BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040274
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 54 WILPSSGRYMAVAGRRTDLMRV--NPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGP 111
WI P A++G R+ + RV +P V+ T+ +W T + H
Sbjct: 94 WI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS 152
Query: 112 VSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
V ++F +G L+A+ + IK+WD + +E ++T+ GH
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKT---LDFSQKG-LLA 163
H+ PV+ + FHP +M + ++ IK+WD + +TL GH + + F G LLA
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 164 VGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYED 206
+ L DF G G+ + + VS P D
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHD----HNVSSVSIMPNGD 205
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 85 GHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL 144
G T+ MW +T L+ ++ H V + FH G + + + +++WD + +
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373
Query: 145 QTLTGH---AKTLDFSQKGLLAVGTGSFAQIL 173
+TL H +LDF + V TGS Q +
Sbjct: 374 KTLNAHEHFVTSLDFHKTAPYVV-TGSVDQTV 404
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 82 VSLGHSGG---------TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK 132
+S HSG T+ +W + M H VS+++ PNG + + ++
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215
Query: 133 IKIWDLRKYEVLQTLTGH 150
IK+W+++ ++T TGH
Sbjct: 216 IKMWEVQTGYCVKTFTGH 233
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W LL + H V+ +AF P+G +A+ + +K+W+ R ++LQTLTG
Sbjct: 244 TVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 301
Query: 150 HAKTL 154
H+ ++
Sbjct: 302 HSSSV 306
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W LL + H V +AF P+G +A+ + +K+W+ R ++LQTLTG
Sbjct: 203 TVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 260
Query: 150 HAKTLD 155
H+ +++
Sbjct: 261 HSSSVN 266
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W LL + H V +AF P+G +A+ + +K+W+ R ++LQTLTG
Sbjct: 80 TVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 137
Query: 150 HAKTL 154
H+ ++
Sbjct: 138 HSSSV 142
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W LL + H V +AF P+G +A+ + +K+W+ R ++LQTLTG
Sbjct: 367 TVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 424
Query: 150 HAKTL 154
H+ ++
Sbjct: 425 HSSSV 429
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W LL + H V +AF P+G +A+ + +K+W+ R ++LQTLTG
Sbjct: 449 TVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 506
Query: 150 HAKTL 154
H+ ++
Sbjct: 507 HSSSV 511
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W LL + H V +AF P+G +A+ + +K+W+ R ++LQTLTG
Sbjct: 490 TVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 547
Query: 150 HAKTL 154
H+ ++
Sbjct: 548 HSSSV 552
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W LL + H V +AF P+G +A+ + +K+W+ R ++LQTLTG
Sbjct: 39 TVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 96
Query: 150 HAKTL 154
H+ ++
Sbjct: 97 HSSSV 101
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W LL + H V +AF P+G +A+ + +K+W+ R ++LQTLTG
Sbjct: 121 TVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 178
Query: 150 HAKTL 154
H+ ++
Sbjct: 179 HSSSV 183
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W LL + H V +AF P+G +A+ + +K+W+ R ++LQTLTG
Sbjct: 162 TVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 219
Query: 150 HAKTL 154
H+ ++
Sbjct: 220 HSSSV 224
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W LL + H V +AF P+G +A+ + +K+W+ R + LQTLTG
Sbjct: 285 TVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTG 342
Query: 150 HAKTL 154
H+ ++
Sbjct: 343 HSSSV 347
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 104 KMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTL 154
++ H V +AF P+G +A+ + +K+W+ R ++LQTLTGH+ ++
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 60
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 102 LIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTL 154
L + H V +AF P+G +A+ + +K+W+ R ++LQTLTGH+ ++
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 388
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W LL + H V +AF P+ +A+ + +K+W+ R ++LQTLTG
Sbjct: 408 TVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTG 465
Query: 150 HAKTL 154
H+ ++
Sbjct: 466 HSSSV 470
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWD 137
TV +W LL + H V +AF P+G +A+ + +K+W+
Sbjct: 531 TVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T +W T H G V +L+ P+ L + + K+WD+R+ QT TG
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 150 HAKTLD----FSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF 201
H ++ F A G+ L D Y ++++ G I VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T +W T H G V +L+ P+ L + + K+WD+R+ QT TG
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 150 HAKTLD----FSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF 201
H ++ F A G+ L D Y ++++ G I VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T +W T H G V +L+ P+ L + + K+WD+R+ QT TG
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 150 HAKTLD----FSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF 201
H ++ F A G+ L D Y ++++ G I VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T +W T H G V +L+ P+ L + + K+WD+R+ QT TG
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 150 HAKTLD----FSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF 201
H ++ F A G+ L D Y ++++ G I VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T +W T H G V +L+ P+ L + + K+WD+R+ QT TG
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 150 HAKTLD----FSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSF 201
H ++ F A G+ L D Y ++++ G I VSF
Sbjct: 236 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 289
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT 148
G + ++ T LL + H P+ +L F P+ L+ T + IKI+D++ + TL+
Sbjct: 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 245
Query: 149 GHA 151
GHA
Sbjct: 246 GHA 248
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 112 VSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHA---KTLDFSQKGLLAV 164
+ ++A+ P+G +A+ + I I+D+ ++L TL GHA ++L FS L V
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 194 LCRIWDTASGQCLKTL 209
