999999998875 3
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC-CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 040261 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338 (343)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 338 (343)
....+|-.+.++|..+|++..|.++|+...+. .-..+......|.+++.+.|.+.+|.+.+.......+.-..
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 34567888999999999999999999876554 33457788889999999999999999998888766443333
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=3.6e-12 Score=100.87 Aligned_cols=281 Identities=14% Similarity=0.047 Sum_probs=207.5
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHH--HHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNI--LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (343)
..-+.++|+++.|++++.-+....-+.....-+. .++.+.--.++..|.++-+..+... ..++.....-.......|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 4457789999999999988876432222222222 2222223346777877777766542 223333333334445578
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHH
Q 040261 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181 (343)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (343)
++++|.+.|.+.......... ..-.+.-.+-..|+.++|+..|-++... +..+..+...+...|....+..+
T Consensus 505 d~dka~~~ykeal~ndasc~e-alfniglt~e~~~~ldeald~f~klh~i-------l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTE-ALFNIGLTAEALGNLDEALDCFLKLHAI-------LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHH-HHHHhcccHHHhcCHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHhhCHHH
Confidence 999999999999876433222 2233344577889999999999887654 35567788888899999999999
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
|++++.+.... ++.|+..++-+...|-+.|+-.+|+..+-.--+. ++.+..+...|...|....-+++++.+|++..-
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999887664 5668899999999999999999999887665554 567788888899999999999999999998765
Q ss_pred cCCCCCHHHHHHHHHH-HhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC
Q 040261 262 IGVRPDASVYNTLMDG-FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318 (343)
Q Consensus 262 ~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (343)
+.|+..-|..++.. +.+.|++.+|.++++...+. ++.|..+...|++.+...|-
T Consensus 655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 48999999887764 55789999999999998876 56688888888888877663
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=3.7e-12 Score=100.77 Aligned_cols=186 Identities=13% Similarity=0.119 Sum_probs=133.1
Q ss_pred cCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcH
Q 040261 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214 (343)
Q Consensus 135 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 214 (343)
.|++++|.+.+++....+. .-....-.+.-.+-..|+.++|++.|-++..- +..+...+..+...|-...+.
T Consensus 503 ngd~dka~~~ykeal~nda-------sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDA-------SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred cCcHHHHHHHHHHHHcCch-------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 4556666666666554430 11111222223455667777777777665442 123566666777777777788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 040261 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294 (343)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (343)
.+|++++.+.... ++.|+.....|...|-+.|+..+|.+.+-.--+. ++-+..+...|...|....-++++...|++.
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888887666554 4556888889999999999999998887554443 4678888888998999999999999999987
Q ss_pred HhCCCCccHHHHHHHHHHH-HhcCChHHHHHHHHHHHhC
Q 040261 295 ESNGCMRDVFSYGILINGY-CKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~ 332 (343)
.- +.|+..-|..++..| .+.|+++.|+.+|++...+
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66 469999999888765 5679999999999998654
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=1.3e-12 Score=98.91 Aligned_cols=231 Identities=16% Similarity=0.036 Sum_probs=191.4
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHH
Q 040261 91 TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170 (343)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (343)
+.+.++|.+.|.+.+|.+.++...+. .|-+.||..|-+.|.+..+++.|+.++.+-.+.. |-++.....+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-------P~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-------PFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-------CchhhhhhhhH
Confidence 56788999999999999999888876 5667788889999999999999999999988763 44555556778
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChh
Q 040261 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250 (343)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 250 (343)
+.+...++.++|.++++...+.. +.++.....+...|.-.++++-|+..++++++.|+ -+...|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchh
Confidence 88899999999999999988764 34677777777788888999999999999999984 47788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 040261 251 EASRLLELMIQIGVRPD--ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328 (343)
Q Consensus 251 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 328 (343)
-++.-|++....--.|+ ..+|-.+....+..||+..|.+.|+-...++ ..+...++.|.-.-.+.|+.++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999998877643344 4567777778888999999999999888764 34567888888888899999999999998
Q ss_pred HHhCC
Q 040261 329 MLSKG 333 (343)
Q Consensus 329 ~~~~~ 333 (343)
.....
T Consensus 455 A~s~~ 459 (478)
T KOG1129|consen 455 AKSVM 459 (478)
T ss_pred hhhhC
Confidence 87553
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=1.3e-12 Score=98.90 Aligned_cols=230 Identities=14% Similarity=0.074 Sum_probs=198.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHH
Q 040261 55 YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT-YTTLINGLC 133 (343)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 133 (343)
-+.+..+|.+.|-+.+|.+-++..++. .|-+.||..+-+.|.+..+...|+.++.+-.+. .|-.+| ...+...+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 366889999999999999999998876 567788999999999999999999999998876 444444 456788889
Q ss_pred hcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc
Q 040261 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213 (343)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (343)
..++.++|.++++...+.. +.++.....+...|.-.++++.|++.++++.+.|+. ++..|+.+.-+|.-.++
T Consensus 302 am~~~~~a~~lYk~vlk~~-------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 9999999999999999875 556777777778888899999999999999999875 78999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 040261 214 WNEAKCLFIEMMDQGVQPN--VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291 (343)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (343)
++-++.-|.+.+..--.|+ ..+|..+.......||+..|.+.|+-...++ ..+...++.|.-.-.+.|+++.|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 9999999999887643344 4567778888899999999999999998876 557788999998889999999999999
Q ss_pred HHHHhC
Q 040261 292 VSMESN 297 (343)
Q Consensus 292 ~~~~~~ 297 (343)
+.....
T Consensus 453 ~~A~s~ 458 (478)
T KOG1129|consen 453 NAAKSV 458 (478)
T ss_pred HHhhhh
Confidence 988875
No 54
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=8.7e-11 Score=98.59 Aligned_cols=297 Identities=12% Similarity=0.105 Sum_probs=210.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (343)
..--....+...|++++|++.++.-.. .+.............+.+.|+.++|..++..+++.++. |...|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHh
Confidence 333455677899999999999987544 34444566777889999999999999999999998632 5555666666652
Q ss_pred hc-----CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHccCCCCCccccCCcchHHHHHHH
Q 040261 99 AE-----SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI-VALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172 (343)
Q Consensus 99 ~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (343)
-. .+.+...++|+++...- |.......+.-.+.....+. .+..++..+...| + +.+|..+-..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------v---PslF~~lk~L 152 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG------V---PSLFSNLKPL 152 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC------C---chHHHHHHHH
Confidence 22 35677888999887763 33333333322222222232 3445555666655 2 4567777777
Q ss_pred HHhcCChHHHHHHHHHhhhC----C----------CCCCh--hhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-HHH
Q 040261 173 LCKEGFVDKAKELFLKMKDE----N----------INPDV--VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN-VVT 235 (343)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 235 (343)
|......+-..+++...... + -+|+. .++..+.+.|...|++++|+.+++..+++ .|+ ...
T Consensus 153 y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~el 230 (517)
T PF12569_consen 153 YKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVEL 230 (517)
T ss_pred HcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHH
Confidence 77665655556666554322 1 12333 34566678888999999999999999987 455 778
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHH------HH--H
Q 040261 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF------SY--G 307 (343)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~ 307 (343)
|..-.+.+-..|++.+|...++.+...+ .-|..+-+-.+..+.++|++++|.+++..+.+.+..|... .| .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 8888999999999999999999999986 4577777788889999999999999999998876433221 22 3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 040261 308 ILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 308 ~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
....+|.+.|++..|++-|..+.+
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 446789999999999887776654
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=2.3e-12 Score=109.46 Aligned_cols=254 Identities=14% Similarity=0.118 Sum_probs=172.1
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
+++-.+...|.. |+..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 356778888888 88899999999999999999888 8888887777778889999999888888877765
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHH---HHHHHHHHH----hcCCCCCHHHH--------------HHHHHHHHhcCChHH
Q 040261 82 CFTPDAVTFTSLIKGLCAESRIME---AAALFTKLR----AFGCKPDVFTY--------------TTLINGLCRTGHTIV 140 (343)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~ 140 (343)
.|.+.+|..+..+|...||... +.+.+..+. ..|+-....-+ ...+....-.|.++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6788899999999999998654 333222221 12221111111 112222233444445
Q ss_pred HHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHH
Q 040261 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF-VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC 219 (343)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 219 (343)
+++++..+..... .. .+..+++-+..... +++-....+...+ .|++.+|..++.+-..+|+.+.|..
T Consensus 158 llkll~~~Pvsa~-------~~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAW-------NA--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHhhCCcccc-------cc--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHH
Confidence 5554444332210 01 11112443333322 3333333333333 4788888888888888888888988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 040261 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283 (343)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (343)
++.+|.+.|++.+.+-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888888888888877777665 77888888888888888888888888888777777554
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.3e-11 Score=96.59 Aligned_cols=287 Identities=14% Similarity=0.072 Sum_probs=221.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.++...-...+.+...+++.+..++.+...+.. ++....+..-|.++...|+..+-+.+-.++.+.- +..+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 455566666777788889999999999888765 6677777777778889999888888888888764 44678888888
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
--|.-.|+..+|.+.|.+....+.. =...|......|+-.+..++|...+..+.+.- +-...-+.-+.--|.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-------~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-------PGCHLPSLYLGMEYM 391 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-------cCCcchHHHHHHHHH
Confidence 8888889999999999887765322 24578888899999999999998888877653 223333444556678
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc--CC----CCCHHHHHHHHHHHHhCCC
Q 040261 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ--GV----QPNVVTFNVIMNELCKNGK 248 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~~~ 248 (343)
+.++...|.+.|.+..... |-|+..++-+.-.....+.+.+|..+|+..+.. .+ .--..+++.|..+|.+.+.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 8899999999998887653 446777787877777888999999999887632 01 1134567888899999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 040261 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315 (343)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (343)
+++|+..++...... +.+..++..+.-.|...|+++.|.+.|.+.... .|+..+...++..+..
T Consensus 471 ~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 999999999988875 678889999988999999999999999988764 5777666666665443
No 57
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.55 E-value=8.1e-11 Score=101.32 Aligned_cols=307 Identities=11% Similarity=-0.005 Sum_probs=204.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF--PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (343)
.++.+.+.|...|.-.|+++.++.+...+...... .-...|..+.+++-..|++++|..+|.+..+....--...+..
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 47778888888888888888888888877654311 1233577788888888888888888877776532211334455
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHccCCCCCccccCCcchHHH
Q 040261 93 LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG----HTIVALNLFEEMANGNGEFGVVCKPDAITYST 168 (343)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (343)
+...+.+.|+.+.+...|+.+...... +..+...+...|...+ ..+.|..++.+..... +.+...|..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-------~~d~~a~l~ 419 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-------PVDSEAWLE 419 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-------cccHHHHHH
Confidence 777888888888888888888776322 5556666666666654 4566777777766653 556677777
Q ss_pred HHHHHHhcCChHHHHHHHHHhh----hCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc---CCCCCH------HH
Q 040261 169 ITDGLCKEGFVDKAKELFLKMK----DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ---GVQPNV------VT 235 (343)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~ 235 (343)
+...+....-+.. +.++..+. ..+..+.+...|.+...+...|+++.|...|...... ...++. .+
T Consensus 420 laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 420 LAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 7776665444433 66665533 3344566788888888888888888888888877654 112222 22
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 040261 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315 (343)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (343)
-..+.......++.+.|...|..+.+.. +--...|..++......+...+|...++...... ..++..+..+...+..
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHh
Confidence 3335666677778888888888887753 2223445555434444567778888888776642 4456666666767777
Q ss_pred cCChHHHHHHHHHHHhC
Q 040261 316 NKEIEGALSLYSEMLSK 332 (343)
Q Consensus 316 ~~~~~~a~~~~~~~~~~ 332 (343)
..++.-|.+-|+...+.
T Consensus 577 k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKK 593 (1018)
T ss_pred hhhhcccccHHHHHHhh
Confidence 77777777766666554
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.1e-11 Score=96.69 Aligned_cols=277 Identities=10% Similarity=0.033 Sum_probs=220.6
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040261 50 PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129 (343)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (343)
.+......-..-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+-.++.+.-+. ...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHH
Confidence 344555556666778899999999999998864 556667777777888999988888887888877433 677899999
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 040261 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209 (343)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (343)
--|...|+..+|.+.|.+....++ .-...|..+...+.-.|..++|+..+....+.- +-...-+--+.--|.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~-------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDP-------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYM 391 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCc-------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHH
Confidence 999999999999999999988763 335689999999999999999999998876541 112222333445677
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHhcCCc
Q 040261 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI----G--VRPDASVYNTLMDGFCLTGR 283 (343)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~ 283 (343)
+.++.+-|...|.+..... +-|+...+.+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 8899999999999988762 556778888888878889999999999887732 1 11245678999999999999
Q ss_pred hHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc
Q 040261 284 VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTVVT 340 (343)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~t 340 (343)
+++|+..+++..... +.+..++.++.-.|...|+++.|...|.+.+ .+.||..+
T Consensus 471 ~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~ 524 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIF 524 (611)
T ss_pred HHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHH
Confidence 999999999988763 5688999999999999999999999999988 66787643
No 59
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.52 E-value=8.3e-10 Score=91.50 Aligned_cols=264 Identities=11% Similarity=0.003 Sum_probs=164.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 040261 55 YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134 (343)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (343)
|..-...|.+.+.++-|..+|...++-- +.+...|......--..|..++...++++....-.+ ....|......+..
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWK 596 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHh
Confidence 3333344444444444444554444431 223444444444444445555556666665554222 34445555555666
Q ss_pred cCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcH
Q 040261 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214 (343)
Q Consensus 135 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 214 (343)
.|+...|..++.+..+.. +.+...|..-+.......+++.|..+|.+....+ |+...|.--+...--.+..
T Consensus 597 agdv~~ar~il~~af~~~-------pnseeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-------PNSEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNV 667 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhH
Confidence 677777777777766654 3355666666777777777777777777666543 4555555555555556677
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 040261 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294 (343)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (343)
++|.+++++.++. ++.-...|..+.+.+.+.++.+.|...|..-.+. ++-....|..|...=-+.|.+-+|..++++.
T Consensus 668 eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 7777777777665 2333556666677777777777777766554443 2444556677776667778888888888887
Q ss_pred HhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 295 ESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.-.+ +.+...|...++.-.+.|..++|..+..+.++.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7665 457788888888888999988888777776654
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=4.8e-12 Score=107.59 Aligned_cols=260 Identities=17% Similarity=0.202 Sum_probs=163.6
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 040261 38 SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (343)
.++-.+...|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788899999999999999999999999998 9998888777888899999999988888887776
Q ss_pred CCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHccCCCCCcccc------------CCcchHHHHHHHHHhcCChHHH
Q 040261 118 CKPDVFTYTTLINGLCRTGHTIV---ALNLFEEMANGNGEFGVVCK------------PDAITYSTITDGLCKEGFVDKA 182 (343)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a 182 (343)
.|...+|..|..+|...||... +.+.+..+...-...+...+ .....-...+....-.|.++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5788899999999999998754 33322222222111110000 0000111222223334455555
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhccC-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 183 KELFLKMKDENINPDVVTYTSLIRGFCYAN-DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
++++..+....... + +..+++-+.... .+++...+.+...+ .|+..+|..++.+....|+.+.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~~-p--~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNA-P--FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccc-h--HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 55554443221100 0 111233333222 23333333333322 46777777777777777777777777777777
Q ss_pred cCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC
Q 040261 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318 (343)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (343)
.|++.+..-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777666666666544 66666777777777777777777777766666666544
No 61
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.5e-09 Score=86.78 Aligned_cols=321 Identities=16% Similarity=0.176 Sum_probs=197.0
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL-YTYNILINCFCKMGRVSPGFVVLGRILR 80 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (343)
+||++...... .+...|-..+..-.++.++..|..+|++.+.. -|-+ ..|...+.+--..|++..|.++|++..+
T Consensus 94 Sv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~ 169 (677)
T KOG1915|consen 94 SVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME 169 (677)
T ss_pred HHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc
Confidence 36777776664 47777888888888888888999998888763 2333 3566666666677888888899888876
Q ss_pred cCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC----
Q 040261 81 SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG---- 156 (343)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 156 (343)
- +|+...|++.++.=.+...++.|..+|++..-. .|+..+|......=.+.|....+..+++...+.-++..
T Consensus 170 w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 170 W--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred C--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4 788888999888888888888888888887754 57777777777776777777766666666554322100
Q ss_pred -----------------------------c-----------------------------------------cccCCcchH
Q 040261 157 -----------------------------V-----------------------------------------VCKPDAITY 166 (343)
Q Consensus 157 -----------------------------~-----------------------------------------~~~~~~~~~ 166 (343)
+ ..+.|-.+|
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 0 001122223
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCh--hhHHHHH--------HHHhccCcHHHHHHHHHHHHH----------
Q 040261 167 STITDGLCKEGFVDKAKELFLKMKDENINPDV--VTYTSLI--------RGFCYANDWNEAKCLFIEMMD---------- 226 (343)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~---------- 226 (343)
--.++.-...|+.+...++|++.... ++|-. ..|...+ -.-....+.+.+.++++..++
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFa 404 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFA 404 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHH
Confidence 33444444556666666666665543 23311 0111111 001122334444444433322
Q ss_pred --------------------------cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 040261 227 --------------------------QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280 (343)
Q Consensus 227 --------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (343)
.|..|...+|...|..-.+.++++.+..++++.++.+ +.+..+|......=..
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHH
Confidence 1234455555555555556667777777777777665 5566666666666666
Q ss_pred CCchHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 281 TGRVNRAKELFVSMESNGC-MRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.|+.+.|..+|+-..++.. ......|...|+.-...|.++.|..+|+++++.
T Consensus 484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 7777777777777666421 112334555555556677888888888887765
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=4.7e-10 Score=81.10 Aligned_cols=206 Identities=13% Similarity=0.025 Sum_probs=149.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHH
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (343)
+...+.-.|.+.|+...|..-+++.++..+. +..++..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhh
Confidence 4455667778888888888888888877433 56677788888888888888888888888764 456677788
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040261 169 ITDGLCKEGFVDKAKELFLKMKDEN-INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247 (343)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (343)
....+|..|++++|...|++..... ..-...+|..+.-+..+.|+++.|...+++.++.. +-...+...+.....+.|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcc
Confidence 8888888888888888888876642 12235667777777788888888888888887763 333556667777777888
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHH
Q 040261 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY 306 (343)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (343)
++..|..+++.....+ .++....-..|+.-...|+.+.+.+.=..+.+. .|...-+
T Consensus 188 ~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 188 DYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred cchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 8888888888877766 377777777777777778877777766666654 3444433
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.1e-09 Score=85.97 Aligned_cols=288 Identities=16% Similarity=0.053 Sum_probs=216.5
Q ss_pred cCChhHHHHHHHHhHh-CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCcc-HHHHHHHHHHHhhcCcHHHHH
Q 040261 30 NKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD-AVTFTSLIKGLCAESRIMEAA 107 (343)
Q Consensus 30 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 107 (343)
.++...|...+-.+.. ..++.|......+..++...|+.++|...|++....+ |+ ........-.+.+.|+.++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 3444444444443332 2345677788899999999999999999999987653 33 333333444556788888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHH
Q 040261 108 ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187 (343)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (343)
.+...+.... +.+...|..-+..+...++++.|+.+-++.++.+ +.+...+..-...+...+++++|.-.|+
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-------~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-------PRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-------cccchHHHhccHHHHhccchHHHHHHHH
Confidence 8887776542 1244455556666777889999999999998875 4556677777788899999999999999
Q ss_pred HhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hCCChhHHHHHHHHHHHcCCC
Q 040261 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM-NELC-KNGKMDEASRLLELMIQIGVR 265 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~ 265 (343)
...... |-+...|.-++.+|...|.+.+|..+-+...+. ++.+..+...+. ..+. ...--++|.++++...+.. +
T Consensus 359 ~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P 435 (564)
T KOG1174|consen 359 TAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-P 435 (564)
T ss_pred HHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-C
Confidence 887653 346889999999999999999999888777665 345666666553 3332 3344678999998887763 3
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 266 PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.-....+.+...+...|..+.+..++++.... .||....+.|.+.+...+.+++|+..|...+..
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33567778888999999999999999998875 689999999999999999999999999888744
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=3.6e-10 Score=81.66 Aligned_cols=193 Identities=14% Similarity=0.052 Sum_probs=88.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 040261 58 LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137 (343)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (343)
+.-.|...|+...|..-+++.++..+. +..+|..+...|.+.|+.+.|.+.|++..+..+. +..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 334444555555555555555544311 3444444444555555555555555554444322 33444444444555555
Q ss_pred hHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHH
Q 040261 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217 (343)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 217 (343)
+++|...|++...... ......+|..+.-+..+.|+.+.|...|++..+... -...+...+.......|++-.|
T Consensus 119 ~~eA~q~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 119 PEEAMQQFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hHHHHHHHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 5555555555444321 122234444444445555555555555555444321 1233344444444455555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 040261 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259 (343)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (343)
...++.....+. ++..+.-..|+.....|+.+.+-++=..+
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 555555444432 44444444444444455554444443333
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.45 E-value=4.9e-09 Score=86.44 Aligned_cols=307 Identities=11% Similarity=-0.003 Sum_probs=194.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL-FPDL-YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (343)
...-.|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+..+. +...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 4566788888888888999988777777654321 1222 22233344567789999999999999886432 4444442
Q ss_pred ---HHHHHhhcCcHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHH
Q 040261 93 ---LIKGLCAESRIMEAAALFTKLRAFGCKPD-VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168 (343)
Q Consensus 93 ---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (343)
........+....+.+.++.. ....|+ ......+...+...|++++|...+++..+.. +.+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~~~~~~~ 153 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDDAWAVHA 153 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCcHHHHH
Confidence 111112234555555555541 112233 3444566778899999999999999999875 455677888
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCC-CCCh--hhHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHH
Q 040261 169 ITDGLCKEGFVDKAKELFLKMKDENI-NPDV--VTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-QPNVVTF-N--VIMN 241 (343)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~ 241 (343)
+..++...|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 89999999999999999999876532 1222 3455778889999999999999999865432 1222211 1 2333
Q ss_pred HHHhCCChhHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCC------c--cHHHHHH
Q 040261 242 ELCKNGKMDEASRLLELMIQI---GV--RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM------R--DVFSYGI 308 (343)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~ 308 (343)
.+...|....+.++ +.+... .. ............++...|+.+.|..+++.+...... . .......
T Consensus 234 ~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l 312 (355)
T cd05804 234 RLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA 312 (355)
T ss_pred HHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH
Confidence 34445544444433 222111 10 111122235667788999999999999988763211 1 1122222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 040261 309 LINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
...++...|++++|.+.+......
T Consensus 313 ~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 313 EALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334467899999999999888754
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=5.3e-10 Score=88.86 Aligned_cols=195 Identities=15% Similarity=0.023 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHH
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (343)
.|..+...+...|++++|...|++..+..+. +...|..+...+...|++++|...|++..+.. +.+..++..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~ 137 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAYLN 137 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 3444555555556666666555555554332 44555555555666666666666666555543 223445555
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 040261 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248 (343)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (343)
+..++...|++++|.+.|+...+.. |+..........+...+++++|...+....... .|+...+ . ......|+
T Consensus 138 lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~ 211 (296)
T PRK11189 138 RGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGK 211 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccC
Confidence 5555555566666666665555432 222111111122233445556655554433221 2221111 1 11222333
Q ss_pred hhHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCC
Q 040261 249 MDEASRLLELMIQI---GV---RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298 (343)
Q Consensus 249 ~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (343)
...+ ..+..+.+. .. +.....|..+...+.+.|++++|...|++..+.+
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 212 ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3332 233333211 00 1123455556666666666666666666665543
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.44 E-value=1.4e-10 Score=96.25 Aligned_cols=244 Identities=18% Similarity=0.115 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHc-----C-CCccHH-HHHHHHHHHhhcCcHHHHHHHHHHHHhc-----CC-
Q 040261 52 LYTYNILINCFCKMGRVSPGFVVLGRILRS-----C-FTPDAV-TFTSLIKGLCAESRIMEAAALFTKLRAF-----GC- 118 (343)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 118 (343)
..+...+...|...|+++.|..++++.++. | ..|... ..+.+...|...+++.+|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346667889999999999999999998764 2 123332 3445777888999999999999988653 21
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCc-chHHHHHHHHHhcCChHHHHHHHHHhhhC---C
Q 040261 119 KP-DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA-ITYSTITDGLCKEGFVDKAKELFLKMKDE---N 193 (343)
Q Consensus 119 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 193 (343)
.| -..+++.|..+|.+.|++++|...++...+..........+.. ..++.+...+...+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 2346778888999999999998888776543211000012222 34566677788889999998888765432 1
Q ss_pred CCC----ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC----C--CC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 194 INP----DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG----V--QP-NVVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 194 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
+.+ -..+++.+...|...|++++|.++++.++... . .+ ....++.+...|.+.+.+..|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 24678888888899999999999888876541 1 12 2456677888888888888888888776543
Q ss_pred ----CC--CCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 040261 263 ----GV--RPDASVYNTLMDGFCLTGRVNRAKELFVSME 295 (343)
Q Consensus 263 ----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (343)
|. +-...+|..|...|.+.|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 21 2224678888888889999999888887765
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.44 E-value=5.5e-11 Score=98.67 Aligned_cols=247 Identities=19% Similarity=0.167 Sum_probs=180.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-----CC-CCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHc-----C
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI-----GL-FPDLY-TYNILINCFCKMGRVSPGFVVLGRILRS-----C 82 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 82 (343)
.-..+...+...|...|+++.|.++++...+. |. .|... ..+.+...|...+++.+|..+|+++... |
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 34556777999999999999999999987663 21 23333 3444778899999999999999998753 2
Q ss_pred C-Cc-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc-----CCC-CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 040261 83 F-TP-DAVTFTSLIKGLCAESRIMEAAALFTKLRAF-----GCK-PDV-FTYTTLINGLCRTGHTIVALNLFEEMANGNG 153 (343)
Q Consensus 83 ~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 153 (343)
. .| -..+++.|..+|.+.|++++|...+++..+. |.. |.. ..++.+...+...+++++|..+++...+...
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1 12 2456788888999999999998888776532 211 222 2456677889999999999999887655432
Q ss_pred CCCcccc-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhC-----C--CCCChhhHHHHHHHHhccCcHHHHHHHHHHHH
Q 040261 154 EFGVVCK-PDAITYSTITDGLCKEGFVDKAKELFLKMKDE-----N--INPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225 (343)
Q Consensus 154 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (343)
....... .-..+++.|...|.+.|++++|.++++++... + ..-....++.+...|.+.+++.+|..+|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1000011 22468899999999999999999999987543 1 11224567888899999999999988887654
Q ss_pred Hc----CC-CCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 226 DQ----GV-QPN-VVTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 226 ~~----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
.. |. .|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 32 21 233 57889999999999999999999988764
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.43 E-value=8.5e-10 Score=87.69 Aligned_cols=219 Identities=12% Similarity=0.037 Sum_probs=138.9
Q ss_pred cCChhHHHHHHHHhHhCC-CCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHH
Q 040261 30 NKHYDTVLSLFKRLNSIG-LFPD--LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106 (343)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (343)
.++.+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|++..+..+ .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 445566777777766432 1122 34577777778888888888888888887643 3577788888888888888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHH
Q 040261 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELF 186 (343)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (343)
...|++..+..+. +..++..+..++...|++++|.+.+++..+.. |+..........+...++.++|...|
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--------PNDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 8888888876433 45667777777888888888888888887754 32222222233344567788888888
Q ss_pred HHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc---CC--C-CCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 040261 187 LKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ---GV--Q-PNVVTFNVIMNELCKNGKMDEASRLLELMI 260 (343)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (343)
++..... .|+...+ .+... ..|+...+ ..+..+.+. .+ . .....|..+...+.+.|++++|...|++..
T Consensus 189 ~~~~~~~-~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 189 KQRYEKL-DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhhC-CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6654332 2222222 22222 23443333 233333321 10 1 123567778888888888888888888888
Q ss_pred HcC
Q 040261 261 QIG 263 (343)
Q Consensus 261 ~~~ 263 (343)
+.+
T Consensus 264 ~~~ 266 (296)
T PRK11189 264 ANN 266 (296)
T ss_pred HhC
Confidence 765
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.8e-10 Score=92.08 Aligned_cols=153 Identities=13% Similarity=0.039 Sum_probs=75.1
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHH
Q 040261 29 KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108 (343)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (343)
-.|+...|.+-|+..+..... +...|..+..+|....+.++....|.+..+.+.. |+.+|..-.....-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 345555555555555543311 1222444444555555555555555555544322 44445444444444555555555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 040261 109 LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188 (343)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (343)
-|++.++..+. +...|..+.-+..+.+.++++...|++.... +|.-+.+|+....++...++++.|.+.|+.
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-------FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 55555544322 3334444444445555555555555555554 234445555555555555555555555555
Q ss_pred hhh
Q 040261 189 MKD 191 (343)
Q Consensus 189 ~~~ 191 (343)
...
T Consensus 488 ai~ 490 (606)
T KOG0547|consen 488 AIE 490 (606)
T ss_pred HHh
Confidence 433
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=1e-12 Score=73.74 Aligned_cols=49 Identities=43% Similarity=0.814 Sum_probs=33.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 63 (343)
||..+||.++.+|++.|++++|.++|++|.+.|++||..+|+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4566666666666666666666666666666666666666666666665
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=1.2e-12 Score=73.45 Aligned_cols=49 Identities=49% Similarity=0.959 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040261 85 PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133 (343)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (343)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=6.8e-09 Score=87.44 Aligned_cols=262 Identities=13% Similarity=0.101 Sum_probs=185.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--
Q 040261 58 LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT-- 135 (343)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 135 (343)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++. +..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 345567889999999999886554 3334666777889999999999999999999999643 455555565555222
Q ss_pred ---CChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCCh-HHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc
Q 040261 136 ---GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV-DKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211 (343)
Q Consensus 136 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (343)
.+.+....+++++.... |...+...+.-.+.....+ ..+...+..+...|+|+ +|+.+-..|...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~ 156 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDP 156 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcCh
Confidence 25677888999887764 3333333333222222223 34455666677778643 566666666655
Q ss_pred CcHHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040261 212 NDWNEAKCLFIEMMDQ----G----------VQPNV--VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275 (343)
Q Consensus 212 ~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 275 (343)
....-...++...... + -+|+. .++..+.+.|-..|++++|+.++++.+++. +..+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5555555666555432 1 13444 344666788899999999999999999985 44478899999
Q ss_pred HHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 040261 276 DGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGI 334 (343)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (343)
+.+-+.|++.+|.+.++...... .-|...-+-.+..+.+.|+.++|.+++......+.
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999999999864 23455555566778899999999999988876654
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.5e-09 Score=81.39 Aligned_cols=273 Identities=14% Similarity=0.043 Sum_probs=208.0
Q ss_pred cCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHH
Q 040261 10 MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88 (343)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (343)
....|.|+.....+..++...|+.++|+..|++....+ |+ ..........+.+.|+.+....+...+.... .....
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~ 301 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTAS 301 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchh
Confidence 33445788999999999999999999999999987643 43 2333333444567888888888887777642 23444
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHH
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (343)
.|-.-+.......+++.|+.+-++.++.+.. +...+..-...+...+++++|.-.|+...... |-+..+|..
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-------p~rL~~Y~G 373 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-------PYRLEIYRG 373 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-------hhhHHHHHH
Confidence 5555555566778999999999998887533 55666666788899999999999999988864 567899999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH-HHH-hccCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 040261 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI-RGF-CYANDWNEAKCLFIEMMDQGVQPN-VVTFNVIMNELCK 245 (343)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 245 (343)
|+..|...|...+|.-.-....+. ++-+..+.+.+. ..| ....--++|.++++...+. .|+ ....+.+...+..
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHh
Confidence 999999999999998776654443 233556665552 222 2233457888888887765 555 5566778888999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCC
Q 040261 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298 (343)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (343)
.|..+.++.++++.... .||....+.|.+.+...+.+.+|.+.|....+.+
T Consensus 451 Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred hCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999998775 7899999999999999999999999999888763
No 75
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=4.2e-08 Score=78.71 Aligned_cols=300 Identities=12% Similarity=0.090 Sum_probs=224.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (343)
...|-...+--..+++++.|..+|++.+... ..+...|...+.+-.+...+..|..++++.+..-+.. ...|...+..
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-dqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-DQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-HHHHHHHHHH
Confidence 3344444444456778899999999998765 4677888889999899999999999999998863332 3345555555
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhc
Q 040261 97 LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176 (343)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (343)
=-..|+...|.++|++..+- .|+..+|.+.++.=.+.+.++.|..++++..- ++|+..+|....+.-.+.
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhc
Confidence 55679999999999998876 89999999999999999999999999999987 679999999999999999
Q ss_pred CChHHHHHHHHHhhhC-C-CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChhHH
Q 040261 177 GFVDKAKELFLKMKDE-N-INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN--VVTFNVIMNELCKNGKMDEA 252 (343)
Q Consensus 177 ~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a 252 (343)
|+...+..+|+...+. | -..+...+.+...--.++..++.|..+++-.++. ++.+ ...|..+...--+-|+....
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhh
Confidence 9999999999987664 1 0112344555555556678899999999998887 3333 44555555554556765554
Q ss_pred HHH--------HHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccH--HHHHHHH-----HHH---H
Q 040261 253 SRL--------LELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV--FSYGILI-----NGY---C 314 (343)
Q Consensus 253 ~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~-----~~~---~ 314 (343)
... ++.+++.+ +-|-.+|-..++.-...|+.+...+++++.... ++|-. ..|...| -+| .
T Consensus 300 Ed~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred HHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 433 33444444 667889999999889999999999999999886 34422 2232222 122 3
Q ss_pred hcCChHHHHHHHHHHHh
Q 040261 315 KNKEIEGALSLYSEMLS 331 (343)
Q Consensus 315 ~~~~~~~a~~~~~~~~~ 331 (343)
...+.+.+.++|+..++
T Consensus 378 e~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLD 394 (677)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 46788999999998886
No 76
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.28 E-value=1.2e-07 Score=73.13 Aligned_cols=305 Identities=12% Similarity=0.058 Sum_probs=223.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHH-HHH
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT-FTS 92 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 92 (343)
|.++.-..-+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+-..|+.-+.+.++. .||-.. -..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 3456666778888999999999999999888743 222334445556788899999999999998875 566332 223
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCCCCH--HH------------HHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 040261 93 LIKGLCAESRIMEAAALFTKLRAFGCKPDV--FT------------YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158 (343)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 158 (343)
-...+.+.|.+++|..-|+...+....-.. .. ....+..+.-.|+...|+.....+.+..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~------ 185 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ------ 185 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC------
Confidence 345678899999999999999887432111 11 2233445667899999999999998874
Q ss_pred ccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHH---
Q 040261 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT--- 235 (343)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 235 (343)
+-+...+..-..+|...|++..|+.=++...+.. ..+..++--+-..+...|+.+.++..+++.++. .|+...
T Consensus 186 -~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~ 261 (504)
T KOG0624|consen 186 -PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP 261 (504)
T ss_pred -cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH
Confidence 5678888888999999999999998888876653 235667777778888999999999999988875 455322
Q ss_pred -HHHH---------HHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCcc
Q 040261 236 -FNVI---------MNELCKNGKMDEASRLLELMIQIGVRPD---ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302 (343)
Q Consensus 236 -~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (343)
|-.+ +......+++.++..-.+...+...... ...+..+-.++...+++.+|++...+.... .|+
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~ 339 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--Cch
Confidence 2111 1223456777778777777776532211 233455666777889999999999999875 354
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 303 -VFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 303 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
..++.--..+|.-...++.|+.-|+...+.+
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7788888889999999999999999887653
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.26 E-value=7.2e-08 Score=79.54 Aligned_cols=269 Identities=13% Similarity=-0.007 Sum_probs=166.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCcc-HHHHHHH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK----MGRVSPGFVVLGRILRSCFTPD-AVTFTSL 93 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 93 (343)
........+...|++++|..++++..+.. +.+...+.. ...+.. .+....+.+.+... ....|+ ......+
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~ 120 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHH
Confidence 34444566778999999999999988754 334444442 222333 34455555555441 112233 3344456
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCc--chHHHHHH
Q 040261 94 IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA--ITYSTITD 171 (343)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 171 (343)
...+...|++++|.+.+++..+.... +...+..+..++...|++++|...+++.....+. .++. ..|..+..
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~ 194 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHH
Confidence 67888999999999999999988543 5667888899999999999999999998876421 1222 34557888
Q ss_pred HHHhcCChHHHHHHHHHhhhCCC-CCChhhH-H--HHHHHHhccCcHHHHHHH--H-HHHHHcCC-CCCHHHHHHHHHHH
Q 040261 172 GLCKEGFVDKAKELFLKMKDENI-NPDVVTY-T--SLIRGFCYANDWNEAKCL--F-IEMMDQGV-QPNVVTFNVIMNEL 243 (343)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~ 243 (343)
.+...|++++|..++++...... .+..... + .++..+...|....+.+. + ........ ............++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 99999999999999999854322 1111111 1 222233333432222222 1 11111100 11112223566777
Q ss_pred HhCCChhHHHHHHHHHHHcCCC------C--CHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 244 CKNGKMDEASRLLELMIQIGVR------P--DASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
...|+.+.|..+++.+...... . ..........++...|+.++|.+.+......
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999988764312 0 1122222333456889999999999877653
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.25 E-value=1.2e-09 Score=85.70 Aligned_cols=251 Identities=17% Similarity=0.128 Sum_probs=143.2
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHH
Q 040261 25 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104 (343)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (343)
+.+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+ +..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445677777776555 22222122334455566777777775543 33333332 556655555555554434455
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHH
Q 040261 105 EAAALFTKLRAFGCKP-DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183 (343)
Q Consensus 105 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 183 (343)
.++.-+++....+... +..........+...|++++|++++... .+.......+.++.+.++++.|.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~lE~~al~Vqi~L~~~R~dlA~ 151 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------GSLELLALAVQILLKMNRPDLAE 151 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------TCHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------CcccHHHHHHHHHHHcCCHHHHH
Confidence 5555554443333222 2222223334556677888887766542 23456666777788888888888
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 040261 184 ELFLKMKDENINPDVVTYTSLIRGFCY----ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259 (343)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (343)
+.++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..+....|++++|..++.+.
T Consensus 152 k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 152 KELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888877643 33344444444332 33577888888887654 4567777777788888888888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHhcCCch-HHHHHHHHHHHhC
Q 040261 260 IQIGVRPDASVYNTLMDGFCLTGRV-NRAKELFVSMESN 297 (343)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 297 (343)
.+.+ +-++.+...++.+....|+. +.+.+.+.++...
T Consensus 228 l~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 228 LEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 6654 44566666677777777766 5666777777653
No 79
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=1.1e-08 Score=77.13 Aligned_cols=195 Identities=13% Similarity=0.142 Sum_probs=128.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHH-HHHHH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS-LIKGL 97 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 97 (343)
-|...+..+.+..++..|++++....+.. +.+......+..+|....++..|...++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 37777888888999999999998877654 336777888889999999999999999998765 344443432 34556
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh
Q 040261 98 CAESRIMEAAALFTKLRAFGCKPDVFT--YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175 (343)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (343)
.+.+.+..|+++...|.+. ++... ...-.......+++..+..++++....+ +..+.+.......+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYK 156 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccchhccchheeec
Confidence 6778888999988887653 12111 1111222345667777777777665332 33444444555567
Q ss_pred cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 040261 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229 (343)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 229 (343)
.|+++.|.+-|....+-+.--....|+..+ ++.+.+++..|++...+++++|+
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 777777777777766543222355566554 44566777777777777776654
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=4.5e-07 Score=75.66 Aligned_cols=100 Identities=9% Similarity=0.089 Sum_probs=71.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---hhhHHHHHHHHhccCcHHHHHHHHHHHHHcCC-----------
Q 040261 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPD---VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV----------- 229 (343)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 229 (343)
..|..+.+.|-..|+.+.|..+|++..+...+-- ..+|......-.++.+++.|+++++......-
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4577888889999999999999999887543322 35566666777788889999998887653211
Q ss_pred CC------CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 040261 230 QP------NVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263 (343)
Q Consensus 230 ~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 263 (343)
++ +...|...+..-...|-++....+++++++..
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 11 23455556666667788888888888887654
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.23 E-value=1.4e-09 Score=85.33 Aligned_cols=251 Identities=13% Similarity=0.049 Sum_probs=166.8
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 040261 60 NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139 (343)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (343)
+-+.-.|++..++.-.+ ......+.+......+.+++...|+++.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455688888876555 222222233445556778888889877654 3333333 566666666665554445555
Q ss_pred HHHHHHHHHHccCCCCCcccc-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHH
Q 040261 140 VALNLFEEMANGNGEFGVVCK-PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218 (343)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 218 (343)
.+..-++...... .. .+.........++...|++++|++++... .+.......+.++.+.++++.|.
