Query 040266
Match_columns 238
No_of_seqs 108 out of 113
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02713 DUF220: Domain of unk 100.0 1.3E-33 2.7E-38 210.3 2.2 73 71-143 1-74 (74)
2 cd08866 SRPBCC_11 Ligand-bindi 99.8 9E-19 1.9E-23 138.5 16.8 142 12-185 2-144 (144)
3 PF03364 Polyketide_cyc: Polyk 99.6 2E-15 4.4E-20 117.7 12.1 130 17-180 1-130 (130)
4 cd07813 COQ10p_like Coenzyme Q 99.6 5.9E-15 1.3E-19 116.9 11.3 136 12-185 2-137 (138)
5 cd07819 SRPBCC_2 Ligand-bindin 99.5 2.2E-12 4.7E-17 100.3 15.8 136 10-183 3-140 (140)
6 PRK10724 hypothetical protein; 99.5 6.9E-13 1.5E-17 111.4 13.9 146 6-189 10-157 (158)
7 cd08861 OtcD1_ARO-CYC_like N-t 99.4 2.7E-12 5.8E-17 101.2 13.8 139 12-185 2-142 (142)
8 cd08865 SRPBCC_10 Ligand-bindi 99.4 8.2E-12 1.8E-16 96.0 14.1 138 12-184 2-139 (140)
9 PF10604 Polyketide_cyc2: Poly 99.4 2E-10 4.3E-15 88.7 18.7 138 9-184 2-139 (139)
10 cd07817 SRPBCC_8 Ligand-bindin 99.3 2.5E-11 5.3E-16 94.5 12.7 136 11-184 2-138 (139)
11 cd05018 CoxG Carbon monoxide d 99.3 7.2E-11 1.6E-15 92.1 14.1 139 10-183 2-143 (144)
12 cd07824 SRPBCC_6 Ligand-bindin 99.3 1.3E-10 2.8E-15 93.6 13.5 140 9-182 1-145 (146)
13 cd07821 PYR_PYL_RCAR_like Pyra 99.3 1.9E-10 4.1E-15 88.6 13.8 136 10-183 2-139 (140)
14 cd07812 SRPBCC START/RHO_alpha 99.1 4.2E-09 9.1E-14 77.8 13.9 139 12-182 2-140 (141)
15 cd08876 START_1 Uncharacterize 99.1 6.5E-09 1.4E-13 87.3 15.4 148 4-183 36-194 (195)
16 cd07818 SRPBCC_1 Ligand-bindin 99.1 3.9E-09 8.4E-14 84.1 13.2 143 9-184 2-149 (150)
17 cd07823 SRPBCC_5 Ligand-bindin 99.0 5.1E-09 1.1E-13 84.3 12.3 138 12-184 2-145 (146)
18 cd08860 TcmN_ARO-CYC_like N-te 99.0 1.6E-08 3.5E-13 83.4 14.6 139 11-185 3-144 (146)
19 cd07820 SRPBCC_3 Ligand-bindin 99.0 1.7E-08 3.6E-13 80.5 13.3 110 12-152 2-111 (137)
20 cd07822 SRPBCC_4 Ligand-bindin 98.9 4.2E-08 9.2E-13 75.6 13.7 137 10-184 1-141 (141)
21 cd08862 SRPBCC_Smu440-like Lig 98.9 5.9E-08 1.3E-12 75.3 13.8 135 10-184 2-137 (138)
22 cd07814 SRPBCC_CalC_Aha1-like 98.9 3.6E-08 7.8E-13 76.4 12.6 131 11-184 2-138 (139)
23 COG2867 Oligoketide cyclase/li 98.5 1.1E-06 2.4E-11 74.2 9.4 143 10-189 3-145 (146)
24 cd07825 SRPBCC_7 Ligand-bindin 98.4 8.1E-06 1.8E-10 64.4 11.8 112 10-153 1-115 (144)
25 cd07816 Bet_v1-like Ligand-bin 98.3 7.4E-05 1.6E-09 61.4 15.7 129 10-175 2-141 (148)
26 COG3427 Carbon monoxide dehydr 98.1 8.3E-05 1.8E-09 62.9 12.0 137 11-184 3-144 (146)
27 PF06240 COXG: Carbon monoxide 98.0 0.00012 2.7E-09 59.3 12.4 130 13-180 1-132 (140)
28 cd08911 START_STARD7-like Lipi 98.0 0.00022 4.7E-09 62.0 14.4 154 3-185 39-206 (207)
29 cd08870 START_STARD2_7-like Li 97.8 0.0022 4.7E-08 55.6 16.8 151 4-184 45-207 (209)
30 cd08899 SRPBCC_CalC_Aha1-like_ 97.7 0.00022 4.7E-09 58.6 9.2 130 5-185 7-137 (157)
31 cd08871 START_STARD10-like Lip 97.7 0.0033 7.3E-08 54.6 16.4 150 3-188 41-205 (222)
32 cd00177 START Lipid-binding ST 97.7 0.0031 6.6E-08 51.4 14.7 142 4-181 34-190 (193)
33 cd08894 SRPBCC_CalC_Aha1-like_ 97.7 0.0015 3.2E-08 52.2 12.5 92 11-112 2-96 (139)
34 cd08893 SRPBCC_CalC_Aha1-like_ 97.6 0.0016 3.5E-08 50.3 11.6 128 11-184 2-135 (136)
35 cd08905 START_STARD1-like Chol 97.5 0.0024 5.3E-08 55.6 12.8 151 4-184 45-207 (209)
36 cd08877 START_2 Uncharacterize 97.5 0.0075 1.6E-07 52.2 15.6 152 4-185 41-214 (215)
37 cd08873 START_STARD14_15-like 97.2 0.0072 1.6E-07 54.6 12.4 124 5-157 73-209 (235)
38 cd08872 START_STARD11-like Cer 97.1 0.015 3.3E-07 51.9 13.9 144 4-183 45-224 (235)
39 cd08868 START_STARD1_3_like Ch 97.0 0.048 1E-06 46.9 15.4 143 9-185 48-207 (208)
40 cd08910 START_STARD2-like Lipi 96.9 0.036 7.8E-07 48.3 13.4 143 3-184 43-205 (207)
41 cd08901 SRPBCC_CalC_Aha1-like_ 96.6 0.022 4.7E-07 45.5 9.2 85 11-112 2-87 (136)
42 cd08898 SRPBCC_CalC_Aha1-like_ 96.5 0.024 5.1E-07 44.4 9.1 28 10-37 2-29 (145)
43 PF01852 START: START domain; 96.5 0.41 8.9E-06 40.0 17.5 143 7-187 44-204 (206)
44 cd08906 START_STARD3-like Chol 96.5 0.17 3.7E-06 44.3 14.8 150 3-184 44-207 (209)
45 cd08874 START_STARD9-like C-te 96.4 0.15 3.3E-06 44.9 14.2 137 10-180 46-200 (205)
46 cd08869 START_RhoGAP C-termina 96.3 0.13 2.8E-06 44.4 13.3 123 7-160 42-175 (197)
47 cd08897 SRPBCC_CalC_Aha1-like_ 96.3 0.07 1.5E-06 42.2 10.8 87 11-112 2-95 (133)
48 cd08913 START_STARD14-like Lip 96.3 0.092 2E-06 47.5 12.5 43 10-54 82-124 (240)
49 smart00234 START in StAR and p 96.3 0.4 8.7E-06 40.3 15.6 149 6-185 42-202 (206)
50 cd08895 SRPBCC_CalC_Aha1-like_ 96.3 0.25 5.5E-06 39.6 13.7 77 11-95 2-88 (146)
51 cd08896 SRPBCC_CalC_Aha1-like_ 96.2 0.083 1.8E-06 42.4 10.9 76 11-94 2-80 (146)
52 PF00407 Bet_v_1: Pathogenesis 96.0 0.42 9E-06 40.0 14.2 89 8-103 3-95 (151)
53 cd07826 SRPBCC_CalC_Aha1-like_ 95.8 0.17 3.7E-06 40.7 10.7 77 11-95 2-81 (142)
54 cd08903 START_STARD5-like Lipi 95.6 1 2.2E-05 39.2 15.7 144 10-184 47-206 (208)
55 cd08892 SRPBCC_Aha1 Putative h 95.5 0.098 2.1E-06 41.4 8.1 27 11-37 2-28 (126)
56 cd08914 START_STARD15-like Lip 95.2 0.23 5.1E-06 45.0 10.6 49 4-54 73-121 (236)
57 PF08327 AHSA1: Activator of H 94.9 0.15 3.4E-06 38.7 7.4 82 18-112 1-85 (124)
58 cd08908 START_STARD12-like C-t 94.7 1.5 3.3E-05 38.7 14.1 141 4-190 47-201 (204)
59 cd08891 SRPBCC_CalC Ligand-bin 94.5 0.58 1.2E-05 37.7 10.1 96 11-112 2-102 (149)
60 PTZ00220 Activator of HSP-90 A 92.5 0.35 7.5E-06 39.0 5.7 21 17-37 1-21 (132)
61 COG5637 Predicted integral mem 92.2 0.28 6E-06 43.7 5.2 90 10-112 71-161 (217)
62 cd08867 START_STARD4_5_6-like 92.0 6.8 0.00015 33.6 13.5 138 9-182 46-204 (206)
63 cd08900 SRPBCC_CalC_Aha1-like_ 90.3 1.4 3E-05 35.1 7.0 27 11-37 2-28 (143)
64 cd08904 START_STARD6-like Lipi 88.9 16 0.00034 32.2 14.8 149 5-182 42-202 (204)
65 COG3832 Uncharacterized conser 88.7 1.2 2.7E-05 36.6 5.8 32 6-37 5-36 (149)
66 KOG3177 Oligoketide cyclase/li 88.1 5.3 0.00012 36.2 9.8 140 16-191 75-216 (227)
67 PLN00188 enhanced disease resi 84.8 18 0.00038 38.1 12.8 136 9-170 227-378 (719)
68 cd08909 START_STARD13-like C-t 80.9 40 0.00087 29.9 15.1 142 4-191 47-203 (205)
69 PF10698 DUF2505: Protein of u 79.6 34 0.00074 28.4 12.9 139 12-184 2-156 (159)
70 PF11485 DUF3211: Protein of u 47.8 57 0.0012 27.6 5.8 60 10-81 2-63 (136)
71 PF11687 DUF3284: Domain of un 46.8 95 0.0021 24.9 6.8 102 11-154 1-104 (120)
72 KOG2936 Uncharacterized conser 44.0 16 0.00035 34.6 2.2 33 5-37 169-201 (301)
73 cd08902 START_STARD4-like Lipi 41.0 2.7E+02 0.0058 25.0 12.5 150 3-182 41-200 (202)
74 KOG2761 START domain-containin 29.2 4.5E+02 0.0097 24.0 12.7 48 3-52 47-95 (219)
75 PF01541 GIY-YIG: GIY-YIG cata 28.8 31 0.00067 24.2 1.1 20 208-227 17-36 (80)
76 PF06865 DUF1255: Protein of u 25.1 2.3E+02 0.0049 22.6 5.5 29 40-68 9-37 (94)
77 COG3345 GalA Alpha-galactosida 25.1 37 0.00079 35.2 1.3 46 60-112 203-250 (687)
78 PF15365 PNRC: Proline-rich nu 22.9 61 0.0013 23.5 1.8 16 149-164 13-28 (58)
79 COG5580 Activator of HSP90 ATP 22.0 98 0.0021 28.7 3.3 85 3-94 144-239 (272)
80 KOG4549 Magnesium-dependent ph 20.6 93 0.002 26.6 2.6 28 97-125 5-32 (144)
No 1
>PF02713 DUF220: Domain of unknown function DUF220; InterPro: IPR003863 This entry consists of several Arabidopsis thaliana hypothetical proteins, none of which have any known function. They contain a conserved region with two cysteine residues.
Probab=99.97 E-value=1.3e-33 Score=210.26 Aligned_cols=73 Identities=49% Similarity=1.040 Sum_probs=71.7
Q ss_pred eeeeEEEEEEEeeecccccceEEeeecCcceeeeeeEEEeeecccc-cccCCCCCCCccccccccCCCceeeee
Q 040266 71 WSGVMLVHVLVDQDRRDHSMKFKQVKTGFMKRFEGCWVIEPLFVDE-KLCFPFQPKTCEDYHSCTRGKGRIAST 143 (238)
Q Consensus 71 fsgt~~v~L~V~Ed~~~~~l~F~l~kgdFmK~FEGsW~VePl~vD~-~~c~~~~P~~~~~y~~c~~g~~rigS~ 143 (238)
|||+++|+|+|+||+.+++++|++.+++|||+|||+|+|||+|||+ |+|++++|+|+|||++||||+|||||+
T Consensus 1 WSG~ipi~livdEnrkdlt~kykk~K~~fMK~FEGswKVeplyvD~erlC~~~~pks~eeY~~CsgG~Gri~Sk 74 (74)
T PF02713_consen 1 WSGTIPIHLIVDENRKDLTAKYKKEKMMFMKVFEGSWKVEPLYVDSERLCKPRKPKSREEYKKCSGGQGRIGSK 74 (74)
T ss_pred CcceeeEEEEEcccchhhHHHHhhhheeeeeeecceeEEEeeEechhhhcCCCCCCCHHHHhhccCCCccccCC
Confidence 7999999999999999999999999999999999999999999997 899999999999999999999999985
No 2
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.82 E-value=9e-19 Score=138.46 Aligned_cols=142 Identities=27% Similarity=0.443 Sum_probs=116.9
Q ss_pred EEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeec-ccccc
Q 040266 12 NVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDR-RDHSM 90 (238)
Q Consensus 12 ~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~-~~~~l 90 (238)
.+++.|++||+.||++|+||+|.+.| +|.+.+++++++.|.. +.+.|.+++.++++..+-.+.+.+.+.. .++.+
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w--~p~v~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i 77 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEF--IPNLAESRLLERNGNR--VVLEQTGKQGILFFKFEARVVLELREREEFPREL 77 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhh--CcCceEEEEEEcCCCE--EEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceE
Confidence 57899999999999999999999988 9999999999887764 3478999999888544555555555544 25789
Q ss_pred eEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHHHH
Q 040266 91 KFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGITAR 170 (238)
Q Consensus 91 ~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It~k 170 (238)
.|.+.+|+| +.|+|+|+++|.. +| -+|.|+|+..+.|....|. +++..++.+
T Consensus 78 ~~~~~~g~~-~~~~g~w~~~~~~---------------------~~---~~t~v~~~~~~~~~~~~p~---~l~~~~~~~ 129 (144)
T cd08866 78 DFEMVEGDF-KRFEGSWRLEPLA---------------------DG---GGTLLTYEVEVKPDFFAPV---FLVEFVLRQ 129 (144)
T ss_pred EEEEcCCch-hceEEEEEEEECC---------------------CC---CeEEEEEEEEEEeCCCCCH---HHHHHHHHH
Confidence 999999887 5799999999973 11 2588999999999975554 678999999
Q ss_pred HHHHHHHHHHHHHHh
Q 040266 171 TTEMLIHDLLAESAR 185 (238)
Q Consensus 171 ~t~~lL~DL~~ea~r 185 (238)
....+|+.|+++|+.
T Consensus 130 ~~~~~l~~lr~~ae~ 144 (144)
T cd08866 130 DLPTNLLAIRAEAES 144 (144)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998863
No 3
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.65 E-value=2e-15 Score=117.65 Aligned_cols=130 Identities=25% Similarity=0.421 Sum_probs=103.8
Q ss_pred eCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccccceEEeee
Q 040266 17 VGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSMKFKQVK 96 (238)
Q Consensus 17 i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~l~F~l~k 96 (238)
|++||+.||+++|||+|.+.| +|.+.+++||+++|++ +.+ .|.+....+.....-.+.+..... +.|.+..
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~--~p~~~~v~vl~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 71 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRF--FPPVKEVRVLERDGDG--MRA----RWEVKFGGIKRSWTSRVTEDPPER-IRFEQIS 71 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHH--CTTEEEEEEEEEECCE--EEE----EEEECTTTTCEEEEEEEEEECTTT-EEEESSE
T ss_pred CCCCHHHHHHHHHHHHHHHHh--CCCCceEEEEEeCCCe--EEE----EEEEecCCEEEEEEEEEEEEEeee-eeeeecC
Confidence 689999999999999999988 9999999999998883 222 677777777777777788888854 9999999
Q ss_pred cCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHHHHHHHHHH
Q 040266 97 TGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGITARTTEMLI 176 (238)
Q Consensus 97 gdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It~k~t~~lL 176 (238)
|+| +.|+|+|+++|.. +..|..++.|+++-.++|.... ++++++.+..+.++.+|
T Consensus 72 g~~-~~~~g~W~~~~~~---------------------~~~~g~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 126 (130)
T PF03364_consen 72 GPF-KSFEGSWRFEPLG---------------------GNEGGTRTRVTYDYEVDPPGPL---PGFLARQFFRRDLRQML 126 (130)
T ss_dssp TTE-EEEEEEEEEEEET---------------------TECCEEEEEEEEEEEEETSSSS---HHHHHHHHHHHHHHHHH
T ss_pred CCc-hhcEEEEEEEECC---------------------CCcCCCEEEEEEEEEEecCcHh---HHHHHHHHHHHHHHHHH
Confidence 998 7899999999983 1011366788888888776544 46679999999999999
Q ss_pred HHHH
Q 040266 177 HDLL 180 (238)
Q Consensus 177 ~DL~ 180 (238)
++|+
T Consensus 127 ~~~~ 130 (130)
T PF03364_consen 127 EAFR 130 (130)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 8874
No 4
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.61 E-value=5.9e-15 Score=116.91 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=106.9
Q ss_pred EEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccccce
Q 040266 12 NVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSMK 91 (238)
Q Consensus 12 ~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~l~ 91 (238)
..++.+++||+.||++++|++|.+.| +|.+.+++++++++.. ..+.+...+.. +..++..++.++ + ...+.
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~--~p~~~~~~vl~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~--~-~~~i~ 72 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEF--LPWCTASRVLERDEDE--LEAELTVGFGG--IRESFTSRVTLV--P-PESIE 72 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhh--cCCccccEEEEcCCCE--EEEEEEEeecc--ccEEEEEEEEec--C-CCEEE
Confidence 35788999999999999999999989 9999999999988864 33445555543 344444444443 3 45789
Q ss_pred EEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHHHHH
Q 040266 92 FKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGITART 171 (238)
Q Consensus 92 F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It~k~ 171 (238)
|.+.+|.| +.++|.|.++|+. + -+|.|||++.+.|... .+.|++..+..+.
T Consensus 73 ~~~~~g~~-~~~~g~w~~~p~~---------------------~----~~T~v~~~~~~~~~~~---l~~~l~~~~~~~~ 123 (138)
T cd07813 73 AELVDGPF-KHLEGEWRFKPLG---------------------E----NACKVEFDLEFEFKSR---LLEALAGLVFDEV 123 (138)
T ss_pred EEecCCCh-hhceeEEEEEECC---------------------C----CCEEEEEEEEEEECCH---HHHHHHHHHHHHH
Confidence 99999987 6799999999983 1 2489999999999853 3467788899999
Q ss_pred HHHHHHHHHHHHHh
Q 040266 172 TEMLIHDLLAESAR 185 (238)
Q Consensus 172 t~~lL~DL~~ea~r 185 (238)
++.+|+++.++|..
T Consensus 124 ~~~~l~~f~~~~~~ 137 (138)
T cd07813 124 AKKMVDAFEKRAKQ 137 (138)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
No 5
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.49 E-value=2.2e-12 Score=100.26 Aligned_cols=136 Identities=15% Similarity=0.232 Sum_probs=98.5
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCC-Cee-EEEEEEeEEEEEeeeeeeEEEEEEEeeeccc
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEG-HRQ-VVEVEQAALWKFLWWSGVMLVHVLVDQDRRD 87 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG-~rq-~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~ 87 (238)
++...+.|++||+.||++|+||+|.+.| +|.+.+.+++..++ ... .+.+ .. .+..+..++.+. +..+. .