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 193 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Query: 147 LTGH 150
TGH
Sbjct: 252 YTGH 255
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 110 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 169
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 170 HSDPVSAVHFNRDGSLIVSS 189
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 146 -SGSFDE 151
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 86
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 196 LCRIWDTASGQCLKTL 211
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 195 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253
Query: 147 LTGH 150
TGH
Sbjct: 254 YTGH 257
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 112 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 171
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 172 HSDPVSAVHFNRDGSLIVSS 191
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 147
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 148 -SGSFDE 153
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 88
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 175 LCRIWDTASGQCLKTL 190
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 174 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Query: 147 LTGH 150
TGH
Sbjct: 233 YTGH 236
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 150
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSS 170
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 127 -SGSFDE 132
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 175 LCRIWDTASGQCLKTL 190
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 174 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Query: 147 LTGH 150
TGH
Sbjct: 233 YTGH 236
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 150
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSS 170
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 127 -SGSFDE 132
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 173 LCRIWDTASGQCLKTL 188
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 172 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230
Query: 147 LTGH 150
TGH
Sbjct: 231 YTGH 234
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 89 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 148
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 149 HSDPVSAVHFNRDGSLIVSS 168
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 124
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 125 -SGSFDE 130
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 15 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 65
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 175 LCRIWDTASGQCLKTL 190
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 174 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Query: 147 LTGH 150
TGH
Sbjct: 233 YTGH 236
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 150
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSS 170
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 127 -SGSFDE 132
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A + + IKIW + +T++GH
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 189 LCRIWDTASGQCLKTL 204
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 188 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246
Query: 147 LTGH 150
TGH
Sbjct: 247 YTGH 250
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 105 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 164
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 165 HSDPVSAVHFNRDGSLIVSS 184
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 140
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 141 -SGSFDE 146
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 31 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 81
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 178 LCRIWDTASGQCLKTL 193
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 177 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 147 LTGH 150
TGH
Sbjct: 236 YTGH 239
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 153
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 154 HSDPVSAVHFNRDGSLIVSS 173
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 130 -SGSFDE 135
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 70
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 175 LCRIWDTASGQCLKTL 190
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 174 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKT 232
Query: 147 LTGH 150
TGH
Sbjct: 233 YTGH 236
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL+ + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ L+TL
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSS 170
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 127 -SGSFDE 132
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 172 LCRIWDTASGQCLKTL 187
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 171 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Query: 147 LTGH 150
TGH
Sbjct: 230 YTGH 233
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 148 HSDPVSAVHFNRDGSLIVSS 167
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 124 -SGSFDE 129
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 64
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 172 LCRIWDTASGQCLKTL 187
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 171 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Query: 147 LTGH 150
TGH
Sbjct: 230 YTGH 233
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 148 HSDPVSAVHFNRDGSLIVSS 167
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 124 -SGSFDE 129
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 64
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 178 LCRIWDTASGQCLKTL 193
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 177 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 147 LTGH 150
TGH
Sbjct: 236 YTGH 239
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 153
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 154 HSDPVSAVHFNRDGSLIVSS 173
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 85 GHSGGTVTMWKPT----TSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK 140
G G + T KPT AL + H VS++ F PNG +A++ + IKIW
