Query 040261
Match_columns 343
No_of_seqs 608 out of 1470
Neff 12.2
Searched_HMMs 29240
Date Mon Mar 25 10:26:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 9.3E-34 3.2E-38 238.8 22.2 203 3-211 12-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 2E-33 6.7E-38 236.8 24.2 205 71-281 9-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 2.2E-31 7.5E-36 232.8 32.4 298 24-337 279-582 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1E-30 3.5E-35 228.6 33.7 308 15-333 148-546 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 9E-28 3.1E-32 198.9 39.4 317 4-338 56-372 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-27 1.5E-31 194.7 36.2 318 2-337 20-337 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 4.8E-26 1.6E-30 192.2 35.3 308 15-338 24-362 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 5.3E-24 1.8E-28 179.7 35.4 311 2-329 47-406 (450)
9 3ieg_A DNAJ homolog subfamily 99.9 3.9E-23 1.3E-27 169.0 37.5 308 16-338 2-339 (359)
10 2gw1_A Mitochondrial precursor 99.9 6E-23 2E-27 176.2 33.1 232 89-332 239-478 (514)
11 3hym_B Cell division cycle pro 99.9 1.6E-22 5.6E-27 163.4 31.5 293 15-320 20-322 (330)
12 2gw1_A Mitochondrial precursor 99.9 1.9E-22 6.4E-27 173.1 31.0 309 16-332 5-401 (514)
13 3ieg_A DNAJ homolog subfamily 99.9 4.3E-21 1.5E-25 156.9 35.5 299 2-315 24-352 (359)
14 3fp2_A TPR repeat-containing p 99.9 2E-21 6.7E-26 167.7 33.6 317 2-333 46-492 (537)
15 3hym_B Cell division cycle pro 99.9 1.2E-21 4.2E-26 158.3 29.1 277 48-338 18-303 (330)
16 1fch_A Peroxisomal targeting s 99.9 6.4E-22 2.2E-26 162.5 25.5 293 26-329 34-356 (368)
17 3fp2_A TPR repeat-containing p 99.9 1.1E-20 3.6E-25 163.2 31.8 303 16-333 24-408 (537)
18 4eqf_A PEX5-related protein; a 99.9 6.9E-22 2.4E-26 162.2 22.1 267 51-328 64-352 (365)
19 4eqf_A PEX5-related protein; a 99.9 2.7E-21 9.3E-26 158.6 22.8 270 15-293 63-352 (365)
20 1fch_A Peroxisomal targeting s 99.9 7.5E-21 2.6E-25 156.1 25.3 267 16-293 63-355 (368)
21 3cv0_A Peroxisome targeting si 99.9 3.4E-20 1.2E-24 149.6 26.4 262 57-330 26-313 (327)
22 3cv0_A Peroxisome targeting si 99.9 2.1E-20 7.2E-25 150.9 24.4 268 16-295 20-313 (327)
23 3mkr_A Coatomer subunit epsilo 99.9 8.3E-19 2.9E-23 138.5 27.3 276 24-326 6-288 (291)
24 3mkr_A Coatomer subunit epsilo 99.8 1.2E-18 4E-23 137.7 24.9 257 60-338 7-268 (291)
25 2xm6_A Protein corresponding t 99.8 3.8E-16 1.3E-20 133.0 38.9 288 16-333 38-397 (490)
26 2xm6_A Protein corresponding t 99.8 4.8E-16 1.6E-20 132.4 39.5 290 16-335 110-435 (490)
27 3uq3_A Heat shock protein STI1 99.8 1.2E-17 4E-22 130.0 23.1 225 17-261 5-235 (258)
28 3uq3_A Heat shock protein STI1 99.8 3.4E-17 1.2E-21 127.3 24.2 233 86-332 4-236 (258)
29 3spa_A Mtrpol, DNA-directed RN 99.8 4.2E-20 1.4E-24 161.4 8.3 153 18-177 128-286 (1134)
30 1b89_A Protein (clathrin heavy 99.8 5.8E-19 2E-23 142.8 14.3 267 16-326 31-305 (449)
31 2ooe_A Cleavage stimulation fa 99.8 3E-15 1E-19 128.8 37.8 188 135-332 292-492 (530)
32 3spa_A Mtrpol, DNA-directed RN 99.8 2.3E-19 7.9E-24 156.8 12.0 116 198-313 127-246 (1134)
33 2pl2_A Hypothetical conserved 99.8 2E-17 6.7E-22 125.1 21.3 198 14-223 2-210 (217)
34 4g1t_A Interferon-induced prot 99.8 1.1E-16 3.9E-21 135.8 28.3 318 13-341 90-469 (472)
35 2pl2_A Hypothetical conserved 99.8 2.3E-17 7.8E-22 124.7 21.1 198 84-293 2-210 (217)
36 1ouv_A Conserved hypothetical 99.8 9.4E-16 3.2E-20 120.3 30.1 225 15-263 4-252 (273)
37 2h6f_A Protein farnesyltransfe 99.8 6.2E-17 2.1E-21 132.1 23.4 217 17-246 97-322 (382)
38 4g1t_A Interferon-induced prot 99.8 1.2E-15 4.2E-20 129.4 32.3 307 15-332 49-401 (472)
39 3u4t_A TPR repeat-containing p 99.8 1.3E-16 4.5E-21 125.1 23.0 244 56-310 7-262 (272)
40 3u4t_A TPR repeat-containing p 99.8 4.3E-16 1.5E-20 122.2 25.4 247 17-274 3-261 (272)
41 1b89_A Protein (clathrin heavy 99.8 4.9E-18 1.7E-22 137.5 13.7 248 18-316 7-254 (449)
42 2h6f_A Protein farnesyltransfe 99.8 5.1E-16 1.8E-20 126.7 25.2 249 52-314 97-364 (382)
43 2ho1_A Type 4 fimbrial biogene 99.8 1.1E-15 3.6E-20 118.5 25.3 203 52-263 37-239 (252)
44 1xnf_A Lipoprotein NLPI; TPR, 99.8 8.6E-17 2.9E-21 126.4 19.3 245 66-326 19-269 (275)
45 1ouv_A Conserved hypothetical 99.8 8.1E-15 2.8E-19 115.0 30.5 224 51-298 5-252 (273)
46 2vq2_A PILW, putative fimbrial 99.8 9.3E-16 3.2E-20 116.6 24.3 204 15-227 6-211 (225)
47 2ho1_A Type 4 fimbrial biogene 99.8 3.3E-15 1.1E-19 115.7 26.5 201 87-297 37-238 (252)
48 2vq2_A PILW, putative fimbrial 99.7 2.8E-15 9.6E-20 113.9 25.1 200 87-296 8-210 (225)
49 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.5E-16 8.7E-21 123.7 19.4 249 27-291 15-269 (275)
50 2q7f_A YRRB protein; TPR, prot 99.7 4.3E-16 1.5E-20 120.0 20.1 197 90-297 26-222 (243)
51 2q7f_A YRRB protein; TPR, prot 99.7 5.1E-16 1.7E-20 119.6 20.1 199 54-263 25-223 (243)
52 3sf4_A G-protein-signaling mod 99.7 2.8E-16 9.5E-21 130.6 18.9 304 15-320 7-364 (406)
53 4a1s_A PINS, partner of inscut 99.7 7.2E-16 2.5E-20 128.4 18.8 278 53-332 49-372 (411)
54 3ulq_A Response regulator aspa 99.7 6.7E-15 2.3E-19 121.4 24.4 301 27-332 22-368 (383)
55 3sf4_A G-protein-signaling mod 99.7 1.1E-15 3.7E-20 127.0 19.7 283 49-332 6-336 (406)
56 4a1s_A PINS, partner of inscut 99.7 1.1E-15 3.7E-20 127.4 19.1 279 17-297 48-372 (411)
57 2ond_A Cleavage stimulation fa 99.7 1.1E-13 3.9E-18 110.3 29.2 219 104-333 33-271 (308)
58 3ro2_A PINS homolog, G-protein 99.7 2.2E-15 7.4E-20 121.7 19.0 273 59-332 12-332 (338)
59 4abn_A Tetratricopeptide repea 99.7 1.1E-14 3.7E-19 123.2 21.3 212 102-326 83-315 (474)
60 2ond_A Cleavage stimulation fa 99.7 1.3E-13 4.4E-18 110.1 26.4 218 34-261 33-269 (308)
61 3ro2_A PINS homolog, G-protein 99.7 3.6E-15 1.2E-19 120.4 17.5 279 17-297 5-332 (338)
62 3vtx_A MAMA; tetratricopeptide 99.7 2.6E-14 8.8E-19 105.1 20.5 168 15-192 3-170 (184)
63 1xi4_A Clathrin heavy chain; a 99.7 2.6E-13 9E-18 123.1 29.6 253 23-330 1055-1307(1630)
64 3q15_A PSP28, response regulat 99.6 2.4E-13 8.2E-18 111.8 25.3 314 15-331 8-364 (378)
65 3vtx_A MAMA; tetratricopeptide 99.6 1.5E-13 5.2E-18 100.9 21.5 165 122-296 5-169 (184)
66 4abn_A Tetratricopeptide repea 99.6 2.6E-14 8.8E-19 120.9 19.5 213 33-257 84-316 (474)
67 3nf1_A KLC 1, kinesin light ch 99.6 9.1E-15 3.1E-19 116.8 15.7 246 86-332 26-307 (311)
68 3nf1_A KLC 1, kinesin light ch 99.6 1.6E-15 5.5E-20 121.3 10.4 177 15-191 25-223 (311)
69 1xi4_A Clathrin heavy chain; a 99.6 3.2E-12 1.1E-16 116.2 32.2 266 15-324 1103-1376(1630)
70 3e4b_A ALGK; tetratricopeptide 99.6 9.6E-13 3.3E-17 110.6 26.8 220 89-334 143-389 (452)
71 2ooe_A Cleavage stimulation fa 99.6 4.8E-12 1.7E-16 108.9 30.4 218 70-297 256-492 (530)
72 3e4b_A ALGK; tetratricopeptide 99.6 1.4E-13 4.7E-18 115.7 19.8 286 23-334 9-353 (452)
73 4gyw_A UDP-N-acetylglucosamine 99.6 8.1E-14 2.8E-18 122.6 18.6 169 13-191 5-173 (723)
74 3ulq_A Response regulator aspa 99.6 3E-13 1E-17 111.5 21.1 235 58-296 109-367 (383)
75 1hz4_A MALT regulatory protein 99.6 2.3E-12 7.8E-17 105.8 25.4 276 19-296 16-321 (373)
76 1hz4_A MALT regulatory protein 99.6 4.3E-12 1.5E-16 104.2 25.3 277 55-331 17-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.5 1.2E-12 4.2E-17 95.9 19.1 167 16-192 7-173 (186)
78 4i17_A Hypothetical protein; T 99.5 1.8E-12 6.1E-17 98.7 20.6 208 14-239 4-220 (228)
79 3as5_A MAMA; tetratricopeptide 99.5 2.2E-12 7.4E-17 94.6 19.7 167 163-333 8-174 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.5 9.9E-13 3.4E-17 115.7 19.8 169 159-331 5-173 (723)
81 4i17_A Hypothetical protein; T 99.5 9.7E-12 3.3E-16 94.6 21.3 208 50-276 5-222 (228)
82 3edt_B KLC 2, kinesin light ch 99.5 1.5E-12 5.2E-17 102.3 14.6 200 133-332 12-281 (283)
83 3q15_A PSP28, response regulat 99.5 1.2E-11 4.1E-16 101.7 20.2 230 22-261 106-364 (378)
84 3edt_B KLC 2, kinesin light ch 99.4 1.8E-12 6.1E-17 101.9 13.8 234 28-262 12-281 (283)
85 3mv2_B Coatomer subunit epsilo 99.4 3E-10 1E-14 88.4 25.3 249 24-303 20-286 (310)
86 4e6h_A MRNA 3'-END-processing 99.4 2.9E-09 1E-13 92.9 31.4 205 121-333 342-571 (679)
87 3qky_A Outer membrane assembly 99.4 6.4E-11 2.2E-15 92.0 18.6 174 14-193 12-225 (261)
88 2pzi_A Probable serine/threoni 99.4 2.2E-11 7.6E-16 107.5 16.6 174 28-213 402-583 (681)
89 2fo7_A Synthetic consensus TPR 99.4 1.4E-10 4.9E-15 79.9 17.0 129 201-332 4-132 (136)
90 3mv2_B Coatomer subunit epsilo 99.3 5.3E-10 1.8E-14 87.0 21.1 245 61-337 22-285 (310)
91 3dra_A Protein farnesyltransfe 99.3 7E-09 2.4E-13 81.5 27.2 237 62-309 42-299 (306)
92 4e6h_A MRNA 3'-END-processing 99.3 1.6E-08 5.5E-13 88.3 32.1 164 167-333 347-534 (679)
93 3qky_A Outer membrane assembly 99.3 3.2E-10 1.1E-14 88.1 19.3 186 86-297 14-224 (261)
94 2fo7_A Synthetic consensus TPR 99.3 2.1E-10 7.3E-15 79.0 16.4 132 18-152 2-133 (136)
95 3urz_A Uncharacterized protein 99.3 1.6E-10 5.5E-15 86.4 16.6 190 16-238 3-195 (208)
96 3urz_A Uncharacterized protein 99.3 2E-10 6.9E-15 85.9 17.1 139 126-276 58-198 (208)
97 3dra_A Protein farnesyltransfe 99.3 3.5E-09 1.2E-13 83.2 24.5 235 29-275 45-300 (306)
98 1qqe_A Vesicular transport pro 99.3 4.2E-10 1.4E-14 88.9 19.7 201 18-225 38-267 (292)
99 2pzi_A Probable serine/threoni 99.3 7.1E-11 2.4E-15 104.3 16.0 173 133-318 402-583 (681)
100 3rjv_A Putative SEL1 repeat pr 99.3 1.5E-09 5E-14 81.4 20.8 175 71-263 5-198 (212)
101 3rjv_A Putative SEL1 repeat pr 99.3 1E-09 3.5E-14 82.3 19.9 177 140-334 4-199 (212)
102 2r5s_A Uncharacterized protein 99.3 7.7E-11 2.6E-15 85.7 13.0 167 16-191 5-172 (176)
103 4ga2_A E3 SUMO-protein ligase 99.3 2.3E-11 7.9E-16 85.8 9.7 146 23-178 3-149 (150)
104 1qqe_A Vesicular transport pro 99.3 5E-10 1.7E-14 88.5 18.4 180 32-227 32-228 (292)
105 3qou_A Protein YBBN; thioredox 99.3 1.9E-10 6.3E-15 90.6 15.0 165 16-189 116-281 (287)
106 2r5s_A Uncharacterized protein 99.2 2.8E-10 9.5E-15 82.7 14.3 165 163-331 6-172 (176)
107 2yhc_A BAMD, UPF0169 lipoprote 99.2 2E-09 6.7E-14 81.6 19.5 187 16-227 3-213 (225)
108 4ga2_A E3 SUMO-protein ligase 99.2 1.4E-10 4.7E-15 81.8 11.5 112 174-288 8-119 (150)
109 3qou_A Protein YBBN; thioredox 99.2 7.5E-10 2.6E-14 87.2 15.8 158 168-329 122-281 (287)
110 2vsy_A XCC0866; transferase, g 99.2 6.5E-10 2.2E-14 96.5 16.6 153 31-193 3-158 (568)
111 2yhc_A BAMD, UPF0169 lipoprote 99.2 4.6E-09 1.6E-13 79.5 19.2 186 51-263 3-214 (225)
112 2vsy_A XCC0866; transferase, g 99.2 1.3E-09 4.6E-14 94.5 17.7 131 164-297 24-157 (568)
113 3q7a_A Farnesyltransferase alp 99.1 1.8E-07 6E-12 74.4 26.1 224 63-297 65-331 (349)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 6.8E-09 2.3E-13 82.6 17.3 229 64-324 3-253 (307)
115 4gco_A Protein STI-1; structur 99.1 1.8E-09 6.1E-14 73.5 12.1 113 14-129 10-122 (126)
116 3q7a_A Farnesyltransferase alp 99.1 1E-07 3.5E-12 75.7 23.6 246 19-275 56-344 (349)
117 2uy1_A Cleavage stimulation fa 99.1 6.5E-07 2.2E-11 75.8 30.0 296 16-331 14-412 (493)
118 3u3w_A Transcriptional activat 99.1 8.1E-08 2.8E-12 75.8 21.9 165 127-296 80-265 (293)
119 3u3w_A Transcriptional activat 99.1 1.1E-07 3.7E-12 75.1 21.9 165 167-331 79-265 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.9E-08 1.3E-12 73.6 18.2 128 165-298 8-151 (213)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.7E-08 1.3E-12 73.7 17.7 133 56-193 10-151 (213)
122 1a17_A Serine/threonine protei 99.0 3E-08 1E-12 70.9 16.3 128 200-330 15-144 (166)
123 2c2l_A CHIP, carboxy terminus 99.0 3.2E-09 1.1E-13 83.3 11.8 196 14-226 1-198 (281)
124 1a17_A Serine/threonine protei 99.0 2.2E-08 7.7E-13 71.6 15.2 131 17-150 13-145 (166)
125 2ifu_A Gamma-SNAP; membrane fu 99.0 2.1E-08 7.3E-13 79.7 16.3 131 19-150 38-183 (307)
126 1na0_A Designed protein CTPR3; 99.0 3E-08 1E-12 67.0 14.9 115 17-134 9-123 (125)
127 3gyz_A Chaperone protein IPGC; 99.0 3.6E-09 1.2E-13 74.2 10.2 99 16-116 35-133 (151)
128 2lni_A Stress-induced-phosphop 99.0 1.6E-08 5.4E-13 69.3 13.3 120 14-136 13-132 (133)
129 2qfc_A PLCR protein; TPR, HTH, 99.0 2.2E-07 7.6E-12 73.3 21.2 170 124-294 77-263 (293)
130 2vyi_A SGTA protein; chaperone 99.0 1.5E-08 5.2E-13 69.1 12.7 121 15-138 10-130 (131)
131 2qfc_A PLCR protein; TPR, HTH, 99.0 3E-07 1E-11 72.6 21.5 168 88-260 76-264 (293)
132 2c2l_A CHIP, carboxy terminus 99.0 6.9E-09 2.4E-13 81.3 11.8 194 51-261 3-198 (281)
133 4gco_A Protein STI-1; structur 99.0 2.9E-08 9.9E-13 67.4 13.4 102 49-152 9-111 (126)
134 4f3v_A ESX-1 secretion system 99.0 1.4E-08 4.7E-13 78.1 12.7 203 99-307 18-245 (282)
135 3gyz_A Chaperone protein IPGC; 98.9 2.5E-08 8.5E-13 69.9 12.5 98 87-192 36-133 (151)
136 3dss_A Geranylgeranyl transfer 98.9 7.2E-06 2.5E-10 64.9 27.6 177 17-204 26-233 (331)
137 2vyi_A SGTA protein; chaperone 98.9 4.5E-08 1.5E-12 66.7 13.6 118 198-318 12-129 (131)
138 1na0_A Designed protein CTPR3; 98.9 1E-07 3.5E-12 64.3 15.3 96 200-297 11-106 (125)
139 2e2e_A Formate-dependent nitri 98.9 1.6E-08 5.6E-13 73.3 11.7 123 27-152 20-145 (177)
140 2lni_A Stress-induced-phosphop 98.9 7.1E-08 2.4E-12 66.0 14.4 120 49-177 13-132 (133)
141 2vgx_A Chaperone SYCD; alterna 98.9 2.2E-08 7.4E-13 70.2 11.8 110 4-117 10-119 (148)
142 3gw4_A Uncharacterized protein 98.9 2.7E-08 9.1E-13 73.8 12.9 157 174-331 3-175 (203)
143 2e2e_A Formate-dependent nitri 98.9 4.5E-08 1.5E-12 71.0 13.6 122 63-193 21-145 (177)
144 1p5q_A FKBP52, FK506-binding p 98.9 2.2E-08 7.5E-13 80.6 12.7 132 16-149 146-292 (336)
145 3upv_A Heat shock protein STI1 98.9 4.4E-08 1.5E-12 66.6 12.5 101 15-117 2-102 (126)
146 4f3v_A ESX-1 secretion system 98.9 2E-07 6.9E-12 71.6 17.1 187 29-227 18-237 (282)
147 1p5q_A FKBP52, FK506-binding p 98.9 7.4E-08 2.5E-12 77.6 15.4 87 234-322 197-283 (336)
148 3gw4_A Uncharacterized protein 98.9 3E-08 1E-12 73.5 12.2 161 99-261 4-175 (203)
149 2vgx_A Chaperone SYCD; alterna 98.9 1.5E-08 5.2E-13 71.0 9.6 111 184-297 8-118 (148)
150 2fbn_A 70 kDa peptidylprolyl i 98.9 5E-09 1.7E-13 77.6 7.0 153 22-183 9-176 (198)
151 2kck_A TPR repeat; tetratricop 98.8 7.5E-08 2.6E-12 63.6 11.9 103 14-118 3-108 (112)
152 3dss_A Geranylgeranyl transfer 98.8 2.1E-05 7.2E-10 62.3 27.9 224 61-297 38-304 (331)
153 4gcn_A Protein STI-1; structur 98.8 1.3E-07 4.4E-12 64.3 12.5 107 17-126 8-120 (127)
154 2xcb_A PCRH, regulatory protei 98.8 3.6E-08 1.2E-12 68.6 9.8 100 15-116 16-115 (142)
155 1elw_A TPR1-domain of HOP; HOP 98.8 3.1E-07 1.1E-11 61.1 14.2 111 16-129 3-113 (118)
156 2uy1_A Cleavage stimulation fa 98.8 1.5E-05 5.3E-10 67.5 26.8 125 164-296 287-412 (493)
157 2xcb_A PCRH, regulatory protei 98.8 6.9E-08 2.4E-12 67.2 10.5 100 51-152 17-116 (142)
158 2kck_A TPR repeat; tetratricop 98.8 2E-07 6.9E-12 61.5 12.2 97 234-332 7-106 (112)
159 2dba_A Smooth muscle cell asso 98.8 6.3E-07 2.1E-11 62.5 15.0 113 14-130 25-141 (148)
160 1elr_A TPR2A-domain of HOP; HO 98.8 8.9E-08 3E-12 65.2 10.3 113 16-131 3-121 (131)
161 3upv_A Heat shock protein STI1 98.8 4.8E-07 1.7E-11 61.3 13.8 95 200-296 6-100 (126)
162 1elw_A TPR1-domain of HOP; HOP 98.8 7.7E-07 2.6E-11 59.2 14.7 97 199-297 5-101 (118)
163 3q49_B STIP1 homology and U bo 98.7 3.2E-07 1.1E-11 63.2 12.9 100 15-116 7-106 (137)
164 3q49_B STIP1 homology and U bo 98.7 5.9E-07 2E-11 61.8 13.7 100 196-297 7-106 (137)
165 3sz7_A HSC70 cochaperone (SGT) 98.7 2.7E-07 9.3E-12 65.9 12.3 101 15-117 9-109 (164)
166 2fbn_A 70 kDa peptidylprolyl i 98.7 4.2E-07 1.4E-11 67.1 13.6 98 234-333 89-187 (198)
167 4gcn_A Protein STI-1; structur 98.7 2.2E-07 7.5E-12 63.1 10.9 113 87-202 8-120 (127)
168 4b4t_Q 26S proteasome regulato 98.7 3.5E-06 1.2E-10 70.4 20.1 203 129-331 11-244 (434)
169 3sz7_A HSC70 cochaperone (SGT) 98.7 4.2E-07 1.4E-11 64.9 12.3 101 50-152 9-109 (164)
170 1hxi_A PEX5, peroxisome target 98.7 4.4E-07 1.5E-11 61.0 11.7 93 237-331 21-113 (121)
171 1elr_A TPR2A-domain of HOP; HO 98.7 4.7E-07 1.6E-11 61.5 11.8 108 200-310 6-119 (131)
172 1hxi_A PEX5, peroxisome target 98.7 3.5E-07 1.2E-11 61.5 10.8 96 19-116 19-114 (121)
173 4b4t_Q 26S proteasome regulato 98.7 1.8E-06 6.1E-11 72.2 17.2 22 60-81 12-33 (434)
174 2dba_A Smooth muscle cell asso 98.6 1.9E-06 6.7E-11 59.9 14.2 100 50-152 26-129 (148)
175 1wao_1 Serine/threonine protei 98.6 9.5E-08 3.2E-12 80.7 8.4 126 18-146 7-134 (477)
176 2xev_A YBGF; tetratricopeptide 98.6 3.6E-06 1.2E-10 57.1 13.9 97 19-117 4-106 (129)
177 3ro3_A PINS homolog, G-protein 98.5 1E-06 3.6E-11 62.3 11.0 132 201-332 12-158 (164)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 9.3E-07 3.2E-11 74.3 12.1 130 16-148 267-412 (457)
179 1wao_1 Serine/threonine protei 98.5 6.3E-07 2.2E-11 75.7 10.8 119 206-327 14-134 (477)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 2.8E-06 9.6E-11 71.4 14.6 150 32-190 249-413 (457)
181 3ro3_A PINS homolog, G-protein 98.5 1.2E-06 4.1E-11 62.0 10.2 135 17-151 9-158 (164)
182 3rkv_A Putative peptidylprolyl 98.5 2.5E-06 8.5E-11 60.6 11.7 100 16-116 10-126 (162)
183 1ihg_A Cyclophilin 40; ppiase 98.5 1.8E-06 6.3E-11 70.3 12.3 124 18-143 224-362 (370)
184 2xev_A YBGF; tetratricopeptide 98.5 8.6E-06 2.9E-10 55.2 14.0 92 204-297 8-105 (129)
185 3k9i_A BH0479 protein; putativ 98.5 5.7E-07 1.9E-11 60.1 7.6 85 30-115 3-89 (117)
186 3k9i_A BH0479 protein; putativ 98.5 8.2E-07 2.8E-11 59.3 8.2 106 64-175 2-109 (117)
187 1dce_A Protein (RAB geranylger 98.5 3.9E-05 1.3E-09 66.1 20.1 172 69-251 46-244 (567)
188 2if4_A ATFKBP42; FKBP-like, al 98.4 1.6E-06 5.6E-11 69.7 10.5 146 166-332 182-328 (338)
189 1dce_A Protein (RAB geranylger 98.4 3.4E-05 1.2E-09 66.5 19.1 174 31-215 43-243 (567)
190 1ihg_A Cyclophilin 40; ppiase 98.4 4E-06 1.4E-10 68.3 12.5 124 53-184 224-362 (370)
191 1klx_A Cysteine rich protein B 98.4 2.3E-05 7.9E-10 53.9 14.4 111 177-298 9-127 (138)
192 3rkv_A Putative peptidylprolyl 98.4 8.6E-06 3E-10 57.8 12.3 64 233-297 63-126 (162)
193 2hr2_A Hypothetical protein; a 98.4 6.6E-06 2.3E-10 57.2 11.0 61 18-80 12-85 (159)
194 2if4_A ATFKBP42; FKBP-like, al 98.4 1.9E-06 6.4E-11 69.4 9.5 133 16-152 178-329 (338)
195 1klx_A Cysteine rich protein B 98.3 5.8E-05 2E-09 51.8 14.7 113 211-334 8-128 (138)
196 2hr2_A Hypothetical protein; a 98.3 2E-05 6.7E-10 54.8 11.8 93 239-331 17-130 (159)
197 3n71_A Histone lysine methyltr 98.3 7.9E-06 2.7E-10 68.8 11.3 126 207-332 318-464 (490)
198 2l6j_A TPR repeat-containing p 98.2 2.3E-06 7.7E-11 56.3 5.6 93 232-327 3-102 (111)
199 3n71_A Histone lysine methyltr 98.2 1.3E-05 4.3E-10 67.6 10.5 131 131-261 318-463 (490)
200 1na3_A Designed protein CTPR2; 98.1 2.6E-05 8.8E-10 48.9 9.1 80 16-97 8-87 (91)
201 2kat_A Uncharacterized protein 98.1 3.6E-05 1.2E-09 50.9 9.9 80 216-297 3-82 (115)
202 2kat_A Uncharacterized protein 98.1 3.1E-05 1.1E-09 51.2 9.5 79 35-115 3-81 (115)
203 2l6j_A TPR repeat-containing p 98.1 3.7E-06 1.3E-10 55.2 4.9 64 87-151 4-67 (111)
204 1zu2_A Mitochondrial import re 98.1 2E-05 7E-10 54.6 8.6 100 27-130 12-132 (158)
205 1na3_A Designed protein CTPR2; 98.0 9.1E-05 3.1E-09 46.3 10.5 79 234-314 10-88 (91)
206 3ma5_A Tetratricopeptide repea 98.0 3.8E-05 1.3E-09 49.4 7.8 66 14-80 4-69 (100)
207 1zu2_A Mitochondrial import re 97.9 6.4E-05 2.2E-09 52.1 8.3 96 212-311 16-132 (158)
208 3ma5_A Tetratricopeptide repea 97.8 9.8E-05 3.4E-09 47.4 7.4 63 51-114 6-68 (100)
209 3ly7_A Transcriptional activat 97.7 0.002 6.8E-08 51.5 15.1 134 15-152 192-340 (372)
210 3ly7_A Transcriptional activat 97.6 0.0023 8E-08 51.1 14.1 65 196-262 275-339 (372)
211 2kc7_A BFR218_protein; tetratr 97.5 0.00029 9.9E-09 44.9 6.0 59 23-82 6-65 (99)
212 2kc7_A BFR218_protein; tetratr 97.4 0.00033 1.1E-08 44.6 5.9 57 240-297 7-64 (99)
213 3qww_A SET and MYND domain-con 97.4 0.00061 2.1E-08 56.4 8.7 87 245-331 310-410 (433)
214 3qww_A SET and MYND domain-con 97.4 0.00074 2.5E-08 55.9 8.6 88 209-296 309-410 (433)
215 1pc2_A Mitochondria fission pr 97.4 0.002 6.7E-08 44.2 9.2 84 212-297 12-100 (152)
216 3bee_A Putative YFRE protein; 97.3 0.0029 1E-07 39.7 9.3 68 230-298 3-73 (93)
217 3bee_A Putative YFRE protein; 97.3 0.0018 6.1E-08 40.7 8.2 66 15-81 4-72 (93)
218 3qwp_A SET and MYND domain-con 97.3 0.0018 6E-08 53.7 10.0 89 242-330 296-398 (429)
219 3mkq_A Coatomer beta'-subunit; 97.3 0.0038 1.3E-07 56.6 13.2 154 25-223 607-761 (814)
220 3qwp_A SET and MYND domain-con 97.3 0.0029 9.8E-08 52.5 10.9 99 128-226 293-399 (429)
221 3u64_A Protein TP_0956; tetrat 97.2 0.015 5.2E-07 44.6 13.2 83 214-298 179-270 (301)
222 1pc2_A Mitochondria fission pr 97.0 0.012 3.9E-07 40.5 10.0 82 33-116 14-100 (152)
223 3mkq_A Coatomer beta'-subunit; 97.0 0.023 7.8E-07 51.5 15.0 134 17-189 629-762 (814)
224 3mkq_B Coatomer subunit alpha; 97.0 0.052 1.8E-06 38.3 15.2 99 63-188 16-114 (177)
225 2v5f_A Prolyl 4-hydroxylase su 96.9 0.011 3.8E-07 37.9 9.2 67 15-81 3-75 (104)
226 3u64_A Protein TP_0956; tetrat 96.9 0.036 1.2E-06 42.6 12.8 93 179-273 179-282 (301)
227 2v5f_A Prolyl 4-hydroxylase su 96.9 0.02 6.8E-07 36.7 10.0 68 50-117 3-76 (104)
228 1nzn_A CGI-135 protein, fissio 96.8 0.02 6.7E-07 37.8 9.6 65 266-331 33-102 (126)
229 1wy6_A Hypothetical protein ST 96.8 0.052 1.8E-06 36.1 15.5 139 99-265 19-157 (172)
230 4h7y_A Dual specificity protei 96.8 0.055 1.9E-06 36.8 11.7 114 13-129 9-135 (161)
231 4h7y_A Dual specificity protei 96.6 0.025 8.6E-07 38.4 8.9 112 196-310 11-135 (161)
232 3lvg_A Clathrin heavy chain 1; 96.3 9.3E-07 3.2E-11 71.9 -16.0 209 16-245 53-275 (624)
233 3mkq_B Coatomer subunit alpha; 96.0 0.25 8.5E-06 34.9 16.1 131 23-189 11-141 (177)
234 1nzn_A CGI-135 protein, fissio 95.9 0.063 2.1E-06 35.4 8.0 84 32-116 16-103 (126)
235 3o48_A Mitochondria fission 1 95.5 0.3 1E-05 32.5 10.2 66 265-330 37-105 (134)
236 4gns_B Protein CSD3, chitin bi 95.5 0.18 6.3E-06 44.7 11.7 126 21-149 252-398 (754)
237 1wy6_A Hypothetical protein ST 95.3 0.36 1.2E-05 32.2 15.1 140 133-300 18-157 (172)
238 4ady_A RPN2, 26S proteasome re 95.3 1.7 5.9E-05 39.7 21.6 258 27-296 384-657 (963)
239 4ady_A RPN2, 26S proteasome re 95.2 1.8 6.2E-05 39.5 18.6 260 62-330 384-656 (963)
240 4b4t_P 26S proteasome regulato 95.2 1.2 3.9E-05 37.2 19.4 164 166-329 140-321 (445)
241 2ff4_A Probable regulatory pro 95.1 0.64 2.2E-05 37.9 13.3 67 238-305 176-247 (388)
242 3lvg_A Clathrin heavy chain 1; 95.1 3.2E-05 1.1E-09 63.2 -11.7 190 12-223 78-287 (624)
243 4fhn_B Nucleoporin NUP120; pro 95.0 1.3 4.4E-05 42.1 16.6 190 128-330 818-1048(1139)
244 4gns_B Protein CSD3, chitin bi 95.0 0.64 2.2E-05 41.4 13.5 125 202-329 252-397 (754)
245 4fhn_B Nucleoporin NUP120; pro 94.8 2.9 9.9E-05 39.7 18.3 134 124-261 901-1049(1139)
246 2ff4_A Probable regulatory pro 94.3 1.3 4.3E-05 36.2 13.0 72 201-273 174-250 (388)
247 4b4t_P 26S proteasome regulato 94.2 2.1 7.1E-05 35.7 17.6 96 201-296 140-246 (445)
248 1y8m_A FIS1; mitochondria, unk 94.2 0.56 1.9E-05 31.6 8.7 68 49-116 36-106 (144)
249 1v54_E Cytochrome C oxidase po 94.2 0.59 2E-05 29.2 8.7 63 178-241 25-87 (109)
250 3o48_A Mitochondria fission 1 93.9 0.3 1E-05 32.4 6.9 68 49-116 37-107 (134)
251 1qsa_A Protein (soluble lytic 93.8 3.1 0.00011 36.3 23.8 279 32-331 54-347 (618)
252 1v54_E Cytochrome C oxidase po 93.7 0.74 2.5E-05 28.8 8.3 63 248-311 25-87 (109)
253 1y8m_A FIS1; mitochondria, unk 93.7 1 3.5E-05 30.3 11.4 72 230-303 36-110 (144)
254 2y69_E Cytochrome C oxidase su 92.9 1.3 4.6E-05 29.3 8.7 60 181-241 71-130 (152)
255 2y69_E Cytochrome C oxidase su 92.6 1.5 5.2E-05 29.1 8.5 61 249-310 69-129 (152)
256 3ffl_A Anaphase-promoting comp 92.5 1.2 4.2E-05 30.9 8.4 65 16-80 19-91 (167)
257 4b4t_R RPN7, 26S proteasome re 89.7 5.3 0.00018 33.1 11.5 61 54-114 133-195 (429)
258 2wpv_A GET4, UPF0363 protein Y 89.2 6.8 0.00023 30.7 16.4 149 167-330 37-215 (312)
259 3lpz_A GET4 (YOR164C homolog); 88.5 7.9 0.00027 30.6 18.8 21 311-331 195-215 (336)
260 3ffl_A Anaphase-promoting comp 88.1 5 0.00017 27.9 9.3 24 272-295 126-149 (167)
261 4a1g_A Mitotic checkpoint seri 87.3 1.7 5.9E-05 29.7 5.8 56 33-88 81-137 (152)
262 2wpv_A GET4, UPF0363 protein Y 87.2 9.3 0.00032 29.9 19.7 25 232-256 133-157 (312)
263 1zbp_A Hypothetical protein VP 86.9 5.5 0.00019 30.3 8.8 117 25-152 5-130 (273)
264 4b4t_R RPN7, 26S proteasome re 86.8 10 0.00035 31.4 11.4 62 89-150 133-196 (429)
265 2wvi_A Mitotic checkpoint seri 85.3 2.5 8.7E-05 29.3 5.9 56 34-89 77-133 (164)
266 3esl_A Checkpoint serine/threo 85.2 8.7 0.0003 27.7 9.6 57 66-122 93-150 (202)
267 2uwj_G Type III export protein 84.3 5.6 0.00019 24.8 7.1 88 29-125 18-105 (115)
268 2p58_C Putative type III secre 83.8 6 0.00021 24.7 8.1 88 29-125 19-106 (116)
269 3txn_A 26S proteasome regulato 82.6 18 0.00063 29.4 22.9 166 89-261 21-209 (394)
270 3esl_A Checkpoint serine/threo 82.5 12 0.0004 27.1 10.0 57 211-267 92-149 (202)
271 3eiq_C Programmed cell death p 80.9 20 0.00068 28.7 10.9 66 201-267 220-287 (358)
272 4aez_C MAD3, mitotic spindle c 80.7 3.7 0.00013 30.2 5.5 67 19-87 118-185 (223)
273 3lpz_A GET4 (YOR164C homolog); 79.5 21 0.00073 28.2 22.0 25 232-256 135-159 (336)
274 1bpo_A Protein (clathrin); cla 79.3 26 0.0009 29.1 10.9 71 46-117 355-425 (494)
275 2zu6_B Programmed cell death p 77.9 11 0.00039 29.4 7.9 68 166-234 169-238 (307)
276 2uwj_G Type III export protein 77.2 11 0.00037 23.6 7.4 78 213-298 21-98 (115)
277 2p58_C Putative type III secre 76.3 12 0.0004 23.5 7.9 78 213-298 22-99 (116)
278 3txn_A 26S proteasome regulato 75.7 31 0.0011 28.1 23.7 168 18-190 20-208 (394)
279 3kea_A K1L; tropism, ANK repea 74.3 3.3 0.00011 31.9 4.1 41 62-106 38-78 (285)
280 4a1g_A Mitotic checkpoint seri 73.5 19 0.00065 24.6 9.6 53 69-121 82-135 (152)
281 1wdy_A 2-5A-dependent ribonucl 72.2 8.5 0.00029 29.2 6.0 88 244-339 190-282 (285)
282 2d2s_A Exocyst complex compone 72.1 28 0.00096 25.9 8.6 24 22-45 23-46 (235)
283 4b4t_S RPN3, 26S proteasome re 72.1 38 0.0013 28.8 9.8 25 54-78 233-257 (523)
284 1zbp_A Hypothetical protein VP 67.9 38 0.0013 25.8 14.0 54 62-116 7-60 (273)
285 1wdy_A 2-5A-dependent ribonucl 67.2 33 0.0011 25.8 8.4 214 22-257 7-240 (285)
286 4aez_C MAD3, mitotic spindle c 66.2 37 0.0013 25.0 8.7 54 68-121 130-184 (223)
287 2wvi_A Mitotic checkpoint seri 66.1 30 0.001 24.0 9.6 55 69-123 77-132 (164)
288 2d2s_A Exocyst complex compone 65.4 40 0.0014 25.1 8.9 90 169-261 24-119 (235)
289 2w57_A Ferric uptake regulatio 61.0 36 0.0012 23.1 6.7 35 67-101 32-66 (150)
290 1k1a_A B-cell lymphoma 3-encod 59.9 43 0.0015 24.4 7.6 26 24-49 13-38 (241)
291 3eyy_A Putative iron uptake re 59.8 37 0.0013 22.9 6.9 34 68-101 33-66 (145)
292 3jxi_A Vanilloid receptor-rela 57.4 14 0.00049 27.6 4.6 57 23-79 8-73 (260)
293 2xig_A Ferric uptake regulatio 57.2 42 0.0015 22.8 6.9 62 41-103 16-77 (150)
294 1bpo_A Protein (clathrin); cla 56.9 87 0.003 26.2 10.4 92 89-188 363-454 (494)
295 2fe3_A Peroxide operon regulat 56.8 42 0.0014 22.6 7.4 60 42-102 12-71 (145)
296 3kea_A K1L; tropism, ANK repea 56.4 64 0.0022 24.6 8.9 224 5-261 17-246 (285)
297 4gq2_M Nucleoporin NUP120; bet 56.0 1.3E+02 0.0043 28.2 11.1 49 234-282 898-950 (950)
298 1qsa_A Protein (soluble lytic 54.9 1.1E+02 0.0038 26.8 31.5 177 137-324 229-434 (618)
299 3hra_A Ankyrin repeat family p 54.8 24 0.00083 24.9 5.3 14 218-231 158-171 (201)
300 2ijq_A Hypothetical protein; s 54.4 51 0.0017 22.8 8.4 50 282-331 46-103 (161)
301 3kae_A CDC27, possible protein 53.9 52 0.0018 23.2 6.2 83 132-226 43-142 (242)
302 3bu8_A Telomeric repeat-bindin 53.7 62 0.0021 23.6 7.9 49 214-262 88-143 (235)
303 4ets_A Ferric uptake regulatio 53.7 50 0.0017 22.8 6.4 70 33-103 13-85 (162)
304 1mzb_A Ferric uptake regulatio 53.1 47 0.0016 22.0 6.9 57 44-101 10-67 (136)
305 2ijq_A Hypothetical protein; s 52.4 55 0.0019 22.6 7.5 50 177-226 46-103 (161)
306 3kae_A CDC27, possible protein 51.3 61 0.0021 22.8 6.5 59 20-84 35-94 (242)
307 3eyy_A Putative iron uptake re 50.5 55 0.0019 22.0 7.5 57 79-137 11-67 (145)
308 2b7e_A PRE-mRNA processing pro 50.3 18 0.00063 20.0 2.9 28 70-97 4-31 (59)
309 3hra_A Ankyrin repeat family p 49.8 57 0.002 22.8 6.7 81 24-110 9-92 (201)
310 4ets_A Ferric uptake regulatio 49.7 61 0.0021 22.4 7.0 70 70-140 15-87 (162)
311 3bu8_A Telomeric repeat-bindin 49.0 76 0.0026 23.2 11.3 22 95-116 122-143 (235)
312 1ug3_A EIF4GI, eukaryotic prot 48.5 1E+02 0.0034 24.5 8.8 66 166-232 14-80 (339)
313 2o03_A Probable zinc uptake re 47.4 47 0.0016 21.8 5.3 45 23-67 16-60 (131)
314 3mwm_A ZUR, putative metal upt 46.9 42 0.0014 22.4 5.1 47 21-67 17-63 (139)
315 3eu9_A Huntingtin-interacting 46.6 72 0.0025 23.0 7.0 17 25-41 14-30 (240)
316 2fe3_A Peroxide operon regulat 46.5 64 0.0022 21.7 8.8 62 77-139 12-73 (145)
317 3eu9_A Huntingtin-interacting 46.2 48 0.0016 24.0 5.9 17 242-258 216-232 (240)
318 2w57_A Ferric uptake regulatio 45.9 67 0.0023 21.7 7.7 60 78-138 8-68 (150)
319 1mzb_A Ferric uptake regulatio 45.7 63 0.0022 21.4 7.7 60 78-138 9-69 (136)
320 2r9g_A AAA ATPase, central reg 45.6 83 0.0028 22.7 10.1 84 174-258 25-113 (204)
321 3mwm_A ZUR, putative metal upt 45.3 60 0.002 21.6 5.6 42 95-136 21-62 (139)
322 4gq2_M Nucleoporin NUP120; bet 44.3 2E+02 0.0069 26.8 11.8 90 21-116 814-926 (950)
323 2o03_A Probable zinc uptake re 44.2 65 0.0022 21.1 6.0 39 62-100 20-58 (131)
324 3ygs_P Procaspase 9; apoptosis 43.3 57 0.0019 20.1 5.2 63 38-106 25-87 (97)
325 2qx5_A Nucleoporin NIC96; mRNA 43.3 1.8E+02 0.006 25.8 13.9 25 19-44 155-179 (661)
326 2f6m_A Suppressor protein STP2 42.4 46 0.0016 18.8 4.4 43 20-63 5-47 (65)
327 3pvs_A Replication-associated 42.2 1.5E+02 0.0051 24.7 14.5 55 245-299 267-326 (447)
328 3bge_A Predicted ATPase; struc 42.0 94 0.0032 22.3 8.4 55 174-228 18-77 (201)
329 3jxi_A Vanilloid receptor-rela 40.9 48 0.0016 24.6 5.2 56 59-114 9-73 (260)
330 1k1a_A B-cell lymphoma 3-encod 40.1 1E+02 0.0035 22.2 7.9 20 98-117 17-36 (241)
331 3pvs_A Replication-associated 39.8 1.6E+02 0.0056 24.4 15.2 46 104-151 168-221 (447)
332 1ug3_A EIF4GI, eukaryotic prot 38.8 1.5E+02 0.005 23.6 8.8 25 20-44 14-38 (339)
333 3ctd_A Putative ATPase, AAA fa 38.7 1.1E+02 0.0038 22.2 9.6 79 168-246 37-123 (213)
334 2ion_A PDCD4, programmed cell 38.2 93 0.0032 21.2 9.1 65 200-265 11-77 (152)
335 3eiq_C Programmed cell death p 37.5 1.6E+02 0.0054 23.6 14.1 95 235-330 219-319 (358)
336 4b4t_S RPN3, 26S proteasome re 36.8 2E+02 0.0068 24.6 10.9 66 17-82 231-300 (523)
337 4g8k_A 2-5A-dependent ribonucl 36.5 1.5E+02 0.0051 23.0 8.3 146 171-338 173-329 (337)
338 3f3f_C Nucleoporin NUP85; stru 36.2 1.5E+02 0.0052 25.5 7.6 70 70-141 499-568 (570)
339 2fu4_A Ferric uptake regulatio 35.9 66 0.0023 18.8 7.8 32 68-99 33-64 (83)
340 2xig_A Ferric uptake regulatio 35.7 1E+02 0.0035 20.8 8.8 62 77-139 17-78 (150)
341 3qil_A Clathrin heavy chain 1; 34.9 50 0.0017 21.5 3.6 49 20-71 35-83 (125)
342 2ion_A PDCD4, programmed cell 34.0 1.1E+02 0.0038 20.8 8.6 70 165-235 11-82 (152)
343 3l6a_A Eukaryotic translation 31.4 2E+02 0.007 23.1 12.2 62 19-84 14-80 (364)
344 2zu6_B Programmed cell death p 30.6 1.9E+02 0.0066 22.5 13.2 68 236-304 169-238 (307)
345 2keb_A DNA polymerase subunit 30.4 1E+02 0.0034 19.2 7.0 32 35-66 27-58 (101)
346 3ljn_A Hypothetical protein; a 30.4 2E+02 0.0068 22.6 9.0 218 16-258 17-266 (364)
347 2p1h_A APAF-1, apoptotic prote 29.9 95 0.0033 18.8 5.9 61 36-104 24-84 (94)
348 1ixm_A SPO0B, protein (sporula 29.8 1.1E+02 0.0038 21.8 5.2 71 248-329 14-84 (192)
349 3qye_A TBC1 domain family memb 29.0 1.5E+02 0.0052 23.2 6.5 75 254-328 209-287 (331)
350 3qil_A Clathrin heavy chain 1; 29.0 69 0.0024 20.9 3.5 53 235-290 34-86 (125)
351 2nsz_A Programmed cell death p 28.9 1.2E+02 0.0043 19.8 10.4 24 201-224 10-33 (129)
352 2p22_A Suppressor protein STP2 27.5 1E+02 0.0036 21.6 4.5 51 84-135 108-158 (174)
353 2r9g_A AAA ATPase, central reg 27.1 1.8E+02 0.0061 21.0 10.2 57 209-266 25-86 (204)
354 2rg8_A Programmed cell death p 25.9 1.2E+02 0.0042 21.0 4.7 26 166-191 13-38 (165)
355 1oai_A Nuclear RNA export fact 25.7 73 0.0025 17.5 2.8 21 317-337 34-55 (59)
356 2etb_A Transient receptor pote 25.6 2E+02 0.0068 21.1 7.6 57 23-80 5-71 (256)
357 2rg8_A Programmed cell death p 25.5 1.1E+02 0.0039 21.1 4.5 26 20-45 13-38 (165)
358 2yru_A Steroid receptor RNA ac 25.0 1.4E+02 0.0049 19.3 6.1 43 255-297 48-90 (118)
359 2p22_A Suppressor protein STP2 24.6 1.1E+02 0.0038 21.5 4.2 46 198-244 111-156 (174)
360 3bqo_A Telomeric repeat-bindin 23.5 1.8E+02 0.0063 20.9 5.1 25 128-152 123-147 (211)
361 3c1d_A Protein ORAA, regulator 23.0 1.9E+02 0.0063 19.8 12.6 100 213-317 45-144 (159)
362 3f3f_C Nucleoporin NUP85; stru 22.9 3.7E+02 0.013 23.3 8.6 68 107-182 501-568 (570)
363 3twr_A Tankyrase-2; ankyrin re 22.8 1.7E+02 0.0057 19.5 5.2 18 170-187 12-29 (165)
364 3e3v_A Regulatory protein RECX 22.8 2E+02 0.0069 20.1 11.2 113 215-330 50-164 (177)
365 3d5l_A Regulatory protein RECX 22.8 2.3E+02 0.0078 20.7 9.0 50 215-265 93-142 (221)
366 3ph0_C ASCG; type III secretio 22.7 1E+02 0.0035 16.8 4.2 15 31-45 20-34 (61)
367 3b7b_A Euchromatic histone-lys 22.5 1E+02 0.0035 22.3 4.2 19 313-331 217-235 (237)
368 4fjo_A DNA repair protein REV1 22.2 71 0.0024 19.8 2.7 24 18-41 34-57 (97)
369 3ctd_A Putative ATPase, AAA fa 21.5 2.4E+02 0.0082 20.6 9.5 58 209-266 46-108 (213)
370 1wgl_A TOLL-interacting protei 21.2 1.2E+02 0.0039 16.7 3.5 21 100-120 36-56 (59)
371 2crb_A Nuclear receptor bindin 20.1 1.6E+02 0.0056 18.0 4.4 23 271-293 18-40 (97)
372 2rfa_A Transient receptor pote 20.1 2.4E+02 0.0083 20.1 8.0 149 170-330 41-221 (232)
373 3bqo_A Telomeric repeat-bindin 20.0 1.8E+02 0.0062 21.0 4.5 25 57-81 122-146 (211)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.3e-34 Score=238.79 Aligned_cols=203 Identities=17% Similarity=0.246 Sum_probs=175.3
Q ss_pred hHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCC---------cchHHH
Q 040261 3 IFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR---------VSPGFV 73 (343)
Q Consensus 3 i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~ 73 (343)
++..+.+.+..+.+...++.+|+.|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++.|.+
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~ 91 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHH
Confidence 34556666665233446888999999999999999999999999999999999999999987665 567899
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 040261 74 VLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153 (343)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 153 (343)
+|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+
T Consensus 92 lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G- 170 (501)
T 4g26_A 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE- 170 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc
Q 040261 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211 (343)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (343)
+.|+..+|+.|+.+|++.|+.++|.++|++|.+.+..|+..||+.++..+...