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w--~p~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~--~~~~~-~ 73 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEW--SPKVKSVEVLLRDNDGRPEMVRI-GV---GAYGIKDTYALE--YTWDG-A 73 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhh--CcceEEEEEeccCCCCCEEEEEE-EE---eeeeEEEEEEEE--EEEcC-C
Confidence 5778899999999999999999999988 99999999876432 321 1111 12 222334444434 34344 3
Q ss_pred ccceEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHH
Q 040266 88 HSMKFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGI 167 (238)
Q Consensus 88 ~~l~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~I 167 (238)
..+.|+...+.+...++|.|+++|.. + ||.|||+..++|....| +++++.+
T Consensus 74 ~~i~~~~~~~~~~~~~~~~~~~~~~~----------------------~----~t~vt~~~~~~~~~~~~---~~~~~~~ 124 (140)
T cd07819 74 GSVSWTLVEGEGNRSQEGSYTLTPKG----------------------D----GTRVTFDLTVELTVPLP---GFLKRKA 124 (140)
T ss_pred CcEEEEEecccceeEEEEEEEEEECC----------------------C----CEEEEEEEEEEecCCCC---HHHHHHh
Confidence 56999999887445799999999972 2 69999999999987444 5567777
Q ss_pred HHHHHHHHHHHHHHHH
Q 040266 168 TARTTEMLIHDLLAES 183 (238)
Q Consensus 168 t~k~t~~lL~DL~~ea 183 (238)
..+....+++.|.+.|
T Consensus 125 ~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 125 EPLVLDEALKGLKKRV 140 (140)
T ss_pred hhHHHHHHHHhHhhhC
Confidence 7777888888887653
No 6
>PRK10724 hypothetical protein; Provisional
Probab=99.49 E-value=6.9e-13 Score=111.43 Aligned_cols=146 Identities=13% Similarity=0.188 Sum_probs=112.6
Q ss_pred Ccee--EEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEee
Q 040266 6 GSLC--NLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQ 83 (238)
Q Consensus 6 gglc--~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~E 83 (238)
+|-| ++..+..+++||+.+|++++|+++.+.| +|.++.++|++++++.. ..+..- +|.+++.++..+...
T Consensus 10 ~~~~M~~i~~~~~v~~s~~~v~~lv~Dve~yp~f--lp~~~~s~vl~~~~~~~--~a~l~v--~~~g~~~~f~srv~~-- 81 (158)
T PRK10724 10 MEIVMPQISRTALVPYSAEQMYQLVNDVQSYPQF--LPGCTGSRVLESTPGQM--TAAVDV--SKAGISKTFTTRNQL-- 81 (158)
T ss_pred ccCcCCeEEEEEEecCCHHHHHHHHHHHHHHHHh--CcccCeEEEEEecCCEE--EEEEEE--eeCCccEEEEEEEEe--
Confidence 4455 8899999999999999999999999999 99999999999888743 223222 223345555444444
Q ss_pred ecccccceEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHH
Q 040266 84 DRRDHSMKFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWY 163 (238)
Q Consensus 84 d~~~~~l~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~ 163 (238)
+++ +.|.|.+.+|.| +.|+|+|+++|+. + -+|.|+|+-.|+ +.-|.+..+
T Consensus 82 ~~~-~~I~~~~~~GpF-~~l~g~W~f~p~~---------------------~----~~t~V~~~l~fe---f~s~l~~~~ 131 (158)
T PRK10724 82 TSN-QSILMQLVDGPF-KKLIGGWKFTPLS---------------------Q----EACRIEFHLDFE---FTNKLIELA 131 (158)
T ss_pred cCC-CEEEEEecCCCh-hhccceEEEEECC---------------------C----CCEEEEEEEEEE---EchHHHHHH
Confidence 233 489999999999 5799999999983 1 248899999999 444555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCC
Q 040266 164 LRGITARTTEMLIHDLLAESARIRGS 189 (238)
Q Consensus 164 vR~It~k~t~~lL~DL~~ea~rir~~ 189 (238)
+..+...-.+.|+++..++|..+-+.
T Consensus 132 ~~~~~~~~~~~mv~AF~~Ra~~~yg~ 157 (158)
T PRK10724 132 FGRVFKELASNMVQAFTVRAKEVYSA 157 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88888888999999999999887553
No 7
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.45 E-value=2.7e-12 Score=101.20 Aligned_cols=139 Identities=21% Similarity=0.310 Sum_probs=97.7
Q ss_pred EEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccccce
Q 040266 12 NVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSMK 91 (238)
Q Consensus 12 ~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~l~ 91 (238)
.-++.|++||+.||++|+|+++.+.| .|. ....++..+|+...+ ..|..-.-.+..........+.+.+.+.
T Consensus 2 ~~s~~i~ap~~~V~~~l~D~~~~p~~--~p~-~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~i~ 73 (142)
T cd08861 2 EHSVTVAAPAEDVYDLLADAERWPEF--LPT-VHVERLELDGGVERL-----RMWATAFDGSVHTWTSRRVLDPEGRRIV 73 (142)
T ss_pred eEEEEEcCCHHHHHHHHHhHHhhhcc--CCC-ceEEEEEEcCCEEEE-----EEEEEcCCCcEEEEEEEEEEcCCCCEEE
Confidence 35789999999999999999998878 786 555566654442122 2243322112222222223344356799
Q ss_pred EEeee--cCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHHH
Q 040266 92 FKQVK--TGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGITA 169 (238)
Q Consensus 92 F~l~k--gdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It~ 169 (238)
|.+.. ++| +.++|+|+++|.. + -+|.|||++.+.|.... |-....++..+.
T Consensus 74 ~~~~~~~~~~-~~~~g~w~~~~~~----------------------~---~~t~Vt~~~~~~~~~~~-~~~~~~~~~~~~ 126 (142)
T cd08861 74 FRQEEPPPPV-ASMSGEWRFEPLG----------------------G---GGTRVTLRHDFTLGIDS-PEAVPWIRRALD 126 (142)
T ss_pred EEEeeCCCCh-hhheeEEEEEECC----------------------C---CcEEEEEEEEEEECCCC-chhHHHHHHHHc
Confidence 99987 555 6799999999972 1 25899999999998432 245668999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 040266 170 RTTEMLIHDLLAESAR 185 (238)
Q Consensus 170 k~t~~lL~DL~~ea~r 185 (238)
+++..+|..|++.+++
T Consensus 127 ~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 127 RNSRAELAALRAAAER 142 (142)
T ss_pred cccHHHHHHHHHHhhC
Confidence 9999999999998874
No 8
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=8.2e-12 Score=96.01 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=100.8
Q ss_pred EEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccccce
Q 040266 12 NVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSMK 91 (238)
Q Consensus 12 ~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~l~ 91 (238)
..++.|++||+.||++|||++|.+.+ .|.+.+..++.+.... +...-.+..-+..+.+.+...+.+..+...+.
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w--~~~~~~~~~~~~~~~~----~g~~~~~~~~~~g~~~~~~~~v~~~~p~~~~~ 75 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEW--DPGVVEVEKITDGPVG----VGTRYHQVRKFLGRRIELTYEITEYEPGRRVV 75 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhh--ccCceEEEEcCCCCCc----CccEEEEEEEecCceEEEEEEEEEecCCcEEE
Confidence 46789999999999999999998877 7777766666432111 01111122222334566677777776777899
Q ss_pred EEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHHHHH
Q 040266 92 FKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGITART 171 (238)
Q Consensus 92 F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It~k~ 171 (238)
|....+.| + +.+.|.++|.. -||.|++++.+++.++ .+.+..++...+.+.
T Consensus 76 ~~~~~~~~-~-~~~~~~~~~~~--------------------------~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~ 126 (140)
T cd08865 76 FRGSSGPF-P-YEDTYTFEPVG--------------------------GGTRVRYTAELEPGGF-ARLLDPLMAPAFRRR 126 (140)
T ss_pred EEecCCCc-c-eEEEEEEEEcC--------------------------CceEEEEEEEEccchh-HHHHHHHHHHHHhhh
Confidence 99876655 3 89999999962 2699999999998543 345677899999999
Q ss_pred HHHHHHHHHHHHH
Q 040266 172 TEMLIHDLLAESA 184 (238)
Q Consensus 172 t~~lL~DL~~ea~ 184 (238)
+...|++|++.++
T Consensus 127 ~~~~l~~lk~~~e 139 (140)
T cd08865 127 ARAALENLKALLE 139 (140)
T ss_pred hHHHHHHHHHHhh
Confidence 9999999998775
No 9
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.36 E-value=2e-10 Score=88.67 Aligned_cols=138 Identities=22% Similarity=0.315 Sum_probs=96.6
Q ss_pred eEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccc
Q 040266 9 CNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDH 88 (238)
Q Consensus 9 c~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~ 88 (238)
.++..++.|++||+.||++|+|+++.+.+ .|.+.+..++..+|+.....+.-.|. +++..++...++ ...
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~d~~~~~~w--~~~~~~~~~~~~~~~~~~~~~~~~g~-------~~~~~~i~~~~~-~~~ 71 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLSDPENWPRW--WPGVKSVELLSGGGPGTERTVRVAGR-------GTVREEITEYDP-EPR 71 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTTTGGGGT--STTEEEEEEEEECSTEEEEEEEECSC-------SEEEEEEEEEET-TTT
T ss_pred EEEEEEEEECCCHHHHHHHHhChhhhhhh--hhceEEEEEccccccceeEEEEeccc-------cceeEEEEEecC-CCc
Confidence 57899999999999999999999998877 78888887777566621111121111 444444444442 257
Q ss_pred cceEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHH
Q 040266 89 SMKFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGIT 168 (238)
Q Consensus 89 ~l~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It 168 (238)
.+.|.....++. .+.|.|+++|.. -||.||++..+.| .++-+....+++...
T Consensus 72 ~~~~~~~~~~~~-~~~~~~~~~~~~--------------------------~gt~v~~~~~~~~-~~~~~~~~~~~~~~~ 123 (139)
T PF10604_consen 72 RITWRFVPSGFT-NGTGRWRFEPVG--------------------------DGTRVTWTVEFEP-GLPGWLAGPLLRPAV 123 (139)
T ss_dssp EEEEEEESSSSC-EEEEEEEEEEET--------------------------TTEEEEEEEEEEE-SCTTSCHHHHHHHHH
T ss_pred EEEEEEEeccee-EEEEEEEEEEcC--------------------------CCEEEEEEEEEEE-eccchhhHHHHHHHH
Confidence 889988645554 589999999972 2388999999999 333333355677777
Q ss_pred HHHHHHHHHHHHHHHH
Q 040266 169 ARTTEMLIHDLLAESA 184 (238)
Q Consensus 169 ~k~t~~lL~DL~~ea~ 184 (238)
.+.++..|+.|++.++
T Consensus 124 ~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 124 KRIVREALENLKRAAE 139 (139)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccC
Confidence 7778888888887764
No 10
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.34 E-value=2.5e-11 Score=94.46 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=101.4
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSM 90 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~l 90 (238)
+..++.|++||+.||++|+|++|.+.| .+.+.+..++...+.+ ..+. .. +.........+.+..+...+
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w--~~~~~~~~~~~~~~~~--~~~~------~~-~g~~~~~~~~v~~~~~~~~i 70 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRF--MSHVESVEQLDDTRSH--WKAK------GP-AGLSVEWDAEITEQVPNERI 70 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHH--hhhhcEEEEcCCCceE--EEEe------cC-CCCcEEEEEEEeccCCCCEE
Confidence 567899999999999999999999988 8888887776542222 2221 11 13334444455565565679
Q ss_pred eEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCC-CchhHHHHHHHH
Q 040266 91 KFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPP-PPISWYLRGITA 169 (238)
Q Consensus 91 ~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~P-ppls~~vR~It~ 169 (238)
.|....|.| .++|.|+++|.. + -+|.|||+..+.|....+ ..+..++..++.
T Consensus 71 ~~~~~~~~~--~~~~~~~f~~~~----------------------~---~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (139)
T cd07817 71 AWRSVEGAD--PNAGSVRFRPAP----------------------G---RGTRVTLTIEYEPPGGAEGAAVAGLLGGEPE 123 (139)
T ss_pred EEEECCCCC--CcceEEEEEECC----------------------C---CCeEEEEEEEEECCcchhhhhHHHHhhhhHH
Confidence 998877765 699999999972 1 358999999999985444 345788999999
Q ss_pred HHHHHHHHHHHHHHH
Q 040266 170 RTTEMLIHDLLAESA 184 (238)
Q Consensus 170 k~t~~lL~DL~~ea~ 184 (238)
+.++..|+.|++.|+
T Consensus 124 ~~~~~~l~~lk~~aE 138 (139)
T cd07817 124 RQLREDLRRFKQLVE 138 (139)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998876
No 11
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.32 E-value=7.2e-11 Score=92.12 Aligned_cols=139 Identities=14% Similarity=0.083 Sum_probs=101.1
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeeccccc
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHS 89 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~ 89 (238)
++..++.+++||+.||++||||+|.+.| +|.+.+..++.+ |.. .+. ..+++..+++++..+..+.|..+...
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w--~p~~~~~~~~~~-~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARC--IPGCESLEKIGP-NEY-EAT----VKLKVGPVKGTFKGKVELSDLDPPES 73 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhh--ccchhhccccCC-CeE-EEE----EEEEEccEEEEEEEEEEEEecCCCcE
Confidence 5678899999999999999999999988 888887776653 332 222 23344455667777888887666556
Q ss_pred ceEEeee---cCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHH
Q 040266 90 MKFKQVK---TGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRG 166 (238)
Q Consensus 90 l~F~l~k---gdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~ 166 (238)
+.+.... +.+. .++|.|.++|.. -||.|||+..+.|...--+.+.+.+..
T Consensus 74 ~~~~~~~~~~~~~~-~~~~~~~l~~~~--------------------------~gT~v~~~~~~~~~g~l~~l~~~~~~~ 126 (144)
T cd05018 74 YTITGEGKGGAGFV-KGTARVTLEPDG--------------------------GGTRLTYTADAQVGGKLAQLGSRLIDG 126 (144)
T ss_pred EEEEEEEcCCCceE-EEEEEEEEEecC--------------------------CcEEEEEEEEEEEccChhhhCHHHHHH
Confidence 6666542 3364 699999999961 358999999999875322334677888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040266 167 ITARTTEMLIHDLLAES 183 (238)
Q Consensus 167 It~k~t~~lL~DL~~ea 183 (238)
...+.+...++.|++.+
T Consensus 127 ~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 127 AARKLINQFFENLASKI 143 (144)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888888888887654
No 12
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=1.3e-10 Score=93.64 Aligned_cols=140 Identities=12% Similarity=0.105 Sum_probs=95.0
Q ss_pred eEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCC-eeEEEEEEeEEEEEeeeeeeEEEEEEEeeeccc
Q 040266 9 CNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH-RQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRD 87 (238)
Q Consensus 9 c~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~-rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~ 87 (238)
|+.+-+..|++||+.||+++|||++.+.| ++.+.+..++...|. ....+. +.....++.+ ++.+...|.|..+.
T Consensus 1 ~~~~~~~~i~ap~e~Vw~~~tD~~~~~~w--~~~v~~~~~~~~~~~~~~g~~~-~~~~~~~~~~--~~~~~~~v~~~~p~ 75 (146)
T cd07824 1 YRFHTVWRIPAPPEAVWDVLVDAESWPDW--WPGVERVVELEPGDEAGIGARR-RYTWRGLLPY--RLRFELRVTRIEPL 75 (146)
T ss_pred CcceEEEEecCCHHHHHHHHhChhhcchh--hhceEEEEEccCCCCCCcceEE-EEEEEecCCc--EEEEEEEEEeecCC
Confidence 34567889999999999999999999988 888888888874232 111111 0111122233 35555566776666
Q ss_pred ccceEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeeccc----CCCCchhHH
Q 040266 88 HSMKFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAI----VPPPPISWY 163 (238)
Q Consensus 88 ~~l~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~----~~Pppls~~ 163 (238)
..+.|. ..|+|. .+|.|+++|. + -||.|||++.+++.. +.-|.+..+
T Consensus 76 ~~~~~~-~~g~~~--~~~~~~~~~~----------------------~----~gt~vt~~~~~~~~~~~~~~l~~l~~~l 126 (146)
T cd07824 76 SLLEVR-ASGDLE--GVGRWTLAPD----------------------G----SGTVVRYDWEVRTTKPWMNLLAPLARPV 126 (146)
T ss_pred cEEEEE-EEEeee--EEEEEEEEEc----------------------C----CCEEEEEEEEEEcCHHHHHhhhHhhhhH
Confidence 788887 477874 4899999995 1 268999999999853 222345666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040266 164 LRGITARTTEMLIHDLLAE 182 (238)
Q Consensus 164 vR~It~k~t~~lL~DL~~e 182 (238)
++....+.+..+++.|++.
T Consensus 127 ~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 127 FRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred HHHhHHHHHHhHHHHHHhh
Confidence 7777777777777777653
No 13
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.27 E-value=1.9e-10 Score=88.61 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=93.5
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecc-cc
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRR-DH 88 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~-~~ 88 (238)
++..+..+++||+.||++|+|+++.+.| .+.+.+.+++...+ ..|....+.+.+...+.-.+.+..+ +.
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w--~~~~~~~~~~~~~~--------~~g~~~~~~~~~g~~~~~~i~~~~~~~~ 71 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKW--HPAVASCELEGGGP--------GVGAVRTVTLKDGGTVRERLLALDDAER 71 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhh--ccCcceEEeecCCC--------CCCeEEEEEeCCCCEEEEEehhcCccCC
Confidence 5778999999999999999999998877 78777777765431 0111111111111223333444333 36
Q ss_pred cceEEeeec-CcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHH
Q 040266 89 SMKFKQVKT-GFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGI 167 (238)
Q Consensus 89 ~l~F~l~kg-dFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~I 167 (238)
.+.|++..+ ..++.+.|.|.++|.. + -+|.|+++..+.|....| .+.++..
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~~~---------------------~----~~t~v~~~~~~~~~~~~~---~~~~~~~ 123 (140)
T cd07821 72 RYSYRIVEGPLPVKNYVATIRVTPEG---------------------D----GGTRVTWTAEFDPPEGLT---DELARAF 123 (140)
T ss_pred EEEEEecCCCCCcccceEEEEEEECC---------------------C----CccEEEEEEEEecCCCcc---hHHHHHH
Confidence 899999876 4456799999999972 1 158999999999986533 3457777
Q ss_pred HHHHHHHHHHHHHHHH
Q 040266 168 TARTTEMLIHDLLAES 183 (238)
Q Consensus 168 t~k~t~~lL~DL~~ea 183 (238)
..+.....|+-|.+.+
T Consensus 124 ~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 124 LTGVYRAGLAALKAAL 139 (140)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7777788888777665
No 14
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.11 E-value=4.2e-09 Score=77.83 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=94.7
Q ss_pred EEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccccce
Q 040266 12 NVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSMK 91 (238)
Q Consensus 12 ~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~l~ 91 (238)
..++.|++||+.||++|+||++.+.| ++.+.+..++.+.+..... .....+. ..+.......|.+..+...+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEW--SPGLERVEVLGGGEGGVGA--RFVGGRK---GGRRLTLTSEVTEVDPPRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhh--CcccceEEEcCCCCcccee--EEEEEec---CCccccceEEEEEecCCCceE
Confidence 46789999999999999999998877 8888877777654442111 1111111 123334444444544445788
Q ss_pred EEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHHHHH
Q 040266 92 FKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGITART 171 (238)
Q Consensus 92 F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It~k~ 171 (238)
|....+++...++|.|.++|.. + -+|.|+++..+.+....+-.+...++++..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~----------------------~---~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (141)
T cd07812 75 FRVTGGGGGVDGTGEWRLEPEG----------------------D---GGTRVTYTVEYDPPGPLLKVFALLLAGALKRE 129 (141)
T ss_pred EEEecCCCCcceeEEEEEEECC----------------------C---CcEEEEEEEEEecCCcchhhhhHHHHHHHHhH
Confidence 8888777755799999999972 1 36899999999998655323345577777777
Q ss_pred HHHHHHHHHHH
Q 040266 172 TEMLIHDLLAE 182 (238)
Q Consensus 172 t~~lL~DL~~e 182 (238)
+..++..++++
T Consensus 130 ~~~~~~~~~~~ 140 (141)
T cd07812 130 LAALLRALKAR 140 (141)
T ss_pred HHHHHHHHHhh
Confidence 77777777643
No 15
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.08 E-value=6.5e-09 Score=87.30 Aligned_cols=148 Identities=18% Similarity=0.281 Sum_probs=100.1
Q ss_pred CCCceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCC-eeEEEEEEeEEEEEeeeeeeEEEEEEEe
Q 040266 4 PKGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH-RQVVEVEQAALWKFLWWSGVMLVHVLVD 82 (238)
Q Consensus 4 ~kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~-rq~V~VeQ~g~w~FL~fsgt~~v~L~V~ 82 (238)
+.+++..+.++..++.+|+.||+++.|+++.+.| +|.+.+.+|+++.|+ ..++...=...|-+ -...|-+...+.