Sbjct: 1 GPLGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 141 YEVLQTLTGH 150
+ +T++GH
Sbjct: 61 GKFEKTISGH 70
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 130 -SGSFDE 135
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 178 LCRIWDTASGQCLKTL 193
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 177 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 147 LTGH 150
TGH
Sbjct: 236 YTGH 239
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 85 GHSGGTVTMWKPT----TSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK 140
G G + T KPT AL + H VS++ F PNG +A++ + IKIW
Sbjct: 1 GAMGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 141 YEVLQTLTGH 150
+ +T++GH
Sbjct: 61 GKFEKTISGH 70
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 153
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 154 HSDPVSAVHFNRDGSLIVSS 173
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 130 -SGSFDE 135
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 177 LCRIWDTASGQCLKTL 192
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 176 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234
Query: 147 LTGH 150
TGH
Sbjct: 235 YTGH 238
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 93 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 152
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 153 HSDPVSAVHFNRDGSLIVSS 172
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 89 GTVTMWKPT----TSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL 144
G+ T KPT AL + H VS++ F PNG +A++ + IKIW +
Sbjct: 4 GSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 63
Query: 145 QTLTGH 150
+T++GH
Sbjct: 64 KTISGH 69
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 128
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 129 -SGSFDE 134
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 175 LCRIWDTASGQCLKTL 190
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 174 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Query: 147 LTGH 150
TGH
Sbjct: 233 YTGH 236
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL+ + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ L+TL
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSS 170
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 127 -SGSFDE 132
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 168 LCRIWDTASGQCLKTL 183
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 167 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
Query: 147 LTGH 150
TGH
Sbjct: 226 YTGH 229
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 84 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 143
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 144 HSDPVSAVHFNRDGSLIVSS 163
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 119
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 120 -SGSFDE 125
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 10 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 60
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 72 LMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKEC 131
NP + ++ G +V +W T L + H PVSA+ F+ +G L+ ++ +
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 132 KIKIWDLRKYEVLQTL 147
+IWD + L+TL
Sbjct: 171 LCRIWDTASGQCLKTL 186
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQG--PVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
G +W T S +K L PVS + F PNG + + +K+WD K + L+T
Sbjct: 170 GLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228
Query: 147 LTGH 150
TGH
Sbjct: 229 YTGH 232
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
T+ +W ++ L + H V F+P +L+ + + ++IWD++ + L+TL
Sbjct: 87 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 146
Query: 150 HAK---TLDFSQKGLLAVGT 166
H+ + F++ G L V +
Sbjct: 147 HSDPVSAVHFNRDGSLIVSS 166
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGLLAV 164
H+ +S +A+ + +L+ + + +KIWD+ + L+TL GH+ +F+ + L V
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 165 GTGSFAQ 171
+GSF +
Sbjct: 123 -SGSFDE 128
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
AL + H VS++ F PNG +A++ + IKIW + +T++GH
Sbjct: 13 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 29 PLREELYGKSAKAAAKVEKNL--VHILWILPSSGRYMA--VAGRRTDLMRVNPFNG---- 80
P E+Y + AK AK E + +++ WI + + ++ V TD + F+
Sbjct: 571 PETSEVY-RQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQR 629
Query: 81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK 140
+ S G + T+ ++K T L+ + H+ V AF + +AT + K+KIWD
Sbjct: 630 IASCG-ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Query: 141 YEVLQTLTGHAKTLD---FSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGY 194
+++ T H++ ++ F+ K LLA G+ F L D + + G++
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT----N 744
Query: 195 QIGKVSFRPYEDVLG 209
+ F P +++L
Sbjct: 745 SVNHCRFSPDDELLA 759
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT 148
GTV +W T + HQG V + A + ++T + KIW L L
Sbjct: 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124
Query: 149 GH---AKTLDFSQKGLLAVGTGS 168
GH + FS G+L + TG
Sbjct: 1125 GHNGCVRCSAFSLDGIL-LATGD 1146
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 13/134 (9%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT- 148
T +W + L ++ H G V AF +G L+AT +I+IW++ ++L +
Sbjct: 1108 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAP 1167
Query: 149 -----------GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIG 197
G + FS V G + + +G + + Y + +K +
Sbjct: 1168 ISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVS 1227
Query: 198 KVSFRPYEDVLGIG 211
FR Y V +G
Sbjct: 1228 P-DFRTYVTVDNLG 1240
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 29 PLREELYGKSAKAAAKVEKNL--VHILWILPSSGRYMA--VAGRRTDLMRVNPFNG---- 80
P E+Y + AK AK E + +++ WI + + ++ V TD + F+
Sbjct: 578 PETSEVY-RQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQR 636
Query: 81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK 140
+ S G + T+ ++K T L+ + H+ V AF + +AT + K+KIWD
Sbjct: 637 IASCG-ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 695
Query: 141 YEVLQTLTGHAKTLD---FSQKG---LLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGY 194
+++ T H++ ++ F+ K LLA G+ F L D + + G++
Sbjct: 696 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT----N 751
Query: 195 QIGKVSFRPYEDVLG 209
