BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040266
(238 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4F9M1|PROA_SACEN Gamma-glutamyl phosphate reductase OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=proA PE=3 SV=1
Length = 445
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 31/179 (17%)
Query: 12 NVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLID----EGHRQVVE--VEQAAL 65
+V V GLP D+V + P + R +++ +++ R L+D G ++ VEQA +
Sbjct: 180 DVVVEHGLPADSVQLL---PCHDR--ASVRYLITARGLVDVVIPRGGAGLISAVVEQATV 234
Query: 66 WKFLWWSGVMLVHVLVDQDRRDHSMKFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPK 125
+GV HV VD + D + + +R C E L V + + F P+
Sbjct: 235 PAI--ETGVGNCHVYVDA-KADVDTALRILLNSKARRVSVCNAAENLLVHQDIAAEFLPR 291
Query: 126 TCEDYHSCTRGKGRIASTVSLEQLIQ---PAIVPPPPISWYLRGITARTTEMLIHDLLA 181
+ HS + EQ+++ P +VP W TE L HD+ A
Sbjct: 292 ALSELHSAG------VTVHGDEQVVEAGGPNVVPATAEDW--------DTEYLSHDIAA 336
>sp|Q5RF02|TCPE_PONAB T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2
SV=1
Length = 541
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 32 DNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSMK 91
D + + K L +V ++ HRQ+ E+ V V + D +RRD +
Sbjct: 161 DTEPLIQTAKTTLGSKV-VNSCHRQMAEI------------AVNAVLTVADMERRDVDFE 207
Query: 92 FKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCED 129
+V+ R E +I+ + VD+ P PK ED
Sbjct: 208 LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPRMPKKVED 245
>sp|Q4R6V2|TCPE_MACFA T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5
PE=2 SV=1
Length = 541
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 32 DNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSMK 91
D + + K L +V ++ HRQ+ E+ V V + D +RRD +
Sbjct: 161 DTEPLIQTAKTTLGSKV-VNSCHRQMAEI------------AVNAVLTVADMERRDVDFE 207
Query: 92 FKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCED 129
+V+ R E +I+ + VD+ P PK ED
Sbjct: 208 LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVED 245
>sp|P48643|TCPE_HUMAN T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1
SV=1
Length = 541
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 32 DNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSMK 91
D + + K L +V ++ HRQ+ E+ V V + D +RRD +
Sbjct: 161 DTEPLIQTAKTTLGSKV-VNSCHRQMAEI------------AVNAVLTVADMERRDVDFE 207
Query: 92 FKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCED 129
+V+ R E +I+ + VD+ P PK ED
Sbjct: 208 LIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVED 245
>sp|P18185|CARY_BACSU Carbamoyl-phosphate synthase arginine-specific large chain
OS=Bacillus subtilis (strain 168) GN=carB PE=3 SV=4
Length = 1030
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 18 GLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQ 56
GL D ++++ PD+RR F + E+LSR V ID+ H +
Sbjct: 414 GLSIDTLWDLAITPDDRRFFV-VMELLSRSVSIDDIHEK 451
>sp|Q9Y2P5|S27A5_HUMAN Bile acyl-CoA synthetase OS=Homo sapiens GN=SLC27A5 PE=1 SV=1
Length = 690
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 70 WWSGVMLVHVLVDQDRRDHSMKFKQVKTGFMKR-FEGCWVIEPLFVDEKLCFPFQPKTCE 128
W H + QD + + FK +KT ++ F V++PLFV + F+P T E
Sbjct: 619 WLPAYATPHFIRIQDAMEVTSTFKLMKTRLVREGFNVGIVVDPLFVLDNRAQSFRPLTAE 678
Query: 129 DYHSCTRGKGRI 140
Y + G R+
Sbjct: 679 MYQAVCEGTWRL 690
>sp|Q9ZPY2|LAC6_ARATH Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1
Length = 569
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 59/160 (36%), Gaps = 20/160 (12%)
Query: 8 LCNLN--VKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAAL 65
LC N V VN P A I D+R V K I + G +Q
Sbjct: 46 LCQTNEIVTVNKKFPGPA---ISAQEDDRIVIKVINMTPYNTTIHWHGIKQK-------- 94
Query: 66 WKFLWWSGVMLVHVLVDQDRRDHSMKFK--QVKTGFMKRFEGCW----VIEPLFVDEKLC 119
+ W+ G + Q + + FK Q K F+ W V PL V K
Sbjct: 95 -RSCWYDGPSYITQCPIQSGQSFTYNFKVAQQKGTFLWHAHFSWLRATVYGPLIVYPKAS 153
Query: 120 FPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPP 159
P+ K + H+ G+ + + V LEQ + + PPPP
Sbjct: 154 VPYPFKKPFNEHTILLGEYWLKNVVELEQHVLESGGPPPP 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,821,281
Number of Sequences: 539616
Number of extensions: 3694855
Number of successful extensions: 7524
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7522
Number of HSP's gapped (non-prelim): 8
length of query: 238
length of database: 191,569,459
effective HSP length: 114
effective length of query: 124
effective length of database: 130,053,235
effective search space: 16126601140
effective search space used: 16126601140
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)