T Consensus 84 ~~l~~l~~~~~~~------~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~ 151 (290)
T PF04733_consen 84 SALEELKELLADQ------AGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAE 151 (290)
T ss_dssp CHHHHHHHCCCTS---------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHhc------cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHH
Confidence 5555555443332 12 22233333445677889999999888653 35677788899999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 040261 219 CLFIEMMDQGVQPNVVTFNVIMNELCK----NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294 (343)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (343)
+.++.|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+.
T Consensus 152 k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 152 KELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999998753 33 444445555443 34699999999998765 4678899999999999999999999999998
Q ss_pred HhCCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 040261 295 ESNGCMRDVFSYGILINGYCKNKEI-EGALSLYSEMLSK 332 (343)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 332 (343)
...+ +.++.+...++.+....|+. +.+.+.+.++...
T Consensus 228 l~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 228 LEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 7764 44677777888888888887 6677888887754
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=3.8e-07 Score=77.50 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHH--HHHHHHhCCCCccHHHHHHHHH
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE--LFVSMESNGCMRDVFSYGILIN 311 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~ 311 (343)
..|......+...|..++|...|......+ +-++....++...+.+.|+..-|.. ++..+.+.+ +.+...|..+..
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~ 762 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGE 762 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 344444455566677788888887777664 4456788899999999998887777 999998875 558899999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 040261 312 GYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
.+.+.|+.++|.+.|.......
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhc
Confidence 9999999999999999887653
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=9.9e-09 Score=84.01 Aligned_cols=225 Identities=17% Similarity=0.039 Sum_probs=131.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcH
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (343)
..-+.+.|++.+|.-+|+..+... |-+...|..|.......++-..|+..+.+.++..+. |......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 344556777777777777776654 445667777777777777777777777777765422 566666677777777777
Q ss_pred HHHHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh
Q 040261 104 MEAAALFTKLRAFGCKP--------DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175 (343)
Q Consensus 104 ~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (343)
.+|++.++..+...++- +...-.. ..+.....+....++|-.+....+ ..+|+.+...|.-.|.-
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhhhHHHHhc
Confidence 77777777665442110 0000000 011111222333344444433321 23566666666666666
Q ss_pred cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChhHHHH
Q 040261 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN-VVTFNVIMNELCKNGKMDEASR 254 (343)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 254 (343)
.|++++|.+.|+.+.... |-|...||.|...++...+.++|+..|.+.++. .|+ .++...|.-.|...|.+++|..
T Consensus 443 s~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred chHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 777777777776666543 235666677776666666677777777766664 444 3344446666666777777666
Q ss_pred HHHHHH
Q 040261 255 LLELMI 260 (343)
Q Consensus 255 ~~~~~~ 260 (343)
.|-.++
T Consensus 520 hlL~AL 525 (579)
T KOG1125|consen 520 HLLEAL 525 (579)
T ss_pred HHHHHH
Confidence 665544
No 84
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.16 E-value=7.4e-08 Score=86.73 Aligned_cols=234 Identities=11% Similarity=0.072 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc-CCC---ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHH
Q 040261 50 PDLYTYNILINCFCKMGRVSPGFVVLGRILRS-CFT---PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125 (343)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (343)
.+...|...|....+.++.+.|.++.++++.. ++. --...|.++++.-...|.-+...++|++..+. .-....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 34456777777777777788888777777653 111 12345666666666667777777777777765 2123456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-ChhhHHHH
Q 040261 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP-DVVTYTSL 204 (343)
Q Consensus 126 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 204 (343)
..|...|.+.+..++|.++++.|.+.- ......|...+..+.+.++-++|..++.+..+.-.+- -.....-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 677777888888888888888887763 3456777777777777777778887777766542110 12334445
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCC
Q 040261 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA--SVYNTLMDGFCLTG 282 (343)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~ 282 (343)
+..-.+.|+.+.+..+|+..+... +-....|+..+..-.++|+.+.+..+|++++..++.|-. ..|.-.+..=.+.|
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 555567788888888887777652 334567777788777888888888888888777665542 34555554444556
Q ss_pred chHHHHHHHHH
Q 040261 283 RVNRAKELFVS 293 (343)
Q Consensus 283 ~~~~a~~~~~~ 293 (343)
+-..++.+=.+
T Consensus 1686 de~~vE~VKar 1696 (1710)
T KOG1070|consen 1686 DEKNVEYVKAR 1696 (1710)
T ss_pred chhhHHHHHHH
Confidence 55544444333
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=1.1e-06 Score=73.37 Aligned_cols=169 Identities=13% Similarity=0.091 Sum_probs=91.9
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.+...|..+.-.+....++++|+..|......+ +.|...+.-+.-.-++.++++........+.+.. +..-..|..+.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~A 150 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFA 150 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHH
Confidence 355667777777766777777777777766654 4455566665555566666666666655555542 12344566666
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLI------NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (343)
.++.-.|+...|..++++..+.. ..|+...+.... ......|..++|++.+......- ......-.
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-------~Dkla~~e 223 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-------VDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-------HHHHHHhh
Confidence 67777788888888887776653 234544443222 12233444444444443332211 11111122
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhC
Q 040261 168 TITDGLCKEGFVDKAKELFLKMKDE 192 (343)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (343)
.-...+.+.+++++|..++..+...
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 2334455555555555555555554
No 86
>PLN02789 farnesyltranstransferase
Probab=99.13 E-value=5.4e-07 Score=71.82 Aligned_cols=216 Identities=9% Similarity=0.056 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG-RVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (343)
.++..+-..+...++.++|+.+.+++++.. +-+..+|+....++...| ++++++..++++.+.+.+ +..+|+.....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 455566677777889999999999999855 334456777766777777 579999999999987644 66677766655
Q ss_pred HhhcCcH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 97 LCAESRI--MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 97 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
+.+.|+. ++++.+++++.+...+ +..+|....-++...|+++++++.++++.+.+ +.+..+|+....++.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------VRNNSAWNQRYFVIT 187 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-------CCchhHHHHHHHHHH
Confidence 5566653 6788999999988655 78899999999999999999999999999986 456677777666655
Q ss_pred hc---CCh----HHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc----CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 175 KE---GFV----DKAKELFLKMKDENINPDVVTYTSLIRGFCYA----NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243 (343)
Q Consensus 175 ~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (343)
+. |.. ++.+....++.... +-+...|+.+...+... +...+|...+.+..+.+ +.+......|+..|
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~ 265 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLL 265 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHH
Confidence 44 222 35555555555543 33566676666666552 23445666666655532 33455566666666
Q ss_pred Hh
Q 040261 244 CK 245 (343)
Q Consensus 244 ~~ 245 (343)
+.
T Consensus 266 ~~ 267 (320)
T PLN02789 266 CE 267 (320)
T ss_pred Hh
Confidence 53
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=3.7e-08 Score=80.75 Aligned_cols=258 Identities=12% Similarity=0.097 Sum_probs=187.9
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 040261 61 CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140 (343)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (343)
-+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+.+..+..+. +..+.-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 356789999999999999988644 7889999999999999999999999999988544 67788888889999999999
Q ss_pred HHHHHHHHHccCCCCCccccC--CcchHHHHHHHHHhcCChHHHHHHHHHh-hhCCCCCChhhHHHHHHHHhccCcHHHH
Q 040261 141 ALNLFEEMANGNGEFGVVCKP--DAITYSTITDGLCKEGFVDKAKELFLKM-KDENINPDVVTYTSLIRGFCYANDWNEA 217 (343)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a 217 (343)
|++.++..............+ +...-.. .............++|-.+ ...+..+|+.....|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999999887654221110000 0000000 1111222233444555444 4445457888899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 040261 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD-ASVYNTLMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
.+.|+.++... +-|...||.|...++...+.++|+..|.++.+. +|+ +.+.-.|.-+|...|.+++|.+.|-....
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999863 445789999999999999999999999999986 454 34555566789999999999998876543
Q ss_pred C---------CCCccHHHHHHHHHHHHhcCChHHHHHH
Q 040261 297 N---------GCMRDVFSYGILINGYCKNKEIEGALSL 325 (343)
Q Consensus 297 ~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 325 (343)
. +..++...|..|=.++...++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2 1122345777777777777777755443
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.12 E-value=2.2e-07 Score=83.89 Aligned_cols=239 Identities=13% Similarity=0.079 Sum_probs=186.9
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 74 VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF-GCKP---DVFTYTTLINGLCRTGHTIVALNLFEEMA 149 (343)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (343)
-|+++.... +-+...|-..|....+.++.++|.++.++.... ++.- -...|.++++.-...|.-+...++|+++.
T Consensus 1446 Dferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 344444442 224667888999999999999999999998754 1111 13467888888888888899999999998
Q ss_pred ccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 040261 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV 229 (343)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 229 (343)
+.. ..-..|..|...|.+.+..++|.++++.|.+.- .-....|...+..+.++++-+.|..++.+.++.
T Consensus 1525 qyc--------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-- 1593 (1710)
T KOG1070|consen 1525 QYC--------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS-- 1593 (1710)
T ss_pred Hhc--------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--
Confidence 864 235688999999999999999999999998762 246788999999999999999999999999876
Q ss_pred CCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccH--H
Q 040261 230 QPN---VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV--F 304 (343)
Q Consensus 230 ~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 304 (343)
-|. .......++.-.+.|+.+++..+|+...... +.....|+.+++.=.++|+.+.++.+|+++...++.|-. .
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 333 3445556667778999999999999988764 556789999999999999999999999999998876643 3
Q ss_pred HHHHHHHHHHhcCChHHHHHH
Q 040261 305 SYGILINGYCKNKEIEGALSL 325 (343)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~ 325 (343)
.|...+..=...|+-+.+..+
T Consensus 1673 ffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1673 FFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHHHhcCchhhHHHH
Confidence 555556555566775554443
No 89
>PLN02789 farnesyltranstransferase
Probab=99.12 E-value=3.6e-07 Score=72.80 Aligned_cols=213 Identities=9% Similarity=0.017 Sum_probs=148.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 040261 56 NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES-RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134 (343)
Q Consensus 56 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (343)
..+-..+...++.++|+..++++++..+. +..+|+....++...| ++++++..++++.+.+.+ +..+|+.....+.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence 33344455567888899999998886433 4556766666666666 578999999999887655 55667766555666
Q ss_pred cCCh--HHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc-
Q 040261 135 TGHT--IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA- 211 (343)
Q Consensus 135 ~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 211 (343)
.|+. ++++.+++++.+.+ +.+..+|+....++.+.|+++++++.++++.+.+.. +...|+.....+.+.
T Consensus 119 l~~~~~~~el~~~~kal~~d-------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSP 190 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcc
Confidence 6653 67788888888775 567788888888888899999999999999887643 566666665554443
Q ss_pred --Cc----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 040261 212 --ND----WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN----GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280 (343)
Q Consensus 212 --~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (343)
|. .++.......++... +-+...|+.+...+... +...+|...+.+..+.+ +.+......|+..|+.
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 245666666666653 44577777777777663 34456777777766654 4466677777777765
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=6.1e-07 Score=69.62 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=62.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHH-HHHHHHHHhc
Q 040261 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVY-NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSY-GILINGYCKN 316 (343)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 316 (343)
+.++.+..|++.+|+++|-.+....++ |..+| ..|.++|.+.+.++.|..++-++.. +.+..+. ..+..-|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHH
Confidence 456666778888888888766544333 34444 4456688888888888777655543 2233333 3334567788
Q ss_pred CChHHHHHHHHHHHhCCCCCCccccC
Q 040261 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342 (343)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~p~~~t~~ 342 (343)
+++--|.+.|+.+... .|+...|.
T Consensus 475 ~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHHHHHHHhhhHHHcc--CCCccccC
Confidence 8888888888887744 56655553
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.5e-06 Score=71.07 Aligned_cols=124 Identities=19% Similarity=0.146 Sum_probs=88.3
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHH-------------------------HHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVT-------------------------FNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
++.+.++++.+...+.+.+.....|+... ...-...+.+.|++..|+..|.+++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 45556677777777777655433333211 11114456678899999999998888
Q ss_pred cCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.. +-|...|..-.-+|.+.|.+..|++-.+...+.. ++....|..-..++....+|+.|.+.|.+.++.
T Consensus 387 r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 387 RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 6678888888888999999998888888777763 334556666667777778888888888888755
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=8.4e-07 Score=74.09 Aligned_cols=264 Identities=14% Similarity=0.117 Sum_probs=156.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (343)
..|...+.+| ..+++...+.+.+.+.+. .+-...+.....-.+...|+.++|........+..+. +.+.|+.+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHH
Confidence 3444444444 556777777777666552 2223344444444556677778887777777665433 666777777777
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcC
Q 040261 98 CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177 (343)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (343)
-...++++|++.|......+.. |...+.-+.-.-++.|+++.......++.+.. +.....|..+..++.-.|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQRASWIGFAVAQHLLG 157 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHH
Confidence 6777788888888887776543 56666666656667777777777777766653 334556777777777778
Q ss_pred ChHHHHHHHHHhhhCC-CCCChhhHHHHH------HHHhccCcHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhCCCh
Q 040261 178 FVDKAKELFLKMKDEN-INPDVVTYTSLI------RGFCYANDWNEAKCLFIEMMDQGVQPNVVTF-NVIMNELCKNGKM 249 (343)
Q Consensus 178 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~ 249 (343)
++..|..+++...+.. -.|+...+.... ......|..++|.+.+..-... ..|...+ ..-...+.+.+++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhH
Confidence 8888888777765543 234554444332 2334556666666666554332 2222222 2344556677888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhcCCchHHHH-HHHHHHHh
Q 040261 250 DEASRLLELMIQIGVRPDASVYN-TLMDGFCLTGRVNRAK-ELFVSMES 296 (343)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~ 296 (343)
++|..++..++..+ ||..-|. .+..++.+-.+.-++. .+|....+
T Consensus 236 EeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 236 EEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 88888888777763 4444333 3333443232333333 55555544
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=2.1e-06 Score=80.01 Aligned_cols=315 Identities=12% Similarity=0.005 Sum_probs=199.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCC--C----CCCH--HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccH---
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIG--L----FPDL--YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA--- 87 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 87 (343)
........+...|+++++..+++.....- . .+.. .....+...+...|+++.|...++.........+.
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 34455666678899999999998765421 0 1111 12223334566889999999999988763212121
Q ss_pred -HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccc-c
Q 040261 88 -VTFTSLIKGLCAESRIMEAAALFTKLRAFGC-----KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC-K 160 (343)
Q Consensus 88 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~ 160 (343)
...+.+...+...|++++|...+++.....- .....+...+...+...|+++.|...+++........+... .
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 2345566667788999999999988764311 11123445667778899999999999888765421110000 1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhhhC--CCCC--ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC--CCCCHH
Q 040261 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDE--NINP--DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG--VQPNVV 234 (343)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 234 (343)
.....+..+...+...|++++|...+.+.... ...+ ....+..+...+...|++++|...+....... ......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 11223445566777889999999998886542 1111 23344556667788999999999998875531 111110
Q ss_pred --HH--HHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCchHHHHHHHHHHHhC----CCCc-c
Q 040261 235 --TF--NVIMNELCKNGKMDEASRLLELMIQIGVRPD---ASVYNTLMDGFCLTGRVNRAKELFVSMESN----GCMR-D 302 (343)
Q Consensus 235 --~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 302 (343)
.. ...+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++.... |..+ .
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 10 1122444568899999998877544221111 112345677788999999999999887653 3222 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
..+...+..++.+.|+.++|...+.+.....
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3456667788999999999999999988654
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.03 E-value=1.1e-07 Score=73.48 Aligned_cols=187 Identities=11% Similarity=-0.045 Sum_probs=116.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccH--HH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL---YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA--VT 89 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 89 (343)
.....+..++..+.+.|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+..+.... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 456778888888889999999999999887643 2222 46677788888899999999999998876432111 13
Q ss_pred HHHHHHHHhhc--------CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccC
Q 040261 90 FTSLIKGLCAE--------SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161 (343)
Q Consensus 90 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (343)
+..+..++.+. |++++|.+.++++.+..+. +...+..+..... .. ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~------------- 165 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRL------------- 165 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHH-------------
Confidence 44445555543 6788888888888876332 2222211111100 00 000
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENI--NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
......+...+.+.|++++|...++....... +.....+..+..++...|++++|..+++.+...
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00112445566777777777777777665421 223566677777777777777777777766554
No 95
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=9.8e-08 Score=80.53 Aligned_cols=216 Identities=16% Similarity=0.115 Sum_probs=169.0
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHH
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 169 (343)
-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+..+..++ +|++..|..+
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--------~~d~~lyc~L 463 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--------DPDPRLYCLL 463 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--------CCcchhHHHh
Confidence 3445667777888888988888765 4667888999999999999999888873 5888999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 040261 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249 (343)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (343)
........-+++|.++.+..... .-..+.....+.++++++.+.++.-.+.. +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88888777788888888775432 11122222345788999999998877763 44567787888888889999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040261 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329 (343)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 329 (343)
+.|.+.|....... +-+...|+.+-.+|.+.++-.+|...+.+..+-+ ..+...|...+....+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999998888764 4557789999999999999999999999888876 556677777777888889999999999888
Q ss_pred HhC
Q 040261 330 LSK 332 (343)
Q Consensus 330 ~~~ 332 (343)
...
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 654
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=8.8e-07 Score=67.14 Aligned_cols=262 Identities=13% Similarity=0.148 Sum_probs=166.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHH-HHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNI-LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (343)
.+......|..+|....++..|-..++++... .|...-|.. -.+++.+.+.+..|+.+...|... ++...-..-
T Consensus 42 ~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lq 116 (459)
T KOG4340|consen 42 RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQ 116 (459)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHH
Confidence 47888999999999999999999999998774 365555544 346777889999999998887642 222111111
Q ss_pred HH--HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHH
Q 040261 94 IK--GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITD 171 (343)
Q Consensus 94 ~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (343)
+. .....+++..+..++++....| +..+.+...-...+.|+++.|.+-|+...+-++ . .....|+..+
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG-----y-qpllAYniAL- 186 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSG-----Y-QPLLAYNLAL- 186 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcC-----C-CchhHHHHHH-
Confidence 22 2334577777777777766442 344445555556778888888888888877664 2 2344555444
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCC-------------Ch---------------hhHHHHHHHHhccCcHHHHHHHHHH
Q 040261 172 GLCKEGFVDKAKELFLKMKDENINP-------------DV---------------VTYTSLIRGFCYANDWNEAKCLFIE 223 (343)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (343)
+..+.++++.|++...++.++|++. |. ..+|.-...+.+.++++.|.+-+-.
T Consensus 187 aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 187 AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 3445678888888888877765431 11 1133333445667777777777766
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 040261 224 MMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293 (343)
Q Consensus 224 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (343)
|.-+ ....|+.|...+.-.- ..+++....+-+.-+.+.+ +....||..++-.|++..-++.|-+++.+
T Consensus 267 mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 267 MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6422 1234555554443221 2344555555555555554 44567888888888888888877777654
No 97
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.98 E-value=1e-06 Score=78.37 Aligned_cols=173 Identities=9% Similarity=0.082 Sum_probs=115.8
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHH
Q 040261 11 HPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL-YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89 (343)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (343)
.-.|.+...+..|+..+...+++++|.++.+...+.. |+. ..|..+...+.+.++.+.+..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--------------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--------------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh---------------
Confidence 3445778889999999999999999999998766643 443 3444444456666664443333
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHH
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 169 (343)
.++.......++.-+..++..+.+.+ -+..++..+..+|-+.|+.+++..+++++.+.+ +.++.+.|.+
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~ 156 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKL 156 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHH
Confidence 33444444455544445555555542 244577788888888888888888888888876 5677888888
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
...|... +.++|.+++.+.... +...+++..+..+|..+...
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 8888888 888888888776653 34445556666666665554
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.97 E-value=3.7e-07 Score=67.76 Aligned_cols=149 Identities=11% Similarity=0.149 Sum_probs=111.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 040261 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249 (343)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (343)
+..|...|+++......+.+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3567888888887555433222 10 01223566777877787777764 66788888899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCCc--hHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 040261 250 DEASRLLELMIQIGVRPDASVYNTLMDG-FCLTGR--VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326 (343)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 326 (343)
++|...+++..+.. +.+...+..+..+ +...|+ .++|.+++++..+.. +.+...+..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998875 5577788888776 466676 589999999988874 346778888888899999999999999
Q ss_pred HHHHhCC
Q 040261 327 SEMLSKG 333 (343)
Q Consensus 327 ~~~~~~~ 333 (343)
+++++..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9988663
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=7.4e-06 Score=63.53 Aligned_cols=310 Identities=12% Similarity=0.068 Sum_probs=214.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHH-HHHHHHHHhcCCcchHHHHHHHHHHcCCCccH------
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTY-NILINCFCKMGRVSPGFVVLGRILRSCFTPDA------ 87 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 87 (343)
.+-.++..-...|...|+..-|+.=+.+.++ .+||...- ..-...+.+.|.++.|..-|+..++.....+.
T Consensus 70 ~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqs 147 (504)
T KOG0624|consen 70 NNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQS 147 (504)
T ss_pred hhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 4555566667888899999999999988887 45775432 22345678999999999999999886432111
Q ss_pred ------H--HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccc
Q 040261 88 ------V--TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159 (343)
Q Consensus 88 ------~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (343)
. .....+..+.-.|+...|+.....+.+.. +.|...+..-..+|...|++..|+.-++...+..
T Consensus 148 kl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs------- 219 (504)
T KOG0624|consen 148 KLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS------- 219 (504)
T ss_pred HHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-------
Confidence 1 12234455667789999999999998863 3477778888899999999999998888887754
Q ss_pred cCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhh----HHHH---------HHHHhccCcHHHHHHHHHHHHH
Q 040261 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT----YTSL---------IRGFCYANDWNEAKCLFIEMMD 226 (343)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~ 226 (343)
..+...+-.+-..+...|+.+.++...++-.+.+ ||... |..+ +......++|.++..-.+...+
T Consensus 220 ~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 220 QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3456667777788888999999998888877653 55422 2211 1233456777788887777777
Q ss_pred cCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccH
Q 040261 227 QGVQPNV---VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303 (343)
Q Consensus 227 ~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 303 (343)
....... ..+..+-.++...+++.+|++...+..+.. +.|..++..-..+|.-...++.|..-|+...+.+.. +.
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s-n~ 375 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES-NT 375 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc-cH
Confidence 6322122 234455566777889999999999988864 445888888889999999999999999888776421 21
Q ss_pred HHHHHH-----------------HHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 040261 304 FSYGIL-----------------INGYCKNKEIEGALSLYSEMLSKGIRPTVV 339 (343)
Q Consensus 304 ~~~~~l-----------------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 339 (343)
..-..+ |-+-.++-.-.+..+.|++|-. .+.||..
T Consensus 376 ~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAq-kWHPDNF 427 (504)
T KOG0624|consen 376 RAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQ-KWHPDNF 427 (504)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHH-hcCCccc
Confidence 111111 1112233345667777888754 4677754
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.95 E-value=2.7e-07 Score=68.52 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=54.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040261 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247 (343)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (343)
..+....+.|++..|...+.+..... ++|...|+.+..+|.+.|++++|..-+.+..+.. .-+...++.+.-.+.-.|
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcC
Confidence 34444444455555555544444332 3344445555445555555555554444444431 122333444444444445
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 040261 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291 (343)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (343)
+++.|..++......+ +-|..+-..+.......|++++|..+.
T Consensus 183 d~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 183 DLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred CHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555544444432 223334444444444445555444443
No 101
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.95 E-value=1.1e-05 Score=67.76 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHh-CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (343)
.|-..+..+.++|+.......|++.+. ..+......|...+......+-++.+..++++.++- ++..-+-.+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 344444555556666666666665443 122222335555555555556666666666666543 222244455555
Q ss_pred hhcCcHHHHHHHHHHHH
Q 040261 98 CAESRIMEAAALFTKLR 114 (343)
Q Consensus 98 ~~~~~~~~a~~~~~~~~ 114 (343)
+..+++++|.+.+....
T Consensus 180 ~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVL 196 (835)
T ss_pred HhccchHHHHHHHHHhc
Confidence 56666666665555543
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.94 E-value=7.4e-07 Score=66.28 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=99.2
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHH
Q 040261 91 TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170 (343)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (343)
..+-..+...|+-+....+........ ..|.......+....+.|++..|...+.+..... ++|...|+.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------p~d~~~~~~lg 141 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------PTDWEAWNLLG 141 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------CCChhhhhHHH
Confidence 445555666666666666655544332 2244455556666777777777777777776654 56667777777
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChh
Q 040261 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250 (343)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 250 (343)
-+|.+.|+.+.|..-|.+..+.. +-++..++.+.-.+.-.|+++.|..++......+ .-+..+-..+..+....|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 77777777777777777666542 2245556666666666777777777777666653 334555556666666777777
Q ss_pred HHHHHHHHH
Q 040261 251 EASRLLELM 259 (343)
Q Consensus 251 ~a~~~~~~~ 259 (343)
.|..+...-
T Consensus 220 ~A~~i~~~e 228 (257)
T COG5010 220 EAEDIAVQE 228 (257)
T ss_pred HHHhhcccc
Confidence 776665443
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.93 E-value=6.9e-07 Score=68.99 Aligned_cols=60 Identities=13% Similarity=-0.029 Sum_probs=39.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHhCCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 273 TLMDGFCLTGRVNRAKELFVSMESNGC--MRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.+...+.+.|++++|...++.+.+... +.....+..+..++...|++++|...++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344556777777777777777765421 123456667777777777777777777776544
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=3e-06 Score=72.29 Aligned_cols=283 Identities=14% Similarity=0.070 Sum_probs=176.3
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
+.+++..+.++. |+.+...+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++..|+.+.+.....
T Consensus 465 qale~av~~d~~--dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 465 QALEEAVQFDPT--DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHhcCCC--CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 345555555554 445555566667777788888888888777654567778888887788888888888887776653
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc---------------------C-------CCCCHHHHHHHHHHHH
Q 040261 82 CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF---------------------G-------CKPDVFTYTTLINGLC 133 (343)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~ 133 (343)
- ..|-.....-+..-...++.++++.....+... | ..-...++..+.....
T Consensus 543 ~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 543 F-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred h-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 1 111111111111112234444444333332211 0 0000111111111111
Q ss_pred hcCChHHHHHHHHHHHccCCCCCccccCC------cchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHH
Q 040261 134 RTGHTIVALNLFEEMANGNGEFGVVCKPD------AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG 207 (343)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (343)
..+........+...... ..|+ ...|......+.+.+..++|...+.+..... +.....|......
T Consensus 622 ~~~~~~~se~~Lp~s~~~-------~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVL-------PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred hhhhhcccccccCccccc-------CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 000000000000000000 0111 1234555677888899999998888876653 3456777777788
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHH--HHHHHHHcCCCCCHHHHHHHHHHHhcCCchH
Q 040261 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR--LLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285 (343)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (343)
+...|.+++|...|......+ +-+.....++...+.+.|+..-|.. ++..+.+.+ +.+...|-.+...+.+.|+.+
T Consensus 694 ~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchH
Confidence 888999999999999888763 3346788899999999999888888 999999987 778999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 040261 286 RAKELFVSMESN 297 (343)
Q Consensus 286 ~a~~~~~~~~~~ 297 (343)
+|.+.|....+.
T Consensus 772 ~Aaecf~aa~qL 783 (799)
T KOG4162|consen 772 QAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhh
Confidence 999999987764
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=6.9e-06 Score=76.61 Aligned_cols=304 Identities=13% Similarity=-0.007 Sum_probs=180.7
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC------Ccc--HHHHHHHHHHHhh
Q 040261 28 AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF------TPD--AVTFTSLIKGLCA 99 (343)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~ 99 (343)
...|++..+...++.+.......+..........+...|+++++..++......-. .+. ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34455555555554432111111122223344455677889999888887754311 111 1122223345567
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh
Q 040261 100 ESRIMEAAALFTKLRAFGCKPDV----FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175 (343)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (343)
.|++++|...+++..+.-...+. .....+...+...|+++.|...+++........+. ......+...+...+..
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV-YHYALWSLLQQSEILFA 543 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHHH
Confidence 89999999999987763211121 23455666778899999999999887754321100 01112345566777889
Q ss_pred cCChHHHHHHHHHhhhC----CCC--C-ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHH
Q 040261 176 EGFVDKAKELFLKMKDE----NIN--P-DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG--VQP--NVVTFNVIMNELC 244 (343)
Q Consensus 176 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~ 244 (343)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876442 211 1 12334455566777899999999988876531 112 2334445666788
Q ss_pred hCCChhHHHHHHHHHHHcCC--CCCHH--H--HHHHHHHHhcCCchHHHHHHHHHHHhCCCCcc---HHHHHHHHHHHHh
Q 040261 245 KNGKMDEASRLLELMIQIGV--RPDAS--V--YNTLMDGFCLTGRVNRAKELFVSMESNGCMRD---VFSYGILINGYCK 315 (343)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~--~~~~~--~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 315 (343)
..|+++.|...++.+..... ..... . ....+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 89999999999988755311 11111 0 01122444568899999998877554221111 1123456777889
Q ss_pred cCChHHHHHHHHHHHhC
Q 040261 316 NKEIEGALSLYSEMLSK 332 (343)
Q Consensus 316 ~~~~~~a~~~~~~~~~~ 332 (343)
.|++++|...+++....
T Consensus 704 ~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 704 LGQFDEAEIILEELNEN 720 (903)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999888653
No 106
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=7.7e-06 Score=61.12 Aligned_cols=256 Identities=15% Similarity=0.095 Sum_probs=168.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (343)
.+.|+ ++-+.-.|++..++..-...... +.+...-..+.++|...|++.... ..+.... .|.......+...
T Consensus 10 d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~ 81 (299)
T KOG3081|consen 10 DELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEY 81 (299)
T ss_pred hhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHH
Confidence 44454 34445578888887776654432 234444455667777777765433 2333222 3344444444444
Q ss_pred HhhcCcHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh
Q 040261 97 LCAESRIMEA-AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175 (343)
Q Consensus 97 ~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (343)
....++.+.- .++.+.+.......+......-...|.+.+++++|++...... +..+...=..++.+
T Consensus 82 ~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------------~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 82 LELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------------NLEAAALNVQILLK 149 (299)
T ss_pred hhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------------hHHHHHHHHHHHHH
Confidence 4444444443 3455555555444343444445567899999999999887722 23344444566778
Q ss_pred cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhH
Q 040261 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY----ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251 (343)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 251 (343)
..+.+.|...+++|.+- .+..+.+.|..++.+ .+...+|.-+|++|.++ ..|+..+.+....++...|++++
T Consensus 150 ~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 88999999999999875 367778877777654 45689999999999886 58899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHhC
Q 040261 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGR-VNRAKELFVSMESN 297 (343)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~ 297 (343)
|..+++++.... ..++.+...++.+-...|. .+...+.+..++..
T Consensus 226 Ae~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 226 AESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999998876 4456666666655555554 45556666777654
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=2.1e-06 Score=75.51 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 040261 49 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128 (343)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (343)
+.+...+..|..+..+.|..++|..+++...+..+. +......+...+.+.+++++|+..+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 344556666666666666666666666666665321 3455555666666666666666666666665433 44555566
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040261 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192 (343)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (343)
..++.+.|++++|..+|+++...+ +.+..++..+..++.+.|+.++|...|++..+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666666532 334566666666666666666666666666554
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=1.2e-06 Score=65.08 Aligned_cols=120 Identities=10% Similarity=0.168 Sum_probs=78.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCC--hhHH
Q 040261 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL-CKNGK--MDEA 252 (343)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 252 (343)
.++.+++...++...+.+ +.+...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655543 3466677777777777777777777777777653 33455666666543 45555 4777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCC
Q 040261 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298 (343)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (343)
.+++++..+.+ +-+...+..+...+...|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777777765 4456666777777777777777777777776653
No 109
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.3e-05 Score=65.20 Aligned_cols=171 Identities=15% Similarity=0.111 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCc-cHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP-DAVTFTSLI 94 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 94 (343)
+..++..-+-++.+.+++++|+.+.+.-.. ...+..-+..-..+..+.+..++|+..++ |..+ +..+...-.
T Consensus 45 d~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~A 117 (652)
T KOG2376|consen 45 DEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRA 117 (652)
T ss_pred cHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHH
Confidence 444555555555555666655544332110 00011111112223345555566655555 1222 233555666
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCC---------------------------CHHHHHHH---HHHHHhcCChHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKP---------------------------DVFTYTTL---INGLCRTGHTIVALNL 144 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~l---~~~~~~~~~~~~a~~~ 144 (343)
..+.+.|++++|+.+|+.+.+.+.+- ...+|..+ ...+...|++.+|+++
T Consensus 118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~el 197 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIEL 197 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence 77888999999999999886543220 01122222 2345678999999999
Q ss_pred HHHHHccCCCCCcc--cc-CCc-----chHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040261 145 FEEMANGNGEFGVV--CK-PDA-----ITYSTITDGLCKEGFVDKAKELFLKMKDEN 193 (343)
Q Consensus 145 ~~~~~~~~~~~~~~--~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (343)
++.....+...-.. .. .+. .+-.-+...+...|+.++|..++....+.+
T Consensus 198 L~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 198 LEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 99882211100000 00 000 122345566778999999999998887664
No 110
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2e-05 Score=65.56 Aligned_cols=312 Identities=15% Similarity=0.128 Sum_probs=182.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (343)
..-+=+..+.+.|++++|....+++...+ +.+...+..-+-++.+.+++++|+.+.+.-... ..+...+-.-..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 34445667778899999999999998866 556778888888999999999998655432211 111111112234445
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC----------------c----c
Q 040261 99 AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFG----------------V----V 158 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~----~ 158 (343)
+.+..++|+..++-.... +..+...-.+.+.+.+++++|+.+|+.+.+++.+.. . .
T Consensus 91 rlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 779999999998833322 344666777889999999999999999976653210 0 0
Q ss_pred cc-CCcchHHHH---HHHHHhcCChHHHHHHHHHhhhC-------CCCC------Ch-hhHHHHHHHHhccCcHHHHHHH
Q 040261 159 CK-PDAITYSTI---TDGLCKEGFVDKAKELFLKMKDE-------NINP------DV-VTYTSLIRGFCYANDWNEAKCL 220 (343)
Q Consensus 159 ~~-~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~-------~~~~------~~-~~~~~l~~~~~~~~~~~~a~~~ 220 (343)
.+ ....+|..+ ...+...|++.+|+++++...+. +-.- .. ..--.+...+-..|+-++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 00 012234333 34456789999999999887221 1000 01 1122344556778999999999
Q ss_pred HHHHHHcCCCCCHHHH----HHHHHHHHhCCChh-------------HHHHHHHHH------------------------
Q 040261 221 FIEMMDQGVQPNVVTF----NVIMNELCKNGKMD-------------EASRLLELM------------------------ 259 (343)
Q Consensus 221 ~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~-------------~a~~~~~~~------------------------ 259 (343)
+...++.. .+|.... |.|+..-....-++ -+..+...+
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99998875 3443222 22221111000011 000000000
Q ss_pred -----HHc-CCCCCHHHHHHHHHHHhc-C-CchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHH----
Q 040261 260 -----IQI-GVRPDASVYNTLMDGFCL-T-GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS---- 327 (343)
Q Consensus 260 -----~~~-~~~~~~~~~~~l~~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---- 327 (343)
... +..|. ..+..++..+.+ . ....++..++....+.............+......|+++.|++++.
T Consensus 326 ~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 326 VRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 000 11222 233334333322 2 2366677777766665322234455666777889999999999999
Q ss_pred ----HHHhCCCCCCcc
Q 040261 328 ----EMLSKGIRPTVV 339 (343)
Q Consensus 328 ----~~~~~~~~p~~~ 339 (343)
.+.+.+..|-.+
T Consensus 405 ~~~ss~~~~~~~P~~V 420 (652)
T KOG2376|consen 405 SWKSSILEAKHLPGTV 420 (652)
T ss_pred hhhhhhhhhccChhHH
Confidence 666656555544
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=4e-07 Score=76.96 Aligned_cols=220 Identities=15% Similarity=0.081 Sum_probs=159.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
|--..-..+...+.+.|-...|+.+|+++. .|.-.+.+|...|+..+|..+..+-.+. +|++..|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 444445567778888888888888888753 4556777888888888888888777763 67888888888
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-------plq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-------PLQLGTWFGLGCAAL 530 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-------ccchhHHHhccHHHH
Confidence 8776666677777777664332 22223333344678888888888777654 445677777788888
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 040261 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (343)
+.++++.|.+.|....... +.+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+
T Consensus 531 qlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence 8888888888887776642 3356778888888888888888888888888776 4456666667777778888888888
Q ss_pred HHHHHHH
Q 040261 255 LLELMIQ 261 (343)
Q Consensus 255 ~~~~~~~ 261 (343)
.+.++..
T Consensus 609 A~~rll~ 615 (777)
T KOG1128|consen 609 AYHRLLD 615 (777)
T ss_pred HHHHHHH
Confidence 8877765
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.87 E-value=2.3e-07 Score=65.20 Aligned_cols=97 Identities=9% Similarity=-0.095 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (343)
.+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|++..... +.+...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 45566777788888888888888877755 4567777888888888888888888888888764 336777777888888
Q ss_pred hcCcHHHHHHHHHHHHhcC
Q 040261 99 AESRIMEAAALFTKLRAFG 117 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~ 117 (343)
..|++++|...|+...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877763
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.87 E-value=1.8e-06 Score=75.91 Aligned_cols=219 Identities=10% Similarity=0.085 Sum_probs=154.1
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcc
Q 040261 86 DAVTFTSLIKGLCAESRIMEAAA-LFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164 (343)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 164 (343)
++.....+=.+.+.-|..++|-+ ++.+.. .++....+.....+++.-+..+... .+.+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 87 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-------YPHTEL 87 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-------ccccHH
Confidence 33344444445556666666533 333322 2233333333334444444444443 355688
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040261 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244 (343)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (343)
.+..|..+..+.|.+++|..+++...+.. +-+......+...+.+.+++++|....++..... +-+......+..++.
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999999998864 2346677788889999999999999999999874 445667778888999
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 040261 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324 (343)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 324 (343)
+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.. .+....|+.++. +...-..
T Consensus 166 ~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~ 237 (694)
T PRK15179 166 EIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLA 237 (694)
T ss_pred HhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHH
Confidence 9999999999999999843 4557899999999999999999999999988753 344555555443 3344455
Q ss_pred HHHHHHhCC
Q 040261 325 LYSEMLSKG 333 (343)
Q Consensus 325 ~~~~~~~~~ 333 (343)
.++++...+
T Consensus 238 ~~~~~~~~~ 246 (694)
T PRK15179 238 ALRRLGVEG 246 (694)
T ss_pred HHHHcCccc
Confidence 666665443
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=6.1e-06 Score=61.19 Aligned_cols=187 Identities=13% Similarity=0.132 Sum_probs=92.6
Q ss_pred CcHHHHHHHHHHHHhc---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh
Q 040261 101 SRIMEAAALFTKLRAF---G-CKPDVF-TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175 (343)
Q Consensus 101 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (343)
.+.++.++++.++... | ..++.. .+..++-+....|+.+.|...++++...- |.+..+-..-.-.+-.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-------p~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-------PGSKRVGKLKAMLLEA 98 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHH
Confidence 3445555555554422 2 222322 23334444455556666666666655542 2222222222233344
Q ss_pred cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 040261 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255 (343)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (343)
.|++++|+++++.+.+.+ +.|..++-.-+...-..|..-+|++-+....+. +..|...|..+...|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 566666666666665554 334444444444444455555555555555554 345566666666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCC---chHHHHHHHHHHHhC
Q 040261 256 LELMIQIGVRPDASVYNTLMDGFCLTG---RVNRAKELFVSMESN 297 (343)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 297 (343)
+++++-.. |.++..+..+...+...| +...+.+.+.+..+.
T Consensus 177 lEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 177 LEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 66665543 334444444444433332 344555555555553
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=5.9e-09 Score=52.45 Aligned_cols=32 Identities=47% Similarity=1.019 Sum_probs=19.1
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040261 298 GCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329 (343)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 329 (343)
|+.||..+|++++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=9.5e-06 Score=60.64 Aligned_cols=250 Identities=12% Similarity=0.036 Sum_probs=162.3
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 040261 60 NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139 (343)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (343)
+-+.-.|++..++..-....... -+...-.-+.++|...|.+..... ++... -.|....+..+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhH
Confidence 34455677777766655544332 233333345567777776654433 22222 2445555555555444455544
Q ss_pred HHHHH-HHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHH
Q 040261 140 VALNL-FEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218 (343)
Q Consensus 140 ~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 218 (343)
.-+.- .+.+.... ...+......-...|.+.|++++|++...... +......=+..+.+..+.+-|.
T Consensus 90 ~~~~~l~E~~a~~~------~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 90 SILASLYELVADST------DGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred HHHHHHHHHHHhhc------cchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 43333 33333322 12222333444567899999999999987722 3444444456677888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 040261 219 CLFIEMMDQGVQPNVVTFNVIMNELCK----NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294 (343)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (343)
..++.|.+.. +..+.+.|..++.+ .+....|.-+|++|.+. .+|+..+.+....++...|++++|..+++..