+ F P +++L
Sbjct: 752 SVNHCRFSPDDELLA 766
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT 148
GTV +W T + HQG V + A + ++T + KIW L L
Sbjct: 1072 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1131
Query: 149 GH---AKTLDFSQKGLLAVGTGS 168
GH + FS G+L + TG
Sbjct: 1132 GHNGCVRCSAFSLDGIL-LATGD 1153
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 13/134 (9%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT- 148
T +W + L ++ H G V AF +G L+AT +I+IW++ ++L +
Sbjct: 1115 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAP 1174
Query: 149 -----------GHAKTLDFSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIG 197
G + FS V G + + +G + + Y + +K +
Sbjct: 1175 ISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVS 1234
Query: 198 KVSFRPYEDVLGIG 211
FR Y V +G
Sbjct: 1235 P-DFRTYVTVDNLG 1247
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 91 VTMWKPTTSALLIKMLYHQGPVSALAFHPNGH--LMATTGKECKIKIWDLRKYEVLQTLT 148
V +W T L+ H V+ F + H L+AT +C +K+WDL + E T+
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMF 746
Query: 149 GHAKTLD 155
GH +++
Sbjct: 747 GHTNSVN 753
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 84/194 (43%), Gaps = 18/194 (9%)
Query: 29 PLREELYGKS-AKAAAKVEKNLVHILWILPSSGRYMA--VAGRRTDLMRVNPFNG----V 81
P E+Y ++ +A +V+ ++++ WI + ++ V TD + F+ +
Sbjct: 577 PETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRI 636
Query: 82 VSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKY 141
S G + T+ ++K T L+++ H+ V AF + +AT + K+KIW+
Sbjct: 637 ASCG-ADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTG 695
Query: 142 EVLQTLTGHAKTLDF------SQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQ 195
E++ T H++ ++ S LLA G+ L D + + G++
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHT----NS 751
Query: 196 IGKVSFRPYEDVLG 209
+ F P + +L
Sbjct: 752 VNHCRFSPDDKLLA 765
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQ-----------TLTGHAKTLDF 156
H G V AF + L+AT +I+IW++ E+L T G L F
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCF 1191
Query: 157 SQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQIGKVSFRPYEDVLGIG 211
S G + + G + + +G + + Y + +K + F+ Y V +G
Sbjct: 1192 SPDGKMLISAGGYIKWWNVVTGESSQTFYTNGTNLKKIHVSP-DFKTYVTVDNLG 1245
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL-- 138
V+ G S TV +W T +L +++H V L F N +M T K+ I +WD+
Sbjct: 185 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMAS 242
Query: 139 -RKYEVLQTLTGH---AKTLDFSQKGLLA 163
+ + L GH +DF K +++
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDFDDKYIVS 271
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 73 MRVNPFNGVVSLGHSGGTVTMWK---PTTSALLIKMLYHQGPVSALAFHPNGHLMATTGK 129
+R N NG++ ++ +W PT L ++ H+ V+ + F + ++++ +G
Sbjct: 219 LRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGD 275
Query: 130 ECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGS 168
IK+W+ E ++TL GH + + Q V +GS
Sbjct: 276 R-TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 313
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
TV +W + L + H G VS +A P+G L A+ GK+ + +WDL + + L +L
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Query: 150 HA 151
++
Sbjct: 602 NS 603
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 73 MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK 132
+ V+P + + G G V +W L L + AL F PN + + E
Sbjct: 567 VAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS-LEANSVIHALCFSPNRYWLCA-ATEHG 624
Query: 133 IKIWDLRKYEVLQTL 147
IKIWDL +++ L
Sbjct: 625 IKIWDLESKSIVEDL 639
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK 140
V+ G V +W T L+ + H V+++ P+G L A++ K+ ++WDL K
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Query: 141 YEVLQTLTGHA 151
E L + A
Sbjct: 228 GEALSEMAAGA 238
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 93 MWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK 152
+W K L H V ++AF P+ + + G++ +++W++ K E + TL+ A
Sbjct: 93 LWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAH 151
Query: 153 T 153
T
Sbjct: 152 T 152
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 112 VSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAK---TLDFSQKGL-LAVGTG 167
+ ++ F P+G +AT ++ I+IWD+ +++ L GH + +LD+ G L G+G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 30/58 (51%)
Query: 91 VTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT 148
+ +W +++ + H+ + +L + P+G + + + ++IWDLR + TL+
Sbjct: 147 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 77 PFNGVVSLGHSGGTVTMWKPTTSA-------LLIKMLYHQGPVSALAFHPNGHLMATTGK 129
P +++ G TV++W SA LL + H+ V +A+ +G+ +AT +
Sbjct: 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127
Query: 130 ECKIKIWDL----RKYEVLQTLTGHAKTL 154
+ + IW+ +YE + L H++ +
Sbjct: 128 DKSVWIWETDESGEEYECISVLQEHSQDV 156
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAV 164
H V +L+F+ +G + + G + K++ WD++ E + TL H ++ ++ +LAV
Sbjct: 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI-EEDILAV 345
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAV 164
H V +L+F+ +G + + G + K++ WD++ E + TL H ++ ++ +LAV
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI-EEDILAV 355
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 76 NPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKI 135
NP +VS G V +W L + H G ++ + P+G L A+ GK+ + +
Sbjct: 185 NPI--IVSCGWDK-LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 241
Query: 136 WDLRKYEVLQTLTG 149
WDL + + L TL G
Sbjct: 242 WDLNEGKHLYTLDG 255
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 76 NPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKI 135
NP +VS G V +W L + H G ++ + P+G L A+ GK+ + +
Sbjct: 162 NPI--IVSCGWDK-LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218
Query: 136 WDLRKYEVLQTLTG 149
WDL + + L TL G
Sbjct: 219 WDLNEGKHLYTLDG 232
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 76 NPFNGVVSLGHSGGTVTMWKPTTS--ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKI 133
+P ++ T +WK + + H+ V ++A+ P+G+L+AT ++ +
Sbjct: 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 134 KIWDL---RKYEVLQTLTGHAKTL 154
+W++ +YE + L H + +
Sbjct: 130 WVWEVDEEDEYECVSVLNSHTQDV 153
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTG 167
H+ V +LAF P+G +A+ + ++IW R+Y L +++G+ G+
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIW--RQY------------LPGNEQGVACSGSD 238