T Consensus 171 -----~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 171 -----VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp -----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred -----CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999888764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2e-33 Score=236.82 Aligned_cols=205 Identities=14% Similarity=0.219 Sum_probs=177.3
Q ss_pred HHHHHHHHHHcCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------hHH
Q 040261 71 GFVVLGRILRSCFTPD-AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH---------TIV 140 (343)
Q Consensus 71 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 140 (343)
+..+.+++.+.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. .+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3444555555554433 345777888888888999999999998888888888899988888887654 678
Q ss_pred HHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHH
Q 040261 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCL 220 (343)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 220 (343)
|.++|++|...+ +.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 89 A~~lf~~M~~~G------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 89 GFDIFKQMIVDK------VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 999999999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 040261 221 FIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281 (343)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (343)
|++|.+.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-31 Score=232.85 Aligned_cols=298 Identities=10% Similarity=-0.012 Sum_probs=268.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcH
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (343)
+..|.+.|++++|.++|+++.+. +++..+++.++..+.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCH
Confidence 55666889999999999999875 58899999999999999999999999999998763 3788899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHH
Q 040261 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183 (343)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 183 (343)
++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+
T Consensus 356 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 356 NKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-------PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999998764 3478899999999999999999999999998864 456789999999999999999999
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc-
Q 040261 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI- 262 (343)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 262 (343)
++|+++.+.+ +.+..+|..++.+|.+.|++++|..+|+.+.+.. +.+..+|..++..+.+.|++++|..+|+++.+.
T Consensus 428 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 428 SAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 9999998864 4578999999999999999999999999999874 557889999999999999999999999999886
Q ss_pred ---CCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 040261 263 ---GVRPD--ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337 (343)
Q Consensus 263 ---~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 337 (343)
+..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+. .|+
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~ 582 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPN 582 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCC
Confidence 55677 7899999999999999999999999998865 458899999999999999999999999999976 454
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-30 Score=228.64 Aligned_cols=308 Identities=13% Similarity=0.084 Sum_probs=212.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHh-C--------------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNS-I--------------GLFPDLYTYNILINCFCKMGRVSPGFVVLGRIL 79 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (343)
+++.+++.++.+|.+.|++++|.++|+++.. . +.+++..+|+.++.+|.+.|++++|.++|+++.
T Consensus 148 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666666653211 1 112345566666666666666666666666665
Q ss_pred HcCC----------------------------------------------------------------------CccHHH
Q 040261 80 RSCF----------------------------------------------------------------------TPDAVT 89 (343)
Q Consensus 80 ~~~~----------------------------------------------------------------------~~~~~~ 89 (343)
+.++ +++..+
T Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 307 (597)
T 2xpi_A 228 MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL 307 (597)
T ss_dssp HHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHH
T ss_pred HhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHH
Confidence 4331 134455
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHH
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 169 (343)
++.++.++.+.|++++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++++.... +.+..++..+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l 379 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-------PEKAVTWLAV 379 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-------cccHHHHHHH
Confidence 555555566666666666666665554322 44455555666666666666666666655432 4456777788
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 040261 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249 (343)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (343)
+.+|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 888888888888888888877643 3356788888888888888888888888887764 45677888888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC----CCCcc--HHHHHHHHHHHHhcCChHHHH
Q 040261 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN----GCMRD--VFSYGILINGYCKNKEIEGAL 323 (343)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~ 323 (343)
++|..+|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888888888765 556788888888888888888888888888765 44566 678888888888888888888
Q ss_pred HHHHHHHhCC
Q 040261 324 SLYSEMLSKG 333 (343)
Q Consensus 324 ~~~~~~~~~~ 333 (343)
+.++++.+.+
T Consensus 537 ~~~~~~~~~~ 546 (597)
T 2xpi_A 537 DALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 8888887664
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=9e-28 Score=198.91 Aligned_cols=317 Identities=14% Similarity=0.082 Sum_probs=264.0
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 040261 4 FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF 83 (343)
Q Consensus 4 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (343)
++...+..| .+..+|..+...+.+.|++++|...|+++.+.. +.+...|..+..++.+.|++++|.+.++++.+..+
T Consensus 56 ~~~a~~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 132 (388)
T 1w3b_A 56 STLAIKQNP--LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred HHHHHhcCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344444443 578888888999999999999999998887754 34556788888888899999999999988887642
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCc
Q 040261 84 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163 (343)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 163 (343)
.+...+..+...+...|++++|.+.|+++.+..+. +..++..+...+...|++++|...|+++.... +.+.
T Consensus 133 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~ 203 (388)
T 1w3b_A 133 -DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------PNFL 203 (388)
T ss_dssp -TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred -CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCcH
Confidence 24566777888888889999999999998877433 57788888899999999999999999988865 4456
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243 (343)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (343)
..+..+...+...|++++|...+++..... +.+..++..+..++...|++++|...++++.+.+ +.+..++..+..++
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 788888899999999999999998887754 3357888899999999999999999999999874 44577899999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHH
Q 040261 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGAL 323 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 323 (343)
.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|.
T Consensus 282 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999875 6788899999999999999999999999998863 446788999999999999999999
Q ss_pred HHHHHHHhCCCCCCc
Q 040261 324 SLYSEMLSKGIRPTV 338 (343)
Q Consensus 324 ~~~~~~~~~~~~p~~ 338 (343)
+.|+++++. .|+.
T Consensus 360 ~~~~~a~~~--~p~~ 372 (388)
T 1w3b_A 360 MHYKEAIRI--SPTF 372 (388)
T ss_dssp HHHHHHHTT--CTTC
T ss_pred HHHHHHHhh--CCCC
Confidence 999999854 5653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.5e-27 Score=194.69 Aligned_cols=318 Identities=15% Similarity=0.078 Sum_probs=277.7
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
+.++.+.+..| .+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...|+++.+.
T Consensus 20 ~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 96 (388)
T 1w3b_A 20 RHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 35666666665 478889999999999999999999999988755 567889999999999999999999999999986
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccC
Q 040261 82 CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161 (343)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (343)
. +.+..+|..+..++.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.... +.
T Consensus 97 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~ 167 (388)
T 1w3b_A 97 K-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-------PN 167 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-------TT
T ss_pred C-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CC
Confidence 4 335678999999999999999999999999987543 45577788899999999999999999999865 45
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040261 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241 (343)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (343)
+..++..+...+.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..++..+..
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 245 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLAC 245 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHH
Confidence 67889999999999999999999999998865 3457888999999999999999999999998874 445788899999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 040261 242 ELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEG 321 (343)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (343)
++...|++++|...++++.+.+ +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999875 5567889999999999999999999999998864 5678899999999999999999
Q ss_pred HHHHHHHHHhCCCCCC
Q 040261 322 ALSLYSEMLSKGIRPT 337 (343)
Q Consensus 322 a~~~~~~~~~~~~~p~ 337 (343)
|.+.++++.+. .|+
T Consensus 324 A~~~~~~al~~--~p~ 337 (388)
T 1w3b_A 324 AVRLYRKALEV--FPE 337 (388)
T ss_dssp HHHHHHHHTTS--CTT
T ss_pred HHHHHHHHHhc--CCC
Confidence 99999999864 454
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=4.8e-26 Score=192.25 Aligned_cols=308 Identities=14% Similarity=0.069 Sum_probs=263.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.++..+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.+. .+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 578899999999999999999999999998764 55788999999999999999999999999998753 3688899999
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHccCCCCCccc
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDV---FTYTTL------------INGLCRTGHTIVALNLFEEMANGNGEFGVVC 159 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (343)
.++.+.|++++|.+.|+++.+.... +. ..+..+ ...+...|++++|...++++....
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------- 173 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC------- 173 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 9999999999999999999987432 33 455544 445899999999999999999865
Q ss_pred cCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040261 160 KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239 (343)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (343)
+.+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+..+
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~ 251 (450)
T 2y4t_A 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY 251 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 4567889999999999999999999999988753 3468899999999999999999999999999763 3344445444
Q ss_pred ------------HHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccH
Q 040261 240 ------------MNELCKNGKMDEASRLLELMIQIGVRPD----ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303 (343)
Q Consensus 240 ------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 303 (343)
...+...|++++|...++++.+.. +.+ ...+..+...+.+.|++++|...++++.+.. +.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 329 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence 788999999999999999999864 223 4578889999999999999999999988753 4478
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 040261 304 FSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338 (343)
Q Consensus 304 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 338 (343)
..|..+..+|...|++++|...++++++. .|+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~ 362 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--NEND 362 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Ccch
Confidence 89999999999999999999999999964 5553
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=5.3e-24 Score=179.74 Aligned_cols=311 Identities=10% Similarity=0.075 Sum_probs=257.4
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
++|+.+....| .+..+|..+..++.+.|++++|...|+++.+.+ +.+..++..+..++.+.|++++|.+.|+++.+.
T Consensus 47 ~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 123 (450)
T 2y4t_A 47 SQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123 (450)
T ss_dssp HHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 46777877765 489999999999999999999999999998866 456789999999999999999999999999986
Q ss_pred CCCccH---HHHHHH------------HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 040261 82 CFTPDA---VTFTSL------------IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFE 146 (343)
Q Consensus 82 ~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 146 (343)
... +. ..+..+ ...+...|++++|++.++++.+.... +...+..+..+|...|++++|...++
T Consensus 124 ~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (450)
T 2y4t_A 124 NPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLK 201 (450)
T ss_dssp CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred CCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 422 34 555555 44488999999999999999987543 78889999999999999999999999
Q ss_pred HHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHH------------HHHHhccCcH
Q 040261 147 EMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL------------IRGFCYANDW 214 (343)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~ 214 (343)
++.+.. +.+..++..+..++...|++++|...|+++.... +.+...+..+ ...+...|++
T Consensus 202 ~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (450)
T 2y4t_A 202 AASKLK-------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273 (450)
T ss_dssp HHHHHH-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 998864 4567899999999999999999999999998753 2244445444 7889999999
Q ss_pred HHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 040261 215 NEAKCLFIEMMDQGVQPN-----VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289 (343)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 289 (343)
++|...++.+.+. .|+ ...+..+..++.+.|++++|...++++.+.. +.+..++..+..+|...|++++|..
T Consensus 274 ~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 274 TDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp HHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999986 344 3478888999999999999999999998875 5578999999999999999999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHH------------HHhcC-----ChHHHHHHHHHH
Q 040261 290 LFVSMESNGCMRDVFSYGILING------------YCKNK-----EIEGALSLYSEM 329 (343)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~-----~~~~a~~~~~~~ 329 (343)
.++++.+.. +.+...+..+..+ |...| +.+++.+.|+++
T Consensus 351 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 351 DYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999863 2345566666533 33344 566778888863
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3.9e-23 Score=169.02 Aligned_cols=308 Identities=13% Similarity=0.057 Sum_probs=258.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
++..+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 46678899999999999999999999998865 45678999999999999999999999999998753 36788999999
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCC--CCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHccCCCCCccccC
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCK--PDVFTYTTL------------INGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (343)
.+...|++++|.+.+++..+.... .+...+..+ ...+...|++++|...++++.... +.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~ 152 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-------VW 152 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CC
Confidence 999999999999999999987430 134444444 578899999999999999999875 45
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHH----
Q 040261 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN---- 237 (343)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 237 (343)
+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 67889999999999999999999999998864 4578889999999999999999999999999873 33333333
Q ss_pred --------HHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHH
Q 040261 238 --------VIMNELCKNGKMDEASRLLELMIQIGVRPDA----SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFS 305 (343)
Q Consensus 238 --------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (343)
.+...+.+.|++++|...++++.+.. +.+. ..+..+...+...|++++|...+++..+.. +.+...
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 308 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHH
Confidence 23667889999999999999999875 3233 235567889999999999999999998863 447889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 040261 306 YGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338 (343)
Q Consensus 306 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 338 (343)
+..+...+...|++++|.+.|+++.+. .|+.
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~ 339 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEH--NEND 339 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 999999999999999999999999965 4553
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6e-23 Score=176.21 Aligned_cols=232 Identities=14% Similarity=0.067 Sum_probs=163.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHH
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (343)
++..+...+...|++++|...++++.+.... ...+..+..++...|++++|...++++.... +.+..++..
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~ 309 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-------SNNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-------TTCTHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-------cCCHHHHHH
Confidence 3444445555555666666666655554322 5555556666666666666666666665543 345567777
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 040261 169 ITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248 (343)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (343)
+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 7778888888888888888877654 2356677778888888888888888888887763 3456677788888888888
Q ss_pred hhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhc---CCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChH
Q 040261 249 MDEASRLLELMIQIGVR-PD----ASVYNTLMDGFCL---TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320 (343)
Q Consensus 249 ~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (343)
+++|...++++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...|...|+++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence 88888888888765211 11 3377788888888 888888888888887753 345677788888888888888
Q ss_pred HHHHHHHHHHhC
Q 040261 321 GALSLYSEMLSK 332 (343)
Q Consensus 321 ~a~~~~~~~~~~ 332 (343)
+|...|+++...
T Consensus 467 ~A~~~~~~a~~~ 478 (514)
T 2gw1_A 467 EAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888888765
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.6e-22 Score=163.44 Aligned_cols=293 Identities=12% Similarity=0.027 Sum_probs=248.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.++..+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 567788899999999999999999999998765 4456677778888999999999999999999875 33678888899
Q ss_pred HHHhhcC-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHH
Q 040261 95 KGLCAES-RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173 (343)
Q Consensus 95 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (343)
..+...| ++++|.+.+++..+.... +...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-------KGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------TTCSHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------cccHHHHHHHHHHH
Confidence 9999999 999999999999987543 56788899999999999999999999999875 44567788899999
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHh
Q 040261 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG--------VQPNVVTFNVIMNELCK 245 (343)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 245 (343)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+..++..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 99999999999999998864 3467889999999999999999999999988752 13345788899999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHH-HhcCChH
Q 040261 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY-CKNKEIE 320 (343)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 320 (343)
.|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++ ...|+.+
T Consensus 249 ~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred hcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999875 5567889999999999999999999999998764 34677788888877 4556543
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.9e-22 Score=173.13 Aligned_cols=309 Identities=13% Similarity=0.006 Sum_probs=256.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
....+......+.+.|++++|+..|+++...+ |+...|..+..++.+.|++++|...++++.+.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35678888999999999999999999998865 789999999999999999999999999999875 336788999999
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCC-------------------------------------------------------
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKP------------------------------------------------------- 120 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------------------------- 120 (343)
++...|++++|...|+++...+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999987764311
Q ss_pred -----------------------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHc-----c--CCCCCccccCCcchHH
Q 040261 121 -----------------------DVFTYTTLINGLCR---TGHTIVALNLFEEMAN-----G--NGEFGVVCKPDAITYS 167 (343)
Q Consensus 121 -----------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~~~~~~~ 167 (343)
+...+......+.. .|++++|...++++.. . .+......+.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 02233333333443 8999999999999987 3 1100000023456788
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 040261 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG 247 (343)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (343)
.+...+...|++++|...++++.+.. |+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999998865 338888999999999999999999999998874 456778889999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 040261 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327 (343)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 327 (343)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999875 4567789999999999999999999999998763 3467788999999999999999999999
Q ss_pred HHHhC
Q 040261 328 EMLSK 332 (343)
Q Consensus 328 ~~~~~ 332 (343)
++...
T Consensus 397 ~a~~~ 401 (514)
T 2gw1_A 397 LAIEL 401 (514)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99865
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=4.3e-21 Score=156.89 Aligned_cols=299 Identities=9% Similarity=0.036 Sum_probs=245.5
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
+.|+.+....|. ++.++..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 24 ~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 100 (359)
T 3ieg_A 24 SQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 100 (359)
T ss_dssp HHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 467777777664 88999999999999999999999999998765 446788999999999999999999999999886
Q ss_pred CCC--ccHHHHHHH------------HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 040261 82 CFT--PDAVTFTSL------------IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEE 147 (343)
Q Consensus 82 ~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 147 (343)
... .+...+..+ ...+...|++++|.+.++++.+.... +...+..+..++...|++++|...+++
T Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKA 179 (359)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 420 244455444 57888999999999999999987543 778899999999999999999999999
Q ss_pred HHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHH------------HHHHHHhccCcHH
Q 040261 148 MANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT------------SLIRGFCYANDWN 215 (343)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~ 215 (343)
+.... +.+..++..+...+...|++++|...+++..+.. +.+...+. .+...+...|+++
T Consensus 180 ~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 251 (359)
T 3ieg_A 180 ASKLK-------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251 (359)
T ss_dssp HHTTC-------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 99875 5567889999999999999999999999988754 22333333 2366788999999
Q ss_pred HHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 040261 216 EAKCLFIEMMDQGVQPNV----VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291 (343)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (343)
+|...++.+.+.. +.+. ..+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus 252 ~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 252 DATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999874 2233 235557789999999999999999999875 557889999999999999999999999
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHh
Q 040261 292 VSMESNGCMRDVFSYGILINGYCK 315 (343)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~~~~~~ 315 (343)
+++.+.. +.+...+..+..+...
T Consensus 330 ~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 330 EAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCChHHHHHHHHHHHH
Confidence 9999864 2345566666655443
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2e-21 Score=167.74 Aligned_cols=317 Identities=13% Similarity=0.093 Sum_probs=235.0
Q ss_pred hhHHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 2 CIFDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 2 ~i~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
+.|+.+....|. ++.+|..+..++.+.|++++|++.++++.+.+ +.+..++..+..++...|++++|...|+.+...
T Consensus 46 ~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 122 (537)
T 3fp2_A 46 KYYQYAIELDPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122 (537)
T ss_dssp HHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC--
T ss_pred HHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 467777777764 88899999999999999999999999988765 456778888889999999988888877432100
Q ss_pred --------------------------------------------------------------------------------
Q 040261 82 -------------------------------------------------------------------------------- 81 (343)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (343)
T Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (537)
T 3fp2_A 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------CCCcc--------HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 040261 82 ---------------------------CFTPD--------AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126 (343)
Q Consensus 82 ---------------------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (343)
...|+ ..++..+...+...|++++|.+.+++..+. .|+...+.
T Consensus 203 ~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 280 (537)
T 3fp2_A 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYI 280 (537)
T ss_dssp HHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHH
Confidence 00111 113444555666677788888888887776 34466777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 040261 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206 (343)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (343)
.+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 281 ~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 352 (537)
T 3fp2_A 281 FLALTLADKENSQEFFKFFQKAVDLN-------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLAC 352 (537)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 77788888888888888888887764 3456778888888888888888888888877654 234667778888
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhcC
Q 040261 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV-----RPDASVYNTLMDGFCLT 281 (343)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 281 (343)
++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... ......+......+...
T Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 353 LLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888763 44566777888888888888888888888776421 11122234445566666
Q ss_pred ----------CchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 282 ----------GRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 282 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
|++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++....
T Consensus 432 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 432 SSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88888888888887753 3467788889999999999999999999988653
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.2e-21 Score=158.28 Aligned_cols=277 Identities=11% Similarity=-0.001 Sum_probs=236.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHH
Q 040261 48 LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127 (343)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (343)
.+.+...+..+...+...|++++|.++++++.+..+ .+...+..++.++...|++++|...++++.+.... +...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 345667788888899999999999999999998753 35667777888999999999999999999987543 6778889
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 040261 128 LINGLCRTG-HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIR 206 (343)
Q Consensus 128 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (343)
+...+...| ++++|...++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 999999999 9999999999999875 4567789999999999999999999999988764 235677788999
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHH
Q 040261 207 GFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG--------VRPDASVYNTLMDGF 278 (343)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~ 278 (343)
.+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...+
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999874 5567889999999999999999999999998752 133457889999999
Q ss_pred hcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 040261 279 CLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPTV 338 (343)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 338 (343)
...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+. .|+.
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 303 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDD 303 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCC
T ss_pred HHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCc
Confidence 99999999999999998764 446788999999999999999999999998754 4543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=6.4e-22 Score=162.53 Aligned_cols=293 Identities=11% Similarity=0.021 Sum_probs=231.8
Q ss_pred HHHhcCChhHHHH-HHHHhHhCCCC-C--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC
Q 040261 26 CLAKNKHYDTVLS-LFKRLNSIGLF-P--DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101 (343)
Q Consensus 26 ~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (343)
++.-.|++++|.+ .+++....... | +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445678899998 88876543211 1 34568889999999999999999999999875 347788999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHH-------------
Q 040261 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST------------- 168 (343)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 168 (343)
++++|.+.++++.+.... +..++..+..++...|++++|...++++....+ .+...+..
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTP-------AYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-------TTGGGCC--------------
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CcHHHHHHHHHHhhhhcccHH
Confidence 999999999999988543 788899999999999999999999999998753 22222211
Q ss_pred --HHHHHHhcCChHHHHHHHHHhhhCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040261 169 --ITDGLCKEGFVDKAKELFLKMKDENINP-DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245 (343)
Q Consensus 169 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (343)
.+..+...|++++|...++++.+..... +..++..+..++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLAN 263 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 2333348999999999999998764221 47889999999999999999999999999874 4567889999999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCc----------cHHHHHHHHHHHHh
Q 040261 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR----------DVFSYGILINGYCK 315 (343)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~ 315 (343)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|...++++.+..... ...+|..+..+|..
T Consensus 264 ~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 999999999999999875 5678899999999999999999999999887642111 16789999999999
Q ss_pred cCChHHHHHHHHHH
Q 040261 316 NKEIEGALSLYSEM 329 (343)
Q Consensus 316 ~~~~~~a~~~~~~~ 329 (343)
.|++++|..++++.
T Consensus 343 ~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 343 LGQSDAYGAADARD 356 (368)
T ss_dssp HTCGGGHHHHHTTC
T ss_pred hCChHhHHHhHHHH
Confidence 99999999887644
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.1e-20 Score=163.17 Aligned_cols=303 Identities=9% Similarity=0.035 Sum_probs=246.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
....+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.+.|++++|.+.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35678889999999999999999999998865 5578899999999999999999999999999875 336888999999
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCC-------------------------------------CCHH---------------
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCK-------------------------------------PDVF--------------- 123 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~-------------------------------------~~~~--------------- 123 (343)
++...|++++|.+.|+.+ ..... |+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 999999999999999643 22111 1110
Q ss_pred ---------------HHHHHHHHHH--------hcCChHHHHHHHHHHHccCCCCCccccCC-------cchHHHHHHHH
Q 040261 124 ---------------TYTTLINGLC--------RTGHTIVALNLFEEMANGNGEFGVVCKPD-------AITYSTITDGL 173 (343)
Q Consensus 124 ---------------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 173 (343)
....+...+. ..|++++|..+++++.+.. +.+ ..++..+...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-------TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-------CCcchhhHHHHHHHHHHHHHH
Confidence 1111111111 1247889999999998865 222 23466777888
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHH
Q 040261 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253 (343)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 253 (343)
...|++++|...++++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999998864 558889999999999999999999999999874 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++....
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 9999999875 4467789999999999999999999999998864 4467788999999999999999999999988653
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=6.9e-22 Score=162.18 Aligned_cols=267 Identities=13% Similarity=0.012 Sum_probs=220.2
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040261 51 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130 (343)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (343)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|++.|++..+.... +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 44568888999999999999999999999875 347889999999999999999999999999987543 6888999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCccccCCcc----------hHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CChh
Q 040261 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAI----------TYSTITDGLCKEGFVDKAKELFLKMKDENIN-PDVV 199 (343)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 199 (343)
+|...|++++|...++++.... +.+.. .+..+...+...|++++|...++++.+.... ++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-------PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-------ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 9999999999999999998864 22222 3344578899999999999999999886422 1578
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (343)
++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|.
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 89999999999999999999999999874 5568899999999999999999999999999875 556889999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCC-----------ccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 040261 280 LTGRVNRAKELFVSMESNGCM-----------RDVFSYGILINGYCKNKEIEGALSLYSE 328 (343)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 328 (343)
..|++++|...++++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999998764210 1367899999999999999988877654
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=2.7e-21 Score=158.64 Aligned_cols=270 Identities=11% Similarity=-0.024 Sum_probs=220.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345669999999999999999999999998865 5578899999999999999999999999999875 33688999999
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcch
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKP---------DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 165 (343)
.++...|++++|.+.++++.+..... ....+..+...+...|++++|...++++....+ ...+..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~ 215 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG-----DMIDPDL 215 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC-----SSCCHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-----CccCHHH
Confidence 99999999999999999998763210 112233457889999999999999999998752 1125788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040261 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245 (343)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (343)
+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..++..
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 9999999999999999999999988764 3468899999999999999999999999999874 4458889999999999
Q ss_pred CCChhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 040261 246 NGKMDEASRLLELMIQIGVR-----------PDASVYNTLMDGFCLTGRVNRAKELFVS 293 (343)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (343)
.|++++|...++++.+.... .+..+|..+..++...|+.+.+..+..+
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999875211 1357889999999999999988887654
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=7.5e-21 Score=156.14 Aligned_cols=267 Identities=12% Similarity=0.032 Sum_probs=225.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35678899999999999999999999999865 5577899999999999999999999999999875 347889999999
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHH---------------HHHHHHhcCChHHHHHHHHHHHccCCCCCcccc
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDVFTYTT---------------LINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 160 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 160 (343)
.+...|++++|.+.++++...... +...+.. .+..+...|++++|...++++....+. .
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-----~ 214 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT-----S 214 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-----S
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcC-----c
Confidence 999999999999999999987533 2222211 233444899999999999999987521 1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040261 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240 (343)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (343)
++..++..+..++.+.|++++|...++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~ 292 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLG 292 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 157788999999999999999999999988764 3467889999999999999999999999999874 45678899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHhcCCchHHHHHHHHH
Q 040261 241 NELCKNGKMDEASRLLELMIQIGVRPD-----------ASVYNTLMDGFCLTGRVNRAKELFVS 293 (343)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (343)
.++.+.|++++|...++++.+.. +.+ ..+|..+..+|...|++++|..++++
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999999999998753 222 68899999999999999999998764
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=3.4e-20 Score=149.61 Aligned_cols=262 Identities=11% Similarity=0.012 Sum_probs=177.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 040261 57 ILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136 (343)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (343)
.+...+...|++++|..+++++.+... .+...+..+..++...|++++|.+.++++.+.... +..++..+...+...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcC
Confidence 333344444444444444444443321 13334444444444444444444444444443211 3444444445555555
Q ss_pred ChHHHHHHHHHHHccCCCCCccccCCcchHHH-------------H-HH-HHHhcCChHHHHHHHHHhhhCCCCCChhhH
Q 040261 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYST-------------I-TD-GLCKEGFVDKAKELFLKMKDENINPDVVTY 201 (343)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 201 (343)
++++|.+.++++.... +.+...+.. + .. .+...|++++|...++++.+.. +.+...+
T Consensus 104 ~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ-------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp CHHHHHHHHHHHHHTS-------TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred CHHHHHHHHHHHHHhC-------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 5555555555544432 111122222 2 22 3778899999999999988764 3467889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 040261 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281 (343)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (343)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999874 4567889999999999999999999999998875 55788999999999999
Q ss_pred CchHHHHHHHHHHHhCCCCc-----------cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 282 GRVNRAKELFVSMESNGCMR-----------DVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
|++++|.+.++++.+..... +...+..+..++...|++++|..++++.+
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999988753221 47788999999999999999999887543
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=2.1e-20 Score=150.85 Aligned_cols=268 Identities=11% Similarity=-0.054 Sum_probs=225.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45567888999999999999999999998765 4577889999999999999999999999999875 346788899999
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHccCCCCCcccc
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL--------------IN-GLCRTGHTIVALNLFEEMANGNGEFGVVCK 160 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 160 (343)
.+...|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.... +
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~ 169 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-------P 169 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-------T
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-------C
Confidence 999999999999999999887433 22233333 22 3778899999999999998875 4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040261 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIM 240 (343)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (343)
.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 247 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA 247 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 567889999999999999999999999988764 3467889999999999999999999999998874 45678899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 040261 241 NELCKNGKMDEASRLLELMIQIGVRP-----------DASVYNTLMDGFCLTGRVNRAKELFVSME 295 (343)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (343)
..+...|++++|...++++.+..... +...+..+..++...|++++|..++++..
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999998864221 57789999999999999999999987543
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=8.3e-19 Score=138.54 Aligned_cols=276 Identities=13% Similarity=0.094 Sum_probs=216.9
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCH--HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDL--YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (343)
+......|+++.|+..++...... |+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 445567899999999998765533 443 4556678999999999999876654 2 3567788888999999999
Q ss_pred cHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChH
Q 040261 102 RIMEAAALFTKLRAFGCKP-DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180 (343)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (343)
+.++|++.++++...+..| +...+..+..++...|++++|++.+++ . .+..++..++.++.+.|+++
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~--------~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----G--------DSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----C--------CSHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----C--------CCHHHHHHHHHHHHHCCCHH
Confidence 9999999999998876444 566677788999999999999999987 1 35678899999999999999
Q ss_pred HHHHHHHHhhhCCCCCChhhH---HHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 040261 181 KAKELFLKMKDENINPDVVTY---TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257 (343)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (343)
+|...++++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998764 443211 22334445669999999999999988 36678899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCchHH-HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 040261 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNR-AKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLY 326 (343)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 326 (343)
++.+.. +-+..++..++..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++..-|
T Consensus 225 ~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 225 EALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHHc
Confidence 999886 5678899999999999999876 678999988753 54332 233455556666665443
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.2e-18 Score=137.72 Aligned_cols=257 Identities=9% Similarity=-0.004 Sum_probs=206.7
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 040261 60 NCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139 (343)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (343)
+.....|+++.|+..++.+......+.......+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 44567799999999988765543222234556678999999999999987654 2 3567778889999999999999
Q ss_pred HHHHHHHHHHccCCCCCccc-cCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHH
Q 040261 140 VALNLFEEMANGNGEFGVVC-KPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAK 218 (343)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 218 (343)
+|++.++++...+ . +.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.
T Consensus 83 ~A~~~l~~ll~~~------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 83 AIVAELDREMSRS------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHHHSC------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcc------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999988654 2 33556677778999999999999999987 457888999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHH---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 040261 219 CLFIEMMDQGVQPNVVTF---NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295 (343)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (343)
..++.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999874 553322 123344455689999999999999984 6788999999999999999999999999988
Q ss_pred hCCCCccHHHHHHHHHHHHhcCChHH-HHHHHHHHHhCCCCCCc
Q 040261 296 SNGCMRDVFSYGILINGYCKNKEIEG-ALSLYSEMLSKGIRPTV 338 (343)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~p~~ 338 (343)
+.. +.++.++..++..+...|+.++ +.++++++++. .|+.
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~ 268 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSH 268 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTC
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCC
Confidence 864 4478889999999999999876 57899998865 4543
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=3.8e-16 Score=133.04 Aligned_cols=288 Identities=13% Similarity=0.043 Sum_probs=151.2
Q ss_pred ChhhHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCccH
Q 040261 16 PVCSFNILFGCLAK----NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK----MGRVSPGFVVLGRILRSCFTPDA 87 (343)
Q Consensus 16 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 87 (343)
++.++..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555555 556666666666555533 34455555555555 555666666666555543 33
Q ss_pred HHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCCccc
Q 040261 88 VTFTSLIKGLCA----ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVC 159 (343)
Q Consensus 88 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (343)
..+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------- 181 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG------- 181 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------
Confidence 444445555544 455555555555555443 33444444444444 445555555555554432
Q ss_pred cCCcchHHHHHHHHHh----------------------------------------cCChHHHHHHHHHhhhCCCCCChh
Q 040261 160 KPDAITYSTITDGLCK----------------------------------------EGFVDKAKELFLKMKDENINPDVV 199 (343)
Q Consensus 160 ~~~~~~~~~l~~~~~~----------------------------------------~~~~~~a~~~~~~~~~~~~~~~~~ 199 (343)
+...+..+...|.. .+++++|..+|++..+.+ +..
T Consensus 182 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 182 --NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHH
T ss_pred --CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 23344444444443 444555555554444432 233
Q ss_pred hHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHH
Q 040261 200 TYTSLIRGFCY----ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN-----GKMDEASRLLELMIQIGVRPDASV 270 (343)
Q Consensus 200 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~ 270 (343)
.+..+...+.. .+++++|...++...+.+ +...+..+...+... +++++|...+++..+.+ +...
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 34444444444 455555555555555443 233444455555544 56666666666665543 3344
Q ss_pred HHHHHHHHhcCC---chHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 040261 271 YNTLMDGFCLTG---RVNRAKELFVSMESNGCMRDVFSYGILINGYCK----NKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 271 ~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 333 (343)
+..+...|...| ++++|.+.|++..+.+ ++..+..+...|.. .+++++|...|++..+.|
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 555555555544 5666666666666642 45566666666666 667777777777766654
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=4.8e-16 Score=132.44 Aligned_cols=290 Identities=11% Similarity=0.018 Sum_probs=207.3
Q ss_pred ChhhHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCccH
Q 040261 16 PVCSFNILFGCLAK----NKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK----MGRVSPGFVVLGRILRSCFTPDA 87 (343)
Q Consensus 16 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 87 (343)
++.++..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|.++|++..+.+ +.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 33444445555544 445555555555554433 33444444444444 445555555555555543 44
Q ss_pred HHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCCccc
Q 040261 88 VTFTSLIKGLCA----ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVC 159 (343)
Q Consensus 88 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (343)
..+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..++++..+.+
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------- 253 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG------- 253 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------
Confidence 455555555555 566666666666666543 44555556666665 667777777777776643
Q ss_pred cCCcchHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc-----CcHHHHHHHHHHHHHcCCC
Q 040261 160 KPDAITYSTITDGLCK----EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA-----NDWNEAKCLFIEMMDQGVQ 230 (343)
Q Consensus 160 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~ 230 (343)
+...+..+...|.. .++.++|+.+|++..+.+ +...+..+...|... +++++|...++...+.+
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 35567777778877 899999999999998765 566777788888776 89999999999999875
Q ss_pred CCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCchHHHHHHHHHHHhCCCCccH
Q 040261 231 PNVVTFNVIMNELCKNG---KMDEASRLLELMIQIGVRPDASVYNTLMDGFCL----TGRVNRAKELFVSMESNGCMRDV 303 (343)
Q Consensus 231 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 303 (343)
+...+..+...+...| ++++|..+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ ++
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~ 399 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LS 399 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CH
Confidence 4567777888887766 8899999999999875 57788888888888 899999999999999875 57
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCC
Q 040261 304 FSYGILINGYCK----NKEIEGALSLYSEMLSKGIR 335 (343)
Q Consensus 304 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 335 (343)
..+..+...|.. .+++++|...|++....+..