T Consensus 36 ~~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w--~~~~~~~~vie~~~~~~~i~~~~~~~p~pv--s~Rdfv~~~~~~ 111 (195)
T cd08876 36 EGSPLKEFKAVAEVDASIEAFLALLRDTESYPQW--MPNCKESRVLKRTDDNERSVYTVIDLPWPV--KDRDMVLRSTTE 111 (195)
T ss_pred CCCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHH--HhhcceEEEeecCCCCcEEEEEEEeccccc--CCceEEEEEEEE
Confidence 4566789999999999999999999999999988 999999999998777 33332221122211 011121111111
Q ss_pred eecccccceEEeeec--------Cc--ceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeec
Q 040266 83 QDRRDHSMKFKQVKT--------GF--MKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQP 152 (238)
Q Consensus 83 Ed~~~~~l~F~l~kg--------dF--mK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP 152 (238)
.+..++.+.+..... +| .+.+.|.|.++|+. + -+|.|||...+.|
T Consensus 112 ~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~---------------------~----~~t~vt~~~~~dp 166 (195)
T cd08876 112 QDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLG---------------------N----GKTRVTYQAYADP 166 (195)
T ss_pred EcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECC---------------------C----CeEEEEEEEEeCC
Confidence 111112222222111 21 24689999999972 1 2589999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 040266 153 AIVPPPPISWYLRGITARTTEMLIHDLLAES 183 (238)
Q Consensus 153 ~~~~Pppls~~vR~It~k~t~~lL~DL~~ea 183 (238)
....|. |++..++.+++..+|+.|+++|
T Consensus 167 ~g~iP~---~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 167 GGSIPG---WLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred CCCCCH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 987774 5588899999999999999887
No 16
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.07 E-value=3.9e-09 Score=84.10 Aligned_cols=143 Identities=10% Similarity=0.037 Sum_probs=96.0
Q ss_pred eEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEec---CCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeec
Q 040266 9 CNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLID---EGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDR 85 (238)
Q Consensus 9 c~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~---dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~ 85 (238)
.++...+.|++||+.||++++|++|.+.| .|-+.....+.. ++... +-..-.|....-.+ .....+.+..
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W--~p~~~~~~~~~~~~~~~~~~---~G~~~~~~~~~~~~--~~~~~v~~~~ 74 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKNWPEW--SPWEKLDPDMKRTYSGPDSG---VGASYSWEGNDKVG--EGEMEITESV 74 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcccCccc--CchhhcCcceEEEecCCCCC---CCeEEEEecCCccc--ceEEEEEecC
Confidence 46888999999999999999999998888 554443332221 11100 00011222211012 2234555666
Q ss_pred ccccceEEeeecCcce-eeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccC-CCCchhHH
Q 040266 86 RDHSMKFKQVKTGFMK-RFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIV-PPPPISWY 163 (238)
Q Consensus 86 ~~~~l~F~l~kgdFmK-~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~-~Pppls~~ 163 (238)
+...+.|.+..++..+ .+.+.|.++|.. -||.||+...+.+.+. ++..+..+
T Consensus 75 p~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~gT~v~~~~~~~~~~~~~~~~~~~~ 128 (150)
T cd07818 75 PNERIEYELRFIKPFEATNDVEFTLEPVG--------------------------GGTKVTWGMSGELPFPLKLMYLFLD 128 (150)
T ss_pred CCcEEEEEEEecCCccccceEEEEEEEcC--------------------------CceEEEEEEEecCCchHHHHHHHhh
Confidence 6678999998644444 789999999971 2699999999887643 33345778
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040266 164 LRGITARTTEMLIHDLLAESA 184 (238)
Q Consensus 164 vR~It~k~t~~lL~DL~~ea~ 184 (238)
++....+++...|+.|++.++
T Consensus 129 ~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 129 MDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 888999999999999987765
No 17
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.03 E-value=5.1e-09 Score=84.32 Aligned_cols=138 Identities=13% Similarity=0.036 Sum_probs=99.6
Q ss_pred EEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeec-ccccc
Q 040266 12 NVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDR-RDHSM 90 (238)
Q Consensus 12 ~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~-~~~~l 90 (238)
..++.+++||+.||++||||++.... +|.+.+-.++.+ +. ......+++..+++++..++.+.|.. +...+
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~~~~~--~pg~~~~~~~~~--~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIERVAPC--LPGASLTEVEGD--DE----YKGTVKVKLGPISASFKGTARLLEDDEAARRA 73 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHHHHhc--CCCceeccccCC--Ce----EEEEEEEEEccEEEEEEEEEEEEeccCCCcEE
Confidence 46789999999999999999998866 887776655332 21 23344567777888888788888765 55666
Q ss_pred eEEeee-----cCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHH
Q 040266 91 KFKQVK-----TGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLR 165 (238)
Q Consensus 91 ~F~l~k-----gdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR 165 (238)
.+...- ++.+ ..+..|.++|- + -||.|+|+..+......+......++
T Consensus 74 ~~~~~g~~~~~~g~~-~~~~~~~l~~~----------------------~----~gT~v~~~~~~~~~g~l~~l~~~~v~ 126 (146)
T cd07823 74 VLEATGKDARGQGTA-EATVTLRLSPA----------------------G----GGTRVTVDTDLALTGKLAQFGRGGIG 126 (146)
T ss_pred EEEEEEecCCCcceE-EEEEEEEEEec----------------------C----CcEEEEEEEEEEEeeEhHHhChhHHH
Confidence 655332 1354 37889999983 1 25899999999887655555677788
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040266 166 GITARTTEMLIHDLLAESA 184 (238)
Q Consensus 166 ~It~k~t~~lL~DL~~ea~ 184 (238)
...-+.+..+++.|+++++
T Consensus 127 ~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 127 DVAGRLLAQFAANLEARLA 145 (146)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8887778888888877654
No 18
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.00 E-value=1.6e-08 Score=83.41 Aligned_cols=139 Identities=12% Similarity=0.084 Sum_probs=98.2
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEE--EEeEEEEEeeeeeeEEEEEEEeeecccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEV--EQAALWKFLWWSGVMLVHVLVDQDRRDH 88 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~V--eQ~g~w~FL~fsgt~~v~L~V~Ed~~~~ 88 (238)
..-++.|++||+.||++++|.++-+.| .|.+++..+++++|....+++ .... .++..++..+ +..+++..
T Consensus 3 ~~~si~i~a~~~~v~~lvaDv~~~P~~--~~~~~~~~~l~~~~~~~~~r~~i~~~~----~g~~~~w~s~--~~~~~~~~ 74 (146)
T cd08860 3 TDNSIVIDAPLDLVWDMTNDIATWPDL--FSEYAEAEVLEEDGDTVRFRLTMHPDA----NGTVWSWVSE--RTLDPVNR 74 (146)
T ss_pred ceeEEEEcCCHHHHHHHHHhhhhhhhh--ccceEEEEEEEecCCeEEEEEEEEecc----CCEEEEEEEE--EEecCCCc
Confidence 456899999999999999999999988 999999999988776433322 1111 1233333333 22345556
Q ss_pred cceEEeee-cCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHH
Q 040266 89 SMKFKQVK-TGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGI 167 (238)
Q Consensus 89 ~l~F~l~k-gdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~I 167 (238)
++.|.... |.| +..+|.|+++|+. -||.|+|.+.+...... |.....+...
T Consensus 75 ~i~~~~~~~~p~-~~m~~~W~f~~~~--------------------------~gT~V~~~~~~~~~~~~-~~~~~~~~~~ 126 (146)
T cd08860 75 TVRARRVETGPF-AYMNIRWEYTEVP--------------------------EGTRMRWVQDFEMKPGA-PVDDAAMTDR 126 (146)
T ss_pred EEEEEEecCCCc-ceeeeeEEEEECC--------------------------CCEEEEEEEEEEECCCC-ccchHHHHHH
Confidence 68885443 446 5799999999972 24899999998855222 2234458888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 040266 168 TARTTEMLIHDLLAESAR 185 (238)
Q Consensus 168 t~k~t~~lL~DL~~ea~r 185 (238)
+.+.+...|+.|++.|++
T Consensus 127 ~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 127 LNTNTRAQMARIKKKIEA 144 (146)
T ss_pred HhcccHHHHHHHHHHhhh
Confidence 888899999999988876
No 19
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.98 E-value=1.7e-08 Score=80.55 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=82.7
Q ss_pred EEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccccce
Q 040266 12 NVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSMK 91 (238)
Q Consensus 12 ~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~l~ 91 (238)
..++.|++||+.||+.++|++|++.+ .|.+.+-+++..++.. +.+-....|++..+.+.+.-...+.+..+...+.
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~--~p~~~~v~~~~~~~~~--~~~G~~~~~~~~~~~~~~~w~~~it~~~p~~~f~ 77 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERL--TPPWLEFAVLGRTPGL--IYGGARVTYRLRHFGIPQRWTTEITEVEPPRRFV 77 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhc--CCCCCCeEEEecCCCc--ccCCcEEEEEEEecCCceEEEEEEEEEcCCCeEE
Confidence 45788999999999999999999877 8888888887644331 2222344566555554555566566666667889
Q ss_pred EEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeec
Q 040266 92 FKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQP 152 (238)
Q Consensus 92 F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP 152 (238)
+.+.+|.| +.+++.|.++|.. + ||.||++..+.+
T Consensus 78 ~~~~~G~~-~~w~h~~~f~~~~----------------------~----gT~vt~~v~~~~ 111 (137)
T cd07820 78 DEQVSGPF-RSWRHTHRFEAIG----------------------G----GTLMTDRVEYRL 111 (137)
T ss_pred EEeccCCc-hhCEEEEEEEECC----------------------C----ceEEEEEEEEeC
Confidence 99999887 4699999999962 2 689999999998
No 20
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.93 E-value=4.2e-08 Score=75.59 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=93.0
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeE-ecCCCeeEEEEEEeEEEEEeee-eeeEEEEEEEeeeccc
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVL-IDEGHRQVVEVEQAALWKFLWW-SGVMLVHVLVDQDRRD 87 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl-~~dG~rq~V~VeQ~g~w~FL~f-sgt~~v~L~V~Ed~~~ 87 (238)
++..++.|++||+.||+.|+|++|...+ .+.+...... ...|.+ ..|.+-.. .+.+.+...|.+..+.
T Consensus 1 ~v~~~~~i~ap~~~Vw~~~~d~~~~~~w--~~~~~~~~~~~~~~G~~--------~~~~~~~~~~~~~~~~~~v~~~~p~ 70 (141)
T cd07822 1 TISTEIEINAPPEKVWEVLTDFPSYPEW--NPFVRSATGLSLALGAR--------LRFVVKLPGGPPRSFKPRVTEVEPP 70 (141)
T ss_pred CeEEEEEecCCHHHHHHHHhcccccccc--ChhheeEeccccCCCCE--------EEEEEeCCCCCcEEEEEEEEEEcCC
Confidence 4678899999999999999999998766 4544433322 122332 11222111 1335566667777777
Q ss_pred ccceEEeeecC--cceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHH
Q 040266 88 HSMKFKQVKTG--FMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLR 165 (238)
Q Consensus 88 ~~l~F~l~kgd--FmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR 165 (238)
..+.|....++ ++ ...+.|.++|.. + -+|.|++...+... +.+.+.++++
T Consensus 71 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~----~~T~~~~~~~~~g~--~~~~~~~~~~ 122 (141)
T cd07822 71 RRLAWRGGLPFPGLL-DGEHSFELEPLG---------------------D----GGTRFVHRETFSGL--LAPLVLLGLG 122 (141)
T ss_pred CEeEEEecCCCCcEe-eEEEEEEEEEcC---------------------C----CcEEEEEeeEEEEE--EhHHhhhhhH
Confidence 78898877664 33 377899999962 1 25778887766542 3334678899
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040266 166 GITARTTEMLIHDLLAESA 184 (238)
Q Consensus 166 ~It~k~t~~lL~DL~~ea~ 184 (238)
....+....++++|++.|+
T Consensus 123 ~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 123 RDLRAGFEAMNEALKARAE 141 (141)
T ss_pred HHHhHhHHHHHHHHHHhhC
Confidence 9999999999999998764
No 21
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=98.91 E-value=5.9e-08 Score=75.31 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=86.9
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecC-CCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccc
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDE-GHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDH 88 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~d-G~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~ 88 (238)
++..++.|++||+.||+++||++|.+.+ .|.+.+..++.+. |.-...++. ..+...+...|.|..+..
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w--~~~~~~~~~~~~~~~~G~~~~~~---------~~~~~~~~~~i~~~~p~~ 70 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAW--TPSVETVRLEGPPPAVGSSFKMK---------PPGLVRSTFTVTELRPGH 70 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccc--cCcceEEEEecCCCCCCcEEEEe---------cCCCCceEEEEEEecCCC
Confidence 5778899999999999999999998877 7777766665543 111111111 111233444555555555
Q ss_pred cceEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHH
Q 040266 89 SMKFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGIT 168 (238)
Q Consensus 89 ~l~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It 168 (238)
.+.+.... +++ ...+.|.++|.. + -||.++++..+.+.+ ++.....+....
T Consensus 71 ~~~~~~~~-~~~-~~~~~~~~~~~~---------------------~----~~t~l~~~~~~~~~~--~~~~~~~~~~~~ 121 (138)
T cd08862 71 SFTWTGPA-PGI-SAVHRHEFEAKP---------------------D----GGVRVTTSESLSGPL--AFLFGLFVGKKL 121 (138)
T ss_pred EEEEEecC-CCE-EEEEEEEEEEcC---------------------C----CcEEEEEEEEeecch--HHHHHHHHHHHH
Confidence 67776543 344 478899999962 1 268889888776521 111233567777
Q ss_pred HHHHHHHHHHHHHHHH
Q 040266 169 ARTTEMLIHDLLAESA 184 (238)
Q Consensus 169 ~k~t~~lL~DL~~ea~ 184 (238)
.+.+...|+.|++.++
T Consensus 122 ~~~~~~~l~~lk~~~E 137 (138)
T cd08862 122 RALLPEWLEGLKAAAE 137 (138)
T ss_pred HhhHHHHHHHHHHHhc
Confidence 7777888888877654
No 22
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=98.91 E-value=3.6e-08 Score=76.41 Aligned_cols=131 Identities=14% Similarity=0.060 Sum_probs=92.7
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeee---eeEEEEEEEeeeccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWS---GVMLVHVLVDQDRRD 87 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fs---gt~~v~L~V~Ed~~~ 87 (238)
|..++.|.+||+.||++|+||++.+.| .+.+....+....| |++.+.... +.+.++..+.+-.++
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w--~~~~~~~~~~~~~G----------g~~~~~~~~~~g~~~~~~~~i~~~~~~ 69 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQW--FGPTTTAEMDLRVG----------GRWFFFMTGPDGEEGWVSGEVLEVEPP 69 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhh--hCcCCceEEcccCC----------ceEEEEEECCCCCEEeccEEEEEEcCC
Confidence 577899999999999999999998877 55322222222333 334333322 367778888888888
Q ss_pred ccceEEeeecC---cceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHH
Q 040266 88 HSMKFKQVKTG---FMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYL 164 (238)
Q Consensus 88 ~~l~F~l~kgd---FmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~v 164 (238)
..+.|....++ +. ..++.|.++|.. -+|.|++.+...|...+ ..-+
T Consensus 70 ~~i~~~~~~~~~~~~~-~~~~~~~~~~~~--------------------------~~T~v~~~~~~~~~~~~----~~~~ 118 (139)
T cd07814 70 RRLVFTWAFSDETPGP-ETTVTVTLEETG--------------------------GGTRLTLTHSGFPEEDA----EQEA 118 (139)
T ss_pred CeEEEEecccCCCCCC-ceEEEEEEEECC--------------------------CCEEEEEEEEccChHhH----HHHH
Confidence 88999988764 44 589999999972 24889999998886322 3345
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040266 165 RGITARTTEMLIHDLLAESA 184 (238)
Q Consensus 165 R~It~k~t~~lL~DL~~ea~ 184 (238)
..-+.+....+|+.|++.++
T Consensus 119 ~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 119 REGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred HhCHhhHHHHHHHHHHHHhh
Confidence 66666778888888887765
No 23
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.46 E-value=1.1e-06 Score=74.15 Aligned_cols=143 Identities=15% Similarity=0.193 Sum_probs=114.5
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeeccccc
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHS 89 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~ 89 (238)
++.....++-+|+.+|++..|.+.-+.| +|=|..++|++++++. |.-...-.|-+++-+|.++.....+.. .
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~~YP~F--lP~C~~s~v~~~~~~~----l~A~l~V~~k~i~e~F~Trv~~~~~~~--~ 74 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVESYPEF--LPWCSASRVLERNERE----LIAELDVGFKGIRETFTTRVTLKPTAR--S 74 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHHhCchh--ccccccceEeccCcce----eEEEEEEEhhheeeeeeeeeeecCchh--h
Confidence 3556778999999999999999999999 9999999999998885 334444677788889998877655443 7
Q ss_pred ceEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHHH
Q 040266 90 MKFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGITA 169 (238)
Q Consensus 90 l~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It~ 169 (238)
|.-+++.|=| |...|.|+++|+. .-+++|.+.-.++.+-. .+...+--++.
T Consensus 75 I~~~l~~GPF-k~L~~~W~F~pl~-------------------------~~~ckV~f~ldfeF~s~---ll~~~~g~~f~ 125 (146)
T COG2867 75 IDMKLIDGPF-KYLKGGWQFTPLS-------------------------EDACKVEFFLDFEFKSR---LLGALIGPVFK 125 (146)
T ss_pred hhhhhhcCCh-hhhcCceEEEECC-------------------------CCceEEEEEEEeeehhH---HHHHHHHHHHH
Confidence 8888999999 5799999999983 15688899988887632 23445677788
Q ss_pred HHHHHHHHHHHHHHHhhhCC
Q 040266 170 RTTEMLIHDLLAESARIRGS 189 (238)
Q Consensus 170 k~t~~lL~DL~~ea~rir~~ 189 (238)
.-+..|+++-.++|..+-++
T Consensus 126 ~~a~~mv~aF~kRA~~~y~~ 145 (146)
T COG2867 126 RLASKMVEAFEKRAKEVYGL 145 (146)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 88899999999998877554
No 24
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.37 E-value=8.1e-06 Score=64.37 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=66.8
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEe--eeeeeEEEEEEEeeeccc
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFL--WWSGVMLVHVLVDQDRRD 87 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL--~fsgt~~v~L~V~Ed~~~ 87 (238)
|+..++.|.+||+.||++|||+++.+.+ .+....+.+..-++. . ..-+.+.+- ...+.+.+...+.+..+.
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W--~~~~~~~~~~~~~~~---~--~~G~~~~~~~~~~g~~~~~~~~v~~~~p~ 73 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEI--DGSGTVREAIDGPRI---L--AVGDVFRMAMRLDGGPYRITNHVVAFEEN 73 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCcccccee--CCCCccccccCCCcc---C--CCCCEEEEEEEcCCCceEEEEEEEEECCC
Confidence 5788999999999999999999997776 342221111111111 0 011111111 113345555667777777
Q ss_pred ccceEEeee-cCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecc
Q 040266 88 HSMKFKQVK-TGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPA 153 (238)
Q Consensus 88 ~~l~F~l~k-gdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~ 153 (238)
..+.|...- +...-...+.|+++|.- + -+|.||+...+...
T Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~l~~~~---------------------~----g~T~vt~~~~~~g~ 115 (144)
T cd07825 74 RLIAWRPGPAGQEPGGHRWRWELEPIG---------------------P----GRTRVTETYDWSAV 115 (144)
T ss_pred CEEEEEccCCCCCCCceeEEEEEEECC---------------------C----CcEEEEEEEeccCC
Confidence 889998652 22222366788888862 1 24888888876643
No 25
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=98.27 E-value=7.4e-05 Score=61.39 Aligned_cols=129 Identities=12% Similarity=0.151 Sum_probs=81.4
Q ss_pred EEEEEEEeCCChhHHhhhccCCCC--cccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeE---EEEEEEeee
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDN--RRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVM---LVHVLVDQD 84 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn--~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~---~v~L~V~Ed 84 (238)
.+..++.+.+|+|.||+++.|.++ ...+ .|-+.+..+++-+|. .|+-+.+-|.... .++=.+++.