Query: 168 SFAQILGDFSGSHNYSRY 185
+ + SG H+ + Y
Sbjct: 239 PSWKCICTLSGFHSRTIY 256
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL 147
T+ +W T + + + H VS FHP ++ + ++ +KIW+ Y+V +TL
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 119 PNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFS 157
P+ M T + IKIWD + + TL GH + F+
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL 147
T+ +W T + + + H VS FHP ++ + ++ +KIW+ Y+V +TL
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 119 PNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFS 157
P+ M T + IKIWD + + TL GH + F+
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGL-LAVGT 166
H G V+ L F +G + T G + ++++W+ E TL + K + S+KGL V
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE--NTLVNYGKVCNNSKKGLKFTVSC 301
Query: 167 GSFAQILGDFSGS--HNYSRYMGN--SMVKGY 194
G ++ + GS Y+ Y G +M+KG+
Sbjct: 302 GCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH 333
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPN-GHLMATTGKECKIKIWDLR 139
+V++G G V + + + + H+ + A+++ P +++AT + ++K+WD+R
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 140 KYE-VLQTLTGH----------AKT--------LDFSQKG--LLAVGTGSFAQILGDFSG 178
+ L TL H A T L F+ G LL VGT + ++ +G
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 179 SH---NYSRYMGNS 189
+ NY + NS
Sbjct: 278 ENTLVNYGKVCNNS 291
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 74 RVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKI 133
+V PF + G + +W T + H+ V+ L+ PNG +AT GK+ K+
Sbjct: 179 KVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL 237
Query: 134 KIWDL 138
IWD+
Sbjct: 238 LIWDI 242
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL 138
T+ +W T + + HQ V ++AF P+ + + G E +IK+W++
Sbjct: 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 53 LWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGG---TVTMWKPTTSALLIKMLYHQ 109
LW + + Y G ++D+M V+ + S+ SG T+ +W L +L H
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVD-IDKKASMIISGSRDKTIKVWT-IKGQCLATLLGHN 148
Query: 110 GPVSALAFHPN------GHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG 160
VS + PN + + G + +K W+L ++++ GH TL S G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 161 LLAVGTGSFAQIL 173
L G +I+
Sbjct: 209 TLIASAGKDGEIM 221
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFS 157
H ++ L P+G L+A+ GK+ +I +W+L + + TL+ + +
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 103 IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLD------F 156
+K + H G V L + P+G +A+ + IKIW++ +V +T+ + D +
Sbjct: 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292
Query: 157 SQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMV 191
+++ L+++ F + GS + RY N +
Sbjct: 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAI 327
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 53 LWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGG---TVTMWKPTTSALLIKMLYHQ 109
LW + + Y G ++D+M V+ + S+ SG T+ +W L +L H
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVD-IDKKASMIISGSRDKTIKVWT-IKGQCLATLLGHN 142
Query: 110 GPVSALAFHPN------GHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG 160
VS + PN + + G + +K W+L ++++ GH TL S G
Sbjct: 143 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 202
Query: 161 LLAVGTGSFAQIL 173
L G +I+
Sbjct: 203 TLIASAGKDGEIM 215
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFS 157
H ++ L P+G L+A+ GK+ +I +W+L + + TL+ + +
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 238
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 53 LWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGG---TVTMWKPTTSALLIKMLYHQ 109
LW + + Y G ++D+M V+ + S+ SG T+ +W L +L H
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVD-IDKKASMIISGSRDKTIKVWT-IKGQCLATLLGHN 148
Query: 110 GPVSALAFHPN------GHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG 160
VS + PN + + G + +K W+L ++++ GH TL S G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 161 LLAVGTGSFAQIL 173
L G +I+
Sbjct: 209 TLIASAGKDGEIM 221
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFS 157
H ++ L P+G L+A+ GK+ +I +W+L + + TL+ + +
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 53 LWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGG---TVTMWKPTTSALLIKMLYHQ 109
LW + + Y G ++D+M V+ + S+ SG T+ +W L +L H
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVD-IDKKASMIISGSRDKTIKVWT-IKGQCLATLLGHN 148
Query: 110 GPVSALAFHPN------GHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG 160
VS + PN + + G + +K W+L ++++ GH TL S G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 161 LLAVGTGSFAQIL 173
L G +I+
Sbjct: 209 TLIASAGKDGEIM 221
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFS 157
H ++ L P+G L+A+ GK+ +I +W+L + + TL+ + +
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 53 LWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGG---TVTMWKPTTSALLIKMLYHQ 109
LW + + Y G ++D+M V+ + S+ SG T+ +W L +L H
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVD-IDKKASMIISGSRDKTIKVWT-IKGQCLATLLGHN 148
Query: 110 GPVSALAFHPN------GHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG 160
VS + PN + + G + +K W+L ++++ GH TL S G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 161 LLAVGTGSFAQIL 173
L G +I+
Sbjct: 209 TLIASAGKDGEIM 221
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFS 157
H ++ L P+G L+A+ GK+ +I +W+L + + TL+ + +
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 78 FNGV-VSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIW 136
F+G+ V G ++ +W T + + HQ S + N ++ + + +KIW
Sbjct: 287 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIW 344
Query: 137 DLRKYEVLQTLTG 149
D++ + LQTL G
Sbjct: 345 DIKTGQCLQTLQG 357
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 79 NGVVSLGHSGGTVTMWKPTTSALLIKML---YHQGPVSALAFHPNGHLMATTGKECKIKI 135
+ ++ G++ TV +W T L + HQ V+ L F+ N + T+ + +K+
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKL 386
Query: 136 WDLRKYEVLQTL 147
WDL+ E ++ L
Sbjct: 387 WDLKTGEFIRNL 398
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 79 NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL 138
N +VS G T+ +W T L ++ H G V + N + +T + +K+W+
Sbjct: 130 NRIVS-GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR--TLKVWNA 186
