BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040279
(626 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 139 LFKNMIAFGVRPDVITYGTLINGFCRTGNLSVALRLHKKM 178
+ K M AFG++P + +YG + GFCR G+ A + M
Sbjct: 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 38/209 (18%)
Query: 348 NVEEAMSLYRQIISNGVRQTVITYNTLLSGLFQAGQAGYAQKLFDEMKLYNVEPDLST-- 405
+V EA+ LY + NGV+ + YN LL Y L + + P LS
Sbjct: 41 DVLEALRLYDEARRNGVQLSQYHYNVLL----------YVCSLAEAATESSPNPGLSRGF 90
Query: 406 ---YNILIDGLCKNNCVQEAVKLFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFH 462
+++D + N F G + D + A+++
Sbjct: 91 DIFKQMIVDKVVPNEAT--------------FTNGARLAVAKDDP-------EMAFDMVK 129
Query: 463 KLPQKGLVPTVVTYSIMIHGLCRKGKLEKANDFLLYMEKNGCAPNVVTFNTLMHGFLQNN 522
++ G+ P + +Y + G CRKG +KA + +M ++ P L+ +
Sbjct: 130 QMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTK 189
Query: 523 KTSKVVELLHKMAEPERNLVPDDTTFSIV 551
KV + L ++ + R + +TF ++
Sbjct: 190 NADKVYKTLQRLRDLVRQV--SKSTFDMI 216
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK-LFHMLEMNKFEFGIEIFNCLIDGLCK 450
+E ++N ST NI+ QE ++ ++H + L + +
Sbjct: 60 EEAYMHNGRTGASTINIVFQRELGKEATQEEIESIYHEK------------SILFNSYPE 107
Query: 451 AGRLDNAWELFHKLPQKGLVPTVVTYS 477
A R+ AWEL K+ +GL P VVT S
Sbjct: 108 AERMPGAWELLQKVKSEGLTPMVVTGS 134
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 14/89 (15%)
Query: 138 WLFKNMIAFGVRPDVITYGT-LINGFCRTGNLSVALRLHKKMVSGDYENGLISKTNIFSY 196
W F + FGV PD+IT+ + +G+ G L+++ + + +SG+ G TN ++Y
Sbjct: 273 W-FASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLAR-ISGENAKGSWF-TNGYTY 329
Query: 197 S----------IIIDSLCKEGLVDKAKEL 215
S I+ + +EG+VD+A+E+
Sbjct: 330 SNQPVACAAALANIELMEREGIVDQAREM 358
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK-LFHMLEMNKFEFGIEIFNCLIDGLCK 450
+E +++ ST NI+ QE ++ ++H + L + +
Sbjct: 60 EEAYMHDGRTGASTINIVFQRELGKEATQEEIESIYHEK------------SILFNSYPE 107
Query: 451 AGRLDNAWELFHKLPQKGLVPTVVTYS 477
A R+ AWEL K+ +GL P VVT S
Sbjct: 108 AERMPGAWELLQKVKSEGLTPMVVTGS 134
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 141 KNMIAFGVRPDVITYGTLINGFCRTGNLSVA 171
K AFG++P + +YG + GFCR G+ A
Sbjct: 129 KQXKAFGIQPRLRSYGPALFGFCRKGDADKA 159
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK-LFHMLEMNKFEFGIEIFNCLIDGLCK 450
+E ++ ST NI+ QE ++ ++H + L + +
Sbjct: 60 EEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEK------------SILFNSYPE 107
Query: 451 AGRLDNAWELFHKLPQKGLVPTVVTYS 477
A R+ AWEL K+ +GL P VVT S
Sbjct: 108 AERMPGAWELLQKVKSEGLTPMVVTGS 134
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK-LFHMLEMNKFEFGIEIFNCLIDGLCK 450
+E ++ ST NI+ QE ++ ++H + L + +
Sbjct: 60 EEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEK------------SILFNSYPE 107
Query: 451 AGRLDNAWELFHKLPQKGLVPTVVTYS 477
A R+ AWEL K+ +GL P VVT S
Sbjct: 108 AERMPGAWELLQKVKSEGLTPMVVTGS 134
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK-LFHMLEMNKFEFGIEIFNCLIDGLCK 450
+E ++ ST NI+ QE ++ ++H + L + +
Sbjct: 60 EEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEK------------SILFNSYPE 107
Query: 451 AGRLDNAWELFHKLPQKGLVPTVVTYS 477
A R+ AWEL K+ +GL P VVT S
Sbjct: 108 AERMPGAWELLQKVKSEGLTPMVVTGS 134
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 392 DEMKLYNVEPDLSTYNILIDGLCKNNCVQEAVK-LFHMLEMNKFEFGIEIFNCLIDGLCK 450
+E ++ ST NI+ QE ++ ++H + L + +
Sbjct: 60 EEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEK------------SILFNSYPE 107
Query: 451 AGRLDNAWELFHKLPQKGLVPTVVTYS 477
A R+ AWEL K+ +GL P VVT S
Sbjct: 108 AERMPGAWELLQKVKSEGLTPMVVTGS 134
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 404 STYNILIDGLCKNNCVQEAVK-LFHMLEMNKFEFGIEIFNCLIDGLCKAGRLDNAWELFH 462
ST NI+ QE ++ ++H + L + +A R+ AWEL
Sbjct: 72 STINIVFQRELGKEATQEEIESIYHEK------------SILFNSYPEAERMPGAWELLQ 119
Query: 463 KLPQKGLVPTVVTYS 477
K+ +GL P VVT S
Sbjct: 120 KVKSEGLTPMVVTGS 134
>pdb|1NNV|A Chain A, The Solution Structure Of Hi1450
Length = 110
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 200 IDSLCKEGLVDKAKELFLEMKGRGINPAVVVCTTL-------IHGFCCAGNWEEVNGLFI 252
I L + +D A ++FLEM G ++PA ++ L + A +WEE G+ I
Sbjct: 8 IKKLDPDTAIDIAYDIFLEMAGENLDPADILLFNLQFEERGGVEFVETADDWEEEIGVLI 67
Query: 253 E 253
+
Sbjct: 68 D 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,216,680
Number of Sequences: 62578
Number of extensions: 760365
Number of successful extensions: 1508
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1482
Number of HSP's gapped (non-prelim): 25
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)