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~--~p~v~~~~~~eG~~~--------~GsvR~~~~~~~~~~~~~kE~l~~~ 71 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKL--PPVIKSVELLEGDGG--------PGSIKLITFGPGGKVKYVKERIDAV 71 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccc--cccccEEEEEecCCC--------CceEEEEEEcCCCcceEEEEEEEEE
Confidence 578899999999999999999995 3444 455666677654433 2222333232211 122223332
Q ss_pred cc-cccceEEeeecCc----ceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeeccc-CCCC
Q 040266 85 RR-DHSMKFKQVKTGF----MKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAI-VPPP 158 (238)
Q Consensus 85 ~~-~~~l~F~l~kgdF----mK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~-~~Pp 158 (238)
.. ++++.|++.+|++ .+.|.++.+|.|.. + -+|.|.+.-.+.|.- .+||
T Consensus 72 D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~---------------------~----~~t~v~Wt~~ye~~~~~~~~ 126 (148)
T cd07816 72 DEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKG---------------------D----GGCVVKWTIEYEKKGDAEPP 126 (148)
T ss_pred cccccEEEEEEEecccccCceEEEEEEEEEEECC---------------------C----CCEEEEEEEEEEECCCCCCC
Confidence 22 5789999999988 46788999999962 1 358889999999874 3344
Q ss_pred chhHHHHHHHHHHHHHH
Q 040266 159 PISWYLRGITARTTEML 175 (238)
Q Consensus 159 pls~~vR~It~k~t~~l 175 (238)
|.. ...+..+.++.+
T Consensus 127 p~~--~~~~~~~~~~~~ 141 (148)
T cd07816 127 EEE--IKAGKEKALKMF 141 (148)
T ss_pred HHH--HHhHHHHHHHHH
Confidence 442 333444444433
No 26
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.06 E-value=8.3e-05 Score=62.92 Aligned_cols=137 Identities=19% Similarity=0.156 Sum_probs=99.1
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEee-eccccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQ-DRRDHS 89 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~E-d~~~~~ 89 (238)
+..++.|++||++||+.|+||+++. +-||-+.| ++.+|+.- +=+..-++=..+++|..++...+ +.+.+.
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe~~a--~ciPG~qs---~e~~g~e~----~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~ 73 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPEQVA--ACIPGVQS---VETNGDEY----TAKVKLKIGPLKGTFSGRVRFVNVDEPPRS 73 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHHHHH--hhcCCcce---eeecCCeE----EEEEEEeecceeEEEEEEEEEccccCCCcE
Confidence 5678999999999999999999977 45887765 36667732 23334555567799999999988 666655
Q ss_pred ceEEeeec----CcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHH
Q 040266 90 MKFKQVKT----GFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLR 165 (238)
Q Consensus 90 l~F~l~kg----dFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR 165 (238)
+.++ .+| +|++ +...=.++|. | -||+|+|.....=....-..-+..++
T Consensus 74 ~~i~-g~G~~~~g~~~-~~~~v~l~~~-----------------------g---~gt~v~w~~~~~~gg~laqlGsr~i~ 125 (146)
T COG3427 74 ITIN-GSGGGAAGFAD-GTVDVQLEPS-----------------------G---EGTRVNWFADANVGGKLAQLGSRLID 125 (146)
T ss_pred EEEE-eecccccceee-eeeEEEEEEc-----------------------C---CCcEEEEEEEccccHHHHHHhHHHHH
Confidence 5544 334 5774 7777777775 2 34888998887765444444578888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040266 166 GITARTTEMLIHDLLAESA 184 (238)
Q Consensus 166 ~It~k~t~~lL~DL~~ea~ 184 (238)
.++-|.+..+++.|..+..
T Consensus 126 ~~~~kli~~~~~~l~~~l~ 144 (146)
T COG3427 126 SVARKLINRFFDCLSSELA 144 (146)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888888876653
No 27
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.04 E-value=0.00012 Score=59.32 Aligned_cols=130 Identities=16% Similarity=0.130 Sum_probs=77.1
Q ss_pred EEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeeccccc--c
Q 040266 13 VKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHS--M 90 (238)
Q Consensus 13 ~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~--l 90 (238)
.+++|++||+.||+.|+||+++. +-||.+.+-..+. ++ . +=...-++-.+++++...+.+.|..+... +
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~~l~--~ciPG~~~~e~~~---~~--~--~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPENLA--RCIPGVESIEKVG---DE--Y--KGKVKVKVGPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HHHHH--HHSTTEEEEEEEC---TE--E--EEEEEEESCCCEEEEEEEEEEEEEETTTEEEE
T ss_pred CcEEecCCHHHHHHHhcCHHHHH--hhCCCcEEeeecC---cE--E--EEEEEEEeccEEEEEEEEEEEEEcCCCcceEe
Confidence 36899999999999999999987 5589888765543 32 1 12233566678889999999988888755 4
Q ss_pred eEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHHHH
Q 040266 91 KFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGITAR 170 (238)
Q Consensus 91 ~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It~k 170 (238)
.++-....- .+.++=.++=... ++ -++.|+|+..+.-.. +|..+.+++...
T Consensus 72 ~~~g~g~~~--~~~~~~~~~~~~~--------------------~~---~~T~v~~~~~~~~~G----~la~~g~~~i~~ 122 (140)
T PF06240_consen 72 EFEGRGRGG--GSSASANITLSLE--------------------DD---GGTRVTWSADVEVGG----PLASLGQRLIES 122 (140)
T ss_dssp EEEEEECTC--CEEEEEEEEEEEC--------------------CC---TCEEEEEEEEEEEEC----HHHHC-HHHHHH
T ss_pred eeeccCCcc--ceEEEEEEEEEcC--------------------CC---CCcEEEEEEEEEEcc----CHHHhhHHHHHH
Confidence 444333221 2222222221100 11 128899999988653 234445555555
Q ss_pred HHHHHHHHHH
Q 040266 171 TTEMLIHDLL 180 (238)
Q Consensus 171 ~t~~lL~DL~ 180 (238)
.++.|+++.-
T Consensus 123 ~~~~l~~~f~ 132 (140)
T PF06240_consen 123 VARRLIEQFF 132 (140)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 28
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=98.03 E-value=0.00022 Score=61.98 Aligned_cols=154 Identities=13% Similarity=0.096 Sum_probs=98.2
Q ss_pred CCCCceeEEEEEEEe-CCChhHHhhhccCCCCcccccccccceeeeeEecCC--CeeEEEEEEeEEEEEeeeeeeEEEEE
Q 040266 3 VPKGSLCNLNVKVNV-GLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEG--HRQVVEVEQAALWKFLWWSGVMLVHV 79 (238)
Q Consensus 3 ~~kgglc~l~~~~~i-~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG--~rq~V~VeQ~g~w~FL~fsgt~~v~L 79 (238)
.+..|+.-+.++..+ ++|++.++++|.|.++...+ .+.+.+.++|+.++ +..++...-..-|-| -...+-++-
T Consensus 39 ~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~W--d~~~~~~~~le~~~~~~~~i~y~~~~~P~P~--s~RD~V~~r 114 (207)
T cd08911 39 HPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKW--DATAVELEVVDEDPETGSEIIYWEMQWPKPF--ANRDYVYVR 114 (207)
T ss_pred cCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHH--HhhheeEEEEEccCCCCCEEEEEEEECCCCC--CCccEEEEE
Confidence 345678888888877 99999999999999998877 78888889998642 323333222222311 111222222
Q ss_pred EEeeeccccc--ceEEee-------ecCcce--eeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeee
Q 040266 80 LVDQDRRDHS--MKFKQV-------KTGFMK--RFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQ 148 (238)
Q Consensus 80 ~V~Ed~~~~~--l~F~l~-------kgdFmK--~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q 148 (238)
....+..++. +..+-+ ..+|.| .|.|.|.|+|.. ..+.-|+.++|..
T Consensus 115 ~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~----------------------~~~~~~~~~~~~~ 172 (207)
T cd08911 115 RYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHK----------------------SFDEPGFEFVLTY 172 (207)
T ss_pred EEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCC----------------------CCCCCCeEEEEEE
Confidence 2222222222 111111 123433 479999999972 1112357788888
Q ss_pred eeecccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 040266 149 LIQPAIVPPPPISWYLRGITARTTEMLIHDLLAESAR 185 (238)
Q Consensus 149 ~vqP~~~~Pppls~~vR~It~k~t~~lL~DL~~ea~r 185 (238)
..-|...-| +|++..++.+.....|+.|++.+..
T Consensus 173 ~~dPgG~IP---~~lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 173 FDNPGVNIP---SYITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred EeCCCCccC---HHHHHHHHHhhccHHHHHHHHHHhc
Confidence 889998777 4779999999999999999987753
No 29
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.81 E-value=0.0022 Score=55.56 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=96.9
Q ss_pred CCCceeEEEEEEEe-CCChhHHhhhccCCCCcccccccccceeeeeEecCCC--eeEEEEEEeEEEEEeeeeeeEEEEEE
Q 040266 4 PKGSLCNLNVKVNV-GLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH--RQVVEVEQAALWKFLWWSGVMLVHVL 80 (238)
Q Consensus 4 ~kgglc~l~~~~~i-~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~--rq~V~VeQ~g~w~FL~fsgt~~v~L~ 80 (238)
+..|+....++..+ ++||+.++++|.|.+....+ +..+.+.++|+.+++ ..++...-..-|=+ -...+-++..
T Consensus 45 ~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~W--d~~~~~~~~le~~~~~~~~i~y~~~~~P~P~--s~RD~V~~r~ 120 (209)
T cd08870 45 KGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKW--DETVIEHETLEEDEKSGTEIVRWVKKFPFPL--SDREYVIARR 120 (209)
T ss_pred CCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhh--hhheeeEEEEEecCCCCcEEEEEEEECCCcC--CCceEEEEEE
Confidence 45778888899999 67999999999999998877 888888999987664 34443333333311 1111222222
Q ss_pred Eeeeccc-ccceEE-----eeec-C--cceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeee
Q 040266 81 VDQDRRD-HSMKFK-----QVKT-G--FMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQ 151 (238)
Q Consensus 81 V~Ed~~~-~~l~F~-----l~kg-d--FmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vq 151 (238)
..++... ..+..+ ...- + .++.|.|.|.|+|+..| + -++.++|.....
T Consensus 121 ~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~-------------------~----~~t~~~~~~~~d 177 (209)
T cd08870 121 LWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGD-------------------G----QGSACEVTYFHN 177 (209)
T ss_pred EEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCC-------------------C----CceEEEEEEEEC
Confidence 2222110 111000 0000 2 34679999999998311 1 346677778888
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040266 152 PAIVPPPPISWYLRGITARTTEMLIHDLLAESA 184 (238)
Q Consensus 152 P~~~~Pppls~~vR~It~k~t~~lL~DL~~ea~ 184 (238)
|...-| +|++..+..+.....|..|++.+.
T Consensus 178 p~G~IP---~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 178 PDGGIP---RELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred CCCCCC---HHHHHHHHHhhhHHHHHHHHHHHh
Confidence 987666 577999999999999999988764
No 30
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.75 E-value=0.00022 Score=58.63 Aligned_cols=130 Identities=12% Similarity=0.041 Sum_probs=84.1
Q ss_pred CCceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeee-eeEEEEEEEee
Q 040266 5 KGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWS-GVMLVHVLVDQ 83 (238)
Q Consensus 5 kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fs-gt~~v~L~V~E 83 (238)
++|...+.++..|.+||+.||++||||++.+.+ .+.. ..-...|. .+.+-+-. +...+...|.+
T Consensus 7 ~~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W--~~~~---~~~~~~G~----------~~~~~~~~~~~~~~~~~v~e 71 (157)
T cd08899 7 LDGGATLRFERLLPAPIEDVWAALTDPERLARW--FAPG---TGDLRVGG----------RVEFVMDDEEGPNATGTILA 71 (157)
T ss_pred cCCCeEEEEEEecCCCHHHHHHHHcCHHHHHhh--cCCC---CCCcccCc----------eEEEEecCCCCCccceEEEE
Confidence 456688999999999999999999999996655 3311 11011222 23222211 23455566667
Q ss_pred ecccccceEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHH
Q 040266 84 DRRDHSMKFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWY 163 (238)
Q Consensus 84 d~~~~~l~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~ 163 (238)
..+...+.|....+++ .....|.+++. + -||.|++.+.+.|.. .
T Consensus 72 ~~p~~~l~~~~~~~~~--~~~~~~~l~~~----------------------~----~gT~v~~~~~~~~~~--------~ 115 (157)
T cd08899 72 CEPPRLLAFTWGEGGG--ESEVRFELAPE----------------------G----DGTRLTLTHRLLDER--------F 115 (157)
T ss_pred EcCCcEEEEEecCCCC--CceEEEEEEEc----------------------C----CCEEEEEEEeccCch--------h
Confidence 6666778888776552 35667888774 1 248899999987654 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 040266 164 LRGITARTTEMLIHDLLAESAR 185 (238)
Q Consensus 164 vR~It~k~t~~lL~DL~~ea~r 185 (238)
.+..+..--...|+.|++.++.
T Consensus 116 ~~~~~~~GW~~~L~~Lk~~~e~ 137 (157)
T cd08899 116 GAGAVGAGWHLCLDVLEAALEG 137 (157)
T ss_pred hhhhhcccHHHHHHHHHHHHcC
Confidence 2344455566778888877763
No 31
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.70 E-value=0.0033 Score=54.59 Aligned_cols=150 Identities=13% Similarity=0.246 Sum_probs=95.5
Q ss_pred CCCCceeEEEEEEEe-CCChhHHhhhccCCCCcccccccccceeeeeEecCC-CeeEEEEEEeEEEE-----Eeeee---
Q 040266 3 VPKGSLCNLNVKVNV-GLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEG-HRQVVEVEQAALWK-----FLWWS--- 72 (238)
Q Consensus 3 ~~kgglc~l~~~~~i-~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG-~rq~V~VeQ~g~w~-----FL~fs--- 72 (238)
.+.+++.-+.++..+ +++|+.++++|.|++....+ .+++...++|+.-+ +..++...-.+-|- |+...
T Consensus 41 ~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~W--d~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~ 118 (222)
T cd08871 41 PENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTW--DSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWL 118 (222)
T ss_pred CCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhh--hhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEE
Confidence 355778888898887 79999999999999887766 77888888885433 23333333223341 11111
Q ss_pred ---eeEEEEEEEeeecccccceEEeeecCcce--eeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeee
Q 040266 73 ---GVMLVHVLVDQDRRDHSMKFKQVKTGFMK--RFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLE 147 (238)
Q Consensus 73 ---gt~~v~L~V~Ed~~~~~l~F~l~kgdFmK--~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~ 147 (238)
+++-+ +...-+.++. . ...++.| .+.|.|.|+|+. . -++.|||-
T Consensus 119 ~~~~~~vi-~~~sv~~~~~----P-~~~g~VR~~~~~~g~~i~p~~---------------------~----~~t~vt~~ 167 (222)
T cd08871 119 EFGGEYII-FNHSVKHKKY----P-PRKGFVRAISLLTGYLIRPTG---------------------P----KGCTLTYV 167 (222)
T ss_pred eCCCEEEE-EeccccCCCC----C-CCCCeEEeEEEccEEEEEECC---------------------C----CCEEEEEE
Confidence 11000 0000111110 0 0123333 357889999972 1 34889999
Q ss_pred eeeecccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 040266 148 QLIQPAIVPPPPISWYLRGITARTTEMLIHDLLAESARIRG 188 (238)
Q Consensus 148 Q~vqP~~~~Pppls~~vR~It~k~t~~lL~DL~~ea~rir~ 188 (238)
..+-|...-|. |++-.+..++...+|++|++.+...+.
T Consensus 168 ~~~Dp~G~IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~ 205 (222)
T cd08871 168 TQNDPKGSLPK---WVVNKATTKLAPKVMKKLHKAALKYPE 205 (222)
T ss_pred EecCCCCCcCH---HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999987774 668888888899999999988887654
No 32
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=97.66 E-value=0.0031 Score=51.37 Aligned_cols=142 Identities=15% Similarity=0.251 Sum_probs=93.3
Q ss_pred CCCceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCC-eeEEEEEEeEEE-----EEeeeeeeEEE
Q 040266 4 PKGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH-RQVVEVEQAALW-----KFLWWSGVMLV 77 (238)
Q Consensus 4 ~kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~-rq~V~VeQ~g~w-----~FL~fsgt~~v 77 (238)
+..++.-+.++..++.+++.|+++|.|+++...+ .+.+.+.++|+..+. ..++...-...| .|+....+...
T Consensus 34 ~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w--~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~ 111 (193)
T cd00177 34 EDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKW--DKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKL 111 (193)
T ss_pred CCCCceeEEEEEEECCCHHHHHHHHhCCchhhch--hhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEc
Confidence 3446788889999999999999999999997767 678888899975544 344544444455 44444322211
Q ss_pred -------EEEEeeecccccceEEeeecCccee--eeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeee
Q 040266 78 -------HVLVDQDRRDHSMKFKQVKTGFMKR--FEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQ 148 (238)
Q Consensus 78 -------~L~V~Ed~~~~~l~F~l~kgdFmK~--FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q 148 (238)
...=.++. .+. ...++.|. +.|.|.++|.. + -++.||+-.
T Consensus 112 ~~~~~~~~~~Si~~~-----~~p-~~~~~vR~~~~~~~~~i~~~~---------------------~----~~~~vt~~~ 160 (193)
T cd00177 112 DDGTYVIVSKSVDHD-----SHP-KEKGYVRAEIKLSGWIIEPLD---------------------P----GKTKVTYVL 160 (193)
T ss_pred CCCeEEEEEeecCCC-----CCC-CCCCcEEEEEEccEEEEEECC---------------------C----CCEEEEEEE
Confidence 11111110 000 01134343 46889999972 1 347889999
Q ss_pred eeecccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 040266 149 LIQPAIVPPPPISWYLRGITARTTEMLIHDLLA 181 (238)
Q Consensus 149 ~vqP~~~~Pppls~~vR~It~k~t~~lL~DL~~ 181 (238)
.+-|....|+ |++..+..++...++++++.
T Consensus 161 ~~D~~g~iP~---~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 161 QVDPKGSIPK---SLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred eeCCCCCccH---HHHHhhhhhccHHHHHHHHH
Confidence 9999987774 45888888888888888774
No 33
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.65 E-value=0.0015 Score=52.23 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=57.1
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeee---eeEEEEEEEeeeccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWS---GVMLVHVLVDQDRRD 87 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fs---gt~~v~L~V~Ed~~~ 87 (238)
|.++..+.+||+.||++||||+.+..+- -|.--..... .+....-|.|.+.+.. ..+.+.-.+.|-.+.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~-~p~~~~~~~~-------~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~ 73 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWW-GPEGFTNTTH-------EFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPP 73 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhcc-CcCCCcceEE-------EEEecCCCEEEEEEECCCCCEecceEEEEEEcCC
Confidence 6788999999999999999999965441 1221111111 1223345556665532 345566677787787
Q ss_pred ccceEEeeecCcceeeeeeEEEeee
Q 040266 88 HSMKFKQVKTGFMKRFEGCWVIEPL 112 (238)
Q Consensus 88 ~~l~F~l~kgdFmK~FEGsW~VePl 112 (238)
..+.|.....+- ...=.|+++|.
T Consensus 74 ~~l~~t~~~~~~--~~~v~~~~~~~ 96 (139)
T cd08894 74 ERIVYDHGSGPP--RFRLTVTFEEQ 96 (139)
T ss_pred CEEEEEeccCCC--cEEEEEEEEEC
Confidence 888887654421 24456777775
No 34
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=97.59 E-value=0.0016 Score=50.31 Aligned_cols=128 Identities=12% Similarity=0.071 Sum_probs=76.0
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeee-eeEEEEEEEeeeccccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWS-GVMLVHVLVDQDRRDHS 89 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fs-gt~~v~L~V~Ed~~~~~ 89 (238)
+..++.|.+||+.||++|||+++.+.+ ..... . ++ .++.-|.|.+..-. +...+...|.+-.+...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W--~~~~~----~--~~-----~~~~G~~~~~~~~~~~~~~~~~~v~~~~~~~~ 68 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQY--WGGTT----V--ES-----DWKVGSAFEYRRGDDGTVDVEGEVLESDPPRR 68 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhhe--ecccc----c--cc-----CCcCCCeEEEEeCCCcccccceEEEEecCCCe
Confidence 567899999999999999999996666 22100 0 01 11222334332211 24455666666556667
Q ss_pred ceEEeeecCc-----ceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHH
Q 040266 90 MKFKQVKTGF-----MKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYL 164 (238)
Q Consensus 90 l~F~l~kgdF-----mK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~v 164 (238)
+.|....++- .-..+.+|.++|. +| |+.|++++..-+. .+ -.