Query: 139 RKYEVLQTLTGHAKTL 154
E + TL GH T+
Sbjct: 187 ETGECIHTLYGHTSTV 202
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 79 NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL 138
+ ++ G + T+ +W T + + H V + H + + ++ +++WD+
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDI 226
Query: 139 RKYEVLQTLTGHAKTLDFSQKGLLAVGTGSF 169
+ L L GH + Q V +G++
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY 257
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 49 LVHILWILPSSGRYMAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYH 108
+H L+ S+ R M + +R VVS G T+ +W T L ++ H
Sbjct: 191 CIHTLYGHTSTVRCMHLHEKR-----------VVS-GSRDATLRVWDIETGQCLHVLMGH 238
Query: 109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGS 168
V + + +G + + + +K+WD L TL GH + Q + V +GS
Sbjct: 239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGS 296
Query: 169 F 169
Sbjct: 297 L 297
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL 147
T+ +W T + + + H VS FHP ++ + ++ +KIW+ Y+V +TL
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 119 PNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFS 157
P+ M T + IKIWD + + TL GH + F+
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 90 TVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTL 147
T+ +W T + + + H VS FHP ++ + ++ +KIW+ Y+V +TL
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 119 PNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFS 157
P+ M T + IKIWD + + TL GH + F+
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTG 167
QG + AL++ + AT G + I++WD+ + +Q T + L Q G++A G G
Sbjct: 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 310
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 109 QGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTG 167
QG + AL++ + AT G + I++WD+ + +Q T + L Q G++A G G
Sbjct: 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 310
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTL 154
H ++ L F P+G + ++ ++ ++KIW ++ +TL GH T+
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 181
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 12/130 (9%)
Query: 89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPN--GHLMATTGKECKIKIWDLRKYEVLQT 146
GT +W + LL H V L P+ G+ + G + K +WD+R + +Q
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA 235
Query: 147 LTGHAKTLD----FSQKGLLAVGTGSFAQILGDFSGSHNYSRYMGNSMVKGYQ------I 196
H ++ + A G+ L D + Y S++ G
Sbjct: 236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS 295
Query: 197 GKVSFRPYED 206
G++ F Y D
Sbjct: 296 GRLLFAGYND 305
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTL 154
H ++ L F P+G + ++ ++ ++KIW ++ +TL GH T+
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 184
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 77 PFNGVVSLGHSGGTVTMWKPTTSALLIKM-LYHQGPVS-ALAFHPNGHLMATTGKECKIK 134
P + +G T+++W IK L P ALA P+ + + + I
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 135 IWDLRKYEVLQTLTGH---AKTLDFSQKG 160
+WDL +++ GH A +D S G
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDG 195
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 73 MRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECK 132
+ ++P + V S G + +W L+ + H S + +G + T G +
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 133 IKIWDLRKYEVLQ--TLTGHAKTLDFSQKG-LLAVG 165
++ WDLR+ LQ T +L + G LAVG
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG 242
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 63/143 (44%), Gaps = 23/143 (16%)
Query: 25 KGQLPLREEL-----YGKSAKAAAKVEKNLV-------HILWILPSSGRYMAV------A 66
G +P+ L Y S + E L+ +LW + ++G+ +++ +
Sbjct: 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV-TTGQRISIFGSEFPS 202
Query: 67 GRRTDLMR--VNPFNGVVSL-GHSGGTVTMWKPTTSALLIKMLY-HQGPVSALAFHPNGH 122
G D++ +N N + + G TV +W ++ ++ + H+G ++++ F P+G
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 123 LMATTGKECKIKIWDLRKYEVLQ 145
T + +++D+R LQ
Sbjct: 263 RFGTGSDDGTCRLFDMRTGHQLQ 285
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 79 NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDL 138
N +VS G + +W TS + H V AF PNG +A G + I++L
Sbjct: 79 NWIVSASQDGRLI-VWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137
Query: 139 R-------KYEVLQTLTGH---AKTLDF--SQKGLLAVGTGSFAQILGDFS 177
V + LTGH A + + Q+ L G+G +L D +
Sbjct: 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT 188
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 81 VVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRK 140
++S G+ V W + + H ++ L P+G L+A+ GK+ +I +W+L
Sbjct: 169 IISAGNDK-XVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Query: 141 YEVLQTLTGHAKTLDFS 157
+ TL+ + +
Sbjct: 228 KKAXYTLSAQDEVFSLA 244
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 14/132 (10%)
Query: 53 LWILPSSGRYMAVAGRRTDLMRVN---PFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQ 109
LW + + Y G ++D+ V+ + ++S G T+ +W L +L H
Sbjct: 91 LWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS-GSRDKTIKVWT-IKGQCLATLLGHN 148
Query: 110 GPVSALAFHPN------GHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFSQKG 160
VS + PN + + G + +K W+L ++++ GH TL S G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 161 LLAVGTGSFAQI 172
L G +I
Sbjct: 209 TLIASAGKDGEI 220
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 89 GTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLT 148
G + +++ T K++ H GP+S L F+ L+ + + ++IW
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 149 GHAKTL 154
GH++++
Sbjct: 287 GHSQSI 292
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 79/226 (34%), Gaps = 40/226 (17%)
Query: 78 FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNG--HLMATTGKECKIKI 135
F+G +S S V + T LI+ + G + H H K K+ I
Sbjct: 169 FHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSI 228
Query: 136 WDLRKYEVLQTLTGHAKTLDFSQKGLLAV--------GTGSFAQILG--DFSGSHNYSRY 185
+ +K++ L L H + GLL V GT G GSH +
Sbjct: 229 PEGKKFDTLWQLVEH---YSYKADGLLRVLTVPCQKIGTQGNVNFGGRPQLPGSHPATWS 285
Query: 186 MGN--SMVKGYQIGK-----------------VSFRPYEDVLGIGHSMGWSGILVPRSSE 226
G S +K Y K VSF PYE L W+ P+
Sbjct: 286 AGGIISRIKSYSFPKPGHRKSSPAQGNRQESTVSFNPYEPELA-----PWAADKGPQREA 340
Query: 227 PNFDSWV-ANPFETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVR 271
D+ V +PF ++ R KEV+ L LE L GTV+