T Consensus 158 ~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 158 KELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 9999998753 67778878777764 35688999999999875 4889999999999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 040261 295 ESNGCMRDVFSYGILINGYCKNKEI-EGALSLYSEMLSK 332 (343)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 332 (343)
.... ..++.+...++.+-...|.. +-..+.+.++...
T Consensus 234 L~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 234 LDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred Hhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 8874 34666666666665555654 4445666666543
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=8.8e-07 Score=62.24 Aligned_cols=95 Identities=8% Similarity=-0.061 Sum_probs=70.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (343)
+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+++.+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666777788888888888777663 4456777777777888888888888888887765 5567777777777788
Q ss_pred CCchHHHHHHHHHHHhC
Q 040261 281 TGRVNRAKELFVSMESN 297 (343)
Q Consensus 281 ~~~~~~a~~~~~~~~~~ 297 (343)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888877765
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=1.1e-08 Score=51.52 Aligned_cols=31 Identities=42% Similarity=0.802 Sum_probs=13.2
Q ss_pred CCccHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 040261 83 FTPDAVTFTSLIKGLCAESRIMEAAALFTKL 113 (343)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 113 (343)
+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444433
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=5.6e-05 Score=62.37 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040261 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP-NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276 (343)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 276 (343)
..+|...+..-.+....+.|..+|.++.+.+..+ +..+.++++..++ .+|.+-|.++|+.-.+.- .-++.--...+.
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHH
Confidence 4567777777778888899999999999887776 5677777777765 678888999998766541 233444566777
Q ss_pred HHhcCCchHHHHHHHHHHHhCCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 277 GFCLTGRVNRAKELFVSMESNGCMRD--VFSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
.+...++-..+..+|++....++.++ ...|..++.-=..-|+...+.++-+++..
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 78888898999999999988755554 47899999888888999988888777654
No 120
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.8e-05 Score=63.92 Aligned_cols=215 Identities=13% Similarity=0.059 Sum_probs=133.3
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
++..+..++..|++-+....+.. -+..-++....+|...|.+..+...-+...+.++........=...+..+..+|.
T Consensus 232 naaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 33333444444555554444442 2333344445555556655555555544444432110000000111222334677
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhhH-------------------------HHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 040261 175 KEGFVDKAKELFLKMKDENINPDVVTY-------------------------TSLIRGFCYANDWNEAKCLFIEMMDQGV 229 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 229 (343)
+.++++.++..|.+.......|+...= ..-...+.+.|++..|...+.++++..
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~- 388 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD- 388 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-
Confidence 788899999999887665444433221 111345678899999999999999985
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHH
Q 040261 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309 (343)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 309 (343)
+-|...|..-.-+|.+.|.+..|+.-.+..++.+ ++....|..=..++....++++|.+.|.+..+.. |+..-+..-
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~ 465 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDG 465 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHH
Confidence 6678899999999999999999999988888875 4555666666666777789999999999998864 554444433
Q ss_pred HHHHHh
Q 040261 310 INGYCK 315 (343)
Q Consensus 310 ~~~~~~ 315 (343)
+.-|..
T Consensus 466 ~~rc~~ 471 (539)
T KOG0548|consen 466 YRRCVE 471 (539)
T ss_pred HHHHHH
Confidence 333333
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=6.5e-06 Score=73.50 Aligned_cols=232 Identities=9% Similarity=0.046 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040261 51 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD-AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129 (343)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (343)
+...+..|+..+...+++++|.++.+...+.. |+ ...|..+...+.+.++..++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 45678888888888899999999988777653 33 33333333455566664444333 333
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 040261 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209 (343)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (343)
.......++..+..+...+... ..+..++..+..+|-+.|+.++|..+++++.+.. +-++...|.+...|.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~a 161 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYE 161 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 3444444554444444455543 2345688889999999999999999999999987 558899999999999
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCc
Q 040261 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC-----KNGKMDEASRLLELMIQI-GVRPDASVYNTLMDGFCLTGR 283 (343)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 283 (343)
.. +.++|..++.+....-+ +..-|+.+...+. ...+.+.-..+.+.+... +..--..++-.+...|...++
T Consensus 162 e~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred Hh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh
Confidence 99 99999999988876511 1111222222111 122333344444444333 323334556666677888899
Q ss_pred hHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 040261 284 VNRAKELFVSMESNGCMRDVFSYGILINGYC 314 (343)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (343)
++++..+++.+.+.. +.|.....-++.+|.
T Consensus 239 ~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 239 WDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 999999999999874 346667777777776
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=7.7e-07 Score=62.16 Aligned_cols=109 Identities=14% Similarity=0.066 Sum_probs=76.5
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 040261 4 FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF 83 (343)
Q Consensus 4 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (343)
|+......|. +......+...+.+.|++++|.+.|+.+...+ +.+...+..+..++...|++++|..+++...+.+
T Consensus 6 ~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 6 LKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred HHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 4444444443 55666677777777888888888887776654 4466677777777777788888888887776654
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 040261 84 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
+.+...+..+...+...|++++|.+.++...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 335666666777777778888888888777765
No 123
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.2e-05 Score=61.25 Aligned_cols=185 Identities=10% Similarity=0.103 Sum_probs=117.4
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcH
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (343)
+.-+....++..|+.+++--...+-.....+-.-+..++.+.|++++|...+.-+.... .++...+..+.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45566778888999888766543322111233334566778899999999998887753 56677777777777777888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHH
Q 040261 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183 (343)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 183 (343)
.+|..+..+..+ ++.....++....+.++-++-..+.+.+... ..--.++.+.....-.+++|+
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----------~EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----------LEDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----------HHHHHhHHHHHHHHHHHHHHH
Confidence 888877655432 4444555666667777776666665555432 223344455555555677888
Q ss_pred HHHHHhhhCCCCCChhhHHHH-HHHHhccCcHHHHHHHHHHHHHc
Q 040261 184 ELFLKMKDENINPDVVTYTSL-IRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
++++.....+ |+-...|.- .-+|.+..-++-+.++++-..+.
T Consensus 172 dvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 172 DVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 8888877653 444444433 33556666677777777766665
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=3.8e-05 Score=57.12 Aligned_cols=188 Identities=13% Similarity=0.088 Sum_probs=115.1
Q ss_pred cCChhHHHHHHHHhHh---CC-CCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHH
Q 040261 30 NKHYDTVLSLFKRLNS---IG-LFPDLY-TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104 (343)
Q Consensus 30 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (343)
..+.++.++++..+.. .| ..++.. .|..++-+....|+.+.|...++.+..+- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3456777777777653 23 334544 35556666677778888888887776653 212222111112233357778
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHH
Q 040261 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184 (343)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 184 (343)
+|+++|+.+.+.++ .|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-
T Consensus 104 ~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-------F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 104 EAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-------FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 88888888877752 25556666666666677777777777777665 46677788888888888888888888
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHhc---cCcHHHHHHHHHHHHHc
Q 040261 185 LFLKMKDENINPDVVTYTSLIRGFCY---ANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 227 (343)
.++++.-.. |.++..+..+...+.. ..+.+.+.+++.+.++.
T Consensus 176 ClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 176 CLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 887776643 2234444444444333 23455666777666654
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=3.1e-06 Score=59.06 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=91.4
Q ss_pred HHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC
Q 040261 39 LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC 118 (343)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 118 (343)
.+++..+.. +.+......+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...+++..+.+.
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455555533 2344567778888899999999999999998865 34778888899999999999999999999888753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
. +...+..+..++...|+++.|...++...+..
T Consensus 83 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 D-DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 67778888899999999999999999998864
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=6.4e-05 Score=61.29 Aligned_cols=209 Identities=12% Similarity=0.024 Sum_probs=137.7
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (343)
+..=.-..++.++...-+.+...+ -.|+...+...+........-..+..++.+..+. .-...-|. ..-.+...|
T Consensus 244 ~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG-~A~~~~~~~ 320 (484)
T COG4783 244 LTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYG-RALQTYLAG 320 (484)
T ss_pred hcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHH-HHHHHHHhc
Confidence 333344456666666666665432 2355556666666554444434444443333221 11222333 334445678
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHH
Q 040261 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181 (343)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (343)
++++|+..++.+...-+ -|...+......+...++.++|.+.++.+.... +........+..++.+.|++.+
T Consensus 321 ~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-------P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 321 QYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD-------PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred ccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCccHHHHHHHHHHHhcCChHH
Confidence 88999999988887633 255666677788888999999999999888864 2335667777888889999999
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
|+.+++...... +-|+..|..|.++|...|+..++..-..+.. ...|++++|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~------------------~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY------------------ALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH------------------HhCCCHHHHHHHHHHHHH
Confidence 999888877664 5578889999999988888888776665543 235777777777777666
Q ss_pred c
Q 040261 262 I 262 (343)
Q Consensus 262 ~ 262 (343)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 5
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=0.00011 Score=59.92 Aligned_cols=239 Identities=14% Similarity=0.076 Sum_probs=155.7
Q ss_pred HHHHHhcCC-hhHHHHHHHHhH---hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC--CCccHHHHHHHHHHH
Q 040261 24 FGCLAKNKH-YDTVLSLFKRLN---SIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC--FTPDAVTFTSLIKGL 97 (343)
Q Consensus 24 ~~~~~~~~~-~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~ 97 (343)
+..+.+.|. .....+.|+++. ..+-.|+....+.=+ -..++..+...-+.+...+ -.|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPl----p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPL----PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCC----chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 445556663 455667777776 333344433211100 1112222333333333211 234555566666655
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcC
Q 040261 98 CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177 (343)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (343)
.....-..+..++.+..+. . .....-.....+...|+++.|++.++.+.... |.|+.........+.+.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~--~-~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-------P~N~~~~~~~~~i~~~~n 354 (484)
T COG4783 285 YEALPNQQAADLLAKRSKR--G-GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-------PDNPYYLELAGDILLEAN 354 (484)
T ss_pred hccccccchHHHHHHHhCc--c-chHHHHHHHHHHHHhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcC
Confidence 4443333343333333321 1 22233334445677899999999999998874 456666677778999999
Q ss_pred ChHHHHHHHHHhhhCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 040261 178 FVDKAKELFLKMKDENINPD-VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256 (343)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (343)
+.++|.+.++++.... |+ ....-.+..++.+.|++.+|..+++...... +-+...|..|.++|...|+..++....
T Consensus 355 k~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 355 KAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred ChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 9999999999998864 44 5666778899999999999999999998874 678899999999999999999999888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
.+..... |+++.|...+....+.
T Consensus 432 AE~~~~~------------------G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 432 AEGYALA------------------GRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhC------------------CCHHHHHHHHHHHHHh
Confidence 7765542 5666666666666554
No 128
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.0001 Score=65.48 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHH
Q 040261 88 VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167 (343)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (343)
..|..+..+-.+.|...+|++-|-+. -|+..|..+++...+.|.+++-.+++....+.. ..+..-+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~--------~E~~id~ 1170 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV--------REPYIDS 1170 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh--------cCccchH
Confidence 34445555555555555554443221 134445555555555555555555554444432 1222334
Q ss_pred HHHHHHHhcCChHHHHH
Q 040261 168 TITDGLCKEGFVDKAKE 184 (343)
Q Consensus 168 ~l~~~~~~~~~~~~a~~ 184 (343)
.++.+|++.++..+..+
T Consensus 1171 eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred HHHHHHHHhchHHHHHH
Confidence 44555555555444433
No 129
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.57 E-value=1.6e-05 Score=68.04 Aligned_cols=108 Identities=16% Similarity=0.203 Sum_probs=59.6
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch
Q 040261 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284 (343)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 284 (343)
+.+......|.+|+.+++.++.+. ....-|..+...|+..|+++.|.++|-+. ..++..|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344455566677777777666553 22334556666777777777777766543 1344456667777777
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 040261 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325 (343)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 325 (343)
..|.++-.+... .......|..-..-.-++|++.+|.++
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 777666555432 122334444444444444544444443
No 130
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.56 E-value=9.9e-06 Score=57.16 Aligned_cols=126 Identities=14% Similarity=0.161 Sum_probs=84.1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHH
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN---VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD--ASVYNTL 274 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 274 (343)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344455444 4677777877788777763 222 12233345667788888888888888887652222 2244456
Q ss_pred HHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040261 275 MDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329 (343)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 329 (343)
...+...|++++|...++..... ......+....+.|.+.|++++|...|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788888888888888764433 344556677778888888888888888764
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.56 E-value=6.2e-06 Score=67.30 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=68.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 040261 203 SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282 (343)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (343)
.++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++++.++.. +-+...+......+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444445556666666666665542 33 22335555555555666666666655442 334555555555566666
Q ss_pred chHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 283 RVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
+.+.|..+.+++.... +.+..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666542 2234466666666666666666666665553
No 132
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=0.0001 Score=64.10 Aligned_cols=286 Identities=16% Similarity=0.108 Sum_probs=141.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-C--------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCcc
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSI-G--------LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD 86 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 86 (343)
+..+|..+...|.+..+.+-|.-.+-.|... | -.|+ ..-..........|-+++|+.+|.+-.+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 4456777777777776666665555444321 1 0111 12122222334567777777777766542
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-----------
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF----------- 155 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------- 155 (343)
..|=..|...|.+++|.++-+.--+..+ ..||.....-+-..++.+.|++.|++......+.
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 2233445566788888777655332222 2355555566666777887777776542211000
Q ss_pred --CccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCH
Q 040261 156 --GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233 (343)
Q Consensus 156 --~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 233 (343)
......+...|.......-..|+.+.|+.++..... |-.+++..+-.|+.++|-++-++- -|.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccH
Confidence 000122445566666666677888888888776543 222333333344444443333221 122
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHc----------CCC------------CCH-----------HHHHHHHHHHhc
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQI----------GVR------------PDA-----------SVYNTLMDGFCL 280 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~------------~~~-----------~~~~~l~~~~~~ 280 (343)
.....+.+.|...|++.+|..+|.++... +++ .|. .-+...+..|-+
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHh
Confidence 33333444444444444444444333210 000 000 011222334556
Q ss_pred CCchHHHHHHHHH--------HHhC--CCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040261 281 TGRVNRAKELFVS--------MESN--GCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329 (343)
Q Consensus 281 ~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 329 (343)
+|.+.+|+++--+ ++.. ....|+...+.-.+.+....++++|..++-..
T Consensus 1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6666666654311 1111 22346667777777777777888877665433
No 133
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.53 E-value=3.3e-05 Score=68.20 Aligned_cols=165 Identities=12% Similarity=0.020 Sum_probs=116.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC-CccHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF-TPDAVTFTSLI 94 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 94 (343)
-...|..|...|....+...|...|+...+.+ ..+..........|++..+++.|..+.-..-+... ..-...|..+.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 45678999999998889999999999988765 45667788888999999999999888433322211 11122334445
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCc-chHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA-ITYSTITDGL 173 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 173 (343)
-.|.+.++...|..-|+...+..+. |...|..++.+|.+.|.+..|.++|.+....+ |+. ..--......
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--------P~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--------PLSKYGRFKEAVME 640 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--------cHhHHHHHHHHHHH
Confidence 5567778888888888888776554 77788899999999999999999998887754 322 1111222334
Q ss_pred HhcCChHHHHHHHHHhh
Q 040261 174 CKEGFVDKAKELFLKMK 190 (343)
Q Consensus 174 ~~~~~~~~a~~~~~~~~ 190 (343)
+..|.+.+|...+..+.
T Consensus 641 cd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLII 657 (1238)
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 55677777777766543
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=5.4e-05 Score=65.74 Aligned_cols=230 Identities=16% Similarity=0.133 Sum_probs=154.1
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc-C--------CCccHHHHHHHHHH
Q 040261 26 CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS-C--------FTPDAVTFTSLIKG 96 (343)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~ 96 (343)
.|...|+.+.|.+-.+.++ +..+|..+.++|.+..+++-|.-.+..|... | ..++ ..=....-.
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4556788888877776554 3568999999999999999888877777532 1 1222 222223334
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhc
Q 040261 97 LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176 (343)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (343)
....|..++|+.+|.+-.+. ..|=+.|...|.+++|+++-+.-... . -..+|......+...
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--------H-Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--------H-LRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--------e-hhhhHHHHHHHHHhh
Confidence 45679999999999987753 34556788899999999876643221 1 134666666777778
Q ss_pred CChHHHHHHHHHhhh----------CC---------CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHH
Q 040261 177 GFVDKAKELFLKMKD----------EN---------INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237 (343)
Q Consensus 177 ~~~~~a~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (343)
++.+.|++.|++... .. -..|...|.-.....-..|+.+.|+.++..... |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 888888888876321 11 012344455555555666777777776665443 33
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 040261 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295 (343)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (343)
.+++..+-.|+.++|.++-++ .-|....-.|.+.|-..|++.+|..+|.+..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 456666677888888777654 2355666678889999999999998887654
No 135
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.0007 Score=60.53 Aligned_cols=278 Identities=15% Similarity=0.140 Sum_probs=146.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (343)
.+++.......++...+-..+.+++++++.-.+. ..+...-+.++-...+ -+..+..++.+++...+ .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------
Confidence 5677777788888888888888888888764221 1122223333333333 23344444444443322 111
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcC---------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 040261 93 LIKGLCAESRIMEAAALFTKLRAFG---------------------CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151 (343)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (343)
+...+...+-+++|..+|++..-.+ ---.+..|..+..+-.+.|...+|.+-|-+
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik---- 1129 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK---- 1129 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh----
Confidence 1222333344455555554421100 001344566666666666666666554432
Q ss_pred CCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC
Q 040261 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP 231 (343)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 231 (343)
..|+..|..++....+.|.+++-.+.+....+..-.|.. =+.++-+|++.++..+.++++ .-|
T Consensus 1130 --------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gp 1192 (1666)
T KOG0985|consen 1130 --------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGP 1192 (1666)
T ss_pred --------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCC
Confidence 124566777777777777777777777665555433332 345666777777666655544 134
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHH------------------
Q 040261 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS------------------ 293 (343)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------ 293 (343)
+......+..-|...+.++.|.-+|... ..|..|...+...|++..|.+.-++
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh
Confidence 5555555555555555555555544332 2333444444444444444333222
Q ss_pred ------HHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 294 ------MESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 294 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
|....+.....-..-++.-|-..|-+++.+.+++..+
T Consensus 1264 EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1264 EFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 2222222334445566777777777777777776554
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.50 E-value=3e-07 Score=47.03 Aligned_cols=34 Identities=50% Similarity=0.961 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 040261 305 SYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338 (343)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 338 (343)
+|+.++.+|++.|++++|.++|++|...|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 5778888888888888888888888888887763
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.48 E-value=1.1e-05 Score=65.83 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=104.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243 (343)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (343)
.....++..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++++..+.. +-+...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344566777788899999999999998874 44 45567888888889999999999998763 44666777777889
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 040261 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (343)
.+.++++.|..+.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999974 5556799999999999999999998887653
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=1.8e-05 Score=55.89 Aligned_cols=128 Identities=12% Similarity=0.028 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccH--HHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD---LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA--VTFT 91 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 91 (343)
...|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++. ....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34566677766 4889999999999988754 223 233444667788999999999999999987633332 2445
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040261 92 SLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148 (343)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 148 (343)
.+...+...|++++|+..++..... ......+.....++.+.|+.++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5778889999999999999775443 234556778889999999999999999864
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.45 E-value=4.8e-07 Score=45.89 Aligned_cols=33 Identities=30% Similarity=0.659 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 040261 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336 (343)
Q Consensus 304 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 336 (343)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777776
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.00091 Score=58.85 Aligned_cols=224 Identities=13% Similarity=0.128 Sum_probs=152.5
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH--HHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHH
Q 040261 27 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC--FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104 (343)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (343)
....+++..|+.-..++.+.. |+. .|...+.+ +.+.|+.++|..+++.....+.. |..+...+-.+|.+.++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 346788899999998877643 444 23333333 56889999999888887766544 7888888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC------
Q 040261 105 EAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF------ 178 (343)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 178 (343)
+|..+|++.... .|+......+..+|.+.+++.+-.+.--++-+. .+.+...+-++++.+...-.
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------~pk~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------FPKRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcccchHHHHHHHHHHhccCCcccc
Confidence 999999998876 567777788888999988887665555555443 34556666666666553211
Q ss_pred ----hHHHHHHHHHhhhCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhCCChhHH
Q 040261 179 ----VDKAKELFLKMKDENINP-DVVTYTSLIRGFCYANDWNEAKCLFI-EMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252 (343)
Q Consensus 179 ----~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 252 (343)
..-|.+.++.+.+.+.+. +..-...-...+...|.+++|.+++. ...+.-...+...-+.-+..+...+++.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 234556666665543111 11112222334456788999999984 344433333444555667778888999999
Q ss_pred HHHHHHHHHcC
Q 040261 253 SRLLELMIQIG 263 (343)
Q Consensus 253 ~~~~~~~~~~~ 263 (343)
.++-.++...|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 99998888876
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.00069 Score=59.56 Aligned_cols=223 Identities=17% Similarity=0.165 Sum_probs=151.6
Q ss_pred HhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHH--HhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 040261 63 CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG--LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140 (343)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (343)
...+++.+|.+-.+++.+. .|+.. |...+.+ ..+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4567889999999998876 34443 3344444 45789999999999988877666 88899999999999999999
Q ss_pred HHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc-------
Q 040261 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND------- 213 (343)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 213 (343)
|..+|++..... |+......+..+|.+.+++.+-.++--++-+. .+-+...+-.+++...+.-.
T Consensus 96 ~~~~Ye~~~~~~--------P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 96 AVHLYERANQKY--------PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHHhhC--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccccc
Confidence 999999999865 55777777778888888776544443333332 23345555555554433211
Q ss_pred ---HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCChhHHHHHH-HHHHHcCCCCCHHHHHHHHHHHhcCCchHHHH
Q 040261 214 ---WNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCKNGKMDEASRLL-ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288 (343)
Q Consensus 214 ---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (343)
..-|.+.++.+.+.+ -.-+..-.-.-...+...|++++|..++ ....+.-.+-+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 223555666666553 1112222222334456788899999998 44444433445555566777888889999999
Q ss_pred HHHHHHHhCC
Q 040261 289 ELFVSMESNG 298 (343)
Q Consensus 289 ~~~~~~~~~~ 298 (343)
++..++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 9999888876
No 142
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.44 E-value=9.4e-05 Score=63.60 Aligned_cols=109 Identities=20% Similarity=0.308 Sum_probs=70.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 040261 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208 (343)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (343)
+.+....+++.+|+.+++.+.... ....-|..+...|...|+++.|.++|-+.- .++-.+..|
T Consensus 739 ieaai~akew~kai~ildniqdqk--------~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my 801 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--------TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMY 801 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--------cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHH
Confidence 344455667777777777776643 334566777788888888888888875432 255567788
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 040261 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256 (343)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (343)
.+.|+|+.|.++-.+... .......|-.-..-.-+.|++.+|.+++
T Consensus 802 ~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred hccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 888888888887665532 2333444544444555566666665554
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.41 E-value=1.2e-05 Score=65.94 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=79.1
Q ss_pred CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 040261 194 INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ--GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY 271 (343)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 271 (343)
.+.+......++..+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445566666666666666677777776666654 12122334456777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc
Q 040261 272 NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316 (343)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (343)
+.|+..+.+.|++..|.++...|..++...++.++..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777766665555555555555555443
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.38 E-value=3.9e-05 Score=63.11 Aligned_cols=121 Identities=15% Similarity=0.093 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCh
Q 040261 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV 198 (343)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 198 (343)
+.+......+++.+....+.+.+..++.++...... ...-..+..++++.|.+.|..+.++.+++.=...|+-||.
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~----~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC----SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc----ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 334555555566666666666666666665554321 1122334456666666666666666666666666666666
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243 (343)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (343)
.+++.++..+.+.|++..|.++...|..++...+..++...+.+|
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 666666666666666666666666665554444444444333333
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.38 E-value=3.1e-05 Score=56.47 Aligned_cols=96 Identities=7% Similarity=0.027 Sum_probs=66.9
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 040261 6 YMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD--LYTYNILINCFCKMGRVSPGFVVLGRILRSCF 83 (343)
Q Consensus 6 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (343)
.+....+.+.....+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+.+..+...
T Consensus 24 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 24 KILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3333334444566778888888888999999999988876432222 35777788888888999999988888887542
Q ss_pred CccHHHHHHHHHHHhhcCc
Q 040261 84 TPDAVTFTSLIKGLCAESR 102 (343)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~ 102 (343)
. +...+..+...+...|+
T Consensus 104 ~-~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 104 K-QPSALNNIAVIYHKRGE 121 (172)
T ss_pred c-cHHHHHHHHHHHHHcCC
Confidence 2 45566666667766665
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.36 E-value=9.2e-07 Score=44.81 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFP 50 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 50 (343)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.36 E-value=8.2e-07 Score=45.36 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD 51 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 51 (343)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.33 E-value=1.1e-05 Score=51.91 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=50.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCC-CCCHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHcCCCccHHHHHH
Q 040261 22 ILFGCLAKNKHYDTVLSLFKRLNSIGL-FPDLYTYNILINCFCKMGR--------VSPGFVVLGRILRSCFTPDAVTFTS 92 (343)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (343)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- .-..+.+|+.|+..++.|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345566666888888888888888887 7788888888877665422 2234555555655556666666665
Q ss_pred HHHHHh
Q 040261 93 LIKGLC 98 (343)
Q Consensus 93 l~~~~~ 98 (343)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555543
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.29 E-value=2.7e-05 Score=50.33 Aligned_cols=94 Identities=23% Similarity=0.235 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 040261 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK 315 (343)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (343)
+..+...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.++...... +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3345555666677777777777666553 3334556666666666777777777777666543 2334566666667777
Q ss_pred cCChHHHHHHHHHHHh
Q 040261 316 NKEIEGALSLYSEMLS 331 (343)
Q Consensus 316 ~~~~~~a~~~~~~~~~ 331 (343)
.|+++.|...+.+...
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766654
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.28 E-value=2.7e-05 Score=50.30 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (343)
++..+...+...|++++|...++...+.. +.+...+..+..++...+++++|.+.++....... .+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHH
Confidence 35566667777788888888887776643 23345666667777777777777777777766542 24456666667777
Q ss_pred hcCcHHHHHHHHHHHHhc
Q 040261 99 AESRIMEAAALFTKLRAF 116 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~ 116 (343)
..|+++.|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 777777777777766543
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.28 E-value=6.2e-05 Score=51.10 Aligned_cols=101 Identities=9% Similarity=-0.058 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC--ccHHHHHHH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF--PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT--PDAVTFTSL 93 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 93 (343)
.++..++..+.+.|++++|...|+.+...... .....+..+..++.+.|+++.|...++.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 46777888888999999999999998764311 11346677888899999999999999998875322 124567777
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCC
Q 040261 94 IKGLCAESRIMEAAALFTKLRAFGC 118 (343)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~ 118 (343)
..++.+.|+.++|.+.++++.+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 7888888999999999999888743
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.26 E-value=6.5e-05 Score=59.32 Aligned_cols=130 Identities=12% Similarity=0.159 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc-cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY-ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243 (343)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (343)
+|..++....+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45666666666666677777776666432 2233444444443222 45555567777666665 344555566666666
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 244 CKNGKMDEASRLLELMIQIGVRPD---ASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
...++.+.|..+|++.+.. +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666677777777666654 2222 236666666666666666666666666653
No 153
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.24 E-value=0.0011 Score=59.13 Aligned_cols=182 Identities=13% Similarity=0.084 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHH
Q 040261 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182 (343)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 182 (343)
...++..|-+..+..+. -...|..|...|....+...|.+.|++..+.+ +.+..........|.+..+++.|
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhhhhHHHHHHHhhccccHHHH
Confidence 55566665555544222 23467777888877778888888888887765 45667777788888888888888
Q ss_pred HHHHHHhhhCC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 183 KELFLKMKDEN-INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 183 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
..+.-...+.. ...-..-|....-.|...++...+..-|+...+.. +.|...|..++.+|...|++..|.++|.++..
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 87743322211 00111223334445677778888888888877764 45677888888888888888888888888776
Q ss_pred cCCCCCHHHHHHHH--HHHhcCCchHHHHHHHHHHHh
Q 040261 262 IGVRPDASVYNTLM--DGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 262 ~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~ 296 (343)
. .|+. .|...- -.-+..|.+.+|+..+.....
T Consensus 625 L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 625 L--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred c--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5 3332 222222 233556778888777776553
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.22 E-value=7.4e-05 Score=50.71 Aligned_cols=94 Identities=11% Similarity=0.053 Sum_probs=40.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCC--ccHHHHHHHHHHHH
Q 040261 239 IMNELCKNGKMDEASRLLELMIQIGVR--PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM--RDVFSYGILINGYC 314 (343)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 314 (343)
++..+.+.|++++|...++.+.+.... .....+..+..++.+.|+++.|...++.+...... .....+..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 344444445555555555444443100 01223333444455555555555555544432100 01233444444445
Q ss_pred hcCChHHHHHHHHHHHhC
Q 040261 315 KNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~ 332 (343)
+.|++++|.+.++++...
T Consensus 88 ~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HhCChHHHHHHHHHHHHH
Confidence 555555555555555443
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=8.1e-06 Score=51.46 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 040261 246 NGKMDEASRLLELMIQIGVR-PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324 (343)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 324 (343)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+ +.+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777788888877776421 2344555577778888888888888877 2221 1233444455777788888888887
Q ss_pred HHHH
Q 040261 325 LYSE 328 (343)
Q Consensus 325 ~~~~ 328 (343)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.18 E-value=0.00072 Score=52.12 Aligned_cols=184 Identities=11% Similarity=0.097 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHH---HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHH
Q 040261 51 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT---FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127 (343)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (343)
+...+-.....+...|++++|.+.|+.+....+.. ... .-.++.++.+.+++++|...+++..+..+......+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 33333344455567889999999999988764332 222 23466778888999999999988887744333333333
Q ss_pred HHHHHHh--c---------------CC---hHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHH
Q 040261 128 LINGLCR--T---------------GH---TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187 (343)
Q Consensus 128 l~~~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (343)
.+.+.+. . .+ ...|+..|+.+.+.. |++ .-..+|...+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--------P~S-------------~ya~~A~~rl~ 168 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--------PNS-------------QYTTDATKRLV 168 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--------cCC-------------hhHHHHHHHHH
Confidence 3333321 1 11 235666677776654 222 12233333333
Q ss_pred HhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 040261 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ--GVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (343)
.+... . ...--.+...|.+.|.+..|..-++.+++. +.+........+..+|...|..++|..+...+.
T Consensus 169 ~l~~~---l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDR---L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHH---H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 33221 0 011113455677777777777777777765 222334555667777878888888777766553
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.16 E-value=0.0001 Score=60.46 Aligned_cols=95 Identities=8% Similarity=-0.015 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhc
Q 040261 21 NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100 (343)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (343)
......+...|++++|++.|+++++.. +.+...|..+..++...|++++|+..+++++.... .+...|..+..++...
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHh
Confidence 344667778999999999999999865 45677888899999999999999999999998753 3677888899999999
Q ss_pred CcHHHHHHHHHHHHhcC
Q 040261 101 SRIMEAAALFTKLRAFG 117 (343)
Q Consensus 101 ~~~~~a~~~~~~~~~~~ 117 (343)
|++++|...|++..+.+
T Consensus 84 g~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 84 EEYQTAKAALEKGASLA 100 (356)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999999874
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.16 E-value=6.4e-05 Score=52.30 Aligned_cols=98 Identities=6% Similarity=-0.128 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 040261 53 YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132 (343)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (343)
...-.+...+...|++++|..+|+.+....+. +...|..|..++-..|++++|+..|......++. ++..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34444555566777777777777777665422 5566666777777777777777777777776643 666677777777
Q ss_pred HhcCChHHHHHHHHHHHccC
Q 040261 133 CRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~~ 152 (343)
...|+.+.|.+.|+......
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 77777777777777776664
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=8.7e-06 Score=51.32 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=30.7
Q ss_pred CChhHHHHHHHHhHhCCCC-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHH
Q 040261 31 KHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109 (343)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 109 (343)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+. .+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4445555555554443210 1222333344444455555555544444 11111 1122222334444444555554444
Q ss_pred HH
Q 040261 110 FT 111 (343)
Q Consensus 110 ~~ 111 (343)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=2.4e-05 Score=59.74 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=81.4
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchH
Q 040261 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285 (343)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (343)
.-+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 34567889999999999998873 4467777778889999999999999998888865 445678999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHH
Q 040261 286 RAKELFVSMESNGCMRDVFSYGILIN 311 (343)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~l~~ 311 (343)
+|.+.|++..+. .|+-.+|-.=+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 999999988875 576666554443
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.11 E-value=0.00018 Score=58.93 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=41.7
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHH
Q 040261 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288 (343)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (343)
...|++++|+..++++++.. +-+...|..+..++...|++++|+..++++++.. +.+...|..+..+|...|++++|.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34445555555555554442 2233444444445555555555555555555443 233444444555555555555555
Q ss_pred HHHHHHHh
Q 040261 289 ELFVSMES 296 (343)
Q Consensus 289 ~~~~~~~~ 296 (343)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555544
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.11 E-value=0.0002 Score=49.91 Aligned_cols=97 Identities=10% Similarity=-0.078 Sum_probs=70.3
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278 (343)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (343)
...-.+..-+...|++++|..+|+.+...+ +-+..-|..|..++-..|++++|+..|..+...+ +-++..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344445555667788888888888877764 3345556667777777888888888888887776 45667777777788
Q ss_pred hcCCchHHHHHHHHHHHhC
Q 040261 279 CLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~ 297 (343)
...|+.+.|.+.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888776654
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.11 E-value=4.4e-06 Score=41.18 Aligned_cols=29 Identities=45% Similarity=0.888 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 305 SYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.10 E-value=0.0001 Score=47.66 Aligned_cols=71 Identities=14% Similarity=0.285 Sum_probs=35.5
Q ss_pred HhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCC--------chHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 040261 244 CKNGKMDEASRLLELMIQIGV-RPDASVYNTLMDGFCLTG--------RVNRAKELFVSMESNGCMRDVFSYGILINGYC 314 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (343)
...+++...-.+|+.+.+.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+|+.++..+.
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 333555555555555555554 445555555554444321 22334455555555555566666655555544
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.10 E-value=0.00045 Score=50.37 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=38.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN--VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (343)
+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44444444555555555555555544321111 2344455555555555555555555555542 22333444444444
Q ss_pred hcCCc
Q 040261 279 CLTGR 283 (343)
Q Consensus 279 ~~~~~ 283 (343)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.09 E-value=0.00049 Score=59.09 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=100.2
Q ss_pred CCCCChhhHHHHHHHHhcc-----CcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC--------ChhHHHHHHHH
Q 040261 193 NINPDVVTYTSLIRGFCYA-----NDWNEAKCLFIEMMDQGVQPN-VVTFNVIMNELCKNG--------KMDEASRLLEL 258 (343)
Q Consensus 193 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~a~~~~~~ 258 (343)
..+.+...|...+++.... ++...|..+|++..+. .|+ ...+..+..++.... +...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3456778888888775432 3477899999999987 455 455555544443221 12333444444
Q ss_pred HHHc-CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 040261 259 MIQI-GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337 (343)
Q Consensus 259 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 337 (343)
.... ..+.+...+..+.-.....|++++|...+++....+ |+...|..+...+...|++++|...+++.... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 3332 124456778777777777899999999999999975 68889999999999999999999999999855 455
Q ss_pred cccc
Q 040261 338 VVTY 341 (343)
Q Consensus 338 ~~t~ 341 (343)
..||
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 4443
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.06 E-value=0.00031 Score=55.52 Aligned_cols=130 Identities=13% Similarity=0.076 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHccCCCCCccccCCcchHH
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR-TGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (343)
+|..+++..-+.+..+.|..+|.+.++.+ ..+...|......-.+ .++.+.|.++|+...+. .+.+...|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-------f~~~~~~~~ 74 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-------FPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-------HTT-HHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------CCCCHHHHH
Confidence 34444455555555555555555554332 1123333333333222 33444455555555544 233444455
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCC---hhhHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 168 TITDGLCKEGFVDKAKELFLKMKDENINPD---VVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
..+..+.+.++.+.|..+|++.... ++++ ...|...+..-.+.|+.+.+..+.+++.+.
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555555554443 1111 124555555555555555555555555443
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.06 E-value=0.0013 Score=52.18 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=11.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHH
Q 040261 202 TSLIRGFCYANDWNEAKCLFIEMMD 226 (343)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (343)
..+...+.+.|++++|..+|+++..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3334444444455555555544443
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.05 E-value=0.00019 Score=52.11 Aligned_cols=94 Identities=16% Similarity=0.044 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040261 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP--NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275 (343)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 275 (343)
...+..+...+...|++++|...++........+ ...++..+...+...|++++|...+++..+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556666777777888888888888887653222 23467777888888888888888888887753 33345555555
Q ss_pred HHHh-------cCCchHHHHHHHH
Q 040261 276 DGFC-------LTGRVNRAKELFV 292 (343)
Q Consensus 276 ~~~~-------~~~~~~~a~~~~~ 292 (343)
..+. ..|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 6666665544444
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.05 E-value=0.0031 Score=48.70 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=40.5
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 92 SLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY---TTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
.....+.+.|++++|.+.|+.+....+.+ .... -.++.++.+.++++.|...+++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34444556788888888888887764332 2222 345667778888888888888887765
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0031 Score=50.80 Aligned_cols=266 Identities=14% Similarity=0.018 Sum_probs=140.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (343)
.......+.+..++.+|+..+...++.. +.+..-|..-+..+...|+++.|.--.+.-.+.... ......-.-+++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhh
Confidence 3334555666677788888888777755 233445555555566666666665444443332100 01111112222222
Q ss_pred cCcHHHHHHHH---------------HHHHhcCC-CCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHccCCCCCccccCC
Q 040261 100 ESRIMEAAALF---------------TKLRAFGC-KPDVFTYTTL-INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162 (343)
Q Consensus 100 ~~~~~~a~~~~---------------~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (343)
.++..+|.+.+ +.+..... +|....+..+ ..++.-.|++++|.+.--...+.+ ..+
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-------~~n 202 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-------ATN 202 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-------cch
Confidence 22222222222 22221111 1222333322 345566778888877776666654 122
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH-------------HHHHHhccCcHHHHHHHHHHHHHc--
Q 040261 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS-------------LIRGFCYANDWNEAKCLFIEMMDQ-- 227 (343)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~-- 227 (343)
....-.-..++.-.++.+.+...|.+....+ |+...-.. -..-..+.|.+..|.+.+.+.+..
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 2222222233445677788888887776643 33322111 122345678888888888887764
Q ss_pred -CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 228 -GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 228 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
+..|+...|.....+..+.|+.++|+.--++....+ +.-...+..-..++...++|++|++-++...+.
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 234556667667777778888888888777776543 111222333334555667788888888776654
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.02 E-value=0.00062 Score=54.04 Aligned_cols=198 Identities=12% Similarity=0.089 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHc----CCC-ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHh----cCCCCC--H
Q 040261 54 TYNILINCFCKMGRVSPGFVVLGRILRS----CFT-PDAVTFTSLIKGLCAESRIMEAAALFTKLRA----FGCKPD--V 122 (343)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~ 122 (343)
.|......|...|++++|.+.|.+.... +-. .-...|.....++.+ .++++|.+.+++..+ .| .++ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 3455555566666666666666655431 101 112233334444433 366777766666543 22 112 2
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-----C
Q 040261 123 FTYTTLINGLCRT-GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN-----P 196 (343)
Q Consensus 123 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~ 196 (343)
..+..+...|... |+++.|.+.|++........+. ...-..++..+...+.+.|++++|.++|+++...... .
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 3456667778777 8999999999887664311000 1112345677888999999999999999998664322 1
Q ss_pred Chh-hHHHHHHHHhccCcHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHhCCChhHHHHH
Q 040261 197 DVV-TYTSLIRGFCYANDWNEAKCLFIEMMDQG--VQPN--VVTFNVIMNELCKNGKMDEASRL 255 (343)
Q Consensus 197 ~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 255 (343)
+.. .+-..+-++...|++..|...+++..... +..+ ......|+.++ +.||.+.....
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~a 256 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEA 256 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence 121 22333446677788889988888887652 2222 23344455554 34454443333
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.01 E-value=0.00021 Score=51.88 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFP--DLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
...|..+...+...|++++|...|++.......+ ...++..+..++...|++++|...+++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344445555555555555555555554322111 1124444555555555555555555555443
No 174
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.01 E-value=0.0061 Score=50.95 Aligned_cols=176 Identities=11% Similarity=0.111 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-ChhhHHHHHHHHhccCcHHH
Q 040261 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP-DVVTYTSLIRGFCYANDWNE 216 (343)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 216 (343)
.+.....++++.... ...-..+|..++....+..-...|..+|.+..+.+..+ .+...++++..++ .++.+-
T Consensus 347 ~~~~~~~~~~ll~~~------~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~ 419 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIE------DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKET 419 (656)
T ss_pred hhhhHHHHHHHHhhh------ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhH
Confidence 555666666666554 22335678889999999999999999999999887666 6777788887766 578899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHH
Q 040261 217 AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD--ASVYNTLMDGFCLTGRVNRAKELFVSM 294 (343)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (343)
|.++|+--++. ..-+..--...+..+...++-..+..+|++....+.+++ ..+|..++..=..-|+...+.++-+++
T Consensus 420 AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 420 AFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999987765 233344445677888899999999999999999865554 578999999888999999999988876
Q ss_pred HhCC---CCccHHHHHHHHHHHHhcCChHH
Q 040261 295 ESNG---CMRDVFSYGILINGYCKNKEIEG 321 (343)
Q Consensus 295 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 321 (343)
...- ..+....-..+++-|.-.+.+..