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 788889999988 89999999999999987643
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.2e-17 Score=129.98 Aligned_cols=225 Identities=11% Similarity=0.026 Sum_probs=136.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCc--c----HHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP--D----AVTF 90 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 90 (343)
...+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|.+.++++.+..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777777777777777777777776655 566677777777777777777777777776542111 1 4566
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHH
Q 040261 91 TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTIT 170 (343)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (343)
..+...+...|++++|.+.+++..+.. |+. ..+...|++++|...++++.... +.+...+..+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~ 146 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHHH
Confidence 666666777777777777777766652 332 23445556666666666666543 33445555666
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChh
Q 040261 171 DGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMD 250 (343)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 250 (343)
..+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|+++
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHH
Confidence 66666666666666666655543 2244555555555666666666666666555542 233455555555555556665
Q ss_pred HHHHHHHHHHH
Q 040261 251 EASRLLELMIQ 261 (343)
Q Consensus 251 ~a~~~~~~~~~ 261 (343)
+|...++++.+
T Consensus 225 ~A~~~~~~a~~ 235 (258)
T 3uq3_A 225 SALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.4e-17 Score=127.33 Aligned_cols=233 Identities=13% Similarity=0.018 Sum_probs=192.6
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcch
Q 040261 86 DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAIT 165 (343)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 165 (343)
....+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...++++....+......+....+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34567778888888899999999999988876 5778888889999999999999999998877541100000001578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040261 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245 (343)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (343)
+..+..++...|++++|...++++.... |+. ..+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 8899999999999999999999998853 442 45667789999999999998863 3346778889999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 040261 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSL 325 (343)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 325 (343)
.|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999876 5678899999999999999999999999998864 44678899999999999999999999
Q ss_pred HHHHHhC
Q 040261 326 YSEMLSK 332 (343)
Q Consensus 326 ~~~~~~~ 332 (343)
+++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998765
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=4.2e-20 Score=161.41 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhH---hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLN---SIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.+|+++|++|++.|+.++|.++|++|. ..|+.||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 479999999999999999999998876 45789999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCc-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc--ccCCcchHHHHHH
Q 040261 95 KGLCAESR-IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV--CKPDAITYSTITD 171 (343)
Q Consensus 95 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 171 (343)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++.+.+..+.+.+. .++...+...|..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-------~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-------TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-------HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-------HHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 99999998 478999999999999999999999988655442 3344444434333221 1122445556667
Q ss_pred HHHhcC
Q 040261 172 GLCKEG 177 (343)
Q Consensus 172 ~~~~~~ 177 (343)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=5.8e-19 Score=142.82 Aligned_cols=267 Identities=13% Similarity=0.131 Sum_probs=134.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
++.+|..++.++.+.|++++|++.|.+. +|...|..++.++...|++++|..+++...+. .+++.+...++.
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~ 102 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHH
Confidence 3458999999999999999999999652 57779999999999999999999988877764 445778888999
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (343)
+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+
T Consensus 103 ~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------------~n~~~LA~~L~~ 160 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVH 160 (449)
T ss_dssp ------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------------TCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------------hhHHHHHHHHHH
Confidence 9999999999988874 367779999999999999999999999974 368999999999
Q ss_pred cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 040261 176 EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRL 255 (343)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (343)
.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....++..|.+.|.+++|..+
T Consensus 161 Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 161 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988 26889999999999999999996655432 23334455788999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcC--CchHHHHHHHHHHHhCCCCc------cHHHHHHHHHHHHhcCChHHHHHHH
Q 040261 256 LELMIQIGVRPDASVYNTLMDGFCLT--GRVNRAKELFVSMESNGCMR------DVFSYGILINGYCKNKEIEGALSLY 326 (343)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 326 (343)
++...... +-....|+.+.-+|++- ++..+.++.|.. +-+++| +...|.-+...|..-++++.|....
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 99998765 66678888888777765 344444444431 122333 4567888999999999999987743
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=3e-15 Score=128.84 Aligned_cols=188 Identities=11% Similarity=0.082 Sum_probs=149.7
Q ss_pred cCChH-------HHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC--hhhHHHHH
Q 040261 135 TGHTI-------VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD--VVTYTSLI 205 (343)
Q Consensus 135 ~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 205 (343)
.|+++ +|..++++..+.. .+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 363 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYM 363 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTT------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHH
Confidence 57776 7888888887632 2456788999999999999999999999999885 343 24788888
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch
Q 040261 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE-LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284 (343)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 284 (343)
..+.+.|++++|..+|++..+.. +.+...|...+.. +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.
T Consensus 364 ~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 364 KFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCH
Confidence 88889999999999999998863 2233333333222 346899999999999998874 45688999999999999999
Q ss_pred HHHHHHHHHHHhCCC-Ccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 285 NRAKELFVSMESNGC-MRD--VFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 285 ~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
++|..+|++....+. .|+ ...|...+......|+.+.+..+++++.+.
T Consensus 442 ~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 442 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999988632 222 447888888888899999999999988754
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=156.82 Aligned_cols=116 Identities=12% Similarity=0.172 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 040261 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMD---QGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTL 274 (343)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 274 (343)
..+|+++|.+|++.|++++|..+|..|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34455555555555555555555544432 245555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCch-HHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 040261 275 MDGFCLTGRV-NRAKELFVSMESNGCMRDVFSYGILINGY 313 (343)
Q Consensus 275 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (343)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 5555555542 45555555555555555555555555433
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=2e-17 Score=125.09 Aligned_cols=198 Identities=14% Similarity=-0.005 Sum_probs=110.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHH
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (343)
|+++..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+..+ .+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 4677778888888888888888888888877754 45667777788888888888888888888877642 256667777
Q ss_pred HHHHhhc-----------CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCC
Q 040261 94 IKGLCAE-----------SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162 (343)
Q Consensus 94 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (343)
..++... |++++|+..+++..+..+. +...+..+..++...|++++|...+++..+.. .+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~ 150 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--------DT 150 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--------cc
Confidence 7777666 5555555555555544322 34444455555555555555555555554431 23
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHH
Q 040261 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223 (343)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (343)
...+..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|...+++
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3444445555555555555555555544432 12344444444455555555555444443
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.1e-16 Score=135.75 Aligned_cols=318 Identities=10% Similarity=-0.039 Sum_probs=213.1
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-----C--CCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHcCC
Q 040261 13 SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI-----G--LFPDLYTYNILINCFCKM--GRVSPGFVVLGRILRSCF 83 (343)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~ 83 (343)
.|....+|+.+..+|...|++++|...+++..+. + ......++.....++... +++++|.+.|++..+..+
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 3356778999999999999999999999887542 1 012345666666555554 578999999999998753
Q ss_pred CccHHHHHHHHHHH---hhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCC
Q 040261 84 TPDAVTFTSLIKGL---CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR----TGHTIVALNLFEEMANGNGEFG 156 (343)
Q Consensus 84 ~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 156 (343)
. +...+..+..++ ...++.++|++.+++..+..+. +..++..+...+.. .+++++|.+.+++.....
T Consensus 170 ~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---- 243 (472)
T 4g1t_A 170 K-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---- 243 (472)
T ss_dssp T-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC----
T ss_pred C-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC----
Confidence 3 455555555443 3457778899999998877533 55566555555444 467889999999988865
Q ss_pred ccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc-------------------CcHHHH
Q 040261 157 VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA-------------------NDWNEA 217 (343)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a 217 (343)
+.+..++..+...|...|++++|...+++..+.. +.+..++..+..+|... +.++.|
T Consensus 244 ---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 244 ---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319 (472)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Confidence 4567788999999999999999999999988764 23566666666555322 335678
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhcCCchHHHHHHHHHH
Q 040261 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDAS--VYNTLMD-GFCLTGRVNRAKELFVSM 294 (343)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~ 294 (343)
...++...+.. +.+...+..+...+...|++++|...|+++.+....+... .+..+.. .....|+.++|...+++.
T Consensus 320 ~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 320 VAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888887764 4456778889999999999999999999999875333221 2233332 245778999999988877
Q ss_pred HhCC-----------------------CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCcccc
Q 040261 295 ESNG-----------------------CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKG-IRPTVVTY 341 (343)
Q Consensus 295 ~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~t~ 341 (343)
.+.. -+.+..+|..+...|...|++++|++.|++.++.+ ..|+..+|
T Consensus 399 l~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 399 VKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 6532 13456788999999999999999999999999875 34666555
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=2.3e-17 Score=124.74 Aligned_cols=198 Identities=13% Similarity=0.055 Sum_probs=109.3
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCc
Q 040261 84 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA 163 (343)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 163 (343)
+++...+..+...+.+.|++++|...|++..+..+. +...+..+..++.+.|++++|...+++..+.. |.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-------PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcH
Confidence 345666777777777888888888888887776443 56677777778888888888888888877764 3445
Q ss_pred chHHHHHHHHHhc-----------CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 040261 164 ITYSTITDGLCKE-----------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232 (343)
Q Consensus 164 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 232 (343)
..+..+..++... |++++|+..+++..+.. +.+...+..+..++...|++++|...+++..+.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 6666676666665 55555555555554432 1234444445555555555555555555555443 34
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 040261 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVS 293 (343)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (343)
...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444455555555555555555555554443 33344444444555555555555544443
No 36
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.79 E-value=9.4e-16 Score=120.35 Aligned_cols=225 Identities=11% Similarity=-0.035 Sum_probs=165.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCccHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCK----MGRVSPGFVVLGRILRSCFTPDAVTF 90 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 90 (343)
.++.++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 46777888888888888888888888888773 345677777778888 888888888888887764 56677
Q ss_pred HHHHHHHhh----cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCCccccCC
Q 040261 91 TSLIKGLCA----ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPD 162 (343)
Q Consensus 91 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (343)
..+...+.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------~ 145 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---------D 145 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---------C
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---------c
Confidence 777777777 888888888888887764 66677777777777 788888888888877653 3
Q ss_pred cchHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCHH
Q 040261 163 AITYSTITDGLCK----EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY----ANDWNEAKCLFIEMMDQGVQPNVV 234 (343)
Q Consensus 163 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 234 (343)
...+..+...|.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 219 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 219 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence 4566666677766 777778877777776653 45566666667766 777777777777777654 245
Q ss_pred HHHHHHHHHHh----CCChhHHHHHHHHHHHcC
Q 040261 235 TFNVIMNELCK----NGKMDEASRLLELMIQIG 263 (343)
Q Consensus 235 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 263 (343)
.+..+...+.. .+++++|...+++..+.+
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 56666666766 777777777777777665
No 37
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=6.2e-17 Score=132.09 Aligned_cols=217 Identities=5% Similarity=0.018 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR-VSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
..+|..+...+.+.|++++|+..++++++.. +-+..+|+.+..++...|+ +++|+..|+++++.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4556666666666777777777777666644 3345566666666666665 77777777776665432 5566666666
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (343)
++...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..++++.+.+ +.+..+|+.+..++.+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-------P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 666667777777777766666433 55666666666666677777777776666654 3445666666666666
Q ss_pred -cCChHHH-----HHHHHHhhhCCCCCChhhHHHHHHHHhccC--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 040261 176 -EGFVDKA-----KELFLKMKDENINPDVVTYTSLIRGFCYAN--DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN 246 (343)
Q Consensus 176 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (343)
.|..++| +..+++..... +-+...|..+...+...| ++++|...+..+ +. .+.+...+..++.++.+.
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 4443555 34555544432 123445555555555544 355555555554 22 122344445555555443
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.2e-15 Score=129.38 Aligned_cols=307 Identities=12% Similarity=-0.012 Sum_probs=223.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhC--------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC----
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI--------GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC---- 82 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 82 (343)
.....||.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 45678999999999999999999999887542 112345689999999999999999999999887531
Q ss_pred --CC-ccHHHHHHHHHHHhhc--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHccCCC
Q 040261 83 --FT-PDAVTFTSLIKGLCAE--SRIMEAAALFTKLRAFGCKPDVFTYTTLING---LCRTGHTIVALNLFEEMANGNGE 154 (343)
Q Consensus 83 --~~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 154 (343)
.. ....++.....++... +++++|++.|++..+..+. +...+..+..+ +...++.++|++.+++..+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--
Confidence 11 1245566555555543 5799999999999987543 45555555544 445678889999999988764
Q ss_pred CCccccCCcchHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 040261 155 FGVVCKPDAITYSTITDGLCK----EGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ 230 (343)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 230 (343)
+.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +
T Consensus 206 -----p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 278 (472)
T 4g1t_A 206 -----PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-P 278 (472)
T ss_dssp -----SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred -----CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-C
Confidence 3445566655555443 467889999999887764 3467888999999999999999999999999873 3
Q ss_pred CCHHHHHHHHHHHHhC-------------------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 040261 231 PNVVTFNVIMNELCKN-------------------GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291 (343)
Q Consensus 231 ~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (343)
-+..++..+..+|... +..+.|...++...+.. +.+...+..+...+...|++++|...|
T Consensus 279 ~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 4466666666555322 23567888888887765 455667888999999999999999999
Q ss_pred HHHHhCCCCccHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhC
Q 040261 292 VSMESNGCMRDVF--SYGILIN-GYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 292 ~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 332 (343)
++..+....+... .+..+.. .....|++++|+..|++.+..
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9998864333221 2233332 245779999999999998854
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=1.3e-16 Score=125.13 Aligned_cols=244 Identities=9% Similarity=0.061 Sum_probs=135.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHH
Q 040261 56 NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKP--DVFTYTTLINGLC 133 (343)
Q Consensus 56 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 133 (343)
......+...|++++|...++++.+..+ .+...+..+..++...|++++|++.+++..+.+..+ ....+..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3344444555555555555555554421 133345555555555555555555555555522111 1223555666666
Q ss_pred hcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc
Q 040261 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213 (343)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (343)
..|++++|...+++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+...+...++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 6666666666666666543 3344566666666666666666666666665542 2244555555523333447
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHhcCCc
Q 040261 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK---MDEASRLLELMIQIG-VRPD------ASVYNTLMDGFCLTGR 283 (343)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~ 283 (343)
+++|...++.+.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..++..+...|...|+
T Consensus 158 ~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 777777777766653 3335555566666666666 666777776666541 1122 2456667777777777
Q ss_pred hHHHHHHHHHHHhCCCCccHHHHHHHH
Q 040261 284 VNRAKELFVSMESNGCMRDVFSYGILI 310 (343)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~l~ 310 (343)
+++|...+++..+.. +.+...+..+.
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~a~~~l~ 262 (272)
T 3u4t_A 237 KVKADAAWKNILALD-PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC-ccHHHHHHHhh
Confidence 777777777776653 22344444433
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=4.3e-16 Score=122.18 Aligned_cols=247 Identities=13% Similarity=0.105 Sum_probs=160.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCcc--HHHHHHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD--AVTFTSLI 94 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 94 (343)
+..+......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++++.+....++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455666777777778888888877777654 33445677777777777788888777777776321111 23366777
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
..+...|++++|++.+++..+.... +...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-------TTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-------CCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-------CCcHHHHHHHHHHHH
Confidence 7777777788888777777776433 45677777777777788888877777776653 344555666662333
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHH
Q 040261 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND---WNEAKCLFIEMMDQG-VQPN------VVTFNVIMNELC 244 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~ 244 (343)
..+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...+.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 4457777877777776653 2235566666666666666 666777777766541 1122 145666777777
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 040261 245 KNGKMDEASRLLELMIQIGVRPDASVYNTL 274 (343)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 274 (343)
..|++++|...++++.+.. +.+......+
T Consensus 233 ~~~~~~~A~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-ccHHHHHHHh
Confidence 7778888888777777764 3344444443
No 41
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.9e-18 Score=137.47 Aligned_cols=248 Identities=13% Similarity=0.109 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (343)
.+.+.|+. +.|+.++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|...|..++.++
T Consensus 7 ~a~~~ll~---~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~a 71 (449)
T 1b89_A 7 SAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH---HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHH
Confidence 34444444 6788999999999883 2359999999999999999999999653 4777999999999
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcC
Q 040261 98 CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177 (343)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (343)
...|++++|+++++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|
T Consensus 72 e~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g 136 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEK 136 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-------------CC----------------
T ss_pred HhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcC
Confidence 9999999999988887764 4467788899999999999999887774 255679999999999999
Q ss_pred ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 040261 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLE 257 (343)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (343)
.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|.....
T Consensus 137 ~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 137 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred CHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999977 36999999999999999999999988 278999999999999999999966554
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc
Q 040261 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316 (343)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (343)
.+ ...+.-...++..|.+.|++++|..+++...... +-....|+.+...|++-
T Consensus 202 ~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 202 HI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp TT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 42 2344445578899999999999999999988754 44567777777777654
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.77 E-value=5.1e-16 Score=126.68 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCc-HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040261 52 LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR-IMEAAALFTKLRAFGCKPDVFTYTTLIN 130 (343)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (343)
...|..+..++...|++++|+..++++++.... +...|+.+..++...|+ +++|+..|++..+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 457888888899999999999999999987533 68889999999999996 99999999999998655 7889999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 040261 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210 (343)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (343)
++...|++++|+..++++...+ +.+..+|..+..++.+.|++++|+..++++.+.. +-+...|+.+..++..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999876 5677899999999999999999999999998875 3367889989888888
Q ss_pred -cCcHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 040261 211 -ANDWNEA-----KCLFIEMMDQGVQPNVVTFNVIMNELCKNG--KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG 282 (343)
Q Consensus 211 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (343)
.|..++| +..+++.++.. +-+...|..+..++...| ++++|...+.++ +.. +.+...+..+...|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHh
Confidence 5654666 58888888763 445778888888888888 689999999887 433 556788888888888864
Q ss_pred ---------chHHHHHHHHHH-HhCCCCccHHHHHHHHHHHH
Q 040261 283 ---------RVNRAKELFVSM-ESNGCMRDVFSYGILINGYC 314 (343)
Q Consensus 283 ---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 314 (343)
..++|.++++++ .+.. +.....|..+...+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 358999999999 6642 223455665555544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1.1e-15 Score=118.53 Aligned_cols=203 Identities=13% Similarity=-0.010 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040261 52 LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131 (343)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (343)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4566777777777888888888888777654 235667777777788888888888888887776433 56677777778
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc
Q 040261 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211 (343)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (343)
+...|++++|.+.++++...+. .+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTL-----YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTT-----CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHhCcc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 8888888888888888776210 13345667777778888888888888888776653 23566777777888888
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 040261 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263 (343)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 263 (343)
|++++|...++.+.+.. +.+...+..+...+...|++++|..+++++.+..
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88888888888877653 4456667777777888888888888888887763
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.76 E-value=8.6e-17 Score=126.37 Aligned_cols=245 Identities=12% Similarity=-0.055 Sum_probs=133.2
Q ss_pred CCcchHHHHHHHHHHcCC---CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 040261 66 GRVSPGFVVLGRILRSCF---TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142 (343)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 142 (343)
|++++|...++++.+... +.+..++..+...+...|++++|.+.|++..+.... +..++..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555554321 112344555555555556666666666655554322 4555555666666666666666
Q ss_pred HHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 040261 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFI 222 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 222 (343)
..++++.... +.+..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|...++
T Consensus 98 ~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 98 EAFDSVLELD-------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhcC-------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666665543 2344556666666666666666666666655532 333333333334445566666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCC
Q 040261 223 EMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR---PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGC 299 (343)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 299 (343)
...... +++...+ .++..+...++.++|...++.+.+.... .+...+..+...|...|++++|...+++..+..
T Consensus 169 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 245 (275)
T 1xnf_A 169 QHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN- 245 (275)
T ss_dssp HHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 655542 2333333 2555555666666666666665443210 114566777777777788888888877777653
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHH
Q 040261 300 MRDVFSYGILINGYCKNKEIEGALSLY 326 (343)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 326 (343)
|+. +.....++...|++++|++.+
T Consensus 246 -p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 -VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CTT--CHHHHHHHHHHHHHHHC----
T ss_pred -chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 321 223344566667777776655
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=8.1e-15 Score=115.00 Aligned_cols=224 Identities=16% Similarity=-0.019 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 040261 51 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA----ESRIMEAAALFTKLRAFGCKPDVFTYT 126 (343)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (343)
+..++..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45566667777777777777777777777632 44566667777777 777777777777777664 566666
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCh
Q 040261 127 TLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK----EGFVDKAKELFLKMKDENINPDV 198 (343)
Q Consensus 127 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 198 (343)
.+...|.. .+++++|...+++..+.+ +..++..+...|.. .+++++|+..+++..+.+ +.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 77777777 777777777777776643 45566667777776 777777777777776654 45
Q ss_pred hhHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHH
Q 040261 199 VTYTSLIRGFCY----ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK----NGKMDEASRLLELMIQIGVRPDASV 270 (343)
Q Consensus 199 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 270 (343)
..+..+...+.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 556666666665 677777777777766653 34555666666666 677777777777766654 2455
Q ss_pred HHHHHHHHhc----CCchHHHHHHHHHHHhCC
Q 040261 271 YNTLMDGFCL----TGRVNRAKELFVSMESNG 298 (343)
Q Consensus 271 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 298 (343)
+..+...|.. .+++++|...+++..+.+
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5666666666 667777777777666654
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=9.3e-16 Score=116.59 Aligned_cols=204 Identities=10% Similarity=-0.051 Sum_probs=119.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.++.++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 355666777777777777777777777766543 3345566666666677777777777777666553 22455566666
Q ss_pred HHHhhc-CcHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHH
Q 040261 95 KGLCAE-SRIMEAAALFTKLRAFGCKPD-VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172 (343)
Q Consensus 95 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (343)
..+... |++++|.+.++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~ 156 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-------PQFPPAFKELART 156 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCchHHHHHHHH
Confidence 666666 666666666666665221222 3455556666666666666666666665543 2334455555555
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 173 LCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
+.+.|++++|...++++.+.....+...+..+...+...|+.+++..+++.+.+.
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666666666666655544321123444445555555555555555555555443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.75 E-value=3.3e-15 Score=115.71 Aligned_cols=201 Identities=11% Similarity=0.019 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchH
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (343)
...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-------SRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHH
Confidence 455666667777777777777777777765422 56667777777777777777777777776654 3345667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040261 167 STITDGLCKEGFVDKAKELFLKMKDENINP-DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245 (343)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (343)
..+...+...|++++|.+.++++...+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 777777777777777777777776622223 35566666777777777777777777777653 3346666777777777
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
.|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777777777776654 445666677777777777777777777777665
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=2.8e-15 Score=113.91 Aligned_cols=200 Identities=11% Similarity=-0.035 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchH
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (343)
...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.... +.+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 79 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------PDSAEIN 79 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChHHH
Confidence 334444455555555555555555555444221 34445555555555555555555555554432 2234445
Q ss_pred HHHHHHHHhc-CChHHHHHHHHHhhhCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040261 167 STITDGLCKE-GFVDKAKELFLKMKDENINP-DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244 (343)
Q Consensus 167 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (343)
..+...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHH
Confidence 5555555555 55555555555554421111 13444455555555555555555555555442 223444555555555
Q ss_pred hCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 040261 245 KNGKMDEASRLLELMIQIGVR-PDASVYNTLMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
..|++++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+
T Consensus 159 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555555555543 2 3444455555555555555555555555543
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=2.5e-16 Score=123.66 Aligned_cols=249 Identities=9% Similarity=-0.039 Sum_probs=193.2
Q ss_pred HHhcCChhHHHHHHHHhHhCCC---CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcH
Q 040261 27 LAKNKHYDTVLSLFKRLNSIGL---FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103 (343)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (343)
+...|++++|+..|+++.+... +.+..++..+..++...|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3456889999999999987532 1245678889999999999999999999999875 33688899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHH
Q 040261 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183 (343)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 183 (343)
++|.+.+++..+.... +...+..+..++...|++++|...++++.... |+.......+..+...|++++|.
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------PNDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCHHHHH
Confidence 9999999999987543 57788999999999999999999999999864 44444555556667789999999
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 040261 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ--P-NVVTFNVIMNELCKNGKMDEASRLLELMI 260 (343)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (343)
..+++..... +++...+ .++..+...++.++|...+....+.... | +...+..+...+...|++++|...++++.
T Consensus 165 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 165 EVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998877653 3344444 4677778888889999999887654211 1 15778889999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 040261 261 QIGVRPDASVYNTLMDGFCLTGRVNRAKELF 291 (343)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (343)
+.. +.+. .....++...|++++|.+.+
T Consensus 243 ~~~-p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANN-VHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTC-CTTC---HHHHHHHHHHHHHHHC----
T ss_pred hCC-chhH---HHHHHHHHHHHHHHhhHHHH
Confidence 864 2232 23345667778888887766
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.74 E-value=4.3e-16 Score=119.99 Aligned_cols=197 Identities=14% Similarity=0.060 Sum_probs=85.8
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHH
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTI 169 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 169 (343)
|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.... +.+..++..+
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l 97 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-------SSAATAYYGA 97 (243)
T ss_dssp ----------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CcchHHHHHH
Confidence 333444444444444444444444443211 33444444444444444444444444444432 2233444444
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 040261 170 TDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM 249 (343)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (343)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 444444555555555544444332 1233444444455555555555555555554442 22344455555555555555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 250 DEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
++|...++++.+.. +.+..++..+...|...|++++|...++++.+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55555555555443 333445555555555555555555555555543
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.74 E-value=5.1e-16 Score=119.58 Aligned_cols=199 Identities=14% Similarity=0.091 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040261 54 TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLC 133 (343)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (343)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 44444455555555555555555555432 223445555555555555555555555555544322 4455555555566
Q ss_pred hcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc
Q 040261 134 RTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213 (343)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (343)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence 6666666666666555543 2344455555566666666666666666655432 2245555666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 040261 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263 (343)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 263 (343)
+++|...++.+.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 666666666666552 3345566666667777777777777777766653
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.8e-16 Score=130.56 Aligned_cols=304 Identities=13% Similarity=0.026 Sum_probs=227.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHHc----CCCc-
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYNILINCFCKMGRVSPGFVVLGRILRS----CFTP- 85 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 85 (343)
.....+......+.+.|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 566678889999999999999999999998764 223 357888899999999999999999987653 1112
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC--------------------hHH
Q 040261 86 DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK-PD----VFTYTTLINGLCRTGH--------------------TIV 140 (343)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~ 140 (343)
...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2557788889999999999999999987654110 11 3477888899999999 999
Q ss_pred HHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCC----hhhHHHHHHHHhccCcHH
Q 040261 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI-NPD----VVTYTSLIRGFCYANDWN 215 (343)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 215 (343)
|...+++........+. .+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 166 A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99999887653210000 112245788888999999999999999998764310 011 347888889999999999
Q ss_pred HHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC----C-CCHHHHHHHHHHHhcCCchH
Q 040261 216 EAKCLFIEMMDQG----VQPN-VVTFNVIMNELCKNGKMDEASRLLELMIQIGV----R-PDASVYNTLMDGFCLTGRVN 285 (343)
Q Consensus 216 ~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~ 285 (343)
+|...+++..+.. ..+. ..++..+...+...|++++|...+++..+... . ....++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999887541 1111 45778889999999999999999998876421 1 11557788899999999999
Q ss_pred HHHHHHHHHHhC----CCC-ccHHHHHHHHHHHHhcCChH
Q 040261 286 RAKELFVSMESN----GCM-RDVFSYGILINGYCKNKEIE 320 (343)
Q Consensus 286 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~ 320 (343)
+|...+++..+. +.. ....++..+...+...|+..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999999987643 211 22456777778888777653
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=7.2e-16 Score=128.41 Aligned_cols=278 Identities=13% Similarity=0.060 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccH----HHHHHHHHHHhhcCcHHHHHHHHHHHHhc----CC-CCCHH
Q 040261 53 YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA----VTFTSLIKGLCAESRIMEAAALFTKLRAF----GC-KPDVF 123 (343)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 123 (343)
..+..+...+...|++++|...|+++.+.... +. ..+..+...+...|++++|.+.+++..+. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34556677788899999999999999886433 32 46778888899999999999999887653 11 12345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC-----------------hHHHHHHH
Q 040261 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF-----------------VDKAKELF 186 (343)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 186 (343)
.+..+...|...|++++|...+++........+. .+....++..+...|...|+ +++|...+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6778888999999999999999887664210000 12234578888899999999 99999998
Q ss_pred HHhhhC----CC-CCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhCCChhHHHHHH
Q 040261 187 LKMKDE----NI-NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ-PN----VVTFNVIMNELCKNGKMDEASRLL 256 (343)
Q Consensus 187 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 256 (343)
++..+. +. +.....+..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 876442 11 112457788889999999999999999988764210 11 237788899999999999999999
Q ss_pred HHHHHcCCC-----CCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC----CC-CccHHHHHHHHHHHHhcCChHHHHHHH
Q 040261 257 ELMIQIGVR-----PDASVYNTLMDGFCLTGRVNRAKELFVSMESN----GC-MRDVFSYGILINGYCKNKEIEGALSLY 326 (343)
Q Consensus 257 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 326 (343)
+++.+.... ....++..+...+...|++++|...+++..+. +. .....++..+...|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 988764211 12567888999999999999999999987653 10 112457788889999999999999999
Q ss_pred HHHHhC
Q 040261 327 SEMLSK 332 (343)
Q Consensus 327 ~~~~~~ 332 (343)
++....
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 54
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.71 E-value=6.7e-15 Score=121.37 Aligned_cols=301 Identities=11% Similarity=-0.037 Sum_probs=211.2
Q ss_pred HHhcCChhHHHHHHHHhHhC--CCCCC--HHHHHHHHHH--HHhcCCcchHH-----------HHHHHHHHcCCCccHHH
Q 040261 27 LAKNKHYDTVLSLFKRLNSI--GLFPD--LYTYNILINC--FCKMGRVSPGF-----------VVLGRILRSCFTPDAVT 89 (343)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 89 (343)
+.+.+++++|..+++++.+. .+..| ...|..++.. ..-.++++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45789999999999998652 22233 3334444332 22223344444 6777765432 12121
Q ss_pred ------HHHHHHHHhhcCcHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 040261 90 ------FTSLIKGLCAESRIMEAAALFTKLRAF----GCKP-DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158 (343)
Q Consensus 90 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 158 (343)
+......+...|++++|...+++..+. +-.+ ...++..+...|...|+++.|...+++........+..
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556678889999999999998764 1111 24578889999999999999999999987653211000
Q ss_pred ccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC-CChhhHHHHHHHHhccCcHHHHHHHHHHHHHc----CC
Q 040261 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE----NIN-PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ----GV 229 (343)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 229 (343)
.+....++..+..+|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 0112357888899999999999999999887643 111 11247888999999999999999999998873 22
Q ss_pred -CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhcCCc---hHHHHHHHHHHHhCCCCc
Q 040261 230 -QPNVVTFNVIMNELCKNGKMDEASRLLELMIQI----GVRPDASVYNTLMDGFCLTGR---VNRAKELFVSMESNGCMR 301 (343)
Q Consensus 230 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~ 301 (343)
+....++..+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++.. ..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHH
Confidence 333667888999999999999999999988764 212223345678888899998 777777776652 223
Q ss_pred -cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 302 -DVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 302 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
....+..+...|...|++++|...+++....
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456778889999999999999999998754
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.1e-15 Score=126.97 Aligned_cols=283 Identities=11% Similarity=0.046 Sum_probs=213.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCcc---HHHHHHHHHHHhhcCcHHHHHHHHHHHHhc----CCCC-
Q 040261 49 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD---AVTFTSLIKGLCAESRIMEAAALFTKLRAF----GCKP- 120 (343)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 120 (343)
......+......+...|++++|...|+++.+...... ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34566777888899999999999999999998743311 357888889999999999999999987543 1111
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC--------------------hH
Q 040261 121 DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF--------------------VD 180 (343)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~ 180 (343)
...++..+...+...|++++|...+++........+. ......++..+...+...|+ ++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456778889999999999999999988764310000 01113478888899999999 99
Q ss_pred HHHHHHHHhhhC----CCC-CChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhCCChh
Q 040261 181 KAKELFLKMKDE----NIN-PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGV-QPN----VVTFNVIMNELCKNGKMD 250 (343)
Q Consensus 181 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 250 (343)
+|...+++.... +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876442 111 1245678888999999999999999998875410 112 237788899999999999
Q ss_pred HHHHHHHHHHHcC----CCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHHhcCChH
Q 040261 251 EASRLLELMIQIG----VRP-DASVYNTLMDGFCLTGRVNRAKELFVSMESN----GCMR-DVFSYGILINGYCKNKEIE 320 (343)
Q Consensus 251 ~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~ 320 (343)
+|...+++..+.. ..+ ...++..+...|...|++++|...+++..+. +..+ ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999887642 111 1567788899999999999999999987653 1111 1557788889999999999
Q ss_pred HHHHHHHHHHhC
Q 040261 321 GALSLYSEMLSK 332 (343)
Q Consensus 321 ~a~~~~~~~~~~ 332 (343)
+|.+.+++....
T Consensus 325 ~A~~~~~~al~~ 336 (406)
T 3sf4_A 325 QAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987643
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=1.1e-15 Score=127.36 Aligned_cols=279 Identities=14% Similarity=0.052 Sum_probs=212.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH----HHHHHHHHHHHhcCCcchHHHHHHHHHHc----C-CCccH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL----YTYNILINCFCKMGRVSPGFVVLGRILRS----C-FTPDA 87 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 87 (343)
...+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+++..+. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445667888899999999999999998864 2233 47888899999999999999999988753 1 12245
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 040261 88 VTFTSLIKGLCAESRIMEAAALFTKLRAFG-----CKPDVFTYTTLINGLCRTGH-----------------TIVALNLF 145 (343)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 145 (343)
.++..+...+...|++++|.+.+++..+.. ......++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 678888899999999999999999876541 11134477888899999999 99999998
Q ss_pred HHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC----hhhHHHHHHHHhccCcHHHHHHH
Q 040261 146 EEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENIN-PD----VVTYTSLIRGFCYANDWNEAKCL 220 (343)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~ 220 (343)
++.......... .+....++..+...+...|++++|...+++..+.... ++ ...+..+..++...|++++|...
T Consensus 207 ~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 207 QENLKLMRDLGD-RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 887553210000 1122357888889999999999999999987653110 11 23788889999999999999999
Q ss_pred HHHHHHcCC--C---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHhcCCchHHHHHH
Q 040261 221 FIEMMDQGV--Q---PNVVTFNVIMNELCKNGKMDEASRLLELMIQIG----V-RPDASVYNTLMDGFCLTGRVNRAKEL 290 (343)
Q Consensus 221 ~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (343)
+++..+... . ....++..+...+...|++++|...+++..+.. . .....++..+...|...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 998876421 0 114677888999999999999999999887641 1 11245778889999999999999999
Q ss_pred HHHHHhC
Q 040261 291 FVSMESN 297 (343)
Q Consensus 291 ~~~~~~~ 297 (343)
+++..+.
T Consensus 366 ~~~al~~ 372 (411)
T 4a1s_A 366 AEQHLQL 372 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998774
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=1.1e-13 Score=110.35 Aligned_cols=219 Identities=10% Similarity=0.019 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHccCCCCCccccCCcchHHHH
Q 040261 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLC-------RTGHT-------IVALNLFEEMANGNGEFGVVCKPDAITYSTI 169 (343)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 169 (343)
++|..+|++.....+. +...|..++..+. +.|++ ++|..+|++....- .+.+...|..+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~------~p~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT------TTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh------CcccHHHHHHH
Confidence 6777788887775332 6667777776665 35776 89999999999841 13456689999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCC-hh-hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hC
Q 040261 170 TDGLCKEGFVDKAKELFLKMKDENINPD-VV-TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC-KN 246 (343)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 246 (343)
+..+.+.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999885 343 33 79999999999999999999999999874 344555544433322 37
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCC-CCc--cHHHHHHHHHHHHhcCChHHHH
Q 040261 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG-CMR--DVFSYGILINGYCKNKEIEGAL 323 (343)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~ 323 (343)
|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|++..... .+| ....|..++....+.|+.++|.
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998874 4578899999999999999999999999999863 344 4678888999999999999999
Q ss_pred HHHHHHHhCC
Q 040261 324 SLYSEMLSKG 333 (343)
Q Consensus 324 ~~~~~~~~~~ 333 (343)
.+++++.+..
T Consensus 262 ~~~~~a~~~~ 271 (308)
T 2ond_A 262 KVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999998663
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=2.2e-15 Score=121.74 Aligned_cols=273 Identities=12% Similarity=0.064 Sum_probs=173.5
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCcc---HHHHHHHHHHHhhcCcHHHHHHHHHHHHhc----CCC-CCHHHHHHHHH
Q 040261 59 INCFCKMGRVSPGFVVLGRILRSCFTPD---AVTFTSLIKGLCAESRIMEAAALFTKLRAF----GCK-PDVFTYTTLIN 130 (343)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 130 (343)
...+...|++++|...++++.+...... ...+..+...+...|++++|.+.+++..+. +.. ....++..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3344444444444444444444321100 233444445555555555555555443321 101 11334556666
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC--------------------hHHHHHHHHHhh
Q 040261 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF--------------------VDKAKELFLKMK 190 (343)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 190 (343)
.+...|++++|...+++........+. ......++..+...+...|+ +++|...+++..
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 677777777777777666543210000 01113367777788888888 888888887764
Q ss_pred hC----CC-CCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 040261 191 DE----NI-NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG----VQP-NVVTFNVIMNELCKNGKMDEASRLLELMI 260 (343)
Q Consensus 191 ~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (343)
.. +. +.....+..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 11 1124567888889999999999999999887541 111 13377888899999999999999999887
Q ss_pred HcCCC-CC----HHHHHHHHHHHhcCCchHHHHHHHHHHHhC----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 261 QIGVR-PD----ASVYNTLMDGFCLTGRVNRAKELFVSMESN----GC-MRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 261 ~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
+.... .+ ..++..+...+...|++++|...+++..+. +. .....++..+...|...|++++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 64111 11 557788889999999999999999987653 11 1124477788999999999999999999998
Q ss_pred hC
Q 040261 331 SK 332 (343)
Q Consensus 331 ~~ 332 (343)
..
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 65
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.67 E-value=1.1e-14 Score=123.19 Aligned_cols=212 Identities=8% Similarity=-0.090 Sum_probs=165.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChH
Q 040261 102 RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT-IVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180 (343)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (343)
.++++++.+++...... .+...+..+...+...|++ ++|.+.|++..+.. +.+..++..+..+|...|+++
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-------PELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHH
Confidence 35666677776665432 3677788888888888888 88888888888765 345678888888888888888
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhcc---------CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----
Q 040261 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYA---------NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN----- 246 (343)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 246 (343)
+|...|++..+.. |+...+..+..++... |++++|...+++..+.. +.+...|..+..++...
T Consensus 155 ~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 155 SAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence 8888888887764 5667788888888888 88888888888888764 44577788888888877
Q ss_pred ---CChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChH
Q 040261 247 ---GKMDEASRLLELMIQIGVR---PDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIE 320 (343)
Q Consensus 247 ---~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (343)
|++++|...|+++.+.. + .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...|+++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 88888888888888864 3 477888888888888888888888888887753 335667777888888888888
Q ss_pred HHHHHH
Q 040261 321 GALSLY 326 (343)
Q Consensus 321 ~a~~~~ 326 (343)
+|++.+
T Consensus 310 eAi~~~ 315 (474)
T 4abn_A 310 SLLESK 315 (474)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887654
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=1.3e-13 Score=110.06 Aligned_cols=218 Identities=10% Similarity=0.049 Sum_probs=96.9
Q ss_pred hHHHHHHHHhHhCCCCCCHHHHHHHHHHHHh-------cCCc-------chHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 040261 34 DTVLSLFKRLNSIGLFPDLYTYNILINCFCK-------MGRV-------SPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99 (343)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (343)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666655532 3345555555555432 3444 4555555555542111133445555555555
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH-hcC
Q 040261 100 ESRIMEAAALFTKLRAFGCKPDVF-TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC-KEG 177 (343)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 177 (343)
.|++++|.++|++..+..+. +.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-------RTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-------TCCTHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHcC
Confidence 55555555555555543211 121 44555555555555555555555555432 122222322222211 134
Q ss_pred ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhCCChhHHHH
Q 040261 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG-VQP--NVVTFNVIMNELCKNGKMDEASR 254 (343)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~ 254 (343)
++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..+.. .+| ....|..++....+.|+.+.|..
T Consensus 184 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 184 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555555544443321 1233444444444444444444444444444431 122 12334444444444444444444
Q ss_pred HHHHHHH
Q 040261 255 LLELMIQ 261 (343)
Q Consensus 255 ~~~~~~~ 261 (343)
+++++.+
T Consensus 263 ~~~~a~~ 269 (308)
T 2ond_A 263 VEKRRFT 269 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.67 E-value=3.6e-15 Score=120.45 Aligned_cols=279 Identities=13% Similarity=0.053 Sum_probs=210.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHHc----CCC-ccH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYNILINCFCKMGRVSPGFVVLGRILRS----CFT-PDA 87 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 87 (343)
...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++.... +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 4456677888999999999999999998764 223 357888899999999999999999987653 111 235
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHH
Q 040261 88 VTFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPD----VFTYTTLINGLCRTGH--------------------TIVAL 142 (343)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 142 (343)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6778888999999999999999998765311 112 3367788889999999 99999
Q ss_pred HHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-CCChhhHHHHHHHHhccCcHHHH
Q 040261 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE----NI-NPDVVTYTSLIRGFCYANDWNEA 217 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a 217 (343)
..+++......... ..+....++..+...+...|++++|...+++..+. +. .....++..+...+...|++++|
T Consensus 164 ~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 164 DLYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99888754311000 01122457788889999999999999999887643 11 11133778888999999999999
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHhcCCchHHH
Q 040261 218 KCLFIEMMDQGV-QPN----VVTFNVIMNELCKNGKMDEASRLLELMIQIG----VR-PDASVYNTLMDGFCLTGRVNRA 287 (343)
Q Consensus 218 ~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a 287 (343)
...+++..+... ..+ ..++..+...+...|++++|...++++.+.. .+ ....++..+...|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 999998875411 111 4577788899999999999999999887641 11 1244777889999999999999
Q ss_pred HHHHHHHHhC
Q 040261 288 KELFVSMESN 297 (343)
Q Consensus 288 ~~~~~~~~~~ 297 (343)
...+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=2.6e-14 Score=105.09 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=132.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.++.+|..+...+.+.|++++|+..|++..+.. |-+..++..+..++.+.|++++|...+......... +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 367788888888888888888888888887765 446778888888888888888888888888776433 566677777
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
..+...++++.+.+.+.+....... +...+..+..++.+.|++++|++.+++..+.. +.+..++..+..+|.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-------PGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-------chhhhHHHHHHHHHH
Confidence 7788888888888888888776433 66777788888888888888888888888764 445677888888888
Q ss_pred hcCChHHHHHHHHHhhhC
Q 040261 175 KEGFVDKAKELFLKMKDE 192 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~ 192 (343)
+.|++++|+..|++..+.