Sbjct: 341 LPMDTEVFESPFADPEEIRPKEVYLDRKLLTLEDKELGSGNFGTVK 386
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 103 IKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGHAKTL 154
IK+ H+ P++ + ++ G L+ + K+ +W E L TL GH T+
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI 77
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 108 HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH---AKTLDFS--QKGLL 162
H V LA+ +G +A+ G + ++IWD R T T H K + + Q LL
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL 275
Query: 163 AVGTGSFAQILGDFSGSHNYSRYMG---NSMVKGYQIGKVSFRPYE 205
A G G+ + + H ++ G N++ G Q+ + + P+
Sbjct: 276 ATGGGTMDKQI------HFWNAATGARVNTVDAGSQVTSLIWSPHS 315
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 89 GTVTMWKPTT-SALLIKMLY---HQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVL 144
G V +W+ +LL+ H V L+ +G + GK+ +K+WDL + VL
Sbjct: 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL 174
Query: 145 QTLTGHAKTLD 155
++ H+ ++
Sbjct: 175 KSYNAHSSEVN 185
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
A + L H+ PV+A F P+G + TT ++ +I+++ +++ L H
Sbjct: 288 ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH 338
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
A + L H+ PV+A F P+G + TT ++ +I+++ +++ L H
Sbjct: 287 ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 100 ALLIKMLYHQGPVSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQTLTGH 150
A + L H+ PV+A F P+G + TT ++ +I+++ +++ L H
Sbjct: 287 ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 79/226 (34%), Gaps = 40/226 (17%)
Query: 78 FNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNG--HLMATTGKECKIKI 135
F+G +S S V + T LI+ + G + H H K K+ I
Sbjct: 170 FHGKISREESEQIVLIGSKTNGKFLIRARDNNGSYALCLLHEGKVLHYRIDKDKTGKLSI 229
Query: 136 WDLRKYEVLQTLTGHAKTLDFSQKGLLAV--------GTGSFAQILG--DFSGSHNYSRY 185
+ +K++ L L H + GLL V GT G GSH +
Sbjct: 230 PEGKKFDTLWQLVEH---YSYKADGLLRVLTVPCQKIGTQGNVNFGGRPQLPGSHPATWS 286
Query: 186 MGN--SMVKGYQIGK-----------------VSFRPYEDVLGIGHSMGWSGILVPRSSE 226
G S +K Y K VSF PYE L W+ P+
Sbjct: 287 AGGIISRIKSYSFPKPGHRKSSPAQGNRQESTVSFNPYEPELA-----PWAADKGPQREA 341
Query: 227 PNFDSWV-ANPFETSKQRREKEVHSLLDKLLLETIMLNPSKIGTVR 271
D+ V +P+ ++ R KEV+ L LE L GTV+
Sbjct: 342 LPMDTEVYESPYADPEEIRPKEVYLDRKLLTLEDKELGSGNFGTVK 387
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 90 TVTMWKPTTSALLIKMLYHQGP---VSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
+V +W +S ++++L + P +S++A+ G+ +A ++++WD+++ + L+
Sbjct: 137 SVYLWS-ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 195
Query: 147 LTGHA 151
+T H+
Sbjct: 196 MTSHS 200
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 90 TVTMWKPTTSALLIKMLYHQGP---VSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
+V +W +S ++++L + P +S++A+ G+ +A ++++WD+++ + L+
Sbjct: 126 SVYLWS-ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184
Query: 147 LTGHA 151
+T H+
Sbjct: 185 MTSHS 189
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 32/85 (37%)
Query: 67 GRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMAT 126
G + V+ +V G T+ +W L + H + + + +
Sbjct: 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 327
Query: 127 TGKECKIKIWDLRKYEVLQTLTGHA 151
+ I+IWDL E++ TL GH
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHT 352
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 67 GRRTDLMRVNPF-NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMA 125
G T ++ F + V G + ++ L+++ H G V AL + +G ++
Sbjct: 119 GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILV 177
Query: 126 TTGKECKIKIWDLRKYEVLQTLTGHAKT---LDFSQ-KGLLAVGTGS 168
+ + +++WD++K GH T LD + K + + TGS
Sbjct: 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 67 GRRTDLMRVNPF-NGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMA 125
G T ++ F + V G + ++ L+++ H G V AL + +G ++
Sbjct: 119 GHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILV 177
Query: 126 TTGKECKIKIWDLRKYEVLQTLTGHAKT---LDFSQ-KGLLAVGTGS 168
+ + +++WD++K GH T LD + K + + TGS
Sbjct: 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 31/85 (36%)
Query: 67 GRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSALLIKMLYHQGPVSALAFHPNGHLMAT 126
G + V+ +V G T+ +W L + H + + + +
Sbjct: 268 GHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCIS 327
Query: 127 TGKECKIKIWDLRKYEVLQTLTGHA 151
+ I+IWDL E+ TL GH
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQGHT 352
>pdb|3TCV|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase
From Brucella Melitensis
pdb|3TCV|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase
From Brucella Melitensis
Length = 246
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 65 VAGRRTDLMRVNPFNGVVSLG--HSGGTVTMWKPTTSALLIKMLY 107
VAGR+ LMR++P NGV+ +G + G ++ T A + M Y
Sbjct: 111 VAGRQA-LMRIDPANGVIEIGSIYWGPLISRRPAATEAQFLFMQY 154
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 111 PVSALAFHPNG-HLMATTGKECKIKIWDLRK 140
P+ + HPN H++AT G++ + IWD+R+
Sbjct: 238 PLHCVDRHPNQQHVVATGGQDGMLSIWDVRQ 268
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 108 HQGPVSALAFHP-NGHLMATTGKECKIKIWDLRK-------YEVLQTLTGHAK 152
H PV +A+ P N +++A+ ++C + +W++ E + TL GH K
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
>pdb|3E7J|A Chain A, Heparinaseii H202a/y257a Double Mutant Complexed With A
Heparan Sulfate Tetrasaccharide Substrate
pdb|3E7J|B Chain B, Heparinaseii H202a/y257a Double Mutant Complexed With A
Heparan Sulfate Tetrasaccharide Substrate
Length = 749
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 111 PVSALAFHPNGHLMATTG--KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGS 168
P+S + P G ++A TG E I + +Y L A KG LA+ GS
Sbjct: 346 PLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGS 405
Query: 169 FAQILGDFSGSHN 181
+ G ++ HN
Sbjct: 406 YTGSSGGYNSPHN 418
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 108 HQGPVSALAFHP-NGHLMATTGKECKIKIWDLRK-------YEVLQTLTGHAKTLDF--- 156
H PV +A+ P N +++A+ ++C + +W++ E + TL GH K +
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 157 ---SQKGLLAVGT 166
+Q LL+ G
Sbjct: 140 HPTAQNVLLSAGC 152
>pdb|2FUQ|A Chain A, Crystal Structure Of Heparinase Ii
pdb|2FUQ|B Chain B, Crystal Structure Of Heparinase Ii
Length = 747
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 111 PVSALAFHPNGHLMATTG--KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGS 168