T Consensus 499 ~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 499 FTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred HHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 5431 12222233445555655555443
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.00 E-value=0.00089 Score=44.95 Aligned_cols=111 Identities=17% Similarity=0.100 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC--ccHHHHHHHH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD--LYTYNILINCFCKMGRVSPGFVVLGRILRSCFT--PDAVTFTSLI 94 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 94 (343)
....+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....+. .+......+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 345567788889999999999999999886544 346677888899999999999999998875322 1222233344
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (343)
.++...|+.++|++.+-..... +...|..-|..|.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 5677889999999888766543 3445655555554
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.99 E-value=1.1e-05 Score=39.74 Aligned_cols=29 Identities=38% Similarity=0.698 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFG 117 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (343)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.98 E-value=0.00095 Score=57.38 Aligned_cols=135 Identities=12% Similarity=0.052 Sum_probs=96.6
Q ss_pred CCChhhHHHHHHHHHhcC-----ChhHHHHHHHHhHhCCCCCC-HHHHHHHHHHHHhcCC--------cchHHHHHHHHH
Q 040261 14 PPPVCSFNILFGCLAKNK-----HYDTVLSLFKRLNSIGLFPD-LYTYNILINCFCKMGR--------VSPGFVVLGRIL 79 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~ 79 (343)
|.+..+|...+.+..... +...|..+|++..+.. |+ ...|..+..++..... ...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 478889999988865433 3679999999999855 54 4455554444433221 223333333333
Q ss_pred Hc-CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 80 RS-CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 80 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
.. ....+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|...+++....+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 32 123355677777666667899999999999999985 688899999999999999999999999998865
No 178
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.96 E-value=0.00022 Score=52.22 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=66.3
Q ss_pred CChhhHHHHHHHHHhc-----CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHH
Q 040261 15 PPVCSFNILFGCLAKN-----KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (343)
.+-.+|..++..+.+. |..+-....+..|.+.|+.-|..+|+.|+..+-+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 4566677777776643 5566666667777777777777777777776654 3322 01111111
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (343)
..-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 12346688888999988988899998888888887665
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00035 Score=53.57 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=40.8
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHH
Q 040261 26 CLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME 105 (343)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (343)
-+.+.+++++|+..|.+.++.. +-|...|..-..+|.+.|.++.|++-.+..+..+. ....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHH
Confidence 3344445555555555554432 22334444444455555555555555444444321 123344445555555555555
Q ss_pred HHHHHHHHHh
Q 040261 106 AAALFTKLRA 115 (343)
Q Consensus 106 a~~~~~~~~~ 115 (343)
|++.|++.++
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 5555544444
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.94 E-value=0.0018 Score=43.51 Aligned_cols=90 Identities=20% Similarity=0.129 Sum_probs=49.1
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHh
Q 040261 205 IRGFCYANDWNEAKCLFIEMMDQGVQPN--VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRP---DASVYNTLMDGFC 279 (343)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 279 (343)
..++-..|+.++|+.++++..+.|.... ...+-.+...+...|++++|..+++...... +. +......+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 3445556666666666666666654433 2344445556666666666666666665541 11 1222222333555
Q ss_pred cCCchHHHHHHHHHHH
Q 040261 280 LTGRVNRAKELFVSME 295 (343)
Q Consensus 280 ~~~~~~~a~~~~~~~~ 295 (343)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666665444
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.94 E-value=0.0025 Score=47.80 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=40.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (343)
+...+-.....+.+.|++.+|...|+.+...-. +-.......++.++.+.|+++.|...+++.++.-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344455566666777778888888877765321 1122345556677777777777777777777653
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=0.0001 Score=43.71 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=39.0
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
+...+.+.|++++|...|+++.+.. +-+...+..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455667777777777777777664 335666777777777777777777777777644
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0021 Score=49.68 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=44.7
Q ss_pred ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---CChhHHHHHHHHHHHcCCCCCHHHHHH
Q 040261 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN---GKMDEASRLLELMIQIGVRPDASVYNT 273 (343)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (343)
|...|..|..+|...|+++.|..-|.+..+.. .++...+..+..++... .+..++..+|+++...+ +-|......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 44455555555555555555555555544431 23333333333333221 12334445555554443 333444444
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhC
Q 040261 274 LMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444455555555555555555443
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0008 Score=51.88 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhc---CcHHHHHHHHHHHHhcCCCCCHHHHHH
Q 040261 51 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE---SRIMEAAALFTKLRAFGCKPDVFTYTT 127 (343)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (343)
|...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++... ....++..+++++...... +..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44444444444444444444444444444432 22333333333332222 1223444444444444222 3333344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcc
Q 040261 128 LINGLCRTGHTIVALNLFEEMANG 151 (343)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~ 151 (343)
+...+...|++.+|...|+.|...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444445555555555444444
No 185
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.85 E-value=0.0011 Score=48.69 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=58.9
Q ss_pred CChhhHHHHHHHHhc-----cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------------ChhHHHH
Q 040261 196 PDVVTYTSLIRGFCY-----ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG----------------KMDEASR 254 (343)
Q Consensus 196 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~ 254 (343)
.+..+|..++..+.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 477888888887754 4667777777888888888888888888888875421 2334556
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 040261 255 LLELMIQIGVRPDASVYNTLMDGFCLTG 282 (343)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (343)
++++|...|+-||..++..+++.|.+.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 6666666666666666666666554444
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.84 E-value=9.9e-05 Score=44.29 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=29.8
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
+.|++++|..+|+.+.+.. +-+......+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666666666665553 335555555666666666666666666665554
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.83 E-value=6.9e-05 Score=44.98 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=28.7
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 29 KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
+.|++++|+++|+.+.... +.+...+..+..++.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666655433 234555555556666666666666666655554
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.82 E-value=9.9e-05 Score=44.43 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG-RVSPGFVVLGRILR 80 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 80 (343)
+.+|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555433 223444555555555555 45555555555444
No 189
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0048 Score=49.74 Aligned_cols=265 Identities=13% Similarity=0.034 Sum_probs=162.9
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 040261 58 LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137 (343)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (343)
....+.+..++..|+..+...++..+. +...|..-+..+...|++++++--.+.-.+.... ........-+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHH
Confidence 334556677788888888888887543 5666777777777788888887766555443211 11122223333333333
Q ss_pred hHHHHHHHH------------HHHccCCCCCccccCCcchHHHH-HHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHH
Q 040261 138 TIVALNLFE------------EMANGNGEFGVVCKPDAITYSTI-TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204 (343)
Q Consensus 138 ~~~a~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 204 (343)
..+|...++ .....-..+. -+|.-..+..+ ..++.-.|++++|...-..+.+.. ....+...
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s--~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~ 207 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHS--REPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALY 207 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhccccccc--CCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHH
Confidence 333333322 2211110000 11222233322 245667899999988877776653 22233333
Q ss_pred H--HHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHH-------------HHHHHHhCCChhHHHHHHHHHHHc---CCCC
Q 040261 205 I--RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV-------------IMNELCKNGKMDEASRLLELMIQI---GVRP 266 (343)
Q Consensus 205 ~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 266 (343)
+ .++.-.++.+.+...|++.+..+ |+...-.. =..-..+.|++..|...|.+.+.. +.++
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 3 34445678889999998887753 44322211 123345789999999999999875 3456
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD-VFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
+...|.....+..+.|+.++|+.-.+...+.. +. ...+..-..++...++|++|.+-+++..+..
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788888888899999999999999888742 22 2233334456777889999999999887654
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.79 E-value=0.006 Score=43.62 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CCh
Q 040261 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN-PDV 198 (343)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 198 (343)
|+...-..|..++.+.|+..+|...|++....- ..-|......+..+....+++..|...++++.+.+.. -++
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGI------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 444444455555555555555555555554433 3344445555555555555555555555555443200 012
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
.+.-.+.+.+...|.+.+|..-|+.....
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 22333445555555555555555555543
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.75 E-value=0.0096 Score=44.72 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=27.1
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhCCCCcc----HHHHHHHHHHHHhcCChHHH
Q 040261 274 LMDGFCLTGRVNRAKELFVSMESNGCMRD----VFSYGILINGYCKNKEIEGA 322 (343)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 322 (343)
+...|.+.|.+..|..-++.+.+.- |+ ......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 4556677777777777777766641 22 23445566667777766643
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=0.00019 Score=42.62 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=29.7
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
...+.+.|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555555555555543 224445555555555555555555555555543
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.70 E-value=0.0018 Score=45.73 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHh-----CCCCccHHH
Q 040261 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-----NGCMRDVFS 305 (343)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 305 (343)
....++..+...|++++|..+.+.+.... +.+...+..++.+|...|+...|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455666677778888888887777765 56677777788888888888888777776643 366666654
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.70 E-value=0.00043 Score=41.61 Aligned_cols=60 Identities=20% Similarity=0.167 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 040261 270 VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK-EIEGALSLYSEML 330 (343)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 330 (343)
.|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444432 223344444444444444 3444444444443
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.69 E-value=0.0088 Score=42.81 Aligned_cols=158 Identities=13% Similarity=0.032 Sum_probs=107.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 040261 58 LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137 (343)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (343)
+..+..+.-+++...+-..+-.. ..|+...-..+..++.+.|+..+|...|++...--..-|......+.++....++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 34444455555554443333333 2566666677888888899999999999888765556677778888888888999
Q ss_pred hHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHH
Q 040261 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEA 217 (343)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 217 (343)
+..|...++.+.+..+. -.++.....+.+.+...|.+.+|...|+.....- |+...-......+.+.|+..++
T Consensus 140 ~A~a~~tLe~l~e~~pa-----~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 140 FAAAQQTLEDLMEYNPA-----FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHHHHHHhhcCCc-----cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHH
Confidence 99999999888876532 2345566677788888999999999998887753 4444433344445566766655
Q ss_pred HHHHHHH
Q 040261 218 KCLFIEM 224 (343)
Q Consensus 218 ~~~~~~~ 224 (343)
..-+..+
T Consensus 213 ~aq~~~v 219 (251)
T COG4700 213 NAQYVAV 219 (251)
T ss_pred HHHHHHH
Confidence 5444433
No 196
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.0034 Score=54.12 Aligned_cols=241 Identities=13% Similarity=0.047 Sum_probs=142.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc-CCCc--------cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC
Q 040261 49 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRS-CFTP--------DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK 119 (343)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 119 (343)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.++ .|++++|+++|-.+.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 477788888887777766777777666554331 2110 111111122222 48888998888777654
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChh
Q 040261 120 PDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199 (343)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 199 (343)
| ..+..+.+.|++-.+.++++.--.... -..-..+++.+...+.....|++|.+.+..-..
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~g~~d~d-----D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------- 824 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRNGGSDDD-----DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------- 824 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHccCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 2 245566777887666655543211110 111235778888888888888888888765432
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (343)
....+.++.+..++++.+.+.+.+ +.+....-.+..++...|.-++|.+.+-+. + .|. ..+..|.
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv 889 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCV 889 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHH
Confidence 123456666666666666555443 445666777888888888888888776443 2 222 3456677
Q ss_pred cCCchHHHHHHHHHHHhCCCCccHHHHH--------------HHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 280 LTGRVNRAKELFVSMESNGCMRDVFSYG--------------ILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
..++|.+|.++.++..- |...+.. --|..+.+.|++-.|.+++.+|.++
T Consensus 890 ~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 77888888877765432 2222111 1233455666666666666666543
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.60 E-value=0.0025 Score=49.58 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=60.3
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHH
Q 040261 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV----VTFNVIMNELCKNGKMDEASRLLELMIQIG--VRPDASVYN 272 (343)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 272 (343)
..|...+....+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+.+.- -+.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555554445567777777777777765 2332 355566777777777777777777776642 111234444
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 273 TLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
.+...+...|+.++|..+++.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666777777777777777665
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.59 E-value=0.0011 Score=53.36 Aligned_cols=133 Identities=16% Similarity=0.118 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHH----cCC-CCCH
Q 040261 199 VTYTSLIRGFCYANDWNEAKCLFIEMM----DQGVQ-PNVVTFNVIMNELCKNGKMDEASRLLELMIQ----IGV-RPDA 268 (343)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~ 268 (343)
..|..+...|.-.|+++.|+...+.-+ +.|-+ .....+..+..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 446666666777788888887655432 22322 2345677788888889999999988876543 231 1233
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHh----C-CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 269 SVYNTLMDGFCLTGRVNRAKELFVSMES----N-GCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
...-.|...|.-..++++|+..+.+-.. . ...-....+.+|..+|...|..++|+...+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4555677777777788888887765332 1 1122456778888888888888888877665543
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.56 E-value=0.029 Score=45.24 Aligned_cols=293 Identities=11% Similarity=0.071 Sum_probs=153.4
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH--HHhcCCcchHHHHHHHHHHcCCCccHHH--HHHH
Q 040261 20 FNILFGCLA--KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINC--FCKMGRVSPGFVVLGRILRSCFTPDAVT--FTSL 93 (343)
Q Consensus 20 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 93 (343)
|..|-..+. -.|+-..|.++-.+.... +..|......++.+ -.-.|+.+.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444443 356666676666554321 23344444444433 33457788888888877652 22221 1222
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcc--hHHHHHH
Q 040261 94 IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI--TYSTITD 171 (343)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ 171 (343)
.-..-+.|+.+.|.++-++.-..-.. -...+...+...+..|+++.|+++++.-..... +.++.. .-..|+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-----ie~~~aeR~rAvLLt 234 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKV-----IEKDVAERSRAVLLT 234 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----hchhhHHHHHHHHHH
Confidence 22334567777777777666554322 345666777777778888888877776544332 233321 1112221
Q ss_pred H--H-HhcCChHHHHHHHHHhhhCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040261 172 G--L-CKEGFVDKAKELFLKMKDENINPDVV-TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247 (343)
Q Consensus 172 ~--~-~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (343)
+ . .-..+...|...-.+..+. .|+.. .--....++.+.|+..++-.+++.+-+....|+ .+ ..|....
T Consensus 235 AkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar 306 (531)
T COG3898 235 AKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRAR 306 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhc
Confidence 1 1 1123445555444444332 33321 222334566777777777777777776633333 22 2233322
Q ss_pred ChhHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh-cCChHHHHH
Q 040261 248 KMDEASRLLELMIQI-GVRP-DASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCK-NKEIEGALS 324 (343)
Q Consensus 248 ~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~ 324 (343)
.-+.+..-+++..+. .++| +......+..+-...|++..|..--+..... .|....|..|.+.-.. .||-.++..
T Consensus 307 ~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 307 SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred CCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHH
Confidence 223333333333321 1233 3455556666677777777777666666553 4666677666665433 377777777
Q ss_pred HHHHHHhC
Q 040261 325 LYSEMLSK 332 (343)
Q Consensus 325 ~~~~~~~~ 332 (343)
.+-+..+.
T Consensus 385 wlAqav~A 392 (531)
T COG3898 385 WLAQAVKA 392 (531)
T ss_pred HHHHHhcC
Confidence 77666544
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.52 E-value=0.0017 Score=52.25 Aligned_cols=270 Identities=14% Similarity=0.064 Sum_probs=161.4
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHH----HHHHHHHHHHhcCCcchHHHHHHHHHH--c--CCC-ccHHHHHHHH
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDLY----TYNILINCFCKMGRVSPGFVVLGRILR--S--CFT-PDAVTFTSLI 94 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~~~-~~~~~~~~l~ 94 (343)
..-+++.|+....+.+|+..++.|. .|.. .|..+.++|.-.+++++|+++...=+. + |-+ -.......+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 4567899999999999999999883 3333 466677778888889998887653221 1 100 0112223344
Q ss_pred HHHhhcCcHHHHHHHHHHH----HhcCCC-CCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKL----RAFGCK-PDVFTYTTLINGLCRTGH--------------------TIVALNLFEEMA 149 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 149 (343)
..+--.|.+++|+-...+- ++.|-+ ....++-.+...|...|+ ++.|.++|..-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4444556777765543332 222211 122344455666655442 233444443322
Q ss_pred ccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHh----hhCCC-CCChhhHHHHHHHHhccCcHHHHHHHHHHH
Q 040261 150 NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM----KDENI-NPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224 (343)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (343)
+.....+- -.....+|..|...|.-.|+++.|+...+.- .+.|- ......+..+..++.-.|+++.|.+.++..
T Consensus 183 ~l~~~lgD-r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 183 ELSEKLGD-RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHhhh-HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 11100000 0122356667777777889999998776542 22221 123456778888999999999999988765
Q ss_pred HHc----CC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 040261 225 MDQ----GV-QPNVVTFNVIMNELCKNGKMDEASRLLELMIQI----G-VRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294 (343)
Q Consensus 225 ~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (343)
... |- .....+...|...|.-..++++|+.++.+-... + ..-....+-.|..+|...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 432 21 223445567888888888999999888765432 1 1123567778888999999999998877654
Q ss_pred H
Q 040261 295 E 295 (343)
Q Consensus 295 ~ 295 (343)
.
T Consensus 342 l 342 (639)
T KOG1130|consen 342 L 342 (639)
T ss_pred H
Confidence 4
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.51 E-value=0.0042 Score=43.71 Aligned_cols=94 Identities=9% Similarity=-0.102 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (343)
......-+...|++++|..+|+-+...+ +-+..-+..|..++-..+++++|...|......+. -|+..+-....++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHH
Confidence 3334444455666666666666655443 23444455555555556666666666665554432 233444445556666
Q ss_pred cCcHHHHHHHHHHHHh
Q 040261 100 ESRIMEAAALFTKLRA 115 (343)
Q Consensus 100 ~~~~~~a~~~~~~~~~ 115 (343)
.|+.+.|...|+....
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 6666666666666555
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.49 E-value=0.0047 Score=48.11 Aligned_cols=99 Identities=14% Similarity=0.031 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHH
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFGCKPD--VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (343)
|...+....+.|++++|...|+.+.+..+... ...+..+..+|...|++++|...|+.+....+. .+.....+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~----s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK----SPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----CcchhHHHH
Confidence 44444444455677777777777666532211 235555666667777777777777776655421 111233344
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhC
Q 040261 168 TITDGLCKEGFVDKAKELFLKMKDE 192 (343)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (343)
.+..++...|+.++|..+|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566666777777766666554
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.47 E-value=0.039 Score=44.53 Aligned_cols=253 Identities=15% Similarity=0.109 Sum_probs=163.5
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHH--HHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHH
Q 040261 27 LAKNKHYDTVLSLFKRLNSIGLFPDLYT--YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104 (343)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (343)
-.-.|+++.|.+-|+.|.. .|.... ...|.-...+.|+.+.|.++-+.....- +.-...+...+...+..|+|+
T Consensus 130 al~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 3457999999999999986 333332 2333334457799999999988887653 224678889999999999999
Q ss_pred HHHHHHHHHHhcC-CCCCHHHH--HHHHHHHH-hcCChHHHHHHHHHHHccCCCCCccccCCcc-hHHHHHHHHHhcCCh
Q 040261 105 EAAALFTKLRAFG-CKPDVFTY--TTLINGLC-RTGHTIVALNLFEEMANGNGEFGVVCKPDAI-TYSTITDGLCKEGFV 179 (343)
Q Consensus 105 ~a~~~~~~~~~~~-~~~~~~~~--~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 179 (343)
.|+++++.-+... +.++..-- ..|+.+-. ..-+.+-+...=....... +.|+.. .-..-..++.+.|+.
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K------L~pdlvPaav~AAralf~d~~~ 279 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK------LAPDLVPAAVVAARALFRDGNL 279 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh------cCCccchHHHHHHHHHHhccch
Confidence 9999999877653 33343221 12222211 1112222222222222222 445433 233345788999999
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhCCChhHHHHHHH
Q 040261 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPN-VVTFNVIMNELCKNGKMDEASRLLE 257 (343)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (343)
.++-.+++.+-+....|+. +. +..+.+.|+ .+..-+++..+. .++|+ ......+..+....|++..|..--+
T Consensus 280 rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 280 RKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred hhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999999887544443 22 233445554 344444443322 24554 5566677788889999999988877
Q ss_pred HHHHcCCCCCHHHHHHHHHHHh-cCCchHHHHHHHHHHHhC
Q 040261 258 LMIQIGVRPDASVYNTLMDGFC-LTGRVNRAKELFVSMESN 297 (343)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~ 297 (343)
...+. .|....|..|.+.-. ..||-.++...+.+..+.
T Consensus 354 aa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 354 AAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77664 688888888877554 459999999999888875
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.41 E-value=0.039 Score=45.02 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=17.6
Q ss_pred ChhhHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
+-..+..++.++.-.|++++|....++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3444455555555566666666666666554
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.36 E-value=0.0014 Score=39.83 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=33.7
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 25 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
..+.+.+++++|+++++.+...+ |.+...+.....++.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556666666666666666544 334455555666666666666666666666654
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.36 E-value=0.0019 Score=39.30 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=25.2
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 040261 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
.+.+.+++++|..++++++..+ +.+...+.....++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444555555554444443 33344444444444445555555555544444
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.35 E-value=0.029 Score=48.27 Aligned_cols=87 Identities=11% Similarity=0.163 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-----------CHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHcCCCc
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFP-----------DLYTYNILINCFCKMGRVS--PGFVVLGRILRSCFTP 85 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~ 85 (343)
.+..-+..+...|.+++|.++-- .|+.. ++-.++..=.+|.+..+.. +...-++++.++|-.|
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iac----lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIAC----LGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccchhhhhccchhhhhcccc----cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 34455666778888888766521 12111 1222333334444444332 2233344455555555
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 040261 86 DAVTFTSLIKGLCAESRIMEAAALFTK 112 (343)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 112 (343)
+... +...++-.|.+.+|.++|.+
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 5532 33344455666666666644
No 208
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.32 E-value=0.06 Score=43.42 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=60.4
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (343)
+.+..+.-+...|+...|.++-.+. . .|+..-|...+.+++..+++++...+... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4444455556666666666654444 1 35666666667777777777666554321 123355666667777
Q ss_pred cCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 040261 280 LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325 (343)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 325 (343)
+.|+..+|..+..++. +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 7777777766665521 13345555666666665443
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.096 Score=45.74 Aligned_cols=119 Identities=11% Similarity=-0.046 Sum_probs=71.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHh-CCCCCCHHHHHHHH----------HHHHhcCCcchHHHHHHHHHHcCC
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNS-IGLFPDLYTYNILI----------NCFCKMGRVSPGFVVLGRILRSCF 83 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~~~~~~~~~~~ 83 (343)
|.+..|..+.....+.-.++.|...|-+... .|++ ....+- ..-.--|++++|.++|-.+.+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik----~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK----LVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh----HHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 7788999999999988899999988876643 2321 111111 11223488889988887776542
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 040261 84 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK--PDVFTYTTLINGLCRTGHTIVALNLFEE 147 (343)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 147 (343)
..+..+.+.|++-.+.++++.--. +.. .-..+|+.+...+.....+++|.+.+..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234455566777666655543110 000 0123566666666666666666666554
No 210
>PRK15331 chaperone protein SicA; Provisional
Probab=97.30 E-value=0.019 Score=40.50 Aligned_cols=91 Identities=12% Similarity=0.014 Sum_probs=66.9
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch
Q 040261 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284 (343)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 284 (343)
..-+...|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...|......+ .-|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 334567888888888888887764 3345556677777778888888888888776654 33445556667788888888
Q ss_pred HHHHHHHHHHHhC
Q 040261 285 NRAKELFVSMESN 297 (343)
Q Consensus 285 ~~a~~~~~~~~~~ 297 (343)
+.|...|.....+
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888773
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.049 Score=41.50 Aligned_cols=185 Identities=10% Similarity=0.027 Sum_probs=109.2
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC
Q 040261 99 AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (343)
..|...+.+.-+..+... ....+..+-.....+...+.|++-.. .+.+.++....-.|.
T Consensus 134 ~lgnpqesLdRl~~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl~-------------~Vmy~~~~~llG~kE 192 (366)
T KOG2796|consen 134 YLGNPQESLDRLHKLKTV--------VSKILANLEQGLAEESSIRLWRKRLG-------------RVMYSMANCLLGMKE 192 (366)
T ss_pred hcCCcHHHHHHHHHHHHH--------HHHHHHHHHhccchhhHHHHHHHHHH-------------HHHHHHHHHHhcchh
Confidence 345555555444444321 12233333333344556666665432 345566666677777
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHhCCChhHHH
Q 040261 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN-----VIMNELCKNGKMDEAS 253 (343)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~ 253 (343)
+.-....+.+..+...+-++.....+.+.-.+.|+.+.|...|++..+..-..+..+++ .....+.-.+++..|.
T Consensus 193 y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~ 272 (366)
T KOG2796|consen 193 YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAH 272 (366)
T ss_pred hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHH
Confidence 77777777777776655667777777777778888888888887666543233333333 2334455567777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHH
Q 040261 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307 (343)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (343)
..+.+....+ +.++...|.-.-+..-.|+...|.+..+.+.+. .|...+-+
T Consensus 273 r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 273 RFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 7777777664 334444444444445567888888888888775 34444333
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.28 E-value=0.032 Score=39.35 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=46.0
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHHHH
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ-----IGVRPDASVY 271 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 271 (343)
....++..+...|++++|..+.+.+.... +-+...|..++.++...|+...|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34556666777788888888888877764 55677788888888888888888888877643 3777776543
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.27 E-value=0.074 Score=43.46 Aligned_cols=169 Identities=11% Similarity=0.082 Sum_probs=109.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhhhCC---CCCChhhHHHHHHHHhc---cCcHHHHHHHHHHHHHcCCCCCHHH
Q 040261 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDEN---INPDVVTYTSLIRGFCY---ANDWNEAKCLFIEMMDQGVQPNVVT 235 (343)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (343)
+..+...++-.|....+++..+++.+.+.... +.-....-....-++.+ .|+.++|..++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34455566777999999999999999987751 11122222334455566 8999999999999766666788889
Q ss_pred HHHHHHHHHh---------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc----hHHHHHHH----HHHHhCC
Q 040261 236 FNVIMNELCK---------NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR----VNRAKELF----VSMESNG 298 (343)
Q Consensus 236 ~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~----~~~~~~~ 298 (343)
|..+.+.|-. ....++|...|.+.-+.. |+...=-.++..+...|. -.+..++- ..+.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 9888877642 224677888888776653 443221112222222222 22333333 1222233
Q ss_pred ---CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 299 ---CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 299 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
-..+...+.+++.++.-.|++++|.+.+++|...
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2346667788899999999999999999999866
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.24 E-value=0.014 Score=48.30 Aligned_cols=66 Identities=15% Similarity=0.053 Sum_probs=57.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL----YTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
|.+...++.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999988854 553 35888999999999999999999999875
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.16 E-value=0.012 Score=39.99 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhh
Q 040261 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200 (343)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 200 (343)
|..++..++.++++.|+.+....+++..-.-+... ... .+. .-......|+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~------~~~-----------~~~---------~~~~spl~Pt~~l 54 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG------KKK-----------EGD---------YPPSSPLYPTSRL 54 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC------ccc-----------cCc---------cCCCCCCCCCHHH
Confidence 34566677777777777777777776553322100 000 000 1122234455555
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNE 242 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 242 (343)
..+++.+|+..+++..|.++++...+. +++.+...|..|+.-
T Consensus 55 L~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 55 LIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 555555555555555555555555443 444445555555543
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.12 E-value=0.00083 Score=41.53 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccC-CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040261 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP-DAITYSTITDGLCKEGFVDKAKELFLKMKD 191 (343)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (343)
.+++.+...|...|++++|+..+++..+.....+. ..+ ...++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777888888899999998888887654211110 122 256778888889999999999998887643
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.10 E-value=0.015 Score=39.57 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC-CCCccHHHHHHHHHHHH
Q 040261 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYGILINGYC 314 (343)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 314 (343)
..|+..+..+++.+|+..+++..|.++.+.+.+. +++.+..+|..|+.-+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4577788888888888888888888888776653 55556777777776543
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.08 E-value=0.0034 Score=38.72 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHH
Q 040261 235 TFNVIMNELCKNGKMDEASRLLELMI 260 (343)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (343)
+++.+...|...|++++|+..+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 219
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.02 E-value=0.15 Score=42.25 Aligned_cols=297 Identities=12% Similarity=0.091 Sum_probs=158.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCC----CCHHHHHHHHHHHHhc--------CCcchHHHHHHHHH-------Hc
Q 040261 21 NILFGCLAKNKHYDTVLSLFKRLNSIGLF----PDLYTYNILINCFCKM--------GRVSPGFVVLGRIL-------RS 81 (343)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~-------~~ 81 (343)
+..++++...|++.++..+++++...=.+ .+..+|+.++-.++++ ...+-+.++++.+. ..
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~ 211 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAF 211 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 44578888999999999999988764333 6888888865555432 22222333333221 10
Q ss_pred ------CCCccHHHHHHHH----------------------------------HHHhh--cCcHHHHHHHHHHHHhcCCC
Q 040261 82 ------CFTPDAVTFTSLI----------------------------------KGLCA--ESRIMEAAALFTKLRAFGCK 119 (343)
Q Consensus 82 ------~~~~~~~~~~~l~----------------------------------~~~~~--~~~~~~a~~~~~~~~~~~~~ 119 (343)
.+-|.......++ ..+.. ..+.+++..+.+.+....+.
T Consensus 212 d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~ 291 (549)
T PF07079_consen 212 DQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIE 291 (549)
T ss_pred hhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHH
Confidence 0111111111111 11110 01334444444433332111
Q ss_pred C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchH-------HHHHHHHHh-c---CChHHHHH
Q 040261 120 P----DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY-------STITDGLCK-E---GFVDKAKE 184 (343)
Q Consensus 120 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~-~---~~~~~a~~ 184 (343)
+ -..+|..++....+.++...|.+.+.-+...+ |+...- ..+-+..+. . -+...-+.
T Consensus 292 ~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--------p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~ 363 (549)
T PF07079_consen 292 KLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--------PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLN 363 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--------CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHH
Confidence 1 23456677777888888888888888777654 332211 112222221 1 11223344
Q ss_pred HHHHhhhCCCCCChhhHHHHHH---HHhccC-cHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHh---CCChhHHH
Q 040261 185 LFLKMKDENINPDVVTYTSLIR---GFCYAN-DWNEAKCLFIEMMDQGVQPNVVTFNV----IMNELCK---NGKMDEAS 253 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~---~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~---~~~~~~a~ 253 (343)
+++.+...++.. ...-..++. -+-+.| .-++|+.+++.+.+-. +-|...-|. +=.+|.+ .....+-.
T Consensus 364 lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 364 LWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 555554443321 112222222 222334 4788899988887642 222222222 2223322 23344444
Q ss_pred HHHHHHHHcCCCCC----HHHHHHHHH--HHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 040261 254 RLLELMIQIGVRPD----ASVYNTLMD--GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327 (343)
Q Consensus 254 ~~~~~~~~~~~~~~----~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 327 (343)
.+-+-+.+.|++|- ...-|.|.+ -+..+|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++.
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44455556676653 333444444 34577899988877666666 47899999999999999999999999987
Q ss_pred HH
Q 040261 328 EM 329 (343)
Q Consensus 328 ~~ 329 (343)
++
T Consensus 520 ~L 521 (549)
T PF07079_consen 520 KL 521 (549)
T ss_pred hC
Confidence 75
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.98 E-value=0.16 Score=43.69 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCCh-----hhHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCHHH
Q 040261 166 YSTITDGLCKEGFVDKAKELFLKMKDEN-INPDV-----VTYTSLIRGFCY----ANDWNEAKCLFIEMMDQGVQPNVVT 235 (343)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (343)
+..++....=.||-+.+++.+....+.+ +.-.. -.|...+..++. ..+.+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3445555666799999999998876542 22111 223333333332 45678999999999987 677666
Q ss_pred HHHH-HHHHHhCCChhHHHHHHHHHHHcCC---CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 040261 236 FNVI-MNELCKNGKMDEASRLLELMIQIGV---RPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311 (343)
Q Consensus 236 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 311 (343)
|... .+.+...|++++|.+.|++...... +.....+--+...+.-.++|++|...|..+.+.. ..+...|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 6543 4567789999999999998764211 2234455667777888999999999999999864 334445544443
Q ss_pred -HHHhcCCh-------HHHHHHHHHHHh
Q 040261 312 -GYCKNKEI-------EGALSLYSEMLS 331 (343)
Q Consensus 312 -~~~~~~~~-------~~a~~~~~~~~~ 331 (343)
++...|+. ++|.+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 35567777 888888887754
No 221
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.95 E-value=0.094 Score=38.83 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=37.0
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 13 SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
.|.-+.+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-+ ++.-.|++..|.+-+...-+.
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 33456667777777777777777777777666644211111222222 233446666666655555544
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.93 E-value=0.11 Score=39.54 Aligned_cols=53 Identities=8% Similarity=-0.025 Sum_probs=27.3
Q ss_pred hcCCcchHHHHHHHHHHcCC--CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 040261 64 KMGRVSPGFVVLGRILRSCF--TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
+.|++++|.+.|+.+..+.+ +-...+...++-++.+.++++.|+..+++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44666666666666554321 112333444445555556666666666655554
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.81 E-value=0.093 Score=45.06 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=107.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH----hcCChHHHHHHHHHhhhCCCCCChhhHHH
Q 040261 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC----KEGFVDKAKELFLKMKDENINPDVVTYTS 203 (343)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (343)
++....-.|+-+.+++.+.+..+..+-.++....-.-.|...+..+. ...+.+.|.++++.+.+.- |+...|..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 44455568999999999998877543111100111122333333333 2556789999999998863 56555544
Q ss_pred H-HHHHhccCcHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HH
Q 040261 204 L-IRGFCYANDWNEAKCLFIEMMDQG--V-QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD-GF 278 (343)
Q Consensus 204 l-~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~ 278 (343)
. .+.+...|+.++|.+.++...... . +.....+--+...+.-..++++|...|..+.+.. ..+..+|.-+.- ++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 3 456778899999999999766421 1 1223344556777888999999999999999864 445555554444 34
Q ss_pred hcCCch-------HHHHHHHHHHH
Q 040261 279 CLTGRV-------NRAKELFVSME 295 (343)
Q Consensus 279 ~~~~~~-------~~a~~~~~~~~ 295 (343)
...|+. ++|.++|.+..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 456666 88888887664
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.06 Score=43.70 Aligned_cols=96 Identities=15% Similarity=0.070 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHH-HHHHH
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG-ILING 312 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~ 312 (343)
.++..+..++.+.+++..|+..-+...+.+ ++|....-.=..++...|+++.|+..|+++.+. .|+..... .++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 445666777777788888888877777776 666766666677777788888888888887775 35444333 33333
Q ss_pred HHhcCChH-HHHHHHHHHHhC
Q 040261 313 YCKNKEIE-GALSLYSEMLSK 332 (343)
Q Consensus 313 ~~~~~~~~-~a~~~~~~~~~~ 332 (343)
-.+..+.. ...++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 33333333 336677777643
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.68 E-value=0.11 Score=43.96 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=96.8
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 040261 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209 (343)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (343)
+...-.++++.+.+..+.-.-.. ..+..-.+.++..+.+.|.++.|+++..+-.. -.....
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-------~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl 329 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-------NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELAL 329 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-------G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-------cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHH
Confidence 34455778888766665211110 11244577888888889999988887644221 233445
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 040261 210 YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289 (343)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 289 (343)
+.|+++.|.++.+. ..+...|..|.....+.|+++-|...|.+... +..|+-.|...|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 67888888776543 34677888888888889999888888877532 4456667778888888888
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 040261 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSE 328 (343)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 328 (343)
+.+.....| -++....++.-.|+.++..+++.+
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 877777665 244555556666777777766654
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.062 Score=43.61 Aligned_cols=126 Identities=14% Similarity=0.134 Sum_probs=94.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhC-----CCC---------CChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHH
Q 040261 170 TDGLCKEGFVDKAKELFLKMKDE-----NIN---------PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235 (343)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (343)
...+.+.|++..|...|++.... +.+ .-..++..+..++.+.+++.+|+......++.+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 35678899999999888875432 111 123457778889999999999999999999885 667777
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch-HHHHHHHHHHHhC
Q 040261 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV-NRAKELFVSMESN 297 (343)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 297 (343)
.-.-..++...|+++.|+..|+++.+.. +-|-.+-+.|+.+-.+.... +...++|..|...
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7778899999999999999999999974 44555555666555555444 3447788887653
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.65 E-value=0.11 Score=43.37 Aligned_cols=66 Identities=11% Similarity=-0.085 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccH---HHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 040261 50 PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA---VTFTSLIKGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
.+...++.+..+|.+.|++++|+..|++.++.++. +. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35668888999999999999999999998886433 22 35888999999999999999999998875
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.098 Score=41.46 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=104.3
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChh
Q 040261 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV----VTFNVIMNELCKNGKMD 250 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 250 (343)
-.|+..+|...++++.+. .|.|...+...=.+|...|+...-...++++... ..++. ..-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 457777777788887775 4557777777778888889888888888887654 12333 33334455567889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC---CCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 040261 251 EASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN---GCMRDVFSYGILINGYCKNKEIEGALSLYS 327 (343)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 327 (343)
+|++.-++..+.+ +.|.-...++...+.-.|++.++.++..+-... +...-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988876 667777777888888888999988877654321 000011122233344566688999998887
Q ss_pred HHH
Q 040261 328 EML 330 (343)
Q Consensus 328 ~~~ 330 (343)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.62 E-value=0.15 Score=43.17 Aligned_cols=130 Identities=13% Similarity=0.061 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040261 54 TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133 (343)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (343)
..+.++.-+.+.|-.+.|+++... + ..-.....+.|+++.|.++.++. .+...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 345555555555555555444322 1 11223333445555555443321 24445555555555
Q ss_pred hcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc
Q 040261 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213 (343)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (343)
+.|+++.|.+.+.+.. -+..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+
T Consensus 359 ~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd 417 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGD 417 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-
T ss_pred HcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCC
Confidence 5555555555555422 244444555555555555555544444331 3333334444455
Q ss_pred HHHHHHHHH
Q 040261 214 WNEAKCLFI 222 (343)
Q Consensus 214 ~~~a~~~~~ 222 (343)
.++..+++.
T Consensus 418 ~~~cv~lL~ 426 (443)
T PF04053_consen 418 VEECVDLLI 426 (443)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 230
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.22 Score=38.15 Aligned_cols=137 Identities=8% Similarity=-0.014 Sum_probs=106.3
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH-----HH
Q 040261 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVY-----NT 273 (343)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~ 273 (343)
...+.++.++.-.|.+.-..+.++.+++...+.++.....+++.-.+.||.+.|...|++..+..-+.|...+ ..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456677788888999999999999999876778888899999999999999999999987664334443333 33
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 040261 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRP 336 (343)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 336 (343)
....|.-++++..|...+.+..... +.++...|.-.-+..-.|+...|++.++.|...-..|
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3445667788999999998888764 4466677777777777899999999999999764433
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.57 E-value=0.28 Score=39.02 Aligned_cols=227 Identities=12% Similarity=0.091 Sum_probs=120.5
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHHHHH-------HHHHHHhcC-ChHHHHHHHHHHHcc----CCCCCccccCC----
Q 040261 99 AESRIMEAAALFTKLRAFGCKPDVFTYTT-------LINGLCRTG-HTIVALNLFEEMANG----NGEFGVVCKPD---- 162 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~-~~~~a~~~~~~~~~~----~~~~~~~~~~~---- 162 (343)
+.|+.+.|..++.+........++..... +.......+ +++.|..++++..+. +.... ..++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~--~~~~~~el 82 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK--LSPDGSEL 82 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc--cCCcHHHH
Confidence 45666666666666554321112211111 122233344 777777777665443 11000 1222
Q ss_pred -cchHHHHHHHHHhcCChH---HHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHH
Q 040261 163 -AITYSTITDGLCKEGFVD---KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238 (343)
Q Consensus 163 -~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 238 (343)
..+...++.+|...+..+ +|..+++.+.... +-.+..+..-+..+.+.++.+++.+.+.+|...- .-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 245677778888777755 5555666664443 2235556666777777899999999999999872 323344555
Q ss_pred HHHHH---HhCCChhHHHHHHHHHHHcCCCCCHH-HHHH-HHH---HHhcCCc------hHHHHHHHHHHHhC-CCCccH
Q 040261 239 IMNEL---CKNGKMDEASRLLELMIQIGVRPDAS-VYNT-LMD---GFCLTGR------VNRAKELFVSMESN-GCMRDV 303 (343)
Q Consensus 239 l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~~---~~~~~~~------~~~a~~~~~~~~~~-~~~~~~ 303 (343)
++..+ .. .....+...+..+....+.|... .... ++. ...+.++ .+....+++.+.+. +.+.+.