T Consensus 153 ~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHhC
Confidence 888888888888887764
No 63
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=2.6e-13 Score=123.06 Aligned_cols=253 Identities=13% Similarity=0.191 Sum_probs=177.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCc
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (343)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 4566667777777777777642 11222233322 556777777777654 246677888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHH
Q 040261 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182 (343)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 182 (343)
+++|++.|.+. -|...|..++.++.+.|++++|.+++....+.. +++...+.++.+|.+.+++++.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--------~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------ccccccHHHHHHHHhhcCHHHH
Confidence 88888888653 267777888888888888888888888777643 3333444578888888887754
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 183 KELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
.... . .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.
T Consensus 1187 e~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--- 1247 (1630)
T 1xi4_A 1187 EEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--- 1247 (1630)
T ss_pred HHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh---
Confidence 4332 1 245566777888888888888888888874 36778888888888888888888776
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+
T Consensus 1248 ---~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 24567777777777777777777665543 2355566677888888888888888887766
No 64
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.64 E-value=2.4e-13 Score=111.84 Aligned_cols=314 Identities=11% Similarity=-0.021 Sum_probs=214.3
Q ss_pred CChhhHHHHHHHH--HhcCChhHHHHHHHHhHhC--CCCCC--HHHHHHHHHH--HHhcCCcchHH---------HHHHH
Q 040261 15 PPVCSFNILFGCL--AKNKHYDTVLSLFKRLNSI--GLFPD--LYTYNILINC--FCKMGRVSPGF---------VVLGR 77 (343)
Q Consensus 15 ~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~---------~~~~~ 77 (343)
|+..+=+.+-..| ...+++++|.++++++... .+..| ...|..++.. ..-.+.+..+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4455555555555 7899999999999987542 22223 3344444432 22224444444 67777
Q ss_pred HHHcCCCccH--H--HHHHHHHHHhhcCcHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040261 78 ILRSCFTPDA--V--TFTSLIKGLCAESRIMEAAALFTKLRAFGC-KPD----VFTYTTLINGLCRTGHTIVALNLFEEM 148 (343)
Q Consensus 78 ~~~~~~~~~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 148 (343)
+.....+.+. . .+......+...|++++|+..+++..+... .++ ..++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6543211111 1 223344556788999999999999876421 122 446778899999999999999999988
Q ss_pred HccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC-CChhhHHHHHHHHhccCcHHHHHHHHHH
Q 040261 149 ANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE----NIN-PDVVTYTSLIRGFCYANDWNEAKCLFIE 223 (343)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (343)
................++..+..+|...|++++|.+.+++..+. +.+ ....++..+..+|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 76431100000112457788899999999999999999887652 111 1235678888999999999999999999
Q ss_pred HHHc----CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHhcCCc---hHHHHHHHH
Q 040261 224 MMDQ----GVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG----VRPDASVYNTLMDGFCLTGR---VNRAKELFV 292 (343)
Q Consensus 224 ~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 292 (343)
..+. +.+....++..+..++.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|...++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8872 223336778889999999999999999999998752 12224456667777888888 777777776
Q ss_pred HHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 293 SMESNGCMR-DVFSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 293 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
+. +..+ ....+..+...|...|++++|...|++...
T Consensus 328 ~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 328 KK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 53 2223 344667788999999999999999998864
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=1.5e-13 Score=100.92 Aligned_cols=165 Identities=13% Similarity=0.060 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhH
Q 040261 122 VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTY 201 (343)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 201 (343)
...|..+...|...|++++|++.|++..+.. |.+..++..+..++.+.|++++|...+....... +.+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 76 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAY 76 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHH
Confidence 4445555555555555555555555555543 2334455555555555555555555555554432 1234444
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 040261 202 TSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281 (343)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (343)
..+...+...++++.+...+....+.. +.+...+..+..++.+.|++++|+..|++..+.. +.+..++..+..+|.+.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHC
Confidence 444455555555555555555555442 2234445555555555555555555555555543 33444555555555555
Q ss_pred CchHHHHHHHHHHHh
Q 040261 282 GRVNRAKELFVSMES 296 (343)
Q Consensus 282 ~~~~~a~~~~~~~~~ 296 (343)
|++++|.+.|++..+
T Consensus 155 g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 155 GLRDEAVKYFKKALE 169 (184)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 555555555555554
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.64 E-value=2.6e-14 Score=120.88 Aligned_cols=213 Identities=8% Similarity=-0.027 Sum_probs=172.1
Q ss_pred hhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHH
Q 040261 33 YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV-SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111 (343)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 111 (343)
+++++..++...... +.+...+..+..++...|++ ++|.+.|++.++... .+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666777665533 45788899999999999999 999999999998753 368899999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhc------
Q 040261 112 KLRAFGCKPDVFTYTTLINGLCRT---------GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE------ 176 (343)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 176 (343)
+..+.. |+...+..+..++... |++++|...+++..+.. +.+...|..+..+|...
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-------VLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHhhcc
Confidence 999874 6678899999999999 99999999999999875 45677888888888888
Q ss_pred --CChHHHHHHHHHhhhCCCC--CChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHH
Q 040261 177 --GFVDKAKELFLKMKDENIN--PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEA 252 (343)
Q Consensus 177 --~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 252 (343)
|++++|+..|++..+.... .+...|..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888775310 367778888888888888888888888887763 33456677777777777777777
Q ss_pred HHHHH
Q 040261 253 SRLLE 257 (343)
Q Consensus 253 ~~~~~ 257 (343)
...+.
T Consensus 312 i~~~~ 316 (474)
T 4abn_A 312 LESKG 316 (474)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 66543
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=9.1e-15 Score=116.84 Aligned_cols=246 Identities=13% Similarity=0.039 Sum_probs=163.0
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-Cc
Q 040261 86 DAVTFTSLIKGLCAESRIMEAAALFTKLRAF-------GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF-GV 157 (343)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 157 (343)
+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...+++........ +.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666777777777777777777776652 122234566677777888888888888887776541000 00
Q ss_pred cccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC------C-CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc---
Q 040261 158 VCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE------N-INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ--- 227 (343)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 227 (343)
..+....++..+...+...|++++|...++++.+. + .+.....+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 01334567888999999999999999999987653 1 1224566888899999999999999999998765
Q ss_pred ---CCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC-------CCCC-------HHHHHHHHHHHhcCCchHHHHH
Q 040261 228 ---GVQP-NVVTFNVIMNELCKNGKMDEASRLLELMIQIG-------VRPD-------ASVYNTLMDGFCLTGRVNRAKE 289 (343)
Q Consensus 228 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~~~~~~a~~ 289 (343)
+..| ...++..+...+...|++++|...++++.+.. ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2123 24577888999999999999999999988631 1111 1222333334445566667777
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 290 LFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.++...... +....++..+...|.+.|++++|.+.+++.++.
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777766542 345678889999999999999999999998754
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=121.25 Aligned_cols=177 Identities=15% Similarity=0.045 Sum_probs=137.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc------
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSI-------GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS------ 81 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 81 (343)
....++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999998763 22334567888999999999999999999998864
Q ss_pred CC-CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 040261 82 CF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF------GCKP-DVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153 (343)
Q Consensus 82 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 153 (343)
+- +....++..+...+...|++++|.+.+++..+. +..| ....+..+...+...|++++|...++++.....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 224667888999999999999999999998765 2222 345678889999999999999999999877510
Q ss_pred CC-CccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 040261 154 EF-GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD 191 (343)
Q Consensus 154 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (343)
.. +...+....++..+..++...|++++|...++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 000122345678888899999999999999988765
No 69
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.62 E-value=3.2e-12 Score=116.18 Aligned_cols=266 Identities=14% Similarity=0.134 Sum_probs=188.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.++.+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|.+++....+.. ++......++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 45667778888888888888888887553 356677777888888888888888887766653 2322333477
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
.+|++.+++++...+. + .++...+..+...|...|++++|..+|... ..|..+..++.
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------------~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLV 1232 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------------hHHHHHHHHHH
Confidence 7777777776533332 1 245566667778888888888888887773 25777888888
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 040261 175 KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (343)
+.|++++|.+.+++.. +..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.
T Consensus 1233 kLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred HhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887662 457788888888888888877776553 23456667788999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcC--CchHHHHHHHHHHHhCCCCc------cHHHHHHHHHHHHhcCChHHHHH
Q 040261 255 LLELMIQIGVRPDASVYNTLMDGFCLT--GRVNRAKELFVSMESNGCMR------DVFSYGILINGYCKNKEIEGALS 324 (343)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 324 (343)
+++...... +-....|+.+...|++. ++..++.+.|..-.. ++| +...|.-++..|.+.|+++.|..
T Consensus 1302 LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1302 MLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 998887765 45566777777777664 345555555543222 222 45678889999999999999884
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=9.6e-13 Score=110.57 Aligned_cols=220 Identities=9% Similarity=-0.013 Sum_probs=158.0
Q ss_pred HHHHHHHHHhhcCcH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCCCCccccC
Q 040261 89 TFTSLIKGLCAESRI----MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG---HTIVALNLFEEMANGNGEFGVVCKP 161 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (343)
....+...|...+.+ +.+..++...... ++..+..+...|...| +.++|+++|++..+.+ ++
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-------~~ 211 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-------TV 211 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-------CS
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-------CH
Confidence 344445555555533 3333344333322 3337788888888899 8999999999998876 44
Q ss_pred CcchHHHHHHHHHhc----CChHHHHHHHHHhhhCCCCCChhhHHHHHHH-H--hccCcHHHHHHHHHHHHHcCCCCCHH
Q 040261 162 DAITYSTITDGLCKE----GFVDKAKELFLKMKDENINPDVVTYTSLIRG-F--CYANDWNEAKCLFIEMMDQGVQPNVV 234 (343)
Q Consensus 162 ~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~ 234 (343)
+...+..+..+|... +++++|..+|++.. .| +...+..+... + ...+++++|...+++..+.| +..
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 555556777777655 78999999999987 33 56666666666 4 56889999999999998876 566
Q ss_pred HHHHHHHHHHhCC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCchHHHHHHHHHHHhCCCCccHHH
Q 040261 235 TFNVIMNELCKNG-----KMDEASRLLELMIQIGVRPDASVYNTLMDGFCL----TGRVNRAKELFVSMESNGCMRDVFS 305 (343)
Q Consensus 235 ~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (343)
.+..+...|. .| ++++|..+|++.. .| +......|...|.. ..++++|...|++..+.| +...
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A 356 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSA 356 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHH
Confidence 7777777776 45 8999999999887 43 56677777777766 348999999999998876 3445
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 040261 306 YGILINGYCK----NKEIEGALSLYSEMLSKGI 334 (343)
Q Consensus 306 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 334 (343)
...|...|.. .+++++|..+|+...+.|.
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5566666654 4588899999888877663
No 71
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=4.8e-12 Score=108.86 Aligned_cols=218 Identities=10% Similarity=0.054 Sum_probs=167.7
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhh-------cCcHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040261 70 PGFVVLGRILRSCFTPDAVTFTSLIKGLCA-------ESRIM-------EAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135 (343)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (343)
.+..+|++.+... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3445566665543 2356677777777765 68876 8999999998621233688899999999999
Q ss_pred CChHHHHHHHHHHHccCCCCCccccCCc-chHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHH-HhccCc
Q 040261 136 GHTIVALNLFEEMANGNGEFGVVCKPDA-ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRG-FCYAND 213 (343)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 213 (343)
|++++|..+|+++.+.. +.+. ..|..++..+.+.|+.++|..+|++..+.. +.+...|...... +...|+
T Consensus 335 g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp TCHHHHHHHHHHHHHSS-------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHhCcc-------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCC
Confidence 99999999999999854 2232 478888999999999999999999998753 2233333332222 335899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHhcCCchHHHHHH
Q 040261 214 WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV-RP--DASVYNTLMDGFCLTGRVNRAKEL 290 (343)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~ 290 (343)
.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|+++...+. .| ....|...+......|+.+.+..+
T Consensus 407 ~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 407 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 485 (530)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998873 44578899999999999999999999999998642 23 255888888888899999999999
Q ss_pred HHHHHhC
Q 040261 291 FVSMESN 297 (343)
Q Consensus 291 ~~~~~~~ 297 (343)
.+++.+.
T Consensus 486 ~~r~~~~ 492 (530)
T 2ooe_A 486 EKRRFTA 492 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988774
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=1.4e-13 Score=115.69 Aligned_cols=286 Identities=14% Similarity=0.029 Sum_probs=166.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRV---SPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (343)
+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|..+|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455556666666666666655544 222333344444445555 5666666655532 33334444443333
Q ss_pred cC-----cHHHHHHHHHHHHhcCCCC--------------------------------CHHHHHHHHHHHHhcCChHHHH
Q 040261 100 ES-----RIMEAAALFTKLRAFGCKP--------------------------------DVFTYTTLINGLCRTGHTIVAL 142 (343)
Q Consensus 100 ~~-----~~~~a~~~~~~~~~~~~~~--------------------------------~~~~~~~l~~~~~~~~~~~~a~ 142 (343)
.+ ++++|++.|++..+.|... +......+...|...+.++++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 32 5556666666655543221 1222333444444444333333
Q ss_pred HHHHHHHccCCCCCccccCCcchHHHHHHHHHhcC---ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc----CcHH
Q 040261 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG---FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA----NDWN 215 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 215 (343)
.....+.... ...++..+..+..+|...| +.++|+..|++..+.|. ++...+..+...|... ++++
T Consensus 162 ~~a~~~~~~a------~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 162 DDVERICKAA------LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp HHHHHHHHHH------TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred HHHHHHHHHH------HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHH
Confidence 2222221111 1223448888888898899 89999999999988873 4555556677777655 7899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-----chHHH
Q 040261 216 EAKCLFIEMMDQGVQPNVVTFNVIMNE-L--CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG-----RVNRA 287 (343)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a 287 (343)
+|...|+... .| +...+..+... + ...+++++|..+|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999987 33 45566666666 4 56889999999999999876 5667777777776 44 99999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 040261 288 KELFVSMESNGCMRDVFSYGILINGYCK----NKEIEGALSLYSEMLSKGI 334 (343)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 334 (343)
...|++.. . -++.....|...|.. ..++++|..+|++..+.|.
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 99999887 4 366777777777766 3489999999999887764
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.59 E-value=8.1e-14 Score=122.56 Aligned_cols=169 Identities=12% Similarity=0.040 Sum_probs=150.8
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHH
Q 040261 13 SPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92 (343)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (343)
.|.++.+|+.+...+.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|++.|++.++.... +...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 35678899999999999999999999999998865 446789999999999999999999999999987533 6889999
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHH
Q 040261 93 LIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDG 172 (343)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (343)
+..++.+.|++++|++.|++..+.... +..++..+..+|...|++++|++.|++..+.. +.+...+..+..+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhhhH
Confidence 999999999999999999999988544 68899999999999999999999999999875 4567889999999
Q ss_pred HHhcCChHHHHHHHHHhhh
Q 040261 173 LCKEGFVDKAKELFLKMKD 191 (343)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~ 191 (343)
+...|++++|.+.++++.+
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 9999999999999887654
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=3e-13 Score=111.46 Aligned_cols=235 Identities=9% Similarity=-0.067 Sum_probs=176.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHc----CCCc-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-C-----CHHHHH
Q 040261 58 LINCFCKMGRVSPGFVVLGRILRS----CFTP-DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCK-P-----DVFTYT 126 (343)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 126 (343)
....+...|++++|...+++..+. +-.+ ...++..+...+...|++++|...+++..+.-.. + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999999864 1111 3467888999999999999999999987754111 1 234678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-CCChhhH
Q 040261 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE----NI-NPDVVTY 201 (343)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 201 (343)
.+..+|...|++++|...+++........+. .+....++..+..+|...|++++|...+++..+. +. +....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQ-PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8889999999999999999998764310000 0111247888999999999999999999988662 22 3346778
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHcCCCC-CHHHHHH
Q 040261 202 TSLIRGFCYANDWNEAKCLFIEMMDQ----GVQPNVVTFNVIMNELCKNGK---MDEASRLLELMIQIGVRP-DASVYNT 273 (343)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~ 273 (343)
..+..++...|++++|...+++..+. +.+.....+..+...+...|+ .++|..++++. +..| ....+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 88999999999999999999988754 212223345677888888998 66677776665 2222 3456778
Q ss_pred HHHHHhcCCchHHHHHHHHHHHh
Q 040261 274 LMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
+...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999998765
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.58 E-value=2.3e-12 Score=105.81 Aligned_cols=276 Identities=11% Similarity=-0.002 Sum_probs=196.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH----HHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-cc----HHH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY----TYNILINCFCKMGRVSPGFVVLGRILRSCFT-PD----AVT 89 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 89 (343)
........+...|++++|...+++........+.. ++..+...+...|+++.|...+++....... .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44556667778999999999999987654222222 4666777888999999999999988753211 11 233
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCC
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAF----GCK--P-DVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (343)
+..+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++........+. +..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~ 173 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--QQQ 173 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--GGG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc--HHH
Confidence 566778888999999999999987653 221 2 2345667888899999999999999998876532211 112
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-hhhHH-----HHHHHHhccCcHHHHHHHHHHHHHcCCCCC---H
Q 040261 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPD-VVTYT-----SLIRGFCYANDWNEAKCLFIEMMDQGVQPN---V 233 (343)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 233 (343)
..++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++........+. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 34677788899999999999999998764311111 11121 233447789999999999988775432111 2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQI----GVRPDA-SVYNTLMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
..+..+...+...|++++|...++.+... +..++. ..+..+..++...|+.++|...+++...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34567788899999999999999988653 212222 3666777888999999999999988765
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.56 E-value=4.3e-12 Score=104.17 Aligned_cols=277 Identities=12% Similarity=0.010 Sum_probs=194.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHH----HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-CC----HHHH
Q 040261 55 YNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV----TFTSLIKGLCAESRIMEAAALFTKLRAFGCK-PD----VFTY 125 (343)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 125 (343)
.......+...|++++|...+++........+.. .++.+...+...|++++|.+.+++....... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778899999999999988764322222 4566777888899999999999987653111 12 2235
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccC-CcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCC----CChhh
Q 040261 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP-DAITYSTITDGLCKEGFVDKAKELFLKMKDENIN----PDVVT 200 (343)
Q Consensus 126 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 200 (343)
..+...+...|++++|...+++........+....| ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667788999999999999999887643110000001 2345667788899999999999999987653211 12356
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHH
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN--VVTFN----VIMNELCKNGKMDEASRLLELMIQIGVRP---DASVY 271 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 271 (343)
+..+...+...|++++|...+++..+....++ ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788889999999999999999876421221 11111 23344778999999999999887643211 13356
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHhC----CCCccH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 272 NTLMDGFCLTGRVNRAKELFVSMESN----GCMRDV-FSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
..+...+...|++++|...+++.... |..++. ..+..+..++...|++++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77888999999999999999887542 222222 3666777889999999999999988764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=1.2e-12 Score=95.93 Aligned_cols=167 Identities=17% Similarity=0.048 Sum_probs=141.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35678888999999999999999999987754 4567788889999999999999999999998874 336778888889
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHh
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (343)
.+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.... +.+..++..+...+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHH
Confidence 99999999999999999888743 367788888999999999999999999988864 4456788888899999
Q ss_pred cCChHHHHHHHHHhhhC
Q 040261 176 EGFVDKAKELFLKMKDE 192 (343)
Q Consensus 176 ~~~~~~a~~~~~~~~~~ 192 (343)
.|++++|...+++..+.
T Consensus 157 ~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 157 MGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 99999999999887654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=1.8e-12 Score=98.69 Aligned_cols=208 Identities=9% Similarity=-0.025 Sum_probs=161.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHH
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (343)
+.++..+......+.+.|++++|+..|++..+...+++...+..+..++...|++++|.+.+++..+..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 45778999999999999999999999999988763377888888999999999999999999999987533 67888999
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccC--Ccc
Q 040261 94 IKGLCAESRIMEAAALFTKLRAFGCKPDV-------FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP--DAI 164 (343)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~ 164 (343)
..++...|++++|++.+++..+..+. +. ..|..+...+...|++++|...+++..+.. +. +..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 154 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-------SKKWKTD 154 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-------CHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-------CCcccHH
Confidence 99999999999999999999987533 44 457788889999999999999999999864 33 456
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040261 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVI 239 (343)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (343)
.+..+..++...| ...++++...+ ..+...|.... ....+.+++|...+++..+.. +-+..+...+
T Consensus 155 ~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 155 ALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 7777777776544 34455554443 22344444433 344577899999999999873 2234444433
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.54 E-value=2.2e-12 Score=94.61 Aligned_cols=167 Identities=17% Similarity=0.061 Sum_probs=146.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040261 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242 (343)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (343)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778888999999999999999987754 3467888999999999999999999999998874 4567888889999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHH
Q 040261 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGA 322 (343)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 322 (343)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999875 5678889999999999999999999999988764 44678899999999999999999
Q ss_pred HHHHHHHHhCC
Q 040261 323 LSLYSEMLSKG 333 (343)
Q Consensus 323 ~~~~~~~~~~~ 333 (343)
...++++....
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99999988653
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.53 E-value=9.9e-13 Score=115.73 Aligned_cols=169 Identities=14% Similarity=0.044 Sum_probs=149.8
Q ss_pred ccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHH
Q 040261 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238 (343)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 238 (343)
.|.+..+++.+..++.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+++.++.. +-+...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34567899999999999999999999999998864 3357889999999999999999999999999874 345789999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC
Q 040261 239 IMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318 (343)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (343)
+..++...|++++|++.|+++++.. +-+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 9999999999999999999999985 5578899999999999999999999999998864 3467889999999999999
Q ss_pred hHHHHHHHHHHHh
Q 040261 319 IEGALSLYSEMLS 331 (343)
Q Consensus 319 ~~~a~~~~~~~~~ 331 (343)
+++|.+.++++++
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=9.7e-12 Score=94.58 Aligned_cols=208 Identities=13% Similarity=0.014 Sum_probs=160.6
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040261 50 PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129 (343)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (343)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|++.+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888899999999999999999999998865467778878999999999999999999999987544 667888999
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCccccCCc-------chHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---hh
Q 040261 130 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA-------ITYSTITDGLCKEGFVDKAKELFLKMKDENINPD---VV 199 (343)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~ 199 (343)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|++..+.. |+ ..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 154 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTD 154 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHH
Confidence 99999999999999999999865 3334 457888889999999999999999998863 43 56
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 276 (343)
.+..+..++...| ...++.+...+ ..+...|.... ....+.+++|...+++..+.. +-+..+...+..
T Consensus 155 ~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 155 ALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 6777777775544 34455555443 33344444433 334577899999999999875 444555544433
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.46 E-value=1.5e-12 Score=102.30 Aligned_cols=200 Identities=13% Similarity=0.032 Sum_probs=146.3
Q ss_pred HhcCChHHHHHHHHHHHccCCCCC-ccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC------C-CCCChhhHHHH
Q 040261 133 CRTGHTIVALNLFEEMANGNGEFG-VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE------N-INPDVVTYTSL 204 (343)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 204 (343)
...|++++|...+++..+...... ...+....++..+...+...|++++|...++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666665544210000 001334567888899999999999999999887653 1 12345678888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc------C-CCCCHHH
Q 040261 205 IRGFCYANDWNEAKCLFIEMMDQ------GV-QPNVVTFNVIMNELCKNGKMDEASRLLELMIQI------G-VRPDASV 270 (343)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 270 (343)
..++...|++++|...++++.+. .. +.....+..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 223567788889999999999999999988775 1 1223567
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhC------------------------------------------------CCCcc
Q 040261 271 YNTLMDGFCLTGRVNRAKELFVSMESN------------------------------------------------GCMRD 302 (343)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------------------------~~~~~ 302 (343)
+..+...|...|++++|...+++..+. ..+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888899999999999999999887653 11223
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 303 VFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
..++..+...|...|++++|...+++.++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457788899999999999999999998753
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=1.2e-11 Score=101.68 Aligned_cols=230 Identities=10% Similarity=0.021 Sum_probs=146.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCC-CC----CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC-----Cc-cHHHH
Q 040261 22 ILFGCLAKNKHYDTVLSLFKRLNSIGL-FP----DLYTYNILINCFCKMGRVSPGFVVLGRILRSCF-----TP-DAVTF 90 (343)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 90 (343)
.....+...|++++|+..|++..+... .+ ...++..+..++...|+++.|...+++..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345566778888888888888765311 12 234677788888888888888888888765311 11 24567
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCCcccc
Q 040261 91 TSLIKGLCAESRIMEAAALFTKLRAF----GCK-PDVFTYTTLINGLCRTGHTIVALNLFEEMAN-----GNGEFGVVCK 160 (343)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 160 (343)
+.+...+...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+++... .. +
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-------~ 258 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-------D 258 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-------G
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-------h
Confidence 77788888888888888888876653 111 1134566777788888888888888887766 32 2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC----CCCChhhHHHHHHHHhccCc---HHHHHHHHHHHHHcCCCCC-
Q 040261 161 PDAITYSTITDGLCKEGFVDKAKELFLKMKDEN----INPDVVTYTSLIRGFCYAND---WNEAKCLFIEMMDQGVQPN- 232 (343)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~- 232 (343)
....++..+..++.+.|++++|...+++..+.. .+.....+..+...+...++ +.+|...++. .+..|+
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~ 335 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYI 335 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHH
Confidence 235667777777888888888888887765431 11122334555555556666 5555555544 221222
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 233 VVTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
...+..+...|...|++++|...+++..+
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445566666677777777777666654
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=1.8e-12 Score=101.89 Aligned_cols=234 Identities=13% Similarity=0.021 Sum_probs=157.6
Q ss_pred HhcCChhHHHHHHHHhHhC-------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc------CC-CccHHHHHHH
Q 040261 28 AKNKHYDTVLSLFKRLNSI-------GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS------CF-TPDAVTFTSL 93 (343)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 93 (343)
...|++++|+..+++..+. ..+....++..+...+...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777777777766541 22234567888999999999999999999998864 21 2245678889
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhc------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-CccccCCcch
Q 040261 94 IKGLCAESRIMEAAALFTKLRAF------GC-KPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCKPDAIT 165 (343)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~ 165 (343)
...+...|++++|.+.+++..+. .. +....++..+...+...|++++|...++++....... +...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 11 2235678889999999999999999999987751000 0001223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhC-------CCCCC-hhhHHHHHHHHhccCc------HHHHHHHHHHHHHcCCCC
Q 040261 166 YSTITDGLCKEGFVDKAKELFLKMKDE-------NINPD-VVTYTSLIRGFCYAND------WNEAKCLFIEMMDQGVQP 231 (343)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~ 231 (343)
+..+..++...|++++|...+++..+. ...+. ...+..+...+...+. +..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999987653 11222 2233333333332222 2223222222111 1122
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
...++..+...+...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888999999999999999999988764
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.44 E-value=3e-10 Score=88.40 Aligned_cols=249 Identities=10% Similarity=0.034 Sum_probs=171.1
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcH
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (343)
+.-..-.|++..++.-...+.. ......-.-+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 3444567999988884333321 22233444466888888887752 12234444444444443 322
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHH
Q 040261 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183 (343)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 183 (343)
|+..+++..+.+ .++..++..+..++...|++++|++++.+....+. ...+...+...+.++.+.|+.+.|.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 778888887765 44666667888999999999999999999876541 0135677888899999999999999
Q ss_pred HHHHHhhhCCCCC-----ChhhHHHHHHHH--hc--cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 040261 184 ELFLKMKDENINP-----DVVTYTSLIRGF--CY--ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASR 254 (343)
Q Consensus 184 ~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (343)
+.+++|.+. .| +..+...++.++ .. .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|..
T Consensus 157 k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 157 TIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 999999875 35 355556666553 22 34899999999998765 4553444445558889999999999
Q ss_pred HHHHHHHcC---------CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccH
Q 040261 255 LLELMIQIG---------VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303 (343)
Q Consensus 255 ~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 303 (343)
.++.+.+.. -+.++.++..++......|+ +|.++++++.+.. |+.
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~h 286 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEH 286 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCC
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCC
Confidence 999766531 13466677566666666776 8899999999863 543
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=2.9e-09 Score=92.89 Aligned_cols=205 Identities=11% Similarity=0.024 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHH-HHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC------
Q 040261 121 DVFTYTTLINGLCRTGHTIVAL-NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN------ 193 (343)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 193 (343)
....|...+..+...|+.++|. +++++.... +|.+...|...+....+.|+++.|..+|+++....
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-------~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-------IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 4455556666667788888886 999988875 35556667778888889999999999999876531
Q ss_pred ---CCCC------------hhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CChhHHHHHHH
Q 040261 194 ---INPD------------VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN-GKMDEASRLLE 257 (343)
Q Consensus 194 ---~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~ 257 (343)
..|+ ...|...+....+.|+.+.|..+|..+.+....+....|...+..-.+. ++.+.|.++|+
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 0121 2357777787788889999999999998761122344444433333344 45899999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCC--ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 258 LMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM--RDVFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
..++. .+-+...+...+......|+.+.|..+|++....... .....|...+..-.+.|+.+.+.++.+++...-
T Consensus 495 ~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 495 LGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 98887 3556777778888888889999999999999886422 134678888888888999999999999998763
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=6.4e-11 Score=92.03 Aligned_cols=174 Identities=9% Similarity=-0.077 Sum_probs=136.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC--ccHH
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD---LYTYNILINCFCKMGRVSPGFVVLGRILRSCFT--PDAV 88 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 88 (343)
|.++..+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+++++..+. ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4678889999999999999999999999998754 223 568888999999999999999999999986432 2245
Q ss_pred HHHHHHHHHhh--------cCcHHHHHHHHHHHHhcCCCCCHHHH-----------------HHHHHHHHhcCChHHHHH
Q 040261 89 TFTSLIKGLCA--------ESRIMEAAALFTKLRAFGCKPDVFTY-----------------TTLINGLCRTGHTIVALN 143 (343)
Q Consensus 89 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~ 143 (343)
.+..+..++.. .|++++|+..|+++.+..+. +.... ..+...|.+.|++++|..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 67778888888 99999999999999987433 22233 456788999999999999
Q ss_pred HHHHHHccCCCCCccccCCcchHHHHHHHHHhc----------CChHHHHHHHHHhhhCC
Q 040261 144 LFEEMANGNGEFGVVCKPDAITYSTITDGLCKE----------GFVDKAKELFLKMKDEN 193 (343)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~ 193 (343)
.|+++....+. .+.....+..+..+|... |++++|...++++.+..
T Consensus 170 ~~~~~l~~~p~----~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 170 TYEAVFDAYPD----TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHCTT----STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCC----CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99999886521 011234677777777766 78888888888887753
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=2.2e-11 Score=107.54 Aligned_cols=174 Identities=8% Similarity=-0.107 Sum_probs=136.1
Q ss_pred HhcCChhHHHHHHHHhH--------hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 040261 28 AKNKHYDTVLSLFKRLN--------SIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99 (343)
Q Consensus 28 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (343)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.++++.+... .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67889999999999887 432 44567788888889999999999999999888643 367788888888899
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCCh
Q 040261 100 ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFV 179 (343)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (343)
.|++++|++.|++..+.... +...+..+..++.+.|++++ ...|+++.+.+ +.+...+..+..++.+.|++
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCH
Confidence 99999999999998887543 56778888888999999999 99999988865 45667888888999999999
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc
Q 040261 180 DKAKELFLKMKDENINPDVVTYTSLIRGFCYAND 213 (343)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (343)
++|...|++..+.+ +.+...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999998887754 1235667777777766554
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.35 E-value=1.4e-10 Score=79.93 Aligned_cols=129 Identities=18% Similarity=0.270 Sum_probs=82.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL 280 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (343)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4455556666666666666666666543 3345555666666666677777777776666654 3455566666667777
Q ss_pred CCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 281 TGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777666543 234556666777777777777777777776654
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.34 E-value=5.3e-10 Score=87.01 Aligned_cols=245 Identities=10% Similarity=-0.015 Sum_probs=166.1
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 040261 61 CFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIV 140 (343)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (343)
-..-.|++..++.-...+ ........-.-+.+++...|++... ....|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 344568888777633322 1121223333455777777776532 12234444444444333 322
Q ss_pred HHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCChhhHHHHHHHHhccCcHHHHHH
Q 040261 141 ALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI-NPDVVTYTSLIRGFCYANDWNEAKC 219 (343)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 219 (343)
+...+++....+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+
T Consensus 85 a~~~l~~l~~~~-------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDK-------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTS-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 677788776653 34455666888999999999999999999876653 2367788889999999999999999
Q ss_pred HHHHHHHcCCCC-----CHHHHHHHHHHH--HhCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHH
Q 040261 220 LFIEMMDQGVQP-----NVVTFNVIMNEL--CKNG--KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290 (343)
Q Consensus 220 ~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (343)
.++.|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.
T Consensus 158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 99999886 56 355566666553 3334 899999999998765 45533334445589999999999999
Q ss_pred HHHHHhCC---------CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 040261 291 FVSMESNG---------CMRDVFSYGILINGYCKNKEIEGALSLYSEMLSKGIRPT 337 (343)
Q Consensus 291 ~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 337 (343)
++.+.+.. -+.++.+...++......|+ +|.++++++... .|+
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~ 285 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHE 285 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCC
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCC
Confidence 99776531 13466777566666666776 889999999865 454
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.33 E-value=7e-09 Score=81.49 Aligned_cols=237 Identities=7% Similarity=-0.008 Sum_probs=171.9
Q ss_pred HHhcCCc-chHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC--cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hh
Q 040261 62 FCKMGRV-SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES--RIMEAAALFTKLRAFGCKPDVFTYTTLINGL----CR 134 (343)
Q Consensus 62 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 134 (343)
..+.|.. ++|++.++.++..++. +...|+.--..+...+ +++++++.++.+...+++ +..+|+.-...+ ..
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 3344444 5788888888876533 5667777777777777 889999999888887655 455565544444 44
Q ss_pred c---CChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChH--HHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 040261 135 T---GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD--KAKELFLKMKDENINPDVVTYTSLIRGFC 209 (343)
Q Consensus 135 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (343)
. +++++++.+++++.+.+ +.+..+|+.-.-++.+.|.++ ++++.++++.+.+. -+...|+.-.....
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLF 191 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 4 78999999999999876 567788888888888888888 99999999988764 37777877776666
Q ss_pred ccCc------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHhc
Q 040261 210 YAND------WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE-ASRLLELMIQIG--VRPDASVYNTLMDGFCL 280 (343)
Q Consensus 210 ~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 280 (343)
+.+. ++++++.++.+.... +-|...|+.+...+.+.|+... +..+..++.+.+ -+.+...+..+...|.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 6666 888888888888874 5577888888888888777444 555666655432 13467788888888888
Q ss_pred CCchHHHHHHHHHHHhCCCCccHHHHHHH
Q 040261 281 TGRVNRAKELFVSMESNGCMRDVFSYGIL 309 (343)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 309 (343)
.|+.++|.++++.+.+.--+.....|+..
T Consensus 271 ~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 271 QKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 89999999999988763113334444433
No 92
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=1.6e-08 Score=88.32 Aligned_cols=164 Identities=10% Similarity=0.005 Sum_probs=116.6
Q ss_pred HHHHHHHHhcCChHHHH-HHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC---------CCCC----
Q 040261 167 STITDGLCKEGFVDKAK-ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG---------VQPN---- 232 (343)
Q Consensus 167 ~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~---- 232 (343)
...+..+...|+.++|. .+|++.... .+.+...|...+....+.|+++.|..+|+.+.+.. ..|+
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~ 425 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA 425 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 33344445667778886 888888764 34456667777888888899999999999887641 0132
Q ss_pred --------HHHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcC-CchHHHHHHHHHHHhCCCCcc
Q 040261 233 --------VVTFNVIMNELCKNGKMDEASRLLELMIQI-GVRPDASVYNTLMDGFCLT-GRVNRAKELFVSMESNGCMRD 302 (343)
Q Consensus 233 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 302 (343)
..+|...+....+.|+.+.|..+|.++.+. + ......|...+..-.+. ++.+.|..+|+...+. .+.+
T Consensus 426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~ 503 (679)
T 4e6h_A 426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTC
T ss_pred hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCc
Confidence 235777777777888999999999999876 2 22333444333333333 4589999999988876 3456
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 040261 303 VFSYGILINGYCKNKEIEGALSLYSEMLSKG 333 (343)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 333 (343)
...|...++.....|+.+.|..+|++.+...
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 6777788888888899999999999988664
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.32 E-value=3.2e-10 Score=88.09 Aligned_cols=186 Identities=11% Similarity=0.003 Sum_probs=105.5
Q ss_pred cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccC
Q 040261 86 DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD----VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161 (343)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (343)
+...+..+...+.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...|+++....+. .+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~----~~~ 87 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI----DPR 87 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CTT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC----Cch
Confidence 3445555556666666666666666666654 343 345556666666666666666666666664311 011
Q ss_pred CcchHHHHHHHHHh--------cCChHHHHHHHHHhhhCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 040261 162 DAITYSTITDGLCK--------EGFVDKAKELFLKMKDENINPD-VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN 232 (343)
Q Consensus 162 ~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 232 (343)
...++..+..++.. .|++++|+..|+++.+.. |+ ......+.. +..+... .
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~ 147 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----L 147 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----H
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----H
Confidence 12344455555555 666666666666655532 22 111111100 0000000 0
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhcC----------CchHHHHHHHHHHHhC
Q 040261 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVR--PDASVYNTLMDGFCLT----------GRVNRAKELFVSMESN 297 (343)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 297 (343)
...+..+...+.+.|++++|...|+++++.... .....+..+..+|... |++++|...++++.+.
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 011345677888889999999999888876311 1345667777777755 8888999999888875
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=2.1e-10 Score=79.03 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (343)
.+|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 467889999999999999999999998765 4567788889999999999999999999998875 33677888899999
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 98 CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
...|++++|.+.++++.+.... +...+..+...+...|++++|...++++....
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999999887533 67788889999999999999999999987753
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.32 E-value=1.6e-10 Score=86.40 Aligned_cols=190 Identities=9% Similarity=0.017 Sum_probs=97.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD-LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
++..+......+.+.|++++|+..|++..+.. |+ ...|... ..... ..........+.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg 61 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN--------------SEISSKLATELA 61 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch--------------hhhhHHHHHHHH
Confidence 44556666777788889999999988887743 33 3333330 00000 001112223355
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
.++.+.|++++|+..|++..+..+. +...+..+..++...|++++|...|+++.+.. |.+..++..+..+|.
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-------ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 5566666666666666666655332 45556666666666666666666666666543 334455555555554
Q ss_pred hcCC--hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHH
Q 040261 175 KEGF--VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238 (343)
Q Consensus 175 ~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 238 (343)
..|+ .+.+...++.... ..|....+.....++...|++++|...|++..+. .|+......
T Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 4432 2333444433322 1122222333344445556666666666666553 455443333
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.31 E-value=2e-10 Score=85.86 Aligned_cols=139 Identities=10% Similarity=0.013 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHH
Q 040261 126 TTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLI 205 (343)
Q Consensus 126 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (343)
..+..++.+.|++++|...+++..+.. |.+...+..+..++...|++++|...|++..+.. +.+..++..+.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 129 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLG 129 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 348889999999999999999999875 4567899999999999999999999999998865 34678888888
Q ss_pred HHHhccCc--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040261 206 RGFCYAND--WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMD 276 (343)
Q Consensus 206 ~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 276 (343)
.++...|. ...+...++.... ..|....+.....++...|++++|...|+++++. .|+......+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 130 NYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 88766654 4455556655532 2333334445666777889999999999999885 577665555443
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.31 E-value=3.5e-09 Score=83.21 Aligned_cols=235 Identities=6% Similarity=-0.031 Sum_probs=182.9
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHcCCCccHHHHHHHHHHH----hhc--
Q 040261 29 KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG--RVSPGFVVLGRILRSCFTPDAVTFTSLIKGL----CAE-- 100 (343)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 100 (343)
+....++|+.+++.++..+ +-+..+|+.--.++...| +++++++.++.++..+++ +..+|+.....+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 3444579999999999865 345667888888888888 999999999999987644 666777665555 444
Q ss_pred -CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcC
Q 040261 101 -SRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI--VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177 (343)
Q Consensus 101 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (343)
+++++++++++++.+...+ +..+|..-.-++.+.|.++ ++++.++++.+.+ +.+..+|+.-.....+.+
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-------~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-------LKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHSSG
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcc
Confidence 7899999999999998665 8888988888888889888 9999999999876 567788888777777777
Q ss_pred C------hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHH-HHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCC
Q 040261 178 F------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN-EAKCLFIEMMDQG--VQPNVVTFNVIMNELCKNGK 248 (343)
Q Consensus 178 ~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 248 (343)
. ++++++.++++.... +-|...|+.....+.+.|+.. ++..+...+.+.+ -+.+...+..++.++.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 899999999988765 347888888887777777643 3555666555432 13467888899999999999
Q ss_pred hhHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 040261 249 MDEASRLLELMIQ-IGVRPDASVYNTLM 275 (343)
Q Consensus 249 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 275 (343)
.++|.++++.+.+ .+ +.....|+...
T Consensus 274 ~~~A~~~~~~l~~~~D-pir~~yW~~~~ 300 (306)
T 3dra_A 274 YNESRTVYDLLKSKYN-PIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHHHHTTC-GGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 9999999999987 33 44555555443
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=4.2e-10 Score=88.90 Aligned_cols=201 Identities=12% Similarity=0.003 Sum_probs=146.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC---Cc--cH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSI----GLFPD-LYTYNILINCFCKMGRVSPGFVVLGRILRSCF---TP--DA 87 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~ 87 (343)
..|...+..+...|++++|.+.|++..+. |-+++ ..+|+.+..+|.+.|++++|+..+++.++... .+ -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46888888999999999999999987653 31222 46889999999999999999999999876421 11 14
Q ss_pred HHHHHHHHHHhhc-CcHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccC
Q 040261 88 VTFTSLIKGLCAE-SRIMEAAALFTKLRAFGCKP-D----VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161 (343)
Q Consensus 88 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (343)
.+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++|...+++.....+. .+
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~ 192 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG-----NR 192 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS-----CT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-----CC
Confidence 5788889999996 99999999999987642110 1 346788899999999999999999999986521 11
Q ss_pred Cc-----chHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCh------hhHHHHHHHHh--ccCcHHHHHHHHHHHH
Q 040261 162 DA-----ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDV------VTYTSLIRGFC--YANDWNEAKCLFIEMM 225 (343)
Q Consensus 162 ~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 225 (343)
.. ..+..+..++...|++++|...+++..+.. |+. ..+..++.++. ..+++++|...++.+.