T Consensus 69 l~~~~~~~~~~~~~~~~~~~v~~~l~~~----------------------~~----~t~l~~~~~~~~~----~~---~~ 115 (136)
T cd08893 69 LVHTWRAVWDPEMAAEPPSRVTFEIEPV----------------------GD----VVKLTVTHDGFPP----GS---PT 115 (136)
T ss_pred EEEEEecCCCcccCCCCCEEEEEEEEec----------------------CC----cEEEEEEecCCCC----ch---hH
Confidence 7777653221 1146778888885 12 5888888876432 11 13
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040266 165 RGITARTTEMLIHDLLAESA 184 (238)
Q Consensus 165 R~It~k~t~~lL~DL~~ea~ 184 (238)
+.-+.+-...+|+.|++.++
T Consensus 116 ~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 116 LEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred HHhhhcCHHHHHHHHHHHhc
Confidence 44555566678888877654
No 35
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.51 E-value=0.0024 Score=55.60 Aligned_cols=151 Identities=16% Similarity=0.129 Sum_probs=92.4
Q ss_pred CCCceeEEEEEEEeCCChhHHh-hhccCCCCcccccccccceeeeeEecCCC-eeEEEEEEeEEEE-EeeeeeeEEEEEE
Q 040266 4 PKGSLCNLNVKVNVGLPPDAVY-NIVTDPDNRRVFKNIKEVLSRRVLIDEGH-RQVVEVEQAALWK-FLWWSGVMLVHVL 80 (238)
Q Consensus 4 ~kgglc~l~~~~~i~lpPd~Vw-~vLTDydn~~~F~~I~~v~sskVl~~dG~-rq~V~VeQ~g~w~-FL~fsgt~~v~L~ 80 (238)
|..| .-..++..+++|++.+| .++.|.++...+ ++++.+.++|+.-+. ..++.. ....|- ++.=...|-++..
T Consensus 45 ~~~~-k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W--~~~~~~~~vl~~id~~~~i~y~-~~~p~p~~~vs~RD~V~~~~ 120 (209)
T cd08905 45 PDIG-KVFRLEVVVDQPLDNLYSELVDRMEQMGEW--NPNVKEVKILQRIGKDTLITHE-VAAETAGNVVGPRDFVSVRC 120 (209)
T ss_pred CCCC-cEEEEEEEecCCHHHHHHHHHhchhhhcee--cccchHHHHHhhcCCCceEEEE-EeccCCCCccCccceEEEEE
Confidence 4445 66779999999999999 888899998866 889999999976554 333432 445552 2121222222222
Q ss_pred EeeecccccceEEe-------eecCcce--eeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeee
Q 040266 81 VDQDRRDHSMKFKQ-------VKTGFMK--RFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQ 151 (238)
Q Consensus 81 V~Ed~~~~~l~F~l-------~kgdFmK--~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vq 151 (238)
...+.....+-... ...++.| .+.|.|.++|+.-| .-.|.|||...+-
T Consensus 121 ~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~-----------------------~~~t~v~~~~~~D 177 (209)
T cd08905 121 AKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGD-----------------------PSKTKLTWLLSID 177 (209)
T ss_pred EEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCC-----------------------CCceEEEEEEeec
Confidence 22211111110001 1123333 36789999998411 1248899999999
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040266 152 PAIVPPPPISWYLRGITARTTEMLIHDLLAESA 184 (238)
Q Consensus 152 P~~~~Pppls~~vR~It~k~t~~lL~DL~~ea~ 184 (238)
|...-|. |++-.+..+..-.-|..|++.+.
T Consensus 178 pkG~iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 178 LKGWLPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred CCCCCCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 9987775 44666667776677777776654
No 36
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.50 E-value=0.0075 Score=52.17 Aligned_cols=152 Identities=12% Similarity=0.202 Sum_probs=97.1
Q ss_pred CCCceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCC-eeEEEEEEeEEEE-----Eeee------
Q 040266 4 PKGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH-RQVVEVEQAALWK-----FLWW------ 71 (238)
Q Consensus 4 ~kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~-rq~V~VeQ~g~w~-----FL~f------ 71 (238)
|.+++..+.++..++.|++.+.++|-|.+..... +|.+.++++++..+. .+++...-..-|= ++..
T Consensus 41 ~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W--~p~~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~ 118 (215)
T cd08877 41 PDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTW--VPFCIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDR 118 (215)
T ss_pred CCCCEEEEEEEEEecCChhHeEEEEehhhhHhhh--cccceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEee
Confidence 4556889999999999999999999999998866 899999999976665 2344333333341 1111
Q ss_pred ---eeeEEEEEEEeeecccc----cceEEeeecCc--ceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeee
Q 040266 72 ---SGVMLVHVLVDQDRRDH----SMKFKQVKTGF--MKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIAS 142 (238)
Q Consensus 72 ---sgt~~v~L~V~Ed~~~~----~l~F~l~kgdF--mK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS 142 (238)
.|++-|.+.-..+..+- .+.+...+.++ +..+.|.|.|+|+. .| .|
T Consensus 119 ~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~---------------------~~----~t 173 (215)
T cd08877 119 LEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPIS---------------------PT----KC 173 (215)
T ss_pred eccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcC---------------------CC----Ce
Confidence 11111111111110000 00001111122 25689999999983 22 37
Q ss_pred eeeeeeeeecccC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 040266 143 TVSLEQLIQPAIV-PPPPISWYLRGITARTTEMLIHDLLAESAR 185 (238)
Q Consensus 143 ~vT~~Q~vqP~~~-~Pppls~~vR~It~k~t~~lL~DL~~ea~r 185 (238)
.++|-..+-|.+- -|. |++-.++.+....++..|++.|..
T Consensus 174 ~v~~~~~~DP~g~~IP~---~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 174 YLRFVANVDPKMSLVPK---SLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred EEEEEEEcCCCcccCCH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999853 663 568888888899999999988764
No 37
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.20 E-value=0.0072 Score=54.59 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=77.5
Q ss_pred CCceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCe-eEEEEEEeEEEEEeeeeeeEEEEEEEee
Q 040266 5 KGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHR-QVVEVEQAALWKFLWWSGVMLVHVLVDQ 83 (238)
Q Consensus 5 kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~r-q~V~VeQ~g~w~FL~fsgt~~v~L~V~E 83 (238)
..++.-+.++..+++|++.+|++|.|.++...+ +.++.+.++|+.-+.. .++.+.-..-|- .-...|-++.....
T Consensus 73 ~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~W--D~~~~e~evI~~id~d~~iyy~~~p~PwP--vk~RDfV~~~s~~~ 148 (235)
T cd08873 73 QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEW--DPHGRSCEEVKRVGEDDGIYHTTMPSLTS--EKPNDFVLLVSRRK 148 (235)
T ss_pred CCCceEEEEEEEecCCHHHHHHHHhCcchhhhh--hhcccEEEEEEEeCCCcEEEEEEcCCCCC--CCCceEEEEEEEEe
Confidence 345666889999999999999999999998877 8899999999855442 233322223331 11122222212211
Q ss_pred eccc---ccceEEeee-------cCcc--eeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeee
Q 040266 84 DRRD---HSMKFKQVK-------TGFM--KRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQ 151 (238)
Q Consensus 84 d~~~---~~l~F~l~k-------gdFm--K~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vq 151 (238)
...+ -++.++-+. .||. ..+.|-|.|.|+. + -++.|||...+-
T Consensus 149 ~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~---------------------~----~~t~VtY~~~~d 203 (235)
T cd08873 149 PATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDC---------------------G----TCTEVSYYNETN 203 (235)
T ss_pred ccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECC---------------------C----CcEEEEEEEEcC
Confidence 1111 123333333 3443 4688999999972 1 348889999999
Q ss_pred cccCCC
Q 040266 152 PAIVPP 157 (238)
Q Consensus 152 P~~~~P 157 (238)
|.++|=
T Consensus 204 Pg~~~~ 209 (235)
T cd08873 204 PKLLSY 209 (235)
T ss_pred CCccce
Confidence 887653
No 38
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.15 E-value=0.015 Score=51.95 Aligned_cols=144 Identities=14% Similarity=0.160 Sum_probs=88.4
Q ss_pred CCCcee--EEEEEEEeC-CChhHHhhhccCCCCcccccccccceeeeeEecCC-CeeEEEEEEeEEE-----EEeeeeee
Q 040266 4 PKGSLC--NLNVKVNVG-LPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEG-HRQVVEVEQAALW-----KFLWWSGV 74 (238)
Q Consensus 4 ~kgglc--~l~~~~~i~-lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG-~rq~V~VeQ~g~w-----~FL~fsgt 74 (238)
+..|+. .+.++..+. ++++.++++|-|++....+ +.++.+.+||+..+ +..++...-..-| .|...+..
T Consensus 45 ~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~W--d~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~ 122 (235)
T cd08872 45 EEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDW--ETTLENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHI 122 (235)
T ss_pred CCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHH--HhhhheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEE
Confidence 334544 578888888 9999999999999998877 77888899986443 3334432222223 22222221
Q ss_pred EE-------------EEEEEeeecccccceEEeeecCcceeee--------------eeEEEeeecccccccCCCCCCCc
Q 040266 75 ML-------------VHVLVDQDRRDHSMKFKQVKTGFMKRFE--------------GCWVIEPLFVDEKLCFPFQPKTC 127 (238)
Q Consensus 75 ~~-------------v~L~V~Ed~~~~~l~F~l~kgdFmK~FE--------------GsW~VePl~vD~~~c~~~~P~~~ 127 (238)
-. +.+...-.++.. =.+.+|.|... |.|.+.|.
T Consensus 123 ~~~~d~~~~~~~~~~vii~~Sv~h~~~-----P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~--------------- 182 (235)
T cd08872 123 RKIPALEEPNAHDTWIVCNFSVDHDSA-----PLNNKCVRAKLTVAMICQTFVSPPDGNQEITRD--------------- 182 (235)
T ss_pred EecCccccccCCCeEEEEEecccCccC-----CCCCCeEEEEEEeeeeeeeeeecCCCcccccCC---------------
Confidence 11 111110111100 01123333332 44555441
Q ss_pred cccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 040266 128 EDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGITARTTEMLIHDLLAES 183 (238)
Q Consensus 128 ~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It~k~t~~lL~DL~~ea 183 (238)
-.+++|||.+.+-|....| +|.++.++.+.....|++|-.-+
T Consensus 183 -----------~~~~~ity~~~~dPgG~iP---~wvvn~~~k~~~P~~l~~~~~~~ 224 (235)
T cd08872 183 -----------NILCKITYVANVNPGGWAP---ASVLRAVYKREYPKFLKRFTSYV 224 (235)
T ss_pred -----------CCeEEEEEEEEeCCCCCcc---HHHHHHHHHhhchHHHHHHHHHH
Confidence 1478999999999999888 46799999999999999986544
No 39
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=97.02 E-value=0.048 Score=46.90 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=85.5
Q ss_pred eEEEEEEEeCCChhHHhh-hccCCCCcccccccccceeeeeEecC-CCeeEEEEEEeE--EE-----EEeeee------e
Q 040266 9 CNLNVKVNVGLPPDAVYN-IVTDPDNRRVFKNIKEVLSRRVLIDE-GHRQVVEVEQAA--LW-----KFLWWS------G 73 (238)
Q Consensus 9 c~l~~~~~i~lpPd~Vw~-vLTDydn~~~F~~I~~v~sskVl~~d-G~rq~V~VeQ~g--~w-----~FL~fs------g 73 (238)
.-+.++..+++||+.||+ ++.|++....+ .+.+...++|+.- ++..++..-... .| .|+..+ +
T Consensus 48 ~~~k~~~~i~~~~~~v~~~l~~d~~~~~~W--d~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~ 125 (208)
T cd08868 48 KVFRLTGVLDCPAEFLYNELVLNVESLPSW--NPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIREN 125 (208)
T ss_pred eEEEEEEEEcCCHHHHHHHHHcCcccccee--cCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCC
Confidence 457789999999999986 67899987766 7888888888643 343333211111 12 111111 1
Q ss_pred eEEEEEEEeeecccccceEEeeecCcc--eeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeee
Q 040266 74 VMLVHVLVDQDRRDHSMKFKQVKTGFM--KRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQ 151 (238)
Q Consensus 74 t~~v~L~V~Ed~~~~~l~F~l~kgdFm--K~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vq 151 (238)
++-+...-.+. +. +. ...++. ..+.|.|.|+|+. +| .-.|.|||-..+-
T Consensus 126 ~~~i~~~sv~h-~~----~P-~~~g~VR~~~~~~~~~i~p~~---------------------~~--~~~t~v~~~~~~D 176 (208)
T cd08868 126 CYLSSGVSVEH-PA----MP-PTKNYVRGENGPGCWILRPLP---------------------NN--PNKCNFTWLLNTD 176 (208)
T ss_pred eEEEEEEeccC-CC----CC-CCCCeEEEeccccEEEEEECC---------------------CC--CCceEEEEEEEEC
Confidence 11111111111 00 00 112332 2367999999983 11 2458899999999
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 040266 152 PAIVPPPPISWYLRGITARTTEMLIHDLLAESAR 185 (238)
Q Consensus 152 P~~~~Pppls~~vR~It~k~t~~lL~DL~~ea~r 185 (238)
|...-|..+ +-.++.+..-..+..|++.+..
T Consensus 177 p~G~iP~~l---vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 177 LKGWLPQYL---VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred CCCCCccee---eehhhHHHHHHHHHHHHHHHhh
Confidence 998777544 6666677777777788776654
No 40
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=96.87 E-value=0.036 Score=48.31 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=90.8
Q ss_pred CCCCceeEEEEEEEeC-CChhHHhhhccCCCCcccccccccceeeeeEe--cCCCeeEEEEEEeEEE-----EEeeee--
Q 040266 3 VPKGSLCNLNVKVNVG-LPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLI--DEGHRQVVEVEQAALW-----KFLWWS-- 72 (238)
Q Consensus 3 ~~kgglc~l~~~~~i~-lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~--~dG~rq~V~VeQ~g~w-----~FL~fs-- 72 (238)
.+..|++-+.++..+. ++|+.++++|-|+++...+ ++.+.+ +++ ++|. .++...-..-| .|+..+
T Consensus 43 ~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~W--d~~~~~--~~~~~~~~~-~i~y~~~k~PwPvs~RD~V~~r~~ 117 (207)
T cd08910 43 DEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQW--DQYVKE--LYEKECDGE-TVIYWEVKYPFPLSNRDYVYIRQR 117 (207)
T ss_pred cCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHH--HHHHHh--heeecCCCC-EEEEEEEEcCCCCCCceEEEEEEe
Confidence 4678888999999998 8999999999999997766 555443 343 2232 23322222223 122111
Q ss_pred ------e-eEEE-EEEEeeecccccceEEeeecCcc--eeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeee
Q 040266 73 ------G-VMLV-HVLVDQDRRDHSMKFKQVKTGFM--KRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIAS 142 (238)
Q Consensus 73 ------g-t~~v-~L~V~Ed~~~~~l~F~l~kgdFm--K~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS 142 (238)
+ .+-+ .....+. +. +. .+.++. ..+.|.|.++|.. .-++
T Consensus 118 ~~~~~~~~~~~iv~~~s~~~-p~----~P-~~~~~VRv~~~~~~~~i~p~~-------------------------~~~t 166 (207)
T cd08910 118 RDLDVEGRKIWVILARSTSL-PQ----LP-EKPGVIRVKQYKQSLAIESDG-------------------------KKGS 166 (207)
T ss_pred ccccCCCCeEEEEEecCCCC-CC----CC-CCCCCEEEEEEEEEEEEEeCC-------------------------CCce
Confidence 1 1111 1111111 11 11 112332 3589999999862 1358
Q ss_pred eeeeeeeeecccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040266 143 TVSLEQLIQPAIVPPPPISWYLRGITARTTEMLIHDLLAESA 184 (238)
Q Consensus 143 ~vT~~Q~vqP~~~~Pppls~~vR~It~k~t~~lL~DL~~ea~ 184 (238)
.++|....-|...-|. |++..++.++....|.+|+..+.
T Consensus 167 ~i~~~~~~DPgG~IP~---wlvN~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 167 KVFMYYFDNPGGMIPS---WLINWAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred EEEEEEEeCCCCcchH---HHHHHHHHHhhHHHHHHHHHHHh
Confidence 9999999999987774 66999999999999999998774
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.57 E-value=0.022 Score=45.52 Aligned_cols=85 Identities=18% Similarity=0.306 Sum_probs=50.7
Q ss_pred EEEEEEeCCChhHHhhhccCCCCccc-ccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeeccccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRV-FKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHS 89 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~-F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~ 89 (238)
+..++.+++||+.||+.||||+.+.. | .+.. +.. -..|++ -.|.|-.+.+.+ ...+.|-.+...
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~--~~~~-~~~--~~~Gg~--------~~~~~~~~~~~~--~g~~~~~~p~~~ 66 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFW--FTGS-SGR--LEEGKT--------VTWDWEMYGASV--PVNVLEIEPNKR 66 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhcccc--ccCC-Ccc--ccCCCE--------EEEEEEccCCce--EEEEEEEcCCCE
Confidence 46789999999999999999999765 4 2211 111 112331 136666565543 334555555567
Q ss_pred ceEEeeecCcceeeeeeEEEeee
Q 040266 90 MKFKQVKTGFMKRFEGCWVIEPL 112 (238)
Q Consensus 90 l~F~l~kgdFmK~FEGsW~VePl 112 (238)
+.|....++- .-.=.|.++|.
T Consensus 67 l~~~w~~~~~--~s~v~~~l~~~ 87 (136)
T cd08901 67 IVIEWGDPGE--PTTVEWTFEEL 87 (136)
T ss_pred EEEEecCCCC--CEEEEEEEEEC
Confidence 8887554321 12336777775
No 42
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.54 E-value=0.024 Score=44.38 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=25.3
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCcccc
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNRRVF 37 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~~~F 37 (238)
++..++.|.+||+.||+++||+++.+.+
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W 29 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQW 29 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhc
Confidence 5788999999999999999999997666
No 43
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=96.49 E-value=0.41 Score=40.05 Aligned_cols=143 Identities=17% Similarity=0.308 Sum_probs=92.2
Q ss_pred ceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEec-CCCeeEEEEEEeEEE-------EEeeeeeeEEEE
Q 040266 7 SLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLID-EGHRQVVEVEQAALW-------KFLWWSGVMLVH 78 (238)
Q Consensus 7 glc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~-dG~rq~V~VeQ~g~w-------~FL~fsgt~~v~ 78 (238)
++..+.+...++.+++.++..|-|... .+ .+.+.+.++|+. +.+..++..-....| .|+..+....
T Consensus 44 ~~~~~k~~~~v~~~~~~~~~~~~~~~~--~W--d~~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~-- 117 (206)
T PF01852_consen 44 PIKMFKAEGVVPASPEQVVEDLLDDRE--QW--DKMCVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRK-- 117 (206)
T ss_dssp SCEEEEEEEEESSCHHHHHHHHHCGGG--HH--STTEEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEE--
T ss_pred cceEEEEEEEEcCChHHHHHHHHhhHh--hc--ccchhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEE--
Confidence 677788999999999977777776665 34 556667777754 444444444444444 3332222221
Q ss_pred EEEeeecccccceEEee--------ecCcce--eeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeee
Q 040266 79 VLVDQDRRDHSMKFKQV--------KTGFMK--RFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQ 148 (238)
Q Consensus 79 L~V~Ed~~~~~l~F~l~--------kgdFmK--~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q 148 (238)
. ......+.+.-+ ..++.| .+-+.|.|+|+. +| .|.|||-.