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 55444 33 33456667776666654555543 1111 111 1112211 44455555543322 222333
Q ss_pred HHHH---HH----HHHHHhcCChHHHHHHHHHHH
Q 040261 304 FSYG---IL----INGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 304 ~~~~---~l----~~~~~~~~~~~~a~~~~~~~~ 330 (343)
.+-. ++ +..+.+.++|+.|.++|+-..
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3322 22 344667899999999998544
No 232
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.56 E-value=0.31 Score=39.42 Aligned_cols=111 Identities=16% Similarity=0.232 Sum_probs=87.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243 (343)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (343)
.+.+..+.-+...|+...|.++-++.. .|+..-|...+.+++..++|++...+... +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 355666777788899988888876653 37899999999999999999988876532 22457789999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 040261 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (343)
.+.|+..+|..+..++ ++ ..-+..|.+.|++.+|.+...+.
T Consensus 248 ~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999988772 22 44577889999999998775544
No 233
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.48 E-value=0.011 Score=31.64 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNIL 58 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 58 (343)
.++..+...|.+.|++++|.++|++..+.. +-|...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 356666677777777777777777766643 3344444433
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.45 E-value=0.15 Score=34.50 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCC
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 299 (343)
......+......|..++..+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455666666777777777777766533 56666667777777777777777777777776663
No 235
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.45 E-value=0.54 Score=41.01 Aligned_cols=201 Identities=18% Similarity=0.204 Sum_probs=108.4
Q ss_pred HHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCc-cHHHHHH-----HHHHHhhcCcHHHHHHHHHHH
Q 040261 40 FKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP-DAVTFTS-----LIKGLCAESRIMEAAALFTKL 113 (343)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~ 113 (343)
++++++.|-.|+... +...++-.|++.+|.++|.+- |.+. -...|.- ...-+...|..++-..+.++-
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR 696 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR 696 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 455666776677643 445567778888888888653 2220 0111111 222333444444433333332
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH------HHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHH
Q 040261 114 RAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE------EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187 (343)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (343)
.+- ..+..--.+....+...|+..+|..+.- -+.+.+... ...+..+...+...+.+...+..|.++|.
T Consensus 697 A~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl---d~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 697 ADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL---DKAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred HHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc---chhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 111 1111111234455666777777665431 111111000 12233455555555666777788888888
Q ss_pred HhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHhCCChhHHHHHH
Q 040261 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV-----------TFNVIMNELCKNGKMDEASRLL 256 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~ 256 (343)
+|-. ...+++.+...++|.+|..+-+...+. .|+.. -|...-.+|.+.|+-.+|.+++
T Consensus 772 k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vL 840 (1081)
T KOG1538|consen 772 KMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVL 840 (1081)
T ss_pred Hhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHH
Confidence 7754 335678888999999999988776553 33321 2333445677777777777777
Q ss_pred HHHHHc
Q 040261 257 ELMIQI 262 (343)
Q Consensus 257 ~~~~~~ 262 (343)
+.+...
T Consensus 841 eQLtnn 846 (1081)
T KOG1538|consen 841 EQLTNN 846 (1081)
T ss_pred HHhhhh
Confidence 776543
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.31 Score=38.12 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=22.9
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 040261 28 AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79 (343)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (343)
...|++.+|..+|....... +-+...-..+..++...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34445555555554444322 1223333444445555555555555554443
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.44 E-value=0.15 Score=34.47 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=78.3
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC
Q 040261 99 AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (343)
-.|..++..++..+.... .+..-++-++--....-+-+-..++++..-+.. |. ..+|+
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF---------Di----------s~C~N 71 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF---------DI----------SKCGN 71 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS----------G----------GG-S-
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc---------Cc----------hhhcc
Confidence 347777777777777665 244444545544444445555555555544332 11 23344
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 040261 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258 (343)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (343)
.......+-.+-. +.......+......|.-++..++...+.+.+ .+++...-.+..+|.+.|+..++.+++.+
T Consensus 72 lKrVi~C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 72 LKRVIECYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4444444433221 34456666777788888888888888887643 67777788888888889998888888888
Q ss_pred HHHcCCC
Q 040261 259 MIQIGVR 265 (343)
Q Consensus 259 ~~~~~~~ 265 (343)
+.+.|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 8888754
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.39 E-value=0.18 Score=34.86 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=32.0
Q ss_pred HHhccCcHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 207 GFCYANDWNEAKCLFIEMMDQGV--QPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
...+.|++++|.+.|+.+...-. +-....--.++.++.+.++++.|...+++.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34456666666666666665510 112334445566666666666666666666665
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.19 Score=38.77 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=65.0
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHH
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGV--QPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG--VRPDASVYNTLM 275 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~ 275 (343)
.|+..+.. .+.|++..|...|...++... .-....+-.|..++...|+++.|..+|..+.+.- .+.-+..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56666654 456678888888888777621 1112334457778888888888888887777642 122245666677
Q ss_pred HHHhcCCchHHHHHHHHHHHhC
Q 040261 276 DGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777888888888888888776
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.36 E-value=0.29 Score=39.37 Aligned_cols=56 Identities=5% Similarity=-0.107 Sum_probs=25.4
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 040261 204 LIRGFCYANDWNEAKCLFIEMMDQGV-----QPNVVTFNVIMNELCKNGKMDEASRLLELM 259 (343)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (343)
+..++...+.++++++.|+...+... -....++-.|...|.+..|+++|..+..++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKA 188 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhH
Confidence 33444444555555555554443210 111234445555555555555555444443
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.36 Score=37.77 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=79.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 040261 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208 (343)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (343)
.......|++.+|...|+...... +.+...-..+..+|...|+.+.|..++..+....-.........-+..+
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 344566778888888888777764 3445666777778888888888888887765542222222222223333
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCC
Q 040261 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV-RPDASVYNTLMDGFCLTG 282 (343)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 282 (343)
.+.....+...+-.+.-.. +-|...--.+...+...|+.+.|...+-.+.+.+. --|...-..++..+.--|
T Consensus 214 ~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 214 EQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333333333333321 22444444566666667777777666655554321 223344455555554444
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.33 E-value=0.2 Score=34.65 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=61.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL--FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (343)
.+...+..-.....+.|++++|.+.|+.+...-. +-...+-..++.++.+.++++.|...+++.++..+......|..
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3444555566667788999999999988876421 22345667788889999999999999999988765544455666
Q ss_pred HHHHHhhcCc
Q 040261 93 LIKGLCAESR 102 (343)
Q Consensus 93 l~~~~~~~~~ 102 (343)
.+.+++....
T Consensus 88 Y~~gL~~~~~ 97 (142)
T PF13512_consen 88 YMRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHHH
Confidence 6666554433
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.14 Score=39.37 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCChhhH
Q 040261 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI--NPDVVTY 201 (343)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 201 (343)
.|+.-+.. .+.|++..|...|....+..+.. .-....+-.|..++...|+++.|..+|..+.+.-. +--+..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 34444433 33455666666666666654221 12234455556666666666666666666554311 1112344
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 202 TSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
--+..+..+.|+.++|...|+++.+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44555555666666666666666554
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.36 Score=36.59 Aligned_cols=207 Identities=14% Similarity=0.102 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 040261 53 YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGL 132 (343)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (343)
..|.....+|....++++|...+.+..+. .+.+...|+ .. ..+++|.-+.+++... .--...|......|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 45777777888888999988877776642 232333332 11 2345555555555543 11233455666778
Q ss_pred HhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC---CC--CCChhhHHHHHHH
Q 040261 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE---NI--NPDVVTYTSLIRG 207 (343)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~ 207 (343)
...|.++.|-..+++.-+. ...-++++|++++++...- +- .--...+..+-+.
T Consensus 102 ~E~GspdtAAmaleKAak~----------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 8888887777766665432 1223445555555443221 00 0012233444455
Q ss_pred HhccCcHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCCHHHHHHHHHHHh
Q 040261 208 FCYANDWNEAKCLFIEMMD----QGVQPNV-VTFNVIMNELCKNGKMDEASRLLELMIQIGV---RPDASVYNTLMDGFC 279 (343)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 279 (343)
+++...+.+|-..+.+-.. -.-.++. ..|-..+-.+.-..|+..|.+.++.-.+.+- +.+..+...|+.+|
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 6666666666554433211 1112222 3344555566667788888888887655421 33456777777665
Q ss_pred cCCchHHHHHHHH
Q 040261 280 LTGRVNRAKELFV 292 (343)
Q Consensus 280 ~~~~~~~a~~~~~ 292 (343)
..|+.+++..++.
T Consensus 239 d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 DEGDIEEIKKVLS 251 (308)
T ss_pred ccCCHHHHHHHHc
Confidence 4677777776653
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.4 Score=36.41 Aligned_cols=206 Identities=12% Similarity=0.025 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHH
Q 040261 88 VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYS 167 (343)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (343)
..|.....+|-...++++|...+.+..+- ...+...| .....++.|.-+.+++... +.-...|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--------sEvvdl~e 95 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--------SEVVDLYE 95 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--------HHHHHHHH
Confidence 34555566677778888887776665531 11111111 1223344555555555442 12234555
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc---C--CCCCHHHHHHHHHH
Q 040261 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ---G--VQPNVVTFNVIMNE 242 (343)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~ 242 (343)
.-...|..+|.++.|-..+++.-+. ..+-++++|+.++++.... + ..--...+..+.+.
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 6667788888888888888775432 1223344455554443321 1 01112234445556
Q ss_pred HHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHHHhCC---CCccHHHHHHHHHHHH
Q 040261 243 LCKNGKMDEASRLLELMIQI----GVRPD-ASVYNTLMDGFCLTGRVNRAKELFVSMESNG---CMRDVFSYGILINGYC 314 (343)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~ 314 (343)
+.+...+++|-..+.+-... .--++ ...|...|-.+....++..|.+.++.-.+.+ -+-+..+...|+.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 66777777766555443221 11122 2345666667778889999999998855432 2336678888888874
Q ss_pred hcCChHHHHHHH
Q 040261 315 KNKEIEGALSLY 326 (343)
Q Consensus 315 ~~~~~~~a~~~~ 326 (343)
.|+.+++.+++
T Consensus 240 -~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 -EGDIEEIKKVL 250 (308)
T ss_pred -cCCHHHHHHHH
Confidence 47878776654
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.09 E-value=0.54 Score=37.40 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=13.5
Q ss_pred HhcCChhHHHHHHHHhHh
Q 040261 28 AKNKHYDTVLSLFKRLNS 45 (343)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~ 45 (343)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 467888888888877754
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.98 E-value=0.086 Score=40.70 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=59.6
Q ss_pred CChhhHHHHHHHHHhc-----CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHH
Q 040261 15 PPVCSFNILFGCLAKN-----KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (343)
.+-.+|-..+..+... +..+-....++.|.+.|+..|..+|+.|++.+-+-.- .|. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HH
Confidence 3455566666555432 4455556666677777777777777777766543211 111 01
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (343)
+....--|- .+-+-+++++++|...|+.||..+-..+++++.+.+..
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111111 12244677777888788777877777777777776653
No 248
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.96 E-value=0.14 Score=40.04 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHh-----CCCCccHHHHHHH
Q 040261 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-----NGCMRDVFSYGIL 309 (343)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 309 (343)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|...|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555555555555555555555554 44555556666666666666666555555443 3555555554444
Q ss_pred HHH
Q 040261 310 ING 312 (343)
Q Consensus 310 ~~~ 312 (343)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.96 E-value=0.12 Score=39.94 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 040261 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283 (343)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (343)
+-+++++++|..+|+-||..+-..|+.+|.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3466777777777777777777777777766654
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.95 E-value=0.044 Score=29.25 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=9.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 040261 239 IMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
+..+|...|++++|.++++++++
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333344444444444444333
No 251
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.94 E-value=1.1 Score=39.67 Aligned_cols=180 Identities=14% Similarity=0.069 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHccCCCCCccccCCcchHHHHHHH-----HHhcCChHHHHHHHHHhhh-------CCCCCChhhHHHHH
Q 040261 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG-----LCKEGFVDKAKELFLKMKD-------ENINPDVVTYTSLI 205 (343)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~ 205 (343)
...+.++++.....+ +...-..+..+ +....|.+.|+.+|+.+.+ .+ .......+.
T Consensus 228 ~~~a~~~~~~~a~~g---------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg 295 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLG 295 (552)
T ss_pred hhHHHHHHHHHHhhc---------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHH
Confidence 567888888887766 22222222222 4467789999999998866 44 334566677
Q ss_pred HHHhccC-----cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 040261 206 RGFCYAN-----DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK-NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279 (343)
Q Consensus 206 ~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (343)
.+|.+.. +.+.|..++....+.| .|+....-..+..... ..+...|..+|..+.+.|. +....+..++....
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELG 373 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhC
Confidence 7776643 6788999999988887 4554433222222222 2467899999999999883 33322222222111
Q ss_pred --cCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 280 --LTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 280 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
...+...|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+...|
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2347889999999999887 3322222222233333 66666665555554443
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.51 Score=37.65 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=95.8
Q ss_pred HhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCh
Q 040261 63 CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV----FTYTTLINGLCRTGHT 138 (343)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 138 (343)
.-.|+..+|-..++++++. .+.|...+...=+++...|+...-...++++... ..++. ..-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456777777777777765 3446666666667777778877777777777654 12222 2223344456678888
Q ss_pred HHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCCChhhHHHHHHHHhccCcHH
Q 040261 139 IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE---NINPDVVTYTSLIRGFCYANDWN 215 (343)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 215 (343)
++|.+.-++..+.+ +.|..+..+....+...|+..++.+...+-... +.-.-.+-|-...-.+...+.++
T Consensus 192 ~dAEk~A~ralqiN-------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred hhHHHHHHhhccCC-------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 88888888877764 445666667777777788888888776654321 10011122333344556667888
Q ss_pred HHHHHHHHH
Q 040261 216 EAKCLFIEM 224 (343)
Q Consensus 216 ~a~~~~~~~ 224 (343)
.|+++|++-
T Consensus 265 ~aleIyD~e 273 (491)
T KOG2610|consen 265 KALEIYDRE 273 (491)
T ss_pred HHHHHHHHH
Confidence 888888653
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.88 E-value=0.31 Score=32.94 Aligned_cols=93 Identities=17% Similarity=0.052 Sum_probs=63.5
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHH---HHHHHHHHHhhc
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV---TFTSLIKGLCAE 100 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 100 (343)
..++...|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|++-+++.++..-..... .|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 455667788888888888776643 4466788888888888888888888888777643222222 233334456667
Q ss_pred CcHHHHHHHHHHHHhcC
Q 040261 101 SRIMEAAALFTKLRAFG 117 (343)
Q Consensus 101 ~~~~~a~~~~~~~~~~~ 117 (343)
|+-+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 77788877777776665
No 254
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.85 E-value=0.23 Score=36.24 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCcc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHH---
Q 040261 53 YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD--AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT--- 127 (343)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 127 (343)
..+..+...|.+.|+.+.|++.|.++......+. ...+-.+++.....+++..+...+.+....--.+.......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3677888889999999999999999887543332 45667788888888999888888777654321211111111
Q ss_pred HH--HHHHhcCChHHHHHHHHHHHccC
Q 040261 128 LI--NGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 128 l~--~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
.. -.+...+++..|-+.|-......
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 11 12345778888888877765443
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.82 E-value=0.55 Score=37.91 Aligned_cols=237 Identities=11% Similarity=0.036 Sum_probs=140.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc--CCCc---cHHHHHHHHHH
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS--CFTP---DAVTFTSLIKG 96 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~ 96 (343)
..-+....+..+|+..|.+-...- ...-..++..+..+.++.|.+++++..--.-++. ..+. --..|..+.++
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556778888888887755421 1112346777788888888887765442221110 0111 12345555666
Q ss_pred HhhcCcHHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHH
Q 040261 97 LCAESRIMEAAALFTKLRAF-GCKP---DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172 (343)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (343)
+-+..++.+++.+-..-... |..| .-.....+..+....+.++++++.|+...+.....+- ......++..+...
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHH
Confidence 66666666666665554432 2222 1123445667777788899999999887654321110 12234678899999
Q ss_pred HHhcCChHHHHHHHHHhhh----CCCCCChhhH-----HHHHHHHhccCcHHHHHHHHHHHHH----cCCCCC-HHHHHH
Q 040261 173 LCKEGFVDKAKELFLKMKD----ENINPDVVTY-----TSLIRGFCYANDWNEAKCLFIEMMD----QGVQPN-VVTFNV 238 (343)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ 238 (343)
|.+..|+++|.-+..+..+ .++..-..-| ..+.-++...|....|.+.-++..+ .|-.+. ......
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 9999999999877666533 2222111122 2334456677887777777766554 343322 344556
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 040261 239 IMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
+...|...|+.+.|..-|+.+..
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHH
Confidence 77888899999998888876543
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.76 E-value=0.36 Score=32.68 Aligned_cols=92 Identities=17% Similarity=0.131 Sum_probs=72.2
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhcCC
Q 040261 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA---SVYNTLMDGFCLTG 282 (343)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~ 282 (343)
-+....|+.+.|++.|.+.+.. .+-....||.-.+++.-.|+.++|+.-+++..+..-.... ..|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4667889999999999998876 3556888999999999999999999999998886322222 23444445677889
Q ss_pred chHHHHHHHHHHHhCC
Q 040261 283 RVNRAKELFVSMESNG 298 (343)
Q Consensus 283 ~~~~a~~~~~~~~~~~ 298 (343)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 9999999999998877
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.74 E-value=0.66 Score=35.60 Aligned_cols=187 Identities=16% Similarity=0.125 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcc
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRAFGC--KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 164 (343)
...|+.-+. -.+.|++++|.+.|+.+....+ +-...+...++.++.+.++++.|...+++.....+. .| ..
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-----~~-n~ 107 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-----HP-NA 107 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-----CC-Ch
Confidence 344444443 3477899999999999887632 123445666777888899999999999998887631 22 23
Q ss_pred hHHHHHHHHHh-------cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHH
Q 040261 165 TYSTITDGLCK-------EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237 (343)
Q Consensus 165 ~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (343)
.|...+.+.+. ..|...+...+..+. .++.-|-...-...|..-+..+... . ...=.
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~---L-A~~Em 171 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA---L-AGHEM 171 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH---H-HHHHH
Confidence 44444444431 122222222222221 1222222222222222222222111 0 00112
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 238 VIMNELCKNGKMDEASRLLELMIQIGVRP---DASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
.+.+.|.+.|.+..|..-++++++. .+- ....+-.+..+|...|-.++|.+.-.-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3556677778887777777777775 121 2234555666777777777777766655544
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=95.73 E-value=1.1 Score=37.83 Aligned_cols=81 Identities=9% Similarity=-0.078 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 70 PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149 (343)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (343)
+|.+..++..+.+ +.|+.....+..+....++++.|...|++....++. ...+|....-.+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4455555555544 225555555555555556666677777766665322 33344444444555666777777666655
Q ss_pred ccC
Q 040261 150 NGN 152 (343)
Q Consensus 150 ~~~ 152 (343)
+..
T Consensus 400 rLs 402 (458)
T PRK11906 400 QLE 402 (458)
T ss_pred ccC
Confidence 543
No 259
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.71 E-value=1 Score=37.61 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhH
Q 040261 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201 (343)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 201 (343)
..+|...++...+..-.+.|..+|-++.+.+- ..+++..+++++..++ .|+..-|..+|+--... .+.+..--
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-----~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~ 469 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-----VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYK 469 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-----CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHH
Confidence 34556666666677777777777777776652 3456667777776554 46677777777664433 12222223
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPN--VVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
+-.+..+...++-+.|..+|+...++ +..+ ...|..++..-..-|+...+..+=+++.+.
T Consensus 470 ~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 470 EKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 34455566677777777777755543 2222 456777777777777777777666666553
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.63 E-value=1.2 Score=37.79 Aligned_cols=165 Identities=11% Similarity=0.120 Sum_probs=86.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhc
Q 040261 22 ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY-TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100 (343)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (343)
.+|....+..+.+.-+++-.+..+ +.|+-. .|..|.. -......++.+++++..+.|-. .+. . .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~----~lg---~----s 237 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA----SLG---K----S 237 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH----hhc---h----h
Confidence 344444555566655555555555 234432 3332222 2234466777777777654310 110 0 0
Q ss_pred CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChH
Q 040261 101 SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180 (343)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (343)
...+..-..++........+-..+-..+..++-+.|+.++|.+.++++.+..+ ......+...|+.++...+.+.
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-----~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-----NLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-----ccchhhHHHHHHHHHHhcCCHH
Confidence 00000001112222222222233334566677788888888888888876541 1123446677888888888888
Q ss_pred HHHHHHHHhhhCCCCC-ChhhHHHHHH
Q 040261 181 KAKELFLKMKDENINP-DVVTYTSLIR 206 (343)
Q Consensus 181 ~a~~~~~~~~~~~~~~-~~~~~~~l~~ 206 (343)
++..++.+..+...+. -...|+..+-
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHH
Confidence 8888888875443222 2345665543
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=1.6 Score=39.54 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=109.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH--HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL--YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (343)
...-+..+.+..-++-|+.+-+. .+..++. ........-+.+.|++++|...|-+.+.. ++|. .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 44556677777777777777543 2222222 23333445566789999998887666543 2332 255556
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcC
Q 040261 98 CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177 (343)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (343)
....+..+--.+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .+. . ..-....+..+.+.+
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~-----~---~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGE-----W---FFDVETALEILRKSN 477 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccc-----e---eeeHHHHHHHHHHhC
Confidence 6677788888889999998877 66667789999999999988777766644 210 0 123455566666666
Q ss_pred ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHH
Q 040261 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224 (343)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (343)
-.++|..+-.+... .......++ -..+++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 66666655544332 222233333 2446677776666543
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.56 E-value=0.25 Score=38.68 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHh-----cCCCCCHHHHH
Q 040261 52 LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRA-----FGCKPDVFTYT 126 (343)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 126 (343)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 5678888888999999999999999998875 44788899999999999999999999888765 58888888877
Q ss_pred HHHHHH
Q 040261 127 TLINGL 132 (343)
Q Consensus 127 ~l~~~~ 132 (343)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 766663
No 263
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=1.7 Score=38.77 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=54.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH---cCCCccHHHHHHHHHHHh
Q 040261 22 ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR---SCFTPDAVTFTSLIKGLC 98 (343)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 98 (343)
.+++-+...+.+..|+++-..+...-... ..+|.....-+.+..+... .++++.+.+ ... .+...|..+.+-..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccc-hHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 35777788889999999887765322122 5677777777776643221 233333332 212 23455667777777
Q ss_pred hcCcHHHHHHHHHH
Q 040261 99 AESRIMEAAALFTK 112 (343)
Q Consensus 99 ~~~~~~~a~~~~~~ 112 (343)
..|+.+-|..+++.
T Consensus 519 ~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 519 QEGRFELARKLLEL 532 (829)
T ss_pred hcCcHHHHHHHHhc
Confidence 88988888877754
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.50 E-value=0.53 Score=32.87 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=35.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040261 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247 (343)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (343)
.++..+...+.......+++.+...+ ..+....+.++..|++.+ .......+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444444555555555444443 134444444554444332 1222222221 112222333455555555
Q ss_pred ChhHHHHHHHHH
Q 040261 248 KMDEASRLLELM 259 (343)
Q Consensus 248 ~~~~a~~~~~~~ 259 (343)
-++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=95.42 E-value=1.4 Score=37.17 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=104.6
Q ss_pred chH--HHHHHHHHhc-----CChHHHHHHHHHhhh-CCCCCC-hhhHHHHHHHHhc---------cCcHHHHHHHHHHHH
Q 040261 164 ITY--STITDGLCKE-----GFVDKAKELFLKMKD-ENINPD-VVTYTSLIRGFCY---------ANDWNEAKCLFIEMM 225 (343)
Q Consensus 164 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 225 (343)
..| ..++.+.... ...+.|..+|.+... +...|+ ...|..+..++.. .....+|.++.+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554442 235678888988872 223344 4445444443322 234567778888888
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHH-
Q 040261 226 DQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVF- 304 (343)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 304 (343)
+.+ +-|......+..+..-.++++.|..+|++....+ +-...+|........-.|+.++|.+.+++..+. .|...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~ 407 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRK 407 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhH
Confidence 875 5677888888887788889999999999999875 444566666666777899999999999997775 34332
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHH
Q 040261 305 --SYGILINGYCKNKEIEGALSLYS 327 (343)
Q Consensus 305 --~~~~l~~~~~~~~~~~~a~~~~~ 327 (343)
.....++.|..+ ..++|+++|-
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHh
Confidence 222233355554 4566766654
No 266
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.33 E-value=1.6 Score=37.23 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=117.5
Q ss_pred cCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHH
Q 040261 10 MHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89 (343)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (343)
-...|.+....-+++..+.++...+-...+..+|...| .+-..|..++.+|... ..++-..+++++.+..+. |++.
T Consensus 59 ~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~ 134 (711)
T COG1747 59 LSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVI 134 (711)
T ss_pred hhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHH
Confidence 33445667777788888888888888888888888865 5667788888888887 557778888888876543 4444
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcc
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFGCKP-----DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI 164 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 164 (343)
-..+...| ..++.+.+..+|.++...=++. -...|..+.... ..+.+..+.+...+....+ ...-..
T Consensus 135 ~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg-----~~~~~V 206 (711)
T COG1747 135 GRELADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG-----EGRGSV 206 (711)
T ss_pred HHHHHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc-----cchHHH
Confidence 44444444 4477788888887776542210 112344443321 3466666776666665443 223345
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH
Q 040261 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205 (343)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (343)
.+.-+-.-|....++++|++++..+.+.+-+ |...-..++
T Consensus 207 l~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i 246 (711)
T COG1747 207 LMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEII 246 (711)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHH
Confidence 5566667788888999999999877765422 444433443
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.28 E-value=0.68 Score=32.79 Aligned_cols=112 Identities=15% Similarity=0.074 Sum_probs=67.2
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch
Q 040261 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN-VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284 (343)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 284 (343)
..-.+.++.+++..++..+.-. .|...... .-...+...|++.+|..+|+++.+.. |....-..|+..|....+-
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 4446778899999999888775 55543333 23455678899999999999987653 4444445555555544443
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 040261 285 NRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324 (343)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 324 (343)
..-...-+++.+.+. |+.+ ..+++.+....+...|..
T Consensus 94 ~~Wr~~A~evle~~~--d~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 94 PSWRRYADEVLESGA--DPDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred hHHHHHHHHHHhcCC--ChHH-HHHHHHHHHhccccchhh
Confidence 344444555666542 3333 345555555555555444
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.27 E-value=0.056 Score=27.32 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 305 SYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46678888888888888888888855
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.19 E-value=0.78 Score=32.94 Aligned_cols=137 Identities=12% Similarity=0.140 Sum_probs=88.8
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
.+.++.+.+.+++|+...+..++..+.+.|++.... .+...++-+|.......+-.+. +....+.++--.|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 455666777889999999999999999999866544 4455566677665554443332 2334444444444332
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
= ...+..+++.+...|++-+|.++.+..... +......++.+-...+|..--..+++-...++
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 0 114556777889999999999998876332 22223456777778888777666666665543
No 270
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.19 E-value=0.77 Score=32.90 Aligned_cols=133 Identities=20% Similarity=0.204 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcc-h
Q 040261 88 VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF-TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI-T 165 (343)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~ 165 (343)
..|...+.. .+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.... .|... -
T Consensus 60 d~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~------~P~~~rd 132 (221)
T COG4649 60 DAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS------IPQIGRD 132 (221)
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC------CcchhhH
Confidence 334433332 34455566666666665554332111 112223344555666666666666555431 11111 1
Q ss_pred HHH--HHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 166 YST--ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 166 ~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
..- -...+...|.++......+.+...+-+.....-..|.-+-.+.|++..|...|..+...
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 111 11223455556666555555554443333344445555555666666666666655543
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.18 E-value=1.3 Score=35.48 Aligned_cols=136 Identities=13% Similarity=0.180 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhc
Q 040261 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCR--TG----HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176 (343)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (343)
+++.+.+++.|.+.|...+..++.+..-.... .. ....+..+++.|.+..+.. ..++...+..++.. ..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL---Ts~~D~~~a~lLA~--~~ 152 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL---TSPEDYPFAALLAM--TS 152 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---cCccchhHHHHHhc--cc
Confidence 45677888999999988777666554333333 22 3457888999998876432 23444555555444 34
Q ss_pred CCh----HHHHHHHHHhhhCCCCCC--hhhHHHHHHHHhccCc--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 177 GFV----DKAKELFLKMKDENINPD--VVTYTSLIRGFCYAND--WNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243 (343)
Q Consensus 177 ~~~----~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (343)
++. +.+..+|+.+.+.|+..+ ....+.++..+..... ...+..+++.+.+.|+++....|..+.-..
T Consensus 153 ~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 153 EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 443 455667777777665543 2334444443333222 347788888888888888877776554443
No 272
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.16 E-value=1.6 Score=36.49 Aligned_cols=145 Identities=14% Similarity=0.259 Sum_probs=105.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 040261 163 AITYSTITDGLCKEGFVDKAKELFLKMKDEN-INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTF-NVIM 240 (343)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 240 (343)
..+|...+....+..-.+.|..+|-+..+.+ +.+++..+++++..++ .|+...|..+|+--... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777888888888999999999998887 5677888888888765 57888899999876665 3444333 4566
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 040261 241 NELCKNGKMDEASRLLELMIQIGVRPD--ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313 (343)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (343)
..+...++-+.|..+|+..+.. +..+ ..+|..++.-=..-|+...+..+-+++.+. .|...+......-|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 7778889999999999966553 1222 457888888778889988888888877764 34444444344333
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.13 E-value=1.8 Score=36.79 Aligned_cols=78 Identities=10% Similarity=0.127 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCcc-HHHHHHHH
Q 040261 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIG-VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD-VFSYGILI 310 (343)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 310 (343)
..+=..+..++-+.|+.++|.+.++++.+.. ..-+..+...|+.++...+.+.++..++.+..+...+.+ ..+|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3333456677778899999999998887643 112345677788889999999999998888765432222 23455444
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.12 E-value=0.44 Score=34.83 Aligned_cols=98 Identities=14% Similarity=0.009 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD--LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
...+..+...|.+.|+.+.|++.|.++......+. ...+-.+++.....+++..+.....+....--.........-+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 45788999999999999999999999987654443 3467788899999999999998888876532111111111111
Q ss_pred -----HHHhhcCcHHHHHHHHHHHH
Q 040261 95 -----KGLCAESRIMEAAALFTKLR 114 (343)
Q Consensus 95 -----~~~~~~~~~~~a~~~~~~~~ 114 (343)
-.+...+++..|-+.|-...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 12334678888888776654
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.01 E-value=0.062 Score=27.15 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHh
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRL 43 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~ 43 (343)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666666666666666666663
No 276
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.01 E-value=2.4 Score=37.62 Aligned_cols=178 Identities=15% Similarity=0.056 Sum_probs=102.5
Q ss_pred cchHHHHHHHHHHcCCCccHHHHHHHHHH-----HhhcCcHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHhc
Q 040261 68 VSPGFVVLGRILRSCFTPDAVTFTSLIKG-----LCAESRIMEAAALFTKLRA-------FGCKPDVFTYTTLINGLCRT 135 (343)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 135 (343)
...|.++++...+.| +...-..+..+ +....+.+.|+.+++...+ .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356778888777765 22222222222 3355678888888888766 44 233455666666664
Q ss_pred C-----ChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh-cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 040261 136 G-----HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK-EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209 (343)
Q Consensus 136 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (343)
. +.+.|..++.+....+ .|+.......+..... ..+...|.++|......|.. ..+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~ 371 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYE 371 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHH
Confidence 3 5667888888887766 3333333333322222 24677888888888887742 22333333322
Q ss_pred ----ccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 040261 210 ----YANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263 (343)
Q Consensus 210 ----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 263 (343)
...+...|..++.+..+.| .|....-...+..+.. ++++.+...+..+.+.|
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2346788888888888887 3332222222333333 66777666666666654
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.98 E-value=0.91 Score=32.60 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=72.8
Q ss_pred HHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 040261 37 LSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
.+.++.+.+.+++|+...+..++..+.+.|++.. +..+++.++-+|.......+-.+. +....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455556667777888888888888888777554 334444444445444433332222 2223333333333322
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040261 117 GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191 (343)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (343)
=...+..++..+...|++-+|+++.+...... ......++.+..+.+|...-..+++-...
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----------~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----------SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----------cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11134456667777788888877776653321 22334556666666665555555554443
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.90 E-value=0.047 Score=27.19 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=19.1
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHhcCChhHHH
Q 040261 5 DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVL 37 (343)
Q Consensus 5 ~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 37 (343)
+...+..| .++.+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P--~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNP--NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCC--CCHHHHHHHHHHHHHCcCHHhhc
Confidence 33344444 36677777777777777776664
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=3 Score=37.90 Aligned_cols=217 Identities=13% Similarity=0.086 Sum_probs=137.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHh----HhCC----------C--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRL----NSIG----------L--FPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~----------~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (343)
+..+.+.++.++...+++--=.-+++.. ...+ + .........-+..+.+..-+..|+.+-+.
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~-- 359 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKS-- 359 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHh--
Confidence 4456777778887777754333333322 2222 0 01122344556666677777777666543
Q ss_pred HcCCCcc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 040261 80 RSCFTPD--AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV 157 (343)
Q Consensus 80 ~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 157 (343)
.+..++ ........+-+.+.|++++|...|-+.+.. +.| ..++.-|........-..+++.+.+.+
T Consensus 360 -~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~g----- 427 (933)
T KOG2114|consen 360 -QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKG----- 427 (933)
T ss_pred -cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcc-----
Confidence 222222 223444555667889999999988776643 232 235566677777788888899998887
Q ss_pred cccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHH
Q 040261 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN 237 (343)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (343)
-.+...-..|+.+|.+.++.++..+..+... .|.. ..-....+..+.+.+-.++|..+-..... +.....
T Consensus 428 --la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ 497 (933)
T KOG2114|consen 428 --LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLD 497 (933)
T ss_pred --cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHH
Confidence 3566777889999999999999888887665 3321 22355667777777888888776655432 233333
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q 040261 238 VIMNELCKNGKMDEASRLLELM 259 (343)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~ 259 (343)
. .+...+++++|.+++..+
T Consensus 498 i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 498 I---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred H---HHHHhcCHHHHHHHHhcC
Confidence 3 344678899999988765
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.80 E-value=1 Score=32.32 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=92.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHH-
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY-TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL- 93 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 93 (343)
+-..|..-+. +.+.+..++|+..|..+.+.|...-.. ..........+.|+...|...|+++-.....|-..-=..-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4445554444 457788999999999998876432221 2233344567889999999999999876444433211111
Q ss_pred --HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 94 --IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 94 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
.-.+...|.+++.....+-+...+-+.-...-..|.-+-.+.|++..|.++|.++....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 22356778899988888877665544344455667777889999999999999988754
No 281
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.63 E-value=1 Score=31.46 Aligned_cols=14 Identities=7% Similarity=0.003 Sum_probs=5.4
Q ss_pred CcHHHHHHHHHHHH
Q 040261 101 SRIMEAAALFTKLR 114 (343)
Q Consensus 101 ~~~~~a~~~~~~~~ 114 (343)
+.......+++.+.
T Consensus 21 ~~~~~l~~yLe~~~ 34 (140)
T smart00299 21 NLLEELIPYLESAL 34 (140)
T ss_pred CcHHHHHHHHHHHH
Confidence 33333333333333
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.59 E-value=1.9 Score=34.56 Aligned_cols=132 Identities=14% Similarity=0.186 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc--cC----cHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCC-
Q 040261 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCY--AN----DWNEAKCLFIEMMDQGV---QPNVVTFNVIMNELCKNGK- 248 (343)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 248 (343)
+++.+.+++.+.+.|+.-+..+|-+....... .. ....+..+++.|.+... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888888777666554333322 22 35678899999998732 2445556655443 3333
Q ss_pred ---hhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 040261 249 ---MDEASRLLELMIQIGVRPDA--SVYNTLMDGFCLTGR--VNRAKELFVSMESNGCMRDVFSYGILING 312 (343)
Q Consensus 249 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (343)
.+.++.+|+.+.+.|+..+. .....++..+..... ..++.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 35577888888887776543 333444433332222 45788899999999998888777665543
No 283
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.46 E-value=0.1 Score=25.78 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNS 45 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 45 (343)
.+|..+..++...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4566677777777777777777777665
No 284
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.42 E-value=1.7 Score=33.06 Aligned_cols=223 Identities=18% Similarity=0.068 Sum_probs=127.3
Q ss_pred CCcchHHHHHHHHHHcCCCc-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 040261 66 GRVSPGFVVLGRILRSCFTP-DAVTFTSLIKGLCAESRIMEAAALFTKLRAF-GCKPDVFTYTTLINGLCRTGHTIVALN 143 (343)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 143 (343)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555443221 2455666666677777777777777776642 223345556666666777777777777
Q ss_pred HHHHHHccCCCCCccccCCcchHHHHHH-HHHhcCChHHHHHHHHHhhhCCC--CCChhhHHHHHHHHhccCcHHHHHHH
Q 040261 144 LFEEMANGNGEFGVVCKPDAITYSTITD-GLCKEGFVDKAKELFLKMKDENI--NPDVVTYTSLIRGFCYANDWNEAKCL 220 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 220 (343)
.+........ .+......... .+...|+++.+...+.+...... ......+......+...++.+.+...
T Consensus 117 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 117 LLEKALALDP-------DPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHcCCC-------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 7777776541 11222333333 67777777777777777644211 01223333333334556677777777
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 221 FIEMMDQGVQP-NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 221 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
+....... .. ....+..+...+...++.+.+...+....... +.....+..+...+...+..+.+...+......
T Consensus 190 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 190 LEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77776652 22 34556666666667777777777777766653 112333333333444555677777666666654
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.40 E-value=1.7 Score=33.04 Aligned_cols=225 Identities=20% Similarity=0.142 Sum_probs=114.0
Q ss_pred CChhHHHHHHHHhHhCCCC-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc-CCCccHHHHHHHHHHHhhcCcHHHHHH
Q 040261 31 KHYDTVLSLFKRLNSIGLF-PDLYTYNILINCFCKMGRVSPGFVVLGRILRS-CFTPDAVTFTSLIKGLCAESRIMEAAA 108 (343)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (343)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444555555554443211 02345555556666666666666666665541 122344445555555555666666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHH
Q 040261 109 LFTKLRAFGCKPDVFTYTTLIN-GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFL 187 (343)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (343)
.+.........+ ......... .+...|+++.+...+.+.....+. .......+......+...++.+.+...+.
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPE----LNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 666666543332 111222222 566666777777766666442100 00122223333333455666666666666
Q ss_pred HhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 188 KMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN-VVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
.............+..+...+...++++.+...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66554211124555556666666666666666666666542 22 233333333333555566666666666554
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.36 E-value=0.064 Score=26.69 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhcCCchHHH
Q 040261 268 ASVYNTLMDGFCLTGRVNRA 287 (343)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a 287 (343)
...|..+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444333
No 287
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.19 E-value=1.8 Score=34.34 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=62.7
Q ss_pred CCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 040261 193 NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG---VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS 269 (343)
Q Consensus 193 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 269 (343)
|.+....+...++..-....+++.+...+-.+.... ..|+...+ ..++.+. .-++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444455555666655555666777777766665431 11222222 1223222 336667777777777777778888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 270 VYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
+++.+++.+.+.+++.+|.++...|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888877777777666543
No 288
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=4.3 Score=36.42 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=72.2
Q ss_pred CCCCCCHHHHHH-----HHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcH--HHHHHHHHHHHhcCC
Q 040261 46 IGLFPDLYTYNI-----LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI--MEAAALFTKLRAFGC 118 (343)
Q Consensus 46 ~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~ 118 (343)
.|++.+..-|.. ++.-+...+.+..|.++...+-..-.. ....|.....-+.+..+. +++++..++-.+...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 455544444433 344455566677777766655322111 145555555555554321 233333333222212
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040261 119 KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191 (343)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (343)
.....|..+..-....|+.+-|..+++.=...+.. ...-.+..-+...+.-+.+.|+.+....++-.+..