P+S + P G ++A TG E I + +Y L A KG LA+ GS
Sbjct: 344 PLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGS 403
Query: 169 FAQILGDFSGSHN 181
+ G ++ HN
Sbjct: 404 YTGSSGGYNSPHN 416
>pdb|3E80|A Chain A, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
pdb|3E80|B Chain B, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
pdb|3E80|C Chain C, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
Length = 749
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 111 PVSALAFHPNGHLMATTG--KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGS 168
P+S + P G ++A TG E I + +Y L A KG LA+ GS
Sbjct: 346 PLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGS 405
Query: 169 FAQILGDFSGSHN 181
+ G ++ HN
Sbjct: 406 YTGSSGGYNSPHN 418
>pdb|2NQ9|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
Endonuclease Iv (Endo Iv) Y72a Mutant Bound To Damaged
Dna
Length = 285
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 84 LGHSGGTVTMWKPTTSAL------LIKML--YHQGPVSALAFHPNGHLMATTGKECKIKI 135
L H + + P T AL I + Q +S L FHP HLM + ++C +I
Sbjct: 67 LPHDSALINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARI 126
Query: 136 WD-----LRKYE----VLQTLTGHAKTLDFSQKGLLAVGTG 167
+ L K + V++ G L F + L A+ G
Sbjct: 127 AESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAAIIDG 167
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 90 TVTMWKPTTSALLIKMLYHQGP---VSALAFHPNGHLMATTGKECKIKIWDLRKYEVLQT 146
+V +W ++ +L ++L + P +S++A+ G+ +A ++++WD+++ + L+
Sbjct: 46 SVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104
Query: 147 LTGHA 151
+T H+
Sbjct: 105 MTSHS 109
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 84 LGHSGGTVTMWKPTTSALLIKMLY----HQGPVSALAFHPNGHLMATTGKECKIKIWDLR 139
+ G V +W+ + LI + H VS ++ +G + K+ IK+WDL
Sbjct: 98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157
Query: 140 KYEVLQTLTGHA 151
+ VL + HA
Sbjct: 158 QQVVLSSYRAHA 169
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 102 LIKMLYHQGPVSALAFHPNGH-LMATTGKECKIKIWDLRK 140
+ K H+ V+ F+P LMAT+ + +K+WDLR
Sbjct: 196 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 235
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 43 AKVEKNLVHILWILPSSGRY--MAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA 100
A ++N W S+ + +AVAG R G + + P T
Sbjct: 102 ADADENFYTCAWTYDSNTSHPLLAVAGSR-------------------GIIRIINPITMQ 142
Query: 101 LLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
+ + H ++ L FHP + +L+ + K+ +++W+++ ++ G
Sbjct: 143 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 108 HQGPVSALAFHPNGH-LMATTGKECKIKIWDLRK 140
H+ V+ F+P LMAT+ + +K+WDLR
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 43 AKVEKNLVHILWILPSSGRY--MAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA 100
A ++N W S+ + +AVAG R G + + P T
Sbjct: 65 ADADENFYTCAWTYDSNTSHPLLAVAGSR-------------------GIIRIINPITMQ 105
Query: 101 LLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
+ + H ++ L FHP + +L+ + K+ +++W+++ ++ G
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 43 AKVEKNLVHILWILPSSGRY--MAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA 100
A ++N W S+ + +AVAG R G + + P T
Sbjct: 65 ADADENFYTCAWTYDSNTSHPLLAVAGSR-------------------GIIRIINPITMQ 105
Query: 101 LLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
+ + H ++ L FHP + +L+ + K+ +++W+++ ++ G
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 43 AKVEKNLVHILWILPSSGRY--MAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA 100
A ++N W S+ + +AVAG R G + + P T
Sbjct: 66 ADADENFYTCAWTYDSNTSHPLLAVAGSR-------------------GIIRIINPITMQ 106
Query: 101 LLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
+ + H ++ L FHP + +L+ + K+ +++W+++ ++ G
Sbjct: 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 43 AKVEKNLVHILWILPSSGRY--MAVAGRRTDLMRVNPFNGVVSLGHSGGTVTMWKPTTSA 100
A ++N W S+ + +AVAG R G + + P T
Sbjct: 61 ADADENFYTCAWTYDSNTSHPLLAVAGSR-------------------GIIRIINPITMQ 101
Query: 101 LLIKMLYHQGPVSALAFHP-NGHLMATTGKECKIKIWDLRKYEVLQTLTG 149
+ + H ++ L FHP + +L+ + K+ +++W+++ ++ G
Sbjct: 102 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1 EISYELDTKVKKYLRGEDFKRQKLKGQLPL 30
E+SY++ T V GED Q +KG L L
Sbjct: 217 EVSYQVQTHVASDAAGEDTAHQHIKGHLSL 246
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1 EISYELDTKVKKYLRGEDFKRQKLKGQLPL 30
E+SY++ T V GED Q +KG L L
Sbjct: 217 EVSYQVQTHVASDAAGEDTAHQHIKGHLSL 246
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1 EISYELDTKVKKYLRGEDFKRQKLKGQLPL 30
E+SY++ T V GED Q +KG L L
Sbjct: 217 EVSYQVQTHVASDAAGEDTAHQHIKGHLSL 246
>pdb|2FUT|A Chain A, Crystal Structure Of Heparinase Ii Complexed With A
Disaccharide Product
pdb|2FUT|B Chain B, Crystal Structure Of Heparinase Ii Complexed With A
Disaccharide Product
Length = 748
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 111 PVSALAFHPNGHLMATTG--KECKIKIWDLRKYEVLQTLTGHAKTLDFSQKGLLAVGTGS 168
P+S + P G +A TG E I + +Y L A KG LA+ GS
Sbjct: 345 PLSRYSGSPFGWXIARTGWGPESVIAEXKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGS 404
Query: 169 FAQILGDFSGSHN 181
+ G ++ HN
Sbjct: 405 YTGSSGGYNSPHN 417
>pdb|1NU9|C Chain C, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|F Chain F, Staphylocoagulase-prethrombin-2 Complex
Length = 281
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 236 PFETSKQRREKE----VHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAA 291
P S +R EKE + S+++ +ET + P I + +K K +G EA ++
Sbjct: 202 PHRISNERIEKEMIKDLESIIEDFFIETGLNKPDNITSYDSSKHHYKNHSEGFEALVKET 261
Query: 292 VEAIKGF--VWKNKT 304
EA+ WK KT
Sbjct: 262 REAVTNANDSWKTKT 276
>pdb|1NU7|D Chain D, Staphylocoagulase-Thrombin Complex
pdb|1NU7|H Chain H, Staphylocoagulase-Thrombin Complex
Length = 282
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 236 PFETSKQRREKE----VHSLLDKLLLETIMLNPSKIGTVREAKKKEKPTKQGREAEMEAA 291
P S +R EKE + S+++ +ET + P I + +K K +G EA ++
Sbjct: 203 PHRISNERIEKEMIKDLESIIEDFFIETGLNKPDNITSYDSSKHHYKNHSEGFEALVKET 262
Query: 292 VEAIKGF--VWKNKT 304
EA+ WK KT
Sbjct: 263 REAVTNANDSWKTKT 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,308,921
Number of Sequences: 62578
Number of extensions: 418940
Number of successful extensions: 1443
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 329
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)