T Consensus 118 ---~-~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~---------------------~~----~~~vt~~~ 168 (206)
T PF01852_consen 118 ---D-EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLG---------------------DG----RTRVTYVS 168 (206)
T ss_dssp ---C-TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEET---------------------TC----EEEEEEEE
T ss_pred ---e-ccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEcc---------------------CC----CceEEEEE
Confidence 0 111111222111 345555 678999999983 22 18999999
Q ss_pred eeecccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040266 149 LIQPAIVPPPPISWYLRGITARTTEMLIHDLLAESARIR 187 (238)
Q Consensus 149 ~vqP~~~~Pppls~~vR~It~k~t~~lL~DL~~ea~rir 187 (238)
.+-|...-| +|++..+..++..++++.|.+.+.+.+
T Consensus 169 ~~D~~G~iP---~~~~n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 169 QVDPKGWIP---SWLVNMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEESSSSSH---HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EECCCCCCh---HHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 999998777 577999999999999999988887654
No 44
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=96.46 E-value=0.17 Score=44.31 Aligned_cols=150 Identities=15% Similarity=0.070 Sum_probs=87.9
Q ss_pred CCCCceeEEEEEEEeCCChhHHh-hhccCCCCcccccccccceeeeeEecCCC-eeEEEEEEeEEEEE-eeeeeeEEEEE
Q 040266 3 VPKGSLCNLNVKVNVGLPPDAVY-NIVTDPDNRRVFKNIKEVLSRRVLIDEGH-RQVVEVEQAALWKF-LWWSGVMLVHV 79 (238)
Q Consensus 3 ~~kgglc~l~~~~~i~lpPd~Vw-~vLTDydn~~~F~~I~~v~sskVl~~dG~-rq~V~VeQ~g~w~F-L~fsgt~~v~L 79 (238)
+|..| --+.++..+++||+.+| ++|.|.++...+ ++++.+.++|+.-+. ..++. .-...|-. ..=...|-+..
T Consensus 44 ~~~~~-~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W--~~~~~~~~vi~~~~~~~~i~Y-~v~~p~~~~pv~~RDfV~~r 119 (209)
T cd08906 44 VPFHG-KTFILKAFMQCPAELVYQEVILQPEKMVLW--NKTVSACQVLQRVDDNTLVSY-DVAAGAAGGVVSPRDFVNVR 119 (209)
T ss_pred cCCCC-cEEEEEEEEcCCHHHHHHHHHhChhhcccc--CccchhhhheeeccCCcEEEE-EEccccccCCCCCCceEEEE
Confidence 44455 44588999999999998 699999998877 899999999976554 23332 22233310 00011111111
Q ss_pred EEeeecccccceEEe--------eecCcce---eeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeee
Q 040266 80 LVDQDRRDHSMKFKQ--------VKTGFMK---RFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQ 148 (238)
Q Consensus 80 ~V~Ed~~~~~l~F~l--------~kgdFmK---~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q 148 (238)
....+.. ..+...+ ...+|.| .+.|.|...|-. | .-.|.+||..
T Consensus 120 ~~~~~~~-~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~----------------------~--~~~t~vt~~~ 174 (209)
T cd08906 120 RIERRRD-RYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSAS----------------------N--PSVCTFIWIL 174 (209)
T ss_pred EEEecCC-cEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCC----------------------C--CCceEEEEEE
Confidence 1111111 1111000 1123333 346677666521 1 1348999999
Q ss_pred eeecccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040266 149 LIQPAIVPPPPISWYLRGITARTTEMLIHDLLAESA 184 (238)
Q Consensus 149 ~vqP~~~~Pppls~~vR~It~k~t~~lL~DL~~ea~ 184 (238)
.+-|...-|. |++-....++.-..|..|++.+.
T Consensus 175 ~~Dp~G~lP~---~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 175 NTDLKGRLPR---YLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred ecCCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987774 55777777777777777877664
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.40 E-value=0.15 Score=44.89 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=82.1
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCC-eeEEEEEEeEEEEEeeeeeeEE------------
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH-RQVVEVEQAALWKFLWWSGVML------------ 76 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~-rq~V~VeQ~g~w~FL~fsgt~~------------ 76 (238)
.+.++..+++||+.||++|-|.++.... ++.+.+.+||+.-+. ..++...-.+-|-++.=...|-
T Consensus 46 ~~~ge~~v~as~~~v~~ll~D~~~r~~W--d~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAVKDPRTRFLY--DTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHhCcchhhhh--HHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 3557889999999999999999998877 788899999975444 3344444444553321111121
Q ss_pred -EEEEEeeecccccceEEeeec-Ccce--eeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeec
Q 040266 77 -VHVLVDQDRRDHSMKFKQVKT-GFMK--RFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQP 152 (238)
Q Consensus 77 -v~L~V~Ed~~~~~l~F~l~kg-dFmK--~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP 152 (238)
+.+.-.+++ +-=..+ +|.| .+.|-|.++|+..++ .-.|+|||...+-|
T Consensus 124 vi~~~SV~~~------~~P~~~~~~VR~~~~~~gw~i~P~~~~g----------------------~~~t~vty~~q~DP 175 (205)
T cd08874 124 VVACQSVYDK------SMPEPGRSLVRGEILPSAWILEPVTVEG----------------------NQYTRVIYIAQVAL 175 (205)
T ss_pred EEEEEecccc------cCCCCCCCeEEeeeEeeeEEEEECccCC----------------------CCcEEEEEEEEECC
Confidence 222222220 000112 3333 478999999984321 13488999999999
Q ss_pred c-cCCCCchhHHHHHHHHHHHHHHHHHHH
Q 040266 153 A-IVPPPPISWYLRGITARTTEMLIHDLL 180 (238)
Q Consensus 153 ~-~~~Pppls~~vR~It~k~t~~lL~DL~ 180 (238)
. .--|+.| + +.++++...++.-|.
T Consensus 176 ggg~iP~~l---~-N~~~~~~p~~~~~~~ 200 (205)
T cd08874 176 CGPDVPAQL---L-SSLSKRQPLVIARLA 200 (205)
T ss_pred CCCCCCHHH---H-hHHHHhccHHHHHHH
Confidence 9 5555433 3 344445555554443
No 46
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.35 E-value=0.13 Score=44.37 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=72.6
Q ss_pred ceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCC-eeEEEEEEeEEEEEeeeeeeEEEEEEEeeec
Q 040266 7 SLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH-RQVVEVEQAALWKFLWWSGVMLVHVLVDQDR 85 (238)
Q Consensus 7 glc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~-rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~ 85 (238)
.+.-+.++..++++|+.|++.|-|+. ..+ .+++.+.++|+.-+. ..++...-..-|-+ -...|-+.-.-..+.
T Consensus 42 ~l~~~K~~~~v~a~~~~v~~~l~d~r--~~W--d~~~~~~~vie~id~~~~i~y~~~~~p~pv--~~RDfV~~r~~~~~~ 115 (197)
T cd08869 42 PLRLWRASTEVEAPPEEVLQRILRER--HLW--DDDLLQWKVVETLDEDTEVYQYVTNSMAPH--PTRDYVVLRTWRTDL 115 (197)
T ss_pred cEEEEEEEEEeCCCHHHHHHHHHHHH--hcc--chhhheEEEEEEecCCcEEEEEEeeCCCCC--CCceEEEEEEEEecC
Confidence 57778999999999999999987753 434 677888888865443 33343333333421 111111110011111
Q ss_pred ccc--cceEEeee------cCcce--eeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccC
Q 040266 86 RDH--SMKFKQVK------TGFMK--RFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIV 155 (238)
Q Consensus 86 ~~~--~l~F~l~k------gdFmK--~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~ 155 (238)
.++ ++.+.-+. .+|.+ .+.|.|.|+|+. . -+|.|||-..+-|...
T Consensus 116 ~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~---------------------~----~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 116 PKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCG---------------------S----GKSRVTHICRVDLRGR 170 (197)
T ss_pred CCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECC---------------------C----CCeEEEEEEEECCCCC
Confidence 111 22222221 14433 367999999972 1 2589999999999987
Q ss_pred CCCch
Q 040266 156 PPPPI 160 (238)
Q Consensus 156 ~Pppl 160 (238)
-|..+
T Consensus 171 iP~wl 175 (197)
T cd08869 171 SPEWY 175 (197)
T ss_pred CCcee
Confidence 77544
No 47
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.34 E-value=0.07 Score=42.22 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=49.4
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccc-cccccce--eeeeEecCCCeeEEEEEEeEEEEEee--eee--eEEEEEEEee
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVF-KNIKEVL--SRRVLIDEGHRQVVEVEQAALWKFLW--WSG--VMLVHVLVDQ 83 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F-~~I~~v~--sskVl~~dG~rq~V~VeQ~g~w~FL~--fsg--t~~v~L~V~E 83 (238)
+.++..+++||+.||+++|||+.+..+ .-.+... .-..--+.|+ +|.|.+ ..| ...+.-.+.|
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG----------~~~~~~~~~~g~~~~~~~g~~~e 71 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGG----------KFSYRMEAKDGSMGFDFEGTYTE 71 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCC----------EEEEEEEcCCCCcccccceEEEE
Confidence 678899999999999999999996655 1111111 0111112333 344432 111 1233344555
Q ss_pred ecccccceEEeeecCcceeeeeeEEEeee
Q 040266 84 DRRDHSMKFKQVKTGFMKRFEGCWVIEPL 112 (238)
Q Consensus 84 d~~~~~l~F~l~kgdFmK~FEGsW~VePl 112 (238)
-.+...+.|....+ ..-+|+++|.
T Consensus 72 i~p~~~l~~~~~~~-----~~v~~~l~~~ 95 (133)
T cd08897 72 VEPHKLIEYTMEDG-----REVEVEFTEE 95 (133)
T ss_pred ECCCCEEEEEcCCC-----CEEEEEEEEC
Confidence 56667788876432 2357888874
No 48
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.29 E-value=0.092 Score=47.47 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=37.7
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCC
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH 54 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~ 54 (238)
.+.++..+++|++.||++|.|+++...+ +.++.+.++|+.-+.
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~D~~~r~~W--d~~~~e~~vIe~id~ 124 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLSDLRRRPEW--DKHYRSCELVQQVDE 124 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhhhh--HhhccEEEEEEecCC
Confidence 4578889999999999999999998877 899999999975554
No 49
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=96.26 E-value=0.4 Score=40.29 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=86.7
Q ss_pred CceeEEEEEEEeCCChhH-HhhhccCCCCcccccccccceeeeeEecCCC-eeEEEEEEeEEEEEeeeeeeEEEEEEEee
Q 040266 6 GSLCNLNVKVNVGLPPDA-VYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH-RQVVEVEQAALWKFLWWSGVMLVHVLVDQ 83 (238)
Q Consensus 6 gglc~l~~~~~i~lpPd~-Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~-rq~V~VeQ~g~w~FL~fsgt~~v~L~V~E 83 (238)
.++..+.+...+..+++. +-++|.|++....+ .+.+.+.++++.-.. ..++..-....|. +.-...|-+.-....
T Consensus 42 ~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~W--d~~~~~~~~ie~~~~~~~i~~~~~~~~~~-p~~~RDfv~~r~~~~ 118 (206)
T smart00234 42 SPGEASRAVGVVPMVCADLVEELMDDLRYRPEW--DKNVAKAETLEVIDNGTVIYHYVSKFVAG-PVSPRDFVFVRYWRE 118 (206)
T ss_pred CceEEEEEEEEEecChHHHHHHHHhcccchhhC--chhcccEEEEEEECCCCeEEEEEEecccC-cCCCCeEEEEEEEEE
Confidence 367889999999999986 66799999998877 778888888854322 2333322222230 110011111111111
Q ss_pred ecccc-cceEEee-------ecCcc--eeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecc
Q 040266 84 DRRDH-SMKFKQV-------KTGFM--KRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPA 153 (238)
Q Consensus 84 d~~~~-~l~F~l~-------kgdFm--K~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~ 153 (238)
+..+. .+...-+ ..++. ..+.|.|.|+|+. +| .|+|||-..+-|.
T Consensus 119 ~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~---------------------~~----~t~vt~~~~~D~~ 173 (206)
T smart00234 119 LVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG---------------------NG----PSKVTWVSHADLK 173 (206)
T ss_pred cCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC---------------------CC----CeEEEEEEEEecC
Confidence 11110 1111010 12333 2478999999973 22 2889999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 040266 154 IVPPPPISWYLRGITARTTEMLIHDLLAESAR 185 (238)
Q Consensus 154 ~~~Pppls~~vR~It~k~t~~lL~DL~~ea~r 185 (238)
..-|. |++..+........+.+|++.+..
T Consensus 174 G~iP~---~lvn~~~~~~~~~~~~~~~~~~~~ 202 (206)
T smart00234 174 GWLPH---WLVRSLIKSGLAEFAKTWVATLQK 202 (206)
T ss_pred CCccc---eeehhhhhhhHHHHHHHHHHHHHH
Confidence 76664 457777777777777777665543
No 50
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.25 E-value=0.25 Score=39.64 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=46.5
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEee--e--------eeeEEEEEE
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLW--W--------SGVMLVHVL 80 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~--f--------sgt~~v~L~ 80 (238)
+.++..+.+||+.||+.||||+.+.-+- -|.-....+. ..+...-|.+.+-+ . +..+.+...
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~-~p~~~~~~~~-------~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~ 73 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWL-PPDGMTGTVH-------EFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGR 73 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcC-CCCCeEeEEE-------EEecccCCeEEEEEEcCCccccccCCcEeeeEEE
Confidence 5678889999999999999999966541 1321111111 12333444444422 1 123455666
Q ss_pred EeeecccccceEEee
Q 040266 81 VDQDRRDHSMKFKQV 95 (238)
Q Consensus 81 V~Ed~~~~~l~F~l~ 95 (238)
+.|-.+...+.|...
T Consensus 74 v~~v~p~~~i~~~~~ 88 (146)
T cd08895 74 FLELVPNERIVYTDV 88 (146)
T ss_pred EEEEcCCCEEEEEEE
Confidence 777777778888754
No 51
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.25 E-value=0.083 Score=42.44 Aligned_cols=76 Identities=8% Similarity=0.083 Sum_probs=46.8
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeee---eeeEEEEEEEeeeccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWW---SGVMLVHVLVDQDRRD 87 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~f---sgt~~v~L~V~Ed~~~ 87 (238)
|.++..+++||+.||++||||+.+..+- -|. ..+ + ....+++.--|.|.|.+- ...+.+.-.+.+-.+.
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~-~p~-~~~-~-----~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~ 73 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWF-CPK-PWT-T-----EVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPG 73 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccC-CCC-Ccc-c-----eEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCC
Confidence 6788999999999999999999965541 122 000 0 001233445556666542 1334455566676776
Q ss_pred ccceEEe
Q 040266 88 HSMKFKQ 94 (238)
Q Consensus 88 ~~l~F~l 94 (238)
..+.|..
T Consensus 74 ~~l~~t~ 80 (146)
T cd08896 74 ERLVFTD 80 (146)
T ss_pred CEEEEEE
Confidence 7788764
No 52
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=95.98 E-value=0.42 Score=39.99 Aligned_cols=89 Identities=16% Similarity=0.287 Sum_probs=53.4
Q ss_pred eeEEEEEEEeCCChhHHhhhccCCCC-cccccccccce-eeeeEecCCCee-EEEEEEeEEEEEeeeeeeEEEEEEEeee
Q 040266 8 LCNLNVKVNVGLPPDAVYNIVTDPDN-RRVFKNIKEVL-SRRVLIDEGHRQ-VVEVEQAALWKFLWWSGVMLVHVLVDQD 84 (238)
Q Consensus 8 lc~l~~~~~i~lpPd~Vw~vLTDydn-~~~F~~I~~v~-sskVl~~dG~rq-~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed 84 (238)
.-.+..++.+.+||+.+|++|.+-++ ++ +.+|.+. |-.+++-||..- .|+ .|+|---...-.+.=.|+..
T Consensus 3 ~~~~~~E~~~~~~a~k~~ka~~~~~~llp--ki~P~~i~sve~~eGdgg~gGSIk-----~~~f~~~~~~~~~Kekve~~ 75 (151)
T PF00407_consen 3 VGKLEVEVEVKVSADKLWKAFKSSPHLLP--KILPHVIKSVEVVEGDGGPGGSIK-----KWTFGPGGPFKYVKEKVEAI 75 (151)
T ss_dssp EEEEEEEEEESS-HHHHHHHHTTHHHHHH--HHSTTTEEEEEEEESSSSTTT-EE-----EEEEETTSSEEEEEEEEEEE
T ss_pred cEEEEEEEEecCCHHHHHHHHhcCccchh--hhChhhceeEEEEccCCCCCCeEE-----EEEecCCCCcceeEEEEEee
Confidence 45688999999999999999998222 23 3355544 445666666632 221 25554311111233334443
Q ss_pred ccc-ccceEEeeecCcceee
Q 040266 85 RRD-HSMKFKQVKTGFMKRF 103 (238)
Q Consensus 85 ~~~-~~l~F~l~kgdFmK~F 103 (238)
..+ +++.|.+++||+|..|
T Consensus 76 D~~~~~~~y~viEGd~l~~~ 95 (151)
T PF00407_consen 76 DEENKTITYTVIEGDVLGDY 95 (151)
T ss_dssp ETTTTEEEEEEEEETTGTTT
T ss_pred cCCCcEEEEEEEeccccccE
Confidence 333 8999999999988644
No 53
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=95.76 E-value=0.17 Score=40.68 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=46.2
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeee---eeeEEEEEEEeeeccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWW---SGVMLVHVLVDQDRRD 87 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~f---sgt~~v~L~V~Ed~~~ 87 (238)
|.++-.+++||+.||+.||||+.+..+- -|.--.-.+. .+.+.--|.|.|.+- ...+.+.-.+.|-.+.
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~-~p~~~~~~~~-------~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~ 73 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWW-GPRGLTMTVC-------ECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPP 73 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhcc-CCCCCcceEE-------EEeccCCCEEEEEEECCCCCEecceEEEEEEcCC
Confidence 6788899999999999999999965551 1210000011 122233455666542 1334555666776776
Q ss_pred ccceEEee
Q 040266 88 HSMKFKQV 95 (238)
Q Consensus 88 ~~l~F~l~ 95 (238)
..+.|...
T Consensus 74 ~~l~~t~~ 81 (142)
T cd07826 74 ERIVQTEE 81 (142)
T ss_pred CEEEEEeE
Confidence 77777643
No 54
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.62 E-value=1 Score=39.19 Aligned_cols=144 Identities=11% Similarity=0.019 Sum_probs=85.9
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCc--ccccccccceeeeeEecCCC-eeEEEEEEeEEEEEe--eeeeeEEEEEEEeee
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNR--RVFKNIKEVLSRRVLIDEGH-RQVVEVEQAALWKFL--WWSGVMLVHVLVDQD 84 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~--~~F~~I~~v~sskVl~~dG~-rq~V~VeQ~g~w~FL--~fsgt~~v~L~V~Ed 84 (238)
-+.++..++++|+.||++|-|.++. ... .+++.+.+||+.-+. ..++. +...|... .-...|=++.... .
T Consensus 47 ~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W--~~~~~~~~vle~id~~~~i~~--~~~p~~~~~~vs~RDfV~~~~~~-~ 121 (208)
T cd08903 47 LYKGEGIVYATLEQVWDCLKPAAGGLRVKW--DQNVKDFEVVEAISDDVSVCR--TVTPSAAMKIISPRDFVDVVLVK-R 121 (208)
T ss_pred EEEEEEEecCCHHHHHHHHHhccchhhhhh--hhccccEEEEEEecCCEEEEE--EecchhcCCCcCCCceEEEEEEE-e
Confidence 3679999999999999999887663 433 788899999975443 33332 34455422 1112222211111 1
Q ss_pred cccccceEEe---------eecCcceeee--eeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecc
Q 040266 85 RRDHSMKFKQ---------VKTGFMKRFE--GCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPA 153 (238)
Q Consensus 85 ~~~~~l~F~l---------~kgdFmK~FE--GsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~ 153 (238)
..++.+.... ...+|.|.+. +.|.+.|+.. + .-.|.|||-..+-|.
T Consensus 122 ~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~---------------------~--~~~t~v~~~~~~Dpk 178 (208)
T cd08903 122 YEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG---------------------E--PDKTQLVSFFQTDLS 178 (208)
T ss_pred cCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC---------------------C--CCceEEEEEEEeccC
Confidence 1222221111 2246666633 3555566531 1 134889999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040266 154 IVPPPPISWYLRGITARTTEMLIHDLLAESA 184 (238)
Q Consensus 154 ~~~Pppls~~vR~It~k~t~~lL~DL~~ea~ 184 (238)
..-|. |++-.......-..|..|++...