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~q--V~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQ--VPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccch--hHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 24456777777777788888888777642222110 00111233445555666677777777666655543
No 289
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.97 E-value=0.15 Score=25.10 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNS 45 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 45 (343)
..|..+..++.+.|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566667777777777777777777665
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.91 E-value=0.58 Score=30.05 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040261 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241 (343)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (343)
+..+-+..+....+.|++....+.+++|.+.+++..|.++++.+..+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445555666666667777777777777777777777777777666551 222225554443
No 291
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.90 E-value=0.69 Score=29.39 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 040261 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226 (343)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (343)
++.+-+..+....+.|++....+.+++|.+.+++..|.++++-+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444455555555556666666666666666666666666665543
No 292
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.86 E-value=3.5 Score=34.70 Aligned_cols=252 Identities=12% Similarity=0.097 Sum_probs=133.4
Q ss_pred hHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC----CHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 040261 3 IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFP----DLYTYNILINCFCKMGRVSPGFVVLGRI 78 (343)
Q Consensus 3 i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 78 (343)
+++...+....|...-+...+...+.+ +.+++..+-+.+....+.+ =..++..++....+.++...|.+.+.-+
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444445555554444445555555554 5566666555544322211 2346788888888999999998888877
Q ss_pred HHcCCCccHHHHHHH-------HHHHhh----cCcHHHHHHHHHHHHhcCCCCCHHHHHH---HHHHHHhcCC-hHHHHH
Q 040261 79 LRSCFTPDAVTFTSL-------IKGLCA----ESRIMEAAALFTKLRAFGCKPDVFTYTT---LINGLCRTGH-TIVALN 143 (343)
Q Consensus 79 ~~~~~~~~~~~~~~l-------~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~-~~~a~~ 143 (343)
... .|+...-..+ -+..+. ..+...-+.+|+.....++..- ....- -..-+.+.|. -++|++
T Consensus 325 ~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 325 KIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred Hhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHH
Confidence 654 3333322211 122221 1123344556666665533211 11112 2334555666 788999
Q ss_pred HHHHHHccCCCCCccccCCcchHHHHH----HHHHh---cCChHHHHHHHHHhhhCCCCCChhh----HHHHH--HHHhc
Q 040261 144 LFEEMANGNGEFGVVCKPDAITYSTIT----DGLCK---EGFVDKAKELFLKMKDENINPDVVT----YTSLI--RGFCY 210 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~--~~~~~ 210 (343)
+++.+.+-. +-|..+-+.+. ..|.. ......-+.+-+.+.+.|++|-... -|.+. ..+..
T Consensus 402 LLk~il~ft-------~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 402 LLKLILQFT-------NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred HHHHHHHhc-------cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 998887742 23333333222 12221 2223333444444555666553222 22222 23345
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 040261 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNT 273 (343)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (343)
.|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+ ||+..+++.
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 6777777655555544 4677777777777777777777777777664 666665554
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.85 E-value=1.5 Score=30.57 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=29.0
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFN-VIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
...++.+++..++..|.-. .|+..-.. .-...+...|++.+|.++|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3456666666666666553 33322221 1233455667777777777776654
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.81 E-value=6.3 Score=37.51 Aligned_cols=110 Identities=17% Similarity=0.282 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH
Q 040261 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV--TFNVIMNEL 243 (343)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~ 243 (343)
|.+....+.....+++|.-.|+..-+ ..-.+.+|...|+|.+|..+..++... -+.. +-..|..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 33444445556667777666655432 223456777788888888877766422 1221 124566777
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 040261 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (343)
...+++-+|-++..+.... |. ..+..+++...+++|.++.....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 7888888888887776542 21 22344566667777777665443
No 295
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.44 E-value=7.4 Score=37.10 Aligned_cols=84 Identities=13% Similarity=0.106 Sum_probs=50.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHH
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS--VYNTLMDGF 278 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~ 278 (343)
|.+....+.....+++|.-.|+..-+ ....+.+|..+|++.+|+.+..++... .+.. +-..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 33334444555666666666654322 123466777778888888777766321 1211 225567777
Q ss_pred hcCCchHHHHHHHHHHHh
Q 040261 279 CLTGRVNRAKELFVSMES 296 (343)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~ 296 (343)
..+++.-+|-++..+...
T Consensus 1010 ~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHcccchhHHHHHHHHhc
Confidence 788888888887776655
No 296
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.40 E-value=1.3 Score=28.47 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=39.1
Q ss_pred ChhhHHHHHHHHHhcCCh--hHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 16 PVCSFNILFGCLAKNKHY--DTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
+.+.|..--..+....+. -+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++-+...
T Consensus 7 t~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 7 TDEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp -HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334455544455444433 356666677777777777777777788888888888888777776643
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.23 E-value=2.2 Score=30.36 Aligned_cols=114 Identities=12% Similarity=0.044 Sum_probs=65.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHH-HHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTY-NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (343)
++..-.+.++.+++..++..+.-. .|..... ..-...+...|++.+|..+|+.+.... |.......|+..|....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 344445788999999999988763 3443322 223345678899999999999987653 34444445555554443
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 040261 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143 (343)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 143 (343)
+-..=...-+++.+.+..|+. ..+++.+....+...|..
T Consensus 92 ~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred CChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 323333334455655444333 234445544444444433
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.23 E-value=0.33 Score=23.85 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 305 SYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
+|..+...|...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4556666666666666666666666643
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.20 E-value=2.5 Score=31.07 Aligned_cols=91 Identities=10% Similarity=0.043 Sum_probs=47.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC
Q 040261 241 NELCKNGKMDEASRLLELMIQIGVRPD--ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318 (343)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (343)
..+...+++++|..-++.........+ ..+--.|.+.....|.+|+|...++.....+ ........-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcCc
Confidence 345556666666666665543211100 1112234445556666666666666655432 223333444555666666
Q ss_pred hHHHHHHHHHHHhCC
Q 040261 319 IEGALSLYSEMLSKG 333 (343)
Q Consensus 319 ~~~a~~~~~~~~~~~ 333 (343)
-++|..-|++.+..+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666554
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.87 E-value=0.4 Score=23.46 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 305 SYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.|..+...+...|++++|++.|++.+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455666666666666666666666643
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.82 E-value=5.5 Score=33.89 Aligned_cols=119 Identities=13% Similarity=0.025 Sum_probs=73.1
Q ss_pred cCcHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC
Q 040261 100 ESRIMEAA-ALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178 (343)
Q Consensus 100 ~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (343)
.|+.-.|- +++..++...-.|+.... ........|+++.+...+...... +.....+...+++...+.|+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-------~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-------IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-------hcCCchHHHHHHHhhhchhh
Confidence 35554443 344444444333443333 334466788888888877766554 23456677778888888888
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 040261 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG 228 (343)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (343)
++.|...-.-|....+. ++.............|-++++...|+++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888888777766543 34344333333445567788888888877654
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.65 E-value=1.9 Score=31.97 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=17.6
Q ss_pred CChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhcCCchHHH
Q 040261 247 GKMDEASRLLELMIQI---GVRPDASVYNTLMDGFCLTGRVNRA 287 (343)
Q Consensus 247 ~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 287 (343)
.|.+++..++.+..+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444332 1133444444444444444444443
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.61 E-value=5.8 Score=33.73 Aligned_cols=126 Identities=12% Similarity=0.035 Sum_probs=83.9
Q ss_pred HHHHHHhcCChhHHHH-HHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC
Q 040261 23 LFGCLAKNKHYDTVLS-LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (343)
-|..-...|+...|.+ ++..+....-.|+..... .......|+++.+.+.+...... +.....+...+++...+.|
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchh
Confidence 3444455677766654 444444433334444333 33456779999988887766543 2335567778888888999
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
++++|...-+.|....+. ++..........-..|-++++.-.|+++....
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999998887665 55555444444556777889999999887765
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.57 E-value=3.5 Score=32.85 Aligned_cols=102 Identities=18% Similarity=0.144 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhh
Q 040261 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVT 200 (343)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 200 (343)
...+...++..-....+++.+...+-++....... ..++. +-..+++.+. .-++++++.++..-...|+-||..+
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~---~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAW---YLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchh---hhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 33444444444444555666666665555432110 11111 1122222222 2355566666666666677777777
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
++.++..+.+.+++.+|..+.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777766666555544
No 305
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.38 E-value=1.3 Score=35.65 Aligned_cols=93 Identities=8% Similarity=-0.083 Sum_probs=65.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC
Q 040261 22 ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101 (343)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (343)
--..-|.++|.+++|+..|....... +-|..++..-..+|.+..++..|..-....+..+ ..-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 34567888999999999998877643 2388888888899999999988887777766542 112334444444444456
Q ss_pred cHHHHHHHHHHHHhc
Q 040261 102 RIMEAAALFTKLRAF 116 (343)
Q Consensus 102 ~~~~a~~~~~~~~~~ 116 (343)
...+|.+-++...+.
T Consensus 180 ~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL 194 (536)
T ss_pred hHHHHHHhHHHHHhh
Confidence 677777777776665
No 306
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.36 E-value=8.4 Score=34.96 Aligned_cols=252 Identities=9% Similarity=-0.029 Sum_probs=123.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040261 56 NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135 (343)
Q Consensus 56 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (343)
...+..+.+.+++......+. . .+.+...-.....+....|+.++|.+....+-..|.. .+..+..++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHc
Confidence 344455556666665554221 1 1334444455666777778877777766666555533 445666677666655
Q ss_pred CChHHHH--HHHHHHHccCCCCCccccCCcchHHHHHHHHHh------------cCChHHHHHHHHHhhhCCCCCChhhH
Q 040261 136 GHTIVAL--NLFEEMANGNGEFGVVCKPDAITYSTITDGLCK------------EGFVDKAKELFLKMKDENINPDVVTY 201 (343)
Q Consensus 136 ~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~ 201 (343)
|...... +-+..+...+ +...-..+...... ..+...+...+.. ++|+...-
T Consensus 177 g~lt~~d~w~R~~~al~~~---------~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~ 242 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAG---------NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTR 242 (644)
T ss_pred CCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhH
Confidence 5544322 1122222221 11122222221100 0111111111111 11222111
Q ss_pred HHHHHH--HhccCcHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040261 202 TSLIRG--FCYANDWNEAKCLFIEMMDQG-VQPN--VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276 (343)
Q Consensus 202 ~~l~~~--~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 276 (343)
..++.+ -....+.+.|..++....... ..+. ......+.......+...++...+...... ..+......-+.
T Consensus 243 ~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r 320 (644)
T PRK11619 243 QMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVR 320 (644)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHH
Confidence 111111 123445677888887764442 2222 122333333333332255566666554332 224444555555
Q ss_pred HHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 277 GFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
.....++++.+...+..|.... .-...-...+.+++...|+.++|...|+++.
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6667888888888887775432 2344455567777777888888888888764
No 307
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.36 E-value=0.37 Score=23.36 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=15.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 308 ILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 308 ~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.+..++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455566666777777777666654
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.14 E-value=2.6 Score=31.26 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=58.3
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCh
Q 040261 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ---GVQPNVVTFNVIMNELCKNGKM 249 (343)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 249 (343)
+.+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.+++..++.+..+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 566777777777665555666666655554 67889999999888765 3367899999999999999999
Q ss_pred hHHH
Q 040261 250 DEAS 253 (343)
Q Consensus 250 ~~a~ 253 (343)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.93 E-value=0.42 Score=24.73 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLN 44 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 44 (343)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356666666666666666666666654
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.82 E-value=0.57 Score=24.20 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 304 FSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 304 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777653
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.80 E-value=1.9 Score=37.52 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH
Q 040261 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203 (343)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (343)
.-+.+...+.+.|-.++|+++- +|+.- -.....+.|+.+.|.++..+.. +..-|..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~ 671 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQ 671 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHH
Confidence 3445666666777766666531 11111 1123445677777776665432 4556778
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 040261 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283 (343)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (343)
|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.| +.|. ..-+|...|+
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~-----AF~~~~l~g~ 736 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNL-----AFLAYFLSGD 736 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccch-----HHHHHHHcCC
Confidence 88888888888888877766543 3455666666777666666666655555 3332 2334556677
Q ss_pred hHHHHHHHHHH
Q 040261 284 VNRAKELFVSM 294 (343)
Q Consensus 284 ~~~a~~~~~~~ 294 (343)
++++.+++..-
T Consensus 737 ~~~C~~lLi~t 747 (794)
T KOG0276|consen 737 YEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhc
Confidence 77777776543
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.78 E-value=0.079 Score=37.22 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=51.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 040261 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283 (343)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (343)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666666777777777777776554555666777777777776666666666511 11222345566667777
Q ss_pred hHHHHHHHHHHH
Q 040261 284 VNRAKELFVSME 295 (343)
Q Consensus 284 ~~~a~~~~~~~~ 295 (343)
++++.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777777666543
No 313
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.67 E-value=3.4 Score=30.61 Aligned_cols=92 Identities=12% Similarity=0.009 Sum_probs=46.4
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (343)
..-+.+.|++++|..-|...+..-.+.. ...|..-..++.+.+.++.|+.-..+.++.++. ..........+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 4445556666666666666554321111 112333444555666666666666655554322 22223333445555
Q ss_pred cCcHHHHHHHHHHHHhc
Q 040261 100 ESRIMEAAALFTKLRAF 116 (343)
Q Consensus 100 ~~~~~~a~~~~~~~~~~ 116 (343)
...+++|+.-|..+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 56666666666666654
No 314
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.31 E-value=2.6 Score=26.92 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 32 HYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
+.-++.+-++.+....+.|++.+..+.+++|.+.+++..|.++++-++... ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445667777777777777888888888888888888888888887766331 11333454444
No 315
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.31 E-value=7.4 Score=32.16 Aligned_cols=65 Identities=14% Similarity=0.021 Sum_probs=43.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC---ChhhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 040261 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINP---DVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226 (343)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (343)
...++..++..+.+.|.++.|...+..+...+... .+...-.-+...-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777788888888888888888776643111 233344445555667777888888777776
No 316
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.26 E-value=9.6 Score=33.37 Aligned_cols=296 Identities=10% Similarity=0.007 Sum_probs=157.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHH-HhcCCcchHHHHHHHHHHc-CCC-ccHHHHHHHHHH
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCF-CKMGRVSPGFVVLGRILRS-CFT-PDAVTFTSLIKG 96 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~ 96 (343)
|......=.+.|..+.+..+|++.+. +++.+...|......+ ...|+.+.....|+..... |.. .+...|...+..
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 34444444567888888888888775 4566666676665443 3456666777777777653 211 245567777877
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHcc--CCCCC---------
Q 040261 97 LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR---------TGHTIVALNLFEEMANG--NGEFG--------- 156 (343)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~--~~~~~--------- 156 (343)
-...+++.....+++++++. ....++....-|.+ ....+++.++-...... .....
T Consensus 161 en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~ 236 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIG 236 (577)
T ss_pred HhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHH
Confidence 77788888888888888865 22222222222211 11223332222222210 00000
Q ss_pred --ccccCC---cchHHHHHH-------HHHhcCChHHHHHHHHHhhhC---CC----CCChhhHHHHHHHHhccCcHHHH
Q 040261 157 --VVCKPD---AITYSTITD-------GLCKEGFVDKAKELFLKMKDE---NI----NPDVVTYTSLIRGFCYANDWNEA 217 (343)
Q Consensus 157 --~~~~~~---~~~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a 217 (343)
....|. ....+.+.. ++............|+.-..+ .+ +++..+|...+..-...|+++.+
T Consensus 237 v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~ 316 (577)
T KOG1258|consen 237 VKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRV 316 (577)
T ss_pred HhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHH
Confidence 000000 011111111 111122222222333332222 11 22456677777777888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
.-++++..-- +.-=...|-..+.-....|+.+-|..++....+..++..+.+.-.-....-..|+++.|..+++.+.+.
T Consensus 317 ~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 317 FILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 8888877642 111233444445555555888888888887777654433333222222345568999999999998876
Q ss_pred CCCccHH-HHHHHHHHHHhcCChHHHH
Q 040261 298 GCMRDVF-SYGILINGYCKNKEIEGAL 323 (343)
Q Consensus 298 ~~~~~~~-~~~~l~~~~~~~~~~~~a~ 323 (343)
- |+.. .-..-+....+.|..+.+.
T Consensus 396 ~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 396 Y--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred C--CchhhhHHHHHhHHHHhcchhhhh
Confidence 3 4432 2223344455667777766
No 317
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.23 E-value=3.8 Score=32.08 Aligned_cols=88 Identities=11% Similarity=-0.049 Sum_probs=36.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 040261 58 LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC---- 133 (343)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 133 (343)
-|++++..+++.+++.+.-+..+.--+..+.+...-|-.|.+.+.+..+.++-.......-..+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3455555555555544433333221111223333344445555555555555444443321112223444333332
Q ss_pred -hcCChHHHHHHH
Q 040261 134 -RTGHTIVALNLF 145 (343)
Q Consensus 134 -~~~~~~~a~~~~ 145 (343)
=.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 245555555544
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.99 E-value=0.54 Score=25.02 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=17.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 309 LINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
+..+|...|+.+.|.+++++++..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667777777777777777777543
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.90 E-value=8.2 Score=31.91 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=48.7
Q ss_pred CChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQP---NVVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
....+|..++..+.+.|.++.|...+..+...+... .+...-.-+...-..|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678888888999999999999998887753211 2333444556666788889999988888773
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.75 E-value=0.14 Score=36.01 Aligned_cols=83 Identities=10% Similarity=0.102 Sum_probs=46.9
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCc
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (343)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45566666777777777777765554455666777777777776666666655511 11122335555555555
Q ss_pred HHHHHHHHHH
Q 040261 103 IMEAAALFTK 112 (343)
Q Consensus 103 ~~~a~~~~~~ 112 (343)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 321
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.60 E-value=14 Score=34.16 Aligned_cols=199 Identities=12% Similarity=0.047 Sum_probs=109.7
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCccccCCcc-------hHHHHH-HHHHhcCChHHHHHHHHHhhhC----CCCCChh
Q 040261 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI-------TYSTIT-DGLCKEGFVDKAKELFLKMKDE----NINPDVV 199 (343)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 199 (343)
.....++.+|..++.++...-+ .|+.. .++.+- ......|+++.|.++-+..... -..+...
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~------~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK------APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC------cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 4557789999999988876542 22211 233332 2334578889998887776543 2233456
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHH---HHHHH--HHHHHhCCChhHH--HHHHHHHHHc---CCC---C
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV---TFNVI--MNELCKNGKMDEA--SRLLELMIQI---GVR---P 266 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~~~~~~a--~~~~~~~~~~---~~~---~ 266 (343)
.+..+..+..-.|++++|..+.....+..-.-+.. .|..+ ...+...|....+ +..+...... ..+ +
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 67777788888999999999988776542122222 23322 2345566743332 2333332221 111 1
Q ss_pred CHHHHHHHHHHHhcC-CchHHHHHHHHHHHhCCCCccHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 040261 267 DASVYNTLMDGFCLT-GRVNRAKELFVSMESNGCMRDVFSY--GILINGYCKNKEIEGALSLYSEMLSKGIRP 336 (343)
Q Consensus 267 ~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 336 (343)
-..+...++.++.+. +...++..-++-.......|-.... ..|+......|+.++|...++++......+
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 223445555555542 1222333333322222222222222 256778889999999999998887654333
No 322
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.52 E-value=7.4 Score=30.80 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHhhh-CCCCCChhhHHHHHHHHhcc-C-cHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChhHHH
Q 040261 178 FVDKAKELFLKMKD-ENINPDVVTYTSLIRGFCYA-N-DWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEAS 253 (343)
Q Consensus 178 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 253 (343)
...+|+++|+.... ..+--|......+++..... + ....-.++.+.+... +-.++..+...++..+++.+++.+..
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663322 23444666677777666552 1 233333444444432 34677777788888888888888888
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHhcCCchHHHHHHHHH-----HHhCCCCccHHHHHHHHH
Q 040261 254 RLLELMIQI-GVRPDASVYNTLMDGFCLTGRVNRAKELFVS-----MESNGCMRDVFSYGILIN 311 (343)
Q Consensus 254 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~ 311 (343)
++++..... +...|...|..+++.....|+..-...+.++ +++.++..+...-..+-+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 888877665 4456777888888888888888777776653 234455555544444333
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.32 E-value=11 Score=32.50 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 040261 86 DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151 (343)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (343)
|.....+++..+.....+.-+..+..+|...| -+-..+..++++|... ..+.-..+|+++.+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 33444444555544444555555555554442 2334444555555444 334444455544443
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.30 E-value=1.1 Score=21.82 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 305 SYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
+|..+...|...|++++|.+.|++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667777888888888888888877653
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.20 E-value=12 Score=32.90 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 040261 86 DAVTFTSLIKGLCAESRIMEAAALFTKLR 114 (343)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (343)
+..-|..|.++....+++..|.+.|.+..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 33445555555555555555555554433
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.03 E-value=0.96 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHh
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNS 45 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 45 (343)
+|..+...+.+.|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566667777777777777777776654
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.00 E-value=0.58 Score=21.45 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFK 41 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~ 41 (343)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456666777777777776654
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.82 E-value=1.1 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=11.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHh
Q 040261 274 LMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
+..+|...|+.+.|..+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555444
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.56 E-value=5.6 Score=27.93 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=35.4
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHH-HHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 040261 27 LAKNKHYDTVLSLFKRLNSIGLFPDLYT-YNILINCFCKMGRVSPGFVVLGRILRSC 82 (343)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (343)
-...++++++..+++.|.-. .|+... -..-...+...|++.+|.++|+.+.+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34578888888888887653 233322 1222334567888899998888887754
No 330
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.45 E-value=7.6 Score=29.33 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCChhh
Q 040261 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN-INPDVVT 200 (343)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 200 (343)
+..||-+.--+...|+++.|.+.|+...+.++ ....+...-.-++.-.|++.-|.+-+-+.-+.+ -.|-...
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-------~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L 171 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-------TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL 171 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCC-------cchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHH
Confidence 45677777777788888888888888887652 112222222222334577777777665554442 1222222
Q ss_pred HHHHHHHHhccCcHHHHHHHH-HHHHHcCCCCCHHHHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCC-------CHHHH
Q 040261 201 YTSLIRGFCYANDWNEAKCLF-IEMMDQGVQPNVVTFNV-IMNELCKNGKMDEASRLLELMIQIGVRP-------DASVY 271 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~ 271 (343)
|-.+. -+.-++.+|..-+ ++.... |..-|.. ++..|. |... ...+++++.... .. =..+|
T Consensus 172 WLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL--gkiS-~e~l~~~~~a~a-~~n~~~Ae~LTEty 240 (297)
T COG4785 172 WLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL--GKIS-EETLMERLKADA-TDNTSLAEHLTETY 240 (297)
T ss_pred HHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH--hhcc-HHHHHHHHHhhc-cchHHHHHHHHHHH
Confidence 22222 2333555555433 333322 3333332 233332 2211 122333333221 11 13567
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHhCC
Q 040261 272 NTLMDGFCLTGRVNRAKELFVSMESNG 298 (343)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (343)
--+.+.+...|+.++|..+|+-....+
T Consensus 241 FYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 241 FYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 778888888899999999988777643
No 331
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.42 E-value=7.2 Score=29.02 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=68.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 040261 206 RGFCYANDWNEAKCLFIEMMDQGVQPNV-----VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280 (343)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (343)
.-+...|++++|..-|...++. +++.. ..|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 4567889999999999998886 23332 334444566778888999988888888876 3344444455567888
Q ss_pred CCchHHHHHHHHHHHhCCCCccHH
Q 040261 281 TGRVNRAKELFVSMESNGCMRDVF 304 (343)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~ 304 (343)
...+++|+.=+..+.+. .|...
T Consensus 181 ~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHh--CcchH
Confidence 88999999999998886 35443
No 332
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.19 E-value=7.6 Score=30.53 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=37.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHh-----
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC----- 98 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 98 (343)
|++++..+++.+++...-+--+.--+....+...-|-.|.+.+++..+.++-....+..-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455555555555544433222111111223334444445555555555555555544322222333444443332
Q ss_pred hcCcHHHHHHHH
Q 040261 99 AESRIMEAAALF 110 (343)
Q Consensus 99 ~~~~~~~a~~~~ 110 (343)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 235555555544
No 333
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.15 E-value=17 Score=32.95 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=17.2
Q ss_pred HHHHHHHHHH-----HHhcCChHHHHHHHHHHHhCCCCCC
Q 040261 303 VFSYGILING-----YCKNKEIEGALSLYSEMLSKGIRPT 337 (343)
Q Consensus 303 ~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~p~ 337 (343)
..++..|++. +...|++++|++.++++ ++-|.
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L---~liP~ 536 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKL---DLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT---T-S-S
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC
Confidence 3445544432 45678888887776665 55563
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.95 E-value=1.9 Score=34.70 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=57.0
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc
Q 040261 205 IRGFCYANDWNEAKCLFIEMMDQGVQP-NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR 283 (343)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (343)
..-|.+.|.+++|++.+...... .| +.+++..-..+|.+...+..|+.-...++..+ ..-...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 45678888899999888877665 44 77777777888888888887777666665543 1122233333333333455
Q ss_pred hHHHHHHHHHHHhC
Q 040261 284 VNRAKELFVSMESN 297 (343)
Q Consensus 284 ~~~a~~~~~~~~~~ 297 (343)
..+|.+-++...+.
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 55555555555553
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.85 E-value=0.78 Score=22.12 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHh
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNS 45 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 45 (343)
+-.+..++.+.|++++|.+.|+++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455555566666666666666554
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.48 E-value=6 Score=29.85 Aligned_cols=54 Identities=20% Similarity=0.126 Sum_probs=29.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 040261 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKM 189 (343)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (343)
+..+.+.+...+++...+.-.+.. +.+...-..+...++-.|+|++|..-++-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344455555566655555544442 344445555556666666666665555444
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.38 E-value=5.6 Score=30.00 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=54.6
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHH
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG--VRPDASVYNTLMD 276 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 276 (343)
|.+.-++.+.+.+...+++...+.-++.. +.+...-..+++.++-.|++++|..-++-..+.. ..+-..+|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 45556777888899999999988877763 3345555667889999999999998888776642 1233456666654
No 338
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.06 E-value=12 Score=29.75 Aligned_cols=66 Identities=6% Similarity=0.034 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 040261 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188 (343)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (343)
..++..+...++..++..+++.+-.++++....... ...|...|..++......|+..-...+..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~-----~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSV-----PGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCC-----CCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 455666667777777777777777777777665521 245666777777777777777666666554
No 339
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.44 E-value=15 Score=30.16 Aligned_cols=145 Identities=12% Similarity=0.009 Sum_probs=96.5
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHhcCC------------hhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 040261 4 FDYMLRMHPSPPPVCSFNILFGCLAKNKH------------YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71 (343)
Q Consensus 4 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 71 (343)
|+.-.+.+| .++.+|-.++..--..-. .+.-+.++++.++.+ +.+......++..+.+..+.+..
T Consensus 8 l~~~v~~~P--~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 8 LNRRVRENP--HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHhCc--ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 344444444 588999888865544322 355677889888775 46677888889999998888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhhc---CcHHHHHHHHHHHHhc------CC----CCCH-------HHHHHHHHH
Q 040261 72 FVVLGRILRSCFTPDAVTFTSLIKGLCAE---SRIMEAAALFTKLRAF------GC----KPDV-------FTYTTLING 131 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~------~~----~~~~-------~~~~~l~~~ 131 (343)
.+-++++...... +...|...++..... -.+.....+|.+..+. +. .+.. ..+..+...
T Consensus 85 ~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 85 AKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 8999999887433 677888888765442 2355555555554321 11 1111 123334455
Q ss_pred HHhcCChHHHHHHHHHHHccC
Q 040261 132 LCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~ 152 (343)
+...|..+.|..+++.+.+..
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHH
Confidence 667999999999999998866
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.41 E-value=9.3 Score=27.88 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040261 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133 (343)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (343)
+++|...|++..+. +|+...|+.-+....
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 45566666666655 678888887777663
No 341
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.37 E-value=26 Score=32.96 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCC---CCCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHcCCCccHHHHHH--
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNSIG---LFPDLYTYNILINCFCKMGRV--SPGFVVLGRILRSCFTPDAVTFTS-- 92 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 92 (343)
|..|+..|...|+.++|+++|.+..... -.--...+..+++-+.+.+.. +..+++-+...+.........+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 8999999999999999999999987622 111122344466655566655 566666666655432211111111
Q ss_pred ----------HHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 040261 93 ----------LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134 (343)
Q Consensus 93 ----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (343)
.+-.+......+-+..+++.+....-.++....+.++..|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122344556667788888888876656677777777777765
No 342
>PRK09687 putative lyase; Provisional
Probab=87.09 E-value=14 Score=29.56 Aligned_cols=235 Identities=10% Similarity=-0.022 Sum_probs=141.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcH----HHHHHHHHHHHhcCCCCCHHH
Q 040261 49 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI----MEAAALFTKLRAFGCKPDVFT 124 (343)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 124 (343)
.+|..+....+.++...|. ..+...+..+... +|...-...+.++.+.|+. .++...+..+... .++...
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3567777777777777775 3444444455443 3555555666677777653 4677777766443 356666
Q ss_pred HHHHHHHHHhcCCh-----HHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChh
Q 040261 125 YTTLINGLCRTGHT-----IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199 (343)
Q Consensus 125 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 199 (343)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+.+. ++..
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---------D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~ 174 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---------DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGD 174 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---------CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHH
Confidence 65666666655422 223333333332 23556666777777777764 566666666553 3555
Q ss_pred hHHHHHHHHhccC-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 200 TYTSLIRGFCYAN-DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278 (343)
Q Consensus 200 ~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (343)
.-...+.++.+.+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++
T Consensus 175 VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~AL 245 (280)
T PRK09687 175 VRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAA 245 (280)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHH
Confidence 5555566666543 23456666666653 34666677778888888874 4555555555543 2 234677788
Q ss_pred hcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 040261 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314 (343)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (343)
...|+. +|...+..+... .||...-...+.++.
T Consensus 246 g~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 888885 688888888764 357766666666554
No 343
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=86.42 E-value=3.2 Score=24.12 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 302 DVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
|..-...++.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344445555555555555555555543
No 344
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.27 E-value=7.2 Score=26.40 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=27.3
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
.+.+..+...++.|++......+++|.+.+++..|.++|+-+..+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334444455556666666666666666666666666666665544
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.25 E-value=15 Score=29.18 Aligned_cols=71 Identities=20% Similarity=0.151 Sum_probs=48.0
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHHHH
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ-----IGVRPDASVY 271 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 271 (343)
++......|..+|.+.+|..+.+..+..+ +.+...+-.++..+...||--.+.+-++++.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 35555677777788888888777777664 55666777777777778877777776666643 3555554443
No 346
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=85.89 E-value=26 Score=31.50 Aligned_cols=62 Identities=6% Similarity=0.011 Sum_probs=21.9
Q ss_pred ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 040261 197 DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMI 260 (343)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (343)
+...-.-++..|.+.|-.+.+..+.+.+-.+-. ...-|...+..+.+.|+...+..+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445555566666666666665554443311 12334444555555555555444444443
No 347
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.51 E-value=8.6 Score=26.05 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 040261 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
+-++.+...++.|++.+...-+++|.+.+|+..|.++|+.++.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555555443
No 348
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.58 E-value=18 Score=28.45 Aligned_cols=186 Identities=12% Similarity=0.112 Sum_probs=103.0
Q ss_pred cCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC---CC--CCChhhHHHHHHHHh
Q 040261 135 TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE---NI--NPDVVTYTSLIRGFC 209 (343)
Q Consensus 135 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~ 209 (343)
..++++|+.-|++..+..++-+ .-.-.+...++....+.+++++....+.++... .+ .-+..+.+.++..-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKg---eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKG---EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccc---hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 3466777777777766542110 011223445677778888888888877776431 11 124556677776666
Q ss_pred ccCcHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC----C-------CCHHHHHH
Q 040261 210 YANDWNEAKCLFIEMMDQ-----GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV----R-------PDASVYNT 273 (343)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-------~~~~~~~~ 273 (343)
...+.+-...+++.-.+. +-..--.|-..|...|...+.+.+..++++++.+.-- . .=..+|..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 666555554444433221 1011112334566777777888888888877765311 1 11345666
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhC-CCCccHHHHHHHHHH-----HHhcCChHHHHH
Q 040261 274 LMDGFCLTGRVNRAKELFVSMESN-GCMRDVFSYGILING-----YCKNKEIEGALS 324 (343)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~a~~ 324 (343)
-++.|..+.+-.+...++++.... ..-|.+.... +++- ..+.|++++|..
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 677777777777777777765421 1234444333 3332 345677777653
No 349
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.32 E-value=23 Score=29.63 Aligned_cols=166 Identities=11% Similarity=0.052 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcC--CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc---------CCCCCH
Q 040261 54 TYNILINCFCKMGRVSPGFVVLGRILRSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF---------GCKPDV 122 (343)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 122 (343)
.+.-+...|...|+++.|++.|.+....- .......|..+|..-.-.|+|.....+..+..+. .+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 56677788888899999999888855421 1223455666666667778888777777666554 122233
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHH-----HHHhhhCCCCCC
Q 040261 123 FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKEL-----FLKMKDENINPD 197 (343)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~ 197 (343)
..+..+...+.+ ++..|.+.|-.......++...+.|...+.-..+.+...-++-+--..+ |+...+ ..
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----l~ 305 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----LE 305 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----cC
Confidence 344444444433 6666666554443333222222333333333333444433333322222 222222 23
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
+.....+...| .+++..++++++++...
T Consensus 306 Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 306 PQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred hHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 34444444433 35677888887776543
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.32 E-value=6 Score=24.24 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=29.1
Q ss_pred cCCchHHHHHHHHHHHhCCCCcc--HHHHHHHHHHHHhcCChHHHHHH
Q 040261 280 LTGRVNRAKELFVSMESNGCMRD--VFSYGILINGYCKNKEIEGALSL 325 (343)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 325 (343)
...+.++|+..|....+.-..+. -.++..++.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777665432221 23556667777777777776654
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.28 E-value=2.8 Score=19.30 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 305 SYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
.|..+...+...|+++.|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 445566666667777777777766653
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.21 E-value=10 Score=24.57 Aligned_cols=81 Identities=12% Similarity=0.096 Sum_probs=49.4
Q ss_pred cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHH
Q 040261 30 NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAAL 109 (343)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 109 (343)
....++|..+-+.+...+- ....+-.+-+.++...|+++.|..+.+.. ..||...|..+... +.|..+.+..-
T Consensus 18 ~HcHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~r 90 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESR 90 (115)
T ss_pred chHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHH
Confidence 3456777777777765431 12222233344566778888887776655 36777777666543 55666666666
Q ss_pred HHHHHhcC
Q 040261 110 FTKLRAFG 117 (343)
Q Consensus 110 ~~~~~~~~ 117 (343)
+.+|...|
T Consensus 91 l~rla~sg 98 (115)
T TIGR02508 91 LNRLAASG 98 (115)
T ss_pred HHHHHhCC
Confidence 66666665
No 353
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.71 E-value=4.2 Score=35.45 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=65.4
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 040261 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321 (343)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (343)
.+...|+...|.+.+..+..............|.....+.|....|..++.+..... ...+.++..+.+++....+.+.
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHH
Confidence 334568888888888777654211122334556666677778888888887776654 4567788889999999999999
Q ss_pred HHHHHHHHHhC
Q 040261 322 ALSLYSEMLSK 332 (343)
Q Consensus 322 a~~~~~~~~~~ 332 (343)
|++.|++..+.
T Consensus 695 a~~~~~~a~~~ 705 (886)
T KOG4507|consen 695 ALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHhc
Confidence 99999998865
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.68 E-value=22 Score=28.19 Aligned_cols=132 Identities=12% Similarity=0.093 Sum_probs=61.4
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhCCChhHHHHHHHHHHH----cCCCCCHHHHHHHHH
Q 040261 208 FCYANDWNEAKCLFIEMMDQGVQPNV-------VTFNVIMNELCKNGKMDEASRLLELMIQ----IGVRPDASVYNTLMD 276 (343)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~ 276 (343)
..+.+++++|+..+.++...|+..+. .+...+...|...|++....+......+ ..-+....+...|+.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 34445555555555555555443332 2233345555555555544433322211 111223344455555
Q ss_pred HHhcC-CchHHHHHHHHHHHhCCCCccH-----HHHHHHHHHHHhcCChHHHHHHHHHH----HhCCCCCCcc
Q 040261 277 GFCLT-GRVNRAKELFVSMESNGCMRDV-----FSYGILINGYCKNKEIEGALSLYSEM----LSKGIRPTVV 339 (343)
Q Consensus 277 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~ 339 (343)
.+... ..++....++....+....-.. ..-.-++..+.+.|.+.+|+.+...+ .+.+-+|+.+
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 54433 2355555555544432111111 11234566778888888888665544 3334444443
No 355
>PRK09687 putative lyase; Provisional
Probab=82.29 E-value=24 Score=28.25 Aligned_cols=219 Identities=15% Similarity=0.099 Sum_probs=113.1
Q ss_pred ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHccCCCCCcccc
Q 040261 85 PDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT----IVALNLFEEMANGNGEFGVVCK 160 (343)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 160 (343)
+|.......+.++...|. .++...+..+... ++...-...+.++...|+. .++...+..+...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D-------- 102 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED-------- 102 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--------
Confidence 355555555566655554 3333334344332 3555555556666666653 35666666653332
Q ss_pred CCcchHHHHHHHHHhcCCh-----HHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHH
Q 040261 161 PDAITYSTITDGLCKEGFV-----DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT 235 (343)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (343)
++..+-...+.++...+.. ..+...+...... ++..+-...+.++.+.++ .++...+-.+.+. ++..+
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~V 175 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDV 175 (280)
T ss_pred CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHH
Confidence 4445555555555444321 2233333333322 345555566666666665 3455555555542 33334
Q ss_pred HHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 040261 236 FNVIMNELCKNG-KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC 314 (343)
Q Consensus 236 ~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (343)
-...+.++.+.+ +...+...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+ + .....+.++.
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg 246 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHH
Confidence 344444444432 23345555555543 44666666677777777764 4555555544432 2 2335667777
Q ss_pred hcCChHHHHHHHHHHHhC
Q 040261 315 KNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~ 332 (343)
..|+. +|+..+.++.+.
T Consensus 247 ~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred hcCCH-hHHHHHHHHHhh
Confidence 77774 577777777653
No 356
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.79 E-value=19 Score=26.76 Aligned_cols=93 Identities=10% Similarity=0.022 Sum_probs=43.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 040261 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208 (343)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (343)
...+...+++++|..-++.......+ -.....+-..|.+.....|.+++|+..++.....+.. ......-...+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~D----e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKD----ENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchh----HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 34455666666666666655532210 0000111222334455556666666666555443211 11222333455
Q ss_pred hccCcHHHHHHHHHHHHHc
Q 040261 209 CYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~ 227 (343)
...|+-++|..-|+..++.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 170 LAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHcCchHHHHHHHHHHHHc
Confidence 5556666666666655554
No 357
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.12 E-value=28 Score=28.26 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=73.8
Q ss_pred CCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH----cCCCCCHH
Q 040261 195 NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ----IGVRPDAS 269 (343)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ 269 (343)
..|...++.+..+ +....++..+..+...+. |-.--...+......|++.||.+.|.+.+.+..+ .|.+.|..
T Consensus 67 ~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 67 KLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred eccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 3455555555442 233344444555555443 2112234566677889999999999888876544 46666655
Q ss_pred HHHHHHH-HHhcCCchHHHHHHHHHHHhCCCCccH----HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 270 VYNTLMD-GFCLTGRVNRAKELFVSMESNGCMRDV----FSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 270 ~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
.+..-+- .|....-+.+-.+..+.+.+.|...+. .+|..+- |....++.+|-.+|-+..