T Consensus 193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 11 156777888999999999999999987642 321 12333444443 3456777776665543
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.30 E-value=7.1e-11 Score=104.33 Aligned_cols=173 Identities=11% Similarity=-0.016 Sum_probs=145.8
Q ss_pred HhcCChHHHHHHHHHHH--------ccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHH
Q 040261 133 CRTGHTIVALNLFEEMA--------NGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSL 204 (343)
Q Consensus 133 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 204 (343)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..++++.+.+ +.+...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHH
Confidence 78899999999999998 432 4567788999999999999999999999998764 3367889999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch
Q 040261 205 IRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV 284 (343)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 284 (343)
..++...|++++|...|++..+.. +-+...+..+..++.+.|++++ ...|+++.+.+ +.+...+..+..++.+.|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999874 4457788899999999999999 99999999876 56788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCC
Q 040261 285 NRAKELFVSMESNGCMRD-VFSYGILINGYCKNKE 318 (343)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 318 (343)
++|...|++..+.. |+ ...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 99999999998763 54 5677777777766554
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.30 E-value=1.5e-09 Score=81.41 Aligned_cols=175 Identities=14% Similarity=-0.046 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 040261 71 GFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG----HTIVALNLFE 146 (343)
Q Consensus 71 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 146 (343)
|+++|++..+.| ++..+..+...+...+++++|++.|++..+.| +...+..+...|.. + ++++|.++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444432 34444444555555555555555555554442 33444444444444 3 4555555555
Q ss_pred HHHccCCCCCccccCCcchHHHHHHHHHh----cCChHHHHHHHHHhhhCCCC-CChhhHHHHHHHHhc----cCcHHHH
Q 040261 147 EMANGNGEFGVVCKPDAITYSTITDGLCK----EGFVDKAKELFLKMKDENIN-PDVVTYTSLIRGFCY----ANDWNEA 217 (343)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a 217 (343)
+..+.+ +..++..+...|.. .+++++|+.+|++..+.+.. .....+..+...|.. .+++++|
T Consensus 78 ~A~~~g---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVEAG---------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHTT---------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHCC---------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 554332 33444444444444 45555555555555544310 013444444444444 4455555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhC-C-----ChhHHHHHHHHHHHcC
Q 040261 218 KCLFIEMMDQGVQPNVVTFNVIMNELCKN-G-----KMDEASRLLELMIQIG 263 (343)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 263 (343)
...+++..+. ..+...+..|...|..- | ++++|..+|+...+.|
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5555555443 11223334444444321 1 4555555555555544
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.29 E-value=1e-09 Score=82.27 Aligned_cols=177 Identities=16% Similarity=0.062 Sum_probs=146.5
Q ss_pred HHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccC----cHH
Q 040261 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN----DWN 215 (343)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 215 (343)
+|+++|++..+.+ ++..+..+...|...+++++|+.+|++..+.+ +...+..+...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHH
Confidence 4677788877754 67788889999999999999999999998876 67778888888888 7 899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhc----CCchHH
Q 040261 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCK----NGKMDEASRLLELMIQIGVR-PDASVYNTLMDGFCL----TGRVNR 286 (343)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 286 (343)
+|...+++..+.+ +...+..+...|.. .+++++|..+|++..+.+.. .+...+..|...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 9999999998865 56777888888877 88999999999999987621 126788888888888 789999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 040261 287 AKELFVSMESNGCMRDVFSYGILINGYCKN-K-----EIEGALSLYSEMLSKGI 334 (343)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 334 (343)
|...|++..+. ..+...+..|...|... | ++++|...|++..+.|.
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999886 24555777788887654 3 89999999999988774
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.29 E-value=7.7e-11 Score=85.67 Aligned_cols=167 Identities=13% Similarity=-0.007 Sum_probs=128.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++++..... +...+.....
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~ 81 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAK 81 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHH
Confidence 34567788889999999999999999987654 44677899999999999999999999999877643 4443332221
Q ss_pred H-HhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 96 G-LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 96 ~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
. +...+...+|...+++..+..+. +...+..+..++...|++++|...++++.+..+. ..+...+..+..++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLG-----AQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----TTTTHHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-----cChHHHHHHHHHHHH
Confidence 2 12222334578889888887443 6788889999999999999999999999987521 123558889999999
Q ss_pred hcCChHHHHHHHHHhhh
Q 040261 175 KEGFVDKAKELFLKMKD 191 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~~~ 191 (343)
..|+.++|...|++...
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 99999999999987653
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.28 E-value=2.3e-11 Score=85.80 Aligned_cols=146 Identities=10% Similarity=-0.065 Sum_probs=115.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCc
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (343)
|...+...|++++|+..++...... +.+...+..+...|.+.|++++|.+.|++.++..+. +..+|..+..++.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 5566677889999999999876632 223446677889999999999999999999987533 78899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC
Q 040261 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN-LFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178 (343)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (343)
+++|+..|++..+..+. +..++..+..+|.+.|+++++.+ ++++..+.. |.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-------P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-------PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHhCc
Confidence 99999999999988544 67889999999999999877655 468888764 4456777777777776664
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.28 E-value=5e-10 Score=88.49 Aligned_cols=180 Identities=9% Similarity=-0.039 Sum_probs=125.8
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc----CCCcc-HHHHHHHHHHHhhcCcHHHH
Q 040261 32 HYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS----CFTPD-AVTFTSLIKGLCAESRIMEA 106 (343)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 106 (343)
++++|...|++. ...+...|++++|...|.+.... +-.+. ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777765 44677889999999999988763 21122 56888999999999999999
Q ss_pred HHHHHHHHhcCC---CC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChH
Q 040261 107 AALFTKLRAFGC---KP--DVFTYTTLINGLCRT-GHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD 180 (343)
Q Consensus 107 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (343)
+..+++..+... .+ ...++..+..+|... |++++|+..+++.....+..+. ......++..+...+.+.|+++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHH
Confidence 999998875421 11 134778888999996 9999999999998775310000 0000345777788888888888
Q ss_pred HHHHHHHHhhhCCCCCChh------hHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 181 KAKELFLKMKDENINPDVV------TYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
+|+..|++..+........ .|..+..++...|++++|...+++..+.
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888877653222111 3555666677777777777777776553
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.26 E-value=1.9e-10 Score=90.64 Aligned_cols=165 Identities=16% Similarity=0.026 Sum_probs=82.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHH-HHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTF-TSLI 94 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 94 (343)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44445555555555556666655555555433 2344455555555555555555555555554432 222211 1112
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
..+...++.++|.+.+++.....+. +...+..+...+...|++++|...+.++....+. ..+...+..++..+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-----~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLT-----AADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----GGGGHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----cccchHHHHHHHHHH
Confidence 2233444455555555555554322 4455555555555555555555555555554310 111345555555555
Q ss_pred hcCChHHHHHHHHHh
Q 040261 175 KEGFVDKAKELFLKM 189 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~ 189 (343)
..|+.++|...+++.
T Consensus 267 ~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 267 ALGTGDALASXYRRQ 281 (287)
T ss_dssp HHCTTCHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHH
Confidence 555555555555443
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.25 E-value=2.8e-10 Score=82.69 Aligned_cols=165 Identities=13% Similarity=0.020 Sum_probs=130.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040261 163 AITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242 (343)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (343)
...+......+...|++++|...+++..+.. +.+...+..+..++...|++++|...++.+.+.. |+...+..+...
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence 4456777888999999999999999987653 3367888999999999999999999999987763 344433332222
Q ss_pred -HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChH
Q 040261 243 -LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR-DVFSYGILINGYCKNKEIE 320 (343)
Q Consensus 243 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 320 (343)
+...++...|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 223334455788999998875 5568899999999999999999999999999874322 3568889999999999999
Q ss_pred HHHHHHHHHHh
Q 040261 321 GALSLYSEMLS 331 (343)
Q Consensus 321 ~a~~~~~~~~~ 331 (343)
+|...|++.+.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998764
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=2e-09 Score=81.55 Aligned_cols=187 Identities=11% Similarity=-0.006 Sum_probs=116.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-C-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccH--HHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-P-DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA--VTFT 91 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 91 (343)
++..+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 5567778888999999999999999999875311 1 1357888899999999999999999999986433111 2344
Q ss_pred HHHHHHhh------------------cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 040261 92 SLIKGLCA------------------ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNG 153 (343)
Q Consensus 92 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 153 (343)
.+..++.. .|++++|...|+++.+..+. +...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence 44444443 56888899999888876322 22222111100 0000000
Q ss_pred CCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC--ChhhHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 154 EFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINP--DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
......+...+.+.|++++|+..|+++.+..... ....+..+..++.+.|++++|...++.+...
T Consensus 147 ---------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ---------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 0112234556666777777777777666542110 1244666666777777777777777766654
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.23 E-value=1.4e-10 Score=81.83 Aligned_cols=112 Identities=6% Similarity=0.035 Sum_probs=50.8
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHH
Q 040261 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEAS 253 (343)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 253 (343)
...|++++|+..++...... +-+...+..+...|.+.|++++|...+++.++.. +-+..+|..+..++...|++++|.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHH
Confidence 34444445554444443321 1122333344444555555555555555544442 223444444555555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHH
Q 040261 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAK 288 (343)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (343)
..|+++++.. +-+...+..+...|.+.|++++|.
T Consensus 86 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 86 ECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHH
Confidence 5555554443 223444445555555555544433
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=7.5e-10 Score=87.17 Aligned_cols=158 Identities=15% Similarity=0.033 Sum_probs=66.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhC
Q 040261 168 TITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFN-VIMNELCKN 246 (343)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~ 246 (343)
.+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+. .|+..... .....+...
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhh
Confidence 33333444444444444444443322 112333444444444444444444444443332 12221111 111123334
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCC-ccHHHHHHHHHHHHhcCChHHHHHH
Q 040261 247 GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCM-RDVFSYGILINGYCKNKEIEGALSL 325 (343)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 325 (343)
++.+.|...+++..+.. +.+...+..+...+...|++++|...++++.+.... .+...+..++..+...|+.++|...
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 44444455555444443 334444555555555555555555555555443211 0133445555555555555555555
Q ss_pred HHHH
Q 040261 326 YSEM 329 (343)
Q Consensus 326 ~~~~ 329 (343)
|++.
T Consensus 278 ~r~a 281 (287)
T 3qou_A 278 YRRQ 281 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=6.5e-10 Score=96.45 Aligned_cols=153 Identities=12% Similarity=0.004 Sum_probs=91.6
Q ss_pred CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHH
Q 040261 31 KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALF 110 (343)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 110 (343)
|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56677777777766543 33456677777777777777777777777776542 24666667777777777777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhc---CChHHHHHHHH
Q 040261 111 TKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE---GFVDKAKELFL 187 (343)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~ 187 (343)
++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.++
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------PEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 777666433 45666777777777777777777777776654 33455666677777777 77777777777
Q ss_pred HhhhCC
Q 040261 188 KMKDEN 193 (343)
Q Consensus 188 ~~~~~~ 193 (343)
+..+.+
T Consensus 153 ~al~~~ 158 (568)
T 2vsy_A 153 AAVAQG 158 (568)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 766543
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=4.6e-09 Score=79.53 Aligned_cols=186 Identities=9% Similarity=-0.006 Sum_probs=133.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCc--cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCH--HHHH
Q 040261 51 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP--DAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV--FTYT 126 (343)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 126 (343)
+...+..+...+.+.|++++|...|+++.+..+.. ....+..+..++.+.|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667778899999999999999999864321 2357778889999999999999999999987443211 2444
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 040261 127 TLINGLCR------------------TGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188 (343)
Q Consensus 127 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (343)
.+..++.. .|++++|...|+++.+.. |.+..++....... .+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~----------~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLV----------FLKDR 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHH----------HHHHH
Confidence 44555543 578999999999999875 22333333221111 01111
Q ss_pred hhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 040261 189 MKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN----VVTFNVIMNELCKNGKMDEASRLLELMIQIG 263 (343)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 263 (343)
+ ......+...+.+.|++++|...++.+.+.. |+ ...+..+..++.+.|+.++|...++.+...+
T Consensus 146 ~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 L--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp H--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred H--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1 1112345678889999999999999999873 33 2567888999999999999999999988764
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.18 E-value=1.3e-09 Score=94.50 Aligned_cols=131 Identities=10% Similarity=-0.019 Sum_probs=63.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNEL 243 (343)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (343)
..+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555544432 1234444445555555555555555555554442 22344444455555
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC---CchHHHHHHHHHHHhC
Q 040261 244 CKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT---GRVNRAKELFVSMESN 297 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 297 (343)
...|++++|...++++.+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 55555555555555554443 23344444455555555 5555555555554443
No 113
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.14 E-value=1.8e-07 Score=74.42 Aligned_cols=224 Identities=11% Similarity=0.016 Sum_probs=151.8
Q ss_pred HhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-ChH
Q 040261 63 CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES-RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT-G-HTI 139 (343)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 139 (343)
.+.+..++|++++++++..++. +..+|+..-..+...+ .+++++++++.+....++ +..+|+.-..++.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 3344456788999988887533 5677777777777777 589999999999988665 777887777777766 6 888
Q ss_pred HHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChH--------HHHHHHHHhhhCCCCCChhhHHHHHHHHhcc
Q 040261 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVD--------KAKELFLKMKDENINPDVVTYTSLIRGFCYA 211 (343)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (343)
+++++++++.+.+ +.+..+|+.-..++.+.|.++ ++++.++++.+.+. -|...|+.....+.+.
T Consensus 143 ~EL~~~~k~L~~d-------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HHHHHHHHHTSSC-------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 9999999998875 556777776666666656555 88888888877653 3777788777777776
Q ss_pred Cc-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh--------------------hHHHHHHHHHHHcC-
Q 040261 212 ND-------WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKM--------------------DEASRLLELMIQIG- 263 (343)
Q Consensus 212 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~- 263 (343)
+. ++++++.++++.... +-|...|+.+-..+.+.|.. .........+...+
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL 293 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence 65 678888888887763 45677777766666666554 11222222221111
Q ss_pred ----CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 264 ----VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 264 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
-.++...+..++..|...|+.++|.++++.+.+.
T Consensus 294 ~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 294 PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0245566666667777777777777777776543
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.11 E-value=6.8e-09 Score=82.59 Aligned_cols=229 Identities=11% Similarity=-0.004 Sum_probs=154.4
Q ss_pred hcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhh-cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 040261 64 KMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA-ESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142 (343)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 142 (343)
..|++++|.+++++..+.... . +.. .+++++|...|.+. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 356778888888877654211 1 112 46777777777664 45677889999999
Q ss_pred HHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCC-ChhhHHHHHHHHhccCcHHHH
Q 040261 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE----NINP-DVVTYTSLIRGFCYANDWNEA 217 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 217 (343)
..+.+........+. ......+|..+..+|.+.|++++|+..+++.... |-+. ...++..+..+|.. |++++|
T Consensus 57 ~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 57 DAYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 988887654310000 0111357788888999999999999999886542 2111 13567788888888 999999
Q ss_pred HHHHHHHHHcCCC---C--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCchHHH
Q 040261 218 KCLFIEMMDQGVQ---P--NVVTFNVIMNELCKNGKMDEASRLLELMIQI----GVRPD-ASVYNTLMDGFCLTGRVNRA 287 (343)
Q Consensus 218 ~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 287 (343)
...+++..+.... + ...++..+...+...|++++|+..|++..+. +..+. ...+..+..++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988764111 1 1457788889999999999999999988764 11111 23566677778888999999
Q ss_pred HHHHHHHHhCCCCcc------HHHHHHHHHHHHhcCChHHHHH
Q 040261 288 KELFVSMESNGCMRD------VFSYGILINGYCKNKEIEGALS 324 (343)
Q Consensus 288 ~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~ 324 (343)
...|++.. . .|+ ......++.++ ..|+.+.+.+
T Consensus 215 ~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999987 4 232 12344455555 5566655544
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.11 E-value=1.8e-09 Score=73.49 Aligned_cols=113 Identities=10% Similarity=-0.025 Sum_probs=94.2
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHH
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (343)
|.....+......+.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..+++.++.+. .+...|..+
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l 87 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHH
Confidence 3456788899999999999999999999988765 55788899999999999999999999999998753 367888999
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040261 94 IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129 (343)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (343)
..++...|++++|++.|++..+..+. +......+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~ 122 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVR 122 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHH
Confidence 99999999999999999999987433 454544443
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.11 E-value=1e-07 Score=75.73 Aligned_cols=246 Identities=9% Similarity=0.003 Sum_probs=176.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG-RVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (343)
+++.+.....+.+..++|+++++.++..+ +-+..+|+.--.++...| .++++++.++.++...++ +..+|+.....+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34444444455666789999999999866 445667888888888888 599999999999988644 788888877777
Q ss_pred hhc-C-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHccCCCCCccccCCcchHH
Q 040261 98 CAE-S-RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI--------VALNLFEEMANGNGEFGVVCKPDAITYS 167 (343)
Q Consensus 98 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (343)
.+. + ++++++++++++.+...+ +..+|+--.-++.+.+.++ ++++.++++.+.+ +.|..+|+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------p~N~SAW~ 205 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------GRNNSAWG 205 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-------CCCHHHHH
Confidence 776 6 889999999999988655 7788877666666666666 8999999999876 56788898
Q ss_pred HHHHHHHhcCC-------hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcH--------------------HHHHHH
Q 040261 168 TITDGLCKEGF-------VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW--------------------NEAKCL 220 (343)
Q Consensus 168 ~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~ 220 (343)
.....+.+.+. ++++++.+++..... +-|...|+.+-..+.+.|.. ......
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF 284 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHH
Confidence 88888888876 688899988887764 34677777666555554442 223333
Q ss_pred HHHHHHcC-----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040261 221 FIEMMDQG-----VQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275 (343)
Q Consensus 221 ~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 275 (343)
...+...+ -.++...+..++..|...|+.++|.++++.+.+.--+....-|+-.+
T Consensus 285 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 285 GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp -CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 32232221 13567888899999999999999999999987542233344444333
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.11 E-value=6.5e-07 Score=75.82 Aligned_cols=296 Identities=13% Similarity=0.030 Sum_probs=174.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHHc-CCC-ccHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR-VSPGFVVLGRILRS-CFT-PDAVTFTS 92 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~ 92 (343)
-..+|...+..+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|+..+.. |.. .+...|..
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 34556666655544 6777777777777663 3677777777766655553 34556666666553 322 24566666
Q ss_pred HHHHHh----hcCcHHHHHHHHHHHHhcCCCC------------------------------------------------
Q 040261 93 LIKGLC----AESRIMEAAALFTKLRAFGCKP------------------------------------------------ 120 (343)
Q Consensus 93 l~~~~~----~~~~~~~a~~~~~~~~~~~~~~------------------------------------------------ 120 (343)
.+..+. ..++.+.+.++|++........
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 666543 2345666777777766531110
Q ss_pred CHHHHHHHHHHHHhc--CC-----hHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040261 121 DVFTYTTLINGLCRT--GH-----TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193 (343)
Q Consensus 121 ~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (343)
+...|...+..-... +- .+.+..+|+++.... +.....|...+..+.+.|+.+.|..++++....
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM- 242 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 011122222111111 00 223456677766643 445677888888888999999999999988776
Q ss_pred CCCChhhHH----------------------------------------HHHHHHhccCcHHHHHHHHHHHHHcCCCCCH
Q 040261 194 INPDVVTYT----------------------------------------SLIRGFCYANDWNEAKCLFIEMMDQGVQPNV 233 (343)
Q Consensus 194 ~~~~~~~~~----------------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 233 (343)
+.+...+. ..+....+.++.+.|..+|+.. +.. ..+.
T Consensus 243 -P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~ 319 (493)
T 2uy1_A 243 -SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP 319 (493)
T ss_dssp -CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred -CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence 33322221 1122222345677778888777 321 2234
Q ss_pred HHHHHHHHHHHh-CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 040261 234 VTFNVIMNELCK-NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING 312 (343)
Q Consensus 234 ~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (343)
..|...+..-.. .++.+.|..+|+...+.. +-+...+...++...+.|+.+.|..+|+++. .....|...+..
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~f 393 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEY 393 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 444332222222 236888888888887753 3334556666777777888888888888872 256677777777
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 040261 313 YCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~ 331 (343)
-...|+.+.+.++++++..
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6777888888888887764
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.07 E-value=8.1e-08 Score=75.81 Aligned_cols=165 Identities=10% Similarity=0.026 Sum_probs=108.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCc----chHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC----
Q 040261 127 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDA----ITYSTITDGLCKEGFVDKAKELFLKMKDENIN-PD---- 197 (343)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 197 (343)
..+..+...|++++|...+++...... ..++. ..+..+...+...+++++|+..++++...... ++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 346677888999999999998877542 11221 12334666677778888888888887763222 12
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC
Q 040261 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQ-----GVQPN-VVTFNVIMNELCKNGKMDEASRLLELMIQI----GVRPD 267 (343)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 267 (343)
..+++.+..+|...|++++|...++++.+. +..+. ..++..+..+|.+.|++++|...+++..+. +..+.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 225777778888888888888888877642 11111 236667777788888888888887776653 11111
Q ss_pred -HHHHHHHHHHHhcCCc-hHHHHHHHHHHHh
Q 040261 268 -ASVYNTLMDGFCLTGR-VNRAKELFVSMES 296 (343)
Q Consensus 268 -~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 296 (343)
..++..+..+|.+.|+ +++|...+++...
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5567777777777774 5777777766543
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.05 E-value=1.1e-07 Score=75.10 Aligned_cols=165 Identities=13% Similarity=0.027 Sum_probs=125.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCC-CCCh----hhHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CC----HHHH
Q 040261 167 STITDGLCKEGFVDKAKELFLKMKDENI-NPDV----VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ-PN----VVTF 236 (343)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 236 (343)
...+..+...|++++|...+++..+... .|+. ..+..+...+...+++++|...++.+.+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999877421 2221 13345677778888999999999999984322 22 2368
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHHHhC----CCCc-cHHH
Q 040261 237 NVIMNELCKNGKMDEASRLLELMIQI-----GVRP-DASVYNTLMDGFCLTGRVNRAKELFVSMESN----GCMR-DVFS 305 (343)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 305 (343)
+.+..+|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+ -..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999999998852 1122 2347888999999999999999999887642 2222 2568
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 040261 306 YGILINGYCKNKE-IEGALSLYSEMLS 331 (343)
Q Consensus 306 ~~~l~~~~~~~~~-~~~a~~~~~~~~~ 331 (343)
+..+..+|.+.|+ +++|.+.+++.+.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8889999999995 6999999988764
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.04 E-value=3.9e-08 Score=73.58 Aligned_cols=128 Identities=13% Similarity=0.020 Sum_probs=110.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040261 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244 (343)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (343)
.+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...++...+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566778889999999999998874 4678899999999999999999999999998874 456788889999999
Q ss_pred hCCChhHHHHHHHHHHHcCCCC----------------CHHHHHHHHHHHhcCCchHHHHHHHHHHHhCC
Q 040261 245 KNGKMDEASRLLELMIQIGVRP----------------DASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298 (343)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (343)
..|++++|...++++.+.. +. ....+..+..++...|++++|...+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998853 22 23778889999999999999999999998864
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.03 E-value=3.7e-08 Score=73.70 Aligned_cols=133 Identities=11% Similarity=-0.127 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040261 56 NILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135 (343)
Q Consensus 56 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (343)
..+...+...|++++|...+++.. .|+...+..+...+...|++++|++.+++..+.... +...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHc
Confidence 334444555555555555555442 334555555666666666666666666666554322 455566666666666
Q ss_pred CChHHHHHHHHHHHccCCCCC---------ccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040261 136 GHTIVALNLFEEMANGNGEFG---------VVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193 (343)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (343)
|++++|...+++..+..+... ...+.....+..+..++.+.|++++|...|++..+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 666666666666665431100 0011123678888899999999999999999988764
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.03 E-value=3e-08 Score=70.86 Aligned_cols=128 Identities=12% Similarity=0.040 Sum_probs=80.1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (343)
.+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555556666666777776666666653 3345666666667777777777777777776654 445666667777777
Q ss_pred cCCchHHHHHHHHHHHhCCCCccHHHHHH--HHHHHHhcCChHHHHHHHHHHH
Q 040261 280 LTGRVNRAKELFVSMESNGCMRDVFSYGI--LINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
..|++++|...+++..+.. +.+...+.. .+..+...|++++|++.+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777766542 223334422 3333666677777777776554
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.02 E-value=3.2e-09 Score=83.28 Aligned_cols=196 Identities=11% Similarity=-0.008 Sum_probs=122.2
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHH
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (343)
|.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+... .+...+..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 3567788888889999999999999999888754 34677888888888899999999999988887642 357778888
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHH
Q 040261 94 IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGL 173 (343)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (343)
..++...|++++|...|++..+.+.. +...+...+....+ ...+..... ..... .+.+......+...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~------~~~~~~i~~~l~~l- 146 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKRWNS-IEERR------IHQESELHSYLTRL- 146 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHHHHH-HHHTC------CCCCCHHHHHHHHH-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHHHHH-HHHHH------HhhhHHHHHHHHHH-
Confidence 88888889999999888887765211 10011111111111 111111111 22222 23344443333332
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCC-hhhHHHHHHHHhcc-CcHHHHHHHHHHHHH
Q 040261 174 CKEGFVDKAKELFLKMKDENINPD-VVTYTSLIRGFCYA-NDWNEAKCLFIEMMD 226 (343)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 226 (343)
..|+.++|++.++...+.. |+ ......+...+.+. +.++++..+|..+.+
T Consensus 147 -~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2577888888887776643 33 33333333333333 557777888776654
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.01 E-value=2.2e-08 Score=71.56 Aligned_cols=131 Identities=8% Similarity=-0.033 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (343)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4568888999999999999999999988755 4567889999999999999999999999999875 3367888899999
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHc
Q 040261 97 LCAESRIMEAAALFTKLRAFGCKPDVFTY--TTLINGLCRTGHTIVALNLFEEMAN 150 (343)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (343)
+...|++++|.+.+++..+.... +...+ ......+...|++++|...+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999887543 44455 3344447788999999999887654
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=2.1e-08 Score=79.73 Aligned_cols=131 Identities=9% Similarity=-0.009 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCC---CC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC---Cc--cHH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGL---FP--DLYTYNILINCFCKMGRVSPGFVVLGRILRSCF---TP--DAV 88 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 88 (343)
.|......|...|++++|...|.+..+... .+ -..+|+.+..+|...|++++|...+++..+... .+ ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444445555555555555555555433110 00 122445555555555555555555555443210 11 123
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFGCKP-----DVFTYTTLINGLCRTGHTIVALNLFEEMAN 150 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (343)
++..+...|.. |++++|++.|++..+..... ...++..+...|.+.|++++|...+++...
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444544 55555555555444321000 022344444445555555555555544443
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.01 E-value=3e-08 Score=66.95 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=95.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (343)
...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 6788899999999999999999999988754 4567788889999999999999999999998864 3367788889999
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 040261 97 LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCR 134 (343)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (343)
+...|++++|...++++.+.... +...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence 99999999999999999887533 55555555555544
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.00 E-value=3.6e-09 Score=74.20 Aligned_cols=99 Identities=7% Similarity=-0.092 Sum_probs=51.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
+...+..+...+.+.|++++|...|++..... |.+...|..+..++...|++++|...|++..+..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 44445555555555555555555555555433 234445555555555555555555555555554322 3444555555
Q ss_pred HHhhcCcHHHHHHHHHHHHhc
Q 040261 96 GLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~ 116 (343)
++...|++++|.+.|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555544
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.99 E-value=1.6e-08 Score=69.34 Aligned_cols=120 Identities=9% Similarity=-0.013 Sum_probs=99.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHH
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSL 93 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (343)
|.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4567889999999999999999999999988754 4477889999999999999999999999998875 3367888889
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 040261 94 IKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136 (343)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (343)
..++.+.|++++|.+.+++..+.... +...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 99999999999999999998876432 3455666666665544
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.98 E-value=2.2e-07 Score=73.31 Aligned_cols=170 Identities=9% Similarity=0.015 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCC---CCC--h
Q 040261 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENI---NPD--V 198 (343)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 198 (343)
.+...+..+...|++++|.+.+++..+....... .......+..+...+...|++++|+..+++...... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444555666666666666666665554310000 000001122334445555666666666665543211 111 2
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC----C-C
Q 040261 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQ-GVQPN-----VVTFNVIMNELCKNGKMDEASRLLELMIQIGVR----P-D 267 (343)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~ 267 (343)
.+++.+...|...|++++|...+++..+. ...|+ ..++..+..+|...|++++|...+++..+.... . -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34555555555566666666666555421 00111 134555555555556666666555555543100 0 0
Q ss_pred HHHHHHHHHHHhcCCchHHH-HHHHHHH
Q 040261 268 ASVYNTLMDGFCLTGRVNRA-KELFVSM 294 (343)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 294 (343)
..++..+...|...|++++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34455555555555555555 4444433
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.98 E-value=1.5e-08 Score=69.13 Aligned_cols=121 Identities=8% Similarity=0.055 Sum_probs=102.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.+...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 456788889999999999999999999988754 4567888999999999999999999999999874 33577888899
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (343)
..+...|++++|.+.+++..+.... +...+..+..++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 9999999999999999999887543 667777888888777764
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.97 E-value=3e-07 Score=72.57 Aligned_cols=168 Identities=11% Similarity=0.018 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCC
Q 040261 88 VTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV-----FTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD 162 (343)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (343)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++....... ..+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~ 150 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-----GID 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC-----SSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-----CCc
Confidence 34445566677777777777777776654322111 12334455566677777777777777776421 111
Q ss_pred ----cchHHHHHHHHHhcCChHHHHHHHHHhhh---C-CCCC--ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCC--
Q 040261 163 ----AITYSTITDGLCKEGFVDKAKELFLKMKD---E-NINP--DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQ-- 230 (343)
Q Consensus 163 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 230 (343)
..+++.+...|...|++++|...+++..+ . +..+ ...++..+..+|...|++++|...+++..+....
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 23566777777777777777777777652 1 1111 1146667777777777777777777777654200
Q ss_pred --C-CHHHHHHHHHHHHhCCChhHH-HHHHHHHH
Q 040261 231 --P-NVVTFNVIMNELCKNGKMDEA-SRLLELMI 260 (343)
Q Consensus 231 --~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 260 (343)
. -..+|..+..++.+.|++++| ...+++..
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 0 145666677777777777777 55565553
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=6.9e-09 Score=81.34 Aligned_cols=194 Identities=10% Similarity=-0.039 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040261 51 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130 (343)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (343)
+...+..+...+...|++++|...|++.++... .+...|..+..++.+.|++++|++.+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 456777788888888999999999988887642 36778888888888889999999999888877433 6677888888
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 040261 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCY 210 (343)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (343)
++...|++++|...+++.....+ .+...+...+....+. ..+... ........+.+......+.. + .
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p-------~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~-l-~ 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAK-------EQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTR-L-I 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-------HTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHH-H-H
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHH-H-H
Confidence 88889999999988888776541 1111111122211111 111111 11222223334433333322 2 2
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhC-CChhHHHHHHHHHHH
Q 040261 211 ANDWNEAKCLFIEMMDQGVQPNV-VTFNVIMNELCKN-GKMDEASRLLELMIQ 261 (343)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 261 (343)
.|++++|.+.++...+. .|+. .....+...+.+. +.+++|..+|..+.+
T Consensus 148 ~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57888888887776654 4443 3333333334333 567778888877654
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=2.9e-08 Score=67.41 Aligned_cols=102 Identities=12% Similarity=0.034 Sum_probs=90.3
Q ss_pred CCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHH
Q 040261 49 FPD-LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTT 127 (343)
Q Consensus 49 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (343)
.|+ ...+......+.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..+++..+.+.. +...|..
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~ 86 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIR 86 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHH
Confidence 343 3578888999999999999999999999875 337889999999999999999999999999988544 6888999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccC
Q 040261 128 LINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
+..++...|++++|.+.|++..+..
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999865
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.96 E-value=1.4e-08 Score=78.05 Aligned_cols=203 Identities=9% Similarity=-0.071 Sum_probs=141.0
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHccCCCC-C-----------ccc
Q 040261 99 AESRIMEAAALFTKLRAFGCKPDVFTYTTL-------INGLCRTGHTIVALNLFEEMANGNGEF-G-----------VVC 159 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-----------~~~ 159 (343)
..++...|.+.|.+.....+. ....|..+ ...+.+.++..+++..+.......... . ...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 578889999999998887544 56677776 455555555666666555554422100 0 000
Q ss_pred c--CCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--HHH
Q 040261 160 K--PDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPN--VVT 235 (343)
Q Consensus 160 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 235 (343)
+ ........+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0 011234556778889999999999999887754 443355666668889999999999998554431 121 236
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHH
Q 040261 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPD--ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYG 307 (343)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (343)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|+...+.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH
Confidence 77788999999999999999999985443243 346667777889999999999999999986 35543333
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.94 E-value=2.5e-08 Score=69.90 Aligned_cols=98 Identities=18% Similarity=0.025 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchH
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (343)
...+..+...+.+.|++++|++.|++.....+. +...|..+..+|...|++++|...|++..... |.++..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------P~~~~~~ 107 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------KNDYTPV 107 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SSCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------CCCcHHH
Confidence 445566666667777777777777777766433 56666777777777777777777777777654 3455666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhC
Q 040261 167 STITDGLCKEGFVDKAKELFLKMKDE 192 (343)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (343)
..+..+|.+.|++++|...|++..+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777776664
No 136
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.93 E-value=7.2e-06 Score=64.92 Aligned_cols=177 Identities=11% Similarity=-0.006 Sum_probs=123.4
Q ss_pred hhhHHHHHHHH---HhcCChh-HHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCC----------cchHHHHHHHHHHcC
Q 040261 17 VCSFNILFGCL---AKNKHYD-TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR----------VSPGFVVLGRILRSC 82 (343)
Q Consensus 17 ~~~~~~l~~~~---~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~ 82 (343)
...|..+...+ .+.|.+. +|+.+++.+...+ |-+..+|+.--.++...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 34455554444 3456655 8999999999865 3345566665544444443 678899999998876
Q ss_pred CCccHHHHHHHHHHHhhcC--cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHccCCCCCccc
Q 040261 83 FTPDAVTFTSLIKGLCAES--RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH-TIVALNLFEEMANGNGEFGVVC 159 (343)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 159 (343)
++ +..+|+.-.-.+.+.+ .+++++.+++++.+..+. +..+|+.-.-++...|. ++++++.++.+.+.+
T Consensus 105 PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~------- 175 (331)
T 3dss_A 105 PK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------- 175 (331)
T ss_dssp TT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------
T ss_pred CC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-------
Confidence 44 7888888777777777 489999999999998755 88888888888888888 589999999999876
Q ss_pred cCCcchHHHHHHHHHhc--------------CChHHHHHHHHHhhhCCCCCChhhHHHH
Q 040261 160 KPDAITYSTITDGLCKE--------------GFVDKAKELFLKMKDENINPDVVTYTSL 204 (343)
Q Consensus 160 ~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 204 (343)
+.|..+|+.....+.+. +.++++++.+....... |-|...|+.+
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 56777787776665554 23555666665555433 2244444433
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.93 E-value=4.5e-08 Score=66.73 Aligned_cols=118 Identities=13% Similarity=0.015 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040261 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDG 277 (343)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (343)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3444555555555666666666666655542 2345555556666666666666666666666553 3345566666666
Q ss_pred HhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC
Q 040261 278 FCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKE 318 (343)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (343)
+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666665542 2244555555555555554
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.93 E-value=1e-07 Score=64.26 Aligned_cols=96 Identities=17% Similarity=0.272 Sum_probs=48.5
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (343)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444555555555555555554432 2234444455555555555555555555555443 334445555555555
Q ss_pred cCCchHHHHHHHHHHHhC
Q 040261 280 LTGRVNRAKELFVSMESN 297 (343)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~ 297 (343)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.93 E-value=1.6e-08 Score=73.28 Aligned_cols=123 Identities=12% Similarity=0.129 Sum_probs=99.6
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHH-HhhcCcH--
Q 040261 27 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG-LCAESRI-- 103 (343)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 103 (343)
+...|++++|...++...+.. +.+...+..+..++...|++++|...|++..+... .+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 346788999999999887755 45778899999999999999999999999988653 367777788888 7788998
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
++|...+++..+.... +...+..+..++...|++++|...++++....
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999887543 57788889999999999999999999998865
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.92 E-value=7.1e-08 Score=66.02 Aligned_cols=120 Identities=8% Similarity=-0.070 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 040261 49 FPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTL 128 (343)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (343)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 3456688889999999999999999999998864 336788899999999999999999999999987543 67888999
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcC
Q 040261 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177 (343)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (343)
..++...|++++|.+.+++..... +.+...+..+..++.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-------SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhc
Confidence 999999999999999999998864 344566666666666554
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=2.2e-08 Score=70.22 Aligned_cols=110 Identities=11% Similarity=0.011 Sum_probs=88.5
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 040261 4 FDYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCF 83 (343)
Q Consensus 4 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (343)
|+.+....| .+...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|++.....+
T Consensus 10 ~~~al~~~p--~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNEISS--DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTTCCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCH--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 444444333 467788888899999999999999999988765 45777888888899999999999999999888753
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 040261 84 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117 (343)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (343)
.+...+..+..++...|++++|.+.|++..+..
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 367778888889999999999999999887753
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.92 E-value=2.7e-08 Score=73.81 Aligned_cols=157 Identities=11% Similarity=-0.001 Sum_probs=112.2
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCC
Q 040261 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQ----GVQP-NVVTFNVIMNELCKNGK 248 (343)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~ 248 (343)
...|++++|.+.++.+... .......+..+...+...|++++|...+++..+. +..+ ....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578999999955555432 2235677888888999999999999999888762 2122 24567778888999999
Q ss_pred hhHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHhcCCchHHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHHhcC
Q 040261 249 MDEASRLLELMIQI----GVRP--DASVYNTLMDGFCLTGRVNRAKELFVSMESN----GCMR-DVFSYGILINGYCKNK 317 (343)
Q Consensus 249 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~ 317 (343)
+++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+. +... ...++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999887764 2111 2456777888899999999999999877642 1111 1234577788899999
Q ss_pred ChHHHHHHHHHHHh
Q 040261 318 EIEGALSLYSEMLS 331 (343)
Q Consensus 318 ~~~~a~~~~~~~~~ 331 (343)
++++|.+.+++...
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888764
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=4.5e-08 Score=70.95 Aligned_cols=122 Identities=9% Similarity=0.076 Sum_probs=95.1
Q ss_pred HhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCh--H
Q 040261 63 CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING-LCRTGHT--I 139 (343)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 139 (343)
...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+.... +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 45688889999998888764 336778888889999999999999999998876533 66777777877 7788888 9
Q ss_pred HHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 040261 140 VALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDEN 193 (343)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (343)
+|...++++.... +.+...+..+..++...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999988865 3456778888888999999999999999887764
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.90 E-value=2.2e-08 Score=80.62 Aligned_cols=132 Identities=16% Similarity=0.058 Sum_probs=111.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD--------------LYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
....+..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567889999999999999999999999987542211 478999999999999999999999999987
Q ss_pred CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 040261 82 CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA-LNLFEEMA 149 (343)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 149 (343)
.. .+...+..+..++...|++++|+..|++..+..+. +...+..+..++.+.|+.+++ ...++.+.
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 37888999999999999999999999999988544 677888899999999999888 44555553
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.90 E-value=4.4e-08 Score=66.56 Aligned_cols=101 Identities=6% Similarity=-0.046 Sum_probs=88.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++.++... .+...|..+.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 79 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 356678889999999999999999999988765 45778899999999999999999999999998753 3677888899
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcC
Q 040261 95 KGLCAESRIMEAAALFTKLRAFG 117 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~ 117 (343)
.++...|++++|.+.|++..+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999988763
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2e-07 Score=71.63 Aligned_cols=187 Identities=7% Similarity=-0.070 Sum_probs=107.9
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHH-------HHHHHhcCCcchHHHHHHHHHHcCCCcc---------------
Q 040261 29 KNKHYDTVLSLFKRLNSIGLFPDLYTYNIL-------INCFCKMGRVSPGFVVLGRILRSCFTPD--------------- 86 (343)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 86 (343)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+...... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5778888888888887754 3345667666 44555555555555555444331 111
Q ss_pred -------HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccc
Q 040261 87 -------AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 159 (343)
Q Consensus 87 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (343)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~------- 165 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP------- 165 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-------
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-------
Confidence 1223345556666777777777777666543 332244455556677777777777776443321
Q ss_pred cC--CcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC--hhhHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 040261 160 KP--DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD--VVTYTSLIRGFCYANDWNEAKCLFIEMMDQ 227 (343)
Q Consensus 160 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (343)
.| ....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11 123555666667777777777777776654322132 234445555666677777777777777665
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.89 E-value=7.4e-08 Score=77.56 Aligned_cols=87 Identities=6% Similarity=-0.113 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (343)
..|..+..++.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 444445555555555555555555555543 3344455555555555555555555555554432 22344444455555
Q ss_pred HhcCChHHH
Q 040261 314 CKNKEIEGA 322 (343)
Q Consensus 314 ~~~~~~~~a 322 (343)
...|++++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=3e-08 Score=73.55 Aligned_cols=161 Identities=11% Similarity=-0.046 Sum_probs=88.8
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC
Q 040261 99 AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (343)
..|++++|.+.++.+... .......+..+...+...|++++|...+++........+. .+....++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcCC
Confidence 456777777744444332 2224556666777777777777777777766552110000 12234556666777777777
Q ss_pred hHHHHHHHHHhhhC----CCCC--ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhCC
Q 040261 179 VDKAKELFLKMKDE----NINP--DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQG---VQPN--VVTFNVIMNELCKNG 247 (343)
Q Consensus 179 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~ 247 (343)
+++|...+++.... +..+ ....+..+...+...|++++|...+++..+.. -.+. ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777665432 1011 13345556666667777777777776655321 0111 223455566666677
Q ss_pred ChhHHHHHHHHHHH
Q 040261 248 KMDEASRLLELMIQ 261 (343)
Q Consensus 248 ~~~~a~~~~~~~~~ 261 (343)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777666666544
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=1.5e-08 Score=71.01 Aligned_cols=111 Identities=9% Similarity=0.002 Sum_probs=87.2
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 040261 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIG 263 (343)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 263 (343)
..++++.... +.+...+..+...+...|++++|...|+.+.+.. +.+...|..+..++...|++++|...|+++.+..
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555432 2245667777888888999999999999888874 4467788888888999999999999999988875
Q ss_pred CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 264 VRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
+.+...+..+..+|...|++++|...|++..+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456778888888999999999999999888764
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.86 E-value=5e-09 Score=77.62 Aligned_cols=153 Identities=11% Similarity=-0.061 Sum_probs=73.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCcc---------------
Q 040261 22 ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD--------------- 86 (343)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 86 (343)
..+......|+++++.+.|+.-.... ......+..+...+...|++++|...|++..+......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 33444445556666666554322211 11334566666677777777777777777776422111
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchH
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (343)
...+..+..++...|++++|+..+++..+.... +...+..+..++...|++++|...|++..... +.+..++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 159 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIR 159 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHH
Confidence 145555555555666666666666665554322 44555555556666666666666666655543 2233444
Q ss_pred HHHHHHHHhcCChHHHH
Q 040261 167 STITDGLCKEGFVDKAK 183 (343)
Q Consensus 167 ~~l~~~~~~~~~~~~a~ 183 (343)
..+..++...++..++.