T Consensus 179 G~iP~---~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 179 GYLPQ---TVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CCcCH---HHHHHHhhHHHHHHHHHHHHHHh
Confidence 87774 55777777777788888876543
No 55
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=95.46 E-value=0.098 Score=41.37 Aligned_cols=27 Identities=19% Similarity=0.538 Sum_probs=24.2
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVF 37 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F 37 (238)
+.++..+++||+.||+.||||+.+..+
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W 28 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAF 28 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhh
Confidence 678899999999999999999996655
No 56
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=95.20 E-value=0.23 Score=45.03 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=41.5
Q ss_pred CCCceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCC
Q 040266 4 PKGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH 54 (238)
Q Consensus 4 ~kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~ 54 (238)
+..++.-+.+++.+++|++.+|++|-|+++...+ +.++.+.+||+.-+.
T Consensus 73 ~~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~W--d~~~~e~~vI~qld~ 121 (236)
T cd08914 73 EEHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLW--DPHFLSCEVIDWVSE 121 (236)
T ss_pred cCCCcEEEEEEEEEcCCHHHHHHHHhChhhhchh--HHhhceEEEEEEeCC
Confidence 3344667889999999999999999999998877 999999999975443
No 57
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=94.87 E-value=0.15 Score=38.66 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=45.6
Q ss_pred CCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEe-eeeeeEEEEEEEeeecccccceEEeee
Q 040266 18 GLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFL-WWSGVMLVHVLVDQDRRDHSMKFKQVK 96 (238)
Q Consensus 18 ~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL-~fsgt~~v~L~V~Ed~~~~~l~F~l~k 96 (238)
++||+.||++||||+.+..+-.... -.+-.+.|. +|.|. .-.+.+.+...+.|-.+...|.|...-
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~~~~---~~~~~~~Gg----------~~~~~~~~g~~~~~~~~v~~~~p~~~i~~~~~~ 67 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFTTSE---AEMDFRPGG----------SFRFMDPDGGEFGFDGTVLEVEPPERIVFTWRM 67 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSEEEE---EEEECSTTE----------EEEEEETTSEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred CcCHHHHHHHHCCHhHHhhccCCCc---ceeeeecCC----------EEEEEecCCCCceeeEEEEEEeCCEEEEEEEEc
Confidence 4899999999999999776611111 111123344 23331 112233344446666666778877553
Q ss_pred cCc--ceeeeeeEEEeee
Q 040266 97 TGF--MKRFEGCWVIEPL 112 (238)
Q Consensus 97 gdF--mK~FEGsW~VePl 112 (238)
++- .....-+|.+++.
T Consensus 68 ~~~~~~~~~~v~~~~~~~ 85 (124)
T PF08327_consen 68 PDDPDGPESRVTFEFEEE 85 (124)
T ss_dssp ETSSSCEEEEEEEEEEEE
T ss_pred cCCCCCCceEEEEEEEEc
Confidence 321 1246778888884
No 58
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=94.70 E-value=1.5 Score=38.73 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=85.1
Q ss_pred CCCceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCC-eeEEEEEEeEEE-----EEeee------
Q 040266 4 PKGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH-RQVVEVEQAALW-----KFLWW------ 71 (238)
Q Consensus 4 ~kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~-rq~V~VeQ~g~w-----~FL~f------ 71 (238)
+...+.-..+++.++++|+.|.++|-|. .... +.++.+.+||+.-+. .-++......-| .|...
T Consensus 47 ~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~W--d~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~ 122 (204)
T cd08908 47 EGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLW--DVDLLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTN 122 (204)
T ss_pred CCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHH--HHHhhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEe
Confidence 4456788899999999999999998666 4434 788889999865443 222222111222 22111
Q ss_pred --eeeEEEEEEEeeecccccceEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeee
Q 040266 72 --SGVMLVHVLVDQDRRDHSMKFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQL 149 (238)
Q Consensus 72 --sgt~~v~L~V~Ed~~~~~l~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~ 149 (238)
.|++-+.+.= -.++..-+. +=-...+.|.|.|+|.. . -+|.|||...
T Consensus 123 ~~~g~~~I~~~S-v~h~~~P~~-----~VR~~~~~~~w~i~P~g---------------------~----g~t~vtyi~~ 171 (204)
T cd08908 123 LPKGACALLATS-VDHDRAPVA-----GVRVNVLLSRYLIEPCG---------------------S----GKSKLTYMCR 171 (204)
T ss_pred CCCCeEEEEEee-cCcccCCcC-----ceEEEEEeeEEEEEECC---------------------C----CcEEEEEEEE
Confidence 2333222220 111111122 11234689999999972 1 2488999999
Q ss_pred eecccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 040266 150 IQPAIVPPPPISWYLRGITARTTEMLIHDLLAESARIRGSF 190 (238)
Q Consensus 150 vqP~~~~Pppls~~vR~It~k~t~~lL~DL~~ea~rir~~~ 190 (238)
+-|..--|..+.+-.=.|+ .+++.|||...
T Consensus 172 ~DPgG~iP~W~~N~~g~~~-----------~~~~~~~r~sf 201 (204)
T cd08908 172 IDLRGHMPEWYTKSFGHLC-----------AAEVVKIRDSF 201 (204)
T ss_pred eCCCCCCcHHHHhhHHHHH-----------HHHHHHHHhhc
Confidence 9999988865544443343 56777777655
No 59
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=94.46 E-value=0.58 Score=37.68 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=47.5
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSM 90 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~l 90 (238)
|..++.|++||+.||+.|||+ -..-| .|.-... ...|....+...--|.|.+..-.|...+.-.+.|-.+...+
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~~-l~~W~--~p~~~~~---~~~~~~~~~d~~~GG~~~~~~~~g~~~~~g~v~~v~p~~~l 75 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTEG-FGAWW--PPEYHFV---FSPGAEVVFEPRAGGRWYEIGEDGTECEWGTVLAWEPPSRL 75 (149)
T ss_pred eEEEEEecCCHHHHHHHHHhc-hhhcc--CCCcccc---cCCCccEEEcccCCcEEEEecCCCcEeceEEEEEEcCCCEE
Confidence 578899999999999999993 22223 2221000 00111111121222444432223444444556665666677
Q ss_pred eEEee-ecCcce----eeeeeEEEeee
Q 040266 91 KFKQV-KTGFMK----RFEGCWVIEPL 112 (238)
Q Consensus 91 ~F~l~-kgdFmK----~FEGsW~VePl 112 (238)
.|.-. ..++.. .-.=+|.++|.
T Consensus 76 ~~tw~~~~~~~~~~~~~t~vt~~l~~~ 102 (149)
T cd08891 76 VFTWQINADWRPDPDKASEVEVRFEAV 102 (149)
T ss_pred EEEeccCCCcCcCCCCceEEEEEEEEC
Confidence 77644 222211 12345777774
No 60
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=92.47 E-value=0.35 Score=39.00 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.0
Q ss_pred eCCChhHHhhhccCCCCcccc
Q 040266 17 VGLPPDAVYNIVTDPDNRRVF 37 (238)
Q Consensus 17 i~lpPd~Vw~vLTDydn~~~F 37 (238)
+++||+.||+.||||+.++.+
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w 21 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRL 21 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHH
Confidence 478999999999999996643
No 61
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=92.25 E-value=0.28 Score=43.70 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=67.2
Q ss_pred EEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCCeeEEEEEEeEEEEEee-eeeeEEEEEEEeeecccc
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLW-WSGVMLVHVLVDQDRRDH 88 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~-fsgt~~v~L~V~Ed~~~~ 88 (238)
.+..+++|+.|.|.||++-.|-+|++.| ++-+.|-+|+.++- .+|+.-- ...+|+-.-.+.++.+..
T Consensus 71 ~v~~~V~I~kPae~vy~~W~dLe~lP~~--Mkhl~SVkVlddkr----------SrW~~~ap~g~~v~Wea~it~d~~~e 138 (217)
T COG5637 71 EVEVQVTIDKPAEQVYAYWRDLENLPLW--MKHLDSVKVLDDKR----------SRWKANAPLGLEVEWEAEITKDIPGE 138 (217)
T ss_pred EEEEEEEeCChHHHHHHHHHhhhhhhHH--HHhhceeeccCCCc----------cceeEcCCCCceEEEeehhhccCCCc
Confidence 4567899999999999999999999988 77777888877643 3476655 566677777788899988
Q ss_pred cceEEeeecCcceeeeeeEEEeee
Q 040266 89 SMKFKQVKTGFMKRFEGCWVIEPL 112 (238)
Q Consensus 89 ~l~F~l~kgdFmK~FEGsW~VePl 112 (238)
.|...-..|-=+ -=.|+=+.++.
T Consensus 139 ~I~W~Sl~Ga~v-~NsG~VrF~~~ 161 (217)
T COG5637 139 RIQWESLPGARV-ENSGAVRFYDA 161 (217)
T ss_pred EEeeecCCCCcC-CCCccEEeeeC
Confidence 888888877332 13344444444
No 62
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=92.04 E-value=6.8 Score=33.57 Aligned_cols=138 Identities=13% Similarity=0.014 Sum_probs=83.6
Q ss_pred eEEEEEEEeCCChhHHhhhccC--CCCcccccccccceeeeeEecCC-CeeEEEEEEeEEEE---------Eeee-----
Q 040266 9 CNLNVKVNVGLPPDAVYNIVTD--PDNRRVFKNIKEVLSRRVLIDEG-HRQVVEVEQAALWK---------FLWW----- 71 (238)
Q Consensus 9 c~l~~~~~i~lpPd~Vw~vLTD--ydn~~~F~~I~~v~sskVl~~dG-~rq~V~VeQ~g~w~---------FL~f----- 71 (238)
.-+.++..++++|+.|+++|-| .++..-. .+.+.+.++|+.-+ +..++.. ...|- |+..
T Consensus 46 ~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~W--d~~~~~~~~le~id~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~ 121 (206)
T cd08867 46 HLYRAEGIVDALPEKVIDVIIPPCGGLRLKW--DKSLKHYEVLEKISEDLCVGRT--ITPSAAMGLISPRDFVDLVYVKR 121 (206)
T ss_pred EEEEEEEEEcCCHHHHHHHHHhcCccccccc--cccccceEEEEEeCCCeEEEEE--EccccccCccCCcceEEEEEEEE
Confidence 4578999999999999999988 6665544 56778888886543 3333322 22231 2111
Q ss_pred --eeeEEEEEEEeeecccccceEEeeecCcce--eeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeee
Q 040266 72 --SGVMLVHVLVDQDRRDHSMKFKQVKTGFMK--RFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLE 147 (238)
Q Consensus 72 --sgt~~v~L~V~Ed~~~~~l~F~l~kgdFmK--~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~ 147 (238)
.+++-+...-.+.+.- .- ..++.| .+.|.|.++|+..+ ..++.+|+-
T Consensus 122 ~~~~~~~i~~~Sv~hp~~-----p~-~~~~VR~~~~~~g~~i~p~~~~-----------------------~~~t~~~~~ 172 (206)
T cd08867 122 YEDNQWSSSGKSVDIPER-----PP-TPGFVRGYNHPCGYFCSPLKGS-----------------------PDKSFLVLY 172 (206)
T ss_pred eCCCeEEEEEEeccCCCC-----CC-CCCcEEEEeecCEEEEEECCCC-----------------------CCceEEEEE
Confidence 1112222121211110 00 112222 35789999997311 134788888
Q ss_pred eeeecccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 040266 148 QLIQPAIVPPPPISWYLRGITARTTEMLIHDLLAE 182 (238)
Q Consensus 148 Q~vqP~~~~Pppls~~vR~It~k~t~~lL~DL~~e 182 (238)
..+-|...-|. |+|-..+.+..-..+++|++.
T Consensus 173 ~~~DpkG~iP~---~lvn~~~~~~~~~~~~~lr~~ 204 (206)
T cd08867 173 VQTDLRGMIPQ---SLVESAMPSNLVNFYTDLVKG 204 (206)
T ss_pred EEeccCCCCcH---HHHHhhhhhhHHHHHHHHHHh
Confidence 88999987774 568888888888888888864
No 63
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=90.26 E-value=1.4 Score=35.13 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=23.1
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVF 37 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F 37 (238)
+.++-.+.+||+.||+.||||+.+...
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W 28 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARW 28 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhc
Confidence 567788999999999999999995533
No 64
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=88.88 E-value=16 Score=32.24 Aligned_cols=149 Identities=10% Similarity=0.013 Sum_probs=83.4
Q ss_pred CCceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEec-CCCeeEEEEEEeEE--EEEeeeeeeEEEEEEE
Q 040266 5 KGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLID-EGHRQVVEVEQAAL--WKFLWWSGVMLVHVLV 81 (238)
Q Consensus 5 kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~-dG~rq~V~VeQ~g~--w~FL~fsgt~~v~L~V 81 (238)
+.+..-..++..++.+|+.||+.|-|++....+ -+++.+-++|+. |++..++ ..++.. +.+..=+=-+.++..-
T Consensus 42 ~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~W--d~~~~~~~iie~Id~~T~I~-~~~~~~~~~~~vspRDfV~vr~~~ 118 (204)
T cd08904 42 KYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKW--DKSLQVYKMLQRIDSDTFIC-HTITQSFAMGSISPRDFVDLVHIK 118 (204)
T ss_pred CCCceEEEEEEEecCCHHHHHHHHhccchhhhh--cccccceeeEEEeCCCcEEE-EEecccccCCcccCceEEEEEEEE
Confidence 344466779999999999999999998776655 567778888863 3343322 233322 2221111111221111
Q ss_pred eeecccccceE-----Ee--eecCcceeee--eeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeec
Q 040266 82 DQDRRDHSMKF-----KQ--VKTGFMKRFE--GCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQP 152 (238)
Q Consensus 82 ~Ed~~~~~l~F-----~l--~kgdFmK~FE--GsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP 152 (238)
..+.....+.+ .. -..+|.|-+. |.|-++|+.-+. -.|++|+=-..-|
T Consensus 119 r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p-----------------------~~t~l~~~~~~Dl 175 (204)
T cd08904 119 RYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENP-----------------------AYSKLVMFVQPEL 175 (204)
T ss_pred EeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCC-----------------------CceEEEEEEEeCC
Confidence 11111111111 11 1234554444 589999984211 2255443333666
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 040266 153 AIVPPPPISWYLRGITARTTEMLIHDLLAE 182 (238)
Q Consensus 153 ~~~~Pppls~~vR~It~k~t~~lL~DL~~e 182 (238)
...-|. |+|-..+..+.-....||+..
T Consensus 176 kG~lP~---~vv~~~~~~~~~~f~~~~~~~ 202 (204)
T cd08904 176 RGNLSR---SVIEKTMPTNLVNLILDAKDG 202 (204)
T ss_pred CCCCCH---HHHHHHhHHHHHHHHHHHHHh
Confidence 666664 558888888888888898864
No 65
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=88.70 E-value=1.2 Score=36.62 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=26.8
Q ss_pred CceeEEEEEEEeCCChhHHhhhccCCCCcccc
Q 040266 6 GSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVF 37 (238)
Q Consensus 6 gglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F 37 (238)
..-..+.++-.|++||+.||+.||||+.++-+
T Consensus 5 ~~~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W 36 (149)
T COG3832 5 VEDRTLEIERLIDAPPEKVFEALTDPELLARW 36 (149)
T ss_pred CCCceEEEEEeecCCHHHHHHHhcCHHHHHhh
Confidence 34456889999999999999999999995544
No 66
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=88.10 E-value=5.3 Score=36.24 Aligned_cols=140 Identities=11% Similarity=0.149 Sum_probs=85.0
Q ss_pred EeCCChhHHhhhccCCCCcccccccccceeeeeEecC-CCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccccceEEe
Q 040266 16 NVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDE-GHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDHSMKFKQ 94 (238)
Q Consensus 16 ~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~d-G~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~~l~F~l 94 (238)
.+|.+|+.+|++..|=++-..| ||=|+.|.|.+++ +...+..++ -+|=.+.-++.-+ |.=.++. .++=.-
T Consensus 75 ligysp~~my~vVS~V~~Y~~F--VPwC~kS~V~~~~P~~~~kA~Le----VGFk~l~E~y~S~--Vt~~~p~-l~kt~~ 145 (227)
T KOG3177|consen 75 LIGYSPSEMYSVVSNVSEYHEF--VPWCKKSDVTSRRPSGPLKADLE----VGFKPLDERYTSN--VTCVKPH-LTKTVC 145 (227)
T ss_pred hhCCCHHHHHHHHHhHHHhhcc--ccceeccceeecCCCCCceeeEE----ecCcccchhheee--eEEeccc-ceEEee
Confidence 4789999999999999998889 9999999999876 443332222 2333333333333 2223453 233333
Q ss_pred eecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccCCCCchhHHHHHHHHHH-HH
Q 040266 95 VKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIVPPPPISWYLRGITART-TE 173 (238)
Q Consensus 95 ~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~~Pppls~~vR~It~k~-t~ 173 (238)
..|..-..-+--|+++|-. |- | | .+.|-|+-.|+ |.-+ |.+-+-.|+.+. ++
T Consensus 146 ~d~rLF~~L~t~Wsf~pg~-~~-------p-----------~----tc~ldf~v~Fe---F~S~-lhs~va~~Ffd~V~~ 198 (227)
T KOG3177|consen 146 ADGRLFNHLITIWSFKPGP-NI-------P-----------R----TCTLDFSVSFE---FKSL-LHSQVATIFFDEVVK 198 (227)
T ss_pred ccccHHHhhhheeeeccCC-CC-------C-----------C----eEEEEEEEEEE---ehhH-HHHHHHHHHHHHHHH
Confidence 4454435678899999964 10 1 1 23333333333 3332 545555555554 57
Q ss_pred HHHHHHHHHHHhhhCCCC
Q 040266 174 MLIHDLLAESARIRGSFD 191 (238)
Q Consensus 174 ~lL~DL~~ea~rir~~~~ 191 (238)
.|+++-.++|..+-+...
T Consensus 199 ~~v~AF~~ra~~~~gp~~ 216 (227)
T KOG3177|consen 199 QMVNAFEQRARKLYGPES 216 (227)
T ss_pred HHHHHHHHHHHHhhCccc
Confidence 788888888888777655
No 67
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=84.82 E-value=18 Score=38.05 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=81.7
Q ss_pred eEEEEEEEeCCChhHHhhhccCCCCcc-cccccccceeeeeE-ecCCCeeEEEEEEeEEEEEee---eeeeEEEEEEEee
Q 040266 9 CNLNVKVNVGLPPDAVYNIVTDPDNRR-VFKNIKEVLSRRVL-IDEGHRQVVEVEQAALWKFLW---WSGVMLVHVLVDQ 83 (238)
Q Consensus 9 c~l~~~~~i~lpPd~Vw~vLTDydn~~-~F~~I~~v~sskVl-~~dG~rq~V~VeQ~g~w~FL~---fsgt~~v~L~V~E 83 (238)
--|.++-.|+++|+.||+.|-+.+-.+ .+ -..+.+-+|| +=||+..++ =+...+.+|. +...| +-+..+.