T Consensus 145 f~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 145 FYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 4443222 333333345555556666666655543 3444333 344567888888876654
No 358
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.87 E-value=6.8 Score=26.78 Aligned_cols=60 Identities=15% Similarity=-0.008 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFP-DLYTYNILINCFCKMGRVSPGFVVLGRI 78 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 78 (343)
..-|-.+--.|++. ...+.++|..|...|+-. -+..|......+...|++++|.++|+.-
T Consensus 65 D~RylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 65 DERYLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp -HHHHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 33444444445543 339999999998877644 4557888889999999999999998763
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.62 E-value=34 Score=29.17 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=38.5
Q ss_pred HhcCCcchHHHHHHHHHHcCCCccHHH--HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCh
Q 040261 63 CKMGRVSPGFVVLGRILRSCFTPDAVT--FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF--TYTTLINGLCRTGHT 138 (343)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 138 (343)
+..|+.+ +++.+.+.|..|+... ....+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 4456644 4455556676665432 233444555666654 334445556544432 112334455567777
Q ss_pred HHHHHHHH
Q 040261 139 IVALNLFE 146 (343)
Q Consensus 139 ~~a~~~~~ 146 (343)
+.+..+++
T Consensus 82 ~~v~~Ll~ 89 (413)
T PHA02875 82 KAVEELLD 89 (413)
T ss_pred HHHHHHHH
Confidence 66555554
No 360
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.55 E-value=13 Score=23.38 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHH
Q 040261 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182 (343)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 182 (343)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .+ +..|..++.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----------~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----------EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----------CcHHHHHHHHHHHcCchhhh
Confidence 34455555555533 22222222222234466666666666665 33 44566666666666554444
No 361
>PRK10941 hypothetical protein; Provisional
Probab=79.38 E-value=30 Score=27.51 Aligned_cols=62 Identities=16% Similarity=0.058 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
.+.+-.+|.+.++++.|+++.+.+....+. ++.-+.--.-.|.+.|.+..|..=++...+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 445556788899999999999999987544 56667767778999999999999998887765
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.79 E-value=11 Score=23.20 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=17.2
Q ss_pred cCcHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChhHHH
Q 040261 211 ANDWNEAKCLFIEMMDQGVQPN--VVTFNVIMNELCKNGKMDEAS 253 (343)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~ 253 (343)
..+.++|+..|...++.-..+. -.++..++.+++.-|++++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444321111 123334444444444444433
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.51 E-value=31 Score=27.20 Aligned_cols=187 Identities=13% Similarity=0.123 Sum_probs=99.5
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhc
Q 040261 100 ESRIMEAAALFTKLRAFGCKPDV---FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176 (343)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (343)
....++|+.-|++..+....-.. .+...++..+.+.+++++....+.++..--..- ..-.-+..+.++++...+..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA-VTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA-VTRNYSEKSINSILDYISTS 118 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHhhh
Confidence 34567777777776654322222 234456677777777777777766654321000 00012334566666666555
Q ss_pred CChHHHHHHHHHhhh----C-CCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCC----C-------CCHHHHHHHH
Q 040261 177 GFVDKAKELFLKMKD----E-NINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV----Q-------PNVVTFNVIM 240 (343)
Q Consensus 177 ~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-------~~~~~~~~l~ 240 (343)
.+.+.....++.-.+ . +-..=-.|-+-+...|...+.+.....+++++...-- . --...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 555554444443211 1 1011122334566677777888888888877764310 1 1134566667
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHH-----hcCCchHHHH
Q 040261 241 NELCKNGKMDEASRLLELMIQIGV-RPDASVYNTLMDGF-----CLTGRVNRAK 288 (343)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~-----~~~~~~~~a~ 288 (343)
+.|....+-.+...+++....... -|.+... .+++-| .+.|++++|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHH
Confidence 788888888888888877655321 2333332 233333 3456666654
No 364
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=77.82 E-value=9 Score=22.24 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHc
Q 040261 125 YTTLINGLCRTGHTIVALNLFEEMAN 150 (343)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (343)
--.++.++...|++++|.++++.+..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455666666666666666655543
No 365
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=77.81 E-value=5.5 Score=31.65 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCC
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNSIGLF 49 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 49 (343)
|+.-|....+.||+++|+.++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445566666666666666666666655544
No 366
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=77.08 E-value=45 Score=28.35 Aligned_cols=187 Identities=14% Similarity=0.181 Sum_probs=102.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCCHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHcCCCccH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSP-----GFVVLGRILRSCFTPDA 87 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~ 87 (343)
.....|+.+.+.--++.-.+...++.+.|.... -.|-..-..+++..||+..+.+- -+.+++.+...+++ -.
T Consensus 53 d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~lp-rs 131 (669)
T KOG3636|consen 53 NPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNLP-RS 131 (669)
T ss_pred CchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcCC-cc
Confidence 334455555444333333444555555553211 12222345677788888776542 24455555544332 33
Q ss_pred HHHHHH---HHHHhh-----cCcHHHHHHHH---------HHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 040261 88 VTFTSL---IKGLCA-----ESRIMEAAALF---------TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150 (343)
Q Consensus 88 ~~~~~l---~~~~~~-----~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (343)
..||.. ..-|.- .|+.-...+++ ..+....+.||..+.+-+...++..-..+....+|+-..+
T Consensus 132 d~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~q 211 (669)
T KOG3636|consen 132 DEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQ 211 (669)
T ss_pred hhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344432 222322 23322222222 1223345789999988888888888888999999999888
Q ss_pred cCCCCCccccCCcchHHHHHHH--------HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 040261 151 GNGEFGVVCKPDAITYSTITDG--------LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209 (343)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (343)
.. .|-...+.+++-. -.+...-++++++++.|...--.-|..-+-.+...|+
T Consensus 212 qa-------DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 212 QA-------DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred cC-------CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence 76 3433333333321 1245567889999998876532335555666666554
No 367
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.95 E-value=21 Score=26.56 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 230 QPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.41 E-value=24 Score=24.84 Aligned_cols=99 Identities=16% Similarity=0.090 Sum_probs=69.3
Q ss_pred hHhCCCCCCHH--HHHHHHHHHHhcCCcchHHHHHHHHHHcC-----CCccHHHHHHHHHHHhhcCc-HHHHHHHHHHHH
Q 040261 43 LNSIGLFPDLY--TYNILINCFCKMGRVSPGFVVLGRILRSC-----FTPDAVTFTSLIKGLCAESR-IMEAAALFTKLR 114 (343)
Q Consensus 43 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 114 (343)
|.+.+..++.. ..+.++.-....+++.-...+++.+.... -..+...|+.++.+..+... ---+..+|.-+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 44444455543 35667777777778887777777774321 12355678999999877666 456778888888
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHH
Q 040261 115 AFGCKPDVFTYTTLINGLCRTGHTIVA 141 (343)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~~~~~a 141 (343)
+.+.++++.-|..++.++.+....+..
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCCCcch
Confidence 888899999999999988876544443
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.41 E-value=20 Score=26.73 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=36.3
Q ss_pred hCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 245 KNGKMDEASRLLELMIQI-GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
...+.+......+.+.+. ...|++.++..++..+...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444333333221 23688889999899999999999999988888775
No 370
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.80 E-value=14 Score=33.07 Aligned_cols=58 Identities=10% Similarity=-0.006 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM 148 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 148 (343)
.-..++..|.+.|-.+.+.++.+.+-..-. ...-|..-+.-+.+.|+...+..+.+.+
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444444443332211 1223334444444445444444444333
No 371
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.42 E-value=26 Score=24.69 Aligned_cols=82 Identities=13% Similarity=0.271 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCC-----CCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHHcCCCccHHHHHH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGL-----FPDLYTYNILINCFCKMGR-VSPGFVVLGRILRSCFTPDAVTFTS 92 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (343)
..|.++......+++.-.+.+++.+..... ..+...|+.++.+.++..- --.+..+|..+.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 467777777888899999999888754211 2345578999999877665 4457788999988788999999999
Q ss_pred HHHHHhhc
Q 040261 93 LIKGLCAE 100 (343)
Q Consensus 93 l~~~~~~~ 100 (343)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99998765
No 372
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.65 E-value=46 Score=27.31 Aligned_cols=119 Identities=10% Similarity=0.023 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc---cCcH
Q 040261 138 TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY---ANDW 214 (343)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~ 214 (343)
.+.-+.+++++.+.. +.+......++..+.+..+.+...+.++++.... +-+...|...+..... .-.+
T Consensus 47 ~E~klsilerAL~~n-------p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v 118 (321)
T PF08424_consen 47 AERKLSILERALKHN-------PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTV 118 (321)
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcH
Confidence 345567788877764 4567778888899999999999999999988864 2356777777665443 2346
Q ss_pred HHHHHHHHHHHHc------CC----CCCH-------HHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 040261 215 NEAKCLFIEMMDQ------GV----QPNV-------VTFNVIMNELCKNGKMDEASRLLELMIQIGV 264 (343)
Q Consensus 215 ~~a~~~~~~~~~~------~~----~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 264 (343)
+....+|.+..+. +. .+.. ..+..+.....+.|..+.|..+++.+.+.++
T Consensus 119 ~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 119 SDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6666666554432 11 0111 1223333445678999999999999988765
No 373
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.51 E-value=69 Score=29.23 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=37.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh---
Q 040261 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQPNVVTFNVIMNELCK--- 245 (343)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 245 (343)
...+.-.|+++.|.+.+-. ..+...+...+...+..|.-.+-..... ..+.... -.|..--+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455567889999888876 1222345555555554443322222211 2222111 01112456677777765
Q ss_pred CCChhHHHHHHHHHHHc
Q 040261 246 NGKMDEASRLLELMIQI 262 (343)
Q Consensus 246 ~~~~~~a~~~~~~~~~~ 262 (343)
..++..|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 34666777776655543
No 374
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.40 E-value=3.1 Score=33.55 Aligned_cols=95 Identities=13% Similarity=0.022 Sum_probs=62.5
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHH
Q 040261 28 AKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA 107 (343)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 107 (343)
...|.++.|++.|...+..+ ++....|..-.+++.+.++...|++=+......+.. +..-|-.--.+-.-.|+|++|-
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 35677888888888877765 456667777777788888888888877777665322 1222333333334457888888
Q ss_pred HHHHHHHhcCCCCCHHH
Q 040261 108 ALFTKLRAFGCKPDVFT 124 (343)
Q Consensus 108 ~~~~~~~~~~~~~~~~~ 124 (343)
+.+....+.++.+....
T Consensus 203 ~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHHhccccHHHHH
Confidence 88888877766554443
No 375
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.10 E-value=12 Score=20.33 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=21.1
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 040261 27 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILIN 60 (343)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 60 (343)
..+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666677777766666666666655543
No 376
>PRK10941 hypothetical protein; Provisional
Probab=72.99 E-value=46 Score=26.49 Aligned_cols=77 Identities=8% Similarity=-0.092 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 040261 55 YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG-CKPDVFTYTTLINGL 132 (343)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 132 (343)
.+.+-.++.+.++++.|+.+.+.+....+ .++.-+.-..-.|.+.|.+..|..-++...+.. -.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34455667777888888888888777642 245556666666777788888877777776553 234444444444443
No 377
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.91 E-value=57 Score=27.57 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=28.2
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCChh--hHHHHHHHHh--ccCcHHHHHHHHHHHHHc
Q 040261 172 GLCKEGFVDKAKELFLKMKDENINPDVV--TYTSLIRGFC--YANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 227 (343)
.+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344566677777777666665 333333 2233333332 234556666666655543
No 378
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=72.64 E-value=4.9 Score=27.52 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=25.6
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 040261 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208 (343)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (343)
..+.|.-..|..+|++|.+.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457777889999999999988765 77777653
No 379
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=72.18 E-value=32 Score=24.29 Aligned_cols=58 Identities=12% Similarity=-0.023 Sum_probs=25.6
Q ss_pred HhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhc
Q 040261 42 RLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100 (343)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (343)
.+.+.|++++. --..++..+.+.++.-.|.++++.+.+.++..+..|....++.+...
T Consensus 11 ~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 11 RLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 33444444332 22334444444444455555555555554444433333333333333
No 380
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.89 E-value=24 Score=22.90 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 040261 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293 (343)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (343)
.++|..+-+.+...+-. ...+-.+-+..+...|++++|..+.+.. .-||...|.+|.. .+.|-.+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45555555555443211 1111112233455667777776666554 2566666655533 455666666666666
Q ss_pred HHhCC
Q 040261 294 MESNG 298 (343)
Q Consensus 294 ~~~~~ 298 (343)
+...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66554
No 381
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.66 E-value=37 Score=24.93 Aligned_cols=12 Identities=8% Similarity=-0.031 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHh
Q 040261 234 VTFNVIMNELCK 245 (343)
Q Consensus 234 ~~~~~l~~~~~~ 245 (343)
.++..+..++..
T Consensus 70 dAlw~lGnA~ts 81 (186)
T PF06552_consen 70 DALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444455555443
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.23 E-value=77 Score=28.35 Aligned_cols=125 Identities=14% Similarity=0.051 Sum_probs=79.7
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
+..++..|.. ...|-...+|...-.+...|+...|...+.........-..+..-.|.+...+.|....|-.++.....
T Consensus 592 ~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 592 GSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 3334433333 234455555555555566788888888887766442222233445566777777888888888877776
Q ss_pred cCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHH
Q 040261 262 IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309 (343)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 309 (343)
.. ...+.++-.+.+++....+++.|++.|+...+.. +.++..-+.|
T Consensus 671 ~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l 716 (886)
T KOG4507|consen 671 IN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSL 716 (886)
T ss_pred hc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHH
Confidence 54 3445677778888888899999999998887753 2334443433
No 383
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.61 E-value=12 Score=31.98 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 040261 21 NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY-TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99 (343)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (343)
..-+..+.+.+.++.|+.++.+.++.. ||-. .|..-..++.+.+++..|+.=+.++++..+. -...|..-..++.+
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMA 84 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHh
Confidence 344556677788888888888888743 5444 3444447788888888888777777765411 23344444455555
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040261 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133 (343)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (343)
.+.+.+|+..|+..... .|+..-....+.-|-
T Consensus 85 l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 66677777777776654 566666665555443
No 384
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.51 E-value=54 Score=26.31 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 269 SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
.+++.....|..+|.+.+|.++.++..... +.+...+-.++..+...||--.+.+-++++.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345566677788888888888888777653 4466677777778888888666666666553
No 385
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.33 E-value=41 Score=24.82 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCCCC--HHHH-----HHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 214 WNEAKCLFIEMMDQGVQPN--VVTF-----NVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
.+.|+.+|+.+.+.-..|. .... ...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5677777777766532221 1111 1223456677777777777776665
No 386
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.25 E-value=34 Score=23.80 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 231 PNVVTFNVIMNELCKNGK---MDEASRLLELMIQIGVRPD--ASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
++..+--.+..++.+..+ ..+.+.+++.+.+.. +|+ ....--|.-++.+.++++++.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333333334444444332 334455555555421 221 112222333555556666666666555553
No 387
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=70.11 E-value=14 Score=29.60 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=31.4
Q ss_pred ccH-HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 040261 85 PDA-VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126 (343)
Q Consensus 85 ~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (343)
|+. ..|+..|....+.||+++|++++++..+.|..--..+|.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 443 356688888888999999999999998888764444443
No 388
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=70.08 E-value=36 Score=24.03 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 040261 220 LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282 (343)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (343)
+.+.+.+.|++++..-. .++..+...++.-.|..+++.+.+.+...+..|.-..++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444455555554322 345555555555666666666666554444443333344444444
No 389
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.87 E-value=1.6e+02 Score=31.50 Aligned_cols=62 Identities=11% Similarity=-0.053 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
..+|-...+.....|.++.|...+-.+.+.+ . +..+--.++...+.|+...|..+++...+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4677788888888999999998887777765 3 345666778889999999999999988754
No 390
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=69.67 E-value=82 Score=28.04 Aligned_cols=279 Identities=15% Similarity=0.032 Sum_probs=148.9
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHhHhC-CCC-CCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLA-KNKHYDTVLSLFKRLNSI-GLF-PDLYTYNILINCFCKMGRVSPGFVVLGRI 78 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 78 (343)
.||++-...-| .++..|......+. ..|+.+.....|+..+.. |.. .+...|...+.--...+++.....+++++
T Consensus 100 ~Vfergv~aip--~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRi 177 (577)
T KOG1258|consen 100 KVFERGVQAIP--LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERI 177 (577)
T ss_pred HHHHHHHHhhh--hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 45666555433 57777777665554 467888888888887753 322 24457788887778888899999999998
Q ss_pred HHcCCCccHHHHHHHHHHH---hhc------CcHHHHHHHHHHHHhc---------------C----CCCCH---HHHHH
Q 040261 79 LRSCFTPDAVTFTSLIKGL---CAE------SRIMEAAALFTKLRAF---------------G----CKPDV---FTYTT 127 (343)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~---~~~------~~~~~a~~~~~~~~~~---------------~----~~~~~---~~~~~ 127 (343)
++.- ..-++....-| .+. ...+++.++-...... + ..|.. ...+.
T Consensus 178 leiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~ 253 (577)
T KOG1258|consen 178 LEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTI 253 (577)
T ss_pred Hhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHH
Confidence 8641 11222222111 111 1223333222222110 0 00000 01111
Q ss_pred HHH-------HHHhcCChHHHHHHHHHHHccCCC-CCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChh
Q 040261 128 LIN-------GLCRTGHTIVALNLFEEMANGNGE-FGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVV 199 (343)
Q Consensus 128 l~~-------~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 199 (343)
+.. ++............++......-. ..+..+++..+|...+..-.+.|+.+.+.-.|+...-. ...-..
T Consensus 254 l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~e 332 (577)
T KOG1258|consen 254 LKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDE 332 (577)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHH
Confidence 111 111112222222233333222110 00112234567888888889999999999999887542 011233
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA-SVYNTLMDGF 278 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 278 (343)
.|-..+.-....|+.+-|..++....+-.++-.+.+--.-.......|+...|..+++.+.+.- |+. ..-..-+...
T Consensus 333 fWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e 410 (577)
T KOG1258|consen 333 FWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWE 410 (577)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHH
Confidence 3444444444558888888888777665433222222222223345689999999999998763 442 2223334455
Q ss_pred hcCCchHHHHH
Q 040261 279 CLTGRVNRAKE 289 (343)
Q Consensus 279 ~~~~~~~~a~~ 289 (343)
.+.|+.+.+..
T Consensus 411 ~r~~~~~~~~~ 421 (577)
T KOG1258|consen 411 RRKGNLEDANY 421 (577)
T ss_pred HHhcchhhhhH
Confidence 67788887773
No 391
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=69.39 E-value=46 Score=30.09 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=58.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCChhH------HHHHHHHHHHcCCCCCHHHHHHH
Q 040261 203 SLIRGFCYANDWNEAKCLFIEMMDQ--GVQPNVVTFNVIMNELCKNGKMDE------ASRLLELMIQIGVRPDASVYNTL 274 (343)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 274 (343)
.++.+|..+|++..+..+++.+... |-+.-...+|..++...+.|.++- |...++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999988865 223335678888888888887653 333333332 45577888888
Q ss_pred HHHHhcCCchHHHHHHHHHHH
Q 040261 275 MDGFCLTGRVNRAKELFVSME 295 (343)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~ 295 (343)
+++-...-.-....-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776554333333334444444
No 392
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=69.06 E-value=14 Score=21.71 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 040261 54 TYNILINCFCKMGRVSPGFVVLGRILRSC 82 (343)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (343)
.++.++..+++..-.+.++..+.+..+.|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444433
No 393
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.41 E-value=21 Score=30.49 Aligned_cols=56 Identities=9% Similarity=0.036 Sum_probs=23.3
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (343)
..++.+.+++..|+.=+..+++.. +--...|..-..++...+.+.+|+..|+....
T Consensus 45 a~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 45 ALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKALLDLEKVKK 100 (476)
T ss_pred hhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHHHHHHHhhh
Confidence 344444455555544444444432 11122333333344444444444444444433
No 394
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=67.94 E-value=14 Score=25.27 Aligned_cols=44 Identities=25% Similarity=0.191 Sum_probs=34.7
Q ss_pred hHHHHHHHHhHhCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHH
Q 040261 34 DTVLSLFKRLNSIGLFPDL-YTYNILINCFCKMGRVSPGFVVLGR 77 (343)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 77 (343)
++..++|..|.+.|+-... ..|......+-..|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 5578899999888765443 4577778888899999999999863
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.93 E-value=18 Score=19.68 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=11.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 040261 246 NGKMDEASRLLELMIQIGVRPDASVYNT 273 (343)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (343)
.|-..++..++++|.+.|+..+...+..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 3333344444444444444444333333
No 396
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.84 E-value=1.9e+02 Score=31.09 Aligned_cols=294 Identities=13% Similarity=0.086 Sum_probs=148.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 040261 22 ILFGCLAKNKHYDTVLSLFKRLNSIGLF--PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99 (343)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (343)
.+..+-.+++.+.+|...++.-.....+ .....|..+...|...++++...-+...-.. +...+. -+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 4455666788899999998883111111 1223445555589999998887766654111 222233 3333456
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHH-HHHHHHhcCC
Q 040261 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST-ITDGLCKEGF 178 (343)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 178 (343)
.|++..|...|+++.+.+.+ ...+++.++......|.+.......+-..... .+....++. -+.+.-+.++
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-------se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-------SEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-------CHHHHHHHHHHHHHHhhhcc
Confidence 79999999999999987432 35567766666666677666665555444432 111222222 2233344555
Q ss_pred hHHHHHHHH-------------H-hhhCCCCCCh-hhHHHH----------HHHHhccCcHHHHHHHHHHHH--------
Q 040261 179 VDKAKELFL-------------K-MKDENINPDV-VTYTSL----------IRGFCYANDWNEAKCLFIEMM-------- 225 (343)
Q Consensus 179 ~~~a~~~~~-------------~-~~~~~~~~~~-~~~~~l----------~~~~~~~~~~~~a~~~~~~~~-------- 225 (343)
++.....+. . +.... .-|. .+++.+ +.++...|.+..+.+++-.+.
T Consensus 1534 wD~~e~~l~~~n~e~w~~~~~g~~ll~~~-~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1534 WDLLESYLSDRNIEYWSVESIGKLLLRNK-KKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhhhhhhhhcccccchhHHHHHHHHHhhc-ccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 554444432 0 00000 0011 111110 112222222222222221111
Q ss_pred -H--cCCCCCHH------HHHHHHHHHHhCCChhHHHHHH-HHHHHcCCC-----CCHHHHHHHHHHHhcCCchHHHHHH
Q 040261 226 -D--QGVQPNVV------TFNVIMNELCKNGKMDEASRLL-ELMIQIGVR-----PDASVYNTLMDGFCLTGRVNRAKEL 290 (343)
Q Consensus 226 -~--~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (343)
+ .++.++.. -|..-+..-....+..+-+--+ +.+...... --..+|....+....+|.++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 0 01122111 1111111100001111111111 111111112 2256788888888889999999988
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 291 FVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
+-...+.+ -+..+.-.+.-....|+...|+.++++.+...
T Consensus 1693 ll~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 77776654 34455667777889999999999999988653
No 397
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.80 E-value=9.2 Score=26.26 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=9.7
Q ss_pred CChhHHHHHHHHHHHcCCCCC
Q 040261 247 GKMDEASRLLELMIQIGVRPD 267 (343)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~ 267 (343)
|.-..|-++|++|.+.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 334444455555555544443
No 398
>PRK12798 chemotaxis protein; Reviewed
Probab=66.36 E-value=82 Score=26.79 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHc
Q 040261 101 SRIMEAAALFTKLRAFGCKPDVFTYTTLINGL-CRTGHTIVALNLFEEMAN 150 (343)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~ 150 (343)
|+..++.+.+..+.....++....+..|+.+- ....+...|+++|+...-
T Consensus 126 Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL 176 (421)
T PRK12798 126 GRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL 176 (421)
T ss_pred CCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 55555555555554444444444444444332 223345555555555543
No 399
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=66.14 E-value=30 Score=21.69 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=26.1
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 040261 38 SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (343)
++|+-....|+..|..+|..++..+.-.=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 666666666777777777766666555445555555555554
No 400
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.08 E-value=37 Score=26.59 Aligned_cols=60 Identities=15% Similarity=0.035 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhh----CC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHH
Q 040261 165 TYSTITDGLCKEGFVDKAKELFLKMKD----EN-INPDVVTYTSLIRGFCYANDWNEAKCLFIEM 224 (343)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (343)
....+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455666666666666666665532 22 1233445555666666666666655554433
No 401
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.04 E-value=82 Score=26.67 Aligned_cols=167 Identities=13% Similarity=0.025 Sum_probs=91.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC---------CCc
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC---------FTP 85 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~ 85 (343)
...+.-+.+.|...|+++.|++.|-+....- .+..+..|..+|..-...|+|.....+..+..+.- +++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4567888999999999999999998865421 12234567777777788899988888877776541 233
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccc
Q 040261 86 DAVTFTSLIKGLCAESRIMEAAALFTKLRAFG------CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159 (343)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (343)
....+..+...+.+ ++..|.+.|-...... +.|...+.-..+.++.-.++-+--+.+.... .+....
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~-----~Fk~fl 302 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNE-----SFKLFL 302 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcch-----hhhhHH
Confidence 34444444444433 6666665553332111 2233333333333433333322221111110 000001
Q ss_pred cCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 040261 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDE 192 (343)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (343)
...+.....+...| .+++..++++++++...
T Consensus 303 el~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 303 ELEPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred hcChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 22334444444444 36788888888887653
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.64 E-value=35 Score=22.58 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHh
Q 040261 270 VYNTLMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
-|..|+..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888887766
No 403
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=65.51 E-value=34 Score=22.71 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=14.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCC
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIG 47 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~ 47 (343)
+++.+.++...++|+++.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555555555556666666655555
No 404
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.16 E-value=60 Score=24.79 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=11.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 040261 311 NGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
....+.|++++|.+.|.+++..
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcC
Confidence 3444555555555555555543
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.09 E-value=33 Score=21.85 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=14.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 040261 239 IMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
+.......|++++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445566777777777766654
No 406
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=65.03 E-value=52 Score=26.58 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+..++.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34566666666677666666666666666666777777776654
No 407
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=64.70 E-value=72 Score=25.57 Aligned_cols=150 Identities=11% Similarity=0.004 Sum_probs=88.9
Q ss_pred cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----
Q 040261 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY----ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN----- 246 (343)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 246 (343)
..+..+|.+++....+.|.+ .....+...|.. ..+..+|...++...+.|..+.......+...+..-
T Consensus 90 ~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 90 SRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred cccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence 34577888888877666532 233334444433 347888888888888887544322233344444332
Q ss_pred --CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC---
Q 040261 247 --GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL----TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNK--- 317 (343)
Q Consensus 247 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 317 (343)
.+...|...+.++...+ +......+...|.. ..+..+|...|....+.|. ......+. .+...|
T Consensus 167 ~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~ 239 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGV 239 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCc
Confidence 13346888888887776 33444444444433 3478888889988888763 33333333 444444
Q ss_pred ------------ChHHHHHHHHHHHhCCCC
Q 040261 318 ------------EIEGALSLYSEMLSKGIR 335 (343)
Q Consensus 318 ------------~~~~a~~~~~~~~~~~~~ 335 (343)
+...|...+......+..
T Consensus 240 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 240 KKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 667777777777666544
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.06 E-value=1.3e+02 Score=28.40 Aligned_cols=226 Identities=16% Similarity=0.110 Sum_probs=119.9
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCCH----H---HHHHHH-HHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHH
Q 040261 98 CAESRIMEAAALFTKLRAFGCKPDV----F---TYTTLI-NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169 (343)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 169 (343)
...+++.+|..++.++...-..|+. . .++.+- ......|++++|.++.+.....-+... ..+....+..+
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~--~~~r~~~~sv~ 503 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA--YRSRIVALSVL 503 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--chhhhhhhhhh
Confidence 3457899999998887654222221 1 233332 223457889999998888766532110 22345567777
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH-----HHHhccCcH--HHHHHHHHHHHHc-----CC-CCCHHHH
Q 040261 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI-----RGFCYANDW--NEAKCLFIEMMDQ-----GV-QPNVVTF 236 (343)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~-----~~-~~~~~~~ 236 (343)
..+..-.|++++|..+.....+..-.-+...+..+. ..+...|+. .+....+...... +. .+-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 788888999999999887765532122333332222 234455632 2333333333222 10 1223444
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCH--H--HHHHHHHHHhcCCchHHHHHHHHHHHhCCCCc----cHHHH
Q 040261 237 NVIMNELCKNGKMDEASRLLELMIQIG--VRPDA--S--VYNTLMDGFCLTGRVNRAKELFVSMESNGCMR----DVFSY 306 (343)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 306 (343)
..++.++.+ .+.+..-...-.+.| ..|.. . .+..|+......|+.++|...++++......+ +..+-
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 555555554 333322222222211 12222 1 12367778888999999999998887643223 22222
Q ss_pred HHHHHH--HHhcCChHHHHHHHHH
Q 040261 307 GILING--YCKNKEIEGALSLYSE 328 (343)
Q Consensus 307 ~~l~~~--~~~~~~~~~a~~~~~~ 328 (343)
...+.. ....|+.+.+.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 222322 3456777777666554
No 409
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=63.94 E-value=1.2e+02 Score=30.10 Aligned_cols=167 Identities=12% Similarity=0.022 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCChhHHHH------HHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH-----cCC--Ccc
Q 040261 20 FNILFGCLAKNKHYDTVLS------LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR-----SCF--TPD 86 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~ 86 (343)
+..-.......|.+.++.+ +++..-..-.++....|..+...+.+.|+.++|...-.+..- .|. .-+
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3334455566777777777 555322221245566788888889999999988776554421 111 223
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhc-----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-Ccc
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRAF-----G--CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF-GVV 158 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 158 (343)
...|..+............|...+.+.... | .+|...+++.+-..+...++.+.|.++++.+....... +..
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 344555555555566777777777665542 2 23334444555555556688999999988876643211 101
Q ss_pred ccCCcchHHHHHHHHHhcCChHHHHHHH
Q 040261 159 CKPDAITYSTITDGLCKEGFVDKAKELF 186 (343)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (343)
.-.+..++..+.+.+...+++..|....
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 1234456666666666666666655443
No 410
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.89 E-value=35 Score=21.74 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=27.4
Q ss_pred HhCCChhHHHHHHHHHHHc----CCCCC----HHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 244 CKNGKMDEASRLLELMIQI----GVRPD----ASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
.+.|++..|.+.+.+..+. +.... ......+.......|++++|...+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567777775555444332 21110 112222344455667777777777666653
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=63.64 E-value=1e+02 Score=28.08 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=22.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC
Q 040261 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178 (343)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (343)
+++.+|...|++-.+.++++.+...... .+.-...+|..++...+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~----~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG----DKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC----CeeehhHHHHHHHHHHhcCC
Confidence 4555555555555555555555543311 11112344555555555554
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.54 E-value=73 Score=25.23 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHH---------------HHHhCCCCccHHHH-HHHHHHHHhcCChHHHHHHHHHHH
Q 040261 267 DASVYNTLMDGFCLTGRVNRAKELFV---------------SMESNGCMRDVFSY-GILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
++.....+...|.+.|++.+|+..|- .-...|.+.+...| ...+--|...++...|...+....
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45566666667777777666665431 11112322233222 223334667788888888777666
Q ss_pred hC
Q 040261 331 SK 332 (343)
Q Consensus 331 ~~ 332 (343)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 413
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=63.47 E-value=83 Score=25.87 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=21.9
Q ss_pred ccCcHHHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHHhCCChhHHHHHHHHHHH
Q 040261 210 YANDWNEAKCLFIEMMDQ---GVQPNVVTFN--VIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
+.++.++|.++++++.+. .-.|+...|. .+.+.+...||..++.+.+.+..+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334455555555544432 1123333332 223333444555555555544443
No 414
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.26 E-value=1.3e+02 Score=27.83 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=27.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELM 259 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (343)
...-+....+.++++.+...+..|.... .-...-.--+.+++...|+.++|...|+.+
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444445556665555555553321 112222333455545556666666666554
No 415
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.21 E-value=77 Score=25.40 Aligned_cols=116 Identities=14% Similarity=0.007 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc-
Q 040261 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK----EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA- 211 (343)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 211 (343)
+..+|.+++....+.+ .......+...|.. ..+..+|..++++..+.|..+...+...+...|..-
T Consensus 92 ~~~~A~~~~~~~a~~g---------~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~ 162 (292)
T COG0790 92 DKTKAADWYRCAAADG---------LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL 162 (292)
T ss_pred cHHHHHHHHHHHhhcc---------cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh
Confidence 4555666666544443 22233334444433 336667777777766665433212233333333322
Q ss_pred ------CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCC
Q 040261 212 ------NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK----NGKMDEASRLLELMIQIGV 264 (343)
Q Consensus 212 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 264 (343)
.+...|...+.++...+ +......+...|.. ..+.++|...|....+.|.
T Consensus 163 ~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 163 QALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 12336777777777665 33334444444432 3477788888888888763
No 416
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.83 E-value=5.2 Score=32.38 Aligned_cols=118 Identities=17% Similarity=0.112 Sum_probs=78.3
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHH
Q 040261 208 FCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA-SVYNTLMDGFCLTGRVNR 286 (343)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 286 (343)
....|.+++|++.+...++.. ++....|..-.+++.+.+.+..|++=+...++.+ ||. .-|-.=-.+-...|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHH
Confidence 456788999999998888774 5566677777788889999999999888887764 332 233333334455689999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 287 AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
|...+....+.+..+....| +-...-..+..++-...+++..
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHH
Confidence 99999999988765554443 3333333444444444444443
No 417
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=62.55 E-value=25 Score=19.62 Aligned_cols=31 Identities=23% Similarity=0.053 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH
Q 040261 21 NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY 53 (343)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 53 (343)
..+..++.+.|++++|.+..+.+.+. .|+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 34555666777777777777776663 35443
No 418
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=61.86 E-value=55 Score=23.84 Aligned_cols=60 Identities=5% Similarity=-0.087 Sum_probs=36.7
Q ss_pred hHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcH
Q 040261 43 LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103 (343)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (343)
+.+.|+..+..- ..++..+...++.-.|.++++.+.+.+...+..|...-+..+.+.|-.
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 345565544432 344444555566667888888887777666666666666666666644
No 419
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.33 E-value=1.2e+02 Score=27.07 Aligned_cols=138 Identities=13% Similarity=0.024 Sum_probs=90.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHh-------HhCCCC-------------CCHHHHHH---HHHHHHhcCCcch
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRL-------NSIGLF-------------PDLYTYNI---LINCFCKMGRVSP 70 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~-------------~~~~~~~~---l~~~~~~~~~~~~ 70 (343)
|-.+.+.-.+..++..+|+.+-|..+.++. ....+. -|...|-+ -+..+.+.|-+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 346778888889999999988777766553 222211 13333333 3456778899999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHh-hcCcHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCC---hHHHHH
Q 040261 71 GFVVLGRILRSCFTPDAVTFTSLIKGLC-AESRIMEAAALFTKLRAFG---CKPDVFTYTTLINGLCRTGH---TIVALN 143 (343)
Q Consensus 71 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~---~~~a~~ 143 (343)
|.++.+.+.+....-|+.....+|+.|+ +..+++-.+++++.....+ .-|+-.--.++...|.+... ...|..
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~ 440 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALN 440 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHH
Confidence 9999999998766557777777887765 5577777777777765432 34454333456666666555 455666
Q ss_pred HHHHHHcc
Q 040261 144 LFEEMANG 151 (343)
Q Consensus 144 ~~~~~~~~ 151 (343)
.+.++...
T Consensus 441 ~l~qAl~~ 448 (665)
T KOG2422|consen 441 ALLQALKH 448 (665)
T ss_pred HHHHHHHh
Confidence 66666554
No 420
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.12 E-value=1.4e+02 Score=27.76 Aligned_cols=263 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCC---CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhc
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFP---DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (343)
+.-+.+.+.+++|+++-+.... ..| -.......+..+...|+++.|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Q ss_pred CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-----------------HccCCCCCccccCCc
Q 040261 101 SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEM-----------------ANGNGEFGVVCKPDA 163 (343)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------~~~~~~~~~~~~~~~ 163 (343)
++......+ +.......+...|..++..+.. .+...-.++.... .+.. ..+.
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-------Se~~ 505 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-------SEST 505 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-------ccch
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH-----------hccCcHHHHHHHHHHHHHcCCCCC
Q 040261 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF-----------CYANDWNEAKCLFIEMMDQGVQPN 232 (343)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~a~~~~~~~~~~~~~~~ 232 (343)
..-..|+..|...+++..|+.++-... +...+..+...- ...-+.+.|.+++-+-... .|.
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk------~~~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~lLldn~d~--ip~ 577 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQ------DKDVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDLLLDNRDS--ISP 577 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhcc------ChHHHHHHHHHhhHHHHHHHHHHHHccchhhHHHHHhhcccc--CCH
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--------------cCCchHHHHHHHHHHHhCC
Q 040261 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC--------------LTGRVNRAKELFVSMESNG 298 (343)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~~a~~~~~~~~~~~ 298 (343)
...++.+. ..++--..++......+..+-...-...+..|+ +.=+.++|.++.. +.|
T Consensus 578 a~Vveql~------~~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~---q~~ 648 (846)
T KOG2066|consen 578 SEVVEQLE------DNPKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICS---QKN 648 (846)
T ss_pred HHHHHHHh------cChHHHHHHHHHHhhcCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHH---hhC
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHH
Q 040261 299 CMRDVFSYGILINGYCKNKEIEGALSLY 326 (343)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 326 (343)
.+.-++-.+.+.|+..+|+.+.
T Consensus 649 ------~~~E~VYlLgrmGn~k~AL~lI 670 (846)
T KOG2066|consen 649 ------FYEELVYLLGRMGNAKEALKLI 670 (846)
T ss_pred ------cHHHHHHHHHhhcchHHHHHHH
No 421
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.70 E-value=72 Score=24.99 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=9.1
Q ss_pred HHHHHhCCChhHHHHHHHHH
Q 040261 240 MNELCKNGKMDEASRLLELM 259 (343)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~ 259 (343)
..-|...|++++|.++|+.+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33444444444444444444
No 422
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.59 E-value=87 Score=25.16 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHh----cCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCCCccccC
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRA----FGCKPDVFTYTT-LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (343)
...+..+...|++.++.+.+.++..+..+ .|.+.|...... +.-.|....-.++.++..+.+.+.|+++. -..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe--RrN 192 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE--RRN 192 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH--hhh
Confidence 55677788889999999888887766544 455655543332 33344444556777788888888876431 011
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040261 162 DAITYSTITDGLCKEGFVDKAKELFLKMKD 191 (343)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (343)
.-.+|..+- +....++.+|-.++.+...
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 122333322 2234567777777766554
No 423
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.05 E-value=81 Score=24.59 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=76.9
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCh
Q 040261 172 GLCKEGFVDKAKELFLKMKDENINPDV-VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV-TFNVIMNELCKNGKM 249 (343)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 249 (343)
-|.....++.|+..+.+....+ |+. .-|+.-+.++.+..+++.+..=-.+..+. .|+.. ....+.........+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 3555667888888887777653 555 44556667778888888877666666553 56643 333455566777888
Q ss_pred hHHHHHHHHHHH----cCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 040261 250 DEASRLLELMIQ----IGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295 (343)
Q Consensus 250 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (343)
+.|+..+.+... ..+++-......|..+=-..-...+..++.+...
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 889888887743 3344445566666655444445556666665554
No 424
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.61 E-value=49 Score=21.90 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=46.7
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHH
Q 040261 29 KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108 (343)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (343)
-....++|..+.+.+...+. -...+--+-+..+...|+++.|+ ..- .....||...|.++.. .+.|-.+++..
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~-~~~~~pdL~p~~AL~a--~klGL~~~~e~ 90 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLP-QCHCYPDLEPWAALCA--WKLGLASALES 90 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHH-TTS--GGGHHHHHHHH--HHCT-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhc-ccCCCccHHHHHHHHH--HhhccHHHHHH
Confidence 34567888888888877552 22233333445567788888872 111 2223567777765544 46777777777
Q ss_pred HHHHHHhcC
Q 040261 109 LFTKLRAFG 117 (343)
Q Consensus 109 ~~~~~~~~~ 117 (343)
.+.++...|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 777776654
No 425
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=59.26 E-value=96 Score=25.19 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHH----------hcCChHHH
Q 040261 253 SRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYC----------KNKEIEGA 322 (343)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a 322 (343)
.++|+.+.+.++.|.-..|.-+.-.+.+.-.+.....+|+.+... +.-|..|+..|+ -.|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 478888888999999999998888889999999999999999873 222555555554 34666666
Q ss_pred HHHHH
Q 040261 323 LSLYS 327 (343)
Q Consensus 323 ~~~~~ 327 (343)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66554
No 426
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.25 E-value=1.7e+02 Score=28.03 Aligned_cols=120 Identities=14% Similarity=0.045 Sum_probs=56.1
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcC--CC-CCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHccCCCCCccccCC--
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFG--CK-PDVFTYTTLINGLCRTGHT--IVALNLFEEMANGNGEFGVVCKPD-- 162 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 162 (343)
|..|+..|...|..++|+++|.+..+.. .. --...+..++.-+.+.+.. +-.+++-+-..+..+..+..+-.+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5666777777777777777777766531 00 0111222344444444433 444444444433332211111000
Q ss_pred c---c-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 040261 163 A---I-TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFC 209 (343)
Q Consensus 163 ~---~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (343)
. . .-...+-.|......+.+...++.+....-.++....+.++..|+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 0 0 001122334555666667777777665544445555555555554
No 427
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=58.60 E-value=39 Score=22.47 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=27.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS 69 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 69 (343)
++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555566667777777766654555555555556666655443
No 428
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.12 E-value=88 Score=24.40 Aligned_cols=79 Identities=10% Similarity=0.028 Sum_probs=35.6
Q ss_pred CCcchHHHHHHHHHHcCCCccH-HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCChHHHHH
Q 040261 66 GRVSPGFVVLGRILRSCFTPDA-VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF-TYTTLINGLCRTGHTIVALN 143 (343)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~ 143 (343)
.++..|...|.+.+.. .|+. ..|..-+.++.+..+++.+..--.+.++. .|+.. ....+.........+++|+.
T Consensus 24 k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3444455544444443 3333 33444445555555555554444444433 23322 22233344444555555555
Q ss_pred HHHHH
Q 040261 144 LFEEM 148 (343)
Q Consensus 144 ~~~~~ 148 (343)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 55554
No 429
>PRK09857 putative transposase; Provisional
Probab=57.88 E-value=1e+02 Score=25.00 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=11.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCC
Q 040261 310 INGYCKNKEIEGALSLYSEMLSKGIR 335 (343)
Q Consensus 310 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (343)
..-+.+.|.-+++.++.++|+..|+.