T Consensus 160 ~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 160 NSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.85 E-value=7.5e-08 Score=63.59 Aligned_cols=103 Identities=7% Similarity=0.015 Sum_probs=81.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCc--cHHHHH
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP--DAVTFT 91 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 91 (343)
|.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 3567788888888889999999999998887754 4466778888888888888888888888888763 23 467777
Q ss_pred HHHHHHhhc-CcHHHHHHHHHHHHhcCC
Q 040261 92 SLIKGLCAE-SRIMEAAALFTKLRAFGC 118 (343)
Q Consensus 92 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 118 (343)
.+..++... |++++|.+.+++......
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 888888888 888888888888887643
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.82 E-value=2.1e-05 Score=62.26 Aligned_cols=224 Identities=8% Similarity=-0.040 Sum_probs=155.1
Q ss_pred HHHhcCCcc-hHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCc----------HHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040261 61 CFCKMGRVS-PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR----------IMEAAALFTKLRAFGCKPDVFTYTTLI 129 (343)
Q Consensus 61 ~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (343)
...+.|.+. +|+++++.++..++. +..+|+.--..+...+. +++++.+++.+....++ +..+|+.-.
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~ 115 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRC 115 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 344567766 789999999987533 55667665444444333 67889999999887655 788888877
Q ss_pred HHHHhcCC--hHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 040261 130 NGLCRTGH--TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF-VDKAKELFLKMKDENINPDVVTYTSLIR 206 (343)
Q Consensus 130 ~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (343)
.++.+.++ +++++.+++++.+.+ +.+..+|+.-..++...|. ++++++.++.+.+.++ -|...|+....
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d-------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ 187 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSC 187 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 77777774 789999999999876 5677888888778888888 5899999999888753 46777776655
Q ss_pred HHhcc--------------CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----------CChhHHHHHHHHHHH
Q 040261 207 GFCYA--------------NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN-----------GKMDEASRLLELMIQ 261 (343)
Q Consensus 207 ~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~ 261 (343)
.+.+. +.++++++.+....... +-|...|+.+-..+.+. +.++++++.++++.+
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 55443 45788888888888764 45677776555555544 346677788888877
Q ss_pred cCCCCCH-HHHHHHH---HHHhcCCchHHHHHHHHHHHhC
Q 040261 262 IGVRPDA-SVYNTLM---DGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 262 ~~~~~~~-~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
.. |+. -.+..++ ......+..+++...+.++.+.
T Consensus 267 ~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 267 LE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 63 332 2222211 1222456667777777777764
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.82 E-value=1.3e-07 Score=64.30 Aligned_cols=107 Identities=9% Similarity=0.034 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC--cc----HHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT--PD----AVTF 90 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 90 (343)
..++..++..+.+.|++++|++.|++.++.. |.+...|..+..++.+.|++++|++.+++.++.... ++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4568889999999999999999999988865 456778999999999999999999999998864311 11 2367
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 040261 91 TSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYT 126 (343)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (343)
..+..++...|++++|++.|++.... .|++....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 77788888899999999999998875 45555443
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.82 E-value=3.6e-08 Score=68.61 Aligned_cols=100 Identities=12% Similarity=-0.014 Sum_probs=80.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.+...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|++.....+ .+...+..+.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 93 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHH
Confidence 356677778888888899999999998887755 45677888888888888999999999988888753 3567777788
Q ss_pred HHHhhcCcHHHHHHHHHHHHhc
Q 040261 95 KGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
.++...|++++|.+.|++..+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888889999999888888765
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.81 E-value=3.1e-07 Score=61.14 Aligned_cols=111 Identities=10% Similarity=-0.027 Sum_probs=89.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
.+..+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 45678888999999999999999999988754 44677888888999999999999999999988743 36778888889
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (343)
++...|++++|.+.+++..+.+.. +...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 999999999999999998877433 444444433
No 156
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=1.5e-05 Score=67.46 Aligned_cols=125 Identities=10% Similarity=0.104 Sum_probs=89.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccC-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040261 164 ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN-DWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242 (343)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (343)
..|...+....+.++.+.|..+|++. ... ..+...|......-...+ +.+.|..+|+...+.. +-+...+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666666666788899999999999 321 224444443332222233 6999999999998863 2234455667777
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 040261 243 LCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
....|+.+.|..+|+++. .....|...+..=...|+.+.+..++++..+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999999972 3577888888777788999999998887763
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=6.9e-08 Score=67.15 Aligned_cols=100 Identities=11% Similarity=-0.127 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040261 51 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130 (343)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (343)
+...+..+...+.+.|++++|...|+++....+ .+...|..+..++.+.|++++|+..|++.....+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 445677788889999999999999999998753 37888889999999999999999999999988644 6677888999
Q ss_pred HHHhcCChHHHHHHHHHHHccC
Q 040261 131 GLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
++...|++++|...|++.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.78 E-value=2e-07 Score=61.48 Aligned_cols=97 Identities=9% Similarity=-0.043 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCc--cHHHHHHHHH
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR--DVFSYGILIN 311 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 311 (343)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344445555555555555555555555543 3344555555555666666666666666555542 22 3455555556
Q ss_pred HHHhc-CChHHHHHHHHHHHhC
Q 040261 312 GYCKN-KEIEGALSLYSEMLSK 332 (343)
Q Consensus 312 ~~~~~-~~~~~a~~~~~~~~~~ 332 (343)
.+... |++++|.+.+++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 66666 6666666666666544
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=6.3e-07 Score=62.49 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=92.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHH
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD----LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (343)
|.+...+..+...+.+.|++++|...|++..+.. |+ ...+..+..++...|++++|...+++..+... .+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHH
Confidence 3567889999999999999999999999998754 55 67888888999999999999999999988743 36778
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLIN 130 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (343)
+..+..++...|++++|.+.|++..+.... +...+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHH
Confidence 888999999999999999999999887432 4444444433
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.76 E-value=8.9e-08 Score=65.24 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=91.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC--cc----HHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT--PD----AVT 89 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 89 (343)
....+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++....... ++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 45678889999999999999999999988765 456778888999999999999999999998875321 11 667
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040261 90 FTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING 131 (343)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (343)
+..+..++...|++++|.+.+++..+.. |+......+..+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 8888899999999999999999998864 455555544443
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.76 E-value=4.8e-07 Score=61.29 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=55.8
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFC 279 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (343)
.+......+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...+++.++.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34445555556666666666666665542 3345555566666666666666666666666554 334555666666666
Q ss_pred cCCchHHHHHHHHHHHh
Q 040261 280 LTGRVNRAKELFVSMES 296 (343)
Q Consensus 280 ~~~~~~~a~~~~~~~~~ 296 (343)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666665554
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.76 E-value=7.7e-07 Score=59.17 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=54.0
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040261 199 VTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGF 278 (343)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (343)
..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 334445555555566666666665555542 2244555555555556666666666666655543 33455555555666
Q ss_pred hcCCchHHHHHHHHHHHhC
Q 040261 279 CLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~ 297 (343)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666665554
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.75 E-value=3.2e-07 Score=63.19 Aligned_cols=100 Identities=14% Similarity=0.026 Sum_probs=69.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.+...+..+...+.+.|++++|...|+...... +.+...+..+..++...|++++|...+++..+... .+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 566777777777777777777777777776654 34566677777777777777777777777776542 2556666677
Q ss_pred HHHhhcCcHHHHHHHHHHHHhc
Q 040261 95 KGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777766654
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.73 E-value=5.9e-07 Score=61.81 Aligned_cols=100 Identities=9% Similarity=-0.050 Sum_probs=80.0
Q ss_pred CChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040261 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLM 275 (343)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 275 (343)
.+...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 356777888888888888888888888888764 4456778888888888888888888888888875 45677888888
Q ss_pred HHHhcCCchHHHHHHHHHHHhC
Q 040261 276 DGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888887764
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=2.7e-07 Score=65.86 Aligned_cols=101 Identities=10% Similarity=-0.031 Sum_probs=87.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLI 94 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (343)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++.++... .+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 456788899999999999999999999988765 44778899999999999999999999999998753 3678888899
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcC
Q 040261 95 KGLCAESRIMEAAALFTKLRAFG 117 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~ 117 (343)
.++...|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999988764
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.72 E-value=4.2e-07 Score=67.13 Aligned_cols=98 Identities=16% Similarity=0.031 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (343)
..+..+..++...|++++|...++++.+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 566667777778888888888888877764 4566777777778888888888888888777653 23556666677777
Q ss_pred HhcCChHHHH-HHHHHHHhCC
Q 040261 314 CKNKEIEGAL-SLYSEMLSKG 333 (343)
Q Consensus 314 ~~~~~~~~a~-~~~~~~~~~~ 333 (343)
...++.+++. ..+..|...+
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 7777766666 5555555443
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.71 E-value=2.2e-07 Score=63.15 Aligned_cols=113 Identities=13% Similarity=0.040 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchH
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITY 166 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (343)
...+..+...+.+.|++++|++.|++..+..+. +...|..+..+|...|++++|++.+++..+..+........-..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 445677888888999999999999998887544 6778888999999999999999999988775311000000002356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHH
Q 040261 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYT 202 (343)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (343)
..+..++...|++++|++.|++.... .|+.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 66777788888888888888887664 34554433
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=3.5e-06 Score=70.39 Aligned_cols=203 Identities=8% Similarity=-0.003 Sum_probs=141.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCccccC----------CcchHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCC
Q 040261 129 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKP----------DAITYSTITDGLCKEGFVDKAKELFLKMKDEN-INPD 197 (343)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 197 (343)
...+...|++++|.+.+..+.+..+........ ...++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 455677888888888888887765321100000 01236778999999999999999998875421 1111
Q ss_pred h----hhHHHHHHHHhccCcHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHc--CC--
Q 040261 198 V----VTYTSLIRGFCYANDWNEAKCLFIEMMDQ----GVQPN-VVTFNVIMNELCKNGKMDEASRLLELMIQI--GV-- 264 (343)
Q Consensus 198 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-- 264 (343)
. ...+.+-..+...|+++.+..+++..... +..+. ..++..+...+...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 23344445566778999999998887643 32333 457788999999999999999999988653 11
Q ss_pred -CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC----CCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 265 -RPDASVYNTLMDGFCLTGRVNRAKELFVSMESN----GCMRD--VFSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 265 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
+....++..++..|...|++++|...+++.... +.++. ...+..+...+...|++++|...|.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 122467888999999999999999999877542 21111 24566667778889999999988877754
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.69 E-value=4.2e-07 Score=64.87 Aligned_cols=101 Identities=11% Similarity=-0.028 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040261 50 PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129 (343)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (343)
.+...+..+...+.+.|++++|...|++.++... .+...|..+..++.+.|++++|+..+++..+.... +...+..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 3556788889999999999999999999998753 37888999999999999999999999999988544 688899999
Q ss_pred HHHHhcCChHHHHHHHHHHHccC
Q 040261 130 NGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
.++...|++++|...|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999998864
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.69 E-value=4.4e-07 Score=61.04 Aligned_cols=93 Identities=13% Similarity=-0.013 Sum_probs=58.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc
Q 040261 237 NVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKN 316 (343)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (343)
..+...+.+.|++++|...++++++.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344555666666666766666666654 4456666666666666677777777776666543 22455666666666667
Q ss_pred CChHHHHHHHHHHHh
Q 040261 317 KEIEGALSLYSEMLS 331 (343)
Q Consensus 317 ~~~~~a~~~~~~~~~ 331 (343)
|++++|+..+++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766664
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.67 E-value=4.7e-07 Score=61.53 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=59.2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CCC----HHHHHH
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGV--RPD----ASVYNT 273 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 273 (343)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++++.+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555666666666666655542 33445555556666666666666666666555421 111 455566
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHH
Q 040261 274 LMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310 (343)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 310 (343)
+...+...|++++|...+++..+. .|+......+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 666666666666666666666654 24444443333
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=3.5e-07 Score=61.54 Aligned_cols=96 Identities=9% Similarity=-0.125 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLC 98 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (343)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++.++..+. +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 45667778888888888888888887754 446777888888888888888888888888876533 5667777888888
Q ss_pred hcCcHHHHHHHHHHHHhc
Q 040261 99 AESRIMEAAALFTKLRAF 116 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~ 116 (343)
..|++++|+..+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888887765
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.8e-06 Score=72.16 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=13.7
Q ss_pred HHHHhcCCcchHHHHHHHHHHc
Q 040261 60 NCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
+.+.+.|++++|.+.|..+.+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~ 33 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDK 33 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3455666666666666666654
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.9e-06 Score=59.93 Aligned_cols=100 Identities=13% Similarity=-0.050 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCcc----HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHH
Q 040261 50 PDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD----AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTY 125 (343)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (343)
.+...+..+...+...|++++|.+.|++..+.. |+ ...+..+..++...|++++|++.+++..+.... +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 466788889999999999999999999998864 44 678888899999999999999999999887433 67788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 126 TTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 126 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
..+..++...|++++|...+++.....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 899999999999999999999998864
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.62 E-value=9.5e-08 Score=80.71 Aligned_cols=126 Identities=8% Similarity=-0.043 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGL 97 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (343)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|.+.+++..+... .+...+..+..++
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~ 84 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 84 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 345556667788999999999999998864 44688999999999999999999999999998753 3678899999999
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 040261 98 CAESRIMEAAALFTKLRAFGCKPDVFTYTTLING--LCRTGHTIVALNLFE 146 (343)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 146 (343)
...|++++|++.+++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999887433 34455555555 888899999999988
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.57 E-value=3.6e-06 Score=57.05 Aligned_cols=97 Identities=13% Similarity=0.010 Sum_probs=79.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCcc---HHHHHH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDL---YTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD---AVTFTS 92 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 92 (343)
.+..+...+.+.|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++++.+..+. + ...+..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 45667788889999999999999988754 2233 47778888999999999999999999886433 3 566778
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcC
Q 040261 93 LIKGLCAESRIMEAAALFTKLRAFG 117 (343)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (343)
+..++...|++++|...|+++.+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8889999999999999999998874
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.54 E-value=1e-06 Score=62.30 Aligned_cols=132 Identities=12% Similarity=0.100 Sum_probs=76.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHcC----CCC-CHHH
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQ-PN----VVTFNVIMNELCKNGKMDEASRLLELMIQIG----VRP-DASV 270 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~ 270 (343)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.. .++ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444555555555555555554432100 01 1345556666667777777777776655431 001 1345
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhC----CCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 271 YNTLMDGFCLTGRVNRAKELFVSMESN----GCM-RDVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666677777778888887777766532 111 12345667777888888888888888877643
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.53 E-value=9.3e-07 Score=74.32 Aligned_cols=130 Identities=9% Similarity=0.002 Sum_probs=103.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---------------HHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD---------------LYTYNILINCFCKMGRVSPGFVVLGRILR 80 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (343)
....|..+...+.+.|++++|+..|++..+.. +.+ ...|..+..++.+.|++++|+..+++.++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45678888999999999999999999988743 222 57888899999999999999999999998
Q ss_pred cCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHH
Q 040261 81 SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN-LFEEM 148 (343)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~ 148 (343)
... .+...|..+..++...|++++|...|++..+.... +...+..+..++.+.++.+++.+ .+..|
T Consensus 346 ~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 753 36788888999999999999999999999887433 55677888888888888776653 34443
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.53 E-value=6.3e-07 Score=75.71 Aligned_cols=119 Identities=12% Similarity=0.049 Sum_probs=69.9
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchH
Q 040261 206 RGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVN 285 (343)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (343)
..+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++.+.. +.+...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34455666677776666666652 3345666666666777777777777777766654 345566666666777777777
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHH--HHhcCChHHHHHHHH
Q 040261 286 RAKELFVSMESNGCMRDVFSYGILING--YCKNKEIEGALSLYS 327 (343)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 327 (343)
+|.+.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777666542 1233344444444 666677777777666
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.52 E-value=2.8e-06 Score=71.41 Aligned_cols=150 Identities=10% Similarity=-0.004 Sum_probs=109.0
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCcc--------------HHHHHHHHHHH
Q 040261 32 HYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPD--------------AVTFTSLIKGL 97 (343)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 97 (343)
++++|...|+...... +.....+..+...+.+.|+++.|...|++.++...... ...|..+..++
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554333211 12345677888889999999999999999887543221 57788888899
Q ss_pred hhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcC
Q 040261 98 CAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG 177 (343)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (343)
.+.|++++|+..+++..+.... +...+..+..+|...|++++|...|+++.+.. +.+..++..+..++.+.+
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHH
Confidence 9999999999999998887544 67788888999999999999999999998875 455678888888888888
Q ss_pred ChHHHHH-HHHHhh
Q 040261 178 FVDKAKE-LFLKMK 190 (343)
Q Consensus 178 ~~~~a~~-~~~~~~ 190 (343)
+.+++.+ .+..|.
T Consensus 400 ~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 400 EHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 8877664 344443
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.49 E-value=1.2e-06 Score=61.99 Aligned_cols=135 Identities=15% Similarity=0.006 Sum_probs=103.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CC----HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC---C-c-c
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLF-PD----LYTYNILINCFCKMGRVSPGFVVLGRILRSCF---T-P-D 86 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-~-~ 86 (343)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+... . + .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 457888999999999999999999987653211 11 13678888999999999999999999875321 1 1 1
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRAF----GCK-PDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (343)
...+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456777888899999999999999887653 111 12346777888999999999999999987754
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.49 E-value=2.5e-06 Score=60.63 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=76.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhC--------C---------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSI--------G---------LFPDLYTYNILINCFCKMGRVSPGFVVLGRI 78 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 78 (343)
....+......+.+.|++++|+..|++.... . -+.+...|..+..++.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567888999999999999999999998764 1 0122356777777888888888888888888
Q ss_pred HHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 040261 79 LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
++.. +.+...|..+..++...|++++|...|++..+.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7764 335677777888888888888888888887776
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.49 E-value=1.8e-06 Score=70.28 Aligned_cols=124 Identities=10% Similarity=-0.030 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC---------------CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSI---------------GLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSC 82 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (343)
..+..+...+.+.|++++|+..|++..+. --+.+...|..+..++.+.|++++|++.+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45788889999999999999999988761 112345678889999999999999999999999865
Q ss_pred CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 040261 83 FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALN 143 (343)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 143 (343)
. .+...+..+..++...|++++|++.|++..+.... +...+..+..++...++.+++.+
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 36788888999999999999999999999887433 56667777777777666665543
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=8.6e-06 Score=55.15 Aligned_cols=92 Identities=10% Similarity=0.062 Sum_probs=48.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 040261 204 LIRGFCYANDWNEAKCLFIEMMDQGVQPNV---VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD---ASVYNTLMDG 277 (343)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 277 (343)
+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...++++.+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 3444455555555555555555542 1112 344455555556666666666666655543 222 3445555555
Q ss_pred HhcCCchHHHHHHHHHHHhC
Q 040261 278 FCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~ 297 (343)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666665553
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.48 E-value=5.7e-07 Score=60.08 Aligned_cols=85 Identities=14% Similarity=0.021 Sum_probs=36.1
Q ss_pred cCChhHHHHHHHHhHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHH
Q 040261 30 NKHYDTVLSLFKRLNSIG--LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAA 107 (343)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 107 (343)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|...+++.++..+. +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555544432 0112234444444444445555555555544443321 3344444444444444444444
Q ss_pred HHHHHHHh
Q 040261 108 ALFTKLRA 115 (343)
Q Consensus 108 ~~~~~~~~ 115 (343)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.47 E-value=8.2e-07 Score=59.28 Aligned_cols=106 Identities=9% Similarity=-0.059 Sum_probs=77.2
Q ss_pred hcCCcchHHHHHHHHHHcC--CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 040261 64 KMGRVSPGFVVLGRILRSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141 (343)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 141 (343)
..|++++|+..|++.++.+ -+.+...+..+..++...|++++|++.+++..+..+. +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 4578888999998888763 1234667788888888899999999999998887544 577788888889999999999
Q ss_pred HHHHHHHHccCCCCCccccCCcchHHHHHHHHHh
Q 040261 142 LNLFEEMANGNGEFGVVCKPDAITYSTITDGLCK 175 (343)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (343)
...+++.....+ ..+....|...+..+..
T Consensus 81 ~~~~~~al~~~p-----~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 81 VELLLKIIAETS-----DDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHC-----CCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHhCC-----CcHHHHHHHHHHHHHHH
Confidence 998888776654 34556666666666554
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=3.9e-05 Score=66.15 Aligned_cols=172 Identities=9% Similarity=-0.071 Sum_probs=120.4
Q ss_pred chHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCc----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--
Q 040261 69 SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR----------IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG-- 136 (343)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 136 (343)
++|++.+++++..++. +..+|+.--.++...|+ ++++++.++++.+..++ +..+|..-..++.+.+
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 4567777777776433 45566665555555555 77888888888777655 6777777777777777
Q ss_pred ChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc-----
Q 040261 137 HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEG-FVDKAKELFLKMKDENINPDVVTYTSLIRGFCY----- 210 (343)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 210 (343)
+++++++.++++.+.+ +.+..+|+.-..++.+.| .++++++.++++.+.++ -+...|+.....+.+
T Consensus 124 ~~~~el~~~~k~l~~d-------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 124 NWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCC
T ss_pred cHHHHHHHHHHHHhhc-------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccc
Confidence 5588888888888775 456677777777777777 77888888877777643 356666665555444
Q ss_pred ---------cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhH
Q 040261 211 ---------ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251 (343)
Q Consensus 211 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 251 (343)
.+.++++.+.+....... +-+...|..+...+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 256889999999888874 4467788888777777766443
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.43 E-value=1.6e-06 Score=69.74 Aligned_cols=146 Identities=12% Similarity=0.020 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040261 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK 245 (343)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (343)
+..+...+.+.|++++|...|++..... |+.. .+...++..++...+. ...|..+..++.+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 4444555556666666666666655432 2221 1122333333322211 1367888899999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHH-HHhcCChHHHHH
Q 040261 246 NGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING-YCKNKEIEGALS 324 (343)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~ 324 (343)
.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+.+.+
T Consensus 243 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 5578899999999999999999999999987753 2234455555544 334567788888
Q ss_pred HHHHHHhC
Q 040261 325 LYSEMLSK 332 (343)
Q Consensus 325 ~~~~~~~~ 332 (343)
.|++|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 99988854
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.43 E-value=3.4e-05 Score=66.50 Aligned_cols=174 Identities=11% Similarity=-0.024 Sum_probs=139.1
Q ss_pred CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCC----------cchHHHHHHHHHHcCCCccHHHHHHHHHHHhhc
Q 040261 31 KHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR----------VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100 (343)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (343)
...++|++.++.+...+ +-+..+|+.--.++...|+ ++++++.++.+.+..++ +..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34568899999999865 3456678877777777777 89999999999988644 788898888888888
Q ss_pred C--cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhc-
Q 040261 101 S--RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG-HTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE- 176 (343)
Q Consensus 101 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 176 (343)
+ +++++++.++++.+.... +..+|+.....+.+.| .++++++.++++.+.+ +.+..+|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-------p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-------CCCHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-------CCCccHHHHHHHHHHhhc
Confidence 9 779999999999998765 8889988888888888 8999999999998875 56777888777776653
Q ss_pred -------------CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHH
Q 040261 177 -------------GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWN 215 (343)
Q Consensus 177 -------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (343)
+.++++++.+++..... +-+...|...-..+.+.++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 55789999998887754 346778888777777766633
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.41 E-value=4e-06 Score=68.27 Aligned_cols=124 Identities=10% Similarity=-0.089 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHc---------------CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 040261 53 YTYNILINCFCKMGRVSPGFVVLGRILRS---------------CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117 (343)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (343)
..+..+...+.+.|++++|...|++.++. .-+.+..+|..+..++.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 35777888899999999999999998861 112246788889999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHH
Q 040261 118 CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKE 184 (343)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 184 (343)
.. +...+..+..+|...|++++|...++++.+.. +.+...+..+..++...++.+++.+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67888999999999999999999999998865 3456667777777777776666543
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.40 E-value=2.3e-05 Score=53.86 Aligned_cols=111 Identities=10% Similarity=-0.079 Sum_probs=59.5
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChhHH
Q 040261 177 GFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCK----NGKMDEA 252 (343)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 252 (343)
+++++|+++|++..+.+. |+. . +...|...+..++|...+++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 345566666666655541 122 2 4455555555555666666655543 34445555555555 5566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCchHHHHHHHHHHHhCC
Q 040261 253 SRLLELMIQIGVRPDASVYNTLMDGFCL----TGRVNRAKELFVSMESNG 298 (343)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 298 (343)
..+|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666665544 34444555555555 555666666665555544
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.38 E-value=8.6e-06 Score=57.79 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 233 VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
...|..+..++.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3456666777777777777777777777764 445667777777777777777777777777664
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.38 E-value=6.6e-06 Score=57.19 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--------H-----HHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD--------L-----YTYNILINCFCKMGRVSPGFVVLGRILR 80 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (343)
..+......+.+.|++++|+..|++.++.. |+ . ..|..+..++.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345666677777778888888877776633 22 1 1444444444444555554444444444
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.37 E-value=1.9e-06 Score=69.39 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH------------------HHHHHHHHHHhcCCcchHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY------------------TYNILINCFCKMGRVSPGFVVLGR 77 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~ 77 (343)
....+..+...+.+.|++++|+..|++..... |+.. .|..+..++.+.|++++|...+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567788888999999999999999987643 4433 788888899999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHccC
Q 040261 78 ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLING-LCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~ 152 (343)
.++.. +.+...|..+..++...|++++|...|++..+.... +...+..+... ....+..+.+...|..+....
T Consensus 256 al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 256 VLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 98875 336788888999999999999999999998876322 34444444444 233456677777888776654
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.31 E-value=5.8e-05 Score=51.82 Aligned_cols=113 Identities=11% Similarity=0.009 Sum_probs=95.9
Q ss_pred cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCchHH
Q 040261 211 ANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCL----TGRVNR 286 (343)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 286 (343)
.+++++|...+++..+.| .|... +...|...+..++|..+|++..+.| +...+..|...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 357899999999999987 34433 7777777888999999999999976 56778888888887 789999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 040261 287 AKELFVSMESNGCMRDVFSYGILINGYCK----NKEIEGALSLYSEMLSKGI 334 (343)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 334 (343)
|...|++..+.| ++..+..|...|.. .+++++|.++|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999999875 67788888999988 8999999999999998874
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.29 E-value=2e-05 Score=54.83 Aligned_cols=93 Identities=11% Similarity=-0.053 Sum_probs=51.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHhcCCchHHHHHHHHHHHhC-----CCCc-
Q 040261 239 IMNELCKNGKMDEASRLLELMIQIGVRP------D-----ASVYNTLMDGFCLTGRVNRAKELFVSMESN-----GCMR- 301 (343)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~- 301 (343)
....+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++..+. .+.|
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 3344444555555555555554432110 1 225666666666666666666666666553 0023
Q ss_pred cHHHH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 302 DVFSY----GILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 302 ~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
+...| .....++...|++++|+..|++.++
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34455 6666777777777777777776654
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=7.9e-06 Score=68.76 Aligned_cols=126 Identities=10% Similarity=-0.004 Sum_probs=95.8
Q ss_pred HHhccCcHHHHHHHHHHHHHcC---C---CC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHc-----CC-CCC-HHHHH
Q 040261 207 GFCYANDWNEAKCLFIEMMDQG---V---QP-NVVTFNVIMNELCKNGKMDEASRLLELMIQI-----GV-RPD-ASVYN 272 (343)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~---~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~ 272 (343)
.+...|++++|..++++.++.. + .| ...+++.|..+|...|++++|..++++..+. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998887541 1 12 2467889999999999999999999988653 21 233 45788
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHh-----CCCC-c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 040261 273 TLMDGFCLTGRVNRAKELFVSMES-----NGCM-R-DVFSYGILINGYCKNKEIEGALSLYSEMLSK 332 (343)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 332 (343)
.|...|..+|++++|..++++..+ .|.. | ...+...+..++...+.+++|..+|+++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987754 2311 2 2345566777888999999999999998763
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=2.3e-06 Score=56.31 Aligned_cols=93 Identities=12% Similarity=-0.032 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCcc-------HH
Q 040261 232 NVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRD-------VF 304 (343)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~ 304 (343)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34556667777777888888888888777764 4466777777778888888888888888777653 33 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 040261 305 SYGILINGYCKNKEIEGALSLYS 327 (343)
Q Consensus 305 ~~~~l~~~~~~~~~~~~a~~~~~ 327 (343)
.+..+..++...|+++.|...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55556666666666666555443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.17 E-value=1.3e-05 Score=67.55 Aligned_cols=131 Identities=10% Similarity=-0.078 Sum_probs=82.9
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCccccC-CcchHHHHHHHHHhcCChHHHHHHHHHhhhC-----C--CCCChhhHH
Q 040261 131 GLCRTGHTIVALNLFEEMANGNGEFGVVCKP-DAITYSTITDGLCKEGFVDKAKELFLKMKDE-----N--INPDVVTYT 202 (343)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 202 (343)
.+...|++++|..++++..+.....-....| ...+++.+..+|...|++++|..++++..+. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998876543221111122 2457788888888899998888888775431 1 122245677
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 203 SLIRGFCYANDWNEAKCLFIEMMDQ-----GV-QPN-VVTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
.|...|...|++++|..++++..+. |. .|+ ..+.+.+..++...+.+++|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788888887777766532 21 122 23344455566666667777777766654
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.13 E-value=2.6e-05 Score=48.94 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=45.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+..+ .+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 34556666666666667777766666665543 23455566666666666666666666666665432 13444444444
Q ss_pred HH
Q 040261 96 GL 97 (343)
Q Consensus 96 ~~ 97 (343)
++
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.11 E-value=3.6e-05 Score=50.92 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 040261 216 EAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSME 295 (343)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (343)
++...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677788887763 4467788889999999999999999999999875 5567888899999999999999999999887
Q ss_pred hC
Q 040261 296 SN 297 (343)
Q Consensus 296 ~~ 297 (343)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.11 E-value=3.1e-05 Score=51.23 Aligned_cols=79 Identities=13% Similarity=0.041 Sum_probs=37.8
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 040261 35 TVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR 114 (343)
Q Consensus 35 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (343)
+|+..|++..+.. +.+...+..+..++...|++++|...+++..+... .+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455444432 23344455555555555555555555555554431 134444445555555555555555555444
Q ss_pred h
Q 040261 115 A 115 (343)
Q Consensus 115 ~ 115 (343)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=3.7e-06 Score=55.22 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 040261 87 AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151 (343)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (343)
...+..+...+...|++++|++.|++..+.... +...+..+..++...|++++|...+++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 334444555555555555555555555554322 4445555555555555555555555555554
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.10 E-value=2e-05 Score=54.60 Aligned_cols=100 Identities=7% Similarity=-0.006 Sum_probs=78.6
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcc----------hHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040261 27 LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVS----------PGFVVLGRILRSCFTPDAVTFTSLIKG 96 (343)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (343)
..+.+.+++|+..++...+.. +.+...|..+..++...++++ +|+..|++.++..+. +..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 345677899999999988866 557888988888888887764 999999999987533 67788889999
Q ss_pred HhhcC-----------cHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040261 97 LCAES-----------RIMEAAALFTKLRAFGCKPDVFTYTTLIN 130 (343)
Q Consensus 97 ~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (343)
|...| ++++|++.|++..+. .|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 88764 899999999999987 556555544443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.05 E-value=9.1e-05 Score=46.32 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGY 313 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (343)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445555556666666666666666666553 3345556666666666666666666666665542 22344444444444
Q ss_pred H
Q 040261 314 C 314 (343)
Q Consensus 314 ~ 314 (343)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.98 E-value=3.8e-05 Score=49.39 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=47.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 040261 14 PPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILR 80 (343)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (343)
|.++.++..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.+++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567777777777778888888888887777654 33456777777777777777777777777664
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.92 E-value=6.4e-05 Score=52.15 Aligned_cols=96 Identities=9% Similarity=0.017 Sum_probs=53.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 040261 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK----------MDEASRLLELMIQIGVRPDASVYNTLMDGFCLT 281 (343)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (343)
+.+++|...++...+.. +.+...|..+..++...++ +++|+..|++.++.+ +.+...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 44555555555555542 3344455545555554443 346666666666654 33455666666666655
Q ss_pred -----------CchHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 040261 282 -----------GRVNRAKELFVSMESNGCMRDVFSYGILIN 311 (343)
Q Consensus 282 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 311 (343)
|++++|.+.|++..+. .|+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3677777777777764 465555544333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=9.8e-05 Score=47.39 Aligned_cols=63 Identities=16% Similarity=0.058 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 040261 51 DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR 114 (343)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (343)
+...+..+..++...|++++|...|++.++..+. +...|..+..++...|++++|.+.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555555555554322 34455555555555555555555555544
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.73 E-value=0.002 Score=51.47 Aligned_cols=134 Identities=7% Similarity=-0.023 Sum_probs=92.6
Q ss_pred CChhhHHHHHHHHHh--cC---ChhHHHHHHHHhHhCCCCCC-HHHHHHHHHHHHh---cCCcc--hH---HHHHHHHHH
Q 040261 15 PPVCSFNILFGCLAK--NK---HYDTVLSLFKRLNSIGLFPD-LYTYNILINCFCK---MGRVS--PG---FVVLGRILR 80 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~--~a---~~~~~~~~~ 80 (343)
.+..+|...+.+... .+ +..+|+.+|++..+.. |+ ...|..+..++.. .+... .. ...+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 688888888766543 33 3578999999998854 54 4455544444321 11111 11 111221111
Q ss_pred -cCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 040261 81 -SCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 81 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++....+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1124567788887777777899999999999999985 788888888999999999999999999998854
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.63 E-value=0.0023 Score=51.07 Aligned_cols=65 Identities=9% Similarity=-0.016 Sum_probs=37.0
Q ss_pred CChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 196 PDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
.+...|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...++++.+.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 345555555544455566666666666666553 45555555555555666666666666666554
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.47 E-value=0.00029 Score=44.89 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=43.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY-TYNILINCFCKMGRVSPGFVVLGRILRSC 82 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (343)
....+.+.|++++|+..|++..+.. +.+.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4556677788888888888877654 33556 77777777888888888888888877764
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.44 E-value=0.00033 Score=44.63 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=32.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 240 MNELCKNGKMDEASRLLELMIQIGVRPDAS-VYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
...+...|++++|...++++.+.. +.+.. .+..+..+|...|++++|...|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334455566666666666655543 33444 5555555666666666666666665554
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.42 E-value=0.00061 Score=56.41 Aligned_cols=87 Identities=8% Similarity=-0.124 Sum_probs=55.8
Q ss_pred hCCChhHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHhcCCchHHHHHHHHHHHhC-----CC-Cc-cHHHHHHHH
Q 040261 245 KNGKMDEASRLLELMIQI-----G-VRPD-ASVYNTLMDGFCLTGRVNRAKELFVSMESN-----GC-MR-DVFSYGILI 310 (343)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~ 310 (343)
..|++++|+.++++..+. | -.|+ ..+++.|..+|...|++++|..++++..+. |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777776553 1 0122 356777777788888888887777766531 21 12 234577777
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 040261 311 NGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~~~~ 331 (343)
..|...|++++|..++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 778888888888777777653
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.37 E-value=0.00074 Score=55.92 Aligned_cols=88 Identities=8% Similarity=-0.096 Sum_probs=69.5
Q ss_pred hccCcHHHHHHHHHHHHHc---CCCC---C-HHHHHHHHHHHHhCCChhHHHHHHHHHHHc-----C-CCCC-HHHHHHH
Q 040261 209 CYANDWNEAKCLFIEMMDQ---GVQP---N-VVTFNVIMNELCKNGKMDEASRLLELMIQI-----G-VRPD-ASVYNTL 274 (343)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~---~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l 274 (343)
...|++++|..++++.++. -+.| + ..+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3467899999999987753 1122 2 467889999999999999999999988753 2 1233 4578899
Q ss_pred HHHHhcCCchHHHHHHHHHHHh
Q 040261 275 MDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
...|..+|++++|..++++..+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.36 E-value=0.002 Score=44.25 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=55.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcCCchHH
Q 040261 212 NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNG---KMDEASRLLELMIQIGVRP--DASVYNTLMDGFCLTGRVNR 286 (343)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 286 (343)
.....+.+.|.+..+.+ .++..+.-.+..++++.+ +.++++.+++...+.+ .| +...+-.+.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 34555666666666655 356666666777777777 5557888887777764 23 24445555567778888888
Q ss_pred HHHHHHHHHhC
Q 040261 287 AKELFVSMESN 297 (343)
Q Consensus 287 a~~~~~~~~~~ 297 (343)
|.+.++.+.+.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888887774
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.34 E-value=0.0029 Score=39.66 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCC
Q 040261 230 QPNVVTFNVIMNELCKNGK---MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNG 298 (343)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (343)
+.+...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|...|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455666666666654444 577777777777765 5556667777777777777777777777777653
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.33 E-value=0.0018 Score=40.67 Aligned_cols=66 Identities=12% Similarity=-0.034 Sum_probs=37.3
Q ss_pred CChhhHHHHHHHHHhcCC---hhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 15 PPVCSFNILFGCLAKNKH---YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
.++..+..+..++...++ .++|..++++..+.. +.+......+...+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455556666655543333 456666666665543 334455555555666666666666666666554
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.29 E-value=0.0018 Score=53.75 Aligned_cols=89 Identities=11% Similarity=-0.034 Sum_probs=47.2
Q ss_pred HHHhCCChhHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHhcCCchHHHHHHHHHHHhC-----C-CCc-cHHHHH
Q 040261 242 ELCKNGKMDEASRLLELMIQIG---VRP----DASVYNTLMDGFCLTGRVNRAKELFVSMESN-----G-CMR-DVFSYG 307 (343)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~ 307 (343)
.+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|..++++..+. | ..| ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566666666666665431 011 1345556666666666666666666654421 1 011 223455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 040261 308 ILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 308 ~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
.|...|...|++++|..++++.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 56666666666666666666554
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.29 E-value=0.0038 Score=56.58 Aligned_cols=154 Identities=10% Similarity=0.057 Sum_probs=87.3
Q ss_pred HHHHhcCChhHHHH-HHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcH
Q 040261 25 GCLAKNKHYDTVLS-LFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103 (343)
Q Consensus 25 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (343)
......+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+. |. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 34455677777766 44211 1122336666777777777777655421 11 112334556888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHH
Q 040261 104 MEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAK 183 (343)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 183 (343)
++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------------HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------------hhhhHHHHHHcCCHHHHH
Confidence 8888775443 2667788888888888888888888877543 334455555566666555
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHH
Q 040261 184 ELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223 (343)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (343)
++-+.....| -++....++.+.|++++|.+++.+
T Consensus 728 ~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 728 TLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544444332 123333344445555555555443
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.26 E-value=0.0029 Score=52.50 Aligned_cols=99 Identities=11% Similarity=-0.056 Sum_probs=66.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCC-CccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC-----C--CCCChh
Q 040261 128 LINGLCRTGHTIVALNLFEEMANGNGEF-GVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE-----N--INPDVV 199 (343)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~ 199 (343)
.+.-+.+.|++++|+.++++........ +..-+....+++.+..+|...|++++|+.++++...- | .+....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999999988654322 1111122357788888888899999998888776431 1 112245
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHH
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMD 226 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (343)
+++.+...|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 577777777788888888777776653
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.19 E-value=0.015 Score=44.61 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-Cch
Q 040261 214 WNEAKCLFIEMMDQGVQPN---VVTFNVIMNELCKN-----GKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLT-GRV 284 (343)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 284 (343)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34555555555554 333 34555666666653 66666666666666653211245555555555553 666
Q ss_pred HHHHHHHHHHHhCC
Q 040261 285 NRAKELFVSMESNG 298 (343)
Q Consensus 285 ~~a~~~~~~~~~~~ 298 (343)
+++.+.+++.....
T Consensus 257 ~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 257 AGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 66666666666653
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.99 E-value=0.012 Score=40.46 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=58.5
Q ss_pred hhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHcCCCc--cHHHHHHHHHHHhhcCcHHHHH
Q 040261 33 YDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMG---RVSPGFVVLGRILRSCFTP--DAVTFTSLIKGLCAESRIMEAA 107 (343)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 107 (343)
...+.+-|.+....| +++..+...+..++++++ +.+++..+++.+.+.. .| +...+..+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345555666655555 367777777777888877 5668888888888764 23 3455556777778888888888
Q ss_pred HHHHHHHhc
Q 040261 108 ALFTKLRAF 116 (343)
Q Consensus 108 ~~~~~~~~~ 116 (343)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888876
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.98 E-value=0.023 Score=51.52 Aligned_cols=134 Identities=14% Similarity=0.126 Sum_probs=91.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHH
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKG 96 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (343)
......++..+.+.|..++|+++.+. |. .-+......|+++.|.++.+.+ .+...|..+...
T Consensus 629 ~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~ 690 (814)
T 3mkq_A 629 KDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDA 690 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHH
Confidence 33447777788888888888876531 11 1133456789999998886443 367899999999
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhc
Q 040261 97 LCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKE 176 (343)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (343)
+.+.++++.|.+.|.++.+ +..+...+...++.+...++.+.....+ -++....+|.+.