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eW--D~~~~~~~vIE~ID~htdI~--Y~~~~~~~~~~~ispRDF-V~~Rywr 301 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEW--DCSFQYGSLVEEVDGHTAIL--YHRLQLDWFPMFVWPRDL-CYVRYWR 301 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccc--hhcccceEEEEEecCCeEEE--EEEeccccccCccCccee-EEEEEEE
Confidence 457888899999999999999888533 23 3344555666 357776554 2444444422 11111 1122223
Q ss_pred ecccc--cceEEee-------ecCcceeee--eeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeec
Q 040266 84 DRRDH--SMKFKQV-------KTGFMKRFE--GCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQP 152 (238)
Q Consensus 84 d~~~~--~l~F~l~-------kgdFmK~FE--GsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP 152 (238)
...++ .+.|.-+ ..+|.+.+. |-|.|.|+.-+ +| +..|.|++=-.+.+
T Consensus 302 r~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~-------------------~g--~~r~lv~~~lqtDl 360 (719)
T PLN00188 302 RNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPR-------------------NG--RPRTQVQHLMQIDL 360 (719)
T ss_pred EcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCC-------------------CC--CCceEEEEEEEEcc
Confidence 33333 2222221 245555543 89999998421 12 35688887777888
Q ss_pred ccCCCCchhHHHHHHHHH
Q 040266 153 AIVPPPPISWYLRGITAR 170 (238)
Q Consensus 153 ~~~~Pppls~~vR~It~k 170 (238)
..+-|.-++.+-|.|+++
T Consensus 361 kGW~~~y~~s~~~~~~l~ 378 (719)
T PLN00188 361 KGWGVGYIPSFQQHCLLQ 378 (719)
T ss_pred CccccccCccccccchHH
Confidence 888888788888888873
No 68
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=80.86 E-value=40 Score=29.91 Aligned_cols=142 Identities=24% Similarity=0.322 Sum_probs=80.0
Q ss_pred CCCceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEec-CCCeeEEEEEEe-------------EEEEEe
Q 040266 4 PKGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLID-EGHRQVVEVEQA-------------ALWKFL 69 (238)
Q Consensus 4 ~kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~-dG~rq~V~VeQ~-------------g~w~FL 69 (238)
+..+|.-..+.+.++.+|++|-..+.|+ ...+ ..++.+.++++. |++..++.-.-. -+|+--
T Consensus 47 d~~~lk~~r~~~ei~~~p~~VL~~vl~~--R~~W--D~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~ 122 (205)
T cd08909 47 DGNPLRLWKVSVEVEAPPSVVLNRVLRE--RHLW--DEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSRDFVVLRSWRTD 122 (205)
T ss_pred CCCceEEEEEEEEeCCCHHHHHHHHHhh--HhhH--HhhcceeEEEEEeCCCcEEEEEEeecCCCCCCCEEEEEEEEEEe
Confidence 4567888899999999999997766663 2322 556677777753 333222110000 011111
Q ss_pred eeeeeEEEEEEEeeecccccceEEeeecCc-ceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeee
Q 040266 70 WWSGVMLVHVLVDQDRRDHSMKFKQVKTGF-MKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQ 148 (238)
Q Consensus 70 ~fsgt~~v~L~V~Ed~~~~~l~F~l~kgdF-mK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q 148 (238)
.-.|++-+...=.++... .. +|.. .....|-|-|+|.. .| .|+||+-+
T Consensus 123 ~~~G~~vi~~~Sv~H~~~-----p~-~g~VRa~~~~~gylI~P~~---------------------~g----~trvt~i~ 171 (205)
T cd08909 123 LPKGACSLVSVSVEHEEA-----PL-LGGVRAVVLDSQYLIEPCG---------------------SG----KSRLTHIC 171 (205)
T ss_pred CCCCcEEEEEecCCCCcC-----CC-CCcEEEEEEcCcEEEEECC---------------------CC----CEEEEEEE
Confidence 113333222222222211 01 1211 12357888999972 22 48999999
Q ss_pred eeecccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 040266 149 LIQPAIVPPPPISWYLRGITARTTEMLIHDLLAESARIRGSFD 191 (238)
Q Consensus 149 ~vqP~~~~Pppls~~vR~It~k~t~~lL~DL~~ea~rir~~~~ 191 (238)
-+-|...-| .||+..+- .-+.+++.|||....
T Consensus 172 ~vDpkG~~P---~W~~n~~g--------~~~~~~~~~~r~sf~ 203 (205)
T cd08909 172 RVDLKGHSP---EWYNKGFG--------HLCAAEAARIRNSFQ 203 (205)
T ss_pred EecCCCCCh---HHHHHhHH--------HHHHHHHHHHHhhcc
Confidence 999999888 46665433 345678888887653
No 69
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=79.62 E-value=34 Score=28.37 Aligned_cols=139 Identities=17% Similarity=0.145 Sum_probs=71.3
Q ss_pred EEEEEeCCChhHHhhhccCCCC-cccccccc--cceeeee-EecCCCeeEEEEEEeEEE--------EEeeeeeeEEEEE
Q 040266 12 NVKVNVGLPPDAVYNIVTDPDN-RRVFKNIK--EVLSRRV-LIDEGHRQVVEVEQAALW--------KFLWWSGVMLVHV 79 (238)
Q Consensus 12 ~~~~~i~lpPd~Vw~vLTDydn-~~~F~~I~--~v~sskV-l~~dG~rq~V~VeQ~g~w--------~FL~fsgt~~v~L 79 (238)
..++.+++|++.||.+|+|++= ...+..+. +.....+ ..++| ..|.+.|.-.- +| .++.+.+.-
T Consensus 2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g--~~v~~~~~v~~~~lP~~~~k~--v~~~l~v~~ 77 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG--VRVTVRQTVPADKLPSAARKF--VGGDLRVTR 77 (159)
T ss_pred eEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe--EEEEEEEecChhhCCHHHHHh--cCCCeEEEE
Confidence 4678899999999999999974 22222221 1111111 12223 23444443222 22 122222221
Q ss_pred EE-eeeccccc--ceEEe-eecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeecccC
Q 040266 80 LV-DQDRRDHS--MKFKQ-VKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAIV 155 (238)
Q Consensus 80 ~V-~Ed~~~~~--l~F~l-~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~~ 155 (238)
.- +....++. ..|.. +.|.-+ .+.|.-.++|- + -||.++++-.++=.+
T Consensus 78 ~e~w~~~~~g~~~g~~~~~~~G~P~-~~~G~~~L~~~----------------------~----~gt~~~~~g~v~v~V- 129 (159)
T PF10698_consen 78 TETWTPLDDGRRTGTFTVSIPGAPV-SISGTMRLRPD----------------------G----GGTRLTVEGEVKVKV- 129 (159)
T ss_pred EEEEecCCCCeEEEEEEEEecCceE-EEEEEEEEecC----------------------C----CCEEEEEEEEEEEEE-
Confidence 10 00001111 11222 235555 48888888883 1 457777777776443
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040266 156 PPPPISWYLRGITARTTEMLIHDLLAESA 184 (238)
Q Consensus 156 ~Pppls~~vR~It~k~t~~lL~DL~~ea~ 184 (238)
|.|..-|=..-..++..+|+..++-+.
T Consensus 130 --PlvGgkiE~~v~~~~~~~~~~e~~~~~ 156 (159)
T PF10698_consen 130 --PLVGGKIEKAVAENLRKLLEAEQEFTA 156 (159)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667776777777777777766655444
No 70
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=47.78 E-value=57 Score=27.57 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=33.8
Q ss_pred EEEEEEEeCCChhHHhhhccCCCC--cccccccccceeeeeEecCCCeeEEEEEEeEEEEEeeeeeeEEEEEEE
Q 040266 10 NLNVKVNVGLPPDAVYNIVTDPDN--RRVFKNIKEVLSRRVLIDEGHRQVVEVEQAALWKFLWWSGVMLVHVLV 81 (238)
Q Consensus 10 ~l~~~~~i~lpPd~Vw~vLTDydn--~~~F~~I~~v~sskVl~~dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V 81 (238)
.+.+++.+.-++++|-.+|.||+. +..|..|++ +..+|+.=. |.=+|+.+...+..+..+
T Consensus 2 ~~~~~i~t~H~~e~v~~ILSDP~F~lp~l~p~ik~------v~~~~~sF~------~~g~~~~~~~~~~G~vy~ 63 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILSDPEFVLPRLFPPIKS------VKVEENSFR------AEGKFGGFPFEMKGNVYV 63 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT-HHHHHHHHSTTEEE------EE-STTEEE------EEEEETTEEEEEEEEEEE
T ss_pred eEEEEeccCCChHheEEEecCCccEecccCCceEE------EEecCCEEE------EEEEEeeEEEEEEEEEEE
Confidence 367888899999999999999997 444433332 335566211 222366566555555554
No 71
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=46.81 E-value=95 Score=24.87 Aligned_cols=102 Identities=13% Similarity=0.195 Sum_probs=56.0
Q ss_pred EEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEec--CCCeeEEEEEEeEEEEEeeeeeeEEEEEEEeeecccc
Q 040266 11 LNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLID--EGHRQVVEVEQAALWKFLWWSGVMLVHVLVDQDRRDH 88 (238)
Q Consensus 11 l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~--dG~rq~V~VeQ~g~w~FL~fsgt~~v~L~V~Ed~~~~ 88 (238)
|.+.-++.+|++.+|+.|.+---.. |+..+-.++..+ .|=.- .+ -+ +..-.+.+.+.+-.++.
T Consensus 1 MkI~~~l~v~a~~ff~~l~~s~~~D----I~~~tgk~~~~~~L~G~~Y----~K-----~~--~~~~~~~v~It~~~~~~ 65 (120)
T PF11687_consen 1 MKISKTLNVSAEEFFDYLIDSLLYD----IKQATGKKLPVKQLKGFSY----QK-----KF--KNKREAKVKITEYEPNK 65 (120)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHH----HHHHcCCCCChhhcCCcEE----EE-----Ec--CCCCEEEEEEEEEcCCC
Confidence 5678899999999999987632211 222222221000 23211 01 11 11114444566666654
Q ss_pred cceEEeeecCcceeeeeeEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeeccc
Q 040266 89 SMKFKQVKTGFMKRFEGCWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQPAI 154 (238)
Q Consensus 89 ~l~F~l~kgdFmK~FEGsW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP~~ 154 (238)
.-.+....... .+.=+|.++|+. .| .+.|||++.+.+.-
T Consensus 66 ~Y~~~~~s~~~--~~~i~Y~i~~~~---------------------~~----~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 66 RYAATFSSSRG--TFTISYEIEPLD---------------------DG----SIEVTYEEEYESKG 104 (120)
T ss_pred EEEEEEEecCC--CEEEEEEEEECC---------------------CC----cEEEEEEEEEccCC
Confidence 44444333333 377799999983 12 27889999999863
No 72
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.03 E-value=16 Score=34.58 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=29.7
Q ss_pred CCceeEEEEEEEeCCChhHHhhhccCCCCcccc
Q 040266 5 KGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVF 37 (238)
Q Consensus 5 kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F 37 (238)
+.+.+.|.+..++.++|+.+|++|||++-...|
T Consensus 169 ~~~t~di~l~~tfn~~~~eLy~~fld~~rv~~w 201 (301)
T KOG2936|consen 169 VIPTADISLSATFNCRVDELYEIFLDPERVKAW 201 (301)
T ss_pred ccccccceehhhcCCCHHHHHHHHhcHHHHHHh
Confidence 345688999999999999999999999998888
No 73
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=41.05 E-value=2.7e+02 Score=25.01 Aligned_cols=150 Identities=11% Similarity=0.036 Sum_probs=82.8
Q ss_pred CCCCceeEEEEEEEeCCChhHHhhhccCCCCcccccccccceeeeeEecCCC-eeEE-EEEEeEEEEEeeeeeeEEEEEE
Q 040266 3 VPKGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDEGH-RQVV-EVEQAALWKFLWWSGVMLVHVL 80 (238)
Q Consensus 3 ~~kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~dG~-rq~V-~VeQ~g~w~FL~fsgt~~v~L~ 80 (238)
.|+.+.+--.+|..++..|+.||+.+.+-.+...+ -+++++-++|++=+. ..+. .+.....+++..=+=-+.++.
T Consensus 41 ~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~W--d~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~- 117 (202)
T cd08902 41 SEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDW--DSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSY- 117 (202)
T ss_pred CCcCCCceEEEEEEecCCHHHHHHHHhcccchhcc--cchhhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEE-
Confidence 35666667778888899999999999885544444 456666677754222 2221 344444444433111122211
Q ss_pred Eeeecccccce------EEeeecCcceeeee--eEEEeeecccccccCCCCCCCccccccccCCCceeeeeeeeeeeeec
Q 040266 81 VDQDRRDHSMK------FKQVKTGFMKRFEG--CWVIEPLFVDEKLCFPFQPKTCEDYHSCTRGKGRIASTVSLEQLIQP 152 (238)
Q Consensus 81 V~Ed~~~~~l~------F~l~kgdFmK~FEG--sW~VePl~vD~~~c~~~~P~~~~~y~~c~~g~~rigS~vT~~Q~vqP 152 (238)
...+.++.+. +.....+|.|-|.| .|-++|+.-+ . ..|++|+=-..-|
T Consensus 118 -~~~~~d~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~---------------------p--~k~~~t~~lq~DL 173 (202)
T cd08902 118 -TTQYEDGLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDN---------------------P--SHSLLTGYIQTDL 173 (202)
T ss_pred -EEEeCCCeEEEEeeecCCCCCCCeEeecccccEEEEEECCCC---------------------C--CceEEEEEEEecC
Confidence 1222222111 11123367777765 9999998522 1 2243333222556
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 040266 153 AIVPPPPISWYLRGITARTTEMLIHDLLAE 182 (238)
Q Consensus 153 ~~~~Pppls~~vR~It~k~t~~lL~DL~~e 182 (238)
...-|.-+ |-..+.++.-.-..+|++.
T Consensus 174 kG~LPqsi---Idq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 174 RGMLPQSA---VDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred CCCccHHH---HHHHhhHHHHHHHHHHHHh
Confidence 66666544 7777888877888888764
No 74
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=29.17 E-value=4.5e+02 Score=24.00 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=36.6
Q ss_pred CCCCceeEEEEEEEeC-CChhHHhhhccCCCCcccccccccceeeeeEecC
Q 040266 3 VPKGSLCNLNVKVNVG-LPPDAVYNIVTDPDNRRVFKNIKEVLSRRVLIDE 52 (238)
Q Consensus 3 ~~kgglc~l~~~~~i~-lpPd~Vw~vLTDydn~~~F~~I~~v~sskVl~~d 52 (238)
.|++|++...+..+.. ++|+.|++++.|=+=.+-. -..+....+|+.+
T Consensus 47 ~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkW--D~~vi~~e~ie~d 95 (219)
T KOG2761|consen 47 RPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRKKW--DDMVIELETIEED 95 (219)
T ss_pred ccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHHHH--HHHhhhheeeeec
Confidence 5889999888877765 9999999999997755544 3455566677666
No 75
>PF01541 GIY-YIG: GIY-YIG catalytic domain; InterPro: IPR000305 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. It is found in the amino terminal region of excinuclease abc subunit c (uvrC), Bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and phage.; GO: 0004518 nuclease activity, 0006281 DNA repair, 0005622 intracellular; PDB: 1YWL_A 1YD6_D 1YD5_A 1YD1_A 1YCZ_A 1YD0_A 1YD3_A 1YD4_A 1YD2_A 1LN0_A ....
Probab=28.76 E-value=31 Score=24.18 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.6
Q ss_pred cccccchHHHHHHHHHhHHh
Q 040266 208 IDQISDIKERWAFRRRLAKQ 227 (238)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~ 227 (238)
++++.+++.||+.|......
T Consensus 17 IG~t~nl~~R~~~H~~~~~~ 36 (80)
T PF01541_consen 17 IGSTKNLKKRLNEHFSGNKS 36 (80)
T ss_dssp EEEESSHHHHHHHHHHHCTH
T ss_pred EEEECCHHHHHHHHhcCCCC
Confidence 78889999999999776533
No 76
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=25.10 E-value=2.3e+02 Score=22.58 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=24.7
Q ss_pred cccceeeeeEecCCCeeEEEEEEeEEEEE
Q 040266 40 IKEVLSRRVLIDEGHRQVVEVEQAALWKF 68 (238)
Q Consensus 40 I~~v~sskVl~~dG~rq~V~VeQ~g~w~F 68 (238)
-=+|+|+.+...||.+++|-|=..|.+.|
T Consensus 9 dGkV~S~~~~~~dG~~~TlGVm~pGeY~F 37 (94)
T PF06865_consen 9 DGKVKSITFEFADGSKKTLGVMLPGEYTF 37 (94)
T ss_dssp CCTEEEEEEEETTSEEEEEEEE-SECEEE
T ss_pred CCeEEEEEEEcCCCCcceEEEEeeeEEEE
Confidence 45789999999999999999999999876
No 77
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=25.06 E-value=37 Score=35.24 Aligned_cols=46 Identities=33% Similarity=0.561 Sum_probs=37.0
Q ss_pred EEEeEE-EEE-eeeeeeEEEEEEEeeecccccceEEeeecCcceeeeeeEEEeee
Q 040266 60 VEQAAL-WKF-LWWSGVMLVHVLVDQDRRDHSMKFKQVKTGFMKRFEGCWVIEPL 112 (238)
Q Consensus 60 VeQ~g~-w~F-L~fsgt~~v~L~V~Ed~~~~~l~F~l~kgdFmK~FEGsW~VePl 112 (238)
+|++|. |.| |.+||-|.-...|+.++.- .+..+++ .|.|+|.+++.
T Consensus 203 tE~~G~V~gf~l~~Sgnf~~f~ev~q~~~~------~Vq~g~l-~~~~e~~l~~~ 250 (687)
T COG3345 203 TEEAGEVYGFGLTYSGNFAAFVEVHQHPFF------RVQDGIL-PFDGEWFLEEF 250 (687)
T ss_pred hhhcceEEEEEEeeccchhheeeeccCchh------hhhhccc-ccCceEecccc
Confidence 567776 788 7799999999888776652 4668887 79999999986
No 78
>PF15365 PNRC: Proline-rich nuclear receptor coactivator
Probab=22.87 E-value=61 Score=23.47 Aligned_cols=16 Identities=31% Similarity=0.740 Sum_probs=11.1
Q ss_pred eeecccCCCCchhHHH
Q 040266 149 LIQPAIVPPPPISWYL 164 (238)
Q Consensus 149 ~vqP~~~~Pppls~~v 164 (238)
.=.|+.+|.|++.|.-
T Consensus 13 sP~PssLP~P~f~~~~ 28 (58)
T PF15365_consen 13 SPSPSSLPLPPFHWKS 28 (58)
T ss_pred CCChhhcCCCCccccc
Confidence 3446678888888773
No 79
>COG5580 Activator of HSP90 ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.00 E-value=98 Score=28.74 Aligned_cols=85 Identities=20% Similarity=0.326 Sum_probs=56.4
Q ss_pred CCCCceeEEEEEEEeCCChhHHhhhccCCCCcccc-------cccc----cceeeeeEecCCCeeEEEEEEeEEEEEeee
Q 040266 3 VPKGSLCNLNVKVNVGLPPDAVYNIVTDPDNRRVF-------KNIK----EVLSRRVLIDEGHRQVVEVEQAALWKFLWW 71 (238)
Q Consensus 3 ~~kgglc~l~~~~~i~lpPd~Vw~vLTDydn~~~F-------~~I~----~v~sskVl~~dG~rq~V~VeQ~g~w~FL~f 71 (238)
++.--..-|.-+.++.+|.+.+|+.+-|++-.+.+ ..-| -++-+++++.|+. +| -.|++--|
T Consensus 144 v~~~~tadi~~~~tfn~p~~ELy~tfLd~~ri~aWsrs~~~f~~~p~Lf~GnVi~~l~Ekdkk--iv-----~~WkL~~W 216 (272)
T COG5580 144 VEDARTADIIYKATFNCPVDELYNTFLDHERISAWSRSRAMFEGDPILFDGNVIRRLREKDKK--IV-----MEWKLREW 216 (272)
T ss_pred cccccccceeeecccCCcHHHHHHHhhCHHHhhhhcCChhhccCCCeEeccHHHHHHHHhCcc--EE-----EEEEcccC
Confidence 33333455677889999999999999999864433 2212 3344556666665 22 24999999
Q ss_pred eeeEEEEEEEeeecccccceEEe
Q 040266 72 SGVMLVHVLVDQDRRDHSMKFKQ 94 (238)
Q Consensus 72 sgt~~v~L~V~Ed~~~~~l~F~l 94 (238)
+-.+.+...+++....-.++.++
T Consensus 217 s~~~e~tf~~~q~~s~tkl~vk~ 239 (272)
T COG5580 217 SDFTEATFMLEQYLSSTKLTVKQ 239 (272)
T ss_pred ccccceEEEeccccccceEEEEE
Confidence 98888888777766654454433
No 80
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=20.61 E-value=93 Score=26.56 Aligned_cols=28 Identities=36% Similarity=0.607 Sum_probs=24.3
Q ss_pred cCcceeeeeeEEEeeecccccccCCCCCC
Q 040266 97 TGFMKRFEGCWVIEPLFVDEKLCFPFQPK 125 (238)
Q Consensus 97 gdFmK~FEGsW~VePl~vD~~~c~~~~P~ 125 (238)
.+-| +|.|-++|=|.++|-++-.|++|.
T Consensus 5 p~~~-~fdldytiwP~~vdthl~~pfkP~ 32 (144)
T KOG4549|consen 5 PEAM-QFDLDYTIWPRLVDTHLDYPFKPF 32 (144)
T ss_pred Ccee-EEeccceeeeEEEEeccccccccc
Confidence 3455 699999999999999999999995
Done!