T Consensus 247 AEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 247 AERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33333334334444555555555444
No 430
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.58 E-value=1.3e+02 Score=26.30 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=67.0
Q ss_pred HHHHhcCChHHHHHHHHHhhh---CCCCCC-----hhhHHHHHHHHhccCcHHHHHHHHHHHHH-------cCCCCCH--
Q 040261 171 DGLCKEGFVDKAKELFLKMKD---ENINPD-----VVTYTSLIRGFCYANDWNEAKCLFIEMMD-------QGVQPNV-- 233 (343)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 233 (343)
..+.-.|++.+|.+++-..-- .|...+ -..+|.+.-.+.+.|.+..+..+|....+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345567888888888755321 221112 12245566666677777777777766653 3444421
Q ss_pred ---------HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 040261 234 ---------VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280 (343)
Q Consensus 234 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (343)
.+|| ..-.+...|++-.|.+.|.+..+. +..++..|-.+..+|.-
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2333 344566788888888888887765 35677888888887763
No 431
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.41 E-value=54 Score=21.71 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 040261 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291 (343)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (343)
...++|..+.+.+...+. -...+-.+-+..+...|++++| +..-.. ...||...|.+|. -.+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 346677777777666542 1222222334456677777777 111111 1246666665553 35667777777777
Q ss_pred HHHHhCC
Q 040261 292 VSMESNG 298 (343)
Q Consensus 292 ~~~~~~~ 298 (343)
.++..+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7666654
No 432
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.27 E-value=47 Score=20.98 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=20.2
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 040261 99 AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 141 (343)
..|+.+.|.+++..+. .|. ..|...+.++-..|+-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 3456666666666665 422 2455555555555554433
No 433
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.94 E-value=91 Score=24.24 Aligned_cols=17 Identities=18% Similarity=0.530 Sum_probs=10.8
Q ss_pred HHhcCChhHHHHHHHHh
Q 040261 27 LAKNKHYDTVLSLFKRL 43 (343)
Q Consensus 27 ~~~~~~~~~a~~~~~~~ 43 (343)
+.-.+++++|.++|.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 33445777777777654
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.39 E-value=80 Score=23.40 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=12.7
Q ss_pred HHHhhcCcHHHHHHHHHHHHh
Q 040261 95 KGLCAESRIMEAAALFTKLRA 115 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~ 115 (343)
-.|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345566666666666666554
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.23 E-value=1.1e+02 Score=25.06 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHh----CCCCccH
Q 040261 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI-GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES----NGCMRDV 303 (343)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 303 (343)
+..|...++.+..+ +....++..+..+.+.+. |-.--...+.....-|++.||-+.|.+.+.+..+ .|.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44455555555443 122333334444444433 2122234566777889999999999988876544 4666666
Q ss_pred HHHHHHHH-HHHhcCChHHHHHHHHHHHhCCCC
Q 040261 304 FSYGILIN-GYCKNKEIEGALSLYSEMLSKGIR 335 (343)
Q Consensus 304 ~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~ 335 (343)
..+.+-+. .|..+.-..+-++..+.+.++|-.
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 55543332 233333344555555555555543
No 436
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=55.49 E-value=38 Score=22.77 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCC
Q 040261 21 NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67 (343)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 67 (343)
..++..+.+.+..-.|.++++.+.+.+...+..|.-..+..+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 34555555555566666666666665555555544445555555553
No 437
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.34 E-value=1.1e+02 Score=24.65 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHH----cCCCCCHHHHHH-HHHHHhcCCchHHHHHHHHHHHhCCCCccHH---
Q 040261 233 VVTFNVIMNELCKNGKMDEASRLLELMIQ----IGVRPDASVYNT-LMDGFCLTGRVNRAKELFVSMESNGCMRDVF--- 304 (343)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 304 (343)
...+..+...|++.+|.+.+.++..+..+ .|.+.|.....+ |.-.|....-.++-++..+.+.++|...+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 45666777778888887777776655443 354544322111 2222333333566666777777776544332
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 305 -SYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 305 -~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
+|..+. +....++.+|-.++-+.+
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 232221 233345666666665544
No 438
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.11 E-value=1.5e+02 Score=26.06 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=73.2
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCccccC---CcchHHHHHHHHHhcCChHHHHHHHHHhhh-------CCCCCCh-
Q 040261 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKP---DAITYSTITDGLCKEGFVDKAKELFLKMKD-------ENINPDV- 198 (343)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~- 198 (343)
+.+.-.|++.+|.+++...--.....+ ...| +-..+|.+.-...+.|.+..+..+|.+..+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~-~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGG-TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCc-cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 456678999999988866533321110 0111 122346777777788888888877777653 3544421
Q ss_pred ----------hhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040261 199 ----------VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244 (343)
Q Consensus 199 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (343)
.+|| ..-.|...|++-.|.+.|...... +..++..|-.+..+|.
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 2233 334567889999999999888776 4667888998988886
No 439
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=54.92 E-value=25 Score=17.21 Aligned_cols=24 Identities=17% Similarity=0.477 Sum_probs=14.5
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHHHHH
Q 040261 32 HYDTVLSLFKRLNSIGLFPDLYTYNI 57 (343)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 57 (343)
.++.|..+|++.... .|+..+|..
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 356677777776653 366655544
No 440
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=54.22 E-value=92 Score=23.44 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHHHhcCCc
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY-TYNILINCFCKMGRV 68 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 68 (343)
..+.++..+...|+++.|.++|.-+.+.. +.|.. .|..-+..+.+.+.-
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~ 92 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQ 92 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCc
Confidence 45566777777777777777777776543 23332 344444444444443
No 441
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=53.12 E-value=28 Score=28.05 Aligned_cols=84 Identities=7% Similarity=-0.015 Sum_probs=59.2
Q ss_pred HhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHH-HHHHHHhcCCcchHHHHHHHHHHcCCCcc
Q 040261 8 LRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNI-LINCFCKMGRVSPGFVVLGRILRSCFTPD 86 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 86 (343)
......+.++..|...+....+.|.+.+...+|.+..... |.|+..|.. .-.-+...++++.+..+|...++.+.. +
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~ 175 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-S 175 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-C
Confidence 3334445788889998888888999999999999988765 456655543 233455678888898888888876533 4
Q ss_pred HHHHHHH
Q 040261 87 AVTFTSL 93 (343)
Q Consensus 87 ~~~~~~l 93 (343)
+..|...
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 5555443
No 442
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.74 E-value=53 Score=20.26 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=14.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCC
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIG 47 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~ 47 (343)
+++.+.++.-.++|+++++.|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555555555666666666665555
No 443
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.44 E-value=73 Score=21.79 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 040261 286 RAKELFVSMESNGCMRD-VFSYGILINGYCKNKEIEGALSLYSE 328 (343)
Q Consensus 286 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 328 (343)
.+.++|..|..+|+... ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666554433 34555555666666677777666654
No 444
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=52.04 E-value=68 Score=21.30 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 040261 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137 (343)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (343)
..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 15 ~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 15 GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 333444444454444444444444444444444443
No 445
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.69 E-value=68 Score=21.56 Aligned_cols=43 Identities=5% Similarity=-0.054 Sum_probs=19.0
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhc
Q 040261 58 LINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100 (343)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (343)
++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 3444444444555555555555554444444333334443333
No 446
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=51.26 E-value=1.3e+02 Score=24.49 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=23.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 040261 224 MMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263 (343)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 263 (343)
..+.|+..+...+..++.. ..|++..|+..++.+...|
T Consensus 201 a~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~g 238 (346)
T KOG0989|consen 201 ASKEGVDIDDDALKLIAKI--SDGDLRRAITTLQSLSLLG 238 (346)
T ss_pred HHHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccC
Confidence 3445666666666655554 3577777777777666544
No 447
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.67 E-value=1.6e+02 Score=25.05 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=22.8
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hCCChhHHHHHHHHH
Q 040261 210 YANDWNEAKCLFIEMMDQGVQPNVV--TFNVIMNELC--KNGKMDEASRLLELM 259 (343)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~ 259 (343)
+.+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++..
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 455566666666665554 333332 2233333332 244455555555543
No 448
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.44 E-value=72 Score=21.13 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
.-|..++..|...|..++|.+++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3577888888888888888888888776
No 449
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=50.28 E-value=27 Score=16.15 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHH
Q 040261 284 VNRAKELFVSME 295 (343)
Q Consensus 284 ~~~a~~~~~~~~ 295 (343)
.+.|..+|+++.
T Consensus 3 ~~~~r~i~e~~l 14 (33)
T smart00386 3 IERARKIYERAL 14 (33)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 450
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.49 E-value=2.4e+02 Score=26.85 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=35.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHH--HHHHHHHHHHhcCCcchHHHHHHHHH
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY--TYNILINCFCKMGRVSPGFVVLGRIL 79 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (343)
+-..|...|+++.|+++-+. .|+.. ++..-...+.+.+++..|.+++.++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 44566778999999887543 24432 44455566778888888988888874
No 451
>PRK09857 putative transposase; Provisional
Probab=49.13 E-value=1.4e+02 Score=24.16 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCcc
Q 040261 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD 302 (343)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (343)
+..++......++.++...+++.+.+. .+........+..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555667776677777766655 233444455566666677777778888888888876654
No 452
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.62 E-value=1.5e+02 Score=24.62 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (343)
.|-.+++.....|.++.++.+|++.+..|..|-...-..++..+.
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 455556666666666667777777666666665555555555544
No 453
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.92 E-value=2.8e+02 Score=26.96 Aligned_cols=248 Identities=10% Similarity=-0.005 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 040261 49 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128 (343)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (343)
.++..+-...+..+.+.+.. .+...+..+++. ++...-...+.++.+.+........+..+... +|...-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 46777777777777777753 355555555542 34444445555554443221222333333332 455555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 040261 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGF 208 (343)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (343)
+..+...+..+ ...+.. ... .++...-...+.++.+.+..+. +..... .++...-...+.++
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---------D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL 766 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---------DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGL 766 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---------CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHH
Confidence 66665543221 122222 222 2345555666666666555432 222222 24555556666666
Q ss_pred hccCcHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHH
Q 040261 209 CYANDWNE-AKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRA 287 (343)
Q Consensus 209 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 287 (343)
...+..+. +...+..+.. .++...-...+.++...|+...+...+..+.+ .++..+-...+.++...+.. ++
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a 839 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VA 839 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-ch
Confidence 66654432 3344444443 34566666777888888876655444544443 34555666667777776653 45
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 288 KELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
...+..+.+ .|+...-...+.++.+.+....+...+..+.+
T Consensus 840 ~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 840 VPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 555555554 35666656666666665333455555555554
No 454
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=46.51 E-value=58 Score=18.92 Aligned_cols=47 Identities=17% Similarity=0.004 Sum_probs=23.8
Q ss_pred hcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHH-----HhcCChHHHHHH
Q 040261 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY-----CKNKEIEGALSL 325 (343)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~ 325 (343)
...|++=+|-++++.+=.....+....+..+|... .+.|+...|.++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 44566666666666664332223444455555432 345666666554
No 455
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.48 E-value=1.9e+02 Score=24.86 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=13.6
Q ss_pred CChHHHHHHHHHhhhCCCCCChh
Q 040261 177 GFVDKAKELFLKMKDENINPDVV 199 (343)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~ 199 (343)
++.+.|+.++..|.+.|..|...
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 56666666666666666554433
No 456
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.09 E-value=1.7e+02 Score=24.26 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 040261 214 WNEAKCLFIEMMDQGVQPNV----VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279 (343)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (343)
.+++..++..+++. .|+. .-|-.++......|.++.++.+|++++..|..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45667777766665 4443 3455667777778888888888888888888877766666666544
No 457
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.98 E-value=1.5e+02 Score=23.51 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=17.9
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHH
Q 040261 161 PDAITYSTITDGLCKEGFVDKAKELF 186 (343)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (343)
-++.....+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35667777888888888888877666
No 458
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=45.50 E-value=3.3e+02 Score=27.32 Aligned_cols=156 Identities=16% Similarity=0.072 Sum_probs=96.0
Q ss_pred HHHHhcCChHHHHH------HHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHH-------HcCCCCCHHHHH
Q 040261 171 DGLCKEGFVDKAKE------LFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM-------DQGVQPNVVTFN 237 (343)
Q Consensus 171 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~ 237 (343)
......|.+.++.+ ++......-.++....|..+...+.+.++.++|...-.... ..+..-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33445566666666 55533222234566778888888999999999887654432 222222345666
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC-----CC--CccH
Q 040261 238 VIMNELCKNGKMDEASRLLELMIQI-----G--VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-----GC--MRDV 303 (343)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~ 303 (343)
.+.-.+...++...|...+.+.... | -+|...+++.+-..+...++++.|.++.+.+... |. -.+.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6666666777888888888777653 1 1333444444444444557888898888877653 11 1345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHH
Q 040261 304 FSYGILINGYCKNKEIEGALSLY 326 (343)
Q Consensus 304 ~~~~~l~~~~~~~~~~~~a~~~~ 326 (343)
.++..+.+.+...+++..|....
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHH
Confidence 56777777777777777665443
No 459
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=45.48 E-value=64 Score=27.65 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=28.5
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHH
Q 040261 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMM 225 (343)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (343)
..+++-++.++.+.+.|. +| ....-+..|.+.++++.|.+.++.-.
T Consensus 25 ~~~~e~~~~l~~l~~~g~-~d--vl~ltiDsytr~~~~~~a~~~l~~~~ 70 (428)
T cd00245 25 PLLEEHIELLRTLQEEGA-AD--VLPLTIDSYTRVNDYEEAEEGLEESI 70 (428)
T ss_pred CCHHHHHHHHHHHHhcCC-CC--eeccccccchhhhhhHHHHHHHHhhh
Confidence 345666667777766642 22 23344667777778887777777654
No 460
>PRK09462 fur ferric uptake regulator; Provisional
Probab=44.98 E-value=1.1e+02 Score=21.62 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=27.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhC-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 040261 224 MMDQGVQPNVVTFNVIMNELCKN-GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282 (343)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (343)
+.+.|.+++..-. .++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344555444332 233333332 345566666666666554444444444445555554
No 461
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.40 E-value=3.2e+02 Score=26.78 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=65.0
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccC--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 040261 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN--DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254 (343)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (343)
++.....+.+....... .....-+..++.+|++.+ ++++|+..+..+.+. +...-...+...+- +-.+.+
T Consensus 792 ~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f---LvDvn~ 863 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF---LVDVNK 863 (928)
T ss_pred cHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee---eccHHH
Confidence 34444444444433321 123444566777888887 788888888888765 11111112222111 122233
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040261 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329 (343)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 329 (343)
+|+.+... -|.. .+++-+-..+.|+.+=+-+++++.+. +++..-| .|+ ...|+++.|++-+.++
T Consensus 864 Ly~~ALG~---YDl~--Lal~VAq~SQkDPKEYLPfL~~L~~l--~~~~rry--~ID--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 864 LYDVALGT---YDLE--LALMVAQQSQKDPKEYLPFLQELQKL--PPLYRRY--KID--DHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHhhh---cCHH--HHHHHHHHhccChHHHHHHHHHHHhC--Chhheee--eHh--hhhCCHHHHHHHHHhh
Confidence 33333221 0111 12333444556777777777777664 2332222 122 2456888888776543
No 462
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.43 E-value=85 Score=19.92 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 267 DASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
|...--.+...+...|++++|.+.+-.+.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444455555555556666665555555543
No 463
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=43.11 E-value=1.1e+02 Score=21.21 Aligned_cols=98 Identities=8% Similarity=-0.087 Sum_probs=0.0
Q ss_pred hHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 040261 3 IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82 (343)
Q Consensus 3 i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (343)
..+.....|.. ....++..++--+...|+++.|+++.+.+++.|.+.....-...-..++ ++..+......+.|
T Consensus 35 ~v~g~L~~g~g-~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~~f~R~~~t~va-----eev~~~a~~~~~~g 108 (132)
T PF05944_consen 35 WVEGVLASGSG-AQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPDRFKRTLPTFVA-----EEVADWALRAAKAG 108 (132)
T ss_pred HHHHHHHcCCC-CcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccccccCcchHHHH-----HHHHHHHHHHHHcC
Q ss_pred CCccHHHHHHHHHHHhhcCcHHHH
Q 040261 83 FTPDAVTFTSLIKGLCAESRIMEA 106 (343)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a 106 (343)
...+...+......-....-.+++
T Consensus 109 ~~~~~~~l~~~~~l~~~~dmpd~v 132 (132)
T PF05944_consen 109 QSFEPYFLSRVFELTADQDMPDQV 132 (132)
T ss_pred CCCChHHHHHHHHHHccCCCCCCC
No 464
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.98 E-value=1.6e+02 Score=23.01 Aligned_cols=102 Identities=20% Similarity=0.259 Sum_probs=63.4
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc-C-----------CCCCHHHHHHHH
Q 040261 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-G-----------VQPNVVTFNVIM 240 (343)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~ 240 (343)
|.+..+.+--.++.+-....+++-+...+.+++ +...|+..+|+..++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 455555555555555555555555555555554 35678888887777654321 1 256666666777
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 241 NELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278 (343)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (343)
..|. .+++++|.+++.++-+.|+.|.. ..+.+.+.+
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 6664 56888888888888888876643 344444443
No 465
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.91 E-value=2.7e+02 Score=25.55 Aligned_cols=86 Identities=8% Similarity=0.095 Sum_probs=56.2
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 040261 209 CYANDWNEAKCLFIEMMDQGVQPN------VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282 (343)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (343)
.+..++..+.+.|..-... ++.| ...+..+.-+|....+++.|.++++++.+.+ +.+..+-..+..++...|
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhc
Confidence 3456667777776654443 1211 2344556667778888899999998888765 345555556666777788
Q ss_pred chHHHHHHHHHHHh
Q 040261 283 RVNRAKELFVSMES 296 (343)
Q Consensus 283 ~~~~a~~~~~~~~~ 296 (343)
.-++|+........
T Consensus 443 ~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 443 KSEEALTCLQKIKS 456 (872)
T ss_pred chHHHHHHHHHHHh
Confidence 88888877766543
No 466
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.62 E-value=2.4e+02 Score=24.91 Aligned_cols=86 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC--------------CCCccHHHHHHHHHH
Q 040261 248 KMDEASRLLELMIQI-GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN--------------GCMRDVFSYGILING 312 (343)
Q Consensus 248 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~l~~~ 312 (343)
..+.....++...+. |+..+......++. ...|+...|+.+++++... |.. +...+..++.+
T Consensus 181 s~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~-~~~~~~~l~~s 257 (484)
T PRK14956 181 PLSVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYH-GIEFLTSFIKS 257 (484)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCC-CHHHHHHHHHH
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC
Q 040261 313 YCKNKEIEGALSLYSEMLSKGIRP 336 (343)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~p 336 (343)
....+....|+.++.++...|..|
T Consensus 258 i~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 258 LIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHcCCcHHHHHHHHHHHHHcCCCH
No 467
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=42.57 E-value=1.6e+02 Score=22.77 Aligned_cols=100 Identities=13% Similarity=0.000 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHH--HHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHH
Q 040261 229 VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV-RPDASVY--NTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305 (343)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (343)
+.+...-++.|+--|.-...+.+|...|..-..... ..+...+ ..-|......|++++|.+....+...-+..|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Q ss_pred HHHHHHH----HHhcCChHHHHHHHHH
Q 040261 306 YGILING----YCKNKEIEGALSLYSE 328 (343)
Q Consensus 306 ~~~l~~~----~~~~~~~~~a~~~~~~ 328 (343)
+-.|..- ..+.|..++|++..+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
No 468
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.51 E-value=1.3e+02 Score=21.88 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=36.7
Q ss_pred HHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 040261 79 LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139 (343)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (343)
.+.|+..+..- ..++..+...++.-.|.++++.+.+.+..++..|.-.-+..+...|-+.
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 34455544332 3444555555556677888888887776666666666666777766543
No 469
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=41.97 E-value=1.5e+02 Score=22.37 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQIG 263 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 263 (343)
...+.++..|...||++.|.++|.-+++..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 345666777777777877777777777653
No 470
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.92 E-value=1.9e+02 Score=23.59 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCCchHHH
Q 040261 269 SVYNTLMDGFCLTGRVNRA 287 (343)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a 287 (343)
..|..|+.+++.+|+.+..
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3455566666666655543
No 471
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.86 E-value=1.2e+02 Score=21.35 Aligned_cols=14 Identities=7% Similarity=0.012 Sum_probs=5.7
Q ss_pred chHHHHHHHHHHcC
Q 040261 69 SPGFVVLGRILRSC 82 (343)
Q Consensus 69 ~~a~~~~~~~~~~~ 82 (343)
-.|.++++.+.+.+
T Consensus 34 ~sa~eI~~~l~~~~ 47 (148)
T PRK09462 34 VSAEDLYKRLIDMG 47 (148)
T ss_pred CCHHHHHHHHHhhC
Confidence 33444444444333
No 472
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.65 E-value=1e+02 Score=20.31 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=11.0
Q ss_pred HHHHHhccCcHHHHHHHHHHH
Q 040261 204 LIRGFCYANDWNEAKCLFIEM 224 (343)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~ 224 (343)
++.-|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344455556666666655553
No 473
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.57 E-value=1.7e+02 Score=22.83 Aligned_cols=17 Identities=6% Similarity=-0.060 Sum_probs=9.2
Q ss_pred HhCCChhHHHHHHHHHH
Q 040261 244 CKNGKMDEASRLLELMI 260 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~ 260 (343)
...|+.++|..+.+...
T Consensus 180 ei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 180 EILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HTSS-HHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHH
Confidence 34566666666655543
No 474
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=41.54 E-value=58 Score=17.49 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=26.6
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 040261 5 DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLN 44 (343)
Q Consensus 5 ~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 44 (343)
+.|.+...-|.....+..+...+-..+....++++|+++.
T Consensus 3 ~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 3 NDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred hhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4555555666777778888888877777777777776654
No 475
>PRK12798 chemotaxis protein; Reviewed
Probab=41.47 E-value=2.3e+02 Score=24.32 Aligned_cols=229 Identities=10% Similarity=0.029 Sum_probs=128.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHH-hhc
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY-TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL-CAE 100 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 100 (343)
.+-....-|++.-...++ ..+..++.. ....-+.+| -.|+..++.+.+..+.....++....+..|+.+- ...
T Consensus 87 a~iy~lSGGnP~vlr~L~----~~d~~~~~d~~L~~g~laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~ 161 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLL----ARDKLGNFDQRLADGALAY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA 161 (421)
T ss_pred HHhhHhcCCCHHHHHHHH----HcCCCChhhHHHHHHHHHH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc
Confidence 344444556664444443 333333322 122223334 3588899999999888776677777777777653 445
Q ss_pred CcHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCc-chHHHHHHHHHh
Q 040261 101 SRIMEAAALFTKLRAFGCKPDV----FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA-ITYSTITDGLCK 175 (343)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 175 (343)
.+...|+++|+..+-. .|.+ .....-+......|+.+++..+-.++...... .|-. ..+..+...+.+
T Consensus 162 ~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~-----S~YA~~F~~~F~~~~~~ 234 (421)
T PRK12798 162 TDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRH-----SPYASQFAQRFVDLVVR 234 (421)
T ss_pred cCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhcc-----CchHHHHHHHHHHHHHh
Confidence 6899999999987654 2332 24445566778899999988877777766421 1111 122333344444
Q ss_pred cCCh---HHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH--hCCCh
Q 040261 176 EGFV---DKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV-VTFNVIMNELC--KNGKM 249 (343)
Q Consensus 176 ~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~--~~~~~ 249 (343)
.++- +....++..|.. .--...|..+.+.-.-.|+.+-|.-.-++........+. ..-..+-.+.. -..+.
T Consensus 235 ~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~ 311 (421)
T PRK12798 235 LDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDA 311 (421)
T ss_pred ccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccH
Confidence 4432 233333333322 123567888888888899998888777777665311111 11111112222 23456
Q ss_pred hHHHHHHHHHHHcCCCC
Q 040261 250 DEASRLLELMIQIGVRP 266 (343)
Q Consensus 250 ~~a~~~~~~~~~~~~~~ 266 (343)
+++...+..+-...+.+
T Consensus 312 ~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 312 ESALEELSQIDRDKLSE 328 (421)
T ss_pred HHHHHHHhcCChhhCCh
Confidence 66666666665544443
No 476
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=41.28 E-value=2.4e+02 Score=24.42 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=53.9
Q ss_pred hCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhCCChhHHHHHHHHHHHc
Q 040261 191 DENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE--------LCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~ 262 (343)
...+.||..+.+.+...++..-..+-...+|+-..+.+ .|-...+-+++-. -.+....++++++++.|...
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 34577888888888887777777788888888887775 4444433333321 12344567788888877543
Q ss_pred CCCCCHHHHHHHHHHHh
Q 040261 263 GVRPDASVYNTLMDGFC 279 (343)
Q Consensus 263 ~~~~~~~~~~~l~~~~~ 279 (343)
--..|..-+..|...|+
T Consensus 255 L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYS 271 (669)
T ss_pred cccccchhHHHHHHHHh
Confidence 21234444555555444
No 477
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.18 E-value=2e+02 Score=23.52 Aligned_cols=21 Identities=10% Similarity=0.433 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhCCChhHHH
Q 040261 233 VVTFNVIMNELCKNGKMDEAS 253 (343)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~ 253 (343)
..+|..|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346788888888888877543
No 478
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.96 E-value=1.6e+02 Score=22.49 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCChh-------HHHHHHHHHHHcCCCC----C-HHHHHHHHHHHhcCCchHHHHHHHHHHHhCC
Q 040261 235 TFNVIMNELCKNGKMD-------EASRLLELMIQIGVRP----D-ASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298 (343)
Q Consensus 235 ~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (343)
.+..+...|-..|+.+ .|...|.+..+..-.| + ..+.-.+.....+.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444555566666633 3555555554432111 1 2233345556678888888988888888764
No 479
>PHA02875 ankyrin repeat protein; Provisional
Probab=40.80 E-value=2.3e+02 Score=24.18 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=33.5
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCHHH--HHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHH--HHHHHHHHHhhcC
Q 040261 26 CLAKNKHYDTVLSLFKRLNSIGLFPDLYT--YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV--TFTSLIKGLCAES 101 (343)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 101 (343)
..++.|+.+-+..+ .+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 33455665443333 34454444322 222333444555543 334444455444322 1112334445566
Q ss_pred cHHHHHHHHH
Q 040261 102 RIMEAAALFT 111 (343)
Q Consensus 102 ~~~~a~~~~~ 111 (343)
+.+.+..+++
T Consensus 80 ~~~~v~~Ll~ 89 (413)
T PHA02875 80 DVKAVEELLD 89 (413)
T ss_pred CHHHHHHHHH
Confidence 6665544443
No 480
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.73 E-value=1e+02 Score=20.09 Aligned_cols=47 Identities=15% Similarity=-0.034 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 040261 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150 (343)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (343)
....+.++++...+....+-....|.-.|++.|+.+.+.+-|+.-..
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 34455566666554333333334455567788888888777776554
No 481
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.44 E-value=1.8e+02 Score=22.72 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHH
Q 040261 21 NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK-MGRVSPGFVVLGRILR 80 (343)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 80 (343)
-.++..+-+.++++++...+.++...+...+..--+.+-.+|-. .|....+.+++..+..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 44677788899999999999999988777777766666666532 2444555666665544
No 482
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=40.42 E-value=3e+02 Score=25.31 Aligned_cols=127 Identities=14% Similarity=0.116 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhC----CCCCCHHHHHHH-HHHHHhcCCcchHHHHHHHHHHcC---CCccHHHHHH
Q 040261 21 NILFGCLAKNKHYDTVLSLFKRLNSI----GLFPDLYTYNIL-INCFCKMGRVSPGFVVLGRILRSC---FTPDAVTFTS 92 (343)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 92 (343)
..++..+.+.+... |....++.++. +..+-...+..+ +..+...++...|.+.++.+.... ..|...++-.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 34566666666655 88888876542 111222333333 223333479999999998887542 2344555555
Q ss_pred HHHHHh--hcCcHHHHHHHHHHHHhcC---------CCCCHHHHHHHHHHH--HhcCChHHHHHHHHHH
Q 040261 93 LIKGLC--AESRIMEAAALFTKLRAFG---------CKPDVFTYTTLINGL--CRTGHTIVALNLFEEM 148 (343)
Q Consensus 93 l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 148 (343)
++.+.. +.+..+++.+.++++.... ..|-..+|..+++.+ ...|++..+...++++
T Consensus 183 l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 183 LSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555543 3455667777776663321 123455666666554 4566666666555444
No 483
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.82 E-value=2e+02 Score=23.25 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHH
Q 040261 120 PDVFTYTTLINGLCRTGHTIVALN 143 (343)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~a~~ 143 (343)
-|+..|..+..+|.-.|+...+.+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHH
Confidence 477788888888888887665543
No 484
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=39.35 E-value=83 Score=19.04 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=14.4
Q ss_pred cCCcchHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040261 65 MGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96 (343)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (343)
.++.+.+.+++++..+.|.+|.......+..+
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~ 45 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPA 45 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555555555555554444444333333333
No 485
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=39.29 E-value=97 Score=19.41 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=36.1
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHH
Q 040261 36 VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIME 105 (343)
Q Consensus 36 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (343)
...+++.+.+.|+- +...... .-+...+.+++.++++.+..+| ..+|..+..++...|...-
T Consensus 18 ~~~v~~~L~~~~Vl-t~~~~e~---I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPDMIEE---IQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHHhcCCC-CHHHHHH---HHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHH
Confidence 34567777777643 2222222 2234455677888888777765 3466777777766665443
No 486
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.03 E-value=2.3e+02 Score=27.06 Aligned_cols=161 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC
Q 040261 22 ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101 (343)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (343)
.+|..+.+.|-.+-|+...+.-.. -...+...|+++.|++...++- +..+|..|.....+.|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~t------------RF~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERT------------RFELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcch------------heeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhc
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHH
Q 040261 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDK 181 (343)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (343)
+.+-|+..|++.+ .|..|--.|.-.|+.++-.++.+....+. -.........-.|+.++
T Consensus 687 n~~IaEm~yQ~~k---------nfekLsfLYliTgn~eKL~Km~~iae~r~------------D~~~~~qnalYl~dv~e 745 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTK---------NFEKLSFLYLITGNLEKLSKMMKIAEIRN------------DATGQFQNALYLGDVKE 745 (1202)
T ss_pred chHHHHHHHHHhh---------hhhheeEEEEEeCCHHHHHHHHHHHHhhh------------hhHHHHHHHHHhccHHH
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 040261 182 AKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230 (343)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 230 (343)
-..+++..-. +...-.....+|.-++|.++.++.......
T Consensus 746 rvkIl~n~g~---------~~laylta~~~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 746 RVKILENGGQ---------LPLAYLTAAAHGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred HHHHHHhcCc---------ccHHHHHHhhcCcHHHHHHHHHhhccccCC
No 487
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.81 E-value=3.2e+02 Score=25.20 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=53.2
Q ss_pred HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-C------------CCHHHHHHHHHHHh
Q 040261 214 WNEAKCLFIEM-MDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV-R------------PDASVYNTLMDGFC 279 (343)
Q Consensus 214 ~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~------------~~~~~~~~l~~~~~ 279 (343)
.++....+... .+.|+..+......++.. ..|+...+..+++++...+- . ++......++.++.
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~ 262 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555555444 445777777777766664 46899999999887765431 1 22233334444443
Q ss_pred cCCchHHHHHHHHHHHhCCCCc
Q 040261 280 LTGRVNRAKELFVSMESNGCMR 301 (343)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~ 301 (343)
.|+...+..+++++...|..+
T Consensus 263 -~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 263 -QGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred -cCCHHHHHHHHHHHHHcCCCH
Confidence 477888888888888776543
No 488
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.42 E-value=2.8e+02 Score=24.51 Aligned_cols=235 Identities=9% Similarity=0.099 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHh-----cC-ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHH
Q 040261 15 PPVCSFNILFGCLAK-----NK-HYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~-----~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (343)
++..-|+..|..|.. .| .......+|+.....+ ......+......+........+...-..+...+...+..
T Consensus 313 ~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~-~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k 391 (568)
T KOG2396|consen 313 PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELK-LLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGK 391 (568)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHH
Q ss_pred HHHHHHHHHhhc--CcHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHccCCCCCccccCCcch
Q 040261 89 TFTSLIKGLCAE--SRIMEAAALFTKLRAFGCKPDVFTYTTLI-NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165 (343)
Q Consensus 89 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 165 (343)
.|..-+....+. .---.-..++..+...-..+....|+... ..+......+.....+..+.... ....
T Consensus 392 ~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~---------~~tl 462 (568)
T KOG2396|consen 392 MWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGAD---------SVTL 462 (568)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCc---------eeeh
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccC--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN--DWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243 (343)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (343)
-+.++..+.+.|-..+|...+..+... .+|+...|..+++.-.... +..-+..+++.+... +-.++..|...+.--
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMKEE 540 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHHhh
Q ss_pred HhCCChhHHHHHHHHHHH
Q 040261 244 CKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~ 261 (343)
...|..+.+-.++.++.+
T Consensus 541 ~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccCCCcccccHHHHHHHH
No 489
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=38.37 E-value=1.8e+02 Score=22.71 Aligned_cols=148 Identities=19% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCCCCC----hhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------
Q 040261 182 AKELFLKMKDENINPD----VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG---------- 247 (343)
Q Consensus 182 a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------- 247 (343)
+.+.|..+.+. +..| ..+..-|+.--...|.+.+.-.++..-...|+..+...-..++-++...+
T Consensus 33 v~k~f~~a~~~-i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~ 111 (246)
T PF07678_consen 33 VVKVFSQAKKY-IFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEY 111 (246)
T ss_dssp HHHHHHHHTTT-S-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCH
T ss_pred HHHHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhh
Q ss_pred --ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC-------------------------CCC
Q 040261 248 --KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN-------------------------GCM 300 (343)
Q Consensus 248 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------~~~ 300 (343)
-.++|..+++.-... ..+..+...+.-++...|+...+.++++.+... +..
T Consensus 112 ~~~i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s 189 (246)
T PF07678_consen 112 ENAINKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSS 189 (246)
T ss_dssp HHHHHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHH
T ss_pred HHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccch
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 301 RDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.++.+-.-.+-++.+.++.+.+..+.+-+.+.
T Consensus 190 ~~vEtTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 190 LDVETTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
No 490
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=38.28 E-value=1.1e+02 Score=19.76 Aligned_cols=57 Identities=21% Similarity=0.158 Sum_probs=27.1
Q ss_pred hcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCH
Q 040261 64 KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122 (343)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 122 (343)
+..+...|..+|..+.+.|.- +...+..+...+...++.+-- ..+..-++..+.|++
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gll-~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGRC-DETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred hccCcCcHHHHHHHHHHcCCC-ccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 445566666666666666533 222333444444444444443 444333333344443
No 491
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.21 E-value=3e+02 Score=24.67 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 040261 126 TTLINGLCRTGHTIVALNLFEEMA 149 (343)
Q Consensus 126 ~~l~~~~~~~~~~~~a~~~~~~~~ 149 (343)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 456667888888888888877764
No 492
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=38.04 E-value=20 Score=20.26 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=17.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCccccC
Q 040261 317 KEIEGALSLYSEMLSKGIRPTVVTYN 342 (343)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~p~~~t~~ 342 (343)
|-.++.+.+|++|..+.+.|....||
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~ 31 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWN 31 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeee
Confidence 34456677777777777777776665
No 493
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.00 E-value=1.2e+02 Score=20.00 Aligned_cols=61 Identities=8% Similarity=0.059 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHHcC
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR--VSPGFVVLGRILRSC 82 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 82 (343)
...++.-|...++.++|...+.++.... -.......++..+...++ .+....++..+.+.+
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 3456667778899999999888764311 122233444444443322 223445555555544
No 494
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=37.84 E-value=1.1e+02 Score=19.40 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=15.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 040261 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294 (343)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (343)
+|+-....|+..|+.+|..++....-.=-++...++++.|
T Consensus 30 L~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 30 LYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3333333344444444444443333333333333333333
No 495
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.57 E-value=2e+02 Score=22.54 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 040261 106 AAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151 (343)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (343)
-.++.+-....++.-+.....+++ +...|+..+|+.-++.-...
T Consensus 178 L~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g 221 (333)
T KOG0991|consen 178 LKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNG 221 (333)
T ss_pred HHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhcc
Confidence 334444444455555554444443 45678888888877766554
No 496
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.89 E-value=2e+02 Score=22.27 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=46.1
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC
Q 040261 99 AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (343)
..+++++|.+.+..- .+.|+ .-..++.++...|+...|+.+++...... .+......++.. ..++.
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--------~s~~~~~~~~~~-La~~~ 155 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--------SSPEALTLYFVA-LANGL 155 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--------CCHHHHHHHHHH-HHcCC
Confidence 345666666655221 11111 12246666666777777777776643211 112222222333 55567
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 040261 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFC 209 (343)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (343)
+.+|..+-+...+.. ....+..++..+.
T Consensus 156 v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 156 VTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 777776665554421 1334555555544
No 497
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=36.87 E-value=3.4e+02 Score=24.95 Aligned_cols=185 Identities=16% Similarity=0.139 Sum_probs=103.3
Q ss_pred HHHHHhcCCCCCCh--hhHHHHHHHHH-hcCChhHHHHHHHHhHhCCCCCCHH-----HHHHHHHHHHhcCCcchHHHHH
Q 040261 4 FDYMLRMHPSPPPV--CSFNILFGCLA-KNKHYDTVLSLFKRLNSIGLFPDLY-----TYNILINCFCKMGRVSPGFVVL 75 (343)
Q Consensus 4 ~~~m~~~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~ 75 (343)
++.+.+....||.. .++-.+...+. ...++++|...+++.....-.++.. ....++..+.+.+... |...+
T Consensus 44 L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l 122 (608)
T PF10345_consen 44 LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNL 122 (608)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence 44455433333433 34555667666 6789999999999875433223222 2334566666666655 98888
Q ss_pred HHHHHcCCC----ccHHHHHHH-HHHHhhcCcHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHH--hcCChHHHHHHH
Q 040261 76 GRILRSCFT----PDAVTFTSL-IKGLCAESRIMEAAALFTKLRAFG---CKPDVFTYTTLINGLC--RTGHTIVALNLF 145 (343)
Q Consensus 76 ~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~ 145 (343)
++.++.--. +-...|..+ +..+...+++..|.+.++.+...- ..|....+..++.+.. +.+..+.+.+.+
T Consensus 123 ~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 123 DKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 887764211 122233333 223333479999999998877542 2334444545555443 445566777777
Q ss_pred HHHHccCCCC---CccccCCcchHHHHHHHH--HhcCChHHHHHHHHHh
Q 040261 146 EEMANGNGEF---GVVCKPDAITYSTITDGL--CKEGFVDKAKELFLKM 189 (343)
Q Consensus 146 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 189 (343)
+++....... +....|...+|..++..+ ...|+++.+...++.+
T Consensus 203 ~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 203 QRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7663322110 000234456677776654 4677777776666554
No 498
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.66 E-value=4.5e+02 Score=26.32 Aligned_cols=128 Identities=11% Similarity=0.037 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH
Q 040261 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203 (343)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (343)
-|..+++.+-+.+..+.+.++-..+.+.-++. .+.-..+++.+.+.....|.+-+|...+-..... .........
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd---~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRq 1059 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDD---NPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---chhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHH
Confidence 35667788888888888888877776654221 1112345566666667777777776555332211 111233455
Q ss_pred HHHHHhccCcHH------------HHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 040261 204 LIRGFCYANDWN------------EAKC-LFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLL 256 (343)
Q Consensus 204 l~~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (343)
++..++..|.++ +... +++..-+.........|+.|-..+...+++.+|-.+.
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 555555555543 3333 2332222222223345555555666777777765543
No 499
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=36.40 E-value=86 Score=19.30 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=6.4
Q ss_pred HHHHHHhCCCCCCc
Q 040261 325 LYSEMLSKGIRPTV 338 (343)
Q Consensus 325 ~~~~~~~~~~~p~~ 338 (343)
+++-+.+.|..|+.
T Consensus 74 ~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 74 IVKLLLEHGADVNI 87 (89)
T ss_dssp HHHHHHHTTT-TTS
T ss_pred HHHHHHHcCCCCCC
Confidence 44444555555553
No 500
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.14 E-value=3.5e+02 Score=24.91 Aligned_cols=96 Identities=9% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHH------HHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcccc
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFT------YTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 160 (343)
...|+..-+.+ +..++..+.+.|..-... +..|... ...+--+|....+.+.|.+++++..+.+ +
T Consensus 355 ~iLWn~A~~~F-~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLF-KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------R 425 (872)
T ss_pred HHHHHhhHHHH-HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------c
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040261 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKD 191 (343)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (343)
.++.+-..+..+....|..++|+.+...+..
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Done!