BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040266
         (238 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
           Cryo-Em Map
          Length = 515

 Score = 32.7 bits (73), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 36  VFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSMKFKQV 95
           + +  K  L  +V ++  HRQ+ E+             V  V  + D  RRD   +  +V
Sbjct: 143 LIQTAKTTLGSKV-VNSCHRQMAEI------------AVNAVLTVADMQRRDVDFELIKV 189

Query: 96  KTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCED 129
           +     R E   +I+ + VD+    P  PK  ED
Sbjct: 190 EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVED 223


>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
          Length = 471

 Score = 27.3 bits (59), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 17/66 (25%)

Query: 156 PPPPISWYLRGITAR------------TTEMLIHDLLAESAR-----IRGSFDPGKSLEV 198
           P  P  WYL G+T R            T   ++  +L +        + G++DPG S +V
Sbjct: 9   PKFPQQWYLSGVTQRDLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDV 68

Query: 199 HQESKD 204
           + +  D
Sbjct: 69  NDQDPD 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,259,085
Number of Sequences: 62578
Number of extensions: 285850
Number of successful extensions: 556
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 5
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)