T Consensus 691 al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------------~~~~A~~~~~~~ 749 (814)
T 3mkq_A 691 SLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------------KFNLAFNAYWIA 749 (814)
T ss_dssp HHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------------chHHHHHHHHHc
Confidence 9999999999999998763 3455556666777777666655555443 234444455666
Q ss_pred CChHHHHHHHHHh
Q 040261 177 GFVDKAKELFLKM 189 (343)
Q Consensus 177 ~~~~~a~~~~~~~ 189 (343)
|++++|++++.++
T Consensus 750 g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 750 GDIQGAKDLLIKS 762 (814)
T ss_dssp TCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHc
Confidence 7777777666554
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.052 Score=38.27 Aligned_cols=99 Identities=11% Similarity=0.158 Sum_probs=50.0
Q ss_pred HhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 040261 63 CKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVAL 142 (343)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 142 (343)
.+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+..+ +..+.-.|...|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4455666655555443 1455566666666666666666666655442 233333444555555554
Q ss_pred HHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 040261 143 NLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLK 188 (343)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (343)
++-+.....+ -++.....+.-.|+++++.++|.+
T Consensus 81 kla~iA~~~g------------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444443332 233333444455666666655543
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.93 E-value=0.011 Score=37.93 Aligned_cols=67 Identities=7% Similarity=-0.004 Sum_probs=43.9
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 15 PPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG------LFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
.+...+..+...+.+.|++..|...|+...+.- -.+...++..+..++.+.|+++.|...++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355566677777777888888877777765421 1234456666667777777777777777776654
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.89 E-value=0.036 Score=42.58 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhhhCCCCCC---hhhHHHHHHHHhcc-----CcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCh
Q 040261 179 VDKAKELFLKMKDENINPD---VVTYTSLIRGFCYA-----NDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKN-GKM 249 (343)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 249 (343)
...|...+++..+.. |+ ...|..+...|.+. |+.++|...|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 557777777777753 55 56788888888884 99999999999999874222366677778888774 999
Q ss_pred hHHHHHHHHHHHcCCC--CCHHHHHH
Q 040261 250 DEASRLLELMIQIGVR--PDASVYNT 273 (343)
Q Consensus 250 ~~a~~~~~~~~~~~~~--~~~~~~~~ 273 (343)
+.+.+.+++..+.... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999999987655 55444443
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.85 E-value=0.02 Score=36.67 Aligned_cols=68 Identities=12% Similarity=-0.031 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC------CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 040261 50 PDLYTYNILINCFCKMGRVSPGFVVLGRILRSC------FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117 (343)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (343)
.+...+..+...+.+.|++..|..+|+...+.. ..+...++..+..++.+.|+++.|...+++..+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 355667778888899999999999999887641 12356778888999999999999999999988763
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.82 E-value=0.02 Score=37.81 Aligned_cols=65 Identities=18% Similarity=0.042 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHhcCCchHH---HHHHHHHHHhCCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 266 PDASVYNTLMDGFCLTGRVNR---AKELFVSMESNGCMR--DVFSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
++..+-..+..++++..+... +..+++.+...+ .| .......|.-++.+.|++++|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444444444443332 444444444432 11 222233344445555555555555555543
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.81 E-value=0.052 Score=36.09 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=81.1
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCC
Q 040261 99 AESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGF 178 (343)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (343)
-.|..++..++..+.... .+..-++-++--....-+-+-..++++..-... | ...+|+
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF---------D----------is~C~N 76 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF---------D----------LDKCQN 76 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS---------C----------GGGCSC
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc---------C----------cHhhhc
Confidence 346666667776666654 244445555544455555555555555544332 1 123445
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 040261 179 VDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLEL 258 (343)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (343)
.......+-.+-. +.......+......|.-++..+++..+... .+|++...-.+..+|.+.|+..++.+++.+
T Consensus 77 lKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 77 LKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp THHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 5555444443322 4455566666677777777777777775443 366677777777777777777777777777
Q ss_pred HHHcCCC
Q 040261 259 MIQIGVR 265 (343)
Q Consensus 259 ~~~~~~~ 265 (343)
+.+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 7777643
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.81 E-value=0.055 Score=36.77 Aligned_cols=114 Identities=13% Similarity=0.071 Sum_probs=82.6
Q ss_pred CCCChhhHHHHHHHHHhcCCh------hHHHHHHHHhHhCCCCCCHH-HHHHHHH------HHHhcCCcchHHHHHHHHH
Q 040261 13 SPPPVCSFNILFGCLAKNKHY------DTVLSLFKRLNSIGLFPDLY-TYNILIN------CFCKMGRVSPGFVVLGRIL 79 (343)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~ 79 (343)
.|.|.++|-..+..+-+.|+. ++.+++|++.... ++|+.. .|...+. .+...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 357899999999999999999 8999999988763 466432 1111111 1234489999999999998
Q ss_pred HcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040261 80 RSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLI 129 (343)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (343)
+.+-.- ...|......-.+.|+...|.+++.+.+..+.+|. ..+...+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL 135 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 753332 77777788888899999999999999999877643 3333333
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.59 E-value=0.025 Score=38.38 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=70.8
Q ss_pred CChhhHHHHHHHHhccCcH------HHHHHHHHHHHHcCCCCCH----HHHHHHHHHH---HhCCChhHHHHHHHHHHHc
Q 040261 196 PDVVTYTSLIRGFCYANDW------NEAKCLFIEMMDQGVQPNV----VTFNVIMNEL---CKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~ 262 (343)
-|..+|-..+...-+.|++ +...++|++.... ++|+. ..|-.+---| ...+|.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566677777766666777 7777888877775 45542 1222222211 2356788888888888665
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHH
Q 040261 263 GVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310 (343)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 310 (343)
+-+. ...|....+.-.++|++..|.+++.+....+.. +.......+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~ 135 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIAL 135 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHH
Confidence 3233 677777777777888888888888888876533 333333333
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.32 E-value=9.3e-07 Score=71.91 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=113.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIK 95 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (343)
.+.+|..|..+..+.++..+|++-|- +. .|+..|..++.+..+.|.+++-..++....+..-. +..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke--~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS--TTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc--cccHHHHHH
Confidence 45678888888888888887777652 21 24556777888888888888888888766654323 333356788
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc--------------cccC
Q 040261 96 GLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGV--------------VCKP 161 (343)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~ 161 (343)
+|++.++..+-.+++. .|+..-...+.+-|...|.++.|.-+|..+.....--.. ....
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888887655433321 245555666777777777777776555544322110000 0122
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040261 162 DAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241 (343)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (343)
++.+|..+..+|...+++.-|...--.+.-. ..-...++..|-..|.+++.+.+++.-.... ......|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 3445555555555555554443332222211 1112223444555555555555555444221 234445555555
Q ss_pred HHHh
Q 040261 242 ELCK 245 (343)
Q Consensus 242 ~~~~ 245 (343)
.|++
T Consensus 272 LYsK 275 (624)
T 3lvg_A 272 LYSK 275 (624)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 5543
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.25 Score=34.86 Aligned_cols=131 Identities=14% Similarity=0.076 Sum_probs=93.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCc
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (343)
-.....+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 455667899999999998766 3678999999999999999999999987642 3345555566788
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHH
Q 040261 103 IMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182 (343)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 182 (343)
.+...++-+.....| -++.....+...|+++++.+++.+... +..-.......|..+.|
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------------~~eA~~~A~t~g~~~~a 134 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------------LPLAYAVAKANGDEAAA 134 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------------hHHHHHHHHHcCcHHHH
Confidence 777666655555443 245556667789999999999866432 11122223345677788
Q ss_pred HHHHHHh
Q 040261 183 KELFLKM 189 (343)
Q Consensus 183 ~~~~~~~ 189 (343)
.++.+.+
T Consensus 135 ~~~~~~~ 141 (177)
T 3mkq_B 135 SAFLEQA 141 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8887765
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.93 E-value=0.063 Score=35.42 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcch---HHHHHHHHHHcCCC-ccHHHHHHHHHHHhhcCcHHHHH
Q 040261 32 HYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSP---GFVVLGRILRSCFT-PDAVTFTSLIKGLCAESRIMEAA 107 (343)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 107 (343)
....+.+-|......| .++..+-..+..+++++.+... ++.+++.+.+.+.+ -.......+.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444455555444434 2555555556666666655444 66666666654311 12333344555666677777777
Q ss_pred HHHHHHHhc
Q 040261 108 ALFTKLRAF 116 (343)
Q Consensus 108 ~~~~~~~~~ 116 (343)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776665
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.53 E-value=0.3 Score=32.45 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHhcCCc---hHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 265 RPDASVYNTLMDGFCLTGR---VNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
.|+..+-..+..++++..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444444444432 23444444444443211122333344444555555555555555554
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.18 Score=44.71 Aligned_cols=126 Identities=14% Similarity=0.089 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHhHhCCCCCCHHHH--HHHHHHHHhcCC-cchHHHHHHHHHHc------CCCc-c---
Q 040261 21 NILFGCLAKNKH-YDTVLSLFKRLNSIGLFPDLYTY--NILINCFCKMGR-VSPGFVVLGRILRS------CFTP-D--- 86 (343)
Q Consensus 21 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~--- 86 (343)
..++..+.-.++ .+.|+.+|+++.... |...++ ..++..+...++ --+|.+++.+.++. ...+ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344555555666 578999999988754 433332 233333333332 22355555554421 1111 1
Q ss_pred -------HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 87 -------AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMA 149 (343)
Q Consensus 87 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (343)
....+.-.+.+...|+++-|+++.++.....+. +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112333345677789999999999999887332 57799999999999999999999998874
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.33 E-value=0.36 Score=32.20 Aligned_cols=140 Identities=12% Similarity=0.053 Sum_probs=88.6
Q ss_pred HhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccC
Q 040261 133 CRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN 212 (343)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 212 (343)
.-.|..++..++..+..... +..-||.++--....-+-+-..++++.+-+. .|. ...|
T Consensus 18 ildG~v~qGveii~k~~~ss---------ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~ 75 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---------TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQ 75 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCS
T ss_pred HHhhhHHHHHHHHHHHcCCC---------CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------Hhhh
Confidence 34677777777777766532 4445555555555555555566666655442 121 1233
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHH
Q 040261 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292 (343)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (343)
+.......+-.+ ..+.......+......|..++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.
T Consensus 76 NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 76 NLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 444433333322 234555666777888888888888888886443 37778888888888888888888888888
Q ss_pred HHHhCCCC
Q 040261 293 SMESNGCM 300 (343)
Q Consensus 293 ~~~~~~~~ 300 (343)
+..+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 88888753
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.27 E-value=1.7 Score=39.66 Aligned_cols=258 Identities=11% Similarity=0.045 Sum_probs=132.3
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCHH--HHHHHHHHHHhcCCcchHHHHHHHHHHcCC-------CccHHHHHHHHHHH
Q 040261 27 LAKNKHYDTVLSLFKRLNSIGLFPDLY--TYNILINCFCKMGRVSPGFVVLGRILRSCF-------TPDAVTFTSLIKGL 97 (343)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 97 (343)
....|+.++++.++......+...+.. .=..+.-.....|..+++..++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345677777777776654321012222 222222334455555567776666554321 01111122222223
Q ss_pred hhcCc-HHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHH
Q 040261 98 CAESR-IMEAAALFTKLRAFGCKPDVF--TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLC 174 (343)
Q Consensus 98 ~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (343)
+-.|. -+++.+.+..+.... .+... +-.++...+.-.|+.+....++..+.+.. ..+..-...+.-++.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-------~e~vrR~aalgLGll 535 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-------HGNITRGLAVGLALI 535 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-------cHHHHHHHHHHHHhh
Confidence 22232 245555555555431 11111 11223334556677777777777666532 112222233333444
Q ss_pred hcCChHHHHHHHHHhhhCCCCCChhhHH---HHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhH
Q 040261 175 KEGFVDKAKELFLKMKDENINPDVVTYT---SLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDE 251 (343)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 251 (343)
-.|+.+.+..+++.+.... .| ..-|. .+.-+|+..|+......++..+.... ..+......+.-++...|+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 6788888888887776542 12 22232 33456778888877777888887642 2334433444445556777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch-HHHHHHHHHHHh
Q 040261 252 ASRLLELMIQIGVRPDASVYNTLMDGFCLTGRV-NRAKELFVSMES 296 (343)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 296 (343)
+.++++.+.+.+ .|....-..+.-+....|.. .++..++..+..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777777666654 45544444444455555543 567778887765
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.21 E-value=1.8 Score=39.54 Aligned_cols=260 Identities=11% Similarity=0.065 Sum_probs=133.3
Q ss_pred HHhcCCcchHHHHHHHHHHcC--CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHH
Q 040261 62 FCKMGRVSPGFVVLGRILRSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGC-------KPDVFTYTTLINGL 132 (343)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 132 (343)
....|+.++++.++......+ -.+....-..+.-+....|...++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445667777776666554321 111222223333445555655567776666554311 01111122222233
Q ss_pred HhcCC-hHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc
Q 040261 133 CRTGH-TIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA 211 (343)
Q Consensus 133 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (343)
.-.|. -+++.+.+..+..... ......+-.++...+.-.|+.+....++..+.+.. .-+..-...+.-++...
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-----~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-----ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-----HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 33332 2355555555554331 00001122233444556777777777777766532 11222223333344467
Q ss_pred CcHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 040261 212 NDWNEAKCLFIEMMDQGVQPNVVTFN--VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKE 289 (343)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 289 (343)
|+.+.+..+++.+.... .|....-. .+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 78888888888777642 33322222 33456677888877777888887642 2233333333345556677777777
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 040261 290 LFVSMESNGCMRDVFSYGILINGYCKNKEI-EGALSLYSEML 330 (343)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 330 (343)
+++.+.+.+ .|..+.-..+.-+....|.. .+++.++..+.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 777666543 45555544555555555544 46677777765
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.20 E-value=1.2 Score=37.22 Aligned_cols=164 Identities=12% Similarity=0.170 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhC--CCCCC---hhhHHHHHHHHhccCcHHHHHHHHHHHHHc----CCCCC--HH
Q 040261 166 YSTITDGLCKEGFVDKAKELFLKMKDE--NINPD---VVTYTSLIRGFCYANDWNEAKCLFIEMMDQ----GVQPN--VV 234 (343)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~ 234 (343)
...|...+...|++.+|..++..+... +.... ...+...++.|...+++..|..++..+... ...|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788899999999999999997542 22111 345667788899999999999999887532 22222 24
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHH----HHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHH
Q 040261 235 TFNVIMNELCKNGKMDEASRLLELMIQI-GVRPDASVYN----TLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGIL 309 (343)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 309 (343)
.+...+..+...+++.+|-+.|.++.+. ....+...+. .++.+..-.+....-.+++.........++...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 5566777888899999999888877653 1111222221 1111212222222222333333322223567788888
Q ss_pred HHHHHhc--CChHHHHHHHHHH
Q 040261 310 INGYCKN--KEIEGALSLYSEM 329 (343)
Q Consensus 310 ~~~~~~~--~~~~~a~~~~~~~ 329 (343)
+.+|... .+++.+.+.|+..
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHhchHhhhHHHHHHHHHH
Confidence 8888764 3566666655443
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.13 E-value=0.64 Score=37.93 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=37.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHh-----CCCCccHHH
Q 040261 238 VIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMES-----NGCMRDVFS 305 (343)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 305 (343)
.++..+...|+++++...+..+.... +.+...+..++.++.+.|+..+|.+.|+++.+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455555666666666665555543 44555666666666666666666666655432 355555544
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.10 E-value=3.2e-05 Score=63.21 Aligned_cols=190 Identities=9% Similarity=0.048 Sum_probs=130.5
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHH
Q 040261 12 PSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFT 91 (343)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (343)
....++..|..++....+.|++++-+..+.-..+. ..+...=+.|+.+|++.++..+-.+++. .||..-..
T Consensus 78 IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq 148 (624)
T 3lvg_A 78 IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQ 148 (624)
T ss_dssp CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTH
T ss_pred HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHH
Confidence 33467778999999999999999999998765553 2344556789999999998776433321 34555555
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 040261 92 SLIKGLCAESRIMEAAALFTKLRAFG--------------------CKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151 (343)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (343)
.+.+-|...|.++.|.-+|..+.... -.-++.||..+-.+|...+++.-|.-.--.+.-.
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh 228 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH 228 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC
T ss_pred HHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc
Confidence 66666667776666666555432110 1236678999999999999998876655554433
Q ss_pred CCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHH
Q 040261 152 NGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIE 223 (343)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (343)
. .-...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- ++++..+.++.
T Consensus 229 a-----------deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 229 A-----------DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp S-----------SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred H-----------HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 2 223446778899999999999999876432 34577788888887775 44555444443
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.03 E-value=1.3 Score=42.05 Aligned_cols=190 Identities=14% Similarity=0.107 Sum_probs=115.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCC-------
Q 040261 128 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDE----NINP------- 196 (343)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~------- 196 (343)
++..+...+..+.+.++..- ++.++...-.+..++...|++++|.+.|.+.... ....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~ 886 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQ 886 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhh-----------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccc
Confidence 44455666666666554432 2334444455678899999999999999875321 0000
Q ss_pred -----------ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040261 197 -----------DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNV----VTFNVIMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 197 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
-..-|..++..+.+.+.++.+.++-....+....-+. ..|..+...+...|++++|...+-.+..
T Consensus 887 ~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 887 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 1123667777888888888888888777665322221 2577888999999999999998887766
Q ss_pred cCCCCCHHHHHHHHHHHhcCCch------------HHHHHHHHHHHhC--CCCccHHHHHHHHHHHHhcCChHHHH-HHH
Q 040261 262 IGVRPDASVYNTLMDGFCLTGRV------------NRAKELFVSMESN--GCMRDVFSYGILINGYCKNKEIEGAL-SLY 326 (343)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~------------~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~ 326 (343)
...+ ...+..|+...+..|.. ++..+++....+. .....+.-|..|-.-+..+|++.+|- -+|
T Consensus 967 ~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmY 1044 (1139)
T 4fhn_B 967 TPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIY 1044 (1139)
T ss_dssp SSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHH
Confidence 5433 45666666666655543 4444444332211 01112234566666667778777654 444
Q ss_pred HHHH
Q 040261 327 SEML 330 (343)
Q Consensus 327 ~~~~ 330 (343)
+.+.
T Consensus 1045 e~~~ 1048 (1139)
T 4fhn_B 1045 EKLS 1048 (1139)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.64 Score=41.37 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=72.0
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhCCC-hhHHHHHHHHHHHc------CCCC-C---
Q 040261 202 TSLIRGFCYAND-WNEAKCLFIEMMDQGVQPNVVTFN--VIMNELCKNGK-MDEASRLLELMIQI------GVRP-D--- 267 (343)
Q Consensus 202 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~--- 267 (343)
..++..+...++ .+.|..+++.+.+.. |...++. .++..+...++ --+|.+++.+..+. ..++ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 334444444555 577888888877763 3322222 22222222222 22344444444321 1111 1
Q ss_pred -------HHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040261 268 -------ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEM 329 (343)
Q Consensus 268 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 329 (343)
......-.+.+...|+++-|+.+.++....- +.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1122333445667788888888888887752 345788888899999999999988888777
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.77 E-value=2.9 Score=39.69 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHH
Q 040261 124 TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTS 203 (343)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (343)
-|..++..+.+.+.++.+.++-....+...... .......|..+.+.+...|++++|...+-.+..... -...+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~--~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDD--EDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC--HHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC--hhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 345555666666666666655555544321000 000112455556666666666666666655544322 2334444
Q ss_pred HHHHHhccCc------------HHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCChhHHH-HHHHHHHH
Q 040261 204 LIRGFCYAND------------WNEAKCLFIEMMDQ--GVQPNVVTFNVIMNELCKNGKMDEAS-RLLELMIQ 261 (343)
Q Consensus 204 l~~~~~~~~~------------~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 261 (343)
++...+..|. .++..+++..-.+. .+...+.-|..|-.-+...|++.+|- -+|+.+.+
T Consensus 977 LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 4444444333 34444444332221 11112233555555566677776654 44455544
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.28 E-value=1.3 Score=36.21 Aligned_cols=72 Identities=6% Similarity=0.015 Sum_probs=53.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQ-----IGVRPDASVYNT 273 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 273 (343)
...++.++...|++.++...+..+.... +.+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4445667777888888888888877663 55777888888888888888888888877654 477887665433
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.22 E-value=2.1 Score=35.69 Aligned_cols=96 Identities=13% Similarity=0.038 Sum_probs=70.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC--HH
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQ--GVQPN---VVTFNVIMNELCKNGKMDEASRLLELMIQI----GVRPD--AS 269 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~ 269 (343)
...+...+...|++.+|..++..+... +.... ...+...++.|...+++.+|..++.++... ..+|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356778889999999999999998754 22111 346667788999999999999999887532 21222 23
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHh
Q 040261 270 VYNTLMDGFCLTGRVNRAKELFVSMES 296 (343)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (343)
.+...+..+...+++.+|.+.|.++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 556677778888999998888877654
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.21 E-value=0.56 Score=31.58 Aligned_cols=68 Identities=13% Similarity=0.003 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 040261 49 FPDLYTYNILINCFCKMGRV---SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
.|+..+-..+..+++++.+. .+++.+++.+.+.+....-.....+.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 46666666666666666543 467778888777643334445555667788888888888888888876
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.17 E-value=0.59 Score=29.21 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040261 178 FVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241 (343)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (343)
|.=+..+-+..+....+.|++....+.+++|.+.+++..|.++++-+..+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344556666666666777777777777777777777777777777776552 333445555544
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.93 E-value=0.3 Score=32.45 Aligned_cols=68 Identities=13% Similarity=0.003 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 040261 49 FPDLYTYNILINCFCKMGRV---SPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
.|+..+--.+..+++++.+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46666655566666666543 457777777777653223455556667777888888888888888776
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.81 E-value=3.1 Score=36.27 Aligned_cols=279 Identities=10% Similarity=-0.047 Sum_probs=132.0
Q ss_pred ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHH
Q 040261 32 HYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFT 111 (343)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 111 (343)
...+....+++-.. .+.....-...+..+.+.+++...+.++.. .+.+...-.....+....|+..+|.....
T Consensus 54 ~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~ 126 (618)
T 1qsa_A 54 PAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAK 126 (618)
T ss_dssp CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 44555555444322 122223334556666677776655553332 12344444445666667787777777666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCChHH--HHHHHHHHHccCCCC-----CccccCCcc-hHHHHHHHHHhcCChHHHH
Q 040261 112 KLRAFGCKPDVFTYTTLINGLCRTGHTIV--ALNLFEEMANGNGEF-----GVVCKPDAI-TYSTITDGLCKEGFVDKAK 183 (343)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 183 (343)
.+-..|.. .+..+..++..+.+.|.... ...-++.+...+... ...++++.. ....++.... ++..+.
T Consensus 127 ~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~ 202 (618)
T 1qsa_A 127 ELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVL 202 (618)
T ss_dssp HHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHH
T ss_pred HHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHH
Confidence 66655432 34456666666665554433 222222222222000 000001110 0111111111 111111
Q ss_pred HHHHHhhhCCCCCChh---hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhCCChhHHHHHH
Q 040261 184 ELFLKMKDENINPDVV---TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV----IMNELCKNGKMDEASRLL 256 (343)
Q Consensus 184 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~ 256 (343)
..... ..++.. .+...+.-.. ..+.+.|...+....+.. ..+...... +.......+...++...+
T Consensus 203 ~~~~~-----~~~~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~ 275 (618)
T 1qsa_A 203 TFART-----TGATDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWR 275 (618)
T ss_dssp HHHHH-----SCCCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHH
T ss_pred HHHhc-----cCCChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 11111 011211 1111222222 336788888887776543 223322222 222233344345566666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 040261 257 ELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 331 (343)
...... ..+.....-.+....+.|+++.|...|+.|.... .........+.+++...|+.++|..+|+++..
T Consensus 276 ~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 276 DDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Hhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 654433 2344344444455556788888888888876532 12344455667778888888888888887753
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.72 E-value=0.74 Score=28.78 Aligned_cols=63 Identities=8% Similarity=0.112 Sum_probs=46.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 040261 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILIN 311 (343)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 311 (343)
|.-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++.++.+- .+....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455677777777777888888888888899988899999999888887642 233445655553
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.68 E-value=1 Score=30.32 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccH
Q 040261 230 QPNVVTFNVIMNELCKNGK---MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV 303 (343)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 303 (343)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|++..+.+.+. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 4555555556666666654 3457777777776542122334444555778888888888888888775 4543
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.88 E-value=1.3 Score=29.35 Aligned_cols=60 Identities=12% Similarity=0.208 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040261 181 KAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMN 241 (343)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (343)
+..+-+..+...++.|++....+.+++|.+.+++..|.++++-+..+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45556666667777788888888888888888888888888777665 2334555665554
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.56 E-value=1.5 Score=29.12 Aligned_cols=61 Identities=8% Similarity=0.109 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHH
Q 040261 249 MDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILI 310 (343)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 310 (343)
.-+..+-++.+...++.|++.+..+.+++|.+.+|+..|.++|+.++.+- .+....|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 33455555566666667777777777777777777777777777766542 23333455444
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.47 E-value=1.2 Score=30.92 Aligned_cols=65 Identities=11% Similarity=-0.060 Sum_probs=45.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCH-------HHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIG-LFPDL-------YTYNILINCFCKMGRVSPGFVVLGRILR 80 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (343)
+..++..-+..+...|.++.|+-+.+.+.... ..|+. .++..+..++...+++..|...|++.++
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34556666788888899999888887755421 12331 2566677888889999999999988754
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.73 E-value=5.3 Score=33.07 Aligned_cols=61 Identities=8% Similarity=0.053 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcC--CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 040261 54 TYNILINCFCKMGRVSPGFVVLGRILRSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLR 114 (343)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (343)
+...+...+.+.|+++.|.+.+.++.... ...-...+-..++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44555556666666666666666655421 22234455555566666666666666555543
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.17 E-value=6.8 Score=30.68 Aligned_cols=149 Identities=15% Similarity=0.046 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHH----HHHHHHHcCCCCCHHHHHHHHHH
Q 040261 167 STITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKC----LFIEMMDQGVQPNVVTFNVIMNE 242 (343)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~ 242 (343)
.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +++-+.+.+++++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3344445666677777666544221 2233344444333 33444455666676666666666
Q ss_pred HHhCCChh-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHhcCCchHHHHHHHH----------------HHHhC--
Q 040261 243 LCKNGKMD-EASRLLELMIQ----IG--VRPDASVYNTLMDGFCLTGRVNRAKELFV----------------SMESN-- 297 (343)
Q Consensus 243 ~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------~~~~~-- 297 (343)
+.....-+ .-.++++++++ .| ..-++.....+...|.+.|++.+|+..|- ...+.
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 55432211 12333444432 11 12356667777777777777777766442 11111
Q ss_pred CCCccHHHH-HHHHHHHHhcCChHHHHHHHHHHH
Q 040261 298 GCMRDVFSY-GILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 298 ~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
|.+-+...| ...+--|.-.|+...|..+++...
T Consensus 182 ~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 182 IEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 221122222 222334667788888888887665
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.50 E-value=7.9 Score=30.61 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=13.9
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 040261 311 NGYCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~~~~ 331 (343)
--|...++...|..+++...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 346667788888777666553
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.14 E-value=5 Score=27.89 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHH
Q 040261 272 NTLMDGFCLTGRVNRAKELFVSME 295 (343)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~ 295 (343)
-.+..+|.+.+++++|+.+++.+.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335556666666666666665543
No 261
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=87.32 E-value=1.7 Score=29.73 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=45.4
Q ss_pred hhHHHHHHHHhHhCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHH
Q 040261 33 YDTVLSLFKRLNSIGLFP-DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAV 88 (343)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (343)
.+++.++|..|...|+-. -+..|......+...|++.+|.++|..-++.+..|-..
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 345899999998887654 34578888888999999999999999999987777543
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.19 E-value=9.3 Score=29.93 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHH
Q 040261 232 NVVTFNVIMNELCKNGKMDEASRLL 256 (343)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (343)
++.....+...|.+.+++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4556666677777777777766655
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.90 E-value=5.5 Score=30.28 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=71.3
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC--ccHHHHHHHHHHHhhcCc
Q 040261 25 GCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT--PDAVTFTSLIKGLCAESR 102 (343)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 102 (343)
..+.+.|++++|++....-++.. |-|...-..++..+|-.|++++|.+-++...+.... |-...|..+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 45667888999988888877765 567777788888899999999998888887765321 122233333332
Q ss_pred HHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHH--HhcCChHHHHHHHHHHHccC
Q 040261 103 IMEAAALFTKLRAFGCKP-----DVFTYTTLINGL--CRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~ 152 (343)
+..=.+...-+-.| ...-...++.+. ...|+.++|..+-.++.+..
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 22222222222111 222233444443 34688888888888876654
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.77 E-value=10 Score=31.37 Aligned_cols=62 Identities=8% Similarity=-0.067 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFG--CKPDVFTYTTLINGLCRTGHTIVALNLFEEMAN 150 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (343)
+...+...|.+.|+++.|.+.+.++.... ...-...+...+..+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45566777777777777777777776542 222344566667777777777777777766543
No 265
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=85.30 E-value=2.5 Score=29.34 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=45.4
Q ss_pred hHHHHHHHHhHhCCCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHH
Q 040261 34 DTVLSLFKRLNSIGLFPD-LYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT 89 (343)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (343)
+.+.++|..|...|+-.. +..|......+-..|++.+|.++|..-++.+..|-...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 457889999988876543 45688888889999999999999999999887776543
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.20 E-value=8.7 Score=27.72 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=43.5
Q ss_pred CCcchHHHHHHHHHHcCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCH
Q 040261 66 GRVSPGFVVLGRILRSCFTPD-AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDV 122 (343)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 122 (343)
+....+.++|..|...|+... +..|......+-..|++.+|.++|+.-++.+..|-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 335688888888888765543 556777788888889999999999988888777643
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.27 E-value=5.6 Score=24.79 Aligned_cols=88 Identities=14% Similarity=0.114 Sum_probs=55.7
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHH
Q 040261 29 KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108 (343)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (343)
-....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.. ..||...|..+.. .+.|..+++..
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 34567888888888776542 2222233344567788888887766543 3678887766655 36677778877
Q ss_pred HHHHHHhcCCCCCHHHH
Q 040261 109 LFTKLRAFGCKPDVFTY 125 (343)
Q Consensus 109 ~~~~~~~~~~~~~~~~~ 125 (343)
.+.++...| +|....|
T Consensus 90 rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTCS-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 777777665 3344333
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.78 E-value=6 Score=24.72 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=56.6
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHH
Q 040261 29 KNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAA 108 (343)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (343)
-....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.. ..||...|..+.. .+.|..+++..
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 35567888888888776542 2222233345567888888888776554 3678888776655 36677777777
Q ss_pred HHHHHHhcCCCCCHHHH
Q 040261 109 LFTKLRAFGCKPDVFTY 125 (343)
Q Consensus 109 ~~~~~~~~~~~~~~~~~ 125 (343)
.+.++...| .|....|
T Consensus 91 rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCC-CHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 777777665 3344443
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.57 E-value=18 Score=29.43 Aligned_cols=166 Identities=11% Similarity=0.027 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhc-CChHHHHHHHHHHHccCCCCCccccCCc
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAF-GCKP---DVFTYTTLINGLCRT-GHTIVALNLFEEMANGNGEFGVVCKPDA 163 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 163 (343)
....+...|.+.|+.++..+++...+.. +.-+ .......++..+... +..+.-.++.....+.. ....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-------~~~~ 93 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-------KQEK 93 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-------HHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-------HHHH
Confidence 3444556666666666666665554321 0001 122344455555443 22333333333333321 1122
Q ss_pred chH------HHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-----hhhHHHHHHHHhccCcHHHHHHHHHHHHHc--CCC
Q 040261 164 ITY------STITDGLCKEGFVDKAKELFLKMKDENINPD-----VVTYTSLIRGFCYANDWNEAKCLFIEMMDQ--GVQ 230 (343)
Q Consensus 164 ~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~ 230 (343)
.+| ..++..|...|++.+|..++..+.+.--..| ...+..-++.|...+++.++...+...... .+.
T Consensus 94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence 333 2578899999999999999988765311112 233555567788899999999988877643 233
Q ss_pred CCHHHHHHH----HHHHH-hCCChhHHHHHHHHHHH
Q 040261 231 PNVVTFNVI----MNELC-KNGKMDEASRLLELMIQ 261 (343)
Q Consensus 231 ~~~~~~~~l----~~~~~-~~~~~~~a~~~~~~~~~ 261 (343)
+++.....+ ...+. ..+++..|...|-+..+
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 444333222 23455 78999999888866643
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.47 E-value=12 Score=27.07 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=36.8
Q ss_pred cCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 040261 211 ANDWNEAKCLFIEMMDQGVQPN-VVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPD 267 (343)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 267 (343)
.+...++..+|..|...|+--. ...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3345567777777776655433 44555666666777777777777777777665553
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=80.89 E-value=20 Score=28.73 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=31.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCC
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK--MDEASRLLELMIQIGVRPD 267 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 267 (343)
...++.-|...++.++|...++++..-... ...+...+..++.+.++ .+....++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 355566666667777777777666321100 12222333333333222 3345566666665554433
No 272
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=80.75 E-value=3.7 Score=30.16 Aligned_cols=67 Identities=16% Similarity=0.062 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFP-DLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDA 87 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 87 (343)
-|-.+--.|+.. .+++.++|..|...|+-. -+..|......+...|++.+|.++|..-++.+..|-.
T Consensus 118 RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 118 RYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp HHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred HHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 344444444443 467889999998887654 3457888888899999999999999999988777654
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.47 E-value=21 Score=28.22 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHH
Q 040261 232 NVVTFNVIMNELCKNGKMDEASRLL 256 (343)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (343)
++.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4455556666777777777766665
No 274
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=79.27 E-value=26 Score=29.14 Aligned_cols=71 Identities=13% Similarity=0.004 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 040261 46 IGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFG 117 (343)
Q Consensus 46 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (343)
.|++--...|..-+..+...|++++|.++-....+ |+-.+..|.+.+-..=...|+..-.+.+|..+.+.|
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 34443344455555555555555555554443322 222244444433333333344444444444444443
No 275
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=77.94 E-value=11 Score=29.36 Aligned_cols=68 Identities=7% Similarity=0.091 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc--HHHHHHHHHHHHHcCCCCCHH
Q 040261 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND--WNEAKCLFIEMMDQGVQPNVV 234 (343)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 234 (343)
...++.-|...|+.++|.+.++++...... .......+..+.-+.++ .+....++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 456677777788888888888877531111 12223333344444322 445666777776666544433
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.18 E-value=11 Score=23.57 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHH
Q 040261 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292 (343)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (343)
..++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+... -||...|.+|. -.+.|-.+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45666666666655432 22111122334556677777766654432 46666665553 245666666666666
Q ss_pred HHHhCC
Q 040261 293 SMESNG 298 (343)
Q Consensus 293 ~~~~~~ 298 (343)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666554
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.31 E-value=12 Score=23.48 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHH
Q 040261 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292 (343)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (343)
..++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+... -||...|.+|.. .+.|-.+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666555432 11111122334556677776666655442 456665555533 45566666666665
Q ss_pred HHHhCC
Q 040261 293 SMESNG 298 (343)
Q Consensus 293 ~~~~~~ 298 (343)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.70 E-value=31 Score=28.11 Aligned_cols=168 Identities=13% Similarity=-0.058 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCC---CHHHHHHHHHHHHhcCC-cchHHHHHHHHHHcCCCccHHHH--
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFKRLNSI-GLFP---DLYTYNILINCFCKMGR-VSPGFVVLGRILRSCFTPDAVTF-- 90 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-- 90 (343)
.+...|...|.+.|+.++..+++...... +.-| .......++..+....+ .+.-.++..+..+..-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45677899999999999999999876542 1112 23346677777766543 23333444333321100 11223
Q ss_pred ----HHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccC
Q 040261 91 ----TSLIKGLCAESRIMEAAALFTKLRAFGCKPD-----VFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 161 (343)
Q Consensus 91 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (343)
..++..|...|++.+|.+++.++.+.=...| ...+..-++.|...++..++...+......... +.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a----i~~ 174 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA----IYC 174 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----SCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc----CCC
Confidence 2578889999999999999999876421112 234556678899999999999999887654310 112
Q ss_pred CcchHH----HHHHHHH-hcCChHHHHHHHHHhh
Q 040261 162 DAITYS----TITDGLC-KEGFVDKAKELFLKMK 190 (343)
Q Consensus 162 ~~~~~~----~l~~~~~-~~~~~~~a~~~~~~~~ 190 (343)
++.... .-...+. ..+++..|...|-+..
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 222211 1123455 7899999988876653
No 279
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=74.26 E-value=3.3 Score=31.89 Aligned_cols=41 Identities=5% Similarity=-0.114 Sum_probs=17.1
Q ss_pred HHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHH
Q 040261 62 FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106 (343)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (343)
.+..|+.+- .+.+.+.|..++...-...+...+..|+.+-+
T Consensus 38 A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v 78 (285)
T 3kea_A 38 AIADNNVRL----VCTLLNAGALKNLLENEFPLHQAATLEDTKIV 78 (285)
T ss_dssp HHHTTCHHH----HHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH
T ss_pred HHHcCCHHH----HHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 344565443 33344444443332212233444455554433
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.53 E-value=19 Score=24.63 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHcCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC
Q 040261 69 SPGFVVLGRILRSCFTPD-AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121 (343)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 121 (343)
+.+.++|..|...|+-.. +..|......+-..|++.+|.++|+.-++.+..|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 447778888877665433 55666677777777888888888888777766664
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.16 E-value=8.5 Score=29.17 Aligned_cols=88 Identities=7% Similarity=-0.061 Sum_probs=40.0
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhcCCchHHHHHHHHHHHhCCCCccH---HHHHHHHHHHHhcCC
Q 040261 244 CKNGKMDEASRLLELMIQIGVRPDASV--YNTLMDGFCLTGRVNRAKELFVSMESNGCMRDV---FSYGILINGYCKNKE 318 (343)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 318 (343)
+..++......+.+.+.+.|..++... -...+...++.|+.+-+..+++. .|..++. .-.+ .+....+.|.
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t-~l~~A~~~~~ 265 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKT-ALLLAVELKL 265 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCc-HHHHHHHcCc
Confidence 345555555666677777665543211 11223334455666554444431 3332221 1111 2222334444
Q ss_pred hHHHHHHHHHHHhCCCCCCcc
Q 040261 319 IEGALSLYSEMLSKGIRPTVV 339 (343)
Q Consensus 319 ~~~a~~~~~~~~~~~~~p~~~ 339 (343)
. ++.+-+++.|..|+..
T Consensus 266 ~----~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 266 K----KIAELLCKRGASTDCG 282 (285)
T ss_dssp H----HHHHHHHHHSSCSCCS
T ss_pred H----HHHHHHHHcCCCCCcc
Confidence 3 3444455667766654
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=72.10 E-value=28 Score=25.94 Aligned_cols=24 Identities=4% Similarity=0.065 Sum_probs=17.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHh
Q 040261 22 ILFGCLAKNKHYDTVLSLFKRLNS 45 (343)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~ 45 (343)
--++.+....++++|++++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 346777888888888888876643
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.10 E-value=38 Score=28.76 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHH
Q 040261 54 TYNILINCFCKMGRVSPGFVVLGRI 78 (343)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~ 78 (343)
.+|.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 4555666666666666666666554
No 284
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.90 E-value=38 Score=25.82 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=32.6
Q ss_pred HHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 040261 62 FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
..+.|+++.+++....-++.. +-|...-..++..+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445566666666666655554 225555556666666666666666666666554
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.20 E-value=33 Score=25.77 Aligned_cols=214 Identities=16% Similarity=0.122 Sum_probs=95.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH---HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHH--HHHHHHH
Q 040261 22 ILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY---TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT--FTSLIKG 96 (343)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 96 (343)
..+...++.|+.+....+++ .|..++.. .-...+...+..|+.+ +++.+.+.|..++... -...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 34556677888766555554 34333211 1112344445566644 4555555555443211 1122333
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccC-------CcchH
Q 040261 97 LCAESRIMEAAALFTKLRAFGCKPDVF---TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP-------DAITY 166 (343)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~ 166 (343)
.+..|+.+ +++.+.+.|..++.. ..+ .+...+..|+.+.+..+++ .+......... +..-.
T Consensus 79 A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 79 AAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYK----RGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHH----TTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHH----hCCCcccccccHHHHHhhccCCC
Confidence 34556654 344444555444321 122 2334455676654444433 33111000000 11111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCC---ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHH--HHHHHH
Q 040261 167 STITDGLCKEGFVDKAKELFLKMKDENINP---DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVT--FNVIMN 241 (343)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~ 241 (343)
..+...+..|+.+-+..+++.. |..+ +....+.+..+ +..++......+++.+.+.|..++... -...+.
T Consensus 150 -t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 150 -TALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp -CHHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred -cHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 2334445567766655555431 2222 22233333333 344554445667777777776554321 112344
Q ss_pred HHHhCCChhHHHHHHH
Q 040261 242 ELCKNGKMDEASRLLE 257 (343)
Q Consensus 242 ~~~~~~~~~~a~~~~~ 257 (343)
..+..|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 4456677665444443
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.18 E-value=37 Score=25.00 Aligned_cols=54 Identities=7% Similarity=0.151 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHHcCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC
Q 040261 68 VSPGFVVLGRILRSCFTPD-AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPD 121 (343)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 121 (343)
.+.+.++|..|...|+-.. +..|......+-..|++.+|.++|+.-++.+..|-
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3577788888888765543 55677777888888999999999988888876763
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.06 E-value=30 Score=24.00 Aligned_cols=55 Identities=13% Similarity=0.040 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHcCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHH
Q 040261 69 SPGFVVLGRILRSCFTPD-AVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF 123 (343)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 123 (343)
+.+.++|..|...|+-.. +..|......+-..|++.+|.++|..-++.+..|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 558889999988876544 5667778888888899999999999999988777544
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=65.38 E-value=40 Score=25.12 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=45.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC--CCCC----ChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040261 169 ITDGLCKEGFVDKAKELFLKMKDE--NINP----DVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNE 242 (343)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (343)
-+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 466677777888887777765432 1221 1111122222222222222333333333 22 3345555556666
Q ss_pred HHhCCChhHHHHHHHHHHH
Q 040261 243 LCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~ 261 (343)
+.+.|+.++|..+|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7777777777777766543
No 289
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=61.03 E-value=36 Score=23.12 Aligned_cols=35 Identities=3% Similarity=-0.058 Sum_probs=16.5
Q ss_pred CcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC
Q 040261 67 RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101 (343)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (343)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554444444444444444444444
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=59.86 E-value=43 Score=24.41 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=15.6
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCC
Q 040261 24 FGCLAKNKHYDTVLSLFKRLNSIGLF 49 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 49 (343)
+...++.|+.+.+..+++.+.+.|..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 44455667777776666655554433
No 291
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=59.80 E-value=37 Score=22.89 Aligned_cols=34 Identities=12% Similarity=0.014 Sum_probs=16.1
Q ss_pred cchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC
Q 040261 68 VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101 (343)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (343)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4445555555554444444444444444444444
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=57.40 E-value=14 Score=27.57 Aligned_cols=57 Identities=12% Similarity=-0.054 Sum_probs=35.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHH-------HHHHHHHHH--hcCCcchHHHHHHHHH
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYT-------YNILINCFC--KMGRVSPGFVVLGRIL 79 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~~ 79 (343)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34556688999988888887776665554332 233443332 5677777766666543
No 293
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=57.18 E-value=42 Score=22.75 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=40.5
Q ss_pred HHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcH
Q 040261 41 KRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRI 103 (343)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (343)
+.+.+.|+.++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345667765443 33445566666667788888888888777666777766677777777643
No 294
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=56.86 E-value=87 Score=26.22 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHH
Q 040261 89 TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYST 168 (343)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (343)
.|..-...+...|++++|.++.-.... |+-.+..|.+.+-..-...|+..-.+.+|..+.+.+ ..+..--.-
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-------~Ln~~ESlE 434 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-------QLNKYESLE 434 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-------CCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-------ccchHHhhH
Confidence 344444555555666666655544332 233355555544444444455555555555555554 223333333
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 040261 169 ITDGLCKEGFVDKAKELFLK 188 (343)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~ 188 (343)
+++.-...|+.+-...++.+
T Consensus 435 l~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 435 LCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HhHHHHhccHHHHHHHHHhc
Confidence 44444455555555555544
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=56.81 E-value=42 Score=22.59 Aligned_cols=60 Identities=5% Similarity=-0.053 Sum_probs=35.7
Q ss_pred HhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCc
Q 040261 42 RLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESR 102 (343)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (343)
.+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345566555443 233444455556666777777777766655566666666666666654
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.44 E-value=64 Score=24.56 Aligned_cols=224 Identities=11% Similarity=0.050 Sum_probs=106.6
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC
Q 040261 5 DYMLRMHPSPPPVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT 84 (343)
Q Consensus 5 ~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 84 (343)
+.+...++...+..-.+ .+...+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+ +.+.+.|..
T Consensus 17 ~lL~~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~ 87 (285)
T 3kea_A 17 SFLSSKDTFKADVHGHS-ASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIV----KILLFSGLD 87 (285)
T ss_dssp HHHHSTTTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCC
T ss_pred HHHHhCCCCccCCCCCC-HHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCC
Confidence 33444444333333333 34455667887665555543 4333322122344455667776544 444455554
Q ss_pred ccHH---HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 040261 85 PDAV---TFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVF---TYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 158 (343)
Q Consensus 85 ~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 158 (343)
++.. -++ .+...+..|+.+-+.-+++. |..++.. -+...+...+..|+.+-+. .+.+.+..
T Consensus 88 ~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~---- 154 (285)
T 3kea_A 88 DSQFDDKGNT-ALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPS---- 154 (285)
T ss_dssp TTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCT----
T ss_pred CCCcCCCCCc-HHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCc----
Confidence 4321 122 33334566776555444443 4333322 1123444455667765444 44444421
Q ss_pred ccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHH
Q 040261 159 CKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNV 238 (343)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 238 (343)
..+...-.+.+...+..|+.+-+.-+++.-..-+.. +....+..+...+..|+. ++.+.+.+.|..++....
T Consensus 155 -~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-- 226 (285)
T 3kea_A 155 -TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-- 226 (285)
T ss_dssp -TCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG--
T ss_pred -cccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh--
Confidence 122213344555666788888777777654332211 222222222333345553 455566677777765542
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 040261 239 IMNELCKNGKMDEASRLLELMIQ 261 (343)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~ 261 (343)
.-...|+.+-+.-+++.-.+
T Consensus 227 ---~a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 227 ---ENVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp ---GGGTTTCHHHHHHHHHHHHH
T ss_pred ---hhhhcCCHHHHHHHHHcCCC
Confidence 12446666665555554443
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.04 E-value=1.3e+02 Score=28.18 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCC
Q 040261 234 VTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA----SVYNTLMDGFCLTG 282 (343)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 282 (343)
.-|..++..+.+.+.++.+..+-+.+++.--+-|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36788999999999999999999998875322232 35667777665543
No 298
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=54.94 E-value=1.1e+02 Score=26.82 Aligned_cols=177 Identities=11% Similarity=-0.005 Sum_probs=84.7
Q ss_pred ChHHHHHHHHHHHccCCCCCccccCCc--chHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcH
Q 040261 137 HTIVALNLFEEMANGNGEFGVVCKPDA--ITYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYANDW 214 (343)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 214 (343)
+.+.|...+........ ..+.. .....+.......+...++...+....... .+.....-.+....+.|++
T Consensus 229 d~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-----LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHhhhhccC-----CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCH
Confidence 56677777766654321 11111 112222222333342444555555443322 2333333344444566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc------------CCCC-------C-----HH-
Q 040261 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQI------------GVRP-------D-----AS- 269 (343)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~-------~-----~~- 269 (343)
+.|...|..|.... .......--+.+++...|+.++|..+|+.+.+. |.++ + ..
T Consensus 302 ~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~ 380 (618)
T 1qsa_A 302 RGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALT 380 (618)
T ss_dssp HHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHH
T ss_pred HHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhc
Confidence 77777777665421 112333334556666777777777777665431 2110 0 00
Q ss_pred --HHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 040261 270 --VYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALS 324 (343)
Q Consensus 270 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 324 (343)
.-..-+..+...|....|...|..+.+. .+......+.......|.++.++.
T Consensus 381 ~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 381 QGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp HSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHH
Confidence 0112234566778888888888777654 222222333333444555554443
No 299
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=54.81 E-value=24 Score=24.89 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=6.5
Q ss_pred HHHHHHHHHcCCCC
Q 040261 218 KCLFIEMMDQGVQP 231 (343)
Q Consensus 218 ~~~~~~~~~~~~~~ 231 (343)
.++++.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 34444445554443
No 300
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.40 E-value=51 Score=22.81 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=25.1
Q ss_pred CchHHHHHHHHHHHhCCCCc--cHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHh
Q 040261 282 GRVNRAKELFVSMESNGCMR--DVFSYGILIN-G-----YCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 331 (343)
|++-+|-++|+.+-.....+ ....|..||+ . ..+.|+...|..++++...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56666666665554432233 3344444444 1 2345566666666655543
No 301
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=53.86 E-value=52 Score=23.16 Aligned_cols=83 Identities=13% Similarity=0.038 Sum_probs=49.8
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC--------------
Q 040261 132 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKDENINPD-------------- 197 (343)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 197 (343)
+.-.|++..++-++.... ..+..-|.. -+|-+..++..|+..++.+....+..|
T Consensus 43 LyyngEY~R~Lf~L~~lN----------T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~ 110 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLN----------TCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDP 110 (242)
T ss_dssp HHHTTCHHHHHHHHHTCC----------BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCT
T ss_pred hhhcchHhHHHHHHHhcc----------hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeecc
Confidence 445788888876654321 111222222 356788999999999999986544322
Q ss_pred ---hhhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 040261 198 ---VVTYTSLIRGFCYANDWNEAKCLFIEMMD 226 (343)
Q Consensus 198 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (343)
...++.+...+.+.|+.++|+..+..--.
T Consensus 111 ~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 111 GDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp TCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 12245555666666777777666654433
No 302
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=53.75 E-value=62 Score=23.63 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCCCCH--HHH-----HHHHHHHHhCCChhHHHHHHHHHHHc
Q 040261 214 WNEAKCLFIEMMDQGVQPNV--VTF-----NVIMNELCKNGKMDEASRLLELMIQI 262 (343)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~--~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (343)
.+.|+.+|+.+.+...-++. ... ...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 56777777777665311111 111 12234566677777777777766543
No 303
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=53.70 E-value=50 Score=22.77 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=49.1
Q ss_pred hhHHHHHHHH-hHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHc--CCCccHHHHHHHHHHHhhcCcH
Q 040261 33 YDTVLSLFKR-LNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRS--CFTPDAVTFTSLIKGLCAESRI 103 (343)
Q Consensus 33 ~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 103 (343)
.+.+.+-+.+ +.+.|+..+. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+.+.|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444544444 4567777654 3455667777777888999999999887 6667777777778888887754
No 304
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=53.12 E-value=47 Score=22.02 Aligned_cols=57 Identities=12% Similarity=0.027 Sum_probs=25.9
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcC
Q 040261 44 NSIGLFPDLYTYNILINCFCKMG-RVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAES 101 (343)
Q Consensus 44 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (343)
.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|
T Consensus 10 ~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 10 RKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444332 222333333333 44555666666555544444444444455555444
No 305
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=52.41 E-value=55 Score=22.63 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=26.3
Q ss_pred CChHHHHHHHHHhhhCCCCC--ChhhHHHHHH-H-----HhccCcHHHHHHHHHHHHH
Q 040261 177 GFVDKAKELFLKMKDENINP--DVVTYTSLIR-G-----FCYANDWNEAKCLFIEMMD 226 (343)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 226 (343)
|++-+|-++++.+-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666665543333 3344444444 1 2335566666666655544
No 306
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=51.26 E-value=61 Score=22.82 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=34.1
Q ss_pred HHHHHHH-HHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC
Q 040261 20 FNILFGC-LAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFT 84 (343)
Q Consensus 20 ~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 84 (343)
|..|+.. +.-.|.+.+++-++..+ + .-...|-.. -++-+..++..|+..++.++...+.
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~l---N--T~Ts~YYk~-LCy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHKL---N--TCTSKYYES-LCYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTC---C--BHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred HHhhhhhhhhhcchHhHHHHHHHhc---c--hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444433 33567777776665332 1 111222222 2566788999999999999865443
No 307
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=50.53 E-value=55 Score=22.04 Aligned_cols=57 Identities=7% Similarity=0.038 Sum_probs=28.6
Q ss_pred HHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 040261 79 LRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGH 137 (343)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (343)
.+.|..++..= ..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 11 ~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 11 RQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34444443321 22333333334 44566666666666555555555555555555554
No 308
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=50.26 E-value=18 Score=19.95 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 040261 70 PGFVVLGRILRSCFTPDAVTFTSLIKGL 97 (343)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (343)
+|.+.|.+|++..-.++..+|...++..
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 3444444444332222333444444443
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.80 E-value=57 Score=22.85 Aligned_cols=81 Identities=11% Similarity=-0.010 Sum_probs=36.1
Q ss_pred HHHHHhcCChhHHHHHHHHhH-hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHH--HHHHHHHHhhc
Q 040261 24 FGCLAKNKHYDTVLSLFKRLN-SIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVT--FTSLIKGLCAE 100 (343)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 100 (343)
+...+..|+.+....++..-. ... ..+..-++.+ ...+..|+. ++++.+.+.|..++... -...+...+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L-~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVD-EVDTEGNTPL-NIAVHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTT-CCCTTSCCHH-HHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCC-CCCCCCCCHH-HHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 334456778777777664322 111 1122222233 333455664 34455555554443221 11223333455
Q ss_pred CcHHHHHHHH
Q 040261 101 SRIMEAAALF 110 (343)
Q Consensus 101 ~~~~~a~~~~ 110 (343)
|+.+-+..++
T Consensus 83 ~~~~~~~~Ll 92 (201)
T 3hra_A 83 GRTEILAYML 92 (201)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6665554444
No 310
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.68 E-value=61 Score=22.35 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=48.1
Q ss_pred hHHHHHHH-HHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCChHH
Q 040261 70 PGFVVLGR-ILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAF--GCKPDVFTYTTLINGLCRTGHTIV 140 (343)
Q Consensus 70 ~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 140 (343)
.+.+-+.+ +.+.|...+.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-..+
T Consensus 15 ~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 33433333 44567775543 345667777777788899999999887 777777777777888888886543
No 311
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.99 E-value=76 Score=23.22 Aligned_cols=22 Identities=9% Similarity=-0.037 Sum_probs=13.4
Q ss_pred HHHhhcCcHHHHHHHHHHHHhc
Q 040261 95 KGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
..|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3456666666666666666554
No 312
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.49 E-value=1e+02 Score=24.49 Aligned_cols=66 Identities=6% Similarity=0.005 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc-CcHHHHHHHHHHHHHcCCCCC
Q 040261 166 YSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYA-NDWNEAKCLFIEMMDQGVQPN 232 (343)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 232 (343)
...++.-|...|+.++|.+.++++...... .......+..+.-+. ...+.+..++..+.+.++-+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 456788888899999999999888532111 112222223333222 123456667777776664433
No 313
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=47.37 E-value=47 Score=21.85 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCC
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 67 (343)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444445555566666666554433444444444445555443
No 314
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=46.88 E-value=42 Score=22.39 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCC
Q 040261 21 NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGR 67 (343)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 67 (343)
..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 33445555555555666666666555444445544444555555544
No 315
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.62 E-value=72 Score=23.01 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=9.4
Q ss_pred HHHHhcCChhHHHHHHH
Q 040261 25 GCLAKNKHYDTVLSLFK 41 (343)
Q Consensus 25 ~~~~~~~~~~~a~~~~~ 41 (343)
...++.|+.+....+++
T Consensus 14 ~~A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 14 VKATQYGIYERCRELVE 30 (240)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHH
Confidence 34456777655555443
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.50 E-value=64 Score=21.67 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=38.8
Q ss_pred HHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 040261 77 RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139 (343)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (343)
.+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-..
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345566654443 23345555555566677888888877766667777666777777776543
No 317
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.23 E-value=48 Score=24.02 Aligned_cols=17 Identities=12% Similarity=-0.103 Sum_probs=7.6
Q ss_pred HHHhCCChhHHHHHHHH
Q 040261 242 ELCKNGKMDEASRLLEL 258 (343)
Q Consensus 242 ~~~~~~~~~~a~~~~~~ 258 (343)
...+.|+.+-+..+++.
T Consensus 216 ~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHh
Confidence 33445555444444433
No 318
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=45.91 E-value=67 Score=21.74 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=30.6
Q ss_pred HHHcCCCccHHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 040261 78 ILRSCFTPDAVTFTSLIKGLCAES-RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138 (343)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (343)
+.+.|..++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-.
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 344454433322 23344444443 4455666666666665555555555555566655543
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=45.67 E-value=63 Score=21.37 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHcCCCccHHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 040261 78 ILRSCFTPDAVTFTSLIKGLCAES-RIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHT 138 (343)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (343)
+.+.|..++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-.
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 344555544332 23444444444 4556777777776666556666665666666666544
No 320
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.64 E-value=83 Score=22.70 Aligned_cols=84 Identities=12% Similarity=0.157 Sum_probs=47.9
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 040261 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND-----WNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK 248 (343)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (343)
.+..+++.|+-++-+|.+.| .|....-..++.+.-..|. ...|...++.....|.+--.......+..++..-.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPK 103 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPK 103 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCC
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc
Confidence 35678888888888888888 6655555555555544443 33455556666666755444444444444444444
Q ss_pred hhHHHHHHHH
Q 040261 249 MDEASRLLEL 258 (343)
Q Consensus 249 ~~~a~~~~~~ 258 (343)
...+...++.
T Consensus 104 SNs~y~A~~~ 113 (204)
T 2r9g_A 104 SNSAYMALDA 113 (204)
T ss_dssp CCHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4444444433
No 321
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=45.32 E-value=60 Score=21.64 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=17.8
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 040261 95 KGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTG 136 (343)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (343)
..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333333333444444444444444444444444444444444
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.29 E-value=2e+02 Score=26.82 Aligned_cols=90 Identities=17% Similarity=0.081 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCc---------------
Q 040261 21 NILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTP--------------- 85 (343)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------- 85 (343)
..++..+...|.++-|.++...+ +.+...--.+.+++...|++++|.+.|+++.. |+..
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll 887 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 887 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhcc
Confidence 33666677777777666544333 23444445577888899999999999987532 2110
Q ss_pred --------cHHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 040261 86 --------DAVTFTSLIKGLCAESRIMEAAALFTKLRAF 116 (343)
Q Consensus 86 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (343)
....|..++..+-+.+.++.+.++.+..++.
T Consensus 888 ~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 888 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1124556666666666666666666665543
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=44.15 E-value=65 Score=21.12 Aligned_cols=39 Identities=5% Similarity=0.027 Sum_probs=16.4
Q ss_pred HHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhc
Q 040261 62 FCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAE 100 (343)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (343)
+...+..-.|.++++.+.+.+...+..|....++.+...
T Consensus 20 l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 20 LETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 333344444555555554443333333333333333333
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=43.27 E-value=57 Score=20.13 Aligned_cols=63 Identities=16% Similarity=0.010 Sum_probs=33.7
Q ss_pred HHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHH
Q 040261 38 SLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEA 106 (343)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (343)
.+++.+.+.|+- +......+-. .....+.++|.++++.+.+.|. ..|..++.++...|+..-|
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHH
Confidence 356666666643 3333332221 0011456777777777776542 3566777777665654444
No 325
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.27 E-value=1.8e+02 Score=25.82 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhH
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLN 44 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 44 (343)
.| .++-.|.++|++++|.++.++..
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTG
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhh
Confidence 45 35677789999999999887664
No 326
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=42.38 E-value=46 Score=18.82 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHH
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFC 63 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 63 (343)
++.++..+++..-.++++-.+.++.+.| ..+...|..-.+.++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4445555555555555555555555554 334444444444433
No 327
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=42.16 E-value=1.5e+02 Score=24.66 Aligned_cols=55 Identities=16% Similarity=0.051 Sum_probs=37.4
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHhCCC
Q 040261 245 KNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR-----VNRAKELFVSMESNGC 299 (343)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 299 (343)
+..+.+.|+.++.+|.+.|..|....-..+..+.-.-|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 457889999999999999876665555555556555554 3355566666666663
No 328
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=42.04 E-value=94 Score=22.35 Aligned_cols=55 Identities=13% Similarity=0.016 Sum_probs=33.6
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc-----HHHHHHHHHHHHHcC
Q 040261 174 CKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND-----WNEAKCLFIEMMDQG 228 (343)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 228 (343)
.+..+++.|+-++-+|.+.|-.|....-..++.+.-..|. ...|...++.....|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 3467888888888888888766655544555544443332 344555555555555
No 329
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.90 E-value=48 Score=24.62 Aligned_cols=56 Identities=16% Similarity=-0.025 Sum_probs=33.6
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCccHHH-------HHHHHHHHh--hcCcHHHHHHHHHHHH
Q 040261 59 INCFCKMGRVSPGFVVLGRILRSCFTPDAVT-------FTSLIKGLC--AESRIMEAAALFTKLR 114 (343)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~~ 114 (343)
+...++.|+.+....+++.+.+.+..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3345677888888888887777665544322 233333332 5677776666666543
No 330
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.09 E-value=1e+02 Score=22.24 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=9.6
Q ss_pred hhcCcHHHHHHHHHHHHhcC
Q 040261 98 CAESRIMEAAALFTKLRAFG 117 (343)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~ 117 (343)
+..|+.+.+..+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455555555554444443
No 331
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.81 E-value=1.6e+02 Score=24.43 Aligned_cols=46 Identities=20% Similarity=0.052 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 040261 104 MEAAALFTKLRAF--------GCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANG 151 (343)
Q Consensus 104 ~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (343)
++...+++..... ++..+......++.. ..|+...+..+++.+...
T Consensus 168 edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 168 EDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADM 221 (447)
T ss_dssp HHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 4455555555432 233455555555554 468888888888877654
No 332
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=38.79 E-value=1.5e+02 Score=23.56 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhH
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLN 44 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~ 44 (343)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 5667888889999999999998875
No 333
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=38.66 E-value=1.1e+02 Score=22.23 Aligned_cols=79 Identities=9% Similarity=0.003 Sum_probs=46.1
Q ss_pred HHHHHHH---hcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc-----HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 040261 168 TITDGLC---KEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAND-----WNEAKCLFIEMMDQGVQPNVVTFNVI 239 (343)
Q Consensus 168 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (343)
.+++++. +..+++.|+-++-+|.+.|-.|....-..++.+.-.-|. ...|...++.....|.+--.......
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqa 116 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQA 116 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3445543 467888888888888888866655555555555544443 44566666666666755444444333
Q ss_pred HHHHHhC
Q 040261 240 MNELCKN 246 (343)
Q Consensus 240 ~~~~~~~ 246 (343)
+..++..
T Consensus 117 viyLA~A 123 (213)
T 3ctd_A 117 SLYLAIS 123 (213)
T ss_dssp HHHHHHS
T ss_pred HHHHHcC
Confidence 3333333
No 334
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.22 E-value=93 Score=21.19 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=34.2
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCC
Q 040261 200 TYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK--MDEASRLLELMIQIGVR 265 (343)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 265 (343)
....++.-|...|+.++|...++++..-... ...+...+..++-+.++ .+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3556677777788888888888776321000 12222333334443222 34456666666655543
No 335
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.46 E-value=1.6e+02 Score=23.64 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC--chHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 040261 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTG--RVNRAKELFVSMESNGCMRDVFSYGILING 312 (343)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (343)
....++.-|...++.++|.+.++++....+. ...+...+..++-+.+ ..+...+++..+...|+-+.......+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3567788888999999999999988532111 2334455555555543 345678888888887766555444444444
Q ss_pred HHhcC----ChHHHHHHHHHHH
Q 040261 313 YCKNK----EIEGALSLYSEML 330 (343)
Q Consensus 313 ~~~~~----~~~~a~~~~~~~~ 330 (343)
+.... +...|..++.++.
T Consensus 298 l~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHhccHhhcccccHHHHHHHHH
Confidence 33322 2344544444443
No 336
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.76 E-value=2e+02 Score=24.56 Aligned_cols=66 Identities=11% Similarity=0.049 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCHH--H-HHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 040261 17 VCSFNILFGCLAKNKHYDTVLSLFKRLNSIGL-FPDLY--T-YNILINCFCKMGRVSPGFVVLGRILRSC 82 (343)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (343)
...+|.++..|...+.++.|..+..+..-... .++.. . +..+.+.+.-.+++.+|.+.+....+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 56789999999999999999999998742110 12222 2 2234566777899999999999887653
No 337
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=36.50 E-value=1.5e+02 Score=23.03 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=67.1
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCC---hhhHHHHHHH--HhccCcHHHHHHHHHHHHHcCCCCCH---HHHHHHHHH
Q 040261 171 DGLCKEGFVDKAKELFLKMKDENINPD---VVTYTSLIRG--FCYANDWNEAKCLFIEMMDQGVQPNV---VTFNVIMNE 242 (343)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~ 242 (343)
...+..|+.+-+..++++. |..++ ....+.+..+ ....+..+. +.+.+.+.|..++. .-.+ .+..
T Consensus 173 ~~A~~~g~~~~v~~LL~~~---gad~n~~d~~g~t~l~~~~~~~~~~~~~~---i~~lLl~~gad~n~~d~~g~t-~L~~ 245 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHALLSSDDSDVEA---ITHLLLDHGADVNVRGERGKT-PLIL 245 (337)
T ss_dssp HHHHHHTCHHHHHHHHHHS---CCCTTCCCTTSCCHHHHHHHHSCTTTHHH---HHHHHHHTTCCTTCCCGGGCC-HHHH
T ss_pred HHHHHCCCHHHHHHHHhcc---CCCcCccCCCCCcHHHHHHHHcCcccHHH---HHHHHHHCCCCCCCcCCCCCC-HHHH
Confidence 3345667776665555432 22222 2222222222 223333333 44445666655542 2222 3344
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 040261 243 LCKNGKMDEASRLLELMIQIGVRPD---ASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEI 319 (343)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (343)
.+..|..+.+..+++. .|..++ ..-.+.|. ..++.|+.+ +.+.+.+.|..++..+ . +....+.|+.
T Consensus 246 a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~Ll~~GAd~n~~~--~-L~~A~~~~~~ 314 (337)
T 4g8k_A 246 AVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKK----IAELLCKRGASTDCGD--L-VMTARRNYDH 314 (337)
T ss_dssp HHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHHHHTTSCSSTTCC--H-HHHHHHTTCH
T ss_pred HHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCCCC--H-HHHHHHcCCH
Confidence 5567777665554432 122222 11122333 334556654 4455567777776554 2 3333455664
Q ss_pred HHHHHHHHHHHhCCCCCCc
Q 040261 320 EGALSLYSEMLSKGIRPTV 338 (343)
Q Consensus 320 ~~a~~~~~~~~~~~~~p~~ 338 (343)
+ +.+-+++.|-.||.
T Consensus 315 ~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 315 S----LVKVLLSHGAKEDF 329 (337)
T ss_dssp H----HHHHHHHTTCCC--
T ss_pred H----HHHHHHHCcCCCCC
Confidence 3 45556777766664
No 338
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=36.17 E-value=1.5e+02 Score=25.54 Aligned_cols=70 Identities=11% Similarity=-0.012 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 040261 70 PGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVA 141 (343)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 141 (343)
......+.++.+-+--+..-...++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|.+.|+++.+
T Consensus 499 ~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 499 AKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 33444444444322223444556777777777777777777776655333 33344 445566777776654
No 339
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.86 E-value=66 Score=18.76 Aligned_cols=32 Identities=6% Similarity=-0.058 Sum_probs=13.5
Q ss_pred cchHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 040261 68 VSPGFVVLGRILRSCFTPDAVTFTSLIKGLCA 99 (343)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (343)
.-.+.++++.+.+.+...+..|....+..+.+
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 34445555555444333333333334443333
No 340
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.71 E-value=1e+02 Score=20.85 Aligned_cols=62 Identities=8% Similarity=0.075 Sum_probs=40.5
Q ss_pred HHHHcCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 040261 77 RILRSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRTGHTI 139 (343)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (343)
.+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-..
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345566654433 33455666666667788888888888777777777777777887777543
No 341
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=34.88 E-value=50 Score=21.49 Aligned_cols=49 Identities=6% Similarity=-0.007 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPG 71 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 71 (343)
|.-.|...+..++.+-|.++++...+.| +...|.+.+..|...=+++-+
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvV 83 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 83 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHH
Confidence 3334444445555555555555555433 344455555554444444433
No 342
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.00 E-value=1.1e+02 Score=20.82 Aligned_cols=70 Identities=6% Similarity=0.064 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccC--cHHHHHHHHHHHHHcCCCCCHHH
Q 040261 165 TYSTITDGLCKEGFVDKAKELFLKMKDENINPDVVTYTSLIRGFCYAN--DWNEAKCLFIEMMDQGVQPNVVT 235 (343)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~ 235 (343)
....++.-|...|+.++|.+.++++...... .......+..++-+.+ ..+.+..++..+...++-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4566788899999999999999998532111 1233344444554432 24567777777777665544433
No 343
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.40 E-value=2e+02 Score=23.07 Aligned_cols=62 Identities=3% Similarity=-0.014 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC---HHHHHHHHHHHHhcCC--cchHHHHHHHHHHcCCC
Q 040261 19 SFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPD---LYTYNILINCFCKMGR--VSPGFVVLGRILRSCFT 84 (343)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 84 (343)
....++.-|...|+.++|.+.++++.. |+ ......++......++ .+.+-.++..+...++-
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 456788999999999999999999853 33 1223333333333332 23345556666655443
No 344
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.59 E-value=1.9e+02 Score=22.54 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCCCccHH
Q 040261 236 FNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGR--VNRAKELFVSMESNGCMRDVF 304 (343)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 304 (343)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+....++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 345566666777777777777776421111 12233344444444322 345556666666655444333
No 345
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.44 E-value=1e+02 Score=19.19 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=19.3
Q ss_pred HHHHHHHHhHhCCCCCCHHHHHHHHHHHHhcC
Q 040261 35 TVLSLFKRLNSIGLFPDLYTYNILINCFCKMG 66 (343)
Q Consensus 35 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (343)
.|.++.+++...|+.|+..+...++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 45555566666666666666666666655544
No 346
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.43 E-value=2e+02 Score=22.63 Aligned_cols=218 Identities=11% Similarity=0.021 Sum_probs=99.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH---HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHH
Q 040261 16 PVCSFNILFGCLAKNKHYDTVLSLFKRLNSIGLFPDLY---TYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTS 92 (343)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (343)
+..-++. +...+..|+.+-+..+++ .|..++.. -.+ .+...+..|+.+ +.+.+++.|..++...-..
T Consensus 17 d~~g~t~-L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEK-IHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCT-ALHLACKFGCVD----TAKYLASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHH-HHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCC-HHHHHHHHCCHH----HHHHHHHHCCCCCCBTTBC
T ss_pred CCCCCCH-HHHHHHcCCHHHHHHHHH----cCCCccccCCCCCc-HHHHHHHcCCHH----HHHHHHHCCCCccccCCCC
Confidence 4444444 445557788766555554 44433322 222 333444556654 3444445444433312222
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCCCCH--------------------HHHHHHHHHHHhcC--ChHHHHHHHHHHHc
Q 040261 93 LIKGLCAESRIMEAAALFTKLRAFGCKPDV--------------------FTYTTLINGLCRTG--HTIVALNLFEEMAN 150 (343)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 150 (343)
.+...+..|+.+-+..+++.....|..++. .-.+. +...+..| +.+-+..+++.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~~~v~~Ll~~--- 162 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYLEMIKILVQL--- 162 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGHHHHHHHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchHHHHHHHHHc---
Confidence 344445678877777777765554544333 11222 33344556 55544444443
Q ss_pred cCCCCCccccCCcchHHHHHHHHHhcCChHHHHHHHHHhhh-CCC---CCChhhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 040261 151 GNGEFGVVCKPDAITYSTITDGLCKEGFVDKAKELFLKMKD-ENI---NPDVVTYTSLIRGFCYANDWNEAKCLFIEMMD 226 (343)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (343)
+... ...+..-.+ .+...+..|+.+-+..+++.-.. .+. ..+....+.|. ..+..|+.+ +++.+.+
T Consensus 163 -ga~~---~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~ 232 (364)
T 3ljn_A 163 -GASP---TAKDKADET-PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWED----VAMRFVE 232 (364)
T ss_dssp -TCCT---TCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHH----HHHHHHT
T ss_pred -CCCC---cccCCCCCC-HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHH----HHHHHHH
Confidence 2110 011222222 33344566777766666654322 000 01222223333 334556654 4444555
Q ss_pred cCCCCCHH---HHHHHHHHHHhCCChhHHHHHHHH
Q 040261 227 QGVQPNVV---TFNVIMNELCKNGKMDEASRLLEL 258 (343)
Q Consensus 227 ~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~ 258 (343)
.|..++.. -.+ -+...+..|+.+-+..+++.
T Consensus 233 ~gad~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 233 MGIDVNMEDNEHTV-PLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TTCCTTCCCTTSCC-HHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCC-HHHHHHHhChHHHHHHHHHc
Confidence 56554422 122 23344456777666666554
No 347
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.92 E-value=95 Score=18.79 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=37.6
Q ss_pred HHHHHHHhHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCccHHHHHHHHHHHhhcCcHH
Q 040261 36 VLSLFKRLNSIGLFPDLYTYNILINCFCKMGRVSPGFVVLGRILRSCFTPDAVTFTSLIKGLCAESRIM 104 (343)
Q Consensus 36 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (343)
...+++.+.+.|+- +..-+..+-. .....++|..+++.+...| ...|..++.++.+.+...
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHH
Confidence 44577777776643 3444443332 3566778888888776553 456777777777666543
No 348
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=29.81 E-value=1.1e+02 Score=21.80 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 040261 248 KMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILINGYCKNKEIEGALSLYS 327 (343)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 327 (343)
+......+.+.++.. .-+-.-.-.+|.++.+.|++++|.++...+... +..... ..+.+++.-|--++.
T Consensus 14 ~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl~ 82 (192)
T 1ixm_A 14 DTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFLT 82 (192)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHHH
Confidence 444555555555543 123334456788999999999999999888763 111222 455677666655554
Q ss_pred HH
Q 040261 328 EM 329 (343)
Q Consensus 328 ~~ 329 (343)
+.
T Consensus 83 K~ 84 (192)
T 1ixm_A 83 FN 84 (192)
T ss_dssp GG
T ss_pred HH
Confidence 44
No 349
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=29.03 E-value=1.5e+02 Score=23.23 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCccHHHHHHHHHH----HHhcCChHHHHHHHHH
Q 040261 254 RLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESNGCMRDVFSYGILING----YCKNKEIEGALSLYSE 328 (343)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~ 328 (343)
++++.+.+.|+.|...++.-++..|.+.=.++.+.++|+.+...|...-.....+++.. .....++++....++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
No 350
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.97 E-value=69 Score=20.88 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHH
Q 040261 235 TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKEL 290 (343)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (343)
.|.-.|...+..++.+-|..+++-.++.| +...|.+.+-.|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 45555666666777777777777776655 555666666666666666655543
No 351
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.88 E-value=1.2e+02 Score=19.80 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=14.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHH
Q 040261 201 YTSLIRGFCYANDWNEAKCLFIEM 224 (343)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~ 224 (343)
...++.-|...|+.++|...++++
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 344555566666666666666665
No 352
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=27.54 E-value=1e+02 Score=21.58 Aligned_cols=51 Identities=10% Similarity=0.123 Sum_probs=32.9
Q ss_pred CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040261 84 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRAFGCKPDVFTYTTLINGLCRT 135 (343)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (343)
.|....++.++..++...-.+.++-.+.+....|. .+..+|..-++.+++.
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34555567777777777777777777777777664 3666666656555553
No 353
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.13 E-value=1.8e+02 Score=21.03 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=35.0
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-----hhHHHHHHHHHHHcCCCC
Q 040261 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK-----MDEASRLLELMIQIGVRP 266 (343)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 266 (343)
.+..+.+.|+..+.+|++.| .|....-..++.+....|. ...|...++.....|.+-
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 34577888888888888888 5554444455555555554 233455555556666543
No 354
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=25.92 E-value=1.2e+02 Score=20.97 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhh
Q 040261 166 YSTITDGLCKEGFVDKAKELFLKMKD 191 (343)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (343)
...++.-|...++.++|...++++..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45567778888999999999988764
No 355
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.68 E-value=73 Score=17.51 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=13.3
Q ss_pred CChHHHHHHHHHHHhCC-CCCC
Q 040261 317 KEIEGALSLYSEMLSKG-IRPT 337 (343)
Q Consensus 317 ~~~~~a~~~~~~~~~~~-~~p~ 337 (343)
-+++.|...|.++...| |+|+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 36777777777776554 4443
No 356
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.57 E-value=2e+02 Score=21.06 Aligned_cols=57 Identities=9% Similarity=-0.087 Sum_probs=35.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCH-------HHHHHHHHHHHhc---CCcchHHHHHHHHHH
Q 040261 23 LFGCLAKNKHYDTVLSLFKRLNSIGLFPDL-------YTYNILINCFCKM---GRVSPGFVVLGRILR 80 (343)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 80 (343)
.+...++.|+.+.+..+++.+...|..++. .-.+.+..+ +.. |+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCc
Confidence 355567889998888888877766654443 223334333 444 787777777765443
No 357
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=25.55 E-value=1.1e+02 Score=21.12 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHh
Q 040261 20 FNILFGCLAKNKHYDTVLSLFKRLNS 45 (343)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 45 (343)
...++.-|...++.++|...++++..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45567777788888888888888753
No 358
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.99 E-value=1.4e+02 Score=19.25 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=24.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHhC
Q 040261 255 LLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSMESN 297 (343)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (343)
+|+.+....+.|+...--.-+..+...++++.|..+...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 3445555455444333233333456778888888888777763
No 359
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.56 E-value=1.1e+02 Score=21.46 Aligned_cols=46 Identities=15% Similarity=0.071 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040261 198 VVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELC 244 (343)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (343)
...++.++..++...-.+.++..+.+....| ..+..+|-.-++.++
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~La 156 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELA 156 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3444555555555555555555555555554 334444444444433
No 360
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.50 E-value=1.8e+02 Score=20.93 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=19.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccC
Q 040261 128 LINGLCRTGHTIVALNLFEEMANGN 152 (343)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (343)
.+..|.+.|.+++|.+++++.....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHccchHHHHHHHHHHhcCC
Confidence 4557899999999999999976654
No 361
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.05 E-value=1.9e+02 Score=19.80 Aligned_cols=100 Identities=7% Similarity=-0.037 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHH
Q 040261 213 DWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFV 292 (343)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (343)
..+.+..++..+.+.|.--|...-...+......| .....+-.++.+.|+..+ +....+..+.. ...+.|..+++
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~--~i~~al~~~~~-d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE--ATEKAMREADI-DWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH--HHHHHHHHHCC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH--HHHHHHHHcCH-hHHHHHHHHHH
Confidence 34556667777777775544444445555554433 234566677777776432 22333332221 33444555554
Q ss_pred HHHhCCCCccHHHHHHHHHHHHhcC
Q 040261 293 SMESNGCMRDVFSYGILINGYCKNK 317 (343)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (343)
+-.....+++.....-++..+.+.|
T Consensus 120 kk~~~~~~~~~~~~~K~~~~L~rrG 144 (159)
T 3c1d_A 120 RKYGEPLPTVFSEKVKIQRFLLYRG 144 (159)
T ss_dssp HHHCSSCCCSHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 3322211223334444444444444
No 362
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=22.89 E-value=3.7e+02 Score=23.25 Aligned_cols=68 Identities=6% Similarity=-0.054 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCccccCCcchHHHHHHHHHhcCChHHH
Q 040261 107 AALFTKLRAFGCKPDVFTYTTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDAITYSTITDGLCKEGFVDKA 182 (343)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 182 (343)
....+++..+=+--+..-..-++..|.+.|-.+.|.++++.+-..- ..+...+ ..+..|.|.|+++..
T Consensus 501 r~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~-------l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 501 KMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQM-------LSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH-------HHCccHH-HHHHHHHHcCChhhc
Confidence 3333344433222355566778889999999999999998887764 2333444 556667777776654
No 363
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=22.85 E-value=1.7e+02 Score=19.49 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=10.6
Q ss_pred HHHHHhcCChHHHHHHHH
Q 040261 170 TDGLCKEGFVDKAKELFL 187 (343)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~ 187 (343)
+...++.|+.+....+++
T Consensus 12 l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334456677776666654
No 364
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.78 E-value=2e+02 Score=20.12 Aligned_cols=113 Identities=4% Similarity=-0.016 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 040261 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVRPDASVYNTLMDGFCLTGRVNRAKELFVSM 294 (343)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (343)
+.+..++..+.+.|.--|...-...+......|.+ ....+-.++.+.|+.++ +....+..+......+.|..++++-
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~Kk 126 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAEKL 126 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHHHH
Confidence 45556666666666554444334445544443332 23455566666665432 2222222111111234455555443
Q ss_pred HhC-CCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 040261 295 ESN-GCMRDVFSYGILINGYCKNK-EIEGALSLYSEML 330 (343)
Q Consensus 295 ~~~-~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 330 (343)
... .-.++.....-++..+.+.| .++.+..+++.+.
T Consensus 127 ~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 127 ANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 221 11122333445555555655 4555556666553
No 365
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=22.78 E-value=2.3e+02 Score=20.74 Aligned_cols=50 Identities=6% Similarity=0.031 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 040261 215 NEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGKMDEASRLLELMIQIGVR 265 (343)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 265 (343)
+.+..++..+.+.|.--|..--...+......+.+ ....+-.++.+.|+.
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 34455555555555443333333334333331111 234445555555553
No 366
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=22.70 E-value=1e+02 Score=16.77 Aligned_cols=15 Identities=13% Similarity=0.054 Sum_probs=7.8
Q ss_pred CChhHHHHHHHHhHh
Q 040261 31 KHYDTVLSLFKRLNS 45 (343)
Q Consensus 31 ~~~~~a~~~~~~~~~ 45 (343)
...++|..+-+.+..
T Consensus 20 HcH~EA~tIA~~L~~ 34 (61)
T 3ph0_C 20 HCHQEAASIADWLAQ 34 (61)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHh
Confidence 345555555555544
No 367
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.49 E-value=1e+02 Score=22.28 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=10.4
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 040261 313 YCKNKEIEGALSLYSEMLS 331 (343)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~ 331 (343)
....|+...+.++.+.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445555566666655543
No 368
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=22.20 E-value=71 Score=19.76 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHH
Q 040261 18 CSFNILFGCLAKNKHYDTVLSLFK 41 (343)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~ 41 (343)
..+...+..+...++.+++..+++
T Consensus 34 ~~l~~yL~~lv~~~~lek~~~vlk 57 (97)
T 4fjo_A 34 LQVVRYCTDLIEEKDLEKLDLVIK 57 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCHHHHHHHHH
Confidence 333333444444444444444433
No 369
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.50 E-value=2.4e+02 Score=20.55 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=37.2
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-----hhHHHHHHHHHHHcCCCC
Q 040261 209 CYANDWNEAKCLFIEMMDQGVQPNVVTFNVIMNELCKNGK-----MDEASRLLELMIQIGVRP 266 (343)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 266 (343)
.+..+.+.|+..+.+|++.|-.|....-..++.+...-|. ...|...++.....|.+-
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTT
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3557888888888999888866655544555555555553 334555666666667543
No 370
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.17 E-value=1.2e+02 Score=16.73 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=10.9
Q ss_pred cCcHHHHHHHHHHHHhcCCCC
Q 040261 100 ESRIMEAAALFTKLRAFGCKP 120 (343)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~ 120 (343)
.|+.+.|+..+-.|...+..|
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSC
T ss_pred CCCHHHHHHHHHcCcCCCCCC
Confidence 455666665555554443333
No 371
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.11 E-value=1.6e+02 Score=18.05 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHH
Q 040261 271 YNTLMDGFCLTGRVNRAKELFVS 293 (343)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~ 293 (343)
+......+.+.|++++|++..+.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 33444555566666666555443
No 372
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.09 E-value=2.4e+02 Score=20.07 Aligned_cols=149 Identities=11% Similarity=-0.054 Sum_probs=73.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC----CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCHH-----------
Q 040261 170 TDGLCKEGFVDKAKELFLKMKDEN----INPDVVTYTSLIRGFCYANDWNEAKCLFIEMMDQGVQPNVV----------- 234 (343)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------- 234 (343)
+...+..|+.+-+..+++.-.... ...+....+.+.. .+..|+.+- ++.+.+.|..++..
T Consensus 41 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~----v~~Ll~~g~~~~~~~~~~~~~~~~~ 115 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI-AVINQNVNL----VRALLARGASVSARATGSVFHYRPH 115 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH-HHHTTCHHH----HHHHHHTTCCTTCCCCSGGGSCCTT
T ss_pred HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH-HHHcCCHHH----HHHHHhCCCCCCcccCCcceeeccc
Confidence 444456678777776666532210 0112223333333 345566554 44444555444331
Q ss_pred -----HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCc-----
Q 040261 235 -----TFNVIMNELCKNGKMDEASRLLELMIQIGVRPDA---SVYNTLMDGFCLTGRVNRAKELFVSMESNGCMR----- 301 (343)
Q Consensus 235 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----- 301 (343)
-.+ .+...+..|+.+-+ +.+.+.|..++. .-. ..+...+..|+.+-+..+++.+.+.|..+
T Consensus 116 ~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~ 189 (232)
T 2rfa_A 116 NLIYYGEH-PLSFAACVGSEEIV----RLLIEHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189 (232)
T ss_dssp CSCCCCSS-HHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCG
T ss_pred ccccCCCC-HHHHHHHcCCHHHH----HHHHHCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhh
Confidence 222 23334455665444 444455544332 112 23445567788888878888888876533
Q ss_pred ----cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040261 302 ----DVFSYGILINGYCKNKEIEGALSLYSEML 330 (343)
Q Consensus 302 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 330 (343)
|..-.+ -+....+.|..+-+..+++.-.
T Consensus 190 ~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 190 ELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp GGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHH
T ss_pred hccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCc
Confidence 222222 3344455677666665555543
No 373
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.02 E-value=1.8e+02 Score=20.97 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHc
Q 040261 57 ILINCFCKMGRVSPGFVVLGRILRS 81 (343)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (343)
..+..|.+.|.+++|.+++++....
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHccchHHHHHHHHHHhcC
Confidence 3455678888888888888886